Citrus Sinensis ID: 008305

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570
Protein Sequence
MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYPPWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSITWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWTPQLVLRDSS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccEEEEEEEEEccccccEEEEEEEEEEccccEEEEEEEcccccEEcEEEEEEEEEEEEEEEEEcccccccEEEEEEEEEccccccEEEEEEEcccccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccccccccEEEEEEEEcccccccccccccccEEEEEEccccccEEccEEEccccccEEEEEEEEEEEEccccEEEEEEEccccccccccEEEEEEEEccccccccEEEEEEEEEcccccccccccccEEEEEEEEEEcccccccccccccccccHHHHHccccHHHHHHHHHHHHHccccccccEEEEEEEEEEEEEccccccccccccccEEEEEEEcccEEEEEcccccccccEEccEEEEEEEcccccEEEEEEEEccccccccEEEEEEEccccccccEEEEEEEccccccEEEEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccHHHccccEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcEEEEEEEEccccccEEEEEEEEEccccccEEEEEEEEEEcccccEEEEEEEEEEccEEEEEEEEEEEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEEccccHcccccHHHHHHHHHHHHHHHHcccccEEEEEEccccccHcccccccEEEEEEEEHccccccccccccccEEEEEEccccccEEEEEEEEccccccccEEEEEEEEcccccEEEEEEEcccccccccccccEEEEEHHHccHcccccEEEEcccccccccccccccEEEEEEEEEcccccccccccccccccHHHHHHHccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEEEcccEEEEEEEEEccccccccEEEEEEEEcccccEEEEEEEEcccccccccEEEEEEHHHHHHcccccEEEEcccccccEEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRmtvqdsrklippefyppwvvfQQRQKLNWLNYQLDKLWPFINEAASELIRsnvepileqyrpsilaslsfskltlgtvapqftgvaivesesgeegiTMELEmqwdgnpnivldirtrvgvglpvqvknigftGVFRLIFkplvdefpcfgavayslrekkdLDFTLKVvggdissipgisdAIEETIIDAIEdsitwpvrqiipilpgdysdlelkpcgtldVKLVQAkeltnkdligksdpfVVIFVRplrdrmktsktinnelnpiwnehfeftvedastqhltvrvfddegpmlapEIIGIAQIALkelepgkvkDVWLKLVKDVKvqrdtknrgqVHLELlycpfgtesslknpfnsdysLTTLEKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAaenlpkvdligkadPFVVLQLKKAgnraktrvahdtlnpvwnQTFDFVVEDGQHEMLILDvydhdtfgkdkmgkCIMTLTRVMMEgeiqdsfhidgtksgklflnlkwtpqlvlrdss
Flexible Loop (DISEMBL)
MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYPPWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVggdissipgisDAIEETIIDAIEDSITWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKEltnkdligksdpfvVIFVRplrdrmktsktinnelnpiWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDvkvqrdtknrgqvhLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSETSRAEAAelgkiatqkksdviVRGVLSITVIaaenlpkvdligkADPFVVLQLKKagnraktrvahdtlnpvwNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGklflnlkwtpqlvlrdss
Low Complexity Region (SEG)
MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYPPWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGisdaieetiidaiedsitWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGkvkdvwlklvkdvkvQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWTPQLVLRDSS
Disordered region (IsUnstruct)
**FLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYPPWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSITWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTE***************************************KSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWTPQLVL****
Disordered Region (DISOPRED)
MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTV*****LIPPEFYPPWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSITWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELT*****GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVK***DTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSETS**************KSDVIVRGVLSITVIAA*************PFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWTP*LVL****
Disordered Region (DISEMBL)
MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYPPWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSITWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEK**********AAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWTPQLVLRDSS
Disordered Region (DISPRO)
*SFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYPPWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSITWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGT*******************************************VIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWTPQLV*****
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYPPWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSITWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWTPQLVLRDSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	570	2.2.26 [Sep-21-2011]
A0JJX5	569	Synaptotagmin-4 OS=Arabid	yes	no	0.998	1.0	0.726	0.0
Q8L706	560	Synaptotagmin-5 OS=Arabid	no	no	0.982	1.0	0.680	0.0
Q7XA06	540	Synaptotagmin-3 OS=Arabid	no	no	0.815	0.861	0.306	3e-61
Q9SKR2	541	Synaptotagmin-1 OS=Arabid	no	no	0.887	0.935	0.309	2e-59
B6ETT4	537	Synaptotagmin-2 OS=Arabid	no	no	0.894	0.949	0.293	5e-55
Q5DTI8	891	Extended synaptotagmin-3	yes	no	0.843	0.539	0.253	3e-35
A0FGR9	886	Extended synaptotagmin-3	yes	no	0.787	0.506	0.271	1e-34
Q7ZWU7	876	Extended synaptotagmin-2-	N/A	no	0.771	0.502	0.25	3e-34
A0FGR8	921	Extended synaptotagmin-2	no	no	0.717	0.444	0.257	8e-34
Q5FWL4	872	Extended synaptotagmin-2-	N/A	no	0.861	0.563	0.242	1e-33

>sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/570 (72%), Positives = 495/570 (86%), Gaps = 1/570 (0%)

Query: 1   MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYP 60
           M FL+G+F GI+   GL+VA+ARY +VRS RRA+LA  +AAF+RMTVQDSRKL+P +FYP
Sbjct: 1   MGFLFGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYP 60

Query: 61  PWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLG 120
            WVVF QRQKLNWLN +L+K+WP++NEAASELI+S+VEP+LEQY P++LASL FSK TLG
Sbjct: 61  SWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLG 120

Query: 121 TVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
           TVAPQFTGV+I+ESESG  GITMELEMQWDGNP IVLD++T +GV LP++VKNIGFTGVF
Sbjct: 121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVF 180

Query: 181 RLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSI 240
           RLIFKPLVDEFPCFGA++YSLREKK LDFTLKV+GG+++SIPGISDAIEETI DAIEDSI
Sbjct: 181 RLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSI 240

Query: 241 TWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRM 300
           TWPVR+IIPILPGDYSDLELKP G LDVK+VQAK+L NKD+IGKSDP+ ++F+RPL DR 
Sbjct: 241 TWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRT 300

Query: 301 KTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
           K +KTI+N LNPIWNEHFEF VED STQHLTVRVFDDEG + + ++IG AQ+ L EL PG
Sbjct: 301 KKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEG-VGSSQLIGAAQVPLNELVPG 359

Query: 361 KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSE 420
           KVKD+WLKLVKD+++QRDTKNRGQV LELLYCP G E  LKNPFN DYSLT LEK LK E
Sbjct: 360 KVKDIWLKLVKDLEIQRDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYSLTILEKVLKPE 419

Query: 421 TSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA 480
           +  ++A ++ K+ T KK DVIVRGVLS+TV+AAE+LP VD +GKAD FVV+ LKK+  ++
Sbjct: 420 SEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFVVITLKKSETKS 479

Query: 481 KTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEI 540
           KTRV  D+LNPVWNQTFDFVVED  H++L L+V+DHD FGKDK+G+ IMTLTRVM+EGE 
Sbjct: 480 KTRVVPDSLNPVWNQTFDFVVEDALHDLLTLEVWDHDKFGKDKIGRVIMTLTRVMLEGEF 539

Query: 541 QDSFHIDGTKSGKLFLNLKWTPQLVLRDSS 570
           Q+ F +DG KSGKL ++LKWTP+L LRD+S
Sbjct: 540 QEWFELDGAKSGKLCVHLKWTPRLKLRDAS 569

May be involved in membrane trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1

 Score =  825 bits (2131), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/569 (68%), Positives = 491/569 (86%), Gaps = 9/569 (1%)

Query: 1   MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYP 60
           M F+ G+  G+  GI +++ + + EN RS+ R+ELAN VAAF+RMTV+DSRKL+PPEFYP
Sbjct: 1   MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60

Query: 61  PWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLG 120
            WVVF +RQKL WLN+ L K+WP+++EAASELI+++VEP+LEQYRP+I+ASL+FSKLTLG
Sbjct: 61  SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLG 120

Query: 121 TVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
           TVAPQFTGV++++ +  + GIT+EL+MQWDGNPNIVL ++T VGV LP+QVKNIGFTGVF
Sbjct: 121 TVAPQFTGVSVIDGD--KNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVF 178

Query: 181 RLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSI 240
           RLIF+PLV++FPCFGAV+ SLREKK LDFTLKVVGGDIS+IPG+S+AIEETI DA+EDSI
Sbjct: 179 RLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSI 238

Query: 241 TWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRM 300
           TWPVR++IPI+PGDYSDLELKP G L+VKLVQAK LTNKDL+GKSDPF  +F+RPLR++ 
Sbjct: 239 TWPVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKT 298

Query: 301 KTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
           K SKTINN+LNPIWNEHFEF VEDASTQHL VR++DDEG + A E+IG AQI L ELEPG
Sbjct: 299 KRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEG-VQASELIGCAQIRLCELEPG 357

Query: 361 KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSE 420
           KVKDVWLKLVKD+++QRDTKNRG+VHLELLY P+G+ + + NPF +  S+T+LE+ LK++
Sbjct: 358 KVKDVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGNGIVNPFVTS-SMTSLERVLKND 416

Query: 421 TSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA 480
           T+  E A     +++K+ DVIVRGVLS+TVI+AE +P  DL+GKADP+VVL +KK+G ++
Sbjct: 417 TTDEENA-----SSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKS 471

Query: 481 KTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEI 540
           KTRV +D+LNPVWNQTFDFVVEDG H+ML+L+V+DHDTFGKD +G+CI+TLTRV+ME E 
Sbjct: 472 KTRVVNDSLNPVWNQTFDFVVEDGLHDMLVLEVWDHDTFGKDYIGRCILTLTRVIMEEEY 531

Query: 541 QDSFHIDGTKSGKLFLNLKWTPQLVLRDS 569
           +D + +D +K+GKL L+LKW  Q + RDS
Sbjct: 532 KDWYPLDESKTGKLQLHLKWMAQSIYRDS 560

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1

 Score =  236 bits (603), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 157/512 (30%), Positives = 276/512 (53%), Gaps = 47/512 (9%)

Query: 62  WVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSI-LASLSFSKLTLG 120
           W+     ++++W N  +  +WP++++A   +IRS+V+P+   Y  +  + S+ F  L+LG
Sbjct: 62  WMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSLG 121

Query: 121 TVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
           T+ P   GV   E+   E+ +  E  ++W GNPNIVL ++  + + + VQ+ ++ F  + 
Sbjct: 122 TLPPTVHGVKFYET--NEKELLFEPSIKWAGNPNIVLVLKV-LSLRIRVQLVDLQFFAIV 178

Query: 181 RLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSI 240
           R+  KPL+  FPCFG V  SL EK  +DF LKV+GGD+ SIPG+   ++ETI   +    
Sbjct: 179 RVALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMY 238

Query: 241 TWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRM 300
            WP    IPIL    + ++ KP G L V +++A+ L  KDL+G SDP+V + +   +   
Sbjct: 239 HWPQVLEIPILDSSTASVK-KPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPA 297

Query: 301 KTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
           K +      LNP WNEHF+  V+D ++Q L + VFD +  +   + +G+  I L+++ PG
Sbjct: 298 KKTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDK-VGGHDRLGMQMIPLQKINPG 356

Query: 361 KVKDVWLKLVKDVKVQRDT---KNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSL 417
           + K+  L L+K+  V  D+   K RG++ ++L Y PF  ES  +                
Sbjct: 357 ERKEFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESIKR---------------- 400

Query: 418 KSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGK---ADPFVVLQLK 474
           + E+   +++E     +Q        G+LS+ V +A+     D+ GK   ++P+ V+  +
Sbjct: 401 RKESREEKSSEDDDFLSQA-------GLLSVAVQSAK-----DVEGKKKHSNPYAVVLFR 448

Query: 475 KAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ-HEMLILDVYDHDT----FGKDKMGKCIM 529
             G + KT++   T +P WN+ F F +E+    E + ++V    T      K+++G   +
Sbjct: 449 --GEKKKTKMLKKTRDPRWNEEFQFTLEEPPVKESIRVEVMSKGTGFHFRSKEELGHVDI 506

Query: 530 TLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWT 561
            L  V+  G I   +H+  +++G + + ++WT
Sbjct: 507 NLDDVVDNGRINQKYHLINSRNGIIHIEIRWT 538

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 177/571 (30%), Positives = 288/571 (50%), Gaps = 65/571 (11%)

Query: 9   FGISFGIGLMVAYARYENVRSRRRAELANIV--AAFSRMTVQDSRKLIP--PEFYPPWVV 64
           FG+   +GL++ Y  +  +       L N V       +  QD + ++   PE  P WV 
Sbjct: 13  FGVGISLGLVIGYVLFVYL-------LPNDVKDPEIRSIADQDPKAMLRMLPEI-PLWVK 64

Query: 65  FQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSI-LASLSFSKLTLGTVA 123
                +++W+N  L+ +WP++++A  +  ++  +PI+E+  P   + S+ F  LTLG++ 
Sbjct: 65  NPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFETLTLGSLP 124

Query: 124 PQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLI 183
           P F G+ +  ++  E  + ME  ++W  NPNI++ I+   G+   VQV ++      R+ 
Sbjct: 125 PTFQGMKVYLTDEKE--LIMEPCLKWAANPNILVAIKA-FGLKATVQVVDLQVFAQPRIT 181

Query: 184 FKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSITWP 243
            KPLV  FPCF  +  SL EK  +DF LK+ G D+ SIPG+   ++E I D + +   WP
Sbjct: 182 LKPLVPSFPCFANIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANMYLWP 241

Query: 244 VRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTS 303
              ++PIL  D +    +P G + VK+V+A  L  KDL+G +DPFV I +    D++ + 
Sbjct: 242 KTLVVPIL--DPAKAFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLS--EDKIPSK 297

Query: 304 KTI--NNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGK 361
           KT   +  LNP WNE F+F+V D  TQ L   V+D E  +  PE +G+  +ALKE+ P +
Sbjct: 298 KTTVKHKNLNPEWNEEFKFSVRDPQTQVLEFSVYDWEQ-VGNPEKMGMNVLALKEMVPDE 356

Query: 362 VKDVWLKLVKDVKVQRD----TKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSL 417
            K   L+L K +    D     K RG++ +ELLY PF TE  +   F             
Sbjct: 357 HKAFTLELRKTLDGGEDGQPPDKYRGKLEVELLYKPF-TEEEMPKGF------------- 402

Query: 418 KSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGK--ADPFVVLQLKK 475
             ET   + A  G  A          G+L + V +AE     D+ GK   +P+V +  K 
Sbjct: 403 -EETQAVQKAPEGTPAAG--------GMLVVIVHSAE-----DVEGKHHTNPYVRIYFK- 447

Query: 476 AGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ-HEMLILDVYDHDT-----FGKDKMGKCIM 529
            G   KT+      +P WN+ F F++E+    E L ++V    +       K+ +G   +
Sbjct: 448 -GEERKTKHVKKNRDPRWNEEFTFMLEEPPVREKLHVEVLSTSSRIGLLHPKETLGYVDI 506

Query: 530 TLTRVMMEGEIQDSFHIDGTKSGKLFLNLKW 560
            +  V+    +   FH+  +K+GK+ + L+W
Sbjct: 507 PVVDVVNNKRMNQKFHLIDSKNGKIQIELEW 537

Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata.

Arabidopsis thaliana (taxid: 3702)

>sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1

 Score =  216 bits (549), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 165/563 (29%), Positives = 286/563 (50%), Gaps = 53/563 (9%)

Query: 9   FGISFGIGLMVAYARYENVRSR--RRAELANIVAAFSRMTVQDSRKLIPPEFYPPWVVFQ 66
           FG    IG+++ Y  +   +S      E+  +V   S          + PE  P WV   
Sbjct: 13  FGFGTTIGIVIGYYLFIYFQSTDVEDPEIKPLVELDSETIAT-----MFPEI-PMWVKNP 66

Query: 67  QRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSI-LASLSFSKLTLGTVAPQ 125
              +++WLN  +  +WP++++A  ++ +S  +PI+ +  P+  + S+ F  LTLG++ P 
Sbjct: 67  DFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTLGSLPPS 126

Query: 126 FTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLIFK 185
           F G+ +  ++  E  I MEL ++W GNPNI++ +    G+   VQV ++      R+  K
Sbjct: 127 FQGMKVYATDDKE--IIMELSVKWAGNPNIIV-VAKAFGLKATVQVIDLQVYATPRITLK 183

Query: 186 PLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSITWPVR 245
           PLV  FPCF  +  SL +K  +DF LK++G D+ +IPG+   ++E I D + +   WP  
Sbjct: 184 PLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYLWPKT 243

Query: 246 QIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT 305
             + I+  D S    KP G L VK+++A +L  KDL+G SDP+V + +    D++   KT
Sbjct: 244 LNVQIM--DPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLS--GDKVPGKKT 299

Query: 306 I--NNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVK 363
           +  ++ LNP WNE F+  V++  +Q L + V+D E  +   + IG+  I LK+L P + K
Sbjct: 300 VVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQ-VGKHDKIGMNVIQLKDLTPEEPK 358

Query: 364 DVWLKLVKDVKVQR--DTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSET 421
            + L+L+K ++ +     K+RGQ+ +E+ Y PF  +     P N D            + 
Sbjct: 359 LMTLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDI---PENID------------DP 403

Query: 422 SRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAK 481
           +  E A  G  +T         G+L + V  AE     DL GK      ++L   G   K
Sbjct: 404 NAVEKAPEGTPSTG--------GLLVVIVHEAE-----DLEGKYHTNPSVRLLFRGEERK 450

Query: 482 TRVAHDTLNPVWNQTFDFVVEDGQ-HEMLILDVYDHDT---FGKDKMGKCIMTLTRVMME 537
           T+       P W++ F F +++   ++ L ++V    +     K+ +G  ++ L  V+  
Sbjct: 451 TKRVKKNREPRWDEDFQFPLDEPPINDKLHVEVISSSSRLIHPKETLGYVVINLGDVVSN 510

Query: 538 GEIQDSFHIDGTKSGKLFLNLKW 560
             I D +H+  +K+G++ + L+W
Sbjct: 511 RRINDKYHLIDSKNGRIQIELQW 533

May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2

 Score =  150 bits (379), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 136/536 (25%), Positives = 237/536 (44%), Gaps = 55/536 (10%)

Query: 28  RSRRRAELANIVAAFSRMTVQDSRKLIPPEF----YPPWVVFQQRQKLNWLNYQLDKLWP 83
           R  RR +L  + AAF  +  +  R+ I  E      P W+ F   +++ W N  + ++WP
Sbjct: 77  RRNRRGKLGRLEAAFEFL--EHEREFISRELRGQHLPAWIHFPDVERVEWANKIIIQIWP 134

Query: 84  FINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITM 143
           +++      IR  +EP + + +   L + +F+KL  G   P+  GV +   +     +T+
Sbjct: 135 YLSMIMENKIREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPKVNGVKVHTDKRNRRKVTL 193

Query: 144 ELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLRE 203
           +L++ + G+  I ++++   G      V  +   G  R+I +PL+ + P  GAV     +
Sbjct: 194 DLQICYIGDCEISVELQKIRG-----GVSGVQLQGTLRVILEPLLVDKPFIGAVTVFFLQ 248

Query: 204 KKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSITWPVRQIIPILPG-DYSDLELK- 261
           K  L      +  ++  +PGI++  +  + D I   +  P R  +P+  G D ++L +  
Sbjct: 249 KPHLQINWTGLT-NLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKGLDVTNLRVPL 307

Query: 262 PCGTLDVKLVQAKELTNKD----LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEH 317
           PCG + V L++AK+L  KD    L GKSDP+  + +     R   S+TI   LNP WNE 
Sbjct: 308 PCGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIGLQHCR---SRTIYKNLNPTWNEV 364

Query: 318 FEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQR 377
           FEF V +   Q L V ++D++      + +G  QI L ++   +V D W  L        
Sbjct: 365 FEFMVYEVPGQDLEVDLYDEDTD--KDDFLGSLQICLGDVMKNRVVDEWFAL-------N 415

Query: 378 DTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSETS--RAEAAELGKIATQ 435
           DT + G++HL L +    T+       +S  S   L   L++  +  R     L      
Sbjct: 416 DTTS-GRLHLRLEWLSLLTDQEALTENDSGLSTAILVVFLENACNLPRNPFDYLNGEYRA 474

Query: 436 KKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQ 495
           KK    V+   S                  DP   ++L        ++    + +PVW+Q
Sbjct: 475 KKLSRFVKNKAS-----------------RDPSSYVKLTVGKKTFTSKTCPHSKDPVWSQ 517

Query: 496 TFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGE--IQDSFHIDGT 549
            F F V     E L L V D +   +  +G     L R++   +  ++  F +D +
Sbjct: 518 VFSFFVHSVAAEQLCLKVLDDEL--ECALGVLEFPLCRILPCADLTLEQCFQLDHS 571

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|A0FGR9|ESYT3_HUMAN Extended synaptotagmin-3 OS=Homo sapiens GN=ESYT3 PE=2 SV=1

 Score =  148 bits (374), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 137/504 (27%), Positives = 226/504 (44%), Gaps = 55/504 (10%)

Query: 28  RSRRRAELANIVAAFSRMTVQDSRKLIPPEF----YPPWVVFQQRQKLNWLNYQLDKLWP 83
           R  RR +L  + AAF  +   + R+ I  E      P W+ F   +++ W N  + + WP
Sbjct: 73  RRNRRGKLGRLAAAFEFL--DNEREFISRELRGQHLPAWIHFPDVERVEWANKIISQTWP 130

Query: 84  FINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITM 143
           +++       R  +EP + + +   L + +F+KL  G   P+  GV    +      +T+
Sbjct: 131 YLSMIMESKFREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPRVNGVKAHTNTCNRRRVTV 189

Query: 144 ELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLRE 203
           +L++ + G+  I ++++ ++  G    V  I   G  R+I +PL+ + P  GAV     +
Sbjct: 190 DLQICYIGDCEISVELQ-KIQAG----VNGIQLQGTLRVILEPLLVDKPFVGAVTVFFLQ 244

Query: 204 KKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSITWPVRQIIPILPG-DYSDLELK- 261
           K  L      +  ++   PGI+D  +  + D I   +  P R  +P+  G D ++L    
Sbjct: 245 KPHLQINWTGLT-NLLDAPGINDVSDSLLEDLIATHLVLPNRVTVPVKKGLDLTNLRFPL 303

Query: 262 PCGTLDVKLVQAKELTNKD----LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEH 317
           PCG + V L++A++L  KD    L GKSDP+  + +     R   S+TI   LNP WNE 
Sbjct: 304 PCGVIRVHLLEAEQLAQKDNFLGLRGKSDPYAKVSIGLQHFR---SRTIYRNLNPTWNEV 360

Query: 318 FEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQR 377
           FEF V +   Q L V ++D++      + +G  QI L ++   +V D W        V  
Sbjct: 361 FEFMVYEVPGQDLEVDLYDEDTDR--DDFLGSLQICLGDVMTNRVVDEWF-------VLN 411

Query: 378 DTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSETS--RAEAAELGKIATQ 435
           DT + G++HL L +    T+  +    +   S   L   L+S  +  R     L      
Sbjct: 412 DTTS-GRLHLRLEWLSLLTDQEVLTEDHGGLSTAILVVFLESACNLPRNPFDYLNGEYRA 470

Query: 436 KKSDVIVRGVLSITVIAAENLPKVDLIGKADP--FVVLQLKKAGNRAKTRVAHDTLNPVW 493
           KK     R  +S                  DP  +V L + K  + +KT   H+  +PVW
Sbjct: 471 KKLSRFARNKVS-----------------KDPSSYVKLSVGKKTHTSKT-CPHNK-DPVW 511

Query: 494 NQTFDFVVEDGQHEMLILDVYDHD 517
           +Q F F V +   E L L V D D
Sbjct: 512 SQVFSFFVHNVATERLHLKVLDDD 535

May play a role as calcium-regulated intrinsic membrane protein.

Homo sapiens (taxid: 9606)

>sp|Q7ZWU7|EST2B_XENLA Extended synaptotagmin-2-B OS=Xenopus laevis GN=esyt2-b PE=2 SV=1

 Score =  147 bits (370), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 132/528 (25%), Positives = 244/528 (46%), Gaps = 88/528 (16%)

Query: 60  PPWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTL 119
           P WV F   ++  WLN  +  +WP+I +   +L R  +EP +     + L++ SF+K+ +
Sbjct: 116 PAWVHFPDIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAVRGAN-AHLSTFSFTKIDM 174

Query: 120 GTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIR---TRVGVGLPVQVKNIGF 176
           G+   +  GV +      +  I ++L++ + G   I L+++    R G      VK+I  
Sbjct: 175 GSQPLRINGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRAG------VKSIQL 228

Query: 177 TGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGG--DISSIPGISDAIEETIID 234
            G  R+I +PL+ + P  GA++     K  L+     +    D+  + G+SD I   I+D
Sbjct: 229 HGTMRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGLTNMLDMPGLNGLSDTI---ILD 285

Query: 235 AIEDSITWPVRQIIPILPGDYSDLELK---PCGTLDVKLVQAKELTNKD------LIGKS 285
            I + +  P R  +P++  D    +L+   P G L +  ++A++L  KD      + GKS
Sbjct: 286 IISNYLVLPNRITVPLV-SDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKS 344

Query: 286 DPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE 345
           DP+ V+    L +++  SK I   LNP WNE +E  V +   Q L + +FD++      +
Sbjct: 345 DPYGVVR---LGNQVFQSKVIKENLNPKWNEVYEALVHEHPGQELEIELFDEDTD--KDD 399

Query: 346 IIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFN 405
            +G   I L E+E  +V D W  L        D    G++HL+L +           P +
Sbjct: 400 FLGSLLIDLVEVEKERVVDEWFTL--------DEATSGKLHLKLEWL---------TPKS 442

Query: 406 SDYSLTTLEKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDL---- 461
           +  +L  + KS+K++  +A             +D +   +L + + +A +LP   L    
Sbjct: 443 TTENLDQVLKSIKADKDQA-------------NDGLSAALLILYLDSARSLPNNPLEINH 489

Query: 462 -----------------IGKA-DPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVED 503
                            IG + +P+V+  +      +K  V + T  PVW QTF F V +
Sbjct: 490 DGMKKAAVEKAKKAGKKIGSSPNPYVLFSVGHTVQESK--VKYKTAEPVWEQTFTFFVHN 547

Query: 504 GQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGE--IQDSFHIDGT 549
            + + L ++V D +   ++ MG   + L++++   +  +   FH++ +
Sbjct: 548 PKRQDLEVEVKDEN--HQNSMGNIKIPLSQILASEDLTLNQRFHLNNS 593

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus laevis (taxid: 8355)

>sp|A0FGR8|ESYT2_HUMAN Extended synaptotagmin-2 OS=Homo sapiens GN=ESYT2 PE=1 SV=1

 Score =  145 bits (366), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 121/470 (25%), Positives = 219/470 (46%), Gaps = 61/470 (12%)

Query: 60  PPWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTL 119
           P WV F   ++  WLN  +  +WPFI +   +L R  +EP +     + L++ SF+K+ +
Sbjct: 184 PAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVRGAN-THLSTFSFTKVDV 242

Query: 120 GTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIR---TRVGVGLPVQVKNIGF 176
           G    +  GV +      +  I ++L++ + GN  I L+I+    R G      VK+I  
Sbjct: 243 GQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAG------VKSIQI 296

Query: 177 TGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGG--DISSIPGISDAIEETIID 234
            G  R+I +PL+ + P  GA++     K  L+     +    D+  + G+SD I   I+D
Sbjct: 297 HGTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLTNLLDVPGLNGLSDTI---ILD 353

Query: 235 AIEDSITWPVRQIIPILPGDYSDLELK---PCGTLDVKLVQAKELTNKD------LIGKS 285
            I + +  P R  +P++  +    +L+   P G L +  ++A++L  KD      + GKS
Sbjct: 354 IISNYLVLPNRITVPLV-SEVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKS 412

Query: 286 DPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE 345
           DP+ +I V    +++  S+ I   L+P WNE +E  V +   Q L + +FD++      +
Sbjct: 413 DPYGIIRV---GNQIFQSRVIKENLSPKWNEVYEALVYEHPGQELEIELFDEDPD--KDD 467

Query: 346 IIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFN 405
            +G   I L E+E  ++ D W  L        D   +G++HL L +        + N  N
Sbjct: 468 FLGSLMIDLIEVEKERLLDEWFTL--------DEVPKGKLHLRLEWLTL-----MPNASN 514

Query: 406 SDYSLTTLEKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKA 465
            D  LT +                 K    + +D +   +L + + +A NLP    I  +
Sbjct: 515 LDKVLTDI-----------------KADKDQANDGLSSALLILYLDSARNLPSGKKI-SS 556

Query: 466 DPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYD 515
           +P  V+Q+       ++++ + T  PVW + F F + + + + L ++V D
Sbjct: 557 NPNPVVQMSVGHKAQESKIRYKTNEPVWEENFTFFIHNPKRQDLEVEVRD 606

May play a role as calcium-regulated intrinsic membrane protein.

Homo sapiens (taxid: 9606)

>sp|Q5FWL4|EST2A_XENLA Extended synaptotagmin-2-A OS=Xenopus laevis GN=esyt2-a PE=2 SV=1

 Score =  145 bits (365), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 141/582 (24%), Positives = 264/582 (45%), Gaps = 91/582 (15%)

Query: 8   FFGISFGIGLMVAYARYENVRSR--RRAELANIVAAFSRMTVQDSRKLIPPEFYPPWVVF 65
           +FG+SF   L+         R++  + + L   +A F     +  +  I     P WV F
Sbjct: 59  YFGLSFSWLLIALVLLLWWRRNKGNKNSRLYRALA-FLENEEKSVKHHIASTDLPAWVHF 117

Query: 66  QQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQ 125
              ++  WLN  +  +WP+I +   +L R  +EP +     + L++ +F+K+ +G+   +
Sbjct: 118 PDIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAVRGAN-AHLSTFNFTKIDMGSQPLR 176

Query: 126 FTGVAIVESESGEEGITMELEMQWDGNPNIVLDIR---TRVGVGLPVQVKNIGFTGVFRL 182
             GV +      +  I ++L++ + G   I L+++    R G      VK+I   G  R+
Sbjct: 177 INGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRAG------VKSIQLHGTMRV 230

Query: 183 IFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGG--DISSIPGISDAIEETIIDAIEDSI 240
           I +PL+ + P  GA++     K  L+     +    D+  + G+SD I   I+D I + +
Sbjct: 231 ILEPLIGDVPIVGALSIFFLRKPLLEINWTGLTNMLDMPGLNGLSDTI---ILDIISNYL 287

Query: 241 TWPVRQIIPILPGDYSDLELK---PCGTLDVKLVQAKELTNKD------LIGKSDPFVVI 291
             P R  +P++  D    +L+   P G L +  ++A++L  KD      + GKSDP+ V+
Sbjct: 288 VLPNRITVPLV-SDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPYGVV 346

Query: 292 FVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQ 351
               L +++  SK I   LNP WNE +E  V +   Q L + +FD++      + +G   
Sbjct: 347 R---LGNQVFQSKVIKENLNPKWNEVYEALVHEHPGQELEIELFDED--TDKDDFLGSLL 401

Query: 352 IALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLT 411
           I L E+E  +V D W  L        D    G++HL+L +           P ++  +L 
Sbjct: 402 IDLVEVEKERVVDEWFSL--------DEATSGKLHLKLEWL---------TPNSTTDNLD 444

Query: 412 TLEKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDL---------- 461
            + KS+K++  +A             +D +   +L + + +A +LP   L          
Sbjct: 445 QVLKSIKADKDQA-------------NDGLSSALLILYLDSARSLPNNPLEINHDGMKKA 491

Query: 462 -----------IGKA-DPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEML 509
                      IG + +P+V+  +  A   +K  V + T  P+W QTF F V + + + L
Sbjct: 492 AVEKAKKAGKKIGSSPNPYVLFSVGHAVQESK--VKYKTAEPLWEQTFTFFVHNPKRQDL 549

Query: 510 ILDVYDHDTFGKDKMGKCIMTLTRVMMEGEI--QDSFHIDGT 549
            ++V D +   +  MG   + L++++   ++     FH++ +
Sbjct: 550 EVEVKDEN--HQSSMGNLKIPLSQILASEDLTMNQRFHLNNS 589

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	570
224141919	566	plant synaptotagmin [Populus trichocarpa	0.992	1.0	0.759	0.0
297807143	569	plant synaptotagmin [Arabidopsis lyrata	0.998	1.0	0.733	0.0
186522051	569	calcium-dependent lipid-binding domain-c	0.998	1.0	0.726	0.0
225430336	570	PREDICTED: extended synaptotagmin-1 isof	0.987	0.987	0.720	0.0
255548860	543	calcium lipid binding protein, putative	0.952	1.0	0.738	0.0
356518238	574	PREDICTED: extended synaptotagmin-3-like	0.991	0.984	0.722	0.0
9795162	574	CLB1-like protein [Arabidopsis thaliana]	0.994	0.987	0.712	0.0
359475833	555	PREDICTED: extended synaptotagmin-1 isof	0.973	1.0	0.718	0.0
449525058	569	PREDICTED: synaptotagmin-4-like [Cucumis	0.996	0.998	0.707	0.0
255579863	558	calcium lipid binding protein, putative	0.978	1.0	0.706	0.0

>gi|224141919|ref|XP_002324308.1| plant synaptotagmin [Populus trichocarpa] gi|222865742|gb|EEF02873.1| plant synaptotagmin [Populus trichocarpa]

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/569 (75%), Positives = 497/569 (87%), Gaps = 3/569 (0%)

Query: 1   MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYP 60
           MSF  GM  GIS GIGL+VA+A+YEN+RS RR++LA  VAAF+RMTVQDSRK++P EFYP
Sbjct: 1   MSFFIGMIIGISVGIGLIVAFAKYENIRSMRRSQLAKTVAAFARMTVQDSRKILPDEFYP 60

Query: 61  PWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLG 120
           PWVVF QRQKL WLN QLDK+WP+++EAAS+LIRSNVEPILEQY P+I +S+ FSKLTLG
Sbjct: 61  PWVVFSQRQKLTWLNAQLDKIWPYVDEAASDLIRSNVEPILEQYTPAIFSSMKFSKLTLG 120

Query: 121 TVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
           TVAPQFTGV I+E ESG++GITMELEMQWDGNPNIVLDI TRVGV LP+QVKNIGFTGVF
Sbjct: 121 TVAPQFTGVCIIEEESGDKGITMELEMQWDGNPNIVLDINTRVGVALPIQVKNIGFTGVF 180

Query: 181 RLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSI 240
           RLIFKPL ++FP FGAV+YSLREKK LDFTLKVVGG IS+IPG+SDAIEETI DAIEDSI
Sbjct: 181 RLIFKPLAEDFPGFGAVSYSLREKKKLDFTLKVVGGQISAIPGLSDAIEETIKDAIEDSI 240

Query: 241 TWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRM 300
           TWPVR+I+ ILPGDYSDLELKP GTLDVKLVQ K+LTNKD++GKSDPF V+F+RPLR RM
Sbjct: 241 TWPVRKIVSILPGDYSDLELKPVGTLDVKLVQGKDLTNKDIVGKSDPFAVLFIRPLRSRM 300

Query: 301 KTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
           KTSKTI+N+LNPIWNEHFEF VEDASTQHLTVRVFDDEG + A E+IG A +ALK+LEPG
Sbjct: 301 KTSKTISNQLNPIWNEHFEFVVEDASTQHLTVRVFDDEG-VQAAELIGCALVALKDLEPG 359

Query: 361 KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSE 420
           KVKDVWLKLVKD+++QRD KNRGQVHLELLYCP+GTESS KNPFN D+ +TTLEK+++S 
Sbjct: 360 KVKDVWLKLVKDLEIQRDNKNRGQVHLELLYCPYGTESSFKNPFNPDFQMTTLEKAIRSG 419

Query: 421 TSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA 480
           T        G+  T  K +VIVRGVLS+TVIAAENLP  DL GKADP+VVL +KK+  +A
Sbjct: 420 TDGTGDPNSGR--TSPKKNVIVRGVLSVTVIAAENLPATDLNGKADPYVVLIMKKSEKKA 477

Query: 481 KTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEI 540
           KTRV    LNPVWNQTF+FVVED  H+MLI +V+DHDTFGKDKMG+CIMTLTRV++EGE 
Sbjct: 478 KTRVLTKNLNPVWNQTFEFVVEDAIHDMLIAEVWDHDTFGKDKMGRCIMTLTRVLLEGEF 537

Query: 541 QDSFHIDGTKSGKLFLNLKWTPQLVLRDS 569
           QDSF +DG KSGKL L+L+WTPQL  RDS
Sbjct: 538 QDSFPLDGAKSGKLLLHLQWTPQLKFRDS 566

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807143|ref|XP_002871455.1| plant synaptotagmin [Arabidopsis lyrata subsp. lyrata] gi|297317292|gb|EFH47714.1| plant synaptotagmin [Arabidopsis lyrata subsp. lyrata]

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/570 (73%), Positives = 499/570 (87%), Gaps = 1/570 (0%)

Query: 1   MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYP 60
           M FL+G+F GI+   GL+VA+ARY NVRS RRA+LA  +AAF+RMTVQDSRKL+P +FYP
Sbjct: 1   MGFLFGLFIGIAVSFGLVVAFARYSNVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYP 60

Query: 61  PWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLG 120
            W+VF QRQKLNWLN +L+K+WP++NEAASELI+S+VEP+LEQY P++LASL FSK TLG
Sbjct: 61  SWIVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLG 120

Query: 121 TVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
           TVAPQFTGV+I+ESESG  GITMELEMQWDGNP IVLDI+T +GV LP++VKNIGFTGVF
Sbjct: 121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDIKTLLGVALPIEVKNIGFTGVF 180

Query: 181 RLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSI 240
           RLIFKPL+DEFPCFGA++YSLREKK LDFTLKV+GG+++SIPGISDAIEETI DAIEDSI
Sbjct: 181 RLIFKPLIDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSI 240

Query: 241 TWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRM 300
           TWPVR+IIPILPGDYSDLELKP G LDVKLVQAK+L NKD+IGKSDP+ V+F+RPLRD+ 
Sbjct: 241 TWPVRKIIPILPGDYSDLELKPVGKLDVKLVQAKDLANKDMIGKSDPYAVVFIRPLRDKT 300

Query: 301 KTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
           K +KTI+N LNPIWNEHFEF VED STQHLTVRVFDDEG + + ++IG AQ+ L EL PG
Sbjct: 301 KRTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEG-VGSSQLIGAAQVPLNELVPG 359

Query: 361 KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSE 420
           KVKD+WLKLVKD+++QRDTKNRGQV LELLYCP G E  LKNPFN DYSLT LEK LK E
Sbjct: 360 KVKDIWLKLVKDLEIQRDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYSLTILEKVLKPE 419

Query: 421 TSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA 480
           +  ++A ++ K AT KK DVIVRGVLS+TV+AAE+LP VD +GKADPFVV+ LKK+ +++
Sbjct: 420 SEDSDATDVKKPATSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADPFVVITLKKSESKS 479

Query: 481 KTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEI 540
           KTRV  D+LNPVWNQTFDFVVED  H++L+L+V+DHD FGKDK+G+ IMTLTRVM+EGE 
Sbjct: 480 KTRVVPDSLNPVWNQTFDFVVEDALHDLLMLEVWDHDKFGKDKIGRVIMTLTRVMLEGEF 539

Query: 541 QDSFHIDGTKSGKLFLNLKWTPQLVLRDSS 570
           Q+ F +DG KSGKL ++LKWTP+L LRD+S
Sbjct: 540 QEWFELDGAKSGKLCVHLKWTPRLKLRDAS 569

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186522051|ref|NP_196671.2| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] gi|408407811|sp|A0JJX5.1|SYT4_ARATH RecName: Full=Synaptotagmin-4; AltName: Full=NTMC2T2.2; AltName: Full=Synaptotagmin D gi|117557355|emb|CAL64988.1| NTMC2Type2.2 protein [Arabidopsis thaliana] gi|332004252|gb|AED91635.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana]

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/570 (72%), Positives = 495/570 (86%), Gaps = 1/570 (0%)

Query: 1   MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYP 60
           M FL+G+F GI+   GL+VA+ARY +VRS RRA+LA  +AAF+RMTVQDSRKL+P +FYP
Sbjct: 1   MGFLFGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYP 60

Query: 61  PWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLG 120
            WVVF QRQKLNWLN +L+K+WP++NEAASELI+S+VEP+LEQY P++LASL FSK TLG
Sbjct: 61  SWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLG 120

Query: 121 TVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
           TVAPQFTGV+I+ESESG  GITMELEMQWDGNP IVLD++T +GV LP++VKNIGFTGVF
Sbjct: 121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVF 180

Query: 181 RLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSI 240
           RLIFKPLVDEFPCFGA++YSLREKK LDFTLKV+GG+++SIPGISDAIEETI DAIEDSI
Sbjct: 181 RLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSI 240

Query: 241 TWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRM 300
           TWPVR+IIPILPGDYSDLELKP G LDVK+VQAK+L NKD+IGKSDP+ ++F+RPL DR 
Sbjct: 241 TWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRT 300

Query: 301 KTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
           K +KTI+N LNPIWNEHFEF VED STQHLTVRVFDDEG + + ++IG AQ+ L EL PG
Sbjct: 301 KKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEG-VGSSQLIGAAQVPLNELVPG 359

Query: 361 KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSE 420
           KVKD+WLKLVKD+++QRDTKNRGQV LELLYCP G E  LKNPFN DYSLT LEK LK E
Sbjct: 360 KVKDIWLKLVKDLEIQRDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYSLTILEKVLKPE 419

Query: 421 TSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA 480
           +  ++A ++ K+ T KK DVIVRGVLS+TV+AAE+LP VD +GKAD FVV+ LKK+  ++
Sbjct: 420 SEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFVVITLKKSETKS 479

Query: 481 KTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEI 540
           KTRV  D+LNPVWNQTFDFVVED  H++L L+V+DHD FGKDK+G+ IMTLTRVM+EGE 
Sbjct: 480 KTRVVPDSLNPVWNQTFDFVVEDALHDLLTLEVWDHDKFGKDKIGRVIMTLTRVMLEGEF 539

Query: 541 QDSFHIDGTKSGKLFLNLKWTPQLVLRDSS 570
           Q+ F +DG KSGKL ++LKWTP+L LRD+S
Sbjct: 540 QEWFELDGAKSGKLCVHLKWTPRLKLRDAS 569

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430336|ref|XP_002285251.1| PREDICTED: extended synaptotagmin-1 isoform 1 [Vitis vinifera] gi|296082062|emb|CBI21067.3| unnamed protein product [Vitis vinifera]

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/576 (72%), Positives = 499/576 (86%), Gaps = 13/576 (2%)

Query: 1   MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYP 60
           MSF +G+  GI+ GI ++V +AR  N+RS+ R +LA  VAAF+RMTVQDSRK++PP+FYP
Sbjct: 1   MSFFFGIVIGIACGIAVVVVFARLANLRSKSRCDLATTVAAFARMTVQDSRKILPPQFYP 60

Query: 61  PWVVFQQRQKLN-------WLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLS 113
            WVVF Q+QKL+       WLN  L K+WP+++EAASELIRSNVEPILEQYRP IL++L 
Sbjct: 61  SWVVFSQQQKLSYMNGCLTWLNSHLRKIWPYVDEAASELIRSNVEPILEQYRPVILSALK 120

Query: 114 FSKLTLGTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKN 173
           FSKLTLGTVAPQFTGV+I+E E+GE  ++MELEMQWDGNPNIVLDI+TRVGVGLPVQVKN
Sbjct: 121 FSKLTLGTVAPQFTGVSILEGEAGE--VSMELEMQWDGNPNIVLDIKTRVGVGLPVQVKN 178

Query: 174 IGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETII 233
           IGFTGVFRLIFKP+V+EFPCFGAV YSLREKK+LDF LKVVGGDI+++PGISDAIEETI+
Sbjct: 179 IGFTGVFRLIFKPMVEEFPCFGAVCYSLREKKNLDFKLKVVGGDITALPGISDAIEETIL 238

Query: 234 DAIEDSITWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFV 293
           DAIEDSITWPVR+I+PI+PGDYSDLELKP GTL+VKLVQA++LTNKDLIGKSDP+ V+FV
Sbjct: 239 DAIEDSITWPVRKIVPIIPGDYSDLELKPVGTLEVKLVQARDLTNKDLIGKSDPYAVLFV 298

Query: 294 RPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIA 353
           RP+RDRMKTSKTINNELNPIWNEHFEF VEDASTQHLTVR+FDDEG + A E+IG AQ+ 
Sbjct: 299 RPIRDRMKTSKTINNELNPIWNEHFEFIVEDASTQHLTVRIFDDEG-VQASELIGCAQVR 357

Query: 354 LKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTL 413
           LK+LEPGKVKDVWLKLVKD+ VQRD K RG+V LELLYCPFG ES   NPF  +  LT+L
Sbjct: 358 LKDLEPGKVKDVWLKLVKDLDVQRDKKYRGEVRLELLYCPFGMESVFTNPFRPNL-LTSL 416

Query: 414 EKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQL 473
           EK LK++ +  EA ++ K  + KK D+IVRGVLS+TVI+AENLP VDLIGKADP+V L +
Sbjct: 417 EKVLKADGT--EADDIKKSHSLKKRDIIVRGVLSVTVISAENLPVVDLIGKADPYVELTM 474

Query: 474 KKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTR 533
           KK+  + +TRV +++LNP+WNQTFDFVVEDG H+MLILDV+DHDTFGKDK+G+CI TLTR
Sbjct: 475 KKSNTKHRTRVVNNSLNPIWNQTFDFVVEDGLHDMLILDVWDHDTFGKDKIGRCIFTLTR 534

Query: 534 VMMEGEIQDSFHIDGTKSGKLFLNLKWTPQLVLRDS 569
           V++EGE +D+F ++G KSG L L+LKW+PQ + RD+
Sbjct: 535 VILEGEFRDNFPLEGAKSGSLNLHLKWSPQPIFRDT 570

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548860|ref|XP_002515486.1| calcium lipid binding protein, putative [Ricinus communis] gi|223545430|gb|EEF46935.1| calcium lipid binding protein, putative [Ricinus communis]

 Score =  864 bits (2233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/569 (73%), Positives = 485/569 (85%), Gaps = 26/569 (4%)

Query: 1   MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYP 60
           MSFL GM  G+S GIGL+VAYARY+N+RS RR++LA  VAAF+RM VQDSRKL+P E YP
Sbjct: 1   MSFLVGMIIGMSIGIGLVVAYARYQNIRSLRRSQLAKTVAAFARMKVQDSRKLLPGESYP 60

Query: 61  PWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLG 120
            WV                        AASELIR+NVEP+LEQYRP+IL+SL FSKLTLG
Sbjct: 61  SWV------------------------AASELIRTNVEPVLEQYRPAILSSLKFSKLTLG 96

Query: 121 TVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
           TVAPQFTG++I+E ESG   +TMELEMQWDGNPNIVLDI TRVGV LP+QVKNIGFTGVF
Sbjct: 97  TVAPQFTGISILEDESGAGSVTMELEMQWDGNPNIVLDINTRVGVALPIQVKNIGFTGVF 156

Query: 181 RLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSI 240
           RLIFKPLV+EFP FGA++YSLR KK LDF LKVVGG+IS+IPGISDAIEETI DAIEDSI
Sbjct: 157 RLIFKPLVEEFPGFGAISYSLRHKKKLDFKLKVVGGEISAIPGISDAIEETIRDAIEDSI 216

Query: 241 TWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRM 300
           TWPVR+I+PILPGDYSDLE+KP GTL+VKLVQ KELTNKD+IGKSDP+ V+F+RPLRDRM
Sbjct: 217 TWPVRKIVPILPGDYSDLEVKPVGTLEVKLVQGKELTNKDIIGKSDPYAVVFIRPLRDRM 276

Query: 301 KTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
           KTSK INN+LNP+WNEHFEF VED STQHLTVRVFDDEG + A E IG AQ+ALK+LEPG
Sbjct: 277 KTSKVINNQLNPLWNEHFEFIVEDPSTQHLTVRVFDDEG-VQASEFIGCAQVALKDLEPG 335

Query: 361 KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSE 420
           KVKDVWLKLVKD++VQRDTK RGQV LELLYCPFGTESSLKNPFN DY LTTLEK++KS 
Sbjct: 336 KVKDVWLKLVKDLEVQRDTKYRGQVQLELLYCPFGTESSLKNPFNPDYQLTTLEKAIKSG 395

Query: 421 TSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA 480
              A+ A LG+  +QKKS VIVRGVLS++V+AAENLP VDL+GKADP+VVLQ+KK+  + 
Sbjct: 396 AEAADDATLGRSNSQKKS-VIVRGVLSVSVVAAENLPAVDLMGKADPYVVLQMKKSETKV 454

Query: 481 KTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEI 540
           KTRV +++LNPVWNQTFDFVVED  H++LIL+V+DHDTFGKDK+G+ IMTLTRV++EGE 
Sbjct: 455 KTRVVNESLNPVWNQTFDFVVEDALHDLLILEVWDHDTFGKDKIGRVIMTLTRVILEGEF 514

Query: 541 QDSFHIDGTKSGKLFLNLKWTPQLVLRDS 569
           Q+SF IDG KSGKLFL+LKWTPQL  R++
Sbjct: 515 QESFPIDGAKSGKLFLHLKWTPQLKFRET 543

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518238|ref|XP_003527786.1| PREDICTED: extended synaptotagmin-3-like [Glycine max]

 Score =  860 bits (2222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/576 (72%), Positives = 503/576 (87%), Gaps = 11/576 (1%)

Query: 1   MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYP 60
           M F+ GM  GI+ GI L+VA+AR  +VRS+RR++LA  +A F+RMTV+DSRK++PP+FYP
Sbjct: 1   MGFISGMIVGIAIGIVLIVAFARQGSVRSKRRSDLAKTIAQFARMTVEDSRKILPPKFYP 60

Query: 61  PWVVFQQRQKLN--------WLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASL 112
            WVVF +RQKL+        WLN Q++K+WPF+NEAASELIR+NVEPILEQYRP IL+SL
Sbjct: 61  SWVVFTRRQKLSSYIHFLLSWLNSQVEKIWPFVNEAASELIRTNVEPILEQYRPIILSSL 120

Query: 113 SFSKLTLGTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVK 172
           +FSKLTLGTVAPQFTGV IVE  SG EG+TM+LEMQWDGNPNIVLDI+TRVGV LPVQVK
Sbjct: 121 TFSKLTLGTVAPQFTGVTIVEENSGPEGVTMDLEMQWDGNPNIVLDIKTRVGVVLPVQVK 180

Query: 173 NIGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETI 232
           NIGFTGVFRLIFKPLVDEFP FGAV +SL+EKKDLDFTLKV+GGD+S++PGISDAIEETI
Sbjct: 181 NIGFTGVFRLIFKPLVDEFPAFGAVCFSLKEKKDLDFTLKVIGGDLSTLPGISDAIEETI 240

Query: 233 IDAIEDSITWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIF 292
            DAIEDSITWPVR++IPILPGDYS+LELKP G L+VKLVQAK LTNKD++GKSDP+ VIF
Sbjct: 241 RDAIEDSITWPVRKVIPILPGDYSNLELKPVGKLEVKLVQAKNLTNKDIVGKSDPYAVIF 300

Query: 293 VRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQI 352
           VRPLRDR KTSK +NN+LNP+WNEHFEF +EDASTQHLTVR+FDDEG + A E+IG AQ+
Sbjct: 301 VRPLRDRTKTSKIMNNQLNPVWNEHFEFIIEDASTQHLTVRIFDDEG-VQASELIGCAQV 359

Query: 353 ALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTT 412
           +LK+LEPGKVKDVWLKLVKD++V RD K RG+VHLELLYCPFG ES+++NPF+ D+SLTT
Sbjct: 360 SLKDLEPGKVKDVWLKLVKDLEVHRDNKYRGEVHLELLYCPFGVESAIRNPFDPDFSLTT 419

Query: 413 LEKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQ 472
            EK+LKS T  AEA +L  I ++++++VIVRGVLS+TVI+AE+LP VDL+GKADPFVVL 
Sbjct: 420 FEKTLKSGTGDAEAEDL--IGSRRRNNVIVRGVLSVTVISAEDLPAVDLMGKADPFVVLL 477

Query: 473 LKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLT 532
           LKK   + KTRV +++LNPVWNQTFDFVVEDG HEMLIL+VYDHDTFGK+K+G+ I+TLT
Sbjct: 478 LKKTEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLILEVYDHDTFGKEKIGRVILTLT 537

Query: 533 RVMMEGEIQDSFHIDGTKSGKLFLNLKWTPQLVLRD 568
           +V++EGE  +++ +DG KSG + L+LKWTPQ   RD
Sbjct: 538 KVILEGEYNETYPLDGAKSGNISLHLKWTPQHKFRD 573

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9795162|emb|CAC03458.1| CLB1-like protein [Arabidopsis thaliana]

 Score =  855 bits (2210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/577 (71%), Positives = 494/577 (85%), Gaps = 10/577 (1%)

Query: 1   MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYP 60
           M FL+G+F GI+   GL+VA+ARY +VRS RRA+LA  +AAF+RMTVQDSRKL+P +FYP
Sbjct: 1   MGFLFGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYP 60

Query: 61  PWVVFQQRQKLNW-------LNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLS 113
            WVVF QRQKL++       LN +L+K+WP++NEAASELI+S+VEP+LEQY P++LASL 
Sbjct: 61  SWVVFSQRQKLSYSKCLLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAMLASLK 120

Query: 114 FSKLTLGTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKN 173
           FSK TLGTVAPQFTGV+I+ESESG  GITMELEMQWDGNP IVLD++T +GV LP++VKN
Sbjct: 121 FSKFTLGTVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKN 180

Query: 174 IGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETII 233
           IGFTGVFRLIFKPLVDEFPCFGA++YSLREKK LDFTLKV+GG+++SIPGISDAIEETI 
Sbjct: 181 IGFTGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIR 240

Query: 234 DAIEDSITWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFV 293
           DAIEDSITWPVR+IIPILPGDYSDLELKP G LDVK+VQAK+L NKD+IGKSDP+ ++F+
Sbjct: 241 DAIEDSITWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFI 300

Query: 294 RPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIA 353
           RPL DR K +KTI+N LNPIWNEHFEF VED STQHLTVRVFDDEG + + ++IG AQ+ 
Sbjct: 301 RPLPDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEG-VGSSQLIGAAQVP 359

Query: 354 LKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTL 413
           L EL PGKVKD+WLKLVKD+++QRDTKNRGQ  LELLYCP G E  LKNPFN DYSLT L
Sbjct: 360 LNELVPGKVKDIWLKLVKDLEIQRDTKNRGQ--LELLYCPLGKEGGLKNPFNPDYSLTIL 417

Query: 414 EKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQL 473
           EK LK E+  ++A ++ K+ T KK DVIVRGVLS+TV+AAE+LP VD +GKAD FVV+ L
Sbjct: 418 EKVLKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFVVITL 477

Query: 474 KKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTR 533
           KK+  ++KTRV  D+LNPVWNQTFDFVVED  H++L L+V+DHD FGKDK+G+ IMTLTR
Sbjct: 478 KKSETKSKTRVVPDSLNPVWNQTFDFVVEDALHDLLTLEVWDHDKFGKDKIGRVIMTLTR 537

Query: 534 VMMEGEIQDSFHIDGTKSGKLFLNLKWTPQLVLRDSS 570
           VM+EGE Q+ F +DG KSGKL ++LKWTP+L LRD+S
Sbjct: 538 VMLEGEFQEWFELDGAKSGKLCVHLKWTPRLKLRDAS 574

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475833|ref|XP_003631760.1| PREDICTED: extended synaptotagmin-1 isoform 2 [Vitis vinifera]

 Score =  852 bits (2200), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/569 (71%), Positives = 491/569 (86%), Gaps = 14/569 (2%)

Query: 1   MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYP 60
           MSF +G+  GI+ GI ++V +AR  N+RS+ R +LA  VAAF+RMTVQDSRK++PP+FYP
Sbjct: 1   MSFFFGIVIGIACGIAVVVVFARLANLRSKSRCDLATTVAAFARMTVQDSRKILPPQFYP 60

Query: 61  PWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLG 120
            W        L WLN  L K+WP+++EAASELIRSNVEPILEQYRP IL++L FSKLTLG
Sbjct: 61  SW--------LTWLNSHLRKIWPYVDEAASELIRSNVEPILEQYRPVILSALKFSKLTLG 112

Query: 121 TVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
           TVAPQFTGV+I+E E+GE  ++MELEMQWDGNPNIVLDI+TRVGVGLPVQVKNIGFTGVF
Sbjct: 113 TVAPQFTGVSILEGEAGE--VSMELEMQWDGNPNIVLDIKTRVGVGLPVQVKNIGFTGVF 170

Query: 181 RLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSI 240
           RLIFKP+V+EFPCFGAV YSLREKK+LDF LKVVGGDI+++PGISDAIEETI+DAIEDSI
Sbjct: 171 RLIFKPMVEEFPCFGAVCYSLREKKNLDFKLKVVGGDITALPGISDAIEETILDAIEDSI 230

Query: 241 TWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRM 300
           TWPVR+I+PI+PGDYSDLELKP GTL+VKLVQA++LTNKDLIGKSDP+ V+FVRP+RDRM
Sbjct: 231 TWPVRKIVPIIPGDYSDLELKPVGTLEVKLVQARDLTNKDLIGKSDPYAVLFVRPIRDRM 290

Query: 301 KTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
           KTSKTINNELNPIWNEHFEF VEDASTQHLTVR+FDDEG + A E+IG AQ+ LK+LEPG
Sbjct: 291 KTSKTINNELNPIWNEHFEFIVEDASTQHLTVRIFDDEG-VQASELIGCAQVRLKDLEPG 349

Query: 361 KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSE 420
           KVKDVWLKLVKD+ VQRD K RG+V LELLYCPFG ES   NPF  +  LT+LEK LK++
Sbjct: 350 KVKDVWLKLVKDLDVQRDKKYRGEVRLELLYCPFGMESVFTNPFRPNL-LTSLEKVLKAD 408

Query: 421 TSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA 480
            +  EA ++ K  + KK D+IVRGVLS+TVI+AENLP VDLIGKADP+V L +KK+  + 
Sbjct: 409 GT--EADDIKKSHSLKKRDIIVRGVLSVTVISAENLPVVDLIGKADPYVELTMKKSNTKH 466

Query: 481 KTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEI 540
           +TRV +++LNP+WNQTFDFVVEDG H+MLILDV+DHDTFGKDK+G+CI TLTRV++EGE 
Sbjct: 467 RTRVVNNSLNPIWNQTFDFVVEDGLHDMLILDVWDHDTFGKDKIGRCIFTLTRVILEGEF 526

Query: 541 QDSFHIDGTKSGKLFLNLKWTPQLVLRDS 569
           +D+F ++G KSG L L+LKW+PQ + RD+
Sbjct: 527 RDNFPLEGAKSGSLNLHLKWSPQPIFRDT 555

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525058|ref|XP_004169537.1| PREDICTED: synaptotagmin-4-like [Cucumis sativus]

 Score =  851 bits (2199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/570 (70%), Positives = 494/570 (86%), Gaps = 2/570 (0%)

Query: 1   MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYP 60
           MSF  G+F G+  G+ L++A+AR  N R++ R++LA  +AAF+RMT QDSRK++P EFYP
Sbjct: 1   MSFFSGIFLGVVVGVLLVIAFARAGNARAKHRSDLATTIAAFARMTAQDSRKILPKEFYP 60

Query: 61  PWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLG 120
            WVVF QRQKL WLN QLDK+WP+++ AASELIRSNVEP+LE++RP IL+SL FSKLTLG
Sbjct: 61  SWVVFTQRQKLTWLNLQLDKIWPYVDAAASELIRSNVEPVLEEFRPVILSSLKFSKLTLG 120

Query: 121 TVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
           TVAP FTG++++E E    GIT+ELEMQWDGNPNIVLDI+T++GV LPVQVK+I FTG+F
Sbjct: 121 TVAPSFTGISVLEDEPDTGGITLELEMQWDGNPNIVLDIKTKLGVSLPVQVKDIAFTGLF 180

Query: 181 RLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSI 240
           RLIFKPLVDEFPCFGAV YSLR+KK+LDF LK++GGDISSIPG+SDAIEETI DAIE +I
Sbjct: 181 RLIFKPLVDEFPCFGAVCYSLRKKKNLDFKLKIIGGDISSIPGVSDAIEETIRDAIEGTI 240

Query: 241 TWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRM 300
           TWPVR+I+PIL GDYSDLE+KP GTL+VKLVQAKELTNKD+IGKSDP+ V+FVRPL++RM
Sbjct: 241 TWPVRKIVPILAGDYSDLEVKPVGTLEVKLVQAKELTNKDIIGKSDPYAVLFVRPLKERM 300

Query: 301 KTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
           KTSKTINN+LNPIWNEHF F VEDASTQHLT+RVFDDEG + A E+IG AQ+ALK+LEPG
Sbjct: 301 KTSKTINNQLNPIWNEHFNFIVEDASTQHLTIRVFDDEG-VQASELIGCAQVALKDLEPG 359

Query: 361 KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLK-NPFNSDYSLTTLEKSLKS 419
           KVKDVWLKLVKD+++QRD K RGQVHLELLY P+GT+ SL  NPFN DY+LT++EK+LK 
Sbjct: 360 KVKDVWLKLVKDLEIQRDNKYRGQVHLELLYYPYGTDQSLYINPFNPDYALTSVEKALKM 419

Query: 420 ETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNR 479
             S +E A+ GK ++ KK D IVRGVLS+TVIAAE+LP VD +GKADP+VVL +KK+  +
Sbjct: 420 APSGSEDADSGKPSSPKKRDTIVRGVLSVTVIAAEDLPAVDFMGKADPYVVLIMKKSETK 479

Query: 480 AKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGE 539
            KTRV HDT+NPVWNQTFDF+VED  H+MLI++V+DHDTFGKDK+G+ IMTLTR ++EGE
Sbjct: 480 VKTRVVHDTVNPVWNQTFDFLVEDALHDMLIVEVWDHDTFGKDKLGRVIMTLTRAILEGE 539

Query: 540 IQDSFHIDGTKSGKLFLNLKWTPQLVLRDS 569
           IQD+F ++G KSG++FL+LKW  Q + RD+
Sbjct: 540 IQDNFPLEGAKSGRVFLHLKWAAQPMFRDT 569

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579863|ref|XP_002530768.1| calcium lipid binding protein, putative [Ricinus communis] gi|223529684|gb|EEF31628.1| calcium lipid binding protein, putative [Ricinus communis]

 Score =  850 bits (2196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/569 (70%), Positives = 482/569 (84%), Gaps = 11/569 (1%)

Query: 1   MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYP 60
           MSF +G+  G++ G+ ++V + + EN RS+RR+ELA  VAAF+RMTV+DSRK++P EFYP
Sbjct: 1   MSFFFGLVIGLAVGLAIVVGFVKSENARSKRRSELARTVAAFARMTVEDSRKILPSEFYP 60

Query: 61  PWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLG 120
            W        L WLN  L K+WP++NEAASELI+++VEP+LEQYRP IL+SL FSKLTLG
Sbjct: 61  SW--------LTWLNLHLTKIWPYVNEAASELIKASVEPVLEQYRPIILSSLKFSKLTLG 112

Query: 121 TVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
           TVAPQFTGV+I+E   G  GITMELEM WDGNP+IVLDI+TR+GV LPVQVKNIGFTGVF
Sbjct: 113 TVAPQFTGVSIIED--GGSGITMELEMNWDGNPSIVLDIKTRLGVSLPVQVKNIGFTGVF 170

Query: 181 RLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGISDAIEETIIDAIEDSI 240
           RLIFKPLV+EFPCFGAV +SLR+KK LDFTLKV+GGDIS+IPGI DAIE TI DAIEDSI
Sbjct: 171 RLIFKPLVNEFPCFGAVCFSLRQKKKLDFTLKVIGGDISTIPGIYDAIEGTIRDAIEDSI 230

Query: 241 TWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRM 300
           TWPVR++IPILPGDYSDLELKP G L+VKLVQAKELTNKD+IGKSDP+  +++RP+RDR+
Sbjct: 231 TWPVRKVIPILPGDYSDLELKPVGMLEVKLVQAKELTNKDIIGKSDPYAELYIRPIRDRI 290

Query: 301 KTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
           KTSKTINN+LNPIWNEHFEF VEDASTQHL V++FDDEG + + E+IG AQ+ L EL+PG
Sbjct: 291 KTSKTINNDLNPIWNEHFEFIVEDASTQHLVVKIFDDEG-LQSSELIGCAQVQLCELQPG 349

Query: 361 KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSE 420
           KVKDVWLKLVKD++VQRD +NRGQVHLELLYCPFG E+  KNPF   +S+T+LEK LK  
Sbjct: 350 KVKDVWLKLVKDLEVQRDNRNRGQVHLELLYCPFGMENGFKNPFAPTFSMTSLEKVLKGG 409

Query: 421 TSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA 480
               E  E G+  TQ++ DVIVRGVLS+TVI+AE+LP VDL+GKADP+VVL +KK+  R 
Sbjct: 410 VDGMEITENGQAGTQRRRDVIVRGVLSVTVISAEDLPVVDLMGKADPYVVLTMKKSETRN 469

Query: 481 KTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEI 540
           KTRV +D+LNPVWNQTFDFVVEDG H+MLIL+V+DHDTFGKD MG+CIMTLTRV++EGE 
Sbjct: 470 KTRVVNDSLNPVWNQTFDFVVEDGLHDMLILEVWDHDTFGKDYMGRCIMTLTRVILEGEY 529

Query: 541 QDSFHIDGTKSGKLFLNLKWTPQLVLRDS 569
           +D F IDG KSG L++NLKW PQ + RDS
Sbjct: 530 KDKFPIDGAKSGTLYVNLKWMPQPIYRDS 558

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	570
TAIR|locus:2184931	569	SYTD "AT5G11100" [Arabidopsis	0.998	1.0	0.677	8.7e-214
TAIR|locus:2201036	560	NTMC2T2.1 "AT1G05500" [Arabido	0.982	1.0	0.634	7.6e-199
TAIR|locus:2100992	510	NTMC2T4 [Arabidopsis thaliana	0.684	0.764	0.393	4.1e-72
TAIR|locus:2146688	540	SYTC "AT5G04220" [Arabidopsis	0.647	0.683	0.324	2.9e-62
TAIR|locus:2198581	537	SYTB "AT1G20080" [Arabidopsis	0.680	0.722	0.304	1.3e-53
UNIPROTKB|Q9BSJ8	1104	ESYT1 "Extended synaptotagmin-	0.557	0.288	0.276	3e-36
RGD|3053	1088	Esyt1 "extended synaptotagmin-	0.563	0.295	0.261	1.9e-35
MGI|MGI:1098699	891	Esyt3 "extended synaptotagmin-	0.554	0.354	0.270	1.8e-34
WB|WBGene00020443	713	esyt-2 [Caenorhabditis elegans	0.526	0.420	0.277	1.4e-32
UNIPROTKB|A0FGR9	886	ESYT3 "Extended synaptotagmin-	0.554	0.356	0.267	8.3e-32

TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)]

 Score = 2066 (732.3 bits), Expect = 8.7e-214, P = 8.7e-214
 Identities = 386/570 (67%), Positives = 463/570 (81%)

Query:     1 MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYP 60
             M FL+G+F GI+   GL+VA+ARY +VRS RRA+LA  +AAF+RMTVQDSRKL+P +FYP
Sbjct:     1 MGFLFGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYP 60

Query:    61 PWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLG 120
              WVVF QRQKLNWLN +L+K+WP++NEAASELI+S+VEP+LEQY P++LASL FSK TLG
Sbjct:    61 SWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLG 120

Query:   121 TVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
             TVAPQFTGV+I+ESESG  GITMELEMQWDGNP IVLD++T +GV LP++VKNIGFTGVF
Sbjct:   121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVF 180

Query:   181 RLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGXXXXXXXXXXXXXXXXX 240
             RLIFKPLVDEFPCFGA++YSLREKK LDFTLKV+GG+++SIPG                 
Sbjct:   181 RLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSI 240

Query:   241 XWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRM 300
              WPVR+IIPILPGDYSDLELKP G LDVK+VQAK+L NKD+IGKSDP+ ++F+RPL DR 
Sbjct:   241 TWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRT 300

Query:   301 KTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
             K +KTI+N LNPIWNEHFEF VED STQHLTVRVFDDEG + + ++IG AQ+ L EL PG
Sbjct:   301 KKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEG-VGSSQLIGAAQVPLNELVPG 359

Query:   361 XXXXXXXXXXXXXXXQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSE 420
                            QRDTKNRGQV LELLYCP G E  LKNPFN DYSLT LEK LK E
Sbjct:   360 KVKDIWLKLVKDLEIQRDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYSLTILEKVLKPE 419

Query:   421 TSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA 480
             +  ++A ++ K+ T KK DVIVRGVLS+TV+AAE+LP VD +GKAD FVV+ LKK+  ++
Sbjct:   420 SEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFVVITLKKSETKS 479

Query:   481 KTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEI 540
             KTRV  D+LNPVWNQTFDFVVED  H++L L+V+DHD FGKDK+G+ IMTLTRVM+EGE 
Sbjct:   480 KTRVVPDSLNPVWNQTFDFVVEDALHDLLTLEVWDHDKFGKDKIGRVIMTLTRVMLEGEF 539

Query:   541 QDSFHIDGTKSGKLFLNLKWTPQLVLRDSS 570
             Q+ F +DG KSGKL ++LKWTP+L LRD+S
Sbjct:   540 QEWFELDGAKSGKLCVHLKWTPRLKLRDAS 569

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)]

 Score = 1925 (682.7 bits), Expect = 7.6e-199, P = 7.6e-199
 Identities = 361/569 (63%), Positives = 459/569 (80%)

Query:     1 MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYP 60
             M F+ G+  G+  GI +++ + + EN RS+ R+ELAN VAAF+RMTV+DSRKL+PPEFYP
Sbjct:     1 MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60

Query:    61 PWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLG 120
              WVVF +RQKL WLN+ L K+WP+++EAASELI+++VEP+LEQYRP+I+ASL+FSKLTLG
Sbjct:    61 SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLG 120

Query:   121 TVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
             TVAPQFTGV++++ +  + GIT+EL+MQWDGNPNIVL ++T VGV LP+QVKNIGFTGVF
Sbjct:   121 TVAPQFTGVSVIDGD--KNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVF 178

Query:   181 RLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGXXXXXXXXXXXXXXXXX 240
             RLIF+PLV++FPCFGAV+ SLREKK LDFTLKVVGGDIS+IPG                 
Sbjct:   179 RLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSI 238

Query:   241 XWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRM 300
              WPVR++IPI+PGDYSDLELKP G L+VKLVQAK LTNKDL+GKSDPF  +F+RPLR++ 
Sbjct:   239 TWPVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKT 298

Query:   301 KTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
             K SKTINN+LNPIWNEHFEF VEDASTQHL VR++DDEG + A E+IG AQI L ELEPG
Sbjct:   299 KRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEG-VQASELIGCAQIRLCELEPG 357

Query:   361 XXXXXXXXXXXXXXXQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSE 420
                            QRDTKNRG+VHLELLY P+G+ + + NPF +  S+T+LE+ LK++
Sbjct:   358 KVKDVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGNGIVNPFVTS-SMTSLERVLKND 416

Query:   421 TSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA 480
             T+  E A     +++K+ DVIVRGVLS+TVI+AE +P  DL+GKADP+VVL +KK+G ++
Sbjct:   417 TTDEENA-----SSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKS 471

Query:   481 KTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEI 540
             KTRV +D+LNPVWNQTFDFVVEDG H+ML+L+V+DHDTFGKD +G+CI+TLTRV+ME E 
Sbjct:   472 KTRVVNDSLNPVWNQTFDFVVEDGLHDMLVLEVWDHDTFGKDYIGRCILTLTRVIMEEEY 531

Query:   541 QDSFHIDGTKSGKLFLNLKWTPQLVLRDS 569
             +D + +D +K+GKL L+LKW  Q + RDS
Sbjct:   532 KDWYPLDESKTGKLQLHLKWMAQSIYRDS 560

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0012505 "endomembrane system" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 160/407 (39%), Positives = 233/407 (57%)

Query:     1 MSFLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYP 60
             M  + G+ FGI FG+ LM  ++R    RS +R   A  +     ++  D +K+    F P
Sbjct:     1 MGLISGILFGIIFGVALMAGWSRMMTHRSSKRVAKAVDMKLLGSLSRDDLKKICGDNF-P 59

Query:    61 PWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLG 120
              W+ F   +++ WLN  L K+WP+I EAA+ +IR +VEP+LE YRP  + SL FSKLTLG
Sbjct:    60 QWISFPAFEQVKWLNKLLSKMWPYIAEAATMVIRDSVEPLLEDYRPPGITSLKFSKLTLG 119

Query:   121 TVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
              VAP+  G+ +   + G+  +TM+++++W G+PNIVL + T +   +P+Q+K++    V 
Sbjct:   120 NVAPKIEGIRVQSFKEGQ--VTMDVDLRWGGDPNIVLGV-TALVASIPIQLKDLQVFTVA 176

Query:   181 RLIFKPLVDEFPCFGAVAYSL--REKKDLDFTLKVVGGDISSIPGXXXXXXXXXXXXXXX 238
             R+IF+ L DE PC  AV  +L    K  +D+TLK VGG +++IPG               
Sbjct:   177 RVIFQ-LADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGLSDMIDDTVDTIVKD 235

Query:   239 XXXWPVRQIIPI--LPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPL 296
                WP R ++PI  +P D SDLELKP G L V +V+A  L NK+LIGKSDP+  I++RP+
Sbjct:   236 MLQWPHRIVVPIGGIPVDLSDLELKPQGKLIVTVVKATNLKNKELIGKSDPYATIYIRPV 295

Query:   297 RDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFD-DEGPMLAPEIIGIAQIALK 355
               + KT K I N LNP+W++ FE   ED  TQ LTV VFD D G     E +G+ ++ L 
Sbjct:   296 F-KYKT-KAIENNLNPVWDQTFELIAEDKETQSLTVEVFDKDVGQ---DERLGLVKLPLS 350

Query:   356 ELEPGXXXXXXXXXXXXXXXQR--DTKNRGQVHLELLYCPFGTESSL 400
              LE G                +  D K+RG + L++ Y  F  E  +
Sbjct:   351 SLEAGVTKELELNLLSSLDTLKVKDKKDRGSITLKVHYHEFNKEEQM 397

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008289 "lipid binding" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
 Identities = 125/385 (32%), Positives = 201/385 (52%)

Query:    60 PPWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSI-LASLSFSKLT 118
             P W+     ++++W N  +  +WP++++A   +IRS+V+P+   Y  +  + S+ F  L+
Sbjct:    60 PLWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLS 119

Query:   119 LGTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTG 178
             LGT+ P   GV   E+   E+ +  E  ++W GNPNIVL ++  + + + VQ+ ++ F  
Sbjct:   120 LGTLPPTVHGVKFYETN--EKELLFEPSIKWAGNPNIVLVLKV-LSLRIRVQLVDLQFFA 176

Query:   179 VFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGXXXXXXXXXXXXXXX 238
             + R+  KPL+  FPCFG V  SL EK  +DF LKV+GGD+ SIPG               
Sbjct:   177 IVRVALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSS 236

Query:   239 XXXWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD 298
                WP    IPIL    + ++ KP G L V +++A+ L  KDL+G SDP+V + +   + 
Sbjct:   237 MYHWPQVLEIPILDSSTASVK-KPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKL 295

Query:   299 RMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELE 358
               K +      LNP WNEHF+  V+D ++Q L + VFD +  +   + +G+  I L+++ 
Sbjct:   296 PAKKTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWD-KVGGHDRLGMQMIPLQKIN 354

Query:   359 PGXXXXXXXXXXXXXXXQRDT---KNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEK 415
             PG                 D+   K RG++ ++L Y PF  E S+K    S       EK
Sbjct:   355 PGERKEFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPF-REESIKRRKESRE-----EK 408

Query:   416 SLKSETSRAEAAELGKIATQKKSDV 440
             S + +   ++A  L  +A Q   DV
Sbjct:   409 SSEDDDFLSQAGLLS-VAVQSAKDV 432

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

TAIR|locus:2198581 SYTB "AT1G20080" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
 Identities = 125/410 (30%), Positives = 209/410 (50%)

Query:     1 MSFLYGMF-FGISFGIGLMVAYARYENVRSR--RRAELANIVAAFSRMTVQDSRKLIPPE 57
             +S + G+  FG    IG+++ Y  +   +S      E+  +V   S  T+      + PE
Sbjct:     4 ISTILGVIGFGFGTTIGIVIGYYLFIYFQSTDVEDPEIKPLVELDSE-TIAT----MFPE 58

Query:    58 FYPPWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSI-LASLSFSK 116
               P WV      +++WLN  +  +WP++++A  ++ +S  +PI+ +  P+  + S+ F  
Sbjct:    59 I-PMWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEM 117

Query:   117 LTLGTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGF 176
             LTLG++ P F G+ +  ++  E  I MEL ++W GNPNI++ +    G+   VQV ++  
Sbjct:   118 LTLGSLPPSFQGMKVYATDDKE--IIMELSVKWAGNPNIIV-VAKAFGLKATVQVIDLQV 174

Query:   177 TGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGXXXXXXXXXXXXX 236
                 R+  KPLV  FPCF  +  SL +K  +DF LK++G D+ +IPG             
Sbjct:   175 YATPRITLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQV 234

Query:   237 XXXXXWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPL 296
                  WP    + I+  D S    KP G L VK+++A +L  KDL+G SDP+V + +   
Sbjct:   235 ANMYLWPKTLNVQIM--DPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSG- 291

Query:   297 RDRMKTSKTI--NNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIAL 354
              D++   KT+  ++ LNP WNE F+  V++  +Q L + V+D E  +   + IG+  I L
Sbjct:   292 -DKVPGKKTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWE-QVGKHDKIGMNVIQL 349

Query:   355 KELEPGXXXXXXXXXXXXXXXQRDT--KNRGQVHLELLYCPFGTESSLKN 402
             K+L P                +     K+RGQ+ +E+ Y PF  +   +N
Sbjct:   350 KDLTPEEPKLMTLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPEN 399

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009306 "protein secretion" evidence=IMP

UNIPROTKB|Q9BSJ8 ESYT1 "Extended synaptotagmin-1" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
 Identities = 96/347 (27%), Positives = 166/347 (47%)

Query:     6 GMFFG-ISFGIGLMVAYARY--ENVRSRRRA-ELANIVAAFSRMTVQDSRKLIPPEFYPP 61
             G+  G + FG+ L + + R   E  RS R A +L +     +  T+  S + +P      
Sbjct:    75 GLSVGFVLFGLALYLGWRRVRDEKERSLRAARQLLDDEEQLTAKTLYMSHRELPA----- 129

Query:    62 WVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGT 121
             WV F   +K  WLN  + ++WPF+ +   +L+   V P +    P  L + +F+++ LG 
Sbjct:   130 WVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPH-LQTFTFTRVELGE 188

Query:   122 VAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFR 181
                +  GV +   +  E+ I ++L + + G+  I ++++          VK +   GV R
Sbjct:   189 KPLRIIGVKVHPGQRKEQ-ILLDLNISYVGDVQIDVEVKKYF---CKAGVKGMQLHGVLR 244

Query:   182 LIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGXXXXXXXXXXXXXXXXXX 241
             +I +PL+ + P  GAV+     +  LD     +  ++  IPG                  
Sbjct:   245 VILEPLIGDLPFVGAVSMFFIRRPTLDINWTGMT-NLLDIPGLSSLSDTMIMDSIAAFLV 303

Query:   242 WPVRQIIPILPGDYSDL-ELK---PCGTLDVKLVQAKELTNKD-----LI-GKSDPFVVI 291
              P R ++P++P D  D+ +L+   P G + + L+ A+ L++KD     LI GKSDP+ + 
Sbjct:   304 LPNRLLVPLVP-DLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYAL- 361

Query:   292 FVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDE 338
              VR L  +   S+ I+ ELNP W E +E  V +   Q + V VFD +
Sbjct:   362 -VR-LGTQTFCSRVIDEELNPQWGETYEVMVHEVPGQEIEVEVFDKD 406

GO:0016021 "integral to membrane" evidence=IEA

RGD|3053 Esyt1 "extended synaptotagmin-like protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 305 (112.4 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
 Identities = 90/344 (26%), Positives = 165/344 (47%)

Query:     6 GMFFG-ISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRKLIPPEFYPPWVV 64
             G+  G + FG+ L + + R  + + R       ++    R+T + +  +   E  P WV 
Sbjct:    67 GLSVGFVLFGLALYLGWRRVRDGKERSLRAARQLLDDEERITAE-TLYMSHREL-PAWVS 124

Query:    65 FQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAP 124
             F   +K  WLN  + ++WPF+ +   +L+   V P +    P  L + +F+++ LG    
Sbjct:   125 FPDVEKAEWLNKIVVQVWPFLGQYMEKLLAETVAPAVRGANPH-LQTFTFTRVELGEKPV 183

Query:   125 QFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLIF 184
             +  GV +  S+  ++ I ++L + + G+  I ++++          VK +   GV R+I 
Sbjct:   184 RIIGVKVHPSQRKDQ-ILLDLNVSYVGDLQIDVEVKKYF---CKAGVKGMQLHGVLRVIL 239

Query:   185 KPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSIPGXXXXXXXXXXXXXXXXXXWPV 244
             +PL+ + P  GAV+    ++  LD     +  ++  IPG                   P 
Sbjct:   240 EPLIGDLPIVGAVSMFFIKRPTLDINWTGMT-NLLDIPGLSSLSDTMIMDSIAAFLVLPN 298

Query:   245 RQIIPILPGDYSDL-ELK---PCGTLDVKLVQAKELTNKD-----LI-GKSDPFVVIFVR 294
             R ++P++P D  D+ +L+   P G + + L+ A+ L++KD     LI GKSDP+ ++ V 
Sbjct:   299 RLLVPLVP-DLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVRVG 357

Query:   295 PLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDE 338
                 +   S+ I+ ELNP W E +E  V +   Q + V VFD +
Sbjct:   358 T---QTFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEVFDKD 398

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1098699 Esyt3 "extended synaptotagmin-like protein 3" [Mus musculus (taxid:10090)]

 Score = 327 (120.2 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
 Identities = 92/340 (27%), Positives = 162/340 (47%)

Query:    28 RSRRRAELANIVAAFSRMTVQDSRKLIPPEF----YPPWVVFQQRQKLNWLNYQLDKLWP 83
             R  RR +L  + AAF  +  +  R+ I  E      P W+ F   +++ W N  + ++WP
Sbjct:    77 RRNRRGKLGRLEAAFEFL--EHEREFISRELRGQHLPAWIHFPDVERVEWANKIIIQIWP 134

Query:    84 FINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITM 143
             +++      IR  +EP + + +   L + +F+KL  G   P+  GV +   +     +T+
Sbjct:   135 YLSMIMENKIREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPKVNGVKVHTDKRNRRKVTL 193

Query:   144 ELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLRE 203
             +L++ + G+  I ++++ ++  G    V  +   G  R+I +PL+ + P  GAV     +
Sbjct:   194 DLQICYIGDCEISVELQ-KIRGG----VSGVQLQGTLRVILEPLLVDKPFIGAVTVFFLQ 248

Query:   204 KKDLDFTLKVVGGDISSIPGXXXXXXXXXXXXXXXXXXWPVRQIIPILPG-DYSDLELK- 261
             K  L      +  ++  +PG                   P R  +P+  G D ++L +  
Sbjct:   249 KPHLQINWTGLT-NLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKGLDVTNLRVPL 307

Query:   262 PCGTLDVKLVQAKELTNKD----LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEH 317
             PCG + V L++AK+L  KD    L GKSDP+  + +     R   S+TI   LNP WNE 
Sbjct:   308 PCGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIGLQHCR---SRTIYKNLNPTWNEV 364

Query:   318 FEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL 357
             FEF V +   Q L V ++D++      + +G  QI L ++
Sbjct:   365 FEFMVYEVPGQDLEVDLYDEDTDK--DDFLGSLQICLGDV 402

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00020443 esyt-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 352 (129.0 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
 Identities = 89/321 (27%), Positives = 157/321 (48%)

Query:    44 RMTVQDSRKLIPPEFY--PPWVVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPIL 101
             R T    R++I  +    P WV F   +++ WLN  + +LWP++ E     +   + P +
Sbjct:    58 RATALREREVIMAQLQDLPAWVQFPDTERVEWLNKVIHQLWPYVGEYTKTFMNDFIIPQV 117

Query:   102 EQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRT 161
             +   P +  +  F+K+ +G +  +  G+ +  +  G + I +++++ + G+ +  +    
Sbjct:   118 KAQMPGMFKNFKFTKMDMGDIPCRVGGIKVYTTNVGRDRIIVDMDVAYAGDADFTVSC-- 175

Query:   162 RVGVGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGGDISSI 221
                 G    + NI F+G  R I KPL+   P  G V+ +  E   +DF L  +G ++  +
Sbjct:   176 ---CGFTGGMNNIQFSGKLRAILKPLLPYPPMVGGVSGTFLEMPKMDFNLTGMG-EMVEL 231

Query:   222 PGXXXXXXXXXXXXXXXXXXWPVRQIIPILPG-DYSDLEL-KPCGTLDVKLVQAKELTNK 279
             PG                   P   ++P+ P  D + L   +P G + +K+++AK L N+
Sbjct:   232 PGLIDAIRSVINSQIAALCVLPNEIVVPLAPDVDVTQLYFPEPDGVVRLKIIEAKNLENR 291

Query:   280 DLI----GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVF 335
             D+     GKSDP+  I V       KT +TI+++LNPIWNE+FE  V+ A  Q L + +F
Sbjct:   292 DISFIKKGKSDPYAEIQVGS--QFFKT-RTIDDDLNPIWNEYFEAVVDQADGQKLRIELF 348

Query:   336 D-DEGPMLAPEIIGIAQIALK 355
             D D+G     E +G   + LK
Sbjct:   349 DEDQGK---DEELGRLSVDLK 366

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|A0FGR9 ESYT3 "Extended synaptotagmin-3" [Homo sapiens (taxid:9606)]

 Score = 317 (116.6 bits), Expect = 8.3e-32, Sum P(2) = 8.3e-32
 Identities = 91/340 (26%), Positives = 157/340 (46%)

Query:    28 RSRRRAELANIVAAFSRMTVQDSRKLIPPEF----YPPWVVFQQRQKLNWLNYQLDKLWP 83
             R  RR +L  + AAF  +   + R+ I  E      P W+ F   +++ W N  + + WP
Sbjct:    73 RRNRRGKLGRLAAAFEFL--DNEREFISRELRGQHLPAWIHFPDVERVEWANKIISQTWP 130

Query:    84 FINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITM 143
             +++       R  +EP + + +   L + +F+KL  G   P+  GV    +      +T+
Sbjct:   131 YLSMIMESKFREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPRVNGVKAHTNTCNRRRVTV 189

Query:   144 ELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLRE 203
             +L++ + G+  I ++++ ++  G    V  I   G  R+I +PL+ + P  GAV     +
Sbjct:   190 DLQICYIGDCEISVELQ-KIQAG----VNGIQLQGTLRVILEPLLVDKPFVGAVTVFFLQ 244

Query:   204 KKDLDFTLKVVGGDISSIPGXXXXXXXXXXXXXXXXXXWPVRQIIPILPG-DYSDLELK- 261
             K  L      +  ++   PG                   P R  +P+  G D ++L    
Sbjct:   245 KPHLQINWTGLT-NLLDAPGINDVSDSLLEDLIATHLVLPNRVTVPVKKGLDLTNLRFPL 303

Query:   262 PCGTLDVKLVQAKELTNKD----LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEH 317
             PCG + V L++A++L  KD    L GKSDP+  + +     R   S+TI   LNP WNE 
Sbjct:   304 PCGVIRVHLLEAEQLAQKDNFLGLRGKSDPYAKVSIGLQHFR---SRTIYRNLNPTWNEV 360

Query:   318 FEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL 357
             FEF V +   Q L V ++D++      + +G  QI L ++
Sbjct:   361 FEFMVYEVPGQDLEVDLYDEDTDR--DDFLGSLQICLGDV 398

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A0JJX5	SYT4_ARATH	No assigned EC number	0.7263	0.9982	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	570
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	4e-34
cd00030	102	cd00030, C2, C2 domain	4e-26
pfam00168	85	pfam00168, C2, C2 domain	2e-24
smart00239	101	smart00239, C2, Protein kinase C conserved region	3e-24
smart00239	101	smart00239, C2, Protein kinase C conserved region	3e-23
cd00030	102	cd00030, C2, C2 domain	4e-23
pfam00168	85	pfam00168, C2, C2 domain	5e-21
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	3e-18
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	4e-17
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	4e-17
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	9e-17
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-16
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-16
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	3e-16
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	4e-16
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	6e-16
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	7e-16
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-15
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	5e-15
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	2e-14
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	6e-14
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	1e-13
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	6e-13
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	1e-12
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	2e-12
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	3e-12
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	5e-12
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	6e-12
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	6e-12
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	7e-12
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	8e-12
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	9e-12
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	1e-11
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	3e-11
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	3e-11
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	4e-11
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	4e-11
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	4e-11
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	4e-11
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	4e-11
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	4e-11
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	6e-11
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	6e-11
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	6e-11
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	7e-11
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	9e-11
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	1e-10
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	1e-10
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	1e-10
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	2e-10
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	2e-10
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-10
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	3e-10
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	3e-10
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	4e-10
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	4e-10
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	5e-10
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	6e-10
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	1e-09
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-09
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	1e-09
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-09
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	2e-09
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	2e-09
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	2e-09
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	2e-09
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	2e-09
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	3e-09
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	4e-09
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	6e-09
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	6e-09
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	6e-09
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	8e-09
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	1e-08
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	1e-08
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	1e-08
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-08
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	2e-08
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	2e-08
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	6e-08
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	7e-08
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	9e-08
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	1e-07
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	1e-07
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	1e-07
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	1e-07
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-07
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	2e-07
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	5e-07
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	5e-07
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	7e-07
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	8e-07
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	8e-07
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	8e-07
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	9e-07
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	1e-06
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	2e-06
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	2e-06
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	2e-06
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	3e-06
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	3e-06
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	5e-06
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	6e-06
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	6e-06
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	7e-06
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	9e-06
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	2e-05
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	2e-05
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	2e-05
cd08686	118	cd08686, C2_ABR, C2 domain in the Active BCR (Brea	2e-05
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	3e-05
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	4e-05
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	9e-05
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	9e-05
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	9e-05
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	1e-04
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	1e-04
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	1e-04
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	2e-04
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	2e-04
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	2e-04
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	3e-04
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	3e-04
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	3e-04
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	4e-04
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	7e-04
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	0.001
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	0.002
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	0.002
PLN03008	868	PLN03008, PLN03008, Phospholipase D delta	0.002
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	0.002
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	0.004
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	0.004

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score =  137 bits (348), Expect = 4e-34
 Identities = 115/527 (21%), Positives = 206/527 (39%), Gaps = 95/527 (18%)

Query: 73  WLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIV 132
           WLN  L K WP I  + S+ +   V   L +  PS + +L+  + TLG+  P+  G+   
Sbjct: 225 WLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSY 284

Query: 133 ESESGEEGITMELEMQWD-------------------GNPNIVLDIRTRVGVG---LPVQ 170
            S   +      + M  D                    NP I L ++     G   LP+ 
Sbjct: 285 PSTESD-----TVVMDVDFSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPIL 339

Query: 171 VKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKVVGG-----DISSIPGIS 225
           V+++ F G  R+  + L+ ++P    V++ L E  + DF L  +GG     DI +IPG+S
Sbjct: 340 VEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGVDIFAIPGLS 398

Query: 226 DAIEETIIDAIEDSITWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLI--G 283
             I+E I   +   +  P    I I     +       G ++VK+  A+ L   D    G
Sbjct: 399 RFIQEIINSTLGPMLLPPNSLTIDI-SQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTING 457

Query: 284 KSDPFVVIFVRPLRDRMK-TSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPML 342
             DP++ +      DR+   ++   N LNP+WNE F + + ++ T  L + ++D      
Sbjct: 458 TVDPYITV---TFSDRVIGKTRVKKNTLNPVWNETF-YILLNSFTDPLNLSLYDFNS-FK 512

Query: 343 APEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQ--RDTKNRGQVHLELLYCPFGTESSL 400
           + +++G  Q+ L  L    VK       K+   +  R+TKN G++  +L + P   +   
Sbjct: 513 SDKVVGSTQLDLALLHQNPVK-------KNELYEFLRNTKNVGRLTYDLRFFPVIEDKK- 564

Query: 401 KNPFNSDYSLTTLEKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKV- 459
                    L    + L+   +                     G+L +T+   + L ++ 
Sbjct: 565 --------ELKGSVEPLEDSNT---------------------GILKVTLREVKALDELS 595

Query: 460 DLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTF 519
                    +    K+      T     T +P WN  ++ +V D ++  + +  +D    
Sbjct: 596 SKKDNKSAELYTNAKEV---YSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFD---- 648

Query: 520 GKDKMGKCI----MTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWTP 562
              + GK I     TL  ++                G++F+   W P
Sbjct: 649 --VQSGKVIATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKP 693

Length = 1227

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score =  102 bits (255), Expect = 4e-26
 Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ 505
           L +TVI A NLP  DL GK+DP+V + L     + KT+V  +TLNPVWN+TF+F V D +
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGG-KQKFKTKVVKNTLNPVWNETFEFPVLDPE 59

Query: 506 HEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQD 542
            + L ++V+D D F KD  +G+  + L+ ++  G+  +
Sbjct: 60  SDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGE 97

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 96.6 bits (241), Expect = 2e-24
 Identities = 40/85 (47%), Positives = 57/85 (67%), Gaps = 2/85 (2%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL-KKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG 504
           L +TVI+A+NLP  DL GK+DP+V + L  +  +  KT+V  +TLNPVWN+TF F V   
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 505 QHEMLILDVYDHDTFGKDK-MGKCI 528
           +   L ++VYD+D FGKD  +G+  
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 96.8 bits (241), Expect = 3e-24
 Identities = 38/99 (38%), Positives = 62/99 (62%), Gaps = 2/99 (2%)

Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN-RAKTRVAHDTLNPVWNQTFDFVVED 503
            L++ +I+A NLP  D  GK+DP+V + L      + KT+V  +TLNPVWN+TF+F V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 504 GQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQ 541
            +   L ++VYD D FG+D  +G+  + L+ +++ G  +
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 94.1 bits (234), Expect = 3e-23
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 1/102 (0%)

Query: 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED 324
           TL VK++ A+ L  KD  GKSDP+V + +       K +K + N LNP+WNE FEF V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 325 ASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVW 366
                L + V+D +      + IG   I L +L  G   +  
Sbjct: 61  PELAELEIEVYDKDRFG-RDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 93.7 bits (233), Expect = 4e-23
 Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 4/105 (3%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA 325
           L V +++A+ L  KDL GKSDP+V + +     +   +K + N LNP+WNE FEF V D 
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDP 58

Query: 326 STQHLTVRVFDDEGPMLAPEIIGIAQIALKELE-PGKVKDVWLKL 369
            +  LTV V+D +      + +G  +I L EL   GK  ++WL L
Sbjct: 59  ESDTLTVEVWDKD-RFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 86.9 bits (216), Expect = 5e-21
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA 325
           L V ++ AK L  KDL GKSDP+V + +   +   K +K + N LNP+WNE F F V   
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 326 STQHLTVRVFDDEGPMLAPEIIG 348
               L + V+ D       + IG
Sbjct: 61  ELAELRIEVY-DYDRFGKDDFIG 82

Length = 85

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 80.4 bits (199), Expect = 3e-18
 Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 10/124 (8%)

Query: 444 GVLSITVIAAENLPKVDLI------GKADPFVVLQLKKAGNRA-KTRVAHDTLNPVWNQT 496
           GVL I VI A++L   D        GK+DP+V++++   G +  K++V  + LNP WN+ 
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRV---GAQTFKSKVIKENLNPKWNEV 57

Query: 497 FDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFL 556
           ++ VV++   + L ++++D D    D +G+  + L  V  +G I +   ++  KSG+L L
Sbjct: 58  YEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHL 117

Query: 557 NLKW 560
            L+W
Sbjct: 118 KLEW 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 77.2 bits (191), Expect = 4e-17
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)

Query: 444 GVLSITVIAAENLPKVDLIGKA-DPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVE 502
           GVL++T+ +A  L   D+IG   DP+V   +      A+T+V  DT NPVWN+T   +V 
Sbjct: 2   GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN 61

Query: 503 DGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQD--SFHIDGTKS-GKLFLNL 558
               E L L VYD +   KDK +G     L+ ++   E ++     +   K  G+L  +L
Sbjct: 62  SLT-EPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDL 120

Query: 559 KWTP 562
           ++ P
Sbjct: 121 RFFP 124

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 77.3 bits (191), Expect = 4e-17
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVED 503
           G L + VI A  L   D+ GK+DPF VL+L  A  R +T   + TLNP WN+ F F ++D
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNA--RLQTHTIYKTLNPEWNKIFTFPIKD 58

Query: 504 GQHEMLILDVYDHDTFGK-DKMGKCIMTLTRV 534
             H++L + VYD D   K + +GK  + L  +
Sbjct: 59  -IHDVLEVTVYDEDKDKKPEFLGKVAIPLLSI 89

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 76.1 bits (188), Expect = 9e-17
 Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 10/123 (8%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA 325
           L V ++ A+ L + D  GKSDPFV  ++    +++  +KTI   LNP+WNE FE  V   
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVPVPSR 58

Query: 326 STQHLTVRVFD-DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQ 384
               L V V+D D G     +++G A I L +LEP +  ++ L L             G 
Sbjct: 59  VRAVLKVEVYDWDRGG--KDDLLGSAYIDLSDLEPEETTELTLPLDGQ-----GGGKLGA 111

Query: 385 VHL 387
           V L
Sbjct: 112 VFL 114

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 76.3 bits (188), Expect = 1e-16
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 12/132 (9%)

Query: 264 GTLDVKLVQAKELTNKDL--IGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFT 321
           G L V +V+AK+L  KD    GKSDP+ ++ V   R     ++TI N LNP WN   EF 
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFP 57

Query: 322 VEDASTQHLTVRVFD-DEGPMLAPEIIGIAQIALKEL---EPGKVKDVWLKLVKDVKVQR 377
           +  A  Q L + ++D D       + +G   IAL+E+         D W+ L K  +  +
Sbjct: 58  IFSAQNQLLKLILWDKDR--FAGKDYLGEFDIALEEVFADGKTGQSDKWITL-KSTRPGK 114

Query: 378 DTKNRGQVHLEL 389
            +   G++HL+ 
Sbjct: 115 TSVVSGEIHLQF 126

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 19/132 (14%)

Query: 264 GTLDVKLVQAKELTNKDLI------GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEH 317
           G L + +++A++L  KD        GKSDP+V++ V     +   SK I   LNP WNE 
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEV 57

Query: 318 FEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQR 377
           +E  V++   Q L + +FD++      + +G   I L  +E     D WL L +DVK   
Sbjct: 58  YEAVVDEVPGQELEIELFDEDPD--KDDFLGRLSIDLGSVEKKGFIDEWLPL-EDVK--- 111

Query: 378 DTKNRGQVHLEL 389
                G++HL+L
Sbjct: 112 ----SGRLHLKL 119

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 75.0 bits (185), Expect = 3e-16
 Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 10/128 (7%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
           G L VK+++A  L   D+ GKSDPF V+ +     R++T  TI   LNP WN+ F F ++
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELV--NARLQT-HTIYKTLNPEWNKIFTFPIK 57

Query: 324 DASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRG 383
           D     L V V+ DE     PE +G   I L  ++ G+ K  W  L KD K++   K  G
Sbjct: 58  DI-HDVLEVTVY-DEDKDKKPEFLGKVAIPLLSIKNGERK--WYAL-KDKKLRTRAK--G 110

Query: 384 QVHLELLY 391
            + LE+  
Sbjct: 111 SILLEMDV 118

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 74.9 bits (185), Expect = 4e-16
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 6/89 (6%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNR---AKTRVAHDTLNPVWNQTFDFVVE 502
           L++ V+ A NLP  D  G +DP+V + L + G +    KT V   TLNPV+N+ F F V 
Sbjct: 16  LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75

Query: 503 DGQHEM--LILDVYDHDTFGKD-KMGKCI 528
             Q E   L++ V D D+ G++  +G+ +
Sbjct: 76  AEQLEEVSLVITVVDKDSVGRNEVIGQVV 104

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 73.8 bits (182), Expect = 6e-16
 Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 4/111 (3%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNR-AKTRVAHDTLNPVWNQTFDFVVEDG 504
           L++ VI+AENLP  D  GK+DPFV   L   G +  KT+    TLNPVWN++F+  V   
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVPVPSR 58

Query: 505 QHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKL 554
              +L ++VYD D  GK D +G   + L+ +  E   + +  +DG   GKL
Sbjct: 59  VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKL 109

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 73.8 bits (182), Expect = 7e-16
 Identities = 30/113 (26%), Positives = 64/113 (56%), Gaps = 1/113 (0%)

Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN-RAKTRVAHDTLNPVWNQTFDFVVED 503
           +L++ V+ A N+ K DL+   D +V L L  A + + +T+   +++NPVWN+TF+F ++ 
Sbjct: 1   LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS 60

Query: 504 GQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFL 556
               +L L V D D    D +G  +  ++++ +  +++ +F ++     +L +
Sbjct: 61  QVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEV 113

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 27/125 (21%)

Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNR-AKTRVAHDTLNPVWNQTFDFVVED 503
           + +I ++ AENL      G +DP+V L       R AKTR  +DTLNP W++ F+  V  
Sbjct: 2   LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPA 61

Query: 504 GQHEMLILDVYDHDTFGKDKM-GKCIMTLT-------------------------RVMME 537
           G+   +   V+D    GK  + G+  + L                          RV ME
Sbjct: 62  GEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQGRLLLRVSME 121

Query: 538 GEIQD 542
           GE  D
Sbjct: 122 GERDD 126

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 71.7 bits (176), Expect = 5e-15
 Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 15/130 (11%)

Query: 444 GVLSITVIAAENLPKVDL--IGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVV 501
           GVL + V+ A++L   D    GK+DP+ +L +     R KT+   +TLNP WN   +F +
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQ--RFKTQTIPNTLNPKWNYWCEFPI 58

Query: 502 EDGQHEMLILDVYDHDTF-GKDKMGKCIMTLTRVMMEGEIQ----------DSFHIDGTK 550
              Q+++L L ++D D F GKD +G+  + L  V  +G+                     
Sbjct: 59  FSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVV 118

Query: 551 SGKLFLNLKW 560
           SG++ L   W
Sbjct: 119 SGEIHLQFSW 128

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 6/92 (6%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNR---AKTRVAHDTLNPVWNQTFDFV 500
           G L++ ++ A+NL K+D+ G +DP+V + L + G R    KT +   TLNP +N++F F 
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 501 V--EDGQHEMLILDVYDHDTFGK-DKMGKCIM 529
           V  E  Q   LI+ V D+D  GK D +GK ++
Sbjct: 75  VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 68.1 bits (167), Expect = 6e-14
 Identities = 35/95 (36%), Positives = 60/95 (63%), Gaps = 5/95 (5%)

Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN-RAKTRVAHDTLNPVWNQTFDFVVED 503
           V++I ++  +NLP +D  G +DP+V  +L   GN + K++V   TLNP W + FD  + D
Sbjct: 1   VVTIVLVEGKNLPPMDDNGLSDPYVKFRL---GNEKYKSKVCSKTLNPQWLEQFDLHLFD 57

Query: 504 GQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMME 537
            Q ++L ++V+D DT  KD+ +G+C + L+ +  E
Sbjct: 58  DQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPRE 92

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 10/113 (8%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNR-AKTRVAHDTLNPVWNQTFDFVV 501
            G+L + V+   NL   D    +DP+VVL L   GN+  KTRV    LNPVWN+     V
Sbjct: 1   LGLLKVRVVRGTNLAVRDFTS-SDPYVVLTL---GNQKVKTRVIKKNLNPVWNEELTLSV 56

Query: 502 EDGQHEMLILDVYDHDTFGKD-KMGKCIMTLTRVMMEGEIQDSFHIDGTKSGK 553
            +     L L+V+D DTF KD  MG+  + L  ++   E     H+  T  G 
Sbjct: 57  PN-PMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLV---EAAKLDHLRDTPGGT 105

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 71.7 bits (176), Expect = 6e-13
 Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 9/170 (5%)

Query: 395  GTESSLKNPFNSDYSLTTL-EKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAA 453
             T   + N +    SL       +  + S                 V   G L+I + + 
Sbjct: 994  PTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPV----KLPPVEMVENSGYLTIMLRSG 1049

Query: 454  ENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDV 513
            ENLP  D  G +DPFV L L +     KT+V   TLNPVWN+ F   V +   ++L ++V
Sbjct: 1050 ENLPSSDENGYSDPFVKLFLNEKSVY-KTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINV 1108

Query: 514  YDHDTFGKDK-MGKCIMTLTRVMMEGEIQDSFHIDGTKSGKL--FLNLKW 560
             D D+  K+  +G   + L+++   G    +  +DG     L   L+  +
Sbjct: 1109 NDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGF 1158

Length = 1227

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 8/108 (7%)

Query: 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRM-KTSKTINNELNPIWNEHFEFTVE 323
            LD+ L + + L  +D  G SDP+V         +    SKTI   LNP+W+E F   +E
Sbjct: 1   QLDIHLKEGRNLAARDRGGTSDPYVKF---KYGGKTVYKSKTIYKNLNPVWDEKFTLPIE 57

Query: 324 DASTQHLTVRVFD-DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370
           D  TQ L ++VFD D G  L  + +G A + L  LE  K  +V LKL 
Sbjct: 58  DV-TQPLYIKVFDYDRG--LTDDFMGSAFVDLSTLELNKPTEVKLKLE 102

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL----KKAGNRAKTRVAHDTLNPVWNQTFDFV- 500
           L  T+I A+ L  +D  G +DP+V L L     KA  + +T+  H T NP +N+T  +  
Sbjct: 17  LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKA-TKLRTKTVHKTRNPEFNETLTYYG 75

Query: 501 --VEDGQHEMLILDVYDHDTFGKDKMG 525
              ED Q + L L V D D FG D +G
Sbjct: 76  ITEEDIQRKTLRLLVLDEDRFGNDFLG 102

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 11/98 (11%)

Query: 449 TVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDF----VVEDG 504
            V++ +NLP   L GK D    +  +  G + KTRV  + LNPVWN+TF++      +  
Sbjct: 1   LVVSLKNLPG--LKGKGDRIAKVTFR--GVKKKTRVLENELNPVWNETFEWPLAGSPDPD 56

Query: 505 QHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQ 541
             E L + V D++  G+++ +G   ++L  ++ EG ++
Sbjct: 57  --ESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLE 92

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 12/129 (9%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
           GTL V +++A+ L NK  + K DP+ V  +R      KT        +P W+E   F + 
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCV--LRIGGVTKKTKTDFRGGQHPEWDEELRFEIT 58

Query: 324 DASTQHLTVRVFDDEGPMLAPEIIGIAQIALKE-LEPGKVKDVWLKLVKDVKVQRDTKNR 382
           +     L V VFDD+     P++IG  ++ L   L+ G+  D W +L          +  
Sbjct: 59  EDKKPILKVAVFDDDKR--KPDLIGDTEVDLSPALKEGEFDD-WYEL------TLKGRYA 109

Query: 383 GQVHLELLY 391
           G+V+LEL +
Sbjct: 110 GEVYLELTF 118

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 62.7 bits (153), Expect = 6e-12
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 5/91 (5%)

Query: 441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTF 497
           +    L++ V  A+NL  +D  G +DP+V L+L    K   + KT+    TLNPVWN+TF
Sbjct: 10  VKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETF 69

Query: 498 DFVVEDGQHE-MLILDVYDHDTFGK-DKMGK 526
            F ++    +  L ++V+D D   + D MG 
Sbjct: 70  TFDLKPADKDRRLSIEVWDWDRTTRNDFMGS 100

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 62.9 bits (153), Expect = 6e-12
 Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 6/90 (6%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNR---AKTRVAHDTLNPVWNQT--FD 498
           G L++T+I A NL  +D+ G +DP+V + L   G R    KT V  +TLNP +N+   FD
Sbjct: 14  GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73

Query: 499 FVVEDGQHEMLILDVYDHDTFGKDK-MGKC 527
              E+  +  LI+ V D+D  G ++ +G C
Sbjct: 74  VPPENVDNVSLIIAVVDYDRVGHNELIGVC 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 63.5 bits (155), Expect = 7e-12
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 14/114 (12%)

Query: 416 SLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFV---VLQ 472
           +LK     +E A   K  +         G L + V  A+NLP +   G +D FV   +L 
Sbjct: 7   ALKYVPPESEGALKSKKPS--------TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLP 58

Query: 473 LKKAGNRAKTRVAHDTLNPVWNQTF---DFVVEDGQHEMLILDVYDHDTFGKDK 523
            K   ++ KT V   ++NPVWN TF       ED     L L V+DHD    + 
Sbjct: 59  DKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSND 112

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 61.9 bits (151), Expect = 8e-12
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 7/111 (6%)

Query: 444 GVLSITVIAAENLPKVDL-IGKADPFVVLQLKKAGN-RAKTRVAHDTLNPVWNQT-FDFV 500
           GVL +T+  A +LPK D   G +DP+V     K G     TR+    LNPVW +T F  V
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60

Query: 501 VEDGQ--HEMLILDVYDHDTF-GKDKMGKCIMTLTRVMMEGEIQDSFHIDG 548
             D     E L   ++D D F   D++G+  + L   ++E         DG
Sbjct: 61  TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKE-LIEDRNWMGRREDG 110

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 61.8 bits (151), Expect = 9e-12
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDF-VVE 502
           GVL + +  A +L  ++ +GK DP+V + +     + +T    +TLNPVW++     V  
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGI-VKGRTVTISNTLNPVWDEVLYVPVTS 59

Query: 503 DGQHEMLILDVYDHDTFGKDK 523
             Q   + L+V D++  GKD+
Sbjct: 60  PNQK--ITLEVMDYEKVGKDR 78

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 1/110 (0%)

Query: 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEF 320
           K  G L+VKL+QA+ L  +D  G +DP+  + + P R   K SK     LNP ++E F F
Sbjct: 13  KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVF 72

Query: 321 TVEDASTQHLTVRV-FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
            V        T+ V   D       E IG+ ++ L E++  +  D+W K+
Sbjct: 73  EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 445 VLSITVIAAENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQTFDF---V 500
            L++ ++ A  LP  D  G +DPFV +  L    ++ +T+V    LNP WN+TF F    
Sbjct: 17  TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFP 76

Query: 501 VEDGQHEMLILDVYDHDTFGKD 522
            E  Q  +L L V D+D F ++
Sbjct: 77  YEKLQQRVLYLQVLDYDRFSRN 98

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
           GTL+V L+ AK L + D +GK DP+V+I  R    + K +K      NP WNE F+FTVE
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGR--NPEWNEKFKFTVE 58

Query: 324 DAS---TQHLTVRVFDDEGPMLAPEIIGIAQIALKEL 357
                    L +R+ D +      + IG A I LK L
Sbjct: 59  YPGWGGDTKLILRIMDKDN-FSDDDFIGEATIHLKGL 94

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEF 320
               TL +K+++A EL  KD  G SDPFV I++ P +     +K     LNP WNE F F
Sbjct: 13  FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 72

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDT-LNPVWNQTFDFVVE 502
           G L + +I+A+ L   D +GK DP+V++Q +      K++VA     NP WN+ F F VE
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR--TQERKSKVAKGDGRNPEWNEKFKFTVE 58

Query: 503 DGQHEM---LILDVYDHDTF-GKDKMGKCIMTLTRVMMEG 538
                    LIL + D D F   D +G+  + L  +  EG
Sbjct: 59  YPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEG 98

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG- 504
           L + V+ A++L   D  G +  +V L     G + +TR     LNPVWN+   F V D  
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVELDFD--GQKKRTRTKPKDLNPVWNEKLVFNVSDPS 59

Query: 505 --QHEMLILDVYDHDTFGKDK--MGKCIMTLTRVMMEGE 539
              + +L + VY+    G+ +  +G+  ++ T  +   E
Sbjct: 60  RLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSE 98

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 60.3 bits (147), Expect = 4e-11
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQL----KKAGNRA-KTRVAHDTLNPVWNQTFDF 499
            L + ++ A NL  +D  G +DPFV ++L            KT+V   TL P+++++F+F
Sbjct: 17  SLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEF 76

Query: 500 VVEDGQHE----MLILDVYDHDTFGKDKM-GKCIMTLTRVM 535
            V   Q      +L+  V D+D  G +   G+  + L  + 
Sbjct: 77  NVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP 117

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 60.2 bits (147), Expect = 4e-11
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 446 LSITVIAAENLPKVDLI--GKADPFVVLQLKKAG----NRAKTRVAHD-TLNPVWNQTFD 498
           L+I +I+ + LPK         DP+V +++         + KT+V  +   NPVWN+TF+
Sbjct: 4   LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63

Query: 499 FVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEG 538
           F V   +   L   VYD D+   D +G+  + L   + +G
Sbjct: 64  FDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDS-LRQG 102

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 32/130 (24%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--------------------------DR 299
           L V +++AK L  KD+ G SDP+ ++ + P                              
Sbjct: 30  LKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKS 89

Query: 300 MKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEP 359
           +K ++     LNP+WNE F F VED S   L + ++D +   L     G   I LK+L  
Sbjct: 90  IKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHDDDFL-----GCVNIPLKDLPS 144

Query: 360 GKVKDVWLKL 369
             + D W KL
Sbjct: 145 CGL-DSWFKL 153

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRP--LRDRMKTSKTINNELNPIWNEHFEF-- 320
            L   +++AK L   D  G SDP+V + + P   +     +KT++   NP +NE   +  
Sbjct: 16  ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYG 75

Query: 321 -TVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKD 364
            T ED   + L + V D++      + +G  +I LK+L+P + K 
Sbjct: 76  ITEEDIQRKTLRLLVLDED--RFGNDFLGETRIPLKKLKPNQTKQ 118

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 10/104 (9%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL----KKAGNRAKTRVAHDTLNPVWNQTFDFVV 501
           L++ +I A +LP +D+ G +DP+V + L    KK   + +T+V   TLNPV+N+TF F V
Sbjct: 18  LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFTFKV 74

Query: 502 --EDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQD 542
              +  ++ L+  VYD D F K D +G+  + L  V +    ++
Sbjct: 75  PYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEE 118

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 60.1 bits (146), Expect = 6e-11
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 6/90 (6%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNR---AKTRVAHDTLNPVWNQTF--DFV 500
           L++ V+ A +LPK+D+ G ADP+V + L     R    KT V   TLNPV+N++F  D  
Sbjct: 17  LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76

Query: 501 VEDGQHEMLILDVYDHDTFGKDK-MGKCIM 529
            E+ +   +   V D D   K++ +G+ ++
Sbjct: 77  SEELEDISVEFLVLDSDRVTKNEVIGRLVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 58.9 bits (143), Expect = 7e-11
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 7/102 (6%)

Query: 446 LSITVIAAENLPKVD-LIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWN-QTFDFVVED 503
           L + V+AA +LP +D      D FV ++        KT V   +LNPVWN + F F V+D
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKF--GSTTYKTDVVKKSLNPVWNSEWFRFEVDD 58

Query: 504 G--QHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQD 542
              Q E L + V DHDT+   D +GK  + L  ++++  +  
Sbjct: 59  EELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQ 100

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 59.2 bits (144), Expect = 9e-11
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHD--TLNPVWNQTFDFVVED 503
           L IT+I+AE+L  V+L GK   + V+ +    ++  T V  D  T NP WN+T  F +++
Sbjct: 2   LEITIISAEDLKNVNLFGKMKVYAVVWI-DPSHKQSTPVDRDGGT-NPTWNETLRFPLDE 59

Query: 504 ----GQHEMLILDVYDHDTFGKDK 523
                    L ++VY       DK
Sbjct: 60  RLLQQGRLALTIEVYCERPSLGDK 83

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 2/104 (1%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA 325
           L V++++A  +T  DL+   D +V +++    D  K +KTI N +NP+WNE FEF ++  
Sbjct: 2   LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ 61

Query: 326 STQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
               L + V D++   +  + +G     + +L+ G+   V   L
Sbjct: 62  VKNVLELTVMDED--YVMDDHLGTVLFDVSKLKLGEKVRVTFSL 103

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA--KTRVAHDTLNPVWNQTFDFVVED 503
           L I +    NL   D  G +DP+V     K G +   K++  +  LNPVW++ F   +ED
Sbjct: 2   LDIHLKEGRNLAARDRGGTSDPYVKF---KYGGKTVYKSKTIYKNLNPVWDEKFTLPIED 58

Query: 504 GQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMME 537
              + L + V+D+D    D  MG   + L+ + + 
Sbjct: 59  VT-QPLYIKVFDYDRGLTDDFMGSAFVDLSTLELN 92

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFV---VLQLKKAGNRAKTRVAHDTLNPVWNQTFDF 499
           R  L +TV    NLP  D     DP+V   +L  K    R KT V  D LNPV+++TF+F
Sbjct: 15  RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEF 74

Query: 500 VV--EDGQHEMLILDVYDHDTF---GKDKMGK 526
            V  E+ +   L + V +  +F    K  +G+
Sbjct: 75  PVSLEELKRRTLDVAVKNSKSFLSREKKLLGQ 106

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGN--RAKTRVAHDTLNPVWNQTFDF 499
           R  L + +I   NL  +D  G +DPFV L LK  AG   + KT+V   TLNP +N+ F +
Sbjct: 12  RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFY 71

Query: 500 VV--EDGQHEMLILDVYDHDTFGK 521
            +   D   + L + V+D D  GK
Sbjct: 72  DIKHSDLAKKTLEITVWDKD-IGK 94

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQL--KKAGNRAKTRVAHDTLNPVWNQTFD 498
           +VR    + V+ A NL   D  GK+DP++ ++L  KK  +R       +TLNPV+ + F+
Sbjct: 1   LVR----VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP--NTLNPVFGKMFE 54

Query: 499 FVVEDGQHEMLILDVYDHDTFGKDKM 524
                  + +L + V D+D  G D +
Sbjct: 55  LEATLPGNSILKISVMDYDLLGSDDL 80

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 62.9 bits (153), Expect = 3e-10
 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 8/127 (6%)

Query: 444 GVLSITVIAAENLPKVDLI--GKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVV 501
           GV+ + + +AE L K D    G  DP++ +         KTRV  +TLNPVWN+TF +++
Sbjct: 436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRV-IGKTRVKKNTLNPVWNETF-YIL 493

Query: 502 EDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQDS---FHIDGTKSGKLFLN 557
            +   + L L +YD ++F  DK +G   + L  +      ++    F  +    G+L  +
Sbjct: 494 LNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYD 553

Query: 558 LKWTPQL 564
           L++ P +
Sbjct: 554 LRFFPVI 560

Length = 1227

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 30/122 (24%)

Query: 445 VLSITVIAAENLPKVDLIGKADPFVVL-------------QLKKAGNRAK---------- 481
           VL +TVI A+ L   D+ G +DP+ +L               K+  +R K          
Sbjct: 29  VLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAK 88

Query: 482 ----TRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMME 537
               T V   TLNPVWN+TF F VED  ++ L LD++DHD    D +G   + L  +   
Sbjct: 89  SIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC 145

Query: 538 GE 539
           G 
Sbjct: 146 GL 147

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 441 IVRGVLSITVIAAENLPKVDLIGKADPFV---VLQLKKAGNRAKTRVAHDTLNPVWNQTF 497
            V   L +TV+ A +LP  D     +P+V   +L  +   ++ +T+    TLNP WNQTF
Sbjct: 13  KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTF 72

Query: 498 DFVV---EDGQHEMLILDVYDHDTFGKDK-MGKCIMTL 531
           ++     E  +   L + V+D+D  G++  +G+ ++ L
Sbjct: 73  EYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDL 110

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 56.8 bits (138), Expect = 4e-10
 Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 11/101 (10%)

Query: 451 IAAENLPKVDLIGKADPFVVLQLKKAGNRA----KTRVAHDTLNPVWNQTFDFVVED--- 503
            + + L K D  GK+DPF+ +  +          +T V  +TLNPVW   F   ++    
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCN 65

Query: 504 GQHEM-LILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQD 542
           G ++  + ++VYD+D+ GK   +G+   TL   +++    +
Sbjct: 66  GDYDRPIKIEVYDYDSSGKHDLIGEFETTL-DELLKSSPLE 105

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ 505
           + +TV+ A+ L K DL    DPF V+ +   G    T VA  TL+P WN+ FD  V  G 
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVD-GGQTHSTDVAKKTLDPKWNEHFDLTV--GP 58

Query: 506 HEMLILDVYDHDTFGK 521
             ++ + V+D   F K
Sbjct: 59  SSIITIQVFDQKKFKK 74

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 56.4 bits (137), Expect = 5e-10
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 8/108 (7%)

Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA-KTRVAHDTLNPVWNQTFDFVVED 503
           +L + + +A+NLP      +  P+V L +   G    K++V   T NPVW + F F+V +
Sbjct: 1   LLFVYLDSAKNLPLAKSTKEPSPYVELTV---GKTTQKSKVKERTNNPVWEEGFTFLVRN 57

Query: 504 GQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMM-EGEIQDS-FHIDGT 549
            +++ L ++V D  T     +G   + L+ ++       D  F +D +
Sbjct: 58  PENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 7/120 (5%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDT-LNPVWNQTFDF-VV 501
           G L + V+ A NLP    + K DP+ VL++   G   KT+       +P W++   F + 
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRI--GGVTKKTKTDFRGGQHPEWDEELRFEIT 58

Query: 502 EDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQD--SFHIDGTKSGKLFLNLK 559
           ED +  +  + V+D D    D +G   + L+  + EGE  D     + G  +G+++L L 
Sbjct: 59  EDKKPIL-KVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT 117

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 13/120 (10%)

Query: 268 VKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAST 327
           + LV+ K L   D  G SDP+V      L +    SK  +  LNP W E F+  + D  +
Sbjct: 4   IVLVEGKNLPPMDDNGLSDPYVKF---RLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQS 60

Query: 328 QHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHL 387
           Q L + V+D +      E IG  +I L  L   +   + L+L             G + L
Sbjct: 61  QILEIEVWDKDTGK-KDEFIGRCEIDLSALPREQTHSLELEL---------EDGEGSLLL 110

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 6/76 (7%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA 325
           L V++V A++L  KD  G S  +V   +     + +T +T   +LNP+WNE   F V D 
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVE--LDFDGQKKRT-RTKPKDLNPVWNEKLVFNVSDP 58

Query: 326 S---TQHLTVRVFDDE 338
           S      L V V++D 
Sbjct: 59  SRLSNLVLEVYVYNDR 74

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 12/108 (11%)

Query: 444 GVLSITVIAAENLPKVDLIGKA----DPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDF 499
           GV+ + + +  +LP +  + +     DPFV++   +     +T     TLNPV+N+   F
Sbjct: 1   GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR--RVFRTSWRRHTLNPVFNERLAF 58

Query: 500 VVEDGQHEM---LILDVYDHDTF-GKDKMGKCIMTLTRVMMEGEIQDS 543
            V    HE    +   V D D F   D +    +++  ++      D 
Sbjct: 59  EV--YPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAPQPDP 104

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 20/127 (15%)

Query: 268 VKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAST 327
           +++V+A+ L      G SDP+V +     + R+  ++TI + LNP W+E FE  V     
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 328 QHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKD------VWLKLVKDVKVQRDTKN 381
             ++  V+D    +   ++ G A +   +L+P +  D      +WL L        DT+ 
Sbjct: 65  LWISATVWDR-SFVGKHDLCGRASL---KLDPKRFGDDGLPREIWLDL--------DTQ- 111

Query: 382 RGQVHLE 388
            G++ L 
Sbjct: 112 -GRLLLR 117

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 20/129 (15%)

Query: 271 VQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVE---DAST 327
           V  K L    L GK D    +  R      K ++ + NELNP+WNE FE+ +    D   
Sbjct: 3   VSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDE 57

Query: 328 QHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNR---GQ 384
             L + V D E  +    +IG A ++L++L    + +V   L+       D+  R     
Sbjct: 58  S-LEIVVKDYE-KVGRNRLIGSATVSLQDLVSEGLLEVTEPLL-------DSNGRPTGAT 108

Query: 385 VHLELLYCP 393
           + LE+ Y P
Sbjct: 109 ISLEVSYQP 117

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNE--LNPIWNEHFEFTV 322
           TL++ ++ A++L N +L GK   + V+++ P     K S  ++ +   NP WNE   F +
Sbjct: 1   TLEITIISAEDLKNVNLFGKMKVYAVVWIDPS---HKQSTPVDRDGGTNPTWNETLRFPL 57

Query: 323 EDASTQH----LTVRVFDDEGPMLAPEIIGIAQIALKEL 357
           ++   Q     LT+ V+  E P L  ++IG  ++ LK+L
Sbjct: 58  DERLLQQGRLALTIEVY-CERPSLGDKLIGEVRVPLKDL 95

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA---KTRVAHDTLNPVWNQTFDFV 500
             +++ +I A NL  +D+ G +DP+V + L     R    KT +   TLNPV+N++F F 
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 501 VE-DGQHEM-LILDVYDHDTFGK-DKMGKCIM 529
           +  +   E  LI+ V D D   + D +GK  +
Sbjct: 75  IPLERLRETTLIITVMDKDRLSRNDLIGKIYL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 26/121 (21%)

Query: 451 IAAENLPKVDLIGKADPFVVLQLKKAGNR-----AKTRVAHDTLNPVWNQTF--DFVVED 503
           I+  NL   D++ K+DPFVV+ +K  G+       +T V  + LNP +  TF  D+  E+
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66

Query: 504 GQHEMLILDVYDHDTFGK-----DKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNL 558
            Q   L  +VYD D+  K     D +G+   TL      GEI        +   KL L L
Sbjct: 67  VQK--LRFEVYDVDSKSKDLSDHDFLGEAECTL------GEIV------SSPGQKLTLPL 112

Query: 559 K 559
           K
Sbjct: 113 K 113

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA 325
           + + +V A+ L  KD  G SDP+V + V   + R   +KTI   LNP+WNE F F   + 
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKR---TKTIPQNLNPVWNEKFHFECHN- 58

Query: 326 STQHLTVRVFDDE 338
           S+  + VRV+D++
Sbjct: 59  SSDRIKVRVWDED 71

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTI--NNELNPIWNEHFEFT 321
           G L V +++AK L   D+ G SDP+V I +     R+K  KT      LNP +NE F F 
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 322 VEDASTQ--HLTVRVFD 336
           V     Q  HL V V D
Sbjct: 75  VPFEQIQKVHLIVTVLD 91

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFT 321
             L V +++A+ L   D  G SDP+V + +     ++K  KT      LNP++NE F F 
Sbjct: 14  ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73

Query: 322 VEDASTQHLTVRV 334
           V     + +++ +
Sbjct: 74  VPAEQLEEVSLVI 86

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 54.1 bits (131), Expect = 6e-09
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 283 GKSDPFVVIFVR--PLRDR--MKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDE 338
              DP+V + +   P  D    KT    NN  NP+WNE FEF V       L   V+D++
Sbjct: 23  SIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82

Query: 339 GPMLAPEIIGIAQIALKELEPG 360
                 + +G A + L  L  G
Sbjct: 83  --SGDDDFLGQACLPLDSLRQG 102

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 7/112 (6%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
             L V ++QA +L   D+ G SDP+V +++ P + +   +K     LNP++NE F F V 
Sbjct: 16  NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVP 75

Query: 324 DA----STQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK 371
            +     T   +V  FD        ++IG  ++ L  ++ G V + W  L  
Sbjct: 76  YSELGNKTLVFSVYDFDR---FSKHDLIGEVRVPLLTVDLGHVTEEWRDLES 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG 504
           V  + V +AE L K D  G ADP+V+  +K  G   ++ V  DTL+P ++    F  +  
Sbjct: 4   VTQVHVHSAEGLSKQDSGGGADPYVI--IKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP 61

Query: 505 QHEMLILDVYDHDTFGKDKMGKCIMT 530
           +  + I  V++ +    + +G+  ++
Sbjct: 62  RSPIKI-QVWNSNLLCDEFLGQATLS 86

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 433 ATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPV 492
           A  +++  I R  L + ++   +L   +  GK+DP+   ++       KT+V  DTLNP 
Sbjct: 6   ARSQRASGIGR--LMVVIVEGRDLKPCNSNGKSDPYC--EVSMGSQEHKTKVVSDTLNPK 61

Query: 493 WNQTFDFVVEDGQHEMLILDVYDHDTFGKD 522
           WN +  F V+D + ++L + V+D D F  D
Sbjct: 62  WNSSMQFFVKDLEQDVLCITVFDRDFFSPD 91

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN-----RAKTRVAHDTLNPVWNQTFDF 499
           +L + V+A  +L K D+ G +DP+V + L            +T+    TLNP WN+ F F
Sbjct: 1   ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Query: 500 VVEDGQHEMLILDVYDHDTFGKD 522
            V   +H +L   V+D +   +D
Sbjct: 61  RVNPREHRLLFE-VFDENRLTRD 82

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVI-FVRPLRDRMKTS---KTINNELNPIWNEHFEFT 321
           L VK++   +L  KD+ G SDP+V I    P  +    S   KTI   LNP WNE F F 
Sbjct: 2   LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61

Query: 322 VEDASTQHLTVRVFDD 337
           V +     L   VFD+
Sbjct: 62  V-NPREHRLLFEVFDE 76

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDFV 500
           G L++ +I A+ L + D+   +DPFV +QL    K     KT     T++P +N++F F 
Sbjct: 14  GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK 73

Query: 501 V--EDGQHEMLILDVYDHDTFGKDK-MGKCIM 529
           V  E+ ++  L+  VY H+    +  +G+ ++
Sbjct: 74  VPQEELENVSLVFTVYGHNVKSSNDFIGRIVI 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 9/145 (6%)

Query: 260  LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFE 319
            ++  G L + L   + L + D  G SDPFV +F+      +  +K +   LNP+WNE F 
Sbjct: 1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLN--EKSVYKTKVVKKTLNPVWNEEFT 1093

Query: 320  FTVEDASTQHLTVRVFD-DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRD 378
              V +     LT+ V D D G     +++G A+I L +LEPG   +  + L      +  
Sbjct: 1094 IEVLNRVKDVLTINVNDWDSGE--KNDLLGTAEIDLSKLEPGGTTNSNIPLDG----KTF 1147

Query: 379  TKNRGQVHLELLYCPFGTESSLKNP 403
                G +H    +      +  +  
Sbjct: 1148 IVLDGTLHPGFNFRSKYALNVSRKE 1172

Length = 1227

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 268 VKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAST 327
           + ++ A  L  +DL    DPF VI V     +  ++      L+P WNEHF+ TV  +S 
Sbjct: 4   LTVLCADGLAKRDLFRLPDPFAVITVDG--GQTHSTDVAKKTLDPKWNEHFDLTVGPSSI 61

Query: 328 QHLTVRVFD 336
             +T++VFD
Sbjct: 62  --ITIQVFD 68

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 265 TLDVKLVQAKELTNKDLIGK-SDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
            L V L++A+ L  +       DPFV + + P   R   SK      NP ++E F F V 
Sbjct: 15  QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVS 74

Query: 324 DASTQHLTVR--VFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK 371
               Q  T+R  V+D +       IIG     LK+L+  K   VW  L  
Sbjct: 75  FKELQRRTLRLSVYDVDR-FSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
           G L + + +A +L N + +GK DP+V + V     + +T  TI+N LNP+W+E     V 
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG-IVKGRT-VTISNTLNPVWDEVLYVPVT 58

Query: 324 DASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL 357
            +  Q +T+ V D E  +     +G  +I + +L
Sbjct: 59  -SPNQKITLEVMDYE-KVGKDRSLGSVEINVSDL 90

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 51.0 bits (122), Expect = 7e-08
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDF 499
           +SITV+ A+ L   D  G +DP+V +Q+ K   R  T+     LNPVWN+ F F
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKR--TKTIPQNLNPVWNEKFHF 54

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 50.6 bits (122), Expect = 9e-08
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 263 CGTLDVKLVQAKELTNKDLIGKS-DPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFT 321
            G L V +  A+ L   D+IG + DP+V   +   R+  +T K   +  NP+WNE     
Sbjct: 1   IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELART-KVKKDTSNPVWNETKYIL 59

Query: 322 VEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKN 381
           V ++ T+ L + V+D        ++IG A+  L  L           L K+  + R+ K 
Sbjct: 60  V-NSLTEPLNLTVYDF-NDKRKDKLIGTAEFDLSSLLQ---NPEQENLTKN--LLRNGKP 112

Query: 382 RGQVHLELLYCP 393
            G+++ +L + P
Sbjct: 113 VGELNYDLRFFP 124

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
           G L V++V+   L  +D    SDP+VV+    L ++   ++ I   LNP+WNE    +V 
Sbjct: 2   GLLKVRVVRGTNLAVRDFTS-SDPYVVL---TLGNQKVKTRVIKKNLNPVWNEELTLSVP 57

Query: 324 DASTQHLTVRVFD 336
           +     L + VFD
Sbjct: 58  NPMAP-LKLEVFD 69

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 11/117 (9%)

Query: 260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTI--NNELNPIWNEH 317
           L   G L + +++A+ L   D+ G SDP+V + +     R+K  KT    N LNP +NE 
Sbjct: 10  LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEA 69

Query: 318 FEFTVEDASTQH--LTVRVFDDE--GPMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370
             F V   +  +  L + V D +  G     E+IG+ ++       G+ ++ W +++
Sbjct: 70  LVFDVPPENVDNVSLIIAVVDYDRVGH---NELIGVCRVG--PNADGQGREHWNEML 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEH 317
           L   G L+V +++AK+L   D+   SDPFV I +      +KT KT  +   ++P +NE 
Sbjct: 10  LPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNES 69

Query: 318 FEFTV--EDASTQHLTVRVFD 336
           F F V  E+     L   V+ 
Sbjct: 70  FSFKVPQEELENVSLVFTVYG 90

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 6/93 (6%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA-KTRVAHD-TLNPVWNQTFDFVVED 503
           L +TVI A++L   D     + FV  QL   GN+  +TR +     NP WN+   FV  +
Sbjct: 2   LRVTVIEAQDLVPSDKNRVPEVFVKAQL---GNQVLRTRPSQTRNGNPSWNEELMFVAAE 58

Query: 504 GQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVM 535
              + LIL V D     KD+ +G+ ++ L  + 
Sbjct: 59  PFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIE 91

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 32/127 (25%), Positives = 67/127 (52%), Gaps = 7/127 (5%)

Query: 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED 324
            L   +++A++L  KD  G SDPFV +F      +   +  +     P WNE FEF + +
Sbjct: 1   RLRCHVLEARDLAPKDRNGTSDPFVRVF---YNGQTLETSVVKKSCYPRWNEVFEFELME 57

Query: 325 ASTQHLTVRVFDDEGPMLAP-EIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTK-NR 382
            +   L+V V+D +  +++  + +G    +++ L+  K ++ W +L+ D + + ++  N 
Sbjct: 58  GADSPLSVEVWDWD--LVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNL 115

Query: 383 GQVHLEL 389
           G + L++
Sbjct: 116 GSLRLKV 122

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDF-VV 501
              L++TV+ A  L   D     D +V  ++   G   +T V  +  NP WN TFDF  V
Sbjct: 27  LATLTVTVLRATGL-WGDYFTSTDGYV--KVFFGGQEKRTEVIWNNNNPRWNATFDFGSV 83

Query: 502 EDGQHEMLILDVYDHDTFGKDKM-GKC 527
           E      L  +V+D D    D + G C
Sbjct: 84  ELSPGGKLRFEVWDRDNGWDDDLLGTC 110

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 47.9 bits (115), Expect = 5e-07
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 15/102 (14%)

Query: 273 AKELTNKDLIGKSDPFVVIFVRPLRDRMKT----SKTINNELNPIWNEHFEFTVEDA--- 325
            K+L  KD  GKSDPF+ I  R   D        ++ I N LNP+W   F   ++     
Sbjct: 9   GKKLDKKDFFGKSDPFLEIS-RQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCNG 66

Query: 326 -STQHLTVRVFD--DEGPMLAPEIIGIAQIALKELEPGKVKD 364
              + + + V+D    G     ++IG  +  L EL      +
Sbjct: 67  DYDRPIKIEVYDYDSSGK---HDLIGEFETTLDELLKSSPLE 105

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 14/87 (16%)

Query: 453 AENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQT--FDFVVEDGQHE-- 507
           A +L   D  G +DPF  V  L ++    +T V  +TL+P W+QT  FD V   G  E  
Sbjct: 10  ARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEI 66

Query: 508 -----MLILDVYDHDTFGKDK-MGKCI 528
                +++++++D D+ GKD+ +G+ +
Sbjct: 67  AQNPPLVVVELFDQDSVGKDEFLGRSV 93

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR---DRMKTSKTINNELNPIWNEHFEFTV 322
           L V + + + L   D     DP+V +++ P +    R KTS    + LNP+++E FEF V
Sbjct: 18  LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTS-VKKDNLNPVFDETFEFPV 76

Query: 323 --EDASTQHLTVRVFDDEGPMLAP-EIIGIAQIALKELEPGK 361
             E+   + L V V + +  +    +++G   I L +L+  K
Sbjct: 77  SLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK 118

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTI--NNELNPIWNEHFEFT 321
             + V +++A+ L   D+ G SDP+V +++     R++  KT+     LNP++NE F F 
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 322 V 322
           +
Sbjct: 75  I 75

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ 505
           L   V+ A +L   D  G +DPFV +     G   +T V   +  P WN+ F+F + +G 
Sbjct: 2   LRCHVLEARDLAPKDRNGTSDPFVRVFYN--GQTLETSVVKKSCYPRWNEVFEFELMEGA 59

Query: 506 HEMLILDVYDHDTFGK-DKMGK 526
              L ++V+D D   K D +GK
Sbjct: 60  DSPLSVEVWDWDLVSKNDFLGK 81

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 10/127 (7%)

Query: 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED 324
           +L +++V+ K L  KD+ G SDP+ ++ V    + +  + T+   LNP W E  E+TV  
Sbjct: 1   SLYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGE--EYTVHL 56

Query: 325 ASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL--EPGKVKDVWLKLVKDVKVQRDTKNR 382
               H       DE  +   ++IG   +  + +   P  + D W+ L    +V  D + +
Sbjct: 57  PPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGI-DGWMNL---TEVDPDEEVQ 112

Query: 383 GQVHLEL 389
           G++HLEL
Sbjct: 113 GEIHLEL 119

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 47.2 bits (113), Expect = 9e-07
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 481 KTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEI 540
            TRV   T NP WN + +F+V D +   + + V D        +G   ++L  ++    +
Sbjct: 28  TTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV 87

Query: 541 -QDSFHIDGTKSGKLFLNLKWTP 562
            Q  F + G   G++ ++  W P
Sbjct: 88  GQQWFPLSGNGQGRIRISALWKP 110

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 22/128 (17%)

Query: 443 RGVLSITVIAAENLPKVDL-IGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFD 498
           +  L + +I   +LP +D   G +DP+V LQL   K+  ++ KTRV   T NPV+++TF 
Sbjct: 15  KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE--HKVKTRVLRKTRNPVYDETFT 72

Query: 499 FV-VEDGQHEMLILD--VYDHDTFGKDKM-GKCIMTLTRVMMEGEIQDSFHIDGTKSGKL 554
           F  +   Q + L L   V   D + +D + G+ +  L               D    G+L
Sbjct: 73  FYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAG------------ADLLNEGEL 120

Query: 555 FLNLKWTP 562
            ++ +  P
Sbjct: 121 LVSREIQP 128

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 268 VKLVQAKELTNKDLIGKSDPFVVIFVRP--LRDRMKTSKTINNELNPIWNEHFEFTVEDA 325
           V +V+A+ L  KD  GKSDP++ I +    + DR      I N LNP++ + FE      
Sbjct: 4   VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDR---DNYIPNTLNPVFGKMFELEATLP 60

Query: 326 STQHLTVRVFDDEGPMLAPEIIG 348
               L + V D    + + ++IG
Sbjct: 61  GNSILKISVMDY-DLLGSDDLIG 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 445 VLSITVIAAENLPKVDLIGK-ADPFVVLQL-KKAGNRAKTRVAHDTLNPVWNQTFDFVV- 501
            L++++I A NLP         DPFV + L        +++V   T NP +++TF F V 
Sbjct: 15  QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVS 74

Query: 502 -EDGQHEMLILDVYDHDTFGK-DKMGKCIMTL 531
            ++ Q   L L VYD D F +   +G  +  L
Sbjct: 75  FKELQRRTLRLSVYDVDRFSRHCIIGHVLFPL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 447 SITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQH 506
            + VI A  L   ++    DP V +++   G +  T V   T  P +N+ F F   +   
Sbjct: 7   RVRVIEARQLVGGNI----DPVVKVEV--GGQKKYTSVKKGTNCPFYNEYFFFNFHESPD 60

Query: 507 EM----LILDVYDHDTFGKD 522
           E+    + + VYD  +   D
Sbjct: 61  ELFDKIIKISVYDSRSLRSD 80

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINN----ELNPIWNEHFE 319
             L V +++   L   D  G SDPFV ++++P  D  K SK         LNP +NE F 
Sbjct: 13  RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKP--DAGKKSKHKTQVKKKTLNPEFNEEFF 70

Query: 320 FTV--EDASTQHLTVRVFD-DEGP 340
           + +   D + + L + V+D D G 
Sbjct: 71  YDIKHSDLAKKTLEITVWDKDIGK 94

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 10/131 (7%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA 325
           L V +++A++L   D     + FV   +     R + S+T N   NP WNE   F   + 
Sbjct: 2   LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNG--NPSWNEELMFVAAEP 59

Query: 326 STQHLTVRVFDDEGPMLAPEIIGIAQIALKELE----PGKVKDVWLKLVKDVKVQRD--- 378
              HL + V D  GP    E +G A I L ++E       V   W  L +          
Sbjct: 60  FEDHLILSVEDRVGPN-KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKK 118

Query: 379 TKNRGQVHLEL 389
            K   ++HL L
Sbjct: 119 RKFASRIHLRL 129

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 12/82 (14%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR-----MKTSKTINNELNPIWNEHFEF 320
           L V+++ A+ L   D  G SDPFV + + P R          ++     L P+++E FEF
Sbjct: 18  LRVEILNARNLLPLDSNGSSDPFVKVELLP-RHLFPDVPTPKTQVKKKTLFPLFDESFEF 76

Query: 321 TVED------ASTQHLTVRVFD 336
            V         +    TV+ +D
Sbjct: 77  NVPPEQCSVEGALLLFTVKDYD 98

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 5/78 (6%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFT 321
             L V ++QA++L  +D     +P+V +++ P R     + +KT+   LNP WN+ FE++
Sbjct: 16  SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYS 75

Query: 322 V---EDASTQHLTVRVFD 336
               E    + L V V+D
Sbjct: 76  NVRRETLKERTLEVTVWD 93

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 31/106 (29%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA 325
           L V L  AK L       +  P+V + V       + SK      NP+W E F F V + 
Sbjct: 2   LFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNP 58

Query: 326 STQHLTVRVFDDEGPMLAPEIIGIAQIALKEL--EPGKVKDVWLKL 369
             Q L + V DD+        +G   + L EL  EP    D    L
Sbjct: 59  ENQELEIEVKDDKTGKS----LGSLTLPLSELLKEPDLTLDQPFPL 100

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 443 RGVLSITVIAAENLPKVDLIGKA-DPFVVLQLK---KAGNRAKTRVAHDTLNPVWNQTF- 497
            G L + V+ A+NLP +D  G   DP+V   L    +   + KT+V   T NP +N+   
Sbjct: 12  NGTLFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLV 69

Query: 498 --DFVVEDGQHEMLILDVYDHDTFG-KDKMGKCIMTLTRVMMEGEIQDSFH 545
                VED Q  +L + V+ HD+    + +G   + L ++ +  E +  + 
Sbjct: 70  YDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYP 120

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 44.9 bits (107), Expect = 9e-06
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 12/86 (13%)

Query: 444 GVLSITVIAAENLPKVD-LIGKADPFV---VLQLKKAGNRAKTRVAHDTLNPVWNQTFDF 499
           G L + +    NL   D    +++P+V   +L  K   ++ KT V  +T NPV+N+T  +
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY 73

Query: 500 VVEDGQHEMLI-----LDVYDHDTFG 520
            +       L      L V+ HD FG
Sbjct: 74  HIS---KSQLETRTLQLSVWHHDRFG 96

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAK-TRVAHDTLNPVWNQTFDFVVE 502
           G+L++ +I A NL   D  G ADP+  ++L    +  K +++   TLNP ++++F F V 
Sbjct: 16  GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVP 75

Query: 503 DGQHEMLILDV--YDHDTFGKD 522
             +     L+V  YD D F +D
Sbjct: 76  PQELPKRTLEVLLYDFDQFSRD 97

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 271 VQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKT--INNELNPIWNEHFEFTVEDAS 326
           +  + L +KD++ KSDPFVV++V+       ++  +T  I N LNP +   F        
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66

Query: 327 TQHLTVRVFDDEGPMLAPE---IIGIAQIALKEL 357
            Q L   V+D +           +G A+  L E+
Sbjct: 67  VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 16/130 (12%)

Query: 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNE-LNPIWNEHFEFTV- 322
           +L +++++AK L +K   G  DP+  + +    D+++ ++T   E LNP W E F F   
Sbjct: 1   SLRLRILEAKNLPSK---GTRDPYCTVSL----DQVEVARTKTVEKLNPFWGEEFVFDDP 53

Query: 323 -EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKN 381
             D +   L+    D        + I I ++AL +L+ G+ KD W  L     V  D++ 
Sbjct: 54  PPDVTFFTLSFYNKDKR--SKDRD-IVIGKVALSKLDLGQGKDEWFPL---TPVDPDSEV 107

Query: 382 RGQVHLELLY 391
           +G V L   Y
Sbjct: 108 QGSVRLRARY 117

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176068 cd08686, C2_ABR, C2 domain in the Active BCR (Breakpoint cluster region) Related protein

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 465 ADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVE-DGQHEMLILDVYDHDTFG 520
           A+ +  L++   G    +AKTRV  DT  P WN+  +F +E +G   + IL  Y+     
Sbjct: 15  ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNE--EFEIELEGSQTLRIL-CYEKCY-- 69

Query: 521 KDKMGKCIMTLTRVMMEGEIQ 541
             K+         +M +G+IQ
Sbjct: 70  -SKVKLDGEGTDAIMGKGQIQ 89

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 7/78 (8%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSK----TINNELNPIWNEHFE 319
             L V++ +AK L   D  G SDP+V + + P  D    +K    TI   LNP+WNE F 
Sbjct: 13  NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIP--DPKNETKQKTKTIKKTLNPVWNETFT 70

Query: 320 FTVEDAS-TQHLTVRVFD 336
           F ++ A   + L++ V+D
Sbjct: 71  FDLKPADKDRRLSIEVWD 88

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 274 KEL-TNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTV 332
           K L T++   G   P+  +++      + T++      NP WN   EF V D     +TV
Sbjct: 1   KGLDTSESKTGLLSPYAELYLN--GKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTV 58

Query: 333 RVFDDEGPMLAPEIIGIAQIALKEL 357
            V DD        ++G   I+L +L
Sbjct: 59  VVKDDR--DRHDPVLGSVSISLNDL 81

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 53/284 (18%), Positives = 95/284 (33%), Gaps = 52/284 (18%)

Query: 241 TWPVRQIIPILPGDYSDLELKPCGTLDVKLVQAKELTN-KDLIGKSDPFVVIFVRPLRDR 299
            +PV +    L G    LE    G L V L + K L             +          
Sbjct: 556 FFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYTNA----KE 611

Query: 300 MKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEP 359
           + ++  +    +P WN  +   V D     + V  FD +    + ++I      L +L  
Sbjct: 612 VYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ----SGKVIATEGSTLPDL-- 665

Query: 360 GKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKS 419
                        +    DT                    L+NP      +T   K + +
Sbjct: 666 -------------IDRTLDTFL---------------VFPLRNP-KGRIFITNYWKPIYN 696

Query: 420 ETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNR 479
                     G  +       I  G + ++V  A +L      GK+DP+  + +     +
Sbjct: 697 A--------GGSSSKTVYDTPI--GAIRVSVRKANDLRNEIPGGKSDPYATVLVNNL-VK 745

Query: 480 AKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDK 523
            +T     TLNP+WN+   +V    +++ L L+  D++  G D+
Sbjct: 746 YRTIYGSSTLNPIWNE-ILYVPVTSKNQRLTLECMDYEESGDDR 788

Length = 1227

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
           G L V +V+ ++L   +  GKSDP+  +    +  +   +K +++ LNP WN   +F V+
Sbjct: 15  GRLMVVIVEGRDLKPCNSNGKSDPYCEV---SMGSQEHKTKVVSDTLNPKWNSSMQFFVK 71

Query: 324 DASTQHLTVRVFDDEGPMLAP-EIIGIAQIALKEL 357
           D     L + VFD +    +P + +G  +I + ++
Sbjct: 72  DLEQDVLCITVFDRD--FFSPDDFLGRTEIRVADI 104

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 23/121 (19%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAH--DTLNPVWNQTFDFVVED 503
           L I ++  +NLP  D+ G +DP+ ++   K  N    R A    TLNP W + +   +  
Sbjct: 2   LYIRIVEGKNLPAKDITGSSDPYCIV---KVDNEVIIRTATVWKTLNPFWGEEYTVHLPP 58

Query: 504 GQHEMLILDVYDHDTFGKDK-MGKCIMT----------------LTRVMMEGEIQDSFHI 546
           G H +    V D DT  +D  +GK  +T                LT V  + E+Q   H+
Sbjct: 59  GFHTVSFY-VLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHL 117

Query: 547 D 547
           +
Sbjct: 118 E 118

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFT 321
             L V +++A+ L   D+ G +DP+V + +   + R+   KT      LNP++NE F F 
Sbjct: 15  NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD 74

Query: 322 VEDASTQHLTV 332
           +     + ++V
Sbjct: 75  IPSEELEDISV 85

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 12/104 (11%)

Query: 446 LSITVIAAENLPKVDLIGKADPF----VVLQLKKAGNRAKTRVAHDTLNPVWNQTFDF-- 499
           L++TVI A+++P  D  G A  +    V+L  KK   RAKT+V     NPV+N+TF F  
Sbjct: 18  LTVTVIRAQDIPTKDR-GGASSWQVHLVLLPSKK--QRAKTKVQRGP-NPVFNETFTFSR 73

Query: 500 VVEDGQHEM-LILDVYDHDTFGKDKM-GKCIMTLTRVMMEGEIQ 541
           V  +  + M L   +Y  +   K+++ G+ ++ L+++ +EGE  
Sbjct: 74  VEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETT 117

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGN-RAKTRVAHDTLNPVWNQTFDFVVEDG 504
           L + V+ A  LP        DP V +   K GN +  T+    T NP WNQ F F  +  
Sbjct: 2   LYVRVVKARGLP----ANSNDPVVEV---KLGNYKGSTKAIERTSNPEWNQVFAFSKDRL 54

Query: 505 QHEMLILDVYDHDTFGKDKMGKC 527
           Q   L + V+D D    D +G  
Sbjct: 55  QGSTLEVSVWDKDKAKDDFLGGV 77

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 264 GTLDVKLVQAKELTNKDL-IGKSDPFVVI----FVRPLRDRMKTSKTINNELNPIWNE-H 317
           G L V + +A +L   D   G SDP+V      F +PL     +++ I  +LNP+W E  
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLY----STRIIRKDLNPVWEETW 56

Query: 318 FEFTVEDASTQH--LTVRVFDDEGPMLAPEIIGIAQIALKEL 357
           F     D       L+ R++ D     A + +G  +I LKEL
Sbjct: 57  FVLVTPDEVKAGERLSCRLW-DSDRFTADDRLGRVEIDLKEL 97

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVR-PLRDRMKTSKTINNELNPIWNEHFEFTVED 324
           L V++++ ++L  K   G  DPF  + +    +   K +K      NP ++E F F +  
Sbjct: 1   LSVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59

Query: 325 ASTQHLTVRVFDDEGP 340
             +        ++E  
Sbjct: 60  GFSYEKKSFKVEEEDL 75

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 63/151 (41%)

Query: 264 GTLDVKLVQAKELTNKDL------------------------------IGKSDPFVVIFV 293
           GTLDV + +A  L N D+                                 SDP+  + +
Sbjct: 7   GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL 66

Query: 294 ---RPLRDRMKTSKTINNELNPIWNEHF-----------EFTVEDASTQHLTVRVFDDEG 339
              R  R R+     I N  NP+WNE F           EFTV+D               
Sbjct: 67  AGARVARTRV-----IENSENPVWNESFHIYCAHYASHVEFTVKDND------------- 108

Query: 340 PMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370
            ++  ++IG A I +++L  G+  + WL ++
Sbjct: 109 -VVGAQLIGRAYIPVEDLLSGEPVEGWLPIL 138

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 23/121 (19%)

Query: 272 QAKELTNKDLIGKSDPFV-VIFVRPLRDRMKTSKTINNELNPIWNEHFEFT-VE-DASTQ 328
           QA++L   D  G SDPF  V F     ++ + ++ I   L+P W++   F  VE   S +
Sbjct: 9   QARDLLAADKSGLSDPFARVSF----LNQSQETEVIKETLSPTWDQTLIFDEVELYGSPE 64

Query: 329 HLT-------VRVFDDEGPMLAPEIIG------IAQIALKELEPGKVKDVWLKLVKDVKV 375
            +        V +FD +  +   E +G      + ++ L+E  P K++  W  + K  + 
Sbjct: 65  EIAQNPPLVVVELFDQD-SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQ--WFPIYKGGQS 121

Query: 376 Q 376
            
Sbjct: 122 A 122

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 13/109 (11%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFTVE 323
           L + +  AK L +     K DP+V + V    D     KT       NP WNEH  FTV 
Sbjct: 4   LQITVESAK-LKSNSKSFKPDPYVEVTV----DGQPPKKTEVSKKTSNPKWNEH--FTVL 56

Query: 324 DASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL---EPGKVKDVWLKL 369
                 L  +V+     + A  ++G A + L ++     GK+++V L L
Sbjct: 57  VTPQSTLEFKVWSHH-TLKADVLLGEASLDLSDILKNHNGKLENVKLTL 104

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 23/121 (19%)

Query: 264 GTLDVKLVQAKEL-------------TNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNEL 310
           GTL +K+ +A +L                 L+   DP+V I V        ++K   N  
Sbjct: 4   GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLL---DPYVSIDVDDTHIGKTSTKPKTN-- 58

Query: 311 NPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL--EPGKVKDVWLK 368
           +P+WNE F   V +   ++L + VF D   +   + +    I+ ++L        D+W+ 
Sbjct: 59  SPVWNEEFTTEVHNG--RNLELTVFHDA-AIGPDDFVANCTISFEDLIQRGSGSFDLWVD 115

Query: 369 L 369
           L
Sbjct: 116 L 116

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ 505
           L +  I A  L +    G ++P+ VL++ +   + ++    +T NP W++ F F +    
Sbjct: 1   LLVKNIKANGLSEA--AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNS 58

Query: 506 HEMLILDVYDHDTFGKDK 523
            E+L  +VYD+      K
Sbjct: 59  KELLF-EVYDNGKKSDSK 75

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 12/83 (14%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVL----QLKKAGNRAKTRVAHDTLNPVWNQTFDFVV 501
           L ITV +A  L       K DP+V +    Q  K     KT V+  T NP WN+ F  +V
Sbjct: 4   LQITVESA-KLKSNSKSFKPDPYVEVTVDGQPPK-----KTEVSKKTSNPKWNEHFTVLV 57

Query: 502 EDGQHEMLILDVYDHDTFGKDKM 524
                  L   V+ H T   D +
Sbjct: 58  T--PQSTLEFKVWSHHTLKADVL 78

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 446 LSITVIAAENLPKVDL-IGKADPFV---VLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVV 501
           L + VI  ++L   D    ++DP+V   +L  K    + KT V   TLNPV+N+T  + V
Sbjct: 17  LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKV 76

Query: 502 E--DGQHEMLILDVYDHDTFGKD 522
           E  +    +L L V+  D+ G++
Sbjct: 77  EREELPTRVLNLSVWHRDSLGRN 99

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 250 ILPGDYSDLELKPC--GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT-- 305
           + P     L+ K    G L V + +AK L      G SD FV  ++ P + +    KT  
Sbjct: 11  VPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPV 70

Query: 306 INNELNPIWNEHFEF---TVEDASTQHLTVRVFD 336
           +   +NP+WN  F +   + ED S   L + V+D
Sbjct: 71  VKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 11/124 (8%)

Query: 268 VKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED--- 324
           V ++QA+ L  K   G +D +V+I +   +++  TS       +P+W E   F +     
Sbjct: 3   VTVLQARGLLCKGKSGTNDAYVIIQLG--KEKYSTS-VKEKTTSPVWKEECSFELPGLLS 59

Query: 325 -ASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEP--GKVKDVWLKLVKDVKVQRDTKN 381
               +            +   + +G   I L +L+   G+ +  W KL  + K  +D K 
Sbjct: 60  GNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKL--ESKPGKDDKE 117

Query: 382 RGQV 385
           RG++
Sbjct: 118 RGEI 121

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 30/139 (21%), Positives = 65/139 (46%), Gaps = 12/139 (8%)

Query: 261 KPCGTLDVKLVQAKELTNKDL-----IGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWN 315
           +P  T DV      E  +K++     +  SDP+V + V   +  +  ++ + N   P+W+
Sbjct: 48  RPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP--QATLARTRVLKNSQEPLWD 105

Query: 316 EHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKV 375
           E F  ++      +L  +V DD+  +   +IIG A+I ++++  G+    W  ++     
Sbjct: 106 EKFNISIAHPFA-YLEFQVKDDD--VFGAQIIGTAKIPVRDIASGERISGWFPVLG--AS 160

Query: 376 QRDTKNRGQVHLELLYCPF 394
            +  K    + +++ + PF
Sbjct: 161 GKPPKAETAIFIDMKFTPF 179

Length = 868

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 10/114 (8%)

Query: 444  GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVE- 502
            G L++T+    NL +   +G  + F  L L     R +T+V   + +P W + F +  + 
Sbjct: 1980 GSLTVTIKRGNNLKQS--MGNTNAFCKLTLGNGPPR-QTKVVSHSSSPEWKEGFTWAFDS 2036

Query: 503  --DGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHI--DGTKSG 552
               GQ   L +     +TFGK  +GK  + + RV+MEG     + +  +  K G
Sbjct: 2037 PPKGQK--LHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDG 2088

Length = 2102

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 276 LTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVF 335
           L  KD  G +D + V    P   R +T   + +  NP WNE + + V D  T  LTV VF
Sbjct: 15  LRAKDGRGSTDAYCVAKYGPKWVRTRT---VEDSSNPRWNEQYTWPVYDPCTV-LTVGVF 70

Query: 336 D-----DEGPMLAPEIIGIAQIALKELEPGKV 362
           D      +  +    +IG  +I L  LE  +V
Sbjct: 71  DNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRV 102

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 303 SKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALK--ELEPG 360
           +KT+   L P + E F F +   + +HL+  ++D +  +L  + + I ++A+K  +L   
Sbjct: 38  TKTVEKSLCPFFGEDFYFEIP-RTFRHLSFYIYDRD--VLRRDSV-IGKVAIKKEDLHKY 93

Query: 361 KVKDVWLKLVKDVKVQRDTKNRGQVHLEL 389
             KD W  L     V  D++ +G+VHLEL
Sbjct: 94  YGKDTWFPL---QPVDADSEVQGKVHLEL 119

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	570
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	100.0
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.97
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.9
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.89
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.87
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.85
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.84
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.84
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.84
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.83
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.83
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.83
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.82
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.82
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.82
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.82
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.82
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.82
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.81
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.81
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.81
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.81
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.81
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.81
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.8
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.8
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.8
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.8
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.8
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.8
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.8
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.8
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.8
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.8
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.8
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.8
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.8
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.8
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.79
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.79
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.79
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.79
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.78
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.78
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.78
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.78
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.78
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.78
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.78
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.77
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.77
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.77
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.77
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.77
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.77
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.76
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.76
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.76
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.76
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.76
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.76
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.76
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.76
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.76
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.76
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.76
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.75
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.75
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.75
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.75
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.75
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.75
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.75
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.75
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.75
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.75
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.75
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.75
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.75
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.75
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.74
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.74
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.74
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.74
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.73
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.73
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.73
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.73
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.73
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.73
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.72
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.72
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.72
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.72
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.72
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.72
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.72
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.71
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.71
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.71
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.71
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.71
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.71
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.71
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.71
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.71
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.71
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.7
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.7
PLN03008	868	Phospholipase D delta	99.7
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.7
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.69
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.69
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.69
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.69
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.69
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.69
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.69
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.69
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.69
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.69
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.68
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.68
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.68
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.68
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.68
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.68
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.68
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.67
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.67
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.67
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.66
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.66
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.66
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.66
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.66
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.66
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.66
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.65
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.65
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.65
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.65
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.64
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.64
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.64
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.64
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.64
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.64
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.64
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.64
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.63
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.63
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.63
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.63
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.63
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.63
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.63
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.63
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.63
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.63
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.62
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.62
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.62
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.62
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.62
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.62
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.61
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.61
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.61
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.61
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.61
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.61
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.61
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.61
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.61
PLN03008	868	Phospholipase D delta	99.61
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.6
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.6
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.6
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.59
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.59
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.59
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.59
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.59
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.58
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.57
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.57
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.56
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.56
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.54
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.53
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.5
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.5
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.47
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.4
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.38
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.37
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.34
PLN02270	808	phospholipase D alpha	99.32
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.3
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.29
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.28
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.27
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.25
PLN02270	808	phospholipase D alpha	99.23
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.2
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.19
PLN02223	537	phosphoinositide phospholipase C	99.18
PF10296	91	DUF2404: Putative integral membrane protein conser	99.17
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.17
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.16
PLN02952	599	phosphoinositide phospholipase C	99.08
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.08
PLN02223	537	phosphoinositide phospholipase C	99.07
PLN02230	598	phosphoinositide phospholipase C 4	98.97
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.96
PLN02952	599	phosphoinositide phospholipase C	98.93
PLN02228	567	Phosphoinositide phospholipase C	98.93
PLN02222	581	phosphoinositide phospholipase C 2	98.92
PLN02228	567	Phosphoinositide phospholipase C	98.92
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.92
PLN02230	598	phosphoinositide phospholipase C 4	98.89
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.87
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.87
PLN02222	581	phosphoinositide phospholipase C 2	98.84
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.79
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.79
PLN02352	758	phospholipase D epsilon	98.76
PLN02352	758	phospholipase D epsilon	98.75
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.73
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.7
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.65
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.65
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.64
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.4
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.21
KOG3532	1051	consensus Predicted protein kinase [General functi	98.09
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.97
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.97
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.9
PLN02964	644	phosphatidylserine decarboxylase	97.89
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.83
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.67
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.66
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.6
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.57
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.41
PLN02964	644	phosphatidylserine decarboxylase	97.3
PF15627	156	CEP76-C2: CEP76 C2 domain	97.19
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.15
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	96.6
PF15627	156	CEP76-C2: CEP76 C2 domain	96.5
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.71
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	95.52
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.47
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.39
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	95.29
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.1
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.04
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	94.89
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	94.11
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	94.06
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	93.94
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	93.86
KOG1452	442	consensus Predicted Rho GTPase-activating protein	93.64
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	93.61
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	93.49
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	93.39
KOG1452	442	consensus Predicted Rho GTPase-activating protein	93.24
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	93.15
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	92.97
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	92.58
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	92.2
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	91.17
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	90.69
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	89.64
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	89.01
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	88.99
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	88.6
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	88.02
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	85.69
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	84.91
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	84.71
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	84.36
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	84.28
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	83.74
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	83.43
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	82.97

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=100.00  E-value=9.4e-59  Score=497.64  Aligned_cols=451  Identities=24%  Similarity=0.430  Sum_probs=381.6

Q ss_pred             CCccchHHHHHHHHhHhHhHHHHHHHHHHHhHHHHHhhcCCCCcceEEEeEEecCCCCCeEeEEEEEeccCCCceeEEEE
Q 008305           66 QQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMEL  145 (570)
Q Consensus        66 ~~~E~~eWlN~~l~~~Wp~~~~~~~~~~~~~~~~~l~~~~p~~l~~i~~~~~~lG~~pP~i~~i~~~~~~~~~~~~~~d~  145 (570)
                      -|+|++||||.+|+++||.+++.+++.+.+++|+.|+++.|+||+++.+.+||||++||||.+||.|+.+ +.|.+.||+
T Consensus       218 nd~ESveWLNtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~t-e~dtv~mD~  296 (1227)
T COG5038         218 NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPST-ESDTVVMDV  296 (1227)
T ss_pred             cchhHHHHHHHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCC-CCceEEEEe
Confidence            4789999999999999999999999999999999999999999999999999999999999999999997 889999999


Q ss_pred             EEEEcC---------------CCcEEEEEee--eee-eeeeEEEEEEEEEEEEEEEeeeCCCCCCcccEEEEEeccCcce
Q 008305          146 EMQWDG---------------NPNIVLDIRT--RVG-VGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDL  207 (570)
Q Consensus       146 ~~~~~~---------------~~~i~l~~~~--~~g-~~~~v~v~~~~~~g~lrv~l~pl~~~~P~~~~~~~~f~~~P~i  207 (570)
                      ++++.-               ++.|.|.++.  .+| +++||.|+++.|.|++|++++ |++.+|++..++++|++.|.+
T Consensus       297 ~~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~  375 (1227)
T COG5038         297 DFSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEF  375 (1227)
T ss_pred             eeccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcce
Confidence            999963               3456777753  345 789999999999999999999 999999999999999999999


Q ss_pred             eEEEEEec-----cccccCcchHHHHHHHHHHHHHhhccccceeeEecC---CCCCCCcccCCceEEEEEEEEecCCCCC
Q 008305          208 DFTLKVVG-----GDISSIPGISDAIEETIIDAIEDSITWPVRQIIPIL---PGDYSDLELKPCGTLDVKLVQAKELTNK  279 (570)
Q Consensus       208 d~~l~~~g-----~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~~~~~---~~~~~~~~~~~~G~L~V~V~~A~~L~~~  279 (570)
                      ||.++++|     .||++||||+.|++++|...++.|+++|+.+++++.   .++    ...+.|+|.|+|.+|++|...
T Consensus       376 df~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~----s~~aIGVv~vkI~sa~~lk~~  451 (1227)
T COG5038         376 DFILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGD----SGTAIGVVEVKIKSAEGLKKS  451 (1227)
T ss_pred             eEEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccc----cCCeeEEEEEEEeeccCcccc
Confidence            99999986     589999999999999999999999999999999874   332    346899999999999999998


Q ss_pred             C--CCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEcccc
Q 008305          280 D--LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL  357 (570)
Q Consensus       280 ~--~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l  357 (570)
                      +  ..+..|||+.+...  +....+|++++++.||+|||+|++.+... ++.|.++|||.+.. ..|+.+|++.++|..|
T Consensus       452 d~~i~~~vDpyit~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~-~sd~vvG~~~l~L~~L  527 (1227)
T COG5038         452 DSTINGTVDPYITVTFS--DRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSF-KSDKVVGSTQLDLALL  527 (1227)
T ss_pred             cccccCCCCceEEEEec--cccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecccc-CCcceeeeEEechHHh
Confidence            8  56899999999976  34456999999999999999999998854 57999999998888 8999999999999999


Q ss_pred             CCCeee-EEEEEeeccccccCCCcceeEEEEEEEEEeccCCCCCCCCCCCCccchhhhhhhcccCchhhhhhcccccccc
Q 008305          358 EPGKVK-DVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSETSRAEAAELGKIATQK  436 (570)
Q Consensus       358 ~~~~~~-~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (570)
                      ...... +.-+.+      ....+..|+|+..+.|+|............             +                 
T Consensus       528 ~~~~~~~ne~~e~------~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~-------------e-----------------  571 (1227)
T COG5038         528 HQNPVKKNELYEF------LRNTKNVGRLTYDLRFFPVIEDKKELKGSV-------------E-----------------  571 (1227)
T ss_pred             hhccccccceeee------eccCccceEEEEeeeeecccCCcccccccc-------------C-----------------
Confidence            765433 223443      346789999999999999755432211100             0                 


Q ss_pred             CCCcccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEEC
Q 008305          437 KSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDH  516 (570)
Q Consensus       437 ~~~~~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~  516 (570)
                      ..+....|++.+++.++++|..... .....+++++++. +....|+.++.+.+|.||+.+...+.+.....+.+.++|.
T Consensus       572 ~~ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~-keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~  649 (1227)
T COG5038         572 PLEDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNA-KEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDV  649 (1227)
T ss_pred             CcccCCcceeEEEeeccccccCccc-cccceeEEEEecc-eEEeccceeeeccCCceeeecceEeccCcceeEEEEeccc
Confidence            0011346999999999999976432 1223348888874 5677889999999999999999999988889999999998


Q ss_pred             CCCCCceeEEEEEeccccccCc-eEEEEEEecCCCCeEEEEEEEEEecCCCC
Q 008305          517 DTFGKDKMGKCIMTLTRVMMEG-EIQDSFHIDGTKSGKLFLNLKWTPQLVLR  567 (570)
Q Consensus       517 ~~~~~d~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~G~i~l~~~~~p~~~~~  567 (570)
                      .  ..+.+|+...+|.++.... ....||++. .++|+|.+..-|+|.+.-.
T Consensus       650 ~--~g~~i~~~~~~l~~li~~t~dt~~~f~~~-~~kg~I~~t~~W~Pi~~~~  698 (1227)
T COG5038         650 Q--SGKVIATEGSTLPDLIDRTLDTFLVFPLR-NPKGRIFITNYWKPIYNAG  698 (1227)
T ss_pred             c--cCceeccccccchHhhhccccceEEEEcC-CCcceEEEEeccceeeccc
Confidence            6  3578888888888887554 457899999 6679999999999998744

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.8e-30  Score=264.31  Aligned_cols=224  Identities=33%  Similarity=0.506  Sum_probs=193.7

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEEe
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVFD  336 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~d  336 (570)
                      |......|.|+|++|++|+..+..|.+||||++++.|....+.+|++.++++||.|||+|.|.+..  ...+.|.+.|||
T Consensus       162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~  241 (421)
T KOG1028|consen  162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD  241 (421)
T ss_pred             ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence            445678899999999999999966889999999999888788999999999999999999999642  456789999999


Q ss_pred             CCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEeccCCCCCCCCCCCCccchhhhhh
Q 008305          337 DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKS  416 (570)
Q Consensus       337 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~  416 (570)
                      +|++ +++++||++.++|..+........|.++......  .....|+|.++++|.|.                      
T Consensus       242 ~drf-sr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~--~~~~~gel~~sL~Y~p~----------------------  296 (421)
T KOG1028|consen  242 FDRF-SRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTD--SEELAGELLLSLCYLPT----------------------  296 (421)
T ss_pred             cCCc-ccccEEEEEEecCccccccccceeeeccccccCC--cccccceEEEEEEeecC----------------------
Confidence            9999 9999999999999999877667889999765432  22223899999999852                      


Q ss_pred             hcccCchhhhhhccccccccCCCcccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCee
Q 008305          417 LKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVW  493 (570)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w  493 (570)
                                                .|.|+|.|.+|+||...+..+.+||||++++..+.   .++||.+++++.||+|
T Consensus       297 --------------------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~  350 (421)
T KOG1028|consen  297 --------------------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVF  350 (421)
T ss_pred             --------------------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcc
Confidence                                      59999999999999999999999999999985432   4689999999999999


Q ss_pred             eeEEEEEee--cCCCcEEEEEEEECCCCCC-ceeEEEEEeccc
Q 008305          494 NQTFDFVVE--DGQHEMLILDVYDHDTFGK-DKMGKCIMTLTR  533 (570)
Q Consensus       494 ~e~f~f~v~--~~~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~  533 (570)
                      ||+|.|.+.  ...+..|.|+|||++..+. ++||++.+....
T Consensus       351 nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  351 NETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             cccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence            999999886  3345679999999999977 699999998875

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.90  E-value=3.2e-23  Score=213.24  Aligned_cols=250  Identities=23%  Similarity=0.340  Sum_probs=200.0

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCC
Q 008305          264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLA  343 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~  343 (570)
                      ..|.|+|.+|+||++.+..|.+||||.+.++  .....||.++.+++.|-|.|+|+|.+... -+.|.|.|||.| . ++
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD--~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~-~~   79 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD--QEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-L-KR   79 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeec--chhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-c-cc
Confidence            3689999999999999999999999999998  45689999999999999999999998743 468999999999 6 89


Q ss_pred             CceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEeccCCCCCCCCCCCCccchhhhhhhcccCch
Q 008305          344 PEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSETSR  423 (570)
Q Consensus       344 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (570)
                      |+.||.+.|.=++|......+.|+.|.+-   +.+....|+|++++.+.+...                           
T Consensus        80 D~~IGKvai~re~l~~~~~~d~W~~L~~V---D~dsEVQG~v~l~l~~~e~~~---------------------------  129 (800)
T KOG2059|consen   80 DDIIGKVAIKREDLHMYPGKDTWFSLQPV---DPDSEVQGKVHLELALTEAIQ---------------------------  129 (800)
T ss_pred             ccccceeeeeHHHHhhCCCCccceecccc---CCChhhceeEEEEEEeccccC---------------------------
Confidence            99999999999999877778999999642   446678999999999864211                           


Q ss_pred             hhhhhccccccccCCCcccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--ceEeCcccCCCCCCeeeeEEEEEe
Q 008305          424 AEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG--NRAKTRVAHDTLNPVWNQTFDFVV  501 (570)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~--~~~kT~v~~~t~nP~w~e~f~f~v  501 (570)
                                         ..-+...+.+++++.+.. ++.+|||+++...++.  ...+|.++++|.+|.|+|.|.|.+
T Consensus       130 -------------------~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~  189 (800)
T KOG2059|consen  130 -------------------SSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEV  189 (800)
T ss_pred             -------------------CCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeee
Confidence                               112233344444554444 3559999999986432  246899999999999999999988


Q ss_pred             ecC---------------CCcEEEEEEEEC-CCCC-CceeEEEEEeccccccCceEEEEEEecC----------CCCeEE
Q 008305          502 EDG---------------QHEMLILDVYDH-DTFG-KDKMGKCIMTLTRVMMEGEIQDSFHIDG----------TKSGKL  554 (570)
Q Consensus       502 ~~~---------------~~~~L~i~V~d~-~~~~-~d~lG~~~i~l~~l~~~~~~~~w~~L~~----------~~~G~i  554 (570)
                      ...               ..-.|.+++|++ +... ++|+|++.+++...........||-|..          ..-|.+
T Consensus       190 ~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGsl  269 (800)
T KOG2059|consen  190 TREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSL  269 (800)
T ss_pred             ccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccce
Confidence            533               233588899984 4443 4699999999999987778889999943          235889


Q ss_pred             EEEEEEEecCCCCC
Q 008305          555 FLNLKWTPQLVLRD  568 (570)
Q Consensus       555 ~l~~~~~p~~~~~~  568 (570)
                      ++.+.|....+++.
T Consensus       270 rl~v~y~~D~Vlps  283 (800)
T KOG2059|consen  270 RLNVTYTEDHVLPS  283 (800)
T ss_pred             eeeEEeeeceeccH
Confidence            99999998888764

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.89  E-value=3.1e-22  Score=171.21  Aligned_cols=119  Identities=25%  Similarity=0.449  Sum_probs=103.3

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCC-CCCCeeecEEEEEEecCCCCeEEEEEEeCCCCC
Q 008305          263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINN-ELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPM  341 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~  341 (570)
                      .|.|+|+|++|++++..+ .|++||||++.++   +++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.+ 
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg---~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~-   74 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVG---HAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAF-   74 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEEC---CEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCC-
Confidence            489999999999998777 7999999999997   56789999865 79999999999999754 46899999999999 


Q ss_pred             CCCceEEEEEEEcc-ccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          342 LAPEIIGIAQIALK-ELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       342 ~~d~~lG~~~i~l~-~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      ++|++||++.+++. .+..+...+.|++|.+..    .....|+|+++++|
T Consensus        75 ~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~----~~~~~g~i~l~l~y  121 (121)
T cd04016          75 TMDERIAWTHITIPESVFNGETLDDWYSLSGKQ----GEDKEGMINLVFSY  121 (121)
T ss_pred             cCCceEEEEEEECchhccCCCCccccEeCcCcc----CCCCceEEEEEEeC
Confidence            89999999999996 577777789999996532    34578999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.87  E-value=2.8e-20  Score=201.99  Aligned_cols=340  Identities=25%  Similarity=0.375  Sum_probs=238.6

Q ss_pred             cchHHHHHHHHHHHHHhhccccce-------eeE---ecC--CCCCCC-cccCCceEEEEEEEEecCCCCCCCCCCCCcE
Q 008305          222 PGISDAIEETIIDAIEDSITWPVR-------QII---PIL--PGDYSD-LELKPCGTLDVKLVQAKELTNKDLIGKSDPF  288 (570)
Q Consensus       222 P~l~~~i~~~i~~~i~~~~v~P~~-------~~~---~~~--~~~~~~-~~~~~~G~L~V~V~~A~~L~~~~~~g~~dpy  288 (570)
                      +....-+...|.......++.|.+       ++.   |+.  .+..+. .+..+.|.++|+|..|.+|.+....+.+|||
T Consensus       656 ~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPy  735 (1227)
T COG5038         656 ATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPY  735 (1227)
T ss_pred             ccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccc
Confidence            444455567777777777777775       222   432  121222 2457999999999999999988788999999


Q ss_pred             EEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEE-EE
Q 008305          289 VVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDV-WL  367 (570)
Q Consensus       289 v~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~-w~  367 (570)
                      +.+.+.  +..++||-....++||.|||..+..+..+ .+.+.++++|+... +.|..+|++.++++++........ ..
T Consensus       736 a~v~~n--~~~k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~s-gddr~lg~~~i~vsn~~~k~~~s~~~~  811 (1227)
T COG5038         736 ATVLVN--NLVKYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEES-GDDRNLGEVNINVSNVSKKDEDSALME  811 (1227)
T ss_pred             eEEEec--ceeEEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhc-cccceeceeeeeeeeeeecCCCcceEE
Confidence            999998  35678999899999999999999998865 46899999999998 999999999999999865211111 11


Q ss_pred             Ee-----eccccccCCCcceeEEEEEEEEEeccCCCCCC-------------------------CCCCCC--------cc
Q 008305          368 KL-----VKDVKVQRDTKNRGQVHLELLYCPFGTESSLK-------------------------NPFNSD--------YS  409 (570)
Q Consensus       368 ~L-----~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~-------------------------~~~~~~--------~~  409 (570)
                      ..     ..... ..+.+..|++.+.+.|+|.....+.+                         .++..+        ..
T Consensus       812 ~i~g~~~t~~l~-~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~  890 (1227)
T COG5038         812 TIDGAEETGKLS-LTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIE  890 (1227)
T ss_pred             eecCcccccccc-cccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhccee
Confidence            11     11111 11456789999999999864322110                         000000        00


Q ss_pred             c---h---------hhhhhhcccCch------------------------------------------------------
Q 008305          410 L---T---------TLEKSLKSETSR------------------------------------------------------  423 (570)
Q Consensus       410 ~---~---------~~~~~~~~~~~~------------------------------------------------------  423 (570)
                      .   .         ++.++++.....                                                      
T Consensus       891 v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~  970 (1227)
T COG5038         891 VEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEY  970 (1227)
T ss_pred             eccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhcc
Confidence            0   0         011111100000                                                      


Q ss_pred             --------hh-------------------hhhccc-cc---cc------------------cCCCcccceEEEEEEEEee
Q 008305          424 --------AE-------------------AAELGK-IA---TQ------------------KKSDVIVRGVLSITVIAAE  454 (570)
Q Consensus       424 --------~~-------------------~~~~~~-~~---~~------------------~~~~~~~~g~L~V~v~~a~  454 (570)
                              ..                   ...++. ..   ..                  .-.-...+|.|.|.+.+|.
T Consensus       971 s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~ 1050 (1227)
T COG5038         971 SETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGE 1050 (1227)
T ss_pred             ceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccC
Confidence                    00                   000000 00   00                  0001134889999999999


Q ss_pred             cCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ceeEEEEEeccc
Q 008305          455 NLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTR  533 (570)
Q Consensus       455 ~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~  533 (570)
                      ||+..+.+|.+||||++.+++ +..++|+++++|+||.|||.|.+++.+...+.+.+.|+|++...+ |.||.+.++|..
T Consensus      1051 nl~~~d~ng~sDpfv~~~ln~-k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~ 1129 (1227)
T COG5038        1051 NLPSSDENGYSDPFVKLFLNE-KSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSK 1129 (1227)
T ss_pred             CCcccccCCCCCceEEEEecc-eecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhh
Confidence            999999999999999999985 458999999999999999999999987788899999999998866 799999999999


Q ss_pred             cccCceEEEEEEecCCC----CeEEEEEEEEEecCCCC
Q 008305          534 VMMEGEIQDSFHIDGTK----SGKLFLNLKWTPQLVLR  567 (570)
Q Consensus       534 l~~~~~~~~w~~L~~~~----~G~i~l~~~~~p~~~~~  567 (570)
                      +..+.......+|.+..    .|.++..+.|++.....
T Consensus      1130 l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~~~~~n 1167 (1227)
T COG5038        1130 LEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRSKYALN 1167 (1227)
T ss_pred             cCcCCccceeeeccCcceEecccEeecceecchhhhhc
Confidence            99888887778887764    67888888888776654

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.85  E-value=8.5e-21  Score=165.52  Aligned_cols=119  Identities=23%  Similarity=0.473  Sum_probs=102.8

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEec-----CCCCeEEEEEEeCCCC
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED-----ASTQHLTVRVFDDEGP  340 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~-----~~~~~L~~~v~d~d~~  340 (570)
                      ++|+|++|+||+..+..|.+||||+++++   +++++|+++++++||+|||+|.|.+..     ...+.|.++|||++..
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~---~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~   77 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG---KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL   77 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEEC---CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence            57999999999999888999999999997   567899999999999999999999976     3567899999999998


Q ss_pred             CCCCceEEEEEEEccccC--CCeeeEEEEEeeccccccCCCcceeEEEEEEE
Q 008305          341 MLAPEIIGIAQIALKELE--PGKVKDVWLKLVKDVKVQRDTKNRGQVHLELL  390 (570)
Q Consensus       341 ~~~d~~lG~~~i~l~~l~--~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~  390 (570)
                       ++|++||++.++++++.  .+.....|++|.+...  +..+..|+|+++++
T Consensus        78 -~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~--~~~~~~Gei~l~~~  126 (126)
T cd08682          78 -GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG--KDDKERGEIEVDIQ  126 (126)
T ss_pred             -CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC--CCccccceEEEEeC
Confidence             88999999999999997  5666789999975321  34567899999863

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.84  E-value=2e-20  Score=161.36  Aligned_cols=117  Identities=32%  Similarity=0.528  Sum_probs=102.6

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeC-CCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCC
Q 008305          264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTIN-NELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPML  342 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~  342 (570)
                      |.|+|+|++|++|+..+..+.+||||+++++   ++.++|+++. ++.||+|||+|.|.+.....+.|.|+|||++.. +
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~   76 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-K   76 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC-C
Confidence            7899999999999999988999999999997   4667888764 579999999999999876667899999999987 5


Q ss_pred             CCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          343 APEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       343 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                       |++||++.++++++..+.....|++|..      .++..|+|+++++|
T Consensus        77 -~~~iG~~~~~l~~~~~~~~~~~w~~L~~------~~~~~G~i~l~l~f  118 (118)
T cd08681          77 -PDLIGDTEVDLSPALKEGEFDDWYELTL------KGRYAGEVYLELTF  118 (118)
T ss_pred             -CcceEEEEEecHHHhhcCCCCCcEEecc------CCcEeeEEEEEEEC
Confidence             9999999999999977666789999953      34689999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.84  E-value=4.3e-20  Score=158.01  Aligned_cols=113  Identities=23%  Similarity=0.486  Sum_probs=98.1

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCC-CCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHD-TLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-  521 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-  521 (570)
                      |.|.|+|++|++++..+ .|.+||||++.+++  .++||+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.+++ 
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~--~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~d   77 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH--AVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMD   77 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEECC--EEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCC
Confidence            78999999999998877 79999999999954  6779999876 79999999999999753 4679999999999876 


Q ss_pred             ceeEEEEEecc-ccccCceEEEEEEecC----CCCeEEEEEEEE
Q 008305          522 DKMGKCIMTLT-RVMMEGEIQDSFHIDG----TKSGKLFLNLKW  560 (570)
Q Consensus       522 d~lG~~~i~l~-~l~~~~~~~~w~~L~~----~~~G~i~l~~~~  560 (570)
                      ++||.+.+++. .+..+...+.||+|.+    ...|+|+++++|
T Consensus        78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          78 ERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             ceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            69999999996 4666666899999976    457999999986

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.84  E-value=6.8e-20  Score=158.65  Aligned_cols=120  Identities=35%  Similarity=0.561  Sum_probs=106.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE  345 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~  345 (570)
                      |+|+|++|++|+..+..|.+||||+++++  +.+.++|+++.++.||+|||+|.|.+.+. .+.|.|+|||++.. ++|+
T Consensus         2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~-~~~~   77 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRG-LTDD   77 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCC-CCCc
Confidence            78999999999999988999999999986  34578999999999999999999998765 47899999999998 8999


Q ss_pred             eEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305          346 IIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCP  393 (570)
Q Consensus       346 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  393 (570)
                      +||.+.++++++..+...+.|++|.+..    ..+..|+|++.++|.|
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~~----~~~~~G~l~l~~~~~~  121 (121)
T cd04042          78 FMGSAFVDLSTLELNKPTEVKLKLEDPN----SDEDLGYISLVVTLTP  121 (121)
T ss_pred             ceEEEEEEHHHcCCCCCeEEEEECCCCC----CccCceEEEEEEEECC
Confidence            9999999999999888889999996432    2467999999999864

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.83  E-value=9.1e-20  Score=157.04  Aligned_cols=117  Identities=28%  Similarity=0.417  Sum_probs=100.6

Q ss_pred             EEEEEEEEecC---CCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCC
Q 008305          265 TLDVKLVQAKE---LTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPM  341 (570)
Q Consensus       265 ~L~V~V~~A~~---L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~  341 (570)
                      .|.|+|++|++   |..+|..|.+||||+++++   .+..+|+++++++||+|||+|.|.+.++. ..|.|+|||++...
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g---~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~   76 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG---PKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH   76 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEEC---CEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence            38999999999   8888989999999999997   66789999999999999999999998755 48999999998851


Q ss_pred             -----CCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEE
Q 008305          342 -----LAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHL  387 (570)
Q Consensus       342 -----~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l  387 (570)
                           .+|++||++.++++++..+...+.|++|....  .+..+..|+|+.
T Consensus        77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~~~~g~l~~  125 (126)
T cd08379          77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN--PSGVKKMGELEC  125 (126)
T ss_pred             ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC--CCCccCCcEEEe
Confidence                 28999999999999999988889999997543  124567788764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.83  E-value=1.4e-19  Score=159.24  Aligned_cols=119  Identities=25%  Similarity=0.403  Sum_probs=103.7

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP  340 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~  340 (570)
                      ...|.|+|+|++|++|+..+..|.+||||+++++   .+.++|++++++.||.|||+|.|.+.+...+.|.++|||++..
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~---~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~   88 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG---SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF   88 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence            5789999999999999999988999999999986   6678999999999999999999999877778999999999988


Q ss_pred             CCCCceEEEEEEEccccCC-----CeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          341 MLAPEIIGIAQIALKELEP-----GKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       341 ~~~d~~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                       ++|++||++.+++.++..     ......|..+        ..+.+|+|++++.+
T Consensus        89 -~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~--------~~~~~g~i~l~~~~  135 (136)
T cd08375          89 -SPDDFLGRTEIRVADILKETKESKGPITKRLLL--------HEVPTGEVVVKLDL  135 (136)
T ss_pred             -CCCCeeEEEEEEHHHhccccccCCCcEEEEecc--------ccccceeEEEEEEe
Confidence             889999999999999975     2222344444        46788999999876

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.83  E-value=1.1e-19  Score=155.00  Aligned_cols=109  Identities=24%  Similarity=0.404  Sum_probs=92.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEe----CCCceEEeeeeCCCCCCeeecEEEEEEec---CCCCeEEEEEEeC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRP----LRDRMKTSKTINNELNPIWNEHFEFTVED---ASTQHLTVRVFDD  337 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~----~~~~~~~T~~~~~t~nP~Wne~f~f~v~~---~~~~~L~~~v~d~  337 (570)
                      .|+|+|++|++|+..+ .|.+||||++++..    ...++++|+++.+++||+|||+|.|.+..   .....|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            3899999999999887 49999999999842    22346789999999999999999999974   3345799999999


Q ss_pred             CCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccc
Q 008305          338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKV  375 (570)
Q Consensus       338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~  375 (570)
                      +.. +.|++||++.+++.++..+.....|++|.+..++
T Consensus        80 d~~-~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~~  116 (120)
T cd08395          80 CFA-RDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHM  116 (120)
T ss_pred             ccc-CCCCEEEEEEEEHHHCcCCCcEEEEEECcCcccc
Confidence            977 7899999999999999988889999999765543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=1.3e-19  Score=161.81  Aligned_cols=125  Identities=26%  Similarity=0.405  Sum_probs=106.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCC-CCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINN-ELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLA  343 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~  343 (570)
                      .|+|+|++|++|+..+..|.+||||+++++   ++..+|+++.+ ++||+|||+|.|.+.++..+.+.|+|+|++.. ++
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~-~~   76 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGP-NK   76 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCC-CC
Confidence            379999999999999989999999999997   57788998866 69999999999999876667999999999987 78


Q ss_pred             CceEEEEEEEccccCCC----eeeEEEEEeeccccc---cCCCcceeEEEEEEEEEe
Q 008305          344 PEIIGIAQIALKELEPG----KVKDVWLKLVKDVKV---QRDTKNRGQVHLELLYCP  393 (570)
Q Consensus       344 d~~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~~---~~~~~~~G~l~l~l~~~p  393 (570)
                      |++||++.++|+++..+    ...+.|++|.+..+.   .+..+.+|+|++.++|.+
T Consensus        77 dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~  133 (150)
T cd04019          77 DEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG  133 (150)
T ss_pred             CCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence            99999999999999643    446899999865321   134577899999999963

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.82  E-value=2.4e-19  Score=154.14  Aligned_cols=115  Identities=30%  Similarity=0.440  Sum_probs=103.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP  344 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d  344 (570)
                      +++|+|++|++|+..+..+.+||||+++++   ++.++|++++++.||.|||+|.|.+.+...+.|.++|||++.. ++|
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~-~~~   76 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG---NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTG-KKD   76 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEEC---CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCC-CCC
Confidence            478999999999999988999999999996   5678999999999999999999999876678999999999998 899


Q ss_pred             ceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          345 EIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       345 ~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                      ++||++.++++++..+...+.|++|.+         ..|+|++.+.|.
T Consensus        77 ~~iG~~~~~l~~l~~~~~~~~w~~L~~---------~~G~~~~~~~~~  115 (116)
T cd08376          77 EFIGRCEIDLSALPREQTHSLELELED---------GEGSLLLLLTLT  115 (116)
T ss_pred             CeEEEEEEeHHHCCCCCceEEEEEccC---------CCcEEEEEEEec
Confidence            999999999999998888999999942         259999998873

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.82  E-value=2.2e-19  Score=154.95  Aligned_cols=116  Identities=28%  Similarity=0.538  Sum_probs=102.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE  345 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~  345 (570)
                      |.|+|++|++|+..+..+.+||||++++.+.+...++|++++++.||+|||+|.|.+.....+.|.|+|||++..  +|+
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~--~~~   79 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV--MDD   79 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--CCc
Confidence            789999999999998888999999999975445678999999999999999999999766567899999999986  789


Q ss_pred             eEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          346 IIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       346 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      +||++.++++++..+.....|++|.        .+..|++++++.+
T Consensus        80 ~iG~~~~~l~~l~~g~~~~~~~~L~--------~~~~g~l~~~~~~  117 (119)
T cd04036          80 HLGTVLFDVSKLKLGEKVRVTFSLN--------PQGKEELEVEFLL  117 (119)
T ss_pred             ccEEEEEEHHHCCCCCcEEEEEECC--------CCCCceEEEEEEe
Confidence            9999999999999988899999993        2458888888765

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.82  E-value=2e-19  Score=157.53  Aligned_cols=123  Identities=33%  Similarity=0.532  Sum_probs=106.2

Q ss_pred             eEEEEEEEEecCCCCCCC--CCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCC
Q 008305          264 GTLDVKLVQAKELTNKDL--IGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPM  341 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~--~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~  341 (570)
                      |+|+|+|++|++|+..+.  .+.+||||+++++   .+.++|++++++.||.|||+|.|.+.+...+.|.|+|||++.. 
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~-   76 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG---AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRF-   76 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC---CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCC-
Confidence            789999999999999887  7899999999986   5678999999999999999999999876678999999999988 


Q ss_pred             CCCceEEEEEEEccccCC---CeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          342 LAPEIIGIAQIALKELEP---GKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       342 ~~d~~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      +.+++||++.++++++..   ......|++|.+... .+.....|+|++++.|
T Consensus        77 ~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~-~~~~~~~G~i~l~~~~  128 (128)
T cd04024          77 AGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP-GKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCCCcceEEEEEHHHhhcccccCccceeEEccCccc-CccccccceEEEEEEC
Confidence            889999999999999973   344679999975422 2345689999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=2e-19  Score=157.04  Aligned_cols=120  Identities=28%  Similarity=0.413  Sum_probs=103.1

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCC---CCeEEEEEEeCCCCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAS---TQHLTVRVFDDEGPM  341 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~---~~~L~~~v~d~d~~~  341 (570)
                      .|+|+|++|++|+..+..|.+||||+++++   ++.++|+++.++.||+|||+|.|.+.++.   ...|.|+|||++.. 
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~-   76 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS-   76 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC-
Confidence            379999999999999888999999999997   56789999999999999999999987543   35799999999987 


Q ss_pred             C-CCceEEEEEEEccccC-CCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          342 L-APEIIGIAQIALKELE-PGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       342 ~-~d~~lG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      + .|++||++.++++++. .+.....|++|.+..   ..++.+|+|++++.+
T Consensus        77 ~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~  125 (127)
T cd04022          77 GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG---LFSRVRGEIGLKVYI  125 (127)
T ss_pred             cCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC---CCCCccEEEEEEEEE
Confidence            6 7999999999999997 566678999997532   234579999999887

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.82  E-value=1.7e-19  Score=155.54  Aligned_cols=115  Identities=27%  Similarity=0.554  Sum_probs=101.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCC-CCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCc
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHD-TLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKD  522 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d  522 (570)
                      |.|+|+|++|+||+..+..+.+||||++++++  .+++|+++.+ +.||.|||.|.|.+.....+.|.|+|||++..+++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~   78 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG--VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPD   78 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECC--CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCc
Confidence            67999999999999999889999999999964  6678888754 78999999999999876678899999999887767


Q ss_pred             eeEEEEEeccccccCceEEEEEEecCC--CCeEEEEEEEE
Q 008305          523 KMGKCIMTLTRVMMEGEIQDSFHIDGT--KSGKLFLNLKW  560 (570)
Q Consensus       523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~--~~G~i~l~~~~  560 (570)
                      +||++.++++++..+....+||+|...  ..|+|+++++|
T Consensus        79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          79 LIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             ceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence            999999999999877677899999754  57999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.81  E-value=3.3e-19  Score=154.56  Aligned_cols=115  Identities=34%  Similarity=0.637  Sum_probs=103.6

Q ss_pred             eEEEEEEEEeecCCCCCC------CCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECC
Q 008305          444 GVLSITVIAAENLPKVDL------IGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHD  517 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~------~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~  517 (570)
                      |.|+|+|++|+||+..+.      .|.+||||++++++  ..++|++++++.||.|||.|.|.+.+.....|.|+|||++
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~--~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~   78 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDED   78 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC--EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecC
Confidence            679999999999998774      36899999999964  7889999999999999999999997666789999999998


Q ss_pred             CCCCceeEEEEEeccccccCceEEEEEEecCCCCeEEEEEEEE
Q 008305          518 TFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKW  560 (570)
Q Consensus       518 ~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~  560 (570)
                      ..++++||++.++++++..++...+||+|.+..+|+|+++++|
T Consensus        79 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          79 PDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             CCCCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence            8855799999999999988777899999999889999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.81  E-value=4.7e-19  Score=152.89  Aligned_cols=115  Identities=25%  Similarity=0.525  Sum_probs=103.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCcee
Q 008305          446 LSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKM  524 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~l  524 (570)
                      |+|+|++|++|+..+..+.+||||++++.+ ...++||++++++.||.|||+|.|.+.......|.|+|||++..++++|
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i   81 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL   81 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence            789999999999988888999999999853 2467899999999999999999999976656789999999998855799


Q ss_pred             EEEEEeccccccCceEEEEEEecCCCCeEEEEEEEE
Q 008305          525 GKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKW  560 (570)
Q Consensus       525 G~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~  560 (570)
                      |++.++++++..+.....||+|..++.|++++++.+
T Consensus        82 G~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~  117 (119)
T cd04036          82 GTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL  117 (119)
T ss_pred             EEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence            999999999988888899999999889999998875

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.81  E-value=1.8e-19  Score=151.52  Aligned_cols=107  Identities=14%  Similarity=0.183  Sum_probs=90.8

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeC-CCceEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPL-RDRMKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVF  335 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~-~~~~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~  335 (570)
                      |....|.|.|+|++|++|+ .  .|.+||||++++.+. +..+++|+++++|+||+|||+|.|.+..  .....|.|.||
T Consensus         9 Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~   85 (118)
T cd08677           9 YDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR   85 (118)
T ss_pred             EcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence            4567899999999999998 2  467999999999853 3357899999999999999999999854  34567999999


Q ss_pred             eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305          336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL  369 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  369 (570)
                      |+|++ +++++||++.++++++..+...+.|..|
T Consensus        86 d~Drf-s~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          86 CCDRF-SRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             eCCCC-CCCceEEEEEEccccccCCccccchhcC
Confidence            99999 9999999999999988666566778653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.81  E-value=6.4e-19  Score=151.99  Aligned_cols=119  Identities=26%  Similarity=0.428  Sum_probs=101.5

Q ss_pred             EEEEEEEecCCCCCC-CCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305          266 LDVKLVQAKELTNKD-LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP  344 (570)
Q Consensus       266 L~V~V~~A~~L~~~~-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d  344 (570)
                      |.|+|++|+||+..+ ..|.+||||.++++  +...++|+++++|+||.|||+|.|.+.+. ...|.|.|||++.. ++|
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~-~~~   77 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVL-RRD   77 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCC-CCC
Confidence            689999999999874 45789999999996  33468999999999999999999999754 46899999999998 899


Q ss_pred             ceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          345 EIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       345 ~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      ++||.+.++++++..+...+.|++|.+..   ..++..|+|++++++
T Consensus        78 ~~iG~~~i~l~~l~~~~~~~~w~~L~~~~---~~~~~~G~i~l~~~~  121 (121)
T cd08401          78 SVIGKVAIKKEDLHKYYGKDTWFPLQPVD---ADSEVQGKVHLELRL  121 (121)
T ss_pred             ceEEEEEEEHHHccCCCCcEeeEEEEccC---CCCcccEEEEEEEEC
Confidence            99999999999998877789999997542   234568999998764

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.81  E-value=8.6e-19  Score=154.18  Aligned_cols=118  Identities=26%  Similarity=0.555  Sum_probs=106.0

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCC
Q 008305          441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFG  520 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~  520 (570)
                      ...|.|+|+|++|++|+..+..|.+||||++.++  ...++|++++++.||.|||.|.|.+.+...+.|.|+|||++..+
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~--~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~   89 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG--SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFS   89 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC--CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCC
Confidence            4469999999999999999988999999999994  46789999999999999999999998777789999999999876


Q ss_pred             C-ceeEEEEEecccccc-----CceEEEEEEecCCCCeEEEEEEEE
Q 008305          521 K-DKMGKCIMTLTRVMM-----EGEIQDSFHIDGTKSGKLFLNLKW  560 (570)
Q Consensus       521 ~-d~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~i~l~~~~  560 (570)
                      + ++||++.+++.++..     ...+.+|..+.+...|+|++++.+
T Consensus        90 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          90 PDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            5 699999999999986     345678899999999999999986

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.81  E-value=3.6e-19  Score=155.25  Aligned_cols=112  Identities=22%  Similarity=0.423  Sum_probs=97.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeec-----CCCcEEEEEEEECCCCC
Q 008305          446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVED-----GQHEMLILDVYDHDTFG  520 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~-----~~~~~L~i~V~d~~~~~  520 (570)
                      ++|+|++|+||+..+..|.+||||++.++  ..++||++++++.||+|||.|.|.+.+     .....|.|+|||++..+
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~--~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~   78 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG--KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG   78 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEEC--CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC
Confidence            47999999999999888999999999995  467899999999999999999999976     35678999999999886


Q ss_pred             C-ceeEEEEEeccccc--cCceEEEEEEecCC------CCeEEEEEEE
Q 008305          521 K-DKMGKCIMTLTRVM--MEGEIQDSFHIDGT------KSGKLFLNLK  559 (570)
Q Consensus       521 ~-d~lG~~~i~l~~l~--~~~~~~~w~~L~~~------~~G~i~l~~~  559 (570)
                      + ++||++.++++++.  .+....+||+|.+.      ..|+|+++++
T Consensus        79 ~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          79 LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            5 79999999999987  44567899999742      3699999874

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.80  E-value=9.3e-19  Score=152.31  Aligned_cols=122  Identities=20%  Similarity=0.366  Sum_probs=102.4

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCC
Q 008305          263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPML  342 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~  342 (570)
                      ...|+|+|++|+||+..   +.+||||+++++  +.+..+|+++ ++.||.|||+|.|.+.....+.+.|.|||++.. +
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~-~   75 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLN--EVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKR-S   75 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEEC--CEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCC-C
Confidence            45799999999999875   478999999996  2345688874 689999999999987655546899999999998 8


Q ss_pred             CCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305          343 APEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCP  393 (570)
Q Consensus       343 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  393 (570)
                      +|++||++.+++.++..+...+.|++|.+..  ....+..|+|+++++|.+
T Consensus        76 ~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~--~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          76 KDSEIAEVTVQLSKLQNGQETDEWYPLSSAS--PLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             CCCeEEEEEEEHhHccCCCcccEeEEcccCC--CCCCCcCcEEEEEEEEEc
Confidence            9999999999999999888889999997642  124567899999999974

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.80  E-value=6.6e-19  Score=152.14  Aligned_cols=103  Identities=27%  Similarity=0.458  Sum_probs=90.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEe-e--cCCCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVV-E--DGQHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v-~--~~~~~~L~i~V~d~  516 (570)
                      .+.|.|.|++|+||+..+ .+.+||||++++...   ..++||++++++.||.|||+|.|.+ .  +.....|.|+|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            378999999999999999 899999999999632   3578999999999999999999987 2  33567899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305          517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHI  546 (570)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L  546 (570)
                      +..++ ++||++.++|+++........||+|
T Consensus        91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            98865 7999999999999887778899987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.80  E-value=1.1e-18  Score=152.03  Aligned_cols=122  Identities=25%  Similarity=0.419  Sum_probs=104.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE  345 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~  345 (570)
                      |.|+|++|++|+.  ..|.+||||+++++. ..+.++|+++.++.||+|||.|.|.+.. ..+.|.|+|||++.. ++|+
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~-~~~~   75 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE-PPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKK-SDSK   75 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECC-CCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCC-CCCc
Confidence            5799999999987  578999999999962 2456899999999999999999999863 457899999999998 8899


Q ss_pred             eEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305          346 IIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPF  394 (570)
Q Consensus       346 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  394 (570)
                      +||++.++++++..+.....|++|.+...  ...+..|+|++++.|.+.
T Consensus        76 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~~~~G~l~l~~~~~~~  122 (126)
T cd08678          76 FLGLAIVPFDELRKNPSGRQIFPLQGRPY--EGDSVSGSITVEFLFMEP  122 (126)
T ss_pred             eEEEEEEeHHHhccCCceeEEEEecCCCC--CCCCcceEEEEEEEEecc
Confidence            99999999999998877889999975421  245679999999999753

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.80  E-value=7.8e-19  Score=151.25  Aligned_cols=109  Identities=24%  Similarity=0.398  Sum_probs=95.5

Q ss_pred             EEEEEEEEeec---CCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCC--
Q 008305          445 VLSITVIAAEN---LPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTF--  519 (570)
Q Consensus       445 ~L~V~v~~a~~---L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~--  519 (570)
                      .|+|+|++|+|   |+..+..|.+||||++.++  .++.||++++++.||+|||+|.|.+.++ ...|.|+|||++..  
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g--~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~   77 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG--PKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHW   77 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEEC--CEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCccc
Confidence            48999999999   8888989999999999995  4688999999999999999999999764 45899999999886  


Q ss_pred             -----CCceeEEEEEeccccccCceEEEEEEecC------CCCeEEEE
Q 008305          520 -----GKDKMGKCIMTLTRVMMEGEIQDSFHIDG------TKSGKLFL  556 (570)
Q Consensus       520 -----~~d~lG~~~i~l~~l~~~~~~~~w~~L~~------~~~G~i~l  556 (570)
                           ++++||++.++++++..+....+||+|..      .+.|+|++
T Consensus        78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence                 55799999999999998888899999973      24677764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.80  E-value=1.7e-19  Score=156.96  Aligned_cols=96  Identities=33%  Similarity=0.595  Sum_probs=89.6

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP  340 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~  340 (570)
                      .+.|.|+|+|++|.+|..+|..+++||||++.++   +++.+|+++++++||+|||.|.|.+.++. ..|++.|||+|.+
T Consensus         3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg---~q~lkT~~v~~n~NPeWNe~ltf~v~d~~-~~lkv~VyD~D~f   78 (168)
T KOG1030|consen    3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG---NQKLKTRVVYKNLNPEWNEELTFTVKDPN-TPLKVTVYDKDTF   78 (168)
T ss_pred             ccceEEEEEEEeecCeeeeccccCCCCeEEEEEC---CeeeeeeeecCCCCCcccceEEEEecCCC-ceEEEEEEeCCCC
Confidence            4689999999999999999988999999999998   78889999999999999999999999876 5899999999999


Q ss_pred             CCCCceEEEEEEEccccCCCe
Q 008305          341 MLAPEIIGIAQIALKELEPGK  361 (570)
Q Consensus       341 ~~~d~~lG~~~i~l~~l~~~~  361 (570)
                       ++||++|.|+|++..+....
T Consensus        79 -s~dD~mG~A~I~l~p~~~~~   98 (168)
T KOG1030|consen   79 -SSDDFMGEATIPLKPLLEAQ   98 (168)
T ss_pred             -CcccccceeeeccHHHHHHh
Confidence             99999999999999987654

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=1.3e-18  Score=149.60  Aligned_cols=114  Identities=32%  Similarity=0.582  Sum_probs=102.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ce
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DK  523 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~  523 (570)
                      +++|+|++|+||+..+..|.+||||+++++  ..+++|+++++|.||.|||+|.|.+.+.....|.|+|||++..++ ++
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~   78 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG--NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEF   78 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEEC--CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCe
Confidence            478999999999999988999999999995  467899999999999999999999987667899999999998765 69


Q ss_pred             eEEEEEeccccccCceEEEEEEecCCCCeEEEEEEEEE
Q 008305          524 MGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWT  561 (570)
Q Consensus       524 lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~  561 (570)
                      ||++.++++++..+.....|++|++. .|+|++.+.|.
T Consensus        79 iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~  115 (116)
T cd08376          79 IGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT  115 (116)
T ss_pred             EEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence            99999999999888888999999876 59999998874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.80  E-value=1.1e-18  Score=153.88  Aligned_cols=106  Identities=25%  Similarity=0.330  Sum_probs=91.3

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEE-ECC
Q 008305          443 RGVLSITVIAAENLPKVD-LIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVY-DHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~-d~~  517 (570)
                      .+.|.|+|++|+||+..+ ..|.+||||++++....   .+.||+++++++||+|||+|.|.+. ..+..|.|+|| |++
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~  106 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG  106 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence            378999999999998864 56889999999996432   4789999999999999999999998 67789999999 566


Q ss_pred             CCCC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT  549 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (570)
                      ..++ ++||++.|+|+++..+.....||+|...
T Consensus       107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028         107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence            6654 6999999999999777778899999764

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.80  E-value=8.5e-19  Score=158.27  Aligned_cols=123  Identities=28%  Similarity=0.497  Sum_probs=104.5

Q ss_pred             ceEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEEEeCCCceEEeeeeCCCCCC
Q 008305          263 CGTLDVKLVQAKELTNKD------------------------------LIGKSDPFVVIFVRPLRDRMKTSKTINNELNP  312 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~------------------------------~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP  312 (570)
                      .|+|.|+|++|++|+++|                              ..|.+||||+++++  +.+..+|++++++.||
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~~~~rT~v~~~~~nP   83 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GARVARTRVIENSENP   83 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--CeEeeEEEEeCCCCCC
Confidence            699999999999999987                              24678999999997  2345799999999999


Q ss_pred             eeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          313 IWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       313 ~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                      +|||+|.|.+.+. .+.|.|.|||++..  .+++||++.++++++..+...+.|++|.+..  .+..+..|+|+++++|.
T Consensus        84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~--~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~--~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          84 VWNESFHIYCAHY-ASHVEFTVKDNDVV--GAQLIGRAYIPVEDLLSGEPVEGWLPILDSN--GKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             ccceEEEEEccCC-CCEEEEEEEeCCCc--CCcEEEEEEEEhHHccCCCCcceEEECcCCC--CCCCCCCCEEEEEEEEC
Confidence            9999999998754 46899999999987  4689999999999999888889999997542  23445678999999983

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.80  E-value=3.8e-19  Score=153.64  Aligned_cols=105  Identities=28%  Similarity=0.445  Sum_probs=93.5

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEE-e--cCCCCeEEEEEEeC
Q 008305          263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTV-E--DASTQHLTVRVFDD  337 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v-~--~~~~~~L~~~v~d~  337 (570)
                      .|.|.|+|++|++|+..+ .+.+||||++++.+...  .+++|++++++.||+|||+|.|.+ .  +.....|.|+|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            589999999999999999 89999999999986543  468999999999999999999987 2  34556899999999


Q ss_pred             CCCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305          338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKL  369 (570)
Q Consensus       338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  369 (570)
                      +.. +++++||++.++|+++..+.....|++|
T Consensus        91 d~~-~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          91 DSL-VENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCC-cCCcEEEEEEEeccccccCCCccceEEC
Confidence            998 8899999999999999988778899987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.80  E-value=8e-19  Score=152.43  Aligned_cols=121  Identities=26%  Similarity=0.529  Sum_probs=105.2

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP  344 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d  344 (570)
                      .|+|+|++|++|...+..+.+||||+++++   ++.++|+++.++.||.|||+|.|.+.+.....|.|+|||++.. +.+
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~-~~~   76 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLV-SKN   76 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEEC---CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCC-CCC
Confidence            389999999999999888899999999986   5678999999999999999999999876667899999999998 889


Q ss_pred             ceEEEEEEEccccCCCeeeEEEEEeeccccc-cCCCcceeEEEEEE
Q 008305          345 EIIGIAQIALKELEPGKVKDVWLKLVKDVKV-QRDTKNRGQVHLEL  389 (570)
Q Consensus       345 ~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~G~l~l~l  389 (570)
                      ++||++.++++++..+.....|+.|.+.... ...++..|.|++.+
T Consensus        77 ~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          77 DFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             cEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            9999999999999877667899999764422 23567899999876

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.80  E-value=8.3e-19  Score=154.64  Aligned_cols=109  Identities=25%  Similarity=0.417  Sum_probs=95.5

Q ss_pred             ceEEEEEEEEecCCCCCC-CCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEE-eCC
Q 008305          263 CGTLDVKLVQAKELTNKD-LIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVF-DDE  338 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~-~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~-d~d  338 (570)
                      .|.|.|+|++|+||...+ ..|.+||||++++.+.+.  .+++|+++++++||+|||+|.|.+. .....|.++|| |++
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~  106 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG  106 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence            689999999999998864 568899999999986544  3789999999999999999999998 56779999999 577


Q ss_pred             CCCCCCceEEEEEEEccccCCCeeeEEEEEeeccc
Q 008305          339 GPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDV  373 (570)
Q Consensus       339 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  373 (570)
                      .. +++++||++.++|+++..+.....|++|.+..
T Consensus       107 ~~-~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~  140 (146)
T cd04028         107 RM-DKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS  140 (146)
T ss_pred             CC-CCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence            77 88999999999999997777778999997654

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.80  E-value=6.4e-19  Score=152.69  Aligned_cols=115  Identities=35%  Similarity=0.640  Sum_probs=101.6

Q ss_pred             eEEEEEEEEecCCCCCCC------CCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeC
Q 008305          264 GTLDVKLVQAKELTNKDL------IGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDD  337 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~------~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~  337 (570)
                      |+|+|+|++|++|+..+.      .|.+||||+++++   ++.++|++++++.||+|||+|.|.+.+...+.|.++|||+
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~   77 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE   77 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence            789999999999998774      3689999999997   4789999999999999999999999876678999999999


Q ss_pred             CCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      +..  ++++||++.++++++..+...+.|++|.        ....|+|+++++|
T Consensus        78 ~~~--~~~~iG~~~i~l~~l~~~~~~~~w~~L~--------~~~~G~~~~~~~~  121 (121)
T cd08391          78 DPD--KDDFLGRLSIDLGSVEKKGFIDEWLPLE--------DVKSGRLHLKLEW  121 (121)
T ss_pred             CCC--CCCcEEEEEEEHHHhcccCccceEEECc--------CCCCceEEEEEeC
Confidence            986  7899999999999998877788999994        2367999998765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.80  E-value=6.3e-19  Score=148.19  Aligned_cols=101  Identities=17%  Similarity=0.293  Sum_probs=86.1

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC--CCceEeCcccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK--AGNRAKTRVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~~~  518 (570)
                      .+.|+|+|++|+||+   ..|.+||||++++..  +..+++|+++++|.||+|||+|.|.+..  ..+..|.|+|||+|+
T Consensus        13 ~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr   89 (118)
T cd08677          13 KAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR   89 (118)
T ss_pred             CCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC
Confidence            689999999999998   246699999999953  3357899999999999999999999863  356789999999999


Q ss_pred             CCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305          519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHI  546 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L  546 (570)
                      +++ |+||++.+++.++.......+|..|
T Consensus        90 fs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          90 FSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CCCCceEEEEEEccccccCCccccchhcC
Confidence            977 7999999999998666666778654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=1.3e-18  Score=150.63  Aligned_cols=116  Identities=26%  Similarity=0.429  Sum_probs=102.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ce
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DK  523 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~  523 (570)
                      .|+|+|++|+||+..+..|.+||||++.+++ ...++|++++++.||.|||.|.|.+.+. ...|.|+|||++..++ ++
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~   78 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDF   78 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC-EEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcc
Confidence            3789999999999999889999999999863 4678999999999999999999998754 5789999999999855 79


Q ss_pred             eEEEEEeccccccCceEEEEEEecCC----CCeEEEEEEEEEe
Q 008305          524 MGKCIMTLTRVMMEGEIQDSFHIDGT----KSGKLFLNLKWTP  562 (570)
Q Consensus       524 lG~~~i~l~~l~~~~~~~~w~~L~~~----~~G~i~l~~~~~p  562 (570)
                      ||++.+++.++..+.....|++|.+.    ..|+|++.+++.|
T Consensus        79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          79 MGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             eEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence            99999999999988888999999644    3699999999986

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.79  E-value=1.4e-18  Score=151.19  Aligned_cols=122  Identities=26%  Similarity=0.447  Sum_probs=102.3

Q ss_pred             ceEEEEEEEEecCCCCCC-CCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCC
Q 008305          263 CGTLDVKLVQAKELTNKD-LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPM  341 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~  341 (570)
                      .|.|+|+|++|++|+..+ ..+.+||||+++++.. .+.++|+++.++.||.|||.|.|.+. ...+.|.|+|||++.. 
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~-   77 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDK-   77 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCC-
Confidence            489999999999999755 3467999999999732 36789999999999999999999988 4567999999999998 


Q ss_pred             CCCceEEEEEEEccccCCCeeeE-EEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305          342 LAPEIIGIAQIALKELEPGKVKD-VWLKLVKDVKVQRDTKNRGQVHLELLYCP  393 (570)
Q Consensus       342 ~~d~~lG~~~i~l~~l~~~~~~~-~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  393 (570)
                      ++|++||++.+++.++..+.... .|..+      ...++..|+|+++++|.|
T Consensus        78 ~~d~~iG~~~~~l~~l~~~~~~~~~~~~~------~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          78 RKDKLIGTAEFDLSSLLQNPEQENLTKNL------LRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             CCCceeEEEEEEHHHhccCccccCcchhh------hcCCccceEEEEEEEeCC
Confidence            89999999999999998766554 33433      235678899999999976

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.79  E-value=1.7e-18  Score=150.42  Aligned_cols=105  Identities=27%  Similarity=0.406  Sum_probs=90.6

Q ss_pred             ceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVDLI-GKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~  516 (570)
                      .+.|.|+|++|+||+..+.. |.+||||++++...   ..++||++++++.||+|||+|.|.+..  .....|.|+|||+
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~   93 (125)
T cd08393          14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR   93 (125)
T ss_pred             CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence            47899999999999998875 88999999999532   245799999999999999999999863  3456899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccCceEEEEEEec
Q 008305          517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHID  547 (570)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (570)
                      +..++ ++||++.++|.++........||+|.
T Consensus        94 ~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          94 DSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             CCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            98766 69999999999998777778999874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=1.3e-18  Score=150.09  Aligned_cols=114  Identities=24%  Similarity=0.452  Sum_probs=98.5

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP  344 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d  344 (570)
                      .|.|+|++|++|+..    .+||||+++++   .+..+|++++++.||+|||+|.|.+.+...+.|.++|||++..  ++
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~--~~   71 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA--KD   71 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC--cC
Confidence            378999999999877    68999999997   4678999999999999999999998876678999999999986  78


Q ss_pred             ceEEEEEEEccccCCC-----eeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          345 EIIGIAQIALKELEPG-----KVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       345 ~~lG~~~i~l~~l~~~-----~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      ++||++.++++++...     .....|++|.+..    ..+.+|+|++++.|
T Consensus        72 ~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----~~~~~G~i~l~~~~  119 (121)
T cd08378          72 DFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----GGRVGGELMLAVWF  119 (121)
T ss_pred             ceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC----CCccceEEEEEEEe
Confidence            9999999999998653     2356899997542    35788999999987

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.79  E-value=1.9e-18  Score=151.28  Aligned_cols=115  Identities=33%  Similarity=0.614  Sum_probs=101.3

Q ss_pred             eEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC
Q 008305          444 GVLSITVIAAENLPKVDL--IGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK  521 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~--~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~  521 (570)
                      |.|+|+|++|+||+..+.  .+.+||||++.++  ..+++|++++++.||.|||.|.|.+.+.....|.|+|||++..++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~--~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~   78 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG--AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAG   78 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC--CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCC
Confidence            689999999999999887  8899999999985  467899999999999999999999987667899999999998754


Q ss_pred             -ceeEEEEEecccccc---CceEEEEEEecCC-------CCeEEEEEEEE
Q 008305          522 -DKMGKCIMTLTRVMM---EGEIQDSFHIDGT-------KSGKLFLNLKW  560 (570)
Q Consensus       522 -d~lG~~~i~l~~l~~---~~~~~~w~~L~~~-------~~G~i~l~~~~  560 (570)
                       ++||++.+++.++..   .....+||+|.+.       .+|+|+++++|
T Consensus        79 ~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          79 KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence             799999999999873   2345899999765       48999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=1.9e-18  Score=154.26  Aligned_cols=119  Identities=25%  Similarity=0.352  Sum_probs=101.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCC-CCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-c
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHD-TLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-D  522 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d  522 (570)
                      .|.|+|++|+||+..+..|.+||||++.+++  ++.+|+++.+ +.||+|||.|+|.+.++..+.|.|+|+|++..++ +
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~--~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd   78 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN--QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDE   78 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECC--EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCC
Confidence            3799999999999999999999999999964  7789998876 6999999999999987666789999999987754 7


Q ss_pred             eeEEEEEeccccccC----ceEEEEEEecCCC-----------CeEEEEEEEEEecCC
Q 008305          523 KMGKCIMTLTRVMME----GEIQDSFHIDGTK-----------SGKLFLNLKWTPQLV  565 (570)
Q Consensus       523 ~lG~~~i~l~~l~~~----~~~~~w~~L~~~~-----------~G~i~l~~~~~p~~~  565 (570)
                      +||++.++|+++..+    ....+||+|.+..           +|+|+|+++|.+...
T Consensus        79 ~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~  136 (150)
T cd04019          79 PLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH  136 (150)
T ss_pred             eEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence            999999999998753    2358999997542           499999999986544

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.78  E-value=1.2e-18  Score=151.46  Aligned_cols=109  Identities=22%  Similarity=0.419  Sum_probs=95.2

Q ss_pred             cCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEE
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLI-GKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRV  334 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~-g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v  334 (570)
                      ....+.|.|+|++|+||+..+.. |.+||||++++.+..  ..+++|+++++++||+|||+|.|.+..  .....|.|+|
T Consensus        11 ~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V   90 (125)
T cd08393          11 DPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV   90 (125)
T ss_pred             ECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence            34568999999999999999875 889999999998654  235799999999999999999999863  3456899999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL  369 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  369 (570)
                      ||++.. +++++||++.++|+++..+.....|++|
T Consensus        91 ~d~~~~-~~~~~iG~~~i~L~~~~~~~~~~~W~~L  124 (125)
T cd08393          91 WHRDSL-GRNSFLGEVEVDLGSWDWSNTQPTWYPL  124 (125)
T ss_pred             EeCCCC-CCCcEeEEEEEecCccccCCCCcceEEC
Confidence            999998 8999999999999999877777889987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.78  E-value=1.5e-18  Score=150.87  Aligned_cols=110  Identities=33%  Similarity=0.538  Sum_probs=98.1

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEeC
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFDD  337 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d~  337 (570)
                      .+..|.|.|+|++|++|+..+..|.+||||++++.+.+.+.++|++++++.||+|||+|.|.+...  ....|.++|||+
T Consensus        12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~   91 (124)
T cd08387          12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF   91 (124)
T ss_pred             CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence            456789999999999999999889999999999976556678999999999999999999998643  346899999999


Q ss_pred             CCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      +.. +++++||++.++++++..+...+.|++|.
T Consensus        92 ~~~-~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          92 DQF-SRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCC-CCCceeEEEEEecccccCCCCcceEEECc
Confidence            998 88999999999999998777889999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.78  E-value=1.8e-18  Score=150.04  Aligned_cols=110  Identities=19%  Similarity=0.336  Sum_probs=95.9

Q ss_pred             ccCCceEEEEEEEEecCCCCCCC-CCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDL-IGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVR  333 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~-~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~  333 (570)
                      +....|.|.|+|++|+||+..+. .|.+||||++++.+.+.  .+++|++++++.||+|||+|.|.+...  ....|.|+
T Consensus        10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~   89 (125)
T cd04029          10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS   89 (125)
T ss_pred             EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence            34578899999999999998875 47899999999986543  367999999999999999999998642  35679999


Q ss_pred             EEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305          334 VFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL  369 (570)
Q Consensus       334 v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  369 (570)
                      |||++.. +++++||++.+++.++......+.|++|
T Consensus        90 V~d~~~~-~~~~~lG~~~i~l~~~~~~~~~~~w~~l  124 (125)
T cd04029          90 VWHYDRF-GRNTFLGEVEIPLDSWNFDSQHEECLPL  124 (125)
T ss_pred             EEECCCC-CCCcEEEEEEEeCCcccccCCcccEEEC
Confidence            9999998 8999999999999999888888999987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.78  E-value=4.9e-18  Score=149.71  Aligned_cols=122  Identities=29%  Similarity=0.454  Sum_probs=102.7

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC----CceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR----DRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP  340 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~  340 (570)
                      .|+|+|++|++|+..+..|.+||||++++....    ...++|++++++.||.|||+|.|.+... .+.|.|+|||++..
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence            489999999999999988999999999998431    1256899999999999999999998743 46899999999998


Q ss_pred             CCCCceEEEEEEEccccCCCe------eeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          341 MLAPEIIGIAQIALKELEPGK------VKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       341 ~~~d~~lG~~~i~l~~l~~~~------~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                       +.+++||++.++++++..+.      ....|++|.+.   ...++..|+|++++.|
T Consensus        80 -~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~---~~~~~~~G~l~~~~~~  132 (133)
T cd04033          80 -TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR---SSKSRVKGHLRLYMAY  132 (133)
T ss_pred             -CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec---CCCCcceeEEEEEEee
Confidence             88999999999999997643      24689999753   2245789999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.78  E-value=3.8e-18  Score=148.05  Aligned_cols=105  Identities=23%  Similarity=0.422  Sum_probs=90.9

Q ss_pred             ceEEEEEEEEeecCCCCCC-CCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVDL-IGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~-~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~  516 (570)
                      .+.|.|+|++|+||+..+. .|.+||||++++...   ..++||++++++.||.|||+|.|.+...  ....|.|+|||+
T Consensus        14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~   93 (125)
T cd04029          14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY   93 (125)
T ss_pred             CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence            5889999999999998765 478999999999532   2467999999999999999999998642  456899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccCceEEEEEEec
Q 008305          517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHID  547 (570)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (570)
                      +..++ ++||++.+++.++........||+|.
T Consensus        94 ~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          94 DRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             CCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            98876 69999999999999888889999983

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.78  E-value=5.2e-18  Score=147.88  Aligned_cols=116  Identities=21%  Similarity=0.448  Sum_probs=101.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-cee
Q 008305          446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DKM  524 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l  524 (570)
                      |.|+|++|+||+.  ..|.+||||+++++....+++|++++++.||.|||.|.|.+.. ....|.|+|||++..++ ++|
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l   77 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL   77 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence            5799999999998  6789999999999643467899999999999999999999853 46789999999998865 699


Q ss_pred             EEEEEeccccccCceEEEEEEecCC------CCeEEEEEEEEEecC
Q 008305          525 GKCIMTLTRVMMEGEIQDSFHIDGT------KSGKLFLNLKWTPQL  564 (570)
Q Consensus       525 G~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~~  564 (570)
                      |++.++++++.......+||+|.+.      ..|+|++++.|.+..
T Consensus        78 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~  123 (126)
T cd08678          78 GLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA  123 (126)
T ss_pred             EEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence            9999999999988878899999744      489999999998765

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.77  E-value=4.4e-18  Score=148.00  Aligned_cols=105  Identities=28%  Similarity=0.492  Sum_probs=92.7

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTF  519 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~  519 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++.. +...+||++++++.||.|||+|.|.+...  ....|.|+|||++..
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~   94 (124)
T cd08387          15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF   94 (124)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC
Confidence            588999999999999999889999999999953 34578999999999999999999998643  356899999999987


Q ss_pred             CC-ceeEEEEEeccccccCceEEEEEEec
Q 008305          520 GK-DKMGKCIMTLTRVMMEGEIQDSFHID  547 (570)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (570)
                      ++ ++||++.++++++..++....||+|.
T Consensus        95 ~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          95 SRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCceeEEEEEecccccCCCCcceEEECc
Confidence            65 69999999999998777889999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.77  E-value=6.9e-18  Score=145.73  Aligned_cols=118  Identities=34%  Similarity=0.604  Sum_probs=102.3

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCC
Q 008305          264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLA  343 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~  343 (570)
                      |.|.|+|++|++|+..+..+.+||||+++++   ...++|++++++.||.|||+|.|.+.+. .+.+.|+|||++.. ++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~-~~   75 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKD-KK   75 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCC-CC
Confidence            7899999999999999988999999999986   4567999999999999999999998754 46899999999987 78


Q ss_pred             CceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          344 PEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       344 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      +++||++.+++.++..+.  ..|+.|...   ....+..|+|.+++.+
T Consensus        76 ~~~iG~~~~~l~~~~~~~--~~~~~l~~~---~~~~~~~G~i~l~~~~  118 (119)
T cd08377          76 PEFLGKVAIPLLSIKNGE--RKWYALKDK---KLRTRAKGSILLEMDV  118 (119)
T ss_pred             CceeeEEEEEHHHCCCCC--ceEEECccc---CCCCceeeEEEEEEEe
Confidence            999999999999997653  579998643   2245679999999876

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.77  E-value=3.8e-18  Score=148.99  Aligned_cols=115  Identities=24%  Similarity=0.419  Sum_probs=99.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCC---CcEEEEEEEECCCCC-
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ---HEMLILDVYDHDTFG-  520 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~---~~~L~i~V~d~~~~~-  520 (570)
                      .|+|+|++|+||+..+..|.+||||++++++  .++||++++++.||.|||.|.|.+.++.   ...|.|+|||++..+ 
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~   78 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG--QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGR   78 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcC
Confidence            3799999999999998889999999999953  6789999999999999999999997532   367999999998874 


Q ss_pred             -CceeEEEEEeccccc-cCceEEEEEEecCC-----CCeEEEEEEEEE
Q 008305          521 -KDKMGKCIMTLTRVM-MEGEIQDSFHIDGT-----KSGKLFLNLKWT  561 (570)
Q Consensus       521 -~d~lG~~~i~l~~l~-~~~~~~~w~~L~~~-----~~G~i~l~~~~~  561 (570)
                       +++||++.++++++. .+....+||+|+..     .+|+|++++.++
T Consensus        79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence             479999999999998 34456899999753     489999999875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.77  E-value=5.8e-18  Score=147.17  Aligned_cols=105  Identities=28%  Similarity=0.401  Sum_probs=89.0

Q ss_pred             ceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVDLI-GKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~  516 (570)
                      .+.|.|+|++|+||+..+.. |.+||||++++...   ..++||++++++.||+|||+|.|.+...  ....|.+.|||.
T Consensus        14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~   93 (128)
T cd08392          14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS   93 (128)
T ss_pred             CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence            58999999999999998864 89999999999532   3477999999999999999999998642  456899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccC---ceEEEEEEec
Q 008305          517 DTFGK-DKMGKCIMTLTRVMME---GEIQDSFHID  547 (570)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~---~~~~~w~~L~  547 (570)
                      +..++ ++||++.|+|+++...   ....+||+|.
T Consensus        94 ~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          94 RTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             CCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            98765 7999999999998643   2568999973

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.77  E-value=8.6e-18  Score=146.37  Aligned_cols=123  Identities=18%  Similarity=0.257  Sum_probs=103.8

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCC
Q 008305          262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPM  341 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~  341 (570)
                      |.++|+|+|++|++|...+..|.+||||++.++   ++.++|++++++.||+|||.|.|.+.+. ...|.|+|||++.. 
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~-   75 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL-   75 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEEC---CEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence            568999999999999999988999999999986   5678999999999999999999988764 56899999999987 


Q ss_pred             CCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305          342 LAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCP  393 (570)
Q Consensus       342 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  393 (570)
                       .|++||++.+++.++..  ....|++|..... ...++..|+|.+++.+.+
T Consensus        76 -~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~-~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          76 -CDEFLGQATLSADPNDS--QTLRTLPLRKRGR-DAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             -CCCceEEEEEecccCCC--cCceEEEcccCCC-CCCCCCCCEEEEEEEEcc
Confidence             58999999999998643  3456778753322 356788999999998753

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.77  E-value=3.7e-18  Score=148.49  Aligned_cols=110  Identities=28%  Similarity=0.497  Sum_probs=97.7

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEeC
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFDD  337 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d~  337 (570)
                      ....|.|.|+|++|++|+..+..+.+||||++++.+...+.++|++++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus        12 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~   91 (124)
T cd08385          12 DFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF   91 (124)
T ss_pred             eCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence            346789999999999999999889999999999986656678999999999999999999998642  346899999999


Q ss_pred             CCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      +.. +++++||++.++++++..+...+.|++|.
T Consensus        92 d~~-~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          92 DRF-SKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCC-CCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            998 88999999999999998888889999983

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.76  E-value=8e-18  Score=151.92  Aligned_cols=118  Identities=25%  Similarity=0.484  Sum_probs=101.9

Q ss_pred             cceEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEEeCCCceEeCcccCCCCCC
Q 008305          442 VRGVLSITVIAAENLPKVD------------------------------LIGKADPFVVLQLKKAGNRAKTRVAHDTLNP  491 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~------------------------------~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP  491 (570)
                      --|.|.|+|++|++|+.+|                              ..|.+||||++.+++ ....||++++++.||
T Consensus         5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-~~~~rT~v~~~~~nP   83 (158)
T cd04015           5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-ARVARTRVIENSENP   83 (158)
T ss_pred             EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-eEeeEEEEeCCCCCC
Confidence            3599999999999999877                              346689999999964 355799999999999


Q ss_pred             eeeeEEEEEeecCCCcEEEEEEEECCCCCCceeEEEEEeccccccCceEEEEEEecCC------CCeEEEEEEEEE
Q 008305          492 VWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGT------KSGKLFLNLKWT  561 (570)
Q Consensus       492 ~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~  561 (570)
                      .|||+|.|.+.+. .+.|.|+|||++..++++||++.++++++..+...++||+|.+.      ..|+|+++++|.
T Consensus        84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          84 VWNESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             ccceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence            9999999998654 46899999999988889999999999999887788999999542      368999999984

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.76  E-value=2.4e-18  Score=146.32  Aligned_cols=102  Identities=28%  Similarity=0.523  Sum_probs=89.5

Q ss_pred             eEEEEEEEEecCCCCCCCC-CCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC---CCCeEEEEEEeCCC
Q 008305          264 GTLDVKLVQAKELTNKDLI-GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA---STQHLTVRVFDDEG  339 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~---~~~~L~~~v~d~d~  339 (570)
                      |+|+|+|++|++|+..+.. +.+||||++++.+.+...++|+++++++||+|||+|.|.+...   ..+.|.++|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            7999999999999999987 8999999999975545678999999999999999999987644   34689999999999


Q ss_pred             CCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305          340 PMLAPEIIGIAQIALKELEPGKVKDVWLKL  369 (570)
Q Consensus       340 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  369 (570)
                      . +.|++||++.++++++..   ...|+++
T Consensus        81 ~-~~dd~lG~~~i~l~~l~~---~~~~~~~  106 (111)
T cd04041          81 F-TADDRLGRVEIDLKELIE---DRNWMGR  106 (111)
T ss_pred             C-CCCCcceEEEEEHHHHhc---CCCCCcc
Confidence            8 889999999999999984   4467776

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.76  E-value=1.3e-17  Score=145.13  Aligned_cols=105  Identities=32%  Similarity=0.558  Sum_probs=92.1

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTF  519 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~  519 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++.. ...+++|++++++.||.|||+|.|.+...  ....|.|+|||++.+
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~   94 (124)
T cd08385          15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF   94 (124)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence            578999999999999999889999999999863 23578999999999999999999998642  356899999999988


Q ss_pred             CC-ceeEEEEEeccccccCceEEEEEEec
Q 008305          520 GK-DKMGKCIMTLTRVMMEGEIQDSFHID  547 (570)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (570)
                      ++ ++||++.++++++..+....+|++|+
T Consensus        95 ~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          95 SKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            65 69999999999998877789999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.76  E-value=7.5e-18  Score=145.32  Aligned_cols=110  Identities=28%  Similarity=0.454  Sum_probs=95.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCcee
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKM  524 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~l  524 (570)
                      .|+|+|++|+||+..    .+||||++.++.  .+.||++++++.||+|||+|.|.+.+.....|.|+|||++..++++|
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~--~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~l   74 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLGN--YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFL   74 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEECC--ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCcee
Confidence            378999999999887    689999999964  67899999999999999999999877677889999999998766899


Q ss_pred             EEEEEeccccccCc-----eEEEEEEecCCC----CeEEEEEEEE
Q 008305          525 GKCIMTLTRVMMEG-----EIQDSFHIDGTK----SGKLFLNLKW  560 (570)
Q Consensus       525 G~~~i~l~~l~~~~-----~~~~w~~L~~~~----~G~i~l~~~~  560 (570)
                      |++.++++++....     ...+||+|.+..    .|+|++.+.|
T Consensus        75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             eeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            99999999987543     246899997654    6999999987

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.76  E-value=6.9e-18  Score=144.90  Aligned_cols=103  Identities=21%  Similarity=0.396  Sum_probs=88.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC-CCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG-QHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~V~d~~~  518 (570)
                      .+.|.|+|++|+||+..+ .|.+||||++++...   ..++||++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus        11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~   89 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS   89 (119)
T ss_pred             CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence            478999999999999988 789999999999642   2467999999999999999999998642 23579999999987


Q ss_pred             CC--CceeEEEEEeccccccCceEEEEEEe
Q 008305          519 FG--KDKMGKCIMTLTRVMMEGEIQDSFHI  546 (570)
Q Consensus       519 ~~--~d~lG~~~i~l~~l~~~~~~~~w~~L  546 (570)
                      .+  +++||++.+++.++..+....+||.|
T Consensus        90 ~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          90 KSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            64  36999999999999877778999976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.76  E-value=5.6e-18  Score=150.41  Aligned_cols=105  Identities=23%  Similarity=0.360  Sum_probs=89.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEe---------------cCCCC
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVE---------------DASTQ  328 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~---------------~~~~~  328 (570)
                      |.|+|++|++|..  ..|.+||||++++.+..  .+.++|++++++.||+|||+|.|.+.               +....
T Consensus         2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd04010           2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL   79 (148)
T ss_pred             EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence            7899999999988  46899999999998532  24678999999999999999999985               12235


Q ss_pred             eEEEEEEeCCCCCCCCceEEEEEEEccccCCC-eeeEEEEEeeccc
Q 008305          329 HLTVRVFDDEGPMLAPEIIGIAQIALKELEPG-KVKDVWLKLVKDV  373 (570)
Q Consensus       329 ~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L~~~~  373 (570)
                      .|.|+|||++.. +.|++||++.+++.++..+ .....||+|.+..
T Consensus        80 ~L~i~V~d~~~~-~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~  124 (148)
T cd04010          80 ELRVDLWHASMG-GGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE  124 (148)
T ss_pred             EEEEEEEcCCCC-CCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence            799999999998 8999999999999999876 5678999997653

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.76  E-value=1e-17  Score=146.03  Aligned_cols=110  Identities=19%  Similarity=0.280  Sum_probs=93.4

Q ss_pred             cCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEE-Ee--cCCCCeEEEEEE
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLI-GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFT-VE--DASTQHLTVRVF  335 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~-v~--~~~~~~L~~~v~  335 (570)
                      ....+.|.|+|++|++|+..+.. +.+||||++++.+...++.||++++++.||+|||+|.|. +.  +.....|.++||
T Consensus        12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~   91 (128)
T cd08388          12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL   91 (128)
T ss_pred             ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence            34578999999999999998876 889999999998766667899999999999999999993 43  223457999999


Q ss_pred             eCCCCCCCCceEEEEEEEccccCCC--eeeEEEEEee
Q 008305          336 DDEGPMLAPEIIGIAQIALKELEPG--KVKDVWLKLV  370 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~  370 (570)
                      |++.. ++|++||++.++|+++...  .....|++++
T Consensus        92 d~d~~-~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          92 SFDRY-SRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             EcCCC-CCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            99998 8999999999999999644  5578898874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.76  E-value=4.5e-18  Score=146.48  Aligned_cols=110  Identities=21%  Similarity=0.329  Sum_probs=94.9

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC---ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD---RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVR  333 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~  333 (570)
                      |.+..|.|.|+|++|+||+..+..+.+||||++++.+.++   ..++|++++++.||+|||+|.|.+...  ....|.|.
T Consensus         9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~   88 (124)
T cd08680           9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD   88 (124)
T ss_pred             ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence            4466789999999999999988788999999999997663   478999999999999999999998543  45689999


Q ss_pred             EEeCCCCCCCCceEEEEEEEccccCCC-eeeEEEEEe
Q 008305          334 VFDDEGPMLAPEIIGIAQIALKELEPG-KVKDVWLKL  369 (570)
Q Consensus       334 v~d~d~~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L  369 (570)
                      |||++.. +++++||++.++|+++... .....|++|
T Consensus        89 V~~~~~~-~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          89 VCSVGPD-QQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             EEeCCCC-CceeEEEEEEEEhhhccCCCccccccccC
Confidence            9999998 8999999999999999544 346678865

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.76  E-value=1.5e-17  Score=146.31  Aligned_cols=115  Identities=26%  Similarity=0.477  Sum_probs=100.2

Q ss_pred             ceEEEEEEEEecCCCCCCCC----------CCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEE
Q 008305          263 CGTLDVKLVQAKELTNKDLI----------GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTV  332 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~~----------g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~  332 (570)
                      .|.|+|+|++|++|...+..          +.+||||+++++  +.+..+|+++.++.||.|||+|.|.+.+  ...|.|
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~   78 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLEL   78 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEE
Confidence            58999999999999988752          578999999997  3345789999999999999999999973  468999


Q ss_pred             EEEeCCCCCCCCceEEEEEEEccccCC--CeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          333 RVFDDEGPMLAPEIIGIAQIALKELEP--GKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       333 ~v~d~d~~~~~d~~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                      .|||++.. +.+++||++.++|+++..  +...+.|++|.          ..|+|++.++|.
T Consensus        79 ~v~d~~~~-~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~l~l~~~~~  129 (132)
T cd04014          79 TVFHDAAI-GPDDFVANCTISFEDLIQRGSGSFDLWVDLE----------PQGKLHVKIELK  129 (132)
T ss_pred             EEEeCCCC-CCCceEEEEEEEhHHhcccCCCcccEEEEcc----------CCcEEEEEEEEe
Confidence            99999988 889999999999999987  56679999993          469999999986

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.76  E-value=9.4e-18  Score=141.22  Aligned_cols=102  Identities=27%  Similarity=0.526  Sum_probs=91.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCcee
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKM  524 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~l  524 (570)
                      .|.|+|++|+||+..+..+.+||||++++++  ..+||++++++.||.|||.|.|.+.++..+.|.|+|+|++.  +++|
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~i   76 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK--TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSL   76 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECC--EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCcc
Confidence            3789999999999988889999999999964  78899999999999999999999988777899999999887  6799


Q ss_pred             EEEEEeccccccCc--eEEEEEEecCCC
Q 008305          525 GKCIMTLTRVMMEG--EIQDSFHIDGTK  550 (570)
Q Consensus       525 G~~~i~l~~l~~~~--~~~~w~~L~~~~  550 (570)
                      |++.++|.++....  ..++||+|++.+
T Consensus        77 G~~~i~l~~l~~~~~~~~~~w~~L~~~g  104 (105)
T cd04050          77 GSLTLPLSELLKEPDLTLDQPFPLDNSG  104 (105)
T ss_pred             EEEEEEHHHhhccccceeeeeEecCCCC
Confidence            99999999998664  568999998754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.76  E-value=1.3e-17  Score=143.94  Aligned_cols=113  Identities=21%  Similarity=0.334  Sum_probs=97.3

Q ss_pred             EEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ce
Q 008305          446 LSITVIAAENLPKVD-LIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DK  523 (570)
Q Consensus       446 L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~  523 (570)
                      |.|.|++|+||+..+ ..|.+||||++.++ +...++|+++++|.||.|||+|.|.+.+. ...|.|.|||++..++ ++
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~-~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~   79 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD-QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSV   79 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEEC-CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCce
Confidence            678999999999874 45789999999995 34578999999999999999999999743 4689999999998865 69


Q ss_pred             eEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEEEE
Q 008305          524 MGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNLKW  560 (570)
Q Consensus       524 lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~  560 (570)
                      ||.+.++++++......+.||+|+..     .+|+|+++++|
T Consensus        80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            99999999999877778999999753     37999999875

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.75  E-value=1e-17  Score=145.61  Aligned_cols=110  Identities=20%  Similarity=0.360  Sum_probs=93.8

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLI-GKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVR  333 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~-g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~  333 (570)
                      |....+.|.|+|++|+||+..+.. |.+||||++++.+..+  .++||++++++.||+|||+|.|.+...  ....|.+.
T Consensus        10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~   89 (128)
T cd08392          10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS   89 (128)
T ss_pred             EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence            345678999999999999998865 8999999999987653  367999999999999999999998543  34689999


Q ss_pred             EEeCCCCCCCCceEEEEEEEccccCCC---eeeEEEEEe
Q 008305          334 VFDDEGPMLAPEIIGIAQIALKELEPG---KVKDVWLKL  369 (570)
Q Consensus       334 v~d~d~~~~~d~~lG~~~i~l~~l~~~---~~~~~w~~L  369 (570)
                      |||++.. +++++||++.|+|+++...   .....||+|
T Consensus        90 V~~~~~~-~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          90 VWHSRTL-KRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             EEeCCCC-cCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            9999998 8999999999999999543   356789987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.75  E-value=1.8e-17  Score=143.28  Aligned_cols=118  Identities=25%  Similarity=0.533  Sum_probs=99.5

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE  345 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~  345 (570)
                      |.|+|++|++|++.+..|.+||||+++++  +....+|+++.++.||+|||.|.|.+... .+.|.|+|||++.. ++|+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~-~~d~   77 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTL-SRDD   77 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCC-CCCC
Confidence            78999999999999988999999999996  23357999999999999999999998643 46899999999998 8999


Q ss_pred             eEEEEEEEccccCCC-eeeEEEEEeeccccccCCCcceeEEEEEEE
Q 008305          346 IIGIAQIALKELEPG-KVKDVWLKLVKDVKVQRDTKNRGQVHLELL  390 (570)
Q Consensus       346 ~lG~~~i~l~~l~~~-~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~  390 (570)
                      +||++.+++.++..+ ...+.|++|.+.   .......|+|++.+.
T Consensus        78 ~iG~~~~~~~~~~~~~~~~~~W~~L~~~---~~~~~~~G~i~l~~~  120 (121)
T cd04054          78 VIGKVSLTREVISAHPRGIDGWMNLTEV---DPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEEEEcHHHhccCCCCCCcEEECeee---CCCCccccEEEEEEE
Confidence            999999999988753 346799999643   224457899988764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.75  E-value=2.8e-17  Score=143.55  Aligned_cols=117  Identities=29%  Similarity=0.453  Sum_probs=101.3

Q ss_pred             EEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEeCCCCCCCCceE
Q 008305          270 LVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFDDEGPMLAPEII  347 (570)
Q Consensus       270 V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d~d~~~~~d~~l  347 (570)
                      |++|++|+.  ..|.+||||+++++   +..++|++++++.||+|||+|.|.+...  ..+.|.|+|||++.. ++|++|
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~---~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~-~~d~~i   75 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKV-GRNRLI   75 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEEC---CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCC-CCCceE
Confidence            688999988  57899999999996   5678999999999999999999999754  467899999999998 889999


Q ss_pred             EEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEeccC
Q 008305          348 GIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGT  396 (570)
Q Consensus       348 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~  396 (570)
                      |++.++++++..+.....|++|.+..    .....|+|+++++|.|...
T Consensus        76 G~~~~~l~~l~~~~~~~~~~~L~~~~----~~~~~~~l~l~~~~~~~~~  120 (127)
T cd08373          76 GSATVSLQDLVSEGLLEVTEPLLDSN----GRPTGATISLEVSYQPPDG  120 (127)
T ss_pred             EEEEEEhhHcccCCceEEEEeCcCCC----CCcccEEEEEEEEEeCCCC
Confidence            99999999999888888999996432    2335799999999998644

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.75  E-value=2.5e-17  Score=143.31  Aligned_cols=116  Identities=19%  Similarity=0.377  Sum_probs=97.3

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-  521 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-  521 (570)
                      ...|+|+|++|+||+..   +.+||||++.+++ ....||++ +++.||.|||.|.|.+..+....+.|.|||++..++ 
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~-~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d   77 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNE-VKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKD   77 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEECC-EeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCC
Confidence            35699999999999874   4689999999963 34578887 468999999999998765544679999999988865 


Q ss_pred             ceeEEEEEeccccccCceEEEEEEecCC------CCeEEEEEEEEEec
Q 008305          522 DKMGKCIMTLTRVMMEGEIQDSFHIDGT------KSGKLFLNLKWTPQ  563 (570)
Q Consensus       522 d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~  563 (570)
                      ++||++.++|+++..+...+.||+|.+.      ..|+|+++++|.+.
T Consensus        78 ~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~  125 (126)
T cd08400          78 SEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE  125 (126)
T ss_pred             CeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence            6999999999999887788999999653      35999999999874

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.75  E-value=2.5e-17  Score=145.26  Aligned_cols=120  Identities=22%  Similarity=0.378  Sum_probs=100.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC---------CCCeEEEEEE
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA---------STQHLTVRVF  335 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~---------~~~~L~~~v~  335 (570)
                      .|+|+|++|++|+..+..|.+||||+++++   ++.++|++++++.||.|||+|.|.+...         ....+.++||
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~   78 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF   78 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence            589999999999999989999999999997   5678999999999999999999975422         1257999999


Q ss_pred             eCCCCCCCCceEEEEEE-EccccC---CCeeeEEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305          336 DDEGPMLAPEIIGIAQI-ALKELE---PGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPF  394 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i-~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  394 (570)
                      |++.. ++|++||++.+ ++..+.   .+....+|++|.+      .+...|+|.+++.+.+.
T Consensus        79 d~d~~-~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~------~~~~~Geil~~~~~~~~  134 (135)
T cd04017          79 DQDSV-GKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK------GGQSAGELLAAFELIEV  134 (135)
T ss_pred             eCcCC-CCCccceEEEeeeeeecccCCCCCCCceEEEeec------CCCchhheeEEeEEEEe
Confidence            99998 88999999987 444443   2456789999953      34689999999999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.75  E-value=1.9e-17  Score=143.56  Aligned_cols=118  Identities=29%  Similarity=0.470  Sum_probs=98.5

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCC--
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLA--  343 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~--  343 (570)
                      |+|+|++|++|+..+..+.+||||+++++  +.+.++|++++++.||.|||+|.|.+..  .+.|.++|||++.. +.  
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~-~~~~   76 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKF-KKKD   76 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCC-CCCC
Confidence            78999999999999988999999999995  3567899999999999999999999975  57999999999987 54  


Q ss_pred             CceEEEEEEEccccCCCe-eeEEEEEeeccccccCCCcceeEEEEEE
Q 008305          344 PEIIGIAQIALKELEPGK-VKDVWLKLVKDVKVQRDTKNRGQVHLEL  389 (570)
Q Consensus       344 d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~~~~~~~~~G~l~l~l  389 (570)
                      |++||++.+++.++.... ....|++|.+... ...+...|+|.+++
T Consensus        77 d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~-~~~~~~~G~v~~~~  122 (123)
T cd08382          77 QGFLGCVRIRANAVLPLKDTGYQRLDLRKLKK-SDNLSVRGKIVVSL  122 (123)
T ss_pred             CceEeEEEEEHHHccccCCCccceeEeecCCC-CCCceEeeEEEEEe
Confidence            589999999999997544 3467999854321 23456789998875

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.75  E-value=1.4e-17  Score=143.36  Aligned_cols=104  Identities=17%  Similarity=0.251  Sum_probs=89.3

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC----CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA----GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~----~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~  516 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++-..    ..++||++++++.||+|||+|.|.+...  .+..|.|+|||.
T Consensus        13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~   92 (124)
T cd08680          13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSV   92 (124)
T ss_pred             CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeC
Confidence            5889999999999999888889999999998432    2478999999999999999999998632  567899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccCc-eEEEEEEe
Q 008305          517 DTFGK-DKMGKCIMTLTRVMMEG-EIQDSFHI  546 (570)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~-~~~~w~~L  546 (570)
                      +..++ ++||++.++|+++.... ...+||+|
T Consensus        93 ~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          93 GPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             CCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            98765 69999999999995443 57889876

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.75  E-value=1.6e-17  Score=141.77  Aligned_cols=104  Identities=20%  Similarity=0.300  Sum_probs=88.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-----CCceEeCcccCCCCCCeeeeEEEEEeec---CCCcEEEEEEEEC
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKK-----AGNRAKTRVAHDTLNPVWNQTFDFVVED---GQHEMLILDVYDH  516 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~~kT~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~V~d~  516 (570)
                      .|+|+|++|+||+..+ .|.+||||+|++.+     ..++++|+++.++.||+|||+|+|.+.+   .....|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            3899999999999887 49999999999842     2245789999999999999999999974   2345799999999


Q ss_pred             CCCCC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305          517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT  549 (570)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (570)
                      +..++ ++||++.+++.++..++....|++|+..
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            87765 6999999999999988888999999653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.75  E-value=7.7e-18  Score=144.63  Aligned_cols=107  Identities=21%  Similarity=0.421  Sum_probs=90.9

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEEEecCC-CCeEEEEEEeCC
Q 008305          262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFTVEDAS-TQHLTVRVFDDE  338 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~v~~~~-~~~L~~~v~d~d  338 (570)
                      ..|.|.|+|++|+||+..+ .|.+||||++++.+...+  +++|++++++.||+|||+|.|.+.... ...|.+.|||++
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            4579999999999999988 789999999999975443  568999999999999999999985432 346899999999


Q ss_pred             CCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305          339 GPMLAPEIIGIAQIALKELEPGKVKDVWLKL  369 (570)
Q Consensus       339 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  369 (570)
                      ....++++||++.+++.++..+...+.||.|
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            8622478999999999999877777899975

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.75  E-value=3.6e-17  Score=142.98  Aligned_cols=105  Identities=30%  Similarity=0.490  Sum_probs=91.1

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~  517 (570)
                      .+.|+|+|++|+||+..+..+.+||||++++...   ..++||++++++.||.|||+|.|.+...  ....|.|.|||.+
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~   94 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK   94 (127)
T ss_pred             CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence            5889999999999999998899999999998532   3578999999999999999999998532  4568999999998


Q ss_pred             CC--C-CceeEEEEEeccccccCceEEEEEEec
Q 008305          518 TF--G-KDKMGKCIMTLTRVMMEGEIQDSFHID  547 (570)
Q Consensus       518 ~~--~-~d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (570)
                      ..  + +++||++.++++++..+....+||+|.
T Consensus        95 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          95 SFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             cccCCCCceEEEEEEecccccccCCccceEECc
Confidence            74  3 479999999999998777789999874

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.75  E-value=2.7e-17  Score=143.52  Aligned_cols=117  Identities=26%  Similarity=0.471  Sum_probs=100.1

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP  344 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d  344 (570)
                      .|+|+|++|++|+..+..+.+||||++.+...+.+.++|+++.++.||.|||+|.|.+.....+.|.|+|||++.. +.+
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~-~~~   80 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFV-GKH   80 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCC-CCC
Confidence            5889999999999999889999999998764334568999999999999999999999876567899999999988 889


Q ss_pred             ceEEEEEEEccccCC---CeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          345 EIIGIAQIALKELEP---GKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       345 ~~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                      ++||++.++++++..   +...+.|++|.          ..|++++.+.+.
T Consensus        81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~----------~~g~i~l~~~~~  121 (126)
T cd04043          81 DLCGRASLKLDPKRFGDDGLPREIWLDLD----------TQGRLLLRVSME  121 (126)
T ss_pred             ceEEEEEEecCHHHcCCCCCCceEEEEcC----------CCCeEEEEEEEe
Confidence            999999999997643   34578899983          268999998885

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.75  E-value=1e-17  Score=140.94  Aligned_cols=100  Identities=29%  Similarity=0.374  Sum_probs=89.5

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP  344 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d  344 (570)
                      .|.|+|++|++|+..+..+.+||||+++++   ++.++|+++.++.||+|||+|.|.+.++..+.|.|+|||++.    +
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~----~   73 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT----G   73 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC----C
Confidence            378999999999998888999999999997   578899999999999999999999998777899999999864    7


Q ss_pred             ceEEEEEEEccccCCCe--eeEEEEEeec
Q 008305          345 EIIGIAQIALKELEPGK--VKDVWLKLVK  371 (570)
Q Consensus       345 ~~lG~~~i~l~~l~~~~--~~~~w~~L~~  371 (570)
                      ++||++.++|.++....  ..+.|++|.+
T Consensus        74 ~~iG~~~i~l~~l~~~~~~~~~~w~~L~~  102 (105)
T cd04050          74 KSLGSLTLPLSELLKEPDLTLDQPFPLDN  102 (105)
T ss_pred             CccEEEEEEHHHhhccccceeeeeEecCC
Confidence            89999999999997643  5789999953

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.75  E-value=2.3e-17  Score=149.42  Aligned_cols=109  Identities=32%  Similarity=0.430  Sum_probs=93.5

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEee---cCCCcEEEEEEE
Q 008305          441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVE---DGQHEMLILDVY  514 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~---~~~~~~L~i~V~  514 (570)
                      ...|.|.|+|++|+||+..+..|.+||||++++..   +..++||++++++.||.|||+|.|.+.   +..+..|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            35799999999999999999889999999999843   235789999999999999999999853   224568999999


Q ss_pred             ECCCCCC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305          515 DHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT  549 (570)
Q Consensus       515 d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (570)
                      |++..++ ++||++.+++.++...+....|+.+.+.
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~  139 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE  139 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence            9998875 7999999999999877778899988653

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.75  E-value=2.6e-17  Score=143.44  Aligned_cols=104  Identities=27%  Similarity=0.470  Sum_probs=87.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecC---CCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDG---QHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~V~d~  516 (570)
                      .+.|.|+|++|+||+..+..+.+||||++++.+   ...++||++++++.||.|||+|.|.+...   ....|.|+|||+
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~   94 (125)
T cd04031          15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY   94 (125)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence            588999999999999998889999999999854   23577999999999999999999986432   457899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccCceEEEEEEec
Q 008305          517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHID  547 (570)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (570)
                      +..++ ++||++.++|++.. .....+||+|+
T Consensus        95 ~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~  125 (125)
T cd04031          95 DRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ  125 (125)
T ss_pred             CCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence            98765 69999999999943 33346899985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.74  E-value=1.5e-17  Score=145.00  Aligned_cols=111  Identities=30%  Similarity=0.438  Sum_probs=97.0

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEec---CCCCeEEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED---ASTQHLTVRVF  335 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~---~~~~~L~~~v~  335 (570)
                      +....+.|.|+|++|++|+..+..+.+||||++++.+.+.+..+|++++++.||+|||+|.|.+..   .....|.++||
T Consensus        11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~   90 (125)
T cd08386          11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL   90 (125)
T ss_pred             ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence            345678999999999999999888999999999997555667899999999999999999997532   23467999999


Q ss_pred             eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      |++.. +++++||++.++++++..+.....|+.|.
T Consensus        91 d~d~~-~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          91 DYDRF-SRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             eCCCC-cCCcEeeEEEEecccccCCCCcceEEecC
Confidence            99998 88999999999999998888889999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.74  E-value=6.6e-17  Score=140.93  Aligned_cols=105  Identities=32%  Similarity=0.532  Sum_probs=88.0

Q ss_pred             ceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEE-ee--cCCCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLI-GKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFV-VE--DGQHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~-v~--~~~~~~L~i~V~d~~  517 (570)
                      .+.|+|+|++|+||+..+.. |.+||||++++.. ...+.||++++++.||.|||+|.|. +.  +.....|.++|||++
T Consensus        15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d   94 (128)
T cd08388          15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD   94 (128)
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence            57999999999999998875 8899999999853 3456799999999999999999994 43  223457999999998


Q ss_pred             CCCC-ceeEEEEEeccccccC--ceEEEEEEec
Q 008305          518 TFGK-DKMGKCIMTLTRVMME--GEIQDSFHID  547 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~--~~~~~w~~L~  547 (570)
                      ..++ ++||++.++|+++...  ++...|.+|+
T Consensus        95 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          95 RYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             CCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            8765 6999999999998655  5678898875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.74  E-value=1.6e-17  Score=144.01  Aligned_cols=110  Identities=26%  Similarity=0.391  Sum_probs=96.9

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEE-Eec--CCCCeEEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFT-VED--ASTQHLTVRVF  335 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~-v~~--~~~~~L~~~v~  335 (570)
                      |....+.|.|+|++|+||+..+..|.+||||++.+.+...++++|+++++ .||+|||+|.|. +..  .....|.|+||
T Consensus        11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~   89 (124)
T cd08389          11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY   89 (124)
T ss_pred             ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence            44567899999999999999998889999999998877677889999887 999999999998 542  24568999999


Q ss_pred             eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      |++.. +++++||++.++|+++..+.....|++|.
T Consensus        90 ~~~~~-~~~~~lG~~~i~L~~l~~~~~~~~w~~L~  123 (124)
T cd08389          90 GVERM-RKERLIGEKVVPLSQLNLEGETTVWLTLE  123 (124)
T ss_pred             ECCCc-ccCceEEEEEEeccccCCCCCceEEEeCC
Confidence            99998 89999999999999998888899999984

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.74  E-value=1.8e-17  Score=139.65  Aligned_cols=94  Identities=20%  Similarity=0.331  Sum_probs=82.1

Q ss_pred             eEEEEEEEEecCCCCCCCC----CCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCC-CCeEEEEEEeCC
Q 008305          264 GTLDVKLVQAKELTNKDLI----GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAS-TQHLTVRVFDDE  338 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~----g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~-~~~L~~~v~d~d  338 (570)
                      |+|.|+|++|++|+..+..    +.+||||+++++   ++.++|+++++++||+|||+|.|.+.+.. ...|.|+|||++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~---~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d   77 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG---RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD   77 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC---CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence            7999999999999987632    358999999996   56789999999999999999999986543 357999999999


Q ss_pred             CCCCCCceEEEEEEEccccCCCe
Q 008305          339 GPMLAPEIIGIAQIALKELEPGK  361 (570)
Q Consensus       339 ~~~~~d~~lG~~~i~l~~l~~~~  361 (570)
                      .. ++|++||++.++|+++..+.
T Consensus        78 ~~-~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          78 KF-SFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CC-CCCcceEEEEEEHHHHHhhC
Confidence            98 99999999999999997653

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.73  E-value=2.3e-17  Score=143.38  Aligned_cols=109  Identities=20%  Similarity=0.440  Sum_probs=94.5

Q ss_pred             cCCceEEEEEEEEecCCCCCC-CCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305          260 LKPCGTLDVKLVQAKELTNKD-LIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV  334 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~-~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v  334 (570)
                      ....|.|.|+|++|+||+..+ ..+.+||||++++.+...  ..++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus        10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v   89 (123)
T cd08521          10 NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV   89 (123)
T ss_pred             eCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence            356789999999999999988 678999999999975433  468999999999999999999998643  346899999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL  369 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  369 (570)
                      ||++.. +++++||++.++++++..+.....||+|
T Consensus        90 ~d~~~~-~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          90 WHHDRF-GRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             EeCCCC-cCCceeeEEEEecccccccCCCccEEEC
Confidence            999988 8899999999999999877778899986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.73  E-value=4.3e-17  Score=141.55  Aligned_cols=112  Identities=28%  Similarity=0.484  Sum_probs=97.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ce
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DK  523 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~  523 (570)
                      .|+|+|++|++|+..+..+.+||||+++++  ....+|++++++.||.|||+|.|.+.......|.|+|||++..++ ++
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~   78 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN--GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDF   78 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEEC--CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcE
Confidence            389999999999999888899999999985  367899999999999999999999987667789999999998875 79


Q ss_pred             eEEEEEeccccccCceEEEEEEecC---------CCCeEEEEEE
Q 008305          524 MGKCIMTLTRVMMEGEIQDSFHIDG---------TKSGKLFLNL  558 (570)
Q Consensus       524 lG~~~i~l~~l~~~~~~~~w~~L~~---------~~~G~i~l~~  558 (570)
                      ||++.++++++........||.|..         ...|.|++.+
T Consensus        79 iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          79 LGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             eEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            9999999999987666789999964         2368888865

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.73  E-value=4.8e-17  Score=141.34  Aligned_cols=104  Identities=25%  Similarity=0.488  Sum_probs=89.8

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVD-LIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~  516 (570)
                      .+.|.|+|++|+||+..+ ..+.+||||++++...   ..+++|++++++.||.|||+|.|.+...  ....|.|+|||+
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   92 (123)
T cd08521          13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH   92 (123)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence            588999999999999988 7789999999998532   2468999999999999999999998642  356899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305          517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHI  546 (570)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L  546 (570)
                      +..++ ++||++.++|+++..+.....||+|
T Consensus        93 ~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          93 DRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             CCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            98766 6999999999999877778999986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.73  E-value=7.8e-17  Score=141.72  Aligned_cols=115  Identities=24%  Similarity=0.452  Sum_probs=99.7

Q ss_pred             ceEEEEEEEEeecCCCCCCC----------CCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEE
Q 008305          443 RGVLSITVIAAENLPKVDLI----------GKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILD  512 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~----------g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~  512 (570)
                      .|.|+|+|++|++|...+..          |.+||||++.+++ ....+|++++++.||.|||+|.|.+.  ....|.|.
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~   79 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-THIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELT   79 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-EEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEE
Confidence            58999999999999987752          6789999999963 34578999999999999999999996  35789999


Q ss_pred             EEECCCCCC-ceeEEEEEecccccc--CceEEEEEEecCCCCeEEEEEEEEEe
Q 008305          513 VYDHDTFGK-DKMGKCIMTLTRVMM--EGEIQDSFHIDGTKSGKLFLNLKWTP  562 (570)
Q Consensus       513 V~d~~~~~~-d~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~G~i~l~~~~~p  562 (570)
                      |||++..+. ++||++.++|+++..  ......|++|+  ++|+|+++++|+.
T Consensus        80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~  130 (132)
T cd04014          80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKG  130 (132)
T ss_pred             EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEec
Confidence            999987765 699999999999987  45578999998  4799999999975

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.73  E-value=5.7e-17  Score=140.83  Aligned_cols=111  Identities=29%  Similarity=0.360  Sum_probs=97.3

Q ss_pred             ccCCceEEEEEEEEecCCCCCC-CCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKD-LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVF  335 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~  335 (570)
                      +....+.|.|+|++|++|+..+ ..+.+||||++++.+...+.++|++++++.||+|||+|.|.+...  ....|.|+||
T Consensus         9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~   88 (123)
T cd08390           9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY   88 (123)
T ss_pred             ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence            3456789999999999999988 578899999999986556678999999999999999999998653  2357999999


Q ss_pred             eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      |++.. +.+++||++.++|+++........|++|.
T Consensus        89 d~~~~-~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          89 DVDRF-SRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             ECCcC-CCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            99998 88999999999999999888888999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.73  E-value=6.8e-17  Score=140.07  Aligned_cols=105  Identities=31%  Similarity=0.453  Sum_probs=90.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEE-ee--cCCCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFV-VE--DGQHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~-v~--~~~~~~L~i~V~d~~~  518 (570)
                      .+.|.|+|++|+||+..+..|.+||||++.+.. ...++||+++++ .||+|||+|.|. +.  +..+..|.++|||++.
T Consensus        15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~   93 (124)
T cd08389          15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER   93 (124)
T ss_pred             CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC
Confidence            578999999999999999888999999988743 346789999887 999999999998 54  2256789999999998


Q ss_pred             CCC-ceeEEEEEeccccccCceEEEEEEecC
Q 008305          519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDG  548 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~  548 (570)
                      .++ ++||++.++|+++........||+|++
T Consensus        94 ~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          94 MRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             cccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            865 799999999999988888899999873

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.72  E-value=7e-17  Score=140.53  Aligned_cols=118  Identities=32%  Similarity=0.556  Sum_probs=99.3

Q ss_pred             eEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-
Q 008305          444 GVLSITVIAAENLPKVD-LIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-  521 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-  521 (570)
                      |.|+|+|++|+||+..+ ..+.+||||++.+++....++|+++.++.||.|||.|.|.+. ...+.|.|+|||++..++ 
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCCCC
Confidence            78999999999999755 446789999999964236789999999999999999999987 457789999999988755 


Q ss_pred             ceeEEEEEeccccccCceEEE-EEEe--cCCCCeEEEEEEEEEe
Q 008305          522 DKMGKCIMTLTRVMMEGEIQD-SFHI--DGTKSGKLFLNLKWTP  562 (570)
Q Consensus       522 d~lG~~~i~l~~l~~~~~~~~-w~~L--~~~~~G~i~l~~~~~p  562 (570)
                      ++||++.+++.++..+..... ++.+  .++..|+|+++++|.|
T Consensus        81 ~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          81 KLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             ceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence            699999999999997776543 3333  4567899999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.72  E-value=1.6e-16  Score=138.29  Aligned_cols=118  Identities=19%  Similarity=0.353  Sum_probs=100.7

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCc
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKD  522 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d  522 (570)
                      ..+|+|+|++|++|+..+..|.+||||++.+++  ..++|++++++.||.|||.|.|.+.+. ...|.|+|||++..+++
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~   78 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG--ESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDE   78 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC--EEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence            378999999999999998889999999999853  678999999999999999999988753 67899999999988778


Q ss_pred             eeEEEEEeccccccCceEEEEEEec-------CCCCeEEEEEEEEEecCC
Q 008305          523 KMGKCIMTLTRVMMEGEIQDSFHID-------GTKSGKLFLNLKWTPQLV  565 (570)
Q Consensus       523 ~lG~~~i~l~~l~~~~~~~~w~~L~-------~~~~G~i~l~~~~~p~~~  565 (570)
                      +||++.+++.++.  ....++|+|.       +...|+|.+++...+..+
T Consensus        79 ~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~~  126 (126)
T cd04046          79 FLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDDLT  126 (126)
T ss_pred             ceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEccccC
Confidence            9999999998753  3445778883       335899999998877653

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.72  E-value=6.2e-17  Score=141.49  Aligned_cols=110  Identities=24%  Similarity=0.392  Sum_probs=95.1

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEE
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVF  335 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~  335 (570)
                      ....+.|.|+|++|+||+..+..+.+||||++++.+.+  ...++|++++++.||+|||+|.|.+...  ....|.+.||
T Consensus        12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~   91 (127)
T cd04030          12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK   91 (127)
T ss_pred             eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence            35678999999999999999988999999999998543  4578999999999999999999998532  3468999999


Q ss_pred             eCCCC-CCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305          336 DDEGP-MLAPEIIGIAQIALKELEPGKVKDVWLKL  369 (570)
Q Consensus       336 d~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  369 (570)
                      |++.. .+++++||++.++++++..+.....|++|
T Consensus        92 ~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  126 (127)
T cd04030          92 NSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL  126 (127)
T ss_pred             ECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence            99874 15799999999999999887778899987

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.72  E-value=1.1e-16  Score=141.03  Aligned_cols=116  Identities=27%  Similarity=0.520  Sum_probs=98.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-----CceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCC
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKA-----GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTF  519 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~  519 (570)
                      .|+|+|++|+||+..+..|.+||||++++.+.     ...++|++++++.||.|||+|.|.+.. ....|.|+|||++..
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCC
Confidence            37899999999999998899999999999643     125689999999999999999999864 356899999999988


Q ss_pred             CC-ceeEEEEEeccccccCce------EEEEEEecC-----CCCeEEEEEEEEE
Q 008305          520 GK-DKMGKCIMTLTRVMMEGE------IQDSFHIDG-----TKSGKLFLNLKWT  561 (570)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~------~~~w~~L~~-----~~~G~i~l~~~~~  561 (570)
                      ++ ++||++.++++++.....      ..+||+|++     ...|+|+++++|.
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence            65 699999999999986543      368999974     2489999999873

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.72  E-value=1e-16  Score=139.71  Aligned_cols=105  Identities=31%  Similarity=0.510  Sum_probs=90.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEee---cCCCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVE---DGQHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~---~~~~~~L~i~V~d~~~  518 (570)
                      .+.|.|+|++|+||+..+..+.+||||++++.. +..+.+|++++++.||.|||+|.|.+.   ......|.++|||++.
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~   94 (125)
T cd08386          15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR   94 (125)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence            478999999999999998889999999999842 345789999999999999999999752   2245679999999998


Q ss_pred             CCC-ceeEEEEEeccccccCceEEEEEEec
Q 008305          519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHID  547 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (570)
                      .++ ++||++.++++++........|+.|.
T Consensus        95 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          95 FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            866 69999999999998877789999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.72  E-value=9e-17  Score=138.87  Aligned_cols=112  Identities=24%  Similarity=0.482  Sum_probs=96.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-cee
Q 008305          446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DKM  524 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l  524 (570)
                      |.|+|++|++|+..+..|.+||||++.+++ ....||++++++.||.|||.|.|.+.+ ....|.|+|||++..+. ++|
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~i   79 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN-EVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDVI   79 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECC-EeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCEE
Confidence            789999999999999999999999999963 345799999999999999999999864 35789999999998866 799


Q ss_pred             EEEEEeccccccCc-eEEEEEEecCC-----CCeEEEEEEE
Q 008305          525 GKCIMTLTRVMMEG-EIQDSFHIDGT-----KSGKLFLNLK  559 (570)
Q Consensus       525 G~~~i~l~~l~~~~-~~~~w~~L~~~-----~~G~i~l~~~  559 (570)
                      |++.++++++.... ..++|++|++.     ..|+|+++++
T Consensus        80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            99999999887543 36899999763     3799998875

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.72  E-value=2e-16  Score=138.06  Aligned_cols=115  Identities=30%  Similarity=0.460  Sum_probs=98.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-CceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-c
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKA-GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-D  522 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d  522 (570)
                      .|+|+|++|++|+..+..+.+||||++.+.+. ...+||++++++.||.|||+|.|.+.......|.|+|||++..++ +
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            58999999999999998899999999998543 356899999999999999999999976556789999999998765 6


Q ss_pred             eeEEEEEeccccccC---ceEEEEEEecCCCCeEEEEEEEEE
Q 008305          523 KMGKCIMTLTRVMME---GEIQDSFHIDGTKSGKLFLNLKWT  561 (570)
Q Consensus       523 ~lG~~~i~l~~l~~~---~~~~~w~~L~~~~~G~i~l~~~~~  561 (570)
                      +||++.++|+++...   .....|++|.+  +|++++++.+.
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~  121 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSME  121 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEe
Confidence            999999999986533   24578999976  79999998875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=1.1e-16  Score=139.47  Aligned_cols=116  Identities=32%  Similarity=0.619  Sum_probs=97.1

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC----
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP----  340 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~----  340 (570)
                      .|+|+|++|++|+..+..|.+||||+++++   ...++|+++.++.||+|||+|.|.+..+ .+.|.|+|||+|..    
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~   77 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR   77 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence            689999999999999988999999999986   4578999999999999999999988654 46899999999852    


Q ss_pred             ------CCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEE
Q 008305          341 ------MLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLEL  389 (570)
Q Consensus       341 ------~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l  389 (570)
                            .+.+++||++.+++.++...  .+.|+.|.+..   .....+|+|.+++
T Consensus        78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~---~~~~~~G~i~~~~  127 (127)
T cd04027          78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT---DKSAVSGAIRLHI  127 (127)
T ss_pred             cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC---CCCcEeEEEEEEC
Confidence                  03689999999999988533  57899997542   3456799998864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.71  E-value=4.1e-17  Score=138.55  Aligned_cols=101  Identities=29%  Similarity=0.485  Sum_probs=88.8

Q ss_pred             EEEEEEEecCCCCCCC-CCCCCcEEEEEEEeCCCceEEeeeeCCCCCCee-ecEEEEEEecC--CCCeEEEEEEeCCCCC
Q 008305          266 LDVKLVQAKELTNKDL-IGKSDPFVVIFVRPLRDRMKTSKTINNELNPIW-NEHFEFTVEDA--STQHLTVRVFDDEGPM  341 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~-~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~W-ne~f~f~v~~~--~~~~L~~~v~d~d~~~  341 (570)
                      |.|+|++|++|+..+. .|.+||||+++++   ++.++|+++++++||.| ||+|.|.+...  ..+.|.|+|||++.. 
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~-   76 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTY-   76 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCC-
Confidence            5799999999998874 6889999999997   47889999999999999 99999998754  246899999999998 


Q ss_pred             CCCceEEEEEEEccccCC---CeeeEEEEEee
Q 008305          342 LAPEIIGIAQIALKELEP---GKVKDVWLKLV  370 (570)
Q Consensus       342 ~~d~~lG~~~i~l~~l~~---~~~~~~w~~L~  370 (570)
                      +++++||++.++++++..   +...+.||+|.
T Consensus        77 ~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          77 SANDAIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             CCCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            889999999999999976   34578899985

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=7.9e-17  Score=136.79  Aligned_cols=100  Identities=21%  Similarity=0.361  Sum_probs=85.0

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCC
Q 008305          264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLA  343 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~  343 (570)
                      |.|.|+|++|++|...+   ..||||+++++   +++.+|++.++ .||+|||+|.|.+.+... .|.++|||++..  .
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g---~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~-~L~v~V~dkd~~--~   71 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQ---NVKSTTIAVRG-SQPCWEQDFMFEINRLDL-GLVIELWNKGLI--W   71 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEEC---CEEeEeeECCC-CCCceeeEEEEEEcCCCC-EEEEEEEeCCCc--C
Confidence            68999999999997644   46999999997   57788998877 599999999999987554 599999999965  9


Q ss_pred             CceEEEEEEEccccCCCeee--EEEEEeeccc
Q 008305          344 PEIIGIAQIALKELEPGKVK--DVWLKLVKDV  373 (570)
Q Consensus       344 d~~lG~~~i~l~~l~~~~~~--~~w~~L~~~~  373 (570)
                      |++||++.++|+++..+...  .+||+|.+..
T Consensus        72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~  103 (127)
T cd08394          72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV  103 (127)
T ss_pred             CCceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence            99999999999999865544  8999997543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.71  E-value=6.3e-17  Score=141.03  Aligned_cols=107  Identities=27%  Similarity=0.458  Sum_probs=90.4

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecC---CCCeEEEEEE
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDA---STQHLTVRVF  335 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~---~~~~L~~~v~  335 (570)
                      ...|.|.|+|++|++|+..+..+.+||||++++.+..  ..+++|++++++.||+|||+|.|.+...   ....|.|+||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~   92 (125)
T cd04031          13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence            4578999999999999999888899999999997532  2467899999999999999999986432   3568999999


Q ss_pred             eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305          336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL  369 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  369 (570)
                      |++.. +.+++||++.++|++.. ......|++|
T Consensus        93 d~~~~-~~~~~iG~~~i~l~~~~-~~~~~~W~~L  124 (125)
T cd04031          93 DYDRD-GENDFLGEVVIDLADAL-LDDEPHWYPL  124 (125)
T ss_pred             eCCCC-CCCcEeeEEEEeccccc-ccCCcceEEC
Confidence            99998 88999999999999843 2335689987

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.71  E-value=5.6e-17  Score=141.30  Aligned_cols=115  Identities=25%  Similarity=0.528  Sum_probs=97.7

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeC-CCCCCeeecEEEEEEecCC----CCeEEEEEEeCCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTIN-NELNPIWNEHFEFTVEDAS----TQHLTVRVFDDEG  339 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~Wne~f~f~v~~~~----~~~L~~~v~d~d~  339 (570)
                      +|+|+|++|++|+..+..+.+||||+++++.  .+.++|++.. ++.||.|||+|.|.+.+..    ...|.|+|||++.
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~   78 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP   78 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence            4899999999999988889999999999973  3567888864 6899999999999997663    5789999999998


Q ss_pred             CCCCCceEEEEEEEccccCCCee-----eEEEEEeeccccccCCCcceeEEEE
Q 008305          340 PMLAPEIIGIAQIALKELEPGKV-----KDVWLKLVKDVKVQRDTKNRGQVHL  387 (570)
Q Consensus       340 ~~~~d~~lG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~G~l~l  387 (570)
                      . +.|++||++.+++.++..+..     ...|++|...     .++..|.|++
T Consensus        79 ~-~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-----~g~~~G~~~~  125 (125)
T cd04051          79 S-LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-----SGKPQGVLNF  125 (125)
T ss_pred             C-CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-----CCCcCeEEeC
Confidence            7 789999999999999986543     4789999743     5788898874

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.71  E-value=6.4e-17  Score=137.53  Aligned_cols=102  Identities=25%  Similarity=0.405  Sum_probs=89.7

Q ss_pred             CCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCceeEEEEEeccccccC-ce
Q 008305          461 LIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMME-GE  539 (570)
Q Consensus       461 ~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~-~~  539 (570)
                      .+|.+||||++.+++ ...++|++++++.||.|||.|.|.+.+.....|.|+|+|++..++++||++.++|+++... ..
T Consensus         9 ~~G~~dPYv~v~v~~-~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~   87 (111)
T cd04052           9 KTGLLSPYAELYLNG-KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV   87 (111)
T ss_pred             cCCCCCceEEEEECC-EEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence            468899999999963 3567999999999999999999999877778899999999988557999999999999654 34


Q ss_pred             EEEEEEecCCCCeEEEEEEEEEec
Q 008305          540 IQDSFHIDGTKSGKLFLNLKWTPQ  563 (570)
Q Consensus       540 ~~~w~~L~~~~~G~i~l~~~~~p~  563 (570)
                      ..+||+|.+.+.|+|+++++|+|+
T Consensus        88 ~~~w~~L~~~~~G~i~~~~~~~p~  111 (111)
T cd04052          88 GQQWFPLSGNGQGRIRISALWKPV  111 (111)
T ss_pred             cceeEECCCCCCCEEEEEEEEecC
Confidence            589999998889999999999985

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.71  E-value=8.2e-17  Score=143.32  Aligned_cols=104  Identities=36%  Similarity=0.647  Sum_probs=90.6

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--------------------------CceEEeeeeCCCCCCe
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--------------------------DRMKTSKTINNELNPI  313 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--------------------------~~~~~T~~~~~t~nP~  313 (570)
                      .++.+.|.|+|++|++|.+.|..|.+||||++.+.+..                          .+.++|+++.+++||.
T Consensus        24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~  103 (153)
T cd08676          24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV  103 (153)
T ss_pred             CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence            36899999999999999999989999999999996421                          1347899999999999


Q ss_pred             eecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305          314 WNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL  369 (570)
Q Consensus       314 Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  369 (570)
                      |||+|.|.+.+...+.|.|+|||++     +++||++.++++++.. ...+.||+|
T Consensus       104 WnE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         104 WNETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             cccEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            9999999998766789999999986     6899999999999984 346899976

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.71  E-value=2.4e-16  Score=136.90  Aligned_cols=106  Identities=27%  Similarity=0.391  Sum_probs=91.7

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVD-LIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~  518 (570)
                      .+.|.|+|++|+||+..+ ..+.+||||++++.. +...++|++++++.||+|||.|.|.+...  ....|.|+|||.+.
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~   92 (123)
T cd08390          13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR   92 (123)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence            578999999999999988 678899999999842 34567899999999999999999998643  34579999999988


Q ss_pred             CCC-ceeEEEEEeccccccCceEEEEEEecC
Q 008305          519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDG  548 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~  548 (570)
                      .++ ++||++.++|+++........|++|+.
T Consensus        93 ~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          93 FSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             CCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            765 699999999999998888889999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.71  E-value=3.2e-16  Score=135.32  Aligned_cols=112  Identities=34%  Similarity=0.603  Sum_probs=96.6

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-c
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-D  522 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d  522 (570)
                      |.|.|+|++|+||+..+..+.+||||++++++  ...+|++++++.||.|||+|.|.+.+ ....|.|+|||++..++ +
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~~~~~~-~~~~l~~~v~d~~~~~~~~   77 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN--ARLQTHTIYKTLNPEWNKIFTFPIKD-IHDVLEVTVYDEDKDKKPE   77 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC--EeeecceecCCcCCccCcEEEEEecC-cCCEEEEEEEECCCCCCCc
Confidence            67999999999999999889999999999953  56799999999999999999999864 35789999999988655 7


Q ss_pred             eeEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEEEE
Q 008305          523 KMGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNLKW  560 (570)
Q Consensus       523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~  560 (570)
                      +||++.+++.++..+.  .+||+|...     ..|+|.+++++
T Consensus        78 ~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          78 FLGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             eeeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence            9999999999986443  589999543     48999999886

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.71  E-value=1.8e-16  Score=135.99  Aligned_cols=113  Identities=35%  Similarity=0.563  Sum_probs=97.7

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE  345 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~  345 (570)
                      |+|+|++|++|+..+..+.+||||++++.  +.+.++|+++.++.||.|||+|.|.+.+...+.+.|+|||++.. ++++
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~-~~~~   77 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRG-GKDD   77 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCC-CCCC
Confidence            57999999999998888899999999996  34568999999999999999999999866667899999999988 8899


Q ss_pred             eEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEE
Q 008305          346 IIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVH  386 (570)
Q Consensus       346 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~  386 (570)
                      +||++.+++.++..+...+.|++|.+.     ++...|.+.
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~-----g~~~~~~~~  113 (115)
T cd04040          78 LLGSAYIDLSDLEPEETTELTLPLDGQ-----GGGKLGAVF  113 (115)
T ss_pred             ceEEEEEEHHHcCCCCcEEEEEECcCC-----CCccCceEE
Confidence            999999999999988888999999643     445556554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.70  E-value=3.1e-16  Score=139.33  Aligned_cols=121  Identities=18%  Similarity=0.290  Sum_probs=97.8

Q ss_pred             EEEEEEecC--CCCCCCCCCCCcEEEEEEE-e-CCCceEEeeeeCCCCCCeeecEEEEEEecCC--------CCeEEEEE
Q 008305          267 DVKLVQAKE--LTNKDLIGKSDPFVVIFVR-P-LRDRMKTSKTINNELNPIWNEHFEFTVEDAS--------TQHLTVRV  334 (570)
Q Consensus       267 ~V~V~~A~~--L~~~~~~g~~dpyv~v~l~-~-~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~--------~~~L~~~v  334 (570)
                      .++|..|++  |+..+..+.+||||++++. + ...++.+|+++++|+||+|||+|.|.+....        ...|.|+|
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V   84 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV   84 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence            455555555  7777777889999999973 2 3456899999999999999999999996432        45699999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                      ||++.+.++|++||++.++|+.+..+.....|++|..     ......|+|++++...
T Consensus        85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-----~~k~~Gg~l~v~ir~r  137 (155)
T cd08690          85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-----GRKATGGKLEVKVRLR  137 (155)
T ss_pred             EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-----CCCCcCCEEEEEEEec
Confidence            9999863579999999999999987766778999863     2456789999999986

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.70  E-value=3.3e-16  Score=137.35  Aligned_cols=102  Identities=26%  Similarity=0.306  Sum_probs=83.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-C--ceEeCcccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA-G--NRAKTRVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~--~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++... .  .++||++++++.||+|||+|.|.+..  ..+..|.|+|||++
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d   93 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST   93 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence            4789999999999999998899999999999532 2  36789999999999999999999863  35678999999999


Q ss_pred             CCCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHI  546 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L  546 (570)
                      ..++ ++||++.++...  .+...++|..+
T Consensus        94 ~~~~~~~iG~v~lg~~~--~g~~~~hW~~m  121 (136)
T cd08406          94 EDGKTPNVGHVIIGPAA--SGMGLSHWNQM  121 (136)
T ss_pred             CCCCCCeeEEEEECCCC--CChhHHHHHHH
Confidence            8766 799999998764  23334555544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>PLN03008 Phospholipase D delta

Probab=99.70  E-value=1.6e-16  Score=170.93  Aligned_cols=130  Identities=25%  Similarity=0.546  Sum_probs=111.3

Q ss_pred             CceEEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEEEeCCCc
Q 008305          262 PCGTLDVKLVQAKELTNKDL------------------------------------------IGKSDPFVVIFVRPLRDR  299 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~------------------------------------------~g~~dpyv~v~l~~~~~~  299 (570)
                      -.|.|.++|.+|++|+++|.                                          .+++||||++.++  +.+
T Consensus        12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg--~~r   89 (868)
T PLN03008         12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP--QAT   89 (868)
T ss_pred             eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC--Ccc
Confidence            47999999999999986321                                          2467999999996  345


Q ss_pred             eEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCC
Q 008305          300 MKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDT  379 (570)
Q Consensus       300 ~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~  379 (570)
                      ..||++++++.||+|||+|.|.+.++. ..|.|+|||+|.+ + +++||++.+|++++..+...+.|++|.+..  .+..
T Consensus        90 v~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~-g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~--~kp~  164 (868)
T PLN03008         90 LARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVF-G-AQIIGTAKIPVRDIASGERISGWFPVLGAS--GKPP  164 (868)
T ss_pred             eeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCcc-C-CceeEEEEEEHHHcCCCCceEEEEEccccC--CCCC
Confidence            679999999999999999999998865 4899999999999 4 689999999999999999999999998765  3455


Q ss_pred             cceeEEEEEEEEEeccCCC
Q 008305          380 KNRGQVHLELLYCPFGTES  398 (570)
Q Consensus       380 ~~~G~l~l~l~~~p~~~~~  398 (570)
                      +..|+|+++++|.|+....
T Consensus       165 k~~~kl~v~lqf~pv~~~~  183 (868)
T PLN03008        165 KAETAIFIDMKFTPFDQIH  183 (868)
T ss_pred             CCCcEEEEEEEEEEccccc
Confidence            6789999999999997654

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.70  E-value=1.7e-16  Score=140.88  Aligned_cols=102  Identities=25%  Similarity=0.397  Sum_probs=86.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEee---------------cCCC
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVE---------------DGQH  506 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~---------------~~~~  506 (570)
                      .|.|+|++|+||+.  .+|.+||||++++.+.   ..+++|+++++|.||+|||+|.|.+.               +...
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            37899999999998  5689999999999652   25679999999999999999999985               1123


Q ss_pred             cEEEEEEEECCCCCC-ceeEEEEEeccccccC-ceEEEEEEecC
Q 008305          507 EMLILDVYDHDTFGK-DKMGKCIMTLTRVMME-GEIQDSFHIDG  548 (570)
Q Consensus       507 ~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~-~~~~~w~~L~~  548 (570)
                      ..|.|+|||++..++ ++||++.|++.++... .....||+|+.
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~  122 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP  122 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence            579999999998755 6999999999999876 56789999954

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.69  E-value=9e-17  Score=140.76  Aligned_cols=91  Identities=29%  Similarity=0.461  Sum_probs=77.9

Q ss_pred             ceEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEE
Q 008305          443 RGVLSITVIAAENLPKVDL--IGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYD  515 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~--~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d  515 (570)
                      .+.|.|.|++|+||+..+.  .+.+||||++++....   .++||++++++.||+|||+|.|.+...  .+..|.|+|||
T Consensus        14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d   93 (138)
T cd08407          14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN   93 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence            5789999999999999873  3558999999986432   367999999999999999999999643  46789999999


Q ss_pred             CCCCCC-ceeEEEEEeccc
Q 008305          516 HDTFGK-DKMGKCIMTLTR  533 (570)
Q Consensus       516 ~~~~~~-d~lG~~~i~l~~  533 (570)
                      ++..++ ++||++.+++..
T Consensus        94 ~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          94 QDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             CCCCcCcceeceEEecCcC
Confidence            999876 799999999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.69  E-value=2.1e-16  Score=134.26  Aligned_cols=98  Identities=18%  Similarity=0.329  Sum_probs=84.0

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCce
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDK  523 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~  523 (570)
                      +.|.|.|++|++|+..+   ..||||++.++  +.+.+|++.++ .||.|||.|.|.+.+. +..|.|+|||++..++|+
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g--~~k~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~~DD~   74 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQ--NVKSTTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLIWDTL   74 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEEC--CEEeEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCcCCCc
Confidence            68999999999997644   45899999995  47889999877 5999999999999764 445999999999887899


Q ss_pred             eEEEEEeccccccCceE--EEEEEecC
Q 008305          524 MGKCIMTLTRVMMEGEI--QDSFHIDG  548 (570)
Q Consensus       524 lG~~~i~l~~l~~~~~~--~~w~~L~~  548 (570)
                      ||++.++|.++......  .+||+|+.
T Consensus        75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          75 VGTVWIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             eEEEEEEhHHcccCCCCCCCccEecCh
Confidence            99999999999866544  89999964

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.69  E-value=7.8e-17  Score=140.49  Aligned_cols=93  Identities=39%  Similarity=0.688  Sum_probs=85.0

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC
Q 008305          442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK  521 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~  521 (570)
                      ..|.|+|.|.+|.||...|..+++||||.+.++  +++.||+++++++||+|||.|+|.+.++ +..|.++|||+|.++.
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg--~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~   80 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG--NQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS   80 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCCCCeEEEEEC--CeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence            369999999999999999988999999999995  4888999999999999999999999875 7789999999999976


Q ss_pred             -ceeEEEEEeccccccC
Q 008305          522 -DKMGKCIMTLTRVMME  537 (570)
Q Consensus       522 -d~lG~~~i~l~~l~~~  537 (570)
                       |++|.++|+|..+...
T Consensus        81 dD~mG~A~I~l~p~~~~   97 (168)
T KOG1030|consen   81 DDFMGEATIPLKPLLEA   97 (168)
T ss_pred             ccccceeeeccHHHHHH
Confidence             7999999999988744

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.69  E-value=5.4e-16  Score=135.40  Aligned_cols=114  Identities=27%  Similarity=0.476  Sum_probs=98.9

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCCCC-ceeEE
Q 008305          450 VIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTFGK-DKMGK  526 (570)
Q Consensus       450 v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~~~-d~lG~  526 (570)
                      |++|+||+.  ..|.+||||++++++  .+++|++++++.||+|||.|.|.+...  ....|.|+|||++..++ ++||+
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~--~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~   77 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRG--VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGS   77 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECC--EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEE
Confidence            689999998  678899999999953  578999999999999999999999754  56789999999998765 79999


Q ss_pred             EEEeccccccCceEEEEEEecCC----CCeEEEEEEEEEecCCCC
Q 008305          527 CIMTLTRVMMEGEIQDSFHIDGT----KSGKLFLNLKWTPQLVLR  567 (570)
Q Consensus       527 ~~i~l~~l~~~~~~~~w~~L~~~----~~G~i~l~~~~~p~~~~~  567 (570)
                      +.++++++..+.....|++|.+.    ..|+|+++++|.|..-..
T Consensus        78 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~  122 (127)
T cd08373          78 ATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDGAV  122 (127)
T ss_pred             EEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCCcc
Confidence            99999999988888999999532    368999999999986543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.69  E-value=1.8e-16  Score=137.79  Aligned_cols=104  Identities=39%  Similarity=0.588  Sum_probs=92.5

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCC-CCCCeeecEEEEEEecC---CCCeEEEEEEeCCC
Q 008305          264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINN-ELNPIWNEHFEFTVEDA---STQHLTVRVFDDEG  339 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~nP~Wne~f~f~v~~~---~~~~L~~~v~d~d~  339 (570)
                      |.|.|+|++|++|+..+..+.+||||+++++   .+.++|++..+ +.||.|||+|.|.+..+   ..+.|.|+|||.+.
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   77 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR---TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN   77 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEEC---CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence            7899999999999998888899999999986   55678888764 89999999999999876   34689999999999


Q ss_pred             CCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305          340 PMLAPEIIGIAQIALKELEPGKVKDVWLKLVK  371 (570)
Q Consensus       340 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  371 (570)
                      . ++|++||++.+++.++..+...+.|+.|.+
T Consensus        78 ~-~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p  108 (124)
T cd04049          78 F-SDDDFIGEATIHLKGLFEEGVEPGTAELVP  108 (124)
T ss_pred             C-CCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence            8 889999999999999988777889999854

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.69  E-value=1.5e-16  Score=144.08  Aligned_cols=109  Identities=23%  Similarity=0.391  Sum_probs=94.5

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEe---cCCCCeEEEEEE
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVE---DASTQHLTVRVF  335 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~---~~~~~~L~~~v~  335 (570)
                      .+.|.|.|+|++|++|+..+..+.+||||++++.+..  ..+++|++++++.||.|||+|.|.+.   +.....|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            4789999999999999999988999999999997532  35789999999999999999999853   223457999999


Q ss_pred             eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      |++.. +++++||++.++++++........|+.+.
T Consensus       104 d~d~~-~~d~~lG~v~i~l~~~~~~~~~~~w~~~~  137 (162)
T cd04020         104 DHDKL-SSNDFLGGVRLGLGTGKSYGQAVDWMDST  137 (162)
T ss_pred             eCCCC-CCCceEEEEEEeCCccccCCCccccccCC
Confidence            99998 88999999999999998766778898874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.69  E-value=3.5e-16  Score=135.63  Aligned_cols=110  Identities=30%  Similarity=0.546  Sum_probs=93.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC---c
Q 008305          446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK---D  522 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~---d  522 (570)
                      |+|+|++|++|+..+..+.+||||++++++ ...++|++++++.||.|||.|+|.+..  ...|.|+|||++..++   +
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~   78 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG-GQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQG   78 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECC-ccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCc
Confidence            789999999999999889999999999963 567899999999999999999999964  6799999999988753   5


Q ss_pred             eeEEEEEeccccccCce-EEEEEEecCCC-------CeEEEEEE
Q 008305          523 KMGKCIMTLTRVMMEGE-IQDSFHIDGTK-------SGKLFLNL  558 (570)
Q Consensus       523 ~lG~~~i~l~~l~~~~~-~~~w~~L~~~~-------~G~i~l~~  558 (570)
                      +||++.++++++..... ...||+|....       .|+|.+++
T Consensus        79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence            99999999999986553 37799994322       67777765

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.69  E-value=1.9e-16  Score=139.55  Aligned_cols=106  Identities=22%  Similarity=0.380  Sum_probs=92.7

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEe-CCCceEEeeeeCCCCCCeeecEEEEEEecC---------------CCCe
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRP-LRDRMKTSKTINNELNPIWNEHFEFTVEDA---------------STQH  329 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~-~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~---------------~~~~  329 (570)
                      |+|+|++|++|+.. ..|.+||||++++.. ...+.++|+++.++.||.|||+|.|.+...               ..+.
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999988 678999999999983 224578999999999999999999998765               4568


Q ss_pred             EEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccc
Q 008305          330 LTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDV  373 (570)
Q Consensus       330 L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  373 (570)
                      |.|+|||++.. +++++||++.+++.++........|++|.+..
T Consensus        80 l~i~V~d~~~~-~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          80 LRVELWHASMV-SGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEcCCcC-cCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            99999999998 89999999999999998777789999997654

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.69  E-value=2.2e-16  Score=135.98  Aligned_cols=103  Identities=28%  Similarity=0.410  Sum_probs=91.3

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCC
Q 008305          264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLA  343 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~  343 (570)
                      |+|+|+|++|++|+..+..+.+||||+++++  +...++|+++.++.||.|||+|.|.+... .+.|.|+|||++.. ++
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~-~~   76 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKV-GK   76 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCC-CC
Confidence            7899999999999999888999999999996  23568899999999999999999988765 46899999999998 88


Q ss_pred             CceEEEEEEEccccCCCeeeEEEEEeec
Q 008305          344 PEIIGIAQIALKELEPGKVKDVWLKLVK  371 (570)
Q Consensus       344 d~~lG~~~i~l~~l~~~~~~~~w~~L~~  371 (570)
                      |++||++.+++.++..+ ..+.||.+.+
T Consensus        77 d~~IG~~~~~l~~l~~~-~~~~~~~~~~  103 (120)
T cd04045          77 DRSLGSVEINVSDLIKK-NEDGKYVEYD  103 (120)
T ss_pred             CCeeeEEEEeHHHhhCC-CCCceEEecC
Confidence            99999999999999877 4677888864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.69  E-value=1.8e-16  Score=134.83  Aligned_cols=102  Identities=30%  Similarity=0.545  Sum_probs=87.0

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC---CCcEEEEEEEECCC
Q 008305          444 GVLSITVIAAENLPKVDLI-GKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG---QHEMLILDVYDHDT  518 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~V~d~~~  518 (570)
                      |.|+|+|++|+||+..+.. +.+||||++++.. +...++|++++++.||.|||.|.|.+...   ....|.|+|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999999887 8999999999853 24568999999999999999999988643   35689999999998


Q ss_pred             CCC-ceeEEEEEeccccccCceEEEEEEecC
Q 008305          519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDG  548 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~  548 (570)
                      .++ ++||++.+++.++...   .+|+++..
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~---~~~~~~~~  108 (111)
T cd04041          81 FTADDRLGRVEIDLKELIED---RNWMGRRE  108 (111)
T ss_pred             CCCCCcceEEEEEHHHHhcC---CCCCcccc
Confidence            865 7999999999999844   35777654

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.68  E-value=1.2e-15  Score=133.57  Aligned_cols=118  Identities=22%  Similarity=0.386  Sum_probs=96.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC----------CceEEeeeeCCCCCCee-ecEEEEEEecCCCCeEEEE
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR----------DRMKTSKTINNELNPIW-NEHFEFTVEDASTQHLTVR  333 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~----------~~~~~T~~~~~t~nP~W-ne~f~f~v~~~~~~~L~~~  333 (570)
                      +..|++++|++|+ ++..|++||||++.+.+.+          .+.++|+++++++||+| ||+|.|.+.  ..+.|.++
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence            4678999999998 6778999999999997543          24789999999999999 999999985  34689999


Q ss_pred             EEeCCCCCCC---CceEEEEEEEccccCCCe---eeEEEEEeeccccccCCCcceeEEEEEE
Q 008305          334 VFDDEGPMLA---PEIIGIAQIALKELEPGK---VKDVWLKLVKDVKVQRDTKNRGQVHLEL  389 (570)
Q Consensus       334 v~d~d~~~~~---d~~lG~~~i~l~~l~~~~---~~~~w~~L~~~~~~~~~~~~~G~l~l~l  389 (570)
                      |||++.. ++   +++||++.++++++..+.   ....|++|.+..   ..+...|+|.+.+
T Consensus        79 V~D~~~~-~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~---~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFAK-SRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT---PTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCCC-CCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC---CCCcEEEEEEEEe
Confidence            9998754 33   799999999999997542   366789987553   3567789998865

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.68  E-value=7e-16  Score=136.06  Aligned_cols=117  Identities=23%  Similarity=0.422  Sum_probs=96.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecC---------CCcEEEEEEEE
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG---------QHEMLILDVYD  515 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---------~~~~L~i~V~d  515 (570)
                      .|+|+|++|++|+..+..|.+||||++.++  ..++||++++++.||.|||.|.|.+...         ....|.|+|||
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~--~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d   79 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFL--NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD   79 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEEC--CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence            689999999999999999999999999995  4678999999999999999999975322         12579999999


Q ss_pred             CCCCCC-ceeEEEEE-ecccccc---CceEEEEEEecC--CCCeEEEEEEEEEec
Q 008305          516 HDTFGK-DKMGKCIM-TLTRVMM---EGEIQDSFHIDG--TKSGKLFLNLKWTPQ  563 (570)
Q Consensus       516 ~~~~~~-d~lG~~~i-~l~~l~~---~~~~~~w~~L~~--~~~G~i~l~~~~~p~  563 (570)
                      ++..++ ++||++.+ ++..+..   .....+||+|..  ...|+|.+++++.+.
T Consensus        80 ~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~  134 (135)
T cd04017          80 QDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV  134 (135)
T ss_pred             CcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence            998866 69999987 4444432   234579999963  458999999999875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.68  E-value=4.6e-16  Score=136.68  Aligned_cols=110  Identities=29%  Similarity=0.514  Sum_probs=95.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecC-CCcEEEEEEEECCCC
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDG-QHEMLILDVYDHDTF  519 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~V~d~~~~  519 (570)
                      +.|+|+|++|+||+..+..+.+||||++.+.+   ...+++|++++++.||.|||+|.|.+... ....|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            78999999999999988888999999999963   23578999999999999999999998654 356899999999877


Q ss_pred             CC-ceeEEEEEeccccccCceEEEEEEecCCCCeEE
Q 008305          520 GK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKL  554 (570)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i  554 (570)
                      ++ ++||++.++++++... ....||+|.+...|+.
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~  127 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY  127 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence            65 6999999999999754 6688999998888864

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.68  E-value=3.7e-16  Score=138.38  Aligned_cols=93  Identities=30%  Similarity=0.574  Sum_probs=85.2

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCC
Q 008305          263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPML  342 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~  342 (570)
                      .|.|+|+|++|++|+..+. +.+||||+++++   ++.++|++++++.||+|||+|.|.+.++ .+.+.|+|||++.+ +
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g---~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~-~   74 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG---NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTF-S   74 (145)
T ss_pred             CeEEEEEEEeeECCCCCCC-CCcCcEEEEEEC---CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCC-C
Confidence            4899999999999999887 889999999996   6789999999999999999999999876 57899999999998 8


Q ss_pred             CCceEEEEEEEccccCCCe
Q 008305          343 APEIIGIAQIALKELEPGK  361 (570)
Q Consensus       343 ~d~~lG~~~i~l~~l~~~~  361 (570)
                      .|++||.+.+++.++....
T Consensus        75 ~dd~iG~a~i~l~~l~~~~   93 (145)
T cd04038          75 KDDSMGEAEIDLEPLVEAA   93 (145)
T ss_pred             CCCEEEEEEEEHHHhhhhh
Confidence            9999999999999987543

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.68  E-value=4e-16  Score=132.76  Aligned_cols=98  Identities=21%  Similarity=0.391  Sum_probs=85.5

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCC----CCeEEEEEEeCCCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAS----TQHLTVRVFDDEGP  340 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~----~~~L~~~v~d~d~~  340 (570)
                      .|+|+|++|++|.    .|.+||||+++++   +++++|++++++.||.|||+|.|.+..+.    ...|.|+|||++..
T Consensus         5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~   77 (111)
T cd04011           5 QVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL   77 (111)
T ss_pred             EEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence            6899999999998    4789999999998   56788999999999999999999986432    46899999999998


Q ss_pred             CCCCceEEEEEEEccccCCC---eeeEEEEEee
Q 008305          341 MLAPEIIGIAQIALKELEPG---KVKDVWLKLV  370 (570)
Q Consensus       341 ~~~d~~lG~~~i~l~~l~~~---~~~~~w~~L~  370 (570)
                       ++|++||++.++++++..+   .....|++|.
T Consensus        78 -~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~  109 (111)
T cd04011          78 -RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT  109 (111)
T ss_pred             -ccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence             8899999999999999655   4467899985

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.68  E-value=3.4e-16  Score=135.06  Aligned_cols=94  Identities=23%  Similarity=0.419  Sum_probs=82.7

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEec-CCCCeEEEEEEeCCC
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED-ASTQHLTVRVFDDEG  339 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~-~~~~~L~~~v~d~d~  339 (570)
                      ...|.|.|+|++|++|+. +..+.+||||+++++   ++.++|++++++.||+|||+|.|.... ...+.|.|+|||++.
T Consensus        25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~  100 (127)
T cd04032          25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN  100 (127)
T ss_pred             CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence            578999999999999984 667889999999996   458899999999999999999997533 356789999999999


Q ss_pred             CCCCCceEEEEEEEccccCC
Q 008305          340 PMLAPEIIGIAQIALKELEP  359 (570)
Q Consensus       340 ~~~~d~~lG~~~i~l~~l~~  359 (570)
                      . ++|++||++.+++.....
T Consensus       101 ~-s~dd~IG~~~i~l~~~~~  119 (127)
T cd04032         101 G-WDDDLLGTCSVVPEAGVH  119 (127)
T ss_pred             C-CCCCeeEEEEEEecCCce
Confidence            8 899999999999997653

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.68  E-value=4.9e-16  Score=136.25  Aligned_cols=109  Identities=23%  Similarity=0.322  Sum_probs=90.4

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRV  334 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v  334 (570)
                      |.+..+.|.|+|++|+||+..+..|.+||||++++.+.+.+  +++|+++++++||+|||+|.|.+..  .....|.|+|
T Consensus        10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V   89 (136)
T cd08406          10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV   89 (136)
T ss_pred             EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence            44567899999999999999988899999999999865443  5689999999999999999999864  3456799999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      ||++.. +++++||++.+....  .+...+.|..+.
T Consensus        90 ~~~d~~-~~~~~iG~v~lg~~~--~g~~~~hW~~ml  122 (136)
T cd08406          90 AESTED-GKTPNVGHVIIGPAA--SGMGLSHWNQML  122 (136)
T ss_pred             EeCCCC-CCCCeeEEEEECCCC--CChhHHHHHHHH
Confidence            999998 899999999997654  344455666654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.67  E-value=4.4e-16  Score=138.49  Aligned_cols=103  Identities=19%  Similarity=0.267  Sum_probs=86.7

Q ss_pred             EEEEEEEEecCCCCCCCCC--------------CCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC-CCCe
Q 008305          265 TLDVKLVQAKELTNKDLIG--------------KSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA-STQH  329 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g--------------~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~-~~~~  329 (570)
                      .|.|+|++|++|+.+|..+              .+||||++.++   ++..+|++++++.||+|||+|.|.+..+ ..+.
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~   77 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCER   77 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence            3789999999999987443              68999999997   5567999999999999999999997544 3468


Q ss_pred             EEEEEEeCCCCCCCCceEEEEEEEccccCCCee-------eEEEEEeec
Q 008305          330 LTVRVFDDEGPMLAPEIIGIAQIALKELEPGKV-------KDVWLKLVK  371 (570)
Q Consensus       330 L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~-------~~~w~~L~~  371 (570)
                      |.|+|||+|.. ++|++||++.+++.++.....       ...|+.+..
T Consensus        78 l~~~v~D~d~~-~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg  125 (151)
T cd04018          78 IKIQIRDWDRV-GNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG  125 (151)
T ss_pred             EEEEEEECCCC-CCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence            99999999998 899999999999999876542       347777754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.67  E-value=3.7e-16  Score=132.62  Aligned_cols=101  Identities=37%  Similarity=0.624  Sum_probs=87.9

Q ss_pred             EEEEEEEeecCCCCCC-CCCCCcEEEEEEeCCCceEeCcccCCCCCCee-eeEEEEEeecC--CCcEEEEEEEECCCCCC
Q 008305          446 LSITVIAAENLPKVDL-IGKADPFVVLQLKKAGNRAKTRVAHDTLNPVW-NQTFDFVVEDG--QHEMLILDVYDHDTFGK  521 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~-~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w-~e~f~f~v~~~--~~~~L~i~V~d~~~~~~  521 (570)
                      |.|+|++|+||+..+. .|.+||||++++++  .++||++++++.||.| ||.|.|.+...  ....|.|+|||++..++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~--~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~   78 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS--TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSA   78 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECC--eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCC
Confidence            5799999999998874 68899999999964  7889999999999999 99999999653  34689999999998876


Q ss_pred             -ceeEEEEEeccccccC---ceEEEEEEecC
Q 008305          522 -DKMGKCIMTLTRVMME---GEIQDSFHIDG  548 (570)
Q Consensus       522 -d~lG~~~i~l~~l~~~---~~~~~w~~L~~  548 (570)
                       ++||++.+++.++...   .....||+|.+
T Consensus        79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             CCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence             6999999999999873   45789999864

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.67  E-value=1.8e-16  Score=139.69  Aligned_cols=110  Identities=25%  Similarity=0.431  Sum_probs=92.7

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV  334 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v  334 (570)
                      |....|.|.|+|++|++|+..+..|.+||||++++.+..  ...++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus         8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V   87 (133)
T cd08384           8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV   87 (133)
T ss_pred             EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence            345678999999999999999988999999999998533  2467999999999999999999998643  346899999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK  371 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  371 (570)
                      ||++.. +.+++||++.+++..  .+.....|+++.+
T Consensus        88 ~d~d~~-~~~~~lG~~~i~l~~--~~~~~~~W~~~l~  121 (133)
T cd08384          88 WDKDIG-KSNDYIGGLQLGINA--KGERLRHWLDCLK  121 (133)
T ss_pred             EeCCCC-CCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence            999988 889999999999986  3444578888754

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.66  E-value=2.8e-16  Score=138.83  Aligned_cols=105  Identities=28%  Similarity=0.412  Sum_probs=87.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++..+.   .++||++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d   93 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD   93 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence            47899999999999999988999999999985432   357899999999999999999998632  3557999999999


Q ss_pred             CCCC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT  549 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (570)
                      ..++ ++||++.+++..  ......+|++|...
T Consensus        94 ~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~  124 (136)
T cd08404          94 RVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP  124 (136)
T ss_pred             CCCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence            8866 699999999998  34456778877543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.66  E-value=3.4e-16  Score=139.36  Aligned_cols=102  Identities=37%  Similarity=0.543  Sum_probs=89.5

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---------------------------ceEeCcccCCCCCCee
Q 008305          441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---------------------------NRAKTRVAHDTLNPVW  493 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---------------------------~~~kT~v~~~t~nP~w  493 (570)
                      +..+.|.|+|++|+||+..+..|.+||||++.+....                           ..++|++++++.||.|
T Consensus        25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W  104 (153)
T cd08676          25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW  104 (153)
T ss_pred             CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence            5689999999999999999999999999999985311                           2478999999999999


Q ss_pred             eeEEEEEeecCCCcEEEEEEEECCCCCCceeEEEEEeccccccCceEEEEEEe
Q 008305          494 NQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHI  546 (570)
Q Consensus       494 ~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L  546 (570)
                      ||+|.|.+.......|.|+|||++   +++||++.++++++.. ...++||+|
T Consensus       105 nE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         105 NETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             ccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            999999997666788999999997   6799999999999984 457899986

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.66  E-value=2.1e-15  Score=133.95  Aligned_cols=118  Identities=22%  Similarity=0.380  Sum_probs=95.6

Q ss_pred             EEEEEEeec--CCCCCCCCCCCcEEEEEEe---CCCceEeCcccCCCCCCeeeeEEEEEeecC--------CCcEEEEEE
Q 008305          447 SITVIAAEN--LPKVDLIGKADPFVVLQLK---KAGNRAKTRVAHDTLNPVWNQTFDFVVEDG--------QHEMLILDV  513 (570)
Q Consensus       447 ~V~v~~a~~--L~~~~~~g~~dpyv~v~~~---~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--------~~~~L~i~V  513 (570)
                      .++|..|++  |+..+..+.+||||++++.   .+..+.||+++++|.||+|||+|.|.+...        ....|.|+|
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V   84 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV   84 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence            445555555  7777777889999999972   245689999999999999999999999533        245799999


Q ss_pred             EECCCC--CCceeEEEEEeccccccCceEEEEEEec-CC--CCeEEEEEEEEEecC
Q 008305          514 YDHDTF--GKDKMGKCIMTLTRVMMEGEIQDSFHID-GT--KSGKLFLNLKWTPQL  564 (570)
Q Consensus       514 ~d~~~~--~~d~lG~~~i~l~~l~~~~~~~~w~~L~-~~--~~G~i~l~~~~~p~~  564 (570)
                      ||++.+  ++++||++.++|+.+..+.....|++|- +.  .+|+|+++++.+..-
T Consensus        85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p~  140 (155)
T cd08690          85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREPL  140 (155)
T ss_pred             EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCCC
Confidence            999986  3579999999999998888888899975 43  379999999987654

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.66  E-value=5.4e-16  Score=133.72  Aligned_cols=103  Identities=15%  Similarity=0.253  Sum_probs=80.7

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCC-CCeeeeEEEEEeecC-CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTL-NPVWNQTFDFVVEDG-QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~-nP~w~e~f~f~v~~~-~~~~L~i~V~d~~  517 (570)
                      .+.|+|.|++|+||++.+..+.+||||+|++-.   ...++||+++++|. ||+|||+|.|.+... .+-.|.|+|||++
T Consensus        13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~   92 (135)
T cd08692          13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRS   92 (135)
T ss_pred             CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCC
Confidence            688999999999999876667789999999843   22478999999995 699999999999743 2346889999998


Q ss_pred             CCCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHI  546 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L  546 (570)
                      ..++ ++||++.++.++.. ....++|.+.
T Consensus        93 ~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m  121 (135)
T cd08692          93 SVRRKHFLGQVWISSDSSS-SEAVEQWKDT  121 (135)
T ss_pred             CCcCCceEEEEEECCccCC-chhhhhHHHH
Confidence            7655 79999999997632 2233455443

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.66  E-value=1.2e-15  Score=133.00  Aligned_cols=109  Identities=29%  Similarity=0.577  Sum_probs=91.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCC-----
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTF-----  519 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~-----  519 (570)
                      .|+|+|++|++|+..+..|.+||||+++++  ...++|++++++.||.|||.|.|.+..+ ...|.|+|||++..     
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~   78 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG--KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRL   78 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEEC--CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCccccc
Confidence            689999999999999988999999999995  3678999999999999999999998643 56899999998752     


Q ss_pred             -------CCceeEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEE
Q 008305          520 -------GKDKMGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNL  558 (570)
Q Consensus       520 -------~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~  558 (570)
                             .+++||++.+++.++.  +...+||.|+..     .+|+|.+++
T Consensus        79 ~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          79 KQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             ceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence                   3479999999999874  345799999753     378888764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.66  E-value=8.2e-16  Score=129.52  Aligned_cols=93  Identities=24%  Similarity=0.404  Sum_probs=79.9

Q ss_pred             eEEEEEEEEeecCCCCCCC----CCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecC-CCcEEEEEEEECCC
Q 008305          444 GVLSITVIAAENLPKVDLI----GKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG-QHEMLILDVYDHDT  518 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~----g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~V~d~~~  518 (570)
                      |+|.|+|++|++|+..+..    +.+||||+++++  ..++||++++++.||+|||.|.|.+.+. ....|.|+|||++.
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~--~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~   78 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG--RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK   78 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC--CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC
Confidence            6899999999999987632    358999999995  4678999999999999999999998654 34579999999998


Q ss_pred             CCC-ceeEEEEEeccccccCc
Q 008305          519 FGK-DKMGKCIMTLTRVMMEG  538 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~  538 (570)
                      .++ ++||++.++|+++..+.
T Consensus        79 ~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          79 FSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCCCcceEEEEEEHHHHHhhC
Confidence            866 69999999999998654

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.66  E-value=2.5e-16  Score=137.98  Aligned_cols=109  Identities=21%  Similarity=0.422  Sum_probs=89.4

Q ss_pred             ccCCceEEEEEEEEecCCCCCCC--CCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDL--IGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFTVEDA--STQHLTV  332 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~--~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~  332 (570)
                      |.+..|.|.|+|++|+||...+.  .+.+||||++++.+.+.+  +++|+++++++||+|||+|.|.+...  ....|.|
T Consensus        10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~   89 (138)
T cd08407          10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL   89 (138)
T ss_pred             EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence            45678899999999999999873  345999999999975433  67899999999999999999998643  3567999


Q ss_pred             EEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          333 RVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       333 ~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      +|||+|.. +++++||++.+++..  .+...+.|..+.
T Consensus        90 ~V~d~d~~-~~~d~iG~v~lg~~~--~g~~~~hW~~ml  124 (138)
T cd08407          90 EVLNQDSP-GQSLPLGRCSLGLHT--SGTERQHWEEML  124 (138)
T ss_pred             EEEeCCCC-cCcceeceEEecCcC--CCcHHHHHHHHH
Confidence            99999998 999999999999975  344445665554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.65  E-value=2.4e-15  Score=132.19  Aligned_cols=126  Identities=14%  Similarity=0.294  Sum_probs=100.8

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP  340 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~  340 (570)
                      +-...|.|.|++|++|+.++     +|||.+.++  +....||+++.++.||.|+|.|.|..... ...+.|.||+.+..
T Consensus         8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld--~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~   79 (146)
T cd04013           8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLD--KTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDK   79 (146)
T ss_pred             EEEEEEEEEEEEccCCCCcC-----CceEEEEEC--CEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCc
Confidence            34568999999999998754     799999998  34457999999999999999999986644 35799999865533


Q ss_pred             C---CCCceEEEEEEEccccCCCeeeEEEEEeecccccc-----CCCcceeEEEEEEEEEec
Q 008305          341 M---LAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQ-----RDTKNRGQVHLELLYCPF  394 (570)
Q Consensus       341 ~---~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-----~~~~~~G~l~l~l~~~p~  394 (570)
                      .   .++++||.+.||+.++..+...+.||+|.......     ......+.|+++++|.+.
T Consensus        80 ~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~  141 (146)
T cd04013          80 KKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST  141 (146)
T ss_pred             cccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence            1   26799999999999999998899999998654321     012456899999999864

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.65  E-value=8.3e-16  Score=130.67  Aligned_cols=101  Identities=26%  Similarity=0.489  Sum_probs=86.5

Q ss_pred             CCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCC-
Q 008305          281 LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEP-  359 (570)
Q Consensus       281 ~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~-  359 (570)
                      ..|.+||||+++++  +...++|+++.++.||+|||+|.|.+.+...+.|.|+|||++..  +|++||++.++|+++.. 
T Consensus         9 ~~G~~dPYv~v~v~--~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~--~d~~iG~~~v~L~~l~~~   84 (111)
T cd04052           9 KTGLLSPYAELYLN--GKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR--HDPVLGSVSISLNDLIDA   84 (111)
T ss_pred             cCCCCCceEEEEEC--CEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC--CCCeEEEEEecHHHHHhh
Confidence            46889999999996  23467999999999999999999999877677899999999987  78999999999999854 


Q ss_pred             CeeeEEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305          360 GKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCP  393 (570)
Q Consensus       360 ~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  393 (570)
                      +...+.|++|.+        ...|+|++++.|.|
T Consensus        85 ~~~~~~w~~L~~--------~~~G~i~~~~~~~p  110 (111)
T cd04052          85 TSVGQQWFPLSG--------NGQGRIRISALWKP  110 (111)
T ss_pred             hhccceeEECCC--------CCCCEEEEEEEEec
Confidence            344679999942        46799999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.65  E-value=2.3e-15  Score=132.73  Aligned_cols=110  Identities=17%  Similarity=0.269  Sum_probs=90.8

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc---eEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR---MKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVR  333 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~  333 (570)
                      |....|.|.|+|++|+||+..+..|.+||||++++.+..++   +++|++++++.||+|||+|.|.+..  .....|.|.
T Consensus        10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~   89 (138)
T cd08408          10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS   89 (138)
T ss_pred             EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence            45678999999999999999998899999999999864332   5689999999999999999999864  345689999


Q ss_pred             EEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          334 VFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       334 v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      |||++.. +++++||++.+++.....+ ..+.|..+.
T Consensus        90 V~~~~~~-~~~~~iG~v~l~~~~~~~~-~~~hW~~~l  124 (138)
T cd08408          90 VYNKRKM-KRKEMIGWFSLGLNSSGEE-EEEHWNEMK  124 (138)
T ss_pred             EEECCCC-CCCcEEEEEEECCcCCCch-HHHHHHHHH
Confidence            9999998 8999999999988754321 234676664

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.65  E-value=2.4e-15  Score=132.22  Aligned_cols=94  Identities=30%  Similarity=0.493  Sum_probs=82.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-----CceEeCcccCCCCCCeeeeEEEEEeecC----CCcEEEEEE
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA-----GNRAKTRVAHDTLNPVWNQTFDFVVEDG----QHEMLILDV  513 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~~kT~v~~~t~nP~w~e~f~f~v~~~----~~~~L~i~V  513 (570)
                      .+.|+|+|++|++|+..+..|.+||||++++.+.     ..++||+++++|.||+|||+|.|.+...    ....|.|+|
T Consensus        15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V   94 (133)
T cd04009          15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV   94 (133)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence            4789999999999999888899999999998632     3578999999999999999999998642    356899999


Q ss_pred             EECCCCCC-ceeEEEEEecccccc
Q 008305          514 YDHDTFGK-DKMGKCIMTLTRVMM  536 (570)
Q Consensus       514 ~d~~~~~~-d~lG~~~i~l~~l~~  536 (570)
                      ||++..++ ++||++.++|+++..
T Consensus        95 ~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          95 KDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EecCCCCCCcEeEEEEEeHHHCCc
Confidence            99998875 799999999999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.64  E-value=1.4e-15  Score=133.76  Aligned_cols=98  Identities=26%  Similarity=0.338  Sum_probs=85.9

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC----CceEEeeeeCCCCCCeeecEEEEEEecC----CCCeEEE
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR----DRMKTSKTINNELNPIWNEHFEFTVEDA----STQHLTV  332 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~nP~Wne~f~f~v~~~----~~~~L~~  332 (570)
                      ...+.|.|+|++|++|+..+..|.+||||++++.+..    ...++|++++++.||+|||+|.|.+...    ....|.|
T Consensus        13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~   92 (133)
T cd04009          13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF   92 (133)
T ss_pred             CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence            4567999999999999998888999999999997533    3478999999999999999999998652    3458999


Q ss_pred             EEEeCCCCCCCCceEEEEEEEccccCC
Q 008305          333 RVFDDEGPMLAPEIIGIAQIALKELEP  359 (570)
Q Consensus       333 ~v~d~d~~~~~d~~lG~~~i~l~~l~~  359 (570)
                      +|||++.. +++++||++.++|+++..
T Consensus        93 ~V~d~d~~-~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          93 TVKDYDLL-GSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EEEecCCC-CCCcEeEEEEEeHHHCCc
Confidence            99999998 889999999999999974

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.64  E-value=2.9e-15  Score=132.41  Aligned_cols=102  Identities=28%  Similarity=0.443  Sum_probs=83.9

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++..+   ..++||++++++.||.|||.|.|.+..  .....|.|+|||++
T Consensus        14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~   93 (136)
T cd08405          14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD   93 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence            5889999999999999888899999999998422   236789999999999999999999852  23568999999999


Q ss_pred             CCCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHI  546 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L  546 (570)
                      ..++ ++||++.+++.+.  +....+|+++
T Consensus        94 ~~~~~~~lG~~~i~~~~~--~~~~~~w~~~  121 (136)
T cd08405          94 RLSRNDLIGKIYLGWKSG--GLELKHWKDM  121 (136)
T ss_pred             CCCCCcEeEEEEECCccC--CchHHHHHHH
Confidence            8866 6999999999875  3334455554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.64  E-value=8.3e-16  Score=133.32  Aligned_cols=120  Identities=25%  Similarity=0.290  Sum_probs=92.5

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP  344 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d  344 (570)
                      +|+|+|++|++|+..+..|.+||||+++++.. ....+|++++++.||+|||+|.|.+..+..+.|.|+|||++.. ++|
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~-~~d   78 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLL-GSD   78 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCC-CCC
Confidence            47899999999999998899999999999732 2235788888999999999999998777778999999999998 899


Q ss_pred             ceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305          345 EIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCP  393 (570)
Q Consensus       345 ~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  393 (570)
                      ++||++.+++++..... ..+|.-+.      ......|.++....+.|
T Consensus        79 d~iG~~~i~l~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~  120 (124)
T cd04037          79 DLIGETVIDLEDRFFSK-HRATCGLP------PTYEESGPNQWRDSLKP  120 (124)
T ss_pred             ceeEEEEEeecccccch-HHHhccCC------CcccccCceecCcccCc
Confidence            99999999999876421 12222221      12235666666655543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.64  E-value=2e-15  Score=134.28  Aligned_cols=107  Identities=23%  Similarity=0.407  Sum_probs=89.7

Q ss_pred             EEEEEEEeecCCCCCCC--------------CCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecC-CCcEEE
Q 008305          446 LSITVIAAENLPKVDLI--------------GKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG-QHEMLI  510 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~--------------g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~  510 (570)
                      |.|+|++|++|+.++..              +.+||||++.+++  .+.||++++++.||+|||+|.|.+..+ ..+.|.
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g--~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~   79 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG--QKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK   79 (151)
T ss_pred             eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC--EeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence            78999999999998744              3689999999964  567999999999999999999997543 456899


Q ss_pred             EEEEECCCCCC-ceeEEEEEeccccccCce-------EEEEEEecCCCCeEE
Q 008305          511 LDVYDHDTFGK-DKMGKCIMTLTRVMMEGE-------IQDSFHIDGTKSGKL  554 (570)
Q Consensus       511 i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~-------~~~w~~L~~~~~G~i  554 (570)
                      |+|||++..++ |+||++.+++.++...+.       ...|+.|.+...+..
T Consensus        80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~  131 (151)
T cd04018          80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYS  131 (151)
T ss_pred             EEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccccc
Confidence            99999998855 799999999999886653       268999988766543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.64  E-value=6.8e-16  Score=136.23  Aligned_cols=104  Identities=20%  Similarity=0.282  Sum_probs=83.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+ .+.+||||++++....   .++||++++++.||+|||+|.|.+..  .....|.|+|||.+
T Consensus        14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~   92 (137)
T cd08409          14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG   92 (137)
T ss_pred             CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence            478999999999999888 7889999999986432   36789999999999999999999953  24568999999999


Q ss_pred             CCCC-ceeEEEEEeccccccCceEEEEEEec
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHID  547 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (570)
                      ..++ ++||++.++......+....+|..+-
T Consensus        93 ~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~  123 (137)
T cd08409          93 GVRKSKLLGRVVLGPFMYARGKELEHWNDML  123 (137)
T ss_pred             CCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence            7765 69999999976544444445555543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.64  E-value=5.1e-15  Score=128.56  Aligned_cols=117  Identities=24%  Similarity=0.369  Sum_probs=94.2

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP  344 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d  344 (570)
                      .|.|+|++|+ |...+..+.+||||+++++.  ...++|+++.++.||+|||+|.|.+..  .+.|.|+|||++.. +.|
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~--~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~-~~~   76 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDG--QPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTL-KAD   76 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECC--cccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCC-CCC
Confidence            6899999998 55555578899999999972  237899999999999999999999863  46899999999998 899


Q ss_pred             ceEEEEEEEccccCCCee-----eEEEEEeeccccccCCCcceeEEEEEE
Q 008305          345 EIIGIAQIALKELEPGKV-----KDVWLKLVKDVKVQRDTKNRGQVHLEL  389 (570)
Q Consensus       345 ~~lG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~G~l~l~l  389 (570)
                      ++||++.++++++.....     ...|+++....  ...++..|+|++++
T Consensus        77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~~~~~  124 (125)
T cd04021          77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN--KGSSVKVGELTVIL  124 (125)
T ss_pred             cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC--CCcceeeeeEEEEe
Confidence            999999999999975322     23588886432  11447789998875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.64  E-value=3.5e-15  Score=129.72  Aligned_cols=105  Identities=33%  Similarity=0.603  Sum_probs=92.1

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCC-CCCCeeeeEEEEEeecC---CCcEEEEEEEECCCC
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHD-TLNPVWNQTFDFVVEDG---QHEMLILDVYDHDTF  519 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~---~~~~L~i~V~d~~~~  519 (570)
                      |.|.|+|++|+||+..+..+.+||||+++++  ...++|++.++ +.||.|||.|.|.+..+   ....|.|+|||.+..
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~   78 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR--TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF   78 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEEC--CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC
Confidence            6799999999999998888899999999995  35678888775 89999999999999765   357899999999887


Q ss_pred             CC-ceeEEEEEeccccccCceEEEEEEecCCC
Q 008305          520 GK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK  550 (570)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~  550 (570)
                      ++ ++||++.++++++..++..+.|+.|....
T Consensus        79 ~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~  110 (124)
T cd04049          79 SDDDFIGEATIHLKGLFEEGVEPGTAELVPAK  110 (124)
T ss_pred             CCCCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence            55 69999999999999888889999998764

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.64  E-value=6.3e-16  Score=136.62  Aligned_cols=107  Identities=23%  Similarity=0.398  Sum_probs=90.3

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEe
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFD  336 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d  336 (570)
                      ...+.|.|+|++|++|+..+..|.+||||++++.+.+.  ...+|++++++.||.|||+|.|.+...  ....|.|+|||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d   91 (136)
T cd08404          12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence            46789999999999999999889999999999975332  257899999999999999999998532  34578999999


Q ss_pred             CCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          337 DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       337 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      ++.. +++++||++.+++..  .+.....|+++.
T Consensus        92 ~d~~-~~~~~iG~~~~~~~~--~~~~~~~w~~l~  122 (136)
T cd08404          92 SDRV-TKNEVIGRLVLGPKA--SGSGGHHWKEVC  122 (136)
T ss_pred             CCCC-CCCccEEEEEECCcC--CCchHHHHHHHH
Confidence            9998 899999999999998  344567788774

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.63  E-value=1e-15  Score=135.33  Aligned_cols=105  Identities=32%  Similarity=0.533  Sum_probs=85.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|++|+..+..|.+||||++++...   ..+++|++++++.||.|||.|.|.+...  ....|.|+|||++
T Consensus        14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~   93 (136)
T cd08402          14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD   93 (136)
T ss_pred             CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence            5889999999999999998899999999998532   2467899999999999999999998632  2357999999999


Q ss_pred             CCCC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT  549 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (570)
                      ..++ ++||++.+++...  +....+|+++-..
T Consensus        94 ~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~  124 (136)
T cd08402          94 RIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS  124 (136)
T ss_pred             CCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence            8876 6999999999863  3344566665443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.63  E-value=8.9e-16  Score=135.49  Aligned_cols=107  Identities=31%  Similarity=0.510  Sum_probs=90.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecCC--CcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDGQ--HEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+..+.+||||++++....   .+++|++++++.||.|||+|.|.+....  ...|.|+|||.+
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~   92 (134)
T cd00276          13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD   92 (134)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence            47899999999999998888899999999996432   3679999999999999999999986542  578999999998


Q ss_pred             CCCC-ceeEEEEEeccccccCceEEEEEEecCCCC
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKS  551 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~  551 (570)
                      ..++ ++||++.+++++  .+...++|++|...+.
T Consensus        93 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~  125 (134)
T cd00276          93 SVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPR  125 (134)
T ss_pred             CCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCC
Confidence            8655 699999999999  5556688998876543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.63  E-value=3.7e-15  Score=128.30  Aligned_cols=109  Identities=23%  Similarity=0.446  Sum_probs=93.9

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-c
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-D  522 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d  522 (570)
                      |.|.|+|++|++|+..+..+.+||||++++++ ...++|++++++.||.|||.|.|.+... .+.|.|+|||++..++ +
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~   78 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG-IVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDR   78 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECC-EEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence            67999999999999998889999999999953 3678999999999999999999998754 5789999999998876 5


Q ss_pred             eeEEEEEeccccccCceEEEEEEecCCCCeEEE
Q 008305          523 KMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLF  555 (570)
Q Consensus       523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~  555 (570)
                      +||++.+++.++..+ ....||.|.+...+++.
T Consensus        79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~  110 (120)
T cd04045          79 SLGSVEINVSDLIKK-NEDGKYVEYDDEEERLK  110 (120)
T ss_pred             eeeEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence            999999999999876 55788888776666554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.63  E-value=2.3e-15  Score=131.04  Aligned_cols=111  Identities=26%  Similarity=0.444  Sum_probs=93.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccC-CCCCCeeeeEEEEEeecCC----CcEEEEEEEECCCC
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAH-DTLNPVWNQTFDFVVEDGQ----HEMLILDVYDHDTF  519 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~----~~~L~i~V~d~~~~  519 (570)
                      .|+|+|++|++|+..+..+.+||||++++++ ..+++|++.. ++.||.|||.|.|.+....    ...|.|+|||++..
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~   79 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP-SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPS   79 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC-CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCC
Confidence            3789999999999998889999999999964 4677898875 5899999999999997653    67899999999886


Q ss_pred             CC-ceeEEEEEeccccccCceE-----EEEEEec---CCCCeEEEE
Q 008305          520 GK-DKMGKCIMTLTRVMMEGEI-----QDSFHID---GTKSGKLFL  556 (570)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~-----~~w~~L~---~~~~G~i~l  556 (570)
                      +. ++||++.+++.++..+...     ..||+|.   ++..|.|++
T Consensus        80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence            55 6999999999999976643     6899996   345788764

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.63  E-value=5.6e-15  Score=130.19  Aligned_cols=105  Identities=26%  Similarity=0.423  Sum_probs=83.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|++|+..+..|.+||||++++..+.   .+++|+++++|.||.|||+|.|.+...  ....|.|+|||++
T Consensus        13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d   92 (135)
T cd08410          13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHN   92 (135)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            47899999999999999988999999999984322   457999999999999999999998532  3457999999999


Q ss_pred             CCCC-ceeEEEEEeccccccCceEEEEEEecC
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDG  548 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~  548 (570)
                      ..++ ++||++.|+...... ....+|+.+..
T Consensus        93 ~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~  123 (135)
T cd08410          93 VKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN  123 (135)
T ss_pred             CCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence            8765 699999877644322 12456666543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.63  E-value=5e-15  Score=126.98  Aligned_cols=109  Identities=39%  Similarity=0.636  Sum_probs=94.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-cee
Q 008305          446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DKM  524 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l  524 (570)
                      |+|+|++|++|+..+..+.+||||++.+++ ...++|+++.++.||.|||+|.|.+.......+.|+|||++..++ ++|
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNG-EKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL   79 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECC-CcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence            578999999999988888999999999964 456899999999999999999999976667889999999988765 699


Q ss_pred             EEEEEeccccccCceEEEEEEecCCC---CeEEE
Q 008305          525 GKCIMTLTRVMMEGEIQDSFHIDGTK---SGKLF  555 (570)
Q Consensus       525 G~~~i~l~~l~~~~~~~~w~~L~~~~---~G~i~  555 (570)
                      |++.+++.++..+.....|++|.+.+   .|.+.
T Consensus        80 G~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~  113 (115)
T cd04040          80 GSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVF  113 (115)
T ss_pred             EEEEEEHHHcCCCCcEEEEEECcCCCCccCceEE
Confidence            99999999998888889999997542   45543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.63  E-value=2.9e-16  Score=153.90  Aligned_cols=110  Identities=32%  Similarity=0.567  Sum_probs=94.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEe---CCCceEeCcccCCCCCCeeeeEEEEEeecC-CCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLK---KAGNRAKTRVAHDTLNPVWNQTFDFVVEDG-QHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~V~d~~~  518 (570)
                      ...|+|+|.+|+||.++|.+|.+||||++.+-   .+..++||++++.++||+|||+|+|.+... .+..|.|+|||+++
T Consensus       179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr  258 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR  258 (683)
T ss_pred             CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence            47899999999999999999999999999983   234678999999999999999999999643 56689999999998


Q ss_pred             CCC-ceeEEEEEeccccccCceEEEEEEecCCCCeE
Q 008305          519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGK  553 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~  553 (570)
                      .++ |++|..++.++++..+ ..+.||.|-.+..|+
T Consensus       259 TsRNDFMGslSFgisEl~K~-p~~GWyKlLsqeEGE  293 (683)
T KOG0696|consen  259 TSRNDFMGSLSFGISELQKA-PVDGWYKLLSQEEGE  293 (683)
T ss_pred             cccccccceecccHHHHhhc-chhhHHHHhhhhcCc
Confidence            876 8999999999998654 457899986655554

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.63  E-value=7.1e-15  Score=129.58  Aligned_cols=103  Identities=23%  Similarity=0.365  Sum_probs=84.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-C---ceEeCcccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA-G---NRAKTRVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~---~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~  516 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++... .   .++||++++++.||+|||+|.|.+..  ..+..|.|+|||.
T Consensus        14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~   93 (138)
T cd08408          14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK   93 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence            5899999999999999998899999999999532 1   35799999999999999999999963  3567899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305          517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHI  546 (570)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L  546 (570)
                      +..++ ++||++.+++...-. .+..+|+.+
T Consensus        94 ~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~  123 (138)
T cd08408          94 RKMKRKEMIGWFSLGLNSSGE-EEEEHWNEM  123 (138)
T ss_pred             CCCCCCcEEEEEEECCcCCCc-hHHHHHHHH
Confidence            87765 699999999875421 223456554

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.63  E-value=2.5e-15  Score=129.80  Aligned_cols=100  Identities=27%  Similarity=0.419  Sum_probs=86.8

Q ss_pred             EEEecCCCCCCCCCCCCcEEEEEEEeCC----CceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCC----CC
Q 008305          270 LVQAKELTNKDLIGKSDPFVVIFVRPLR----DRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEG----PM  341 (570)
Q Consensus       270 V~~A~~L~~~~~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~----~~  341 (570)
                      .++|++|+..+..|.+||||++++.+..    ...++|++++++.||+|||+|.|.+.....+.|.|+|||++.    . 
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~-   84 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL-   84 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC-
Confidence            4789999999988999999999998542    125899999999999999999998765556789999999997    6 


Q ss_pred             CCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          342 LAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       342 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      +++++||++.++++++..+.....|++|.
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~  113 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK  113 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence            89999999999999999877778888883

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.63  E-value=2.4e-15  Score=132.91  Aligned_cols=110  Identities=23%  Similarity=0.390  Sum_probs=90.6

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRV  334 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v  334 (570)
                      +.+..|.|.|+|++|++|+..+..|.+||||++++.+.+  ...++|++++++.||+|||+|.|.+..  .....|.|+|
T Consensus        10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v   89 (136)
T cd08405          10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence            345678999999999999998888999999999996432  235789999999999999999998753  2346899999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK  371 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  371 (570)
                      ||++.. +++++||++.+++.+.  +...+.|+++..
T Consensus        90 ~d~~~~-~~~~~lG~~~i~~~~~--~~~~~~w~~~~~  123 (136)
T cd08405          90 MDKDRL-SRNDLIGKIYLGWKSG--GLELKHWKDMLS  123 (136)
T ss_pred             EECCCC-CCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence            999998 8899999999999886  334556766643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.62  E-value=3.5e-15  Score=131.94  Aligned_cols=110  Identities=28%  Similarity=0.414  Sum_probs=90.8

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV  334 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v  334 (570)
                      |.+..|.|.|+|++|++|+..+..|.+||||++++.+.+.  ..++|++++++.||.|||+|.|.+...  ....|.|+|
T Consensus        10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v   89 (136)
T cd08402          10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            4567899999999999999999889999999999975332  357899999999999999999998643  234799999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK  371 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  371 (570)
                      ||++.. ++|++||++.+++...  +.....|+++..
T Consensus        90 ~d~~~~-~~~~~iG~~~i~~~~~--~~~~~~W~~~~~  123 (136)
T cd08402          90 LDYDRI-GKNDPIGKVVLGCNAT--GAELRHWSDMLA  123 (136)
T ss_pred             EeCCCC-CCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence            999998 8999999999999864  333456766643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.62  E-value=1.8e-15  Score=130.45  Aligned_cols=111  Identities=11%  Similarity=0.193  Sum_probs=88.4

Q ss_pred             cccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCC-CCeeecEEEEEEecCCC-CeEEEE
Q 008305          258 LELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNEL-NPIWNEHFEFTVEDAST-QHLTVR  333 (570)
Q Consensus       258 ~~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~-nP~Wne~f~f~v~~~~~-~~L~~~  333 (570)
                      .|.+..|.|.|+|++|+||++.+..+.+||||++++...+++  +++|+++++|+ ||+|||+|.|.+..... -.|.++
T Consensus         8 ~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~   87 (135)
T cd08692           8 CFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIK   87 (135)
T ss_pred             eecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEE
Confidence            456788999999999999998755567799999999865444  67899999995 69999999999975432 368899


Q ss_pred             EEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          334 VFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       334 v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      |||++.. +++++||++.+...+.. +...+.|.+..
T Consensus        88 v~d~~~~-~~n~~IG~v~lG~~~~~-~~~~~hW~~m~  122 (135)
T cd08692          88 LYSRSSV-RRKHFLGQVWISSDSSS-SEAVEQWKDTI  122 (135)
T ss_pred             EEeCCCC-cCCceEEEEEECCccCC-chhhhhHHHHH
Confidence            9999988 89999999999997642 22345666553

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.62  E-value=6.3e-15  Score=126.75  Aligned_cols=114  Identities=30%  Similarity=0.520  Sum_probs=88.7

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCC--CCeEEEEEEeCCCCCCC
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAS--TQHLTVRVFDDEGPMLA  343 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~--~~~L~~~v~d~d~~~~~  343 (570)
                      |.|+|++|++|+..   +.+||||+++++  +.+.++|+++++ .||.|||+|.|.+....  ...|.+.+||.+.. ..
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~-~~   74 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSK-DR   74 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccC-CC
Confidence            78999999999876   789999999997  234578999988 99999999999987543  24678888888766 55


Q ss_pred             CceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          344 PEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       344 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      +..+|.  +++..+..+...+.|++|.+..   ......|+|++++.|
T Consensus        75 ~~~~g~--v~l~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~  117 (117)
T cd08383          75 DIVIGK--VALSKLDLGQGKDEWFPLTPVD---PDSEVQGSVRLRARY  117 (117)
T ss_pred             eeEEEE--EEecCcCCCCcceeEEECccCC---CCCCcCceEEEEEEC
Confidence            666665  5555565577789999996542   234678999999876

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.62  E-value=1.6e-16  Score=155.64  Aligned_cols=110  Identities=30%  Similarity=0.524  Sum_probs=96.2

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecCC-CCeEEEEEEeCC
Q 008305          262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDAS-TQHLTVRVFDDE  338 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~~-~~~L~~~v~d~d  338 (570)
                      ....|.|+|.+|+||.++|.+|.+||||++.+-|.++  .+++|++++.++||+|||+|.|.+...+ ...|.++|||+|
T Consensus       178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD  257 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD  257 (683)
T ss_pred             cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence            4557999999999999999999999999999986543  3678999999999999999999986443 357999999999


Q ss_pred             CCCCCCceEEEEEEEccccCCCeeeEEEEEeeccc
Q 008305          339 GPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDV  373 (570)
Q Consensus       339 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  373 (570)
                      +. +++||+|..++.+++|.... .+.||.|..+.
T Consensus       258 rT-sRNDFMGslSFgisEl~K~p-~~GWyKlLsqe  290 (683)
T KOG0696|consen  258 RT-SRNDFMGSLSFGISELQKAP-VDGWYKLLSQE  290 (683)
T ss_pred             cc-ccccccceecccHHHHhhcc-hhhHHHHhhhh
Confidence            99 99999999999999998765 68899997653

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.62  E-value=5.1e-16  Score=136.87  Aligned_cols=110  Identities=25%  Similarity=0.446  Sum_probs=90.0

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV  334 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v  334 (570)
                      +.+..|.|+|+|++|++|+..+..|.+||||++++.+.+.  ..++|++++++.||.|||+|.|.+...  ....|.|+|
T Consensus         9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v   88 (134)
T cd08403           9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV   88 (134)
T ss_pred             EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            4467899999999999999999889999999999975432  367899999999999999999987532  334699999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK  371 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  371 (570)
                      ||++.. +++++||++.+++...  +.....|+++..
T Consensus        89 ~d~~~~-~~~~~IG~~~l~~~~~--~~~~~~w~~~~~  122 (134)
T cd08403          89 VDYDRV-GHNELIGVCRVGPNAD--GQGREHWNEMLA  122 (134)
T ss_pred             EECCCC-CCCceeEEEEECCCCC--CchHHHHHHHHH
Confidence            999998 8899999999998733  333456776643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.62  E-value=8.4e-15  Score=127.12  Aligned_cols=102  Identities=31%  Similarity=0.463  Sum_probs=84.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEe-e--cCCCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVV-E--DGQHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v-~--~~~~~~L~i~V~d~  516 (570)
                      .+.|+|+|++|++|+..+..+.+||||++.+..+   ..+++|++++++.||.|||.|.|.. .  +.....+.|+|||+
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~   93 (123)
T cd04035          14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE   93 (123)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence            4789999999999999888889999999998532   3478999999999999999999963 2  22356899999999


Q ss_pred             CCCCCceeEEEEEeccccccCceEEEEE
Q 008305          517 DTFGKDKMGKCIMTLTRVMMEGEIQDSF  544 (570)
Q Consensus       517 ~~~~~d~lG~~~i~l~~l~~~~~~~~w~  544 (570)
                      +..++++||++.++++++..+.....|+
T Consensus        94 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~  121 (123)
T cd04035          94 DRFGNDFLGETRIPLKKLKPNQTKQFNI  121 (123)
T ss_pred             CCcCCeeEEEEEEEcccCCCCcceEeec
Confidence            8875579999999999998766544444

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.61  E-value=9.7e-15  Score=129.32  Aligned_cols=91  Identities=38%  Similarity=0.682  Sum_probs=82.1

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-c
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-D  522 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d  522 (570)
                      |.|+|+|++|+||+..+. +.+||||+++++  .+.++|++++++.||+|||.|.|.+.++ ...|.|+|||++.+++ +
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g--~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd   77 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG--NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDD   77 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEEC--CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence            789999999999998887 889999999995  4788999999999999999999999865 7789999999998866 7


Q ss_pred             eeEEEEEeccccccCc
Q 008305          523 KMGKCIMTLTRVMMEG  538 (570)
Q Consensus       523 ~lG~~~i~l~~l~~~~  538 (570)
                      +||++.+++.++....
T Consensus        78 ~iG~a~i~l~~l~~~~   93 (145)
T cd04038          78 SMGEAEIDLEPLVEAA   93 (145)
T ss_pred             EEEEEEEEHHHhhhhh
Confidence            9999999999987543

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.61  E-value=5.3e-15  Score=129.92  Aligned_cols=107  Identities=32%  Similarity=0.539  Sum_probs=93.1

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecC-CCCeEEEEEEeCCCC
Q 008305          264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDA-STQHLTVRVFDDEGP  340 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~-~~~~L~~~v~d~d~~  340 (570)
                      |.|+|+|++|++|+..+..+.+||||++.+.+.+  ...++|+++.++.||.|||+|.|.+... ..+.|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            7999999999999998888899999999997432  3578999999999999999999998654 346899999999987


Q ss_pred             CCCCceEEEEEEEccccCCCeeeEEEEEeecc
Q 008305          341 MLAPEIIGIAQIALKELEPGKVKDVWLKLVKD  372 (570)
Q Consensus       341 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  372 (570)
                       +.+++||++.++++++... ..+.|++|.++
T Consensus        93 -~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~  122 (131)
T cd04026          93 -TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ  122 (131)
T ss_pred             -CCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence             8899999999999999865 57889999654

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.61  E-value=1.5e-14  Score=121.30  Aligned_cols=82  Identities=23%  Similarity=0.457  Sum_probs=70.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeC------
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDD------  337 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~------  337 (570)
                      |.|+|++|+||+     +.+||||++++.+.+  ....+|+++.+|+||+|||+|.|.+.  ..+.|.+.|||+      
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence            679999999995     558999999997543  34689999999999999999999986  367999999998      


Q ss_pred             -CCCCCCCceEEEEEEEcc
Q 008305          338 -EGPMLAPEIIGIAQIALK  355 (570)
Q Consensus       338 -d~~~~~d~~lG~~~i~l~  355 (570)
                       |.. +.|+++|++.+.|.
T Consensus        74 ~d~~-~~d~~~G~g~i~Ld   91 (118)
T cd08686          74 LDGE-GTDAIMGKGQIQLD   91 (118)
T ss_pred             cccc-CcccEEEEEEEEEC
Confidence             455 78999988888875

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.61  E-value=1.9e-15  Score=133.10  Aligned_cols=104  Identities=28%  Similarity=0.402  Sum_probs=86.9

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++...   ..+++|++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d   91 (133)
T cd08384          12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD   91 (133)
T ss_pred             CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence            5899999999999999998899999999999632   3467999999999999999999998643  3568999999998


Q ss_pred             CCCC-ceeEEEEEeccccccCceEEEEEEecC
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDG  548 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~  548 (570)
                      ..++ ++||++.+++..  .+....+|+++..
T Consensus        92 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~  121 (133)
T cd08384          92 IGKSNDYIGGLQLGINA--KGERLRHWLDCLK  121 (133)
T ss_pred             CCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence            8765 799999999986  3334567877643

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.61  E-value=5.9e-15  Score=125.56  Aligned_cols=100  Identities=20%  Similarity=0.318  Sum_probs=85.9

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCC----CcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ----HEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~----~~~L~i~V~d~~~  518 (570)
                      ...|+|+|++|++|+    .|.+||||++++++  ++++|++++++.||.|||.|.|.+..+.    ...|.|+|||++.
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~   76 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG--QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS   76 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEECC--EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence            468999999999998    47899999999964  6779999999999999999999985432    4689999999998


Q ss_pred             CCC-ceeEEEEEeccccccCc---eEEEEEEecC
Q 008305          519 FGK-DKMGKCIMTLTRVMMEG---EIQDSFHIDG  548 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~---~~~~w~~L~~  548 (570)
                      .+. ++||++.++|+++..+.   .+.+|++|.+
T Consensus        77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             cccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            765 79999999999997653   3689999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.61  E-value=1e-14  Score=128.31  Aligned_cols=118  Identities=18%  Similarity=0.278  Sum_probs=97.4

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECC-CC-
Q 008305          442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHD-TF-  519 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~-~~-  519 (570)
                      ....|.|.|.+|++|+.++     +|||++.+++ ....||+++.++.||.|+|.|.|.+... -..+.|.|++.+ .. 
T Consensus         9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~-~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~   81 (146)
T cd04013           9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDK-TLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKK   81 (146)
T ss_pred             EEEEEEEEEEEccCCCCcC-----CceEEEEECC-EEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccc
Confidence            3578999999999998754     7999999974 4567999999999999999999987543 467999997543 22 


Q ss_pred             ---CCceeEEEEEeccccccCceEEEEEEecCC-------------CCeEEEEEEEEEecCCC
Q 008305          520 ---GKDKMGKCIMTLTRVMMEGEIQDSFHIDGT-------------KSGKLFLNLKWTPQLVL  566 (570)
Q Consensus       520 ---~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-------------~~G~i~l~~~~~p~~~~  566 (570)
                         ++++||.+.|+++++..+...++||+|.+.             +.++|+++++|.+..++
T Consensus        82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~l  144 (146)
T cd04013          82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVL  144 (146)
T ss_pred             cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeC
Confidence               236999999999999988888999999532             23799999999998765

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.61  E-value=5.2e-15  Score=130.43  Aligned_cols=104  Identities=22%  Similarity=0.404  Sum_probs=90.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC--CceEeCcccCCCCCCeeeeEEEEEeecC---------------CCcE
Q 008305          446 LSITVIAAENLPKVDLIGKADPFVVLQLKKA--GNRAKTRVAHDTLNPVWNQTFDFVVEDG---------------QHEM  508 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~---------------~~~~  508 (570)
                      |+|.|++|+||+.. ..|.+||||+++++..  ..+++|++++++.||.|||+|.|.+...               ....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57899999999988 7789999999999731  4678999999999999999999998754               4568


Q ss_pred             EEEEEEECCCCCC-ceeEEEEEeccccccCceEEEEEEecCCC
Q 008305          509 LILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK  550 (570)
Q Consensus       509 L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~  550 (570)
                      |.|+|||++..++ ++||++.+++.++...+....||+|+...
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            9999999998754 79999999999998777789999997653

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.61  E-value=2.1e-15  Score=176.77  Aligned_cols=119  Identities=26%  Similarity=0.586  Sum_probs=106.8

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCC-CcEEEEEEEECCCCC
Q 008305          442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ-HEMLILDVYDHDTFG  520 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~V~d~~~~~  520 (570)
                      -.|.|.|+|++|+||.  +..|.+||||++.++. ..+.||++++++.||+|||.|+|.+.++. ++.|+|+|||++.++
T Consensus      1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~-~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200       1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN-GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred             CCcceEEEEeeccccc--cccCCCCCeEEEEECC-CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence            4789999999999998  4468999999999974 34669999999999999999999998764 467999999999998


Q ss_pred             CceeEEEEEeccccccCceEEEEEEecC--CCCeE---EEEEEEEEec
Q 008305          521 KDKMGKCIMTLTRVMMEGEIQDSFHIDG--TKSGK---LFLNLKWTPQ  563 (570)
Q Consensus       521 ~d~lG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~---i~l~~~~~p~  563 (570)
                      +|.+|.+.|++.++..++.+..||+|.+  ++.|+   |+++++|.+.
T Consensus      2055 kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~~ 2102 (2102)
T PLN03200       2055 KSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSNR 2102 (2102)
T ss_pred             CCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecCC
Confidence            8999999999999999999999999975  67899   9999999863

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.61  E-value=8e-15  Score=129.19  Aligned_cols=111  Identities=25%  Similarity=0.440  Sum_probs=87.9

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV  334 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v  334 (570)
                      |.+..|.|.|+|++|++|+..+..|.+||||++++.+..  .+.++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus         9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V   88 (135)
T cd08410           9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV   88 (135)
T ss_pred             ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence            345679999999999999999988999999999986422  2357899999999999999999998532  334699999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK  371 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  371 (570)
                      ||++.. +++++||++.+....... ...+.|..+.+
T Consensus        89 ~d~d~~-~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~  123 (135)
T cd08410          89 YGHNVK-SSNDFIGRIVIGQYSSGP-SETNHWRRMLN  123 (135)
T ss_pred             EeCCCC-CCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence            999998 899999998866533332 12456777654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>PLN03008 Phospholipase D delta

Probab=99.61  E-value=6.6e-15  Score=158.57  Aligned_cols=125  Identities=24%  Similarity=0.549  Sum_probs=106.8

Q ss_pred             ccceEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEEeCCCc
Q 008305          441 IVRGVLSITVIAAENLPKVDL------------------------------------------IGKADPFVVLQLKKAGN  478 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~------------------------------------------~g~~dpyv~v~~~~~~~  478 (570)
                      .--|.|.++|++|++|+.++.                                          .+.+||||+|.+++ .+
T Consensus        11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~-~r   89 (868)
T PLN03008         11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQ-AT   89 (868)
T ss_pred             EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECC-cc
Confidence            446889999999999985221                                          24679999999963 55


Q ss_pred             eEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCceeEEEEEeccccccCceEEEEEEecCC------CCe
Q 008305          479 RAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGT------KSG  552 (570)
Q Consensus       479 ~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G  552 (570)
                      +.||++++++.||+|||+|.|.|.++ ...|.|+|+|++.+++++||++.|++.++..+...+.|++|.+.      +.|
T Consensus        90 v~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~  168 (868)
T PLN03008         90 LARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAET  168 (868)
T ss_pred             eeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCc
Confidence            77999999999999999999999875 46899999999999989999999999999998888999999532      368


Q ss_pred             EEEEEEEEEecCCCC
Q 008305          553 KLFLNLKWTPQLVLR  567 (570)
Q Consensus       553 ~i~l~~~~~p~~~~~  567 (570)
                      +|+++++|+|....+
T Consensus       169 kl~v~lqf~pv~~~~  183 (868)
T PLN03008        169 AIFIDMKFTPFDQIH  183 (868)
T ss_pred             EEEEEEEEEEccccc
Confidence            999999999987654

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.60  E-value=3.3e-15  Score=131.72  Aligned_cols=102  Identities=30%  Similarity=0.457  Sum_probs=83.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~  517 (570)
                      .+.|+|+|++|++|+..+..|.+||||++++...   ..+++|++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~   92 (134)
T cd08403          13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYD   92 (134)
T ss_pred             CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence            5889999999999999998999999999998532   2467999999999999999999998532  3356999999999


Q ss_pred             CCCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHI  546 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L  546 (570)
                      ..++ ++||++.+++...  .....+|+.+
T Consensus        93 ~~~~~~~IG~~~l~~~~~--~~~~~~w~~~  120 (134)
T cd08403          93 RVGHNELIGVCRVGPNAD--GQGREHWNEM  120 (134)
T ss_pred             CCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence            8875 7999999998732  2333556655

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.60  E-value=2.9e-15  Score=132.24  Aligned_cols=109  Identities=19%  Similarity=0.344  Sum_probs=90.6

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEE
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVF  335 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~  335 (570)
                      .+..+.|.|+|++|+||+..+ .+.+||||++++.+...  .+++|++++++.||+|||+|.|.+..  .....|.|+||
T Consensus        11 ~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~   89 (137)
T cd08409          11 NPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM   89 (137)
T ss_pred             CCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence            345789999999999999988 78899999999986433  35789999999999999999999853  34468999999


Q ss_pred             eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      |++.. +++++||++.++......+...+.|..+.
T Consensus        90 ~~~~~-~~~~~lG~v~ig~~~~~~~~~~~hW~~~~  123 (137)
T cd08409          90 QSGGV-RKSKLLGRVVLGPFMYARGKELEHWNDML  123 (137)
T ss_pred             eCCCC-CCcceEEEEEECCcccCCChHHHHHHHHH
Confidence            99988 89999999999976665555566676664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=3.7e-16  Score=148.74  Aligned_cols=228  Identities=26%  Similarity=0.365  Sum_probs=169.2

Q ss_pred             CCCcccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEE--EecC-CCCe
Q 008305          255 YSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFT--VEDA-STQH  329 (570)
Q Consensus       255 ~~~~~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~--v~~~-~~~~  329 (570)
                      ++.+|......+..++..|++|++++..+..|||++..+.+.-.+  +.+|++..+++||.|||+-.+.  ..+. ....
T Consensus        84 ~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~  163 (362)
T KOG1013|consen   84 FELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKV  163 (362)
T ss_pred             hhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhh
Confidence            334555667788999999999999999999999999999864332  4678899999999999875543  3322 2345


Q ss_pred             EEEEEEeCCCCCCCCceEEEEEEEccccCCCee--eEEEEEeecccc--ccCCCcceeEEEEEEEEEeccCCCCCCCCCC
Q 008305          330 LTVRVFDDEGPMLAPEIIGIAQIALKELEPGKV--KDVWLKLVKDVK--VQRDTKNRGQVHLELLYCPFGTESSLKNPFN  405 (570)
Q Consensus       330 L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~--~~~w~~L~~~~~--~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~  405 (570)
                      +++.|.|.+.+ ...+++|+..+++..+.+...  ...|+.-.-+.+  ...+...+|++.+++.|.             
T Consensus       164 ~Rk~vcdn~~~-~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~-------------  229 (362)
T KOG1013|consen  164 LRKVVCDNDKK-THNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYS-------------  229 (362)
T ss_pred             hheeeccCccc-ccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccC-------------
Confidence            78899999998 888999999999888865432  222322211100  011124566666666552             


Q ss_pred             CCccchhhhhhhcccCchhhhhhccccccccCCCcccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeC
Q 008305          406 SDYSLTTLEKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKT  482 (570)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT  482 (570)
                                                         ....-+.|++.+|..|...|.+|.+||||..++..   ..-++||
T Consensus       230 -----------------------------------s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt  274 (362)
T KOG1013|consen  230 -----------------------------------STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKT  274 (362)
T ss_pred             -----------------------------------cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccC
Confidence                                               22466899999999999999999999999999853   2346899


Q ss_pred             cccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEECCCCC-CceeEEEEEec
Q 008305          483 RVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDHDTFG-KDKMGKCIMTL  531 (570)
Q Consensus       483 ~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~~~~~-~d~lG~~~i~l  531 (570)
                      .+.++|.||.||+.|.|.+..  .....+.|.|||++..+ .|++|-+...+
T Consensus       275 ~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~  326 (362)
T KOG1013|consen  275 QQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG  326 (362)
T ss_pred             cchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc
Confidence            999999999999999998853  35678999999999873 47888765543

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.59  E-value=2.7e-14  Score=125.09  Aligned_cols=111  Identities=23%  Similarity=0.447  Sum_probs=90.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC-----------ceEeCcccCCCCCCee-eeEEEEEeecCCCcEEEEE
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAG-----------NRAKTRVAHDTLNPVW-NQTFDFVVEDGQHEMLILD  512 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-----------~~~kT~v~~~t~nP~w-~e~f~f~v~~~~~~~L~i~  512 (570)
                      ...|++++|+||+ .+..|.+||||++++..+.           .++||++++++.||+| ||.|.|.+.  .++.|.|+
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence            3678999999998 6778999999999996322           3689999999999999 999999985  35689999


Q ss_pred             EEECCCCC----CceeEEEEEeccccccCc---eEEEEEEecCC-----CCeEEEEEE
Q 008305          513 VYDHDTFG----KDKMGKCIMTLTRVMMEG---EIQDSFHIDGT-----KSGKLFLNL  558 (570)
Q Consensus       513 V~d~~~~~----~d~lG~~~i~l~~l~~~~---~~~~w~~L~~~-----~~G~i~l~~  558 (570)
                      |||++..+    +++||++.++++++....   ....||+|+..     -+|+|.+++
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            99976532    479999999999998654   35789999743     268887765

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.59  E-value=1.4e-14  Score=125.68  Aligned_cols=106  Identities=25%  Similarity=0.395  Sum_probs=88.7

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEec---CCCCeEEEEEE
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVED---ASTQHLTVRVF  335 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~---~~~~~L~~~v~  335 (570)
                      ...+.|+|+|++|++|++.+..+.+||||++++.+..  ...++|++++++.||+|||+|.|....   ...+.+.|+||
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~   91 (123)
T cd04035          12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL   91 (123)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence            4568999999999999998888899999999986432  346899999999999999999996322   23568999999


Q ss_pred             eCCCCCCCCceEEEEEEEccccCCCeeeEEEEE
Q 008305          336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLK  368 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~  368 (570)
                      |++..  .+++||++.++++++..+...+.|+.
T Consensus        92 d~~~~--~~~~iG~~~i~l~~l~~~~~~~~~~~  122 (123)
T cd04035          92 DEDRF--GNDFLGETRIPLKKLKPNQTKQFNIC  122 (123)
T ss_pred             EcCCc--CCeeEEEEEEEcccCCCCcceEeecc
Confidence            99986  78999999999999998776666553

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.59  E-value=4.2e-15  Score=128.89  Aligned_cols=119  Identities=24%  Similarity=0.377  Sum_probs=92.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ce
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DK  523 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~  523 (570)
                      +|+|+|++|++|+..+..|.+||||++++++.....||++++++.||.|||+|.|.+..+..+.|.|+|||++..++ ++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            37899999999999998899999999999754445678888999999999999999876667899999999998865 79


Q ss_pred             eEEEEEeccccccCceEEEEEEec--CCCCeEEEEEEEEEecC
Q 008305          524 MGKCIMTLTRVMMEGEIQDSFHID--GTKSGKLFLNLKWTPQL  564 (570)
Q Consensus       524 lG~~~i~l~~l~~~~~~~~w~~L~--~~~~G~i~l~~~~~p~~  564 (570)
                      ||++.+++++...... .++.-+.  -...|.++..-.+.|..
T Consensus        81 iG~~~i~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (124)
T cd04037          81 IGETVIDLEDRFFSKH-RATCGLPPTYEESGPNQWRDSLKPSG  122 (124)
T ss_pred             eEEEEEeecccccchH-HHhccCCCcccccCceecCcccCccc
Confidence            9999999998764211 1111121  12467777766666654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.59  E-value=5.4e-14  Score=123.02  Aligned_cols=119  Identities=24%  Similarity=0.415  Sum_probs=96.7

Q ss_pred             EEEEEEEEecCCCCCC--CCCCCCcEEEEEEEeCC---CceEEeeeeCCCC-CCeeecEEEEEEecCCCCeEEEEEEeCC
Q 008305          265 TLDVKLVQAKELTNKD--LIGKSDPFVVIFVRPLR---DRMKTSKTINNEL-NPIWNEHFEFTVEDASTQHLTVRVFDDE  338 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~--~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~-nP~Wne~f~f~v~~~~~~~L~~~v~d~d  338 (570)
                      .|+|+|++|++|+..+  ..+.+||||++++...+   ...++|+++.++. ||+|||+|.|.+..+....|.++|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            6899999999999887  56889999999997433   3568899887765 9999999999998766668999999999


Q ss_pred             CCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          339 GPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       339 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      ..  ++++||++.++++++..+   ..|++|....   ......|.|.+.+.+
T Consensus        83 ~~--~~~~iG~~~~~l~~l~~g---~~~~~l~~~~---~~~~~~~~l~v~~~~  127 (128)
T cd00275          83 SG--DDDFLGQACLPLDSLRQG---YRHVPLLDSK---GEPLELSTLFVHIDI  127 (128)
T ss_pred             CC--CCcEeEEEEEEhHHhcCc---eEEEEecCCC---CCCCcceeEEEEEEE
Confidence            86  889999999999999764   3578886432   123567888888764

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.59  E-value=1.8e-14  Score=123.86  Aligned_cols=108  Identities=22%  Similarity=0.408  Sum_probs=85.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCCCC-c
Q 008305          446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTFGK-D  522 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~~~-d  522 (570)
                      |.|+|++|+||+..   |.+||||++++++ ...++|+++++ .||.|||+|.|.+...  ....|.|.+||.+..++ .
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~-~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~   76 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ-VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI   76 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECC-EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence            78999999999976   7899999999964 34679999988 9999999999998653  23468888898876544 3


Q ss_pred             eeEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEEEE
Q 008305          523 KMGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNLKW  560 (570)
Q Consensus       523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~  560 (570)
                      .+|.+.+.  .+..++..++||+|.+.     ..|+|+++++|
T Consensus        77 ~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          77 VIGKVALS--KLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEEEec--CcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            67766554  44446667899999764     37999999976

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.58  E-value=2.1e-15  Score=133.07  Aligned_cols=109  Identities=25%  Similarity=0.410  Sum_probs=93.0

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecCC--CCeEEEEEEe
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDAS--TQHLTVRVFD  336 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~~--~~~L~~~v~d  336 (570)
                      +..|.|.|+|++|++|+..+..+.+||||++++.+...  ..++|+++.++.||.|||+|.|.+....  ...|.|+|||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d   90 (134)
T cd00276          11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence            45689999999999999988888999999999985433  3578999999999999999999986543  5689999999


Q ss_pred             CCCCCCCCceEEEEEEEccccCCCeeeEEEEEeecc
Q 008305          337 DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKD  372 (570)
Q Consensus       337 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  372 (570)
                      .+.. +.+++||++.+++++  .+...+.|++|...
T Consensus        91 ~~~~-~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~  123 (134)
T cd00276          91 KDSV-GRNEVIGQVVLGPDS--GGEELEHWNEMLAS  123 (134)
T ss_pred             cCCC-CCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence            9997 889999999999999  45557889888643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.57  E-value=1.9e-14  Score=124.18  Aligned_cols=93  Identities=27%  Similarity=0.383  Sum_probs=80.0

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeec-CCCcEEEEEEEECCCC
Q 008305          441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVED-GQHEMLILDVYDHDTF  519 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~-~~~~~L~i~V~d~~~~  519 (570)
                      ...+.|+|+|++|++|+. +..+.+||||++++++  .++||++++++.||+|||+|.|.... .....|.|+|||++..
T Consensus        25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~--~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~  101 (127)
T cd04032          25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG--QEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNG  101 (127)
T ss_pred             CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC--ccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCC
Confidence            446899999999999984 6678899999999964  48899999999999999999997532 3567899999999998


Q ss_pred             CC-ceeEEEEEecccccc
Q 008305          520 GK-DKMGKCIMTLTRVMM  536 (570)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~  536 (570)
                      ++ ++||++.++|.....
T Consensus       102 s~dd~IG~~~i~l~~~~~  119 (127)
T cd04032         102 WDDDLLGTCSVVPEAGVH  119 (127)
T ss_pred             CCCCeeEEEEEEecCCce
Confidence            65 799999999997653

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=3.7e-14  Score=147.33  Aligned_cols=122  Identities=35%  Similarity=0.523  Sum_probs=105.3

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-CceEeCcccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEECCC
Q 008305          442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA-GNRAKTRVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDHDT  518 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~~~  518 (570)
                      ....|.|+|.+|++|+..+..|.+||||++++... ..+.+|++.++|+||.|||+|.|.+..  .....|.+.|||.++
T Consensus       165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr  244 (421)
T KOG1028|consen  165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR  244 (421)
T ss_pred             cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence            35789999999999999997778999999999643 367899999999999999999999753  356789999999999


Q ss_pred             CCC-ceeEEEEEeccccccCceEEEEEEecCC------CCeEEEEEEEEEec
Q 008305          519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT------KSGKLFLNLKWTPQ  563 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~  563 (570)
                      +++ ++||++.++|..+........|.+|...      ..|+|.+.++|.|.
T Consensus       245 fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~  296 (421)
T KOG1028|consen  245 FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPT  296 (421)
T ss_pred             cccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecC
Confidence            977 7999999999998777667889998532      23799999999987

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.56  E-value=7.2e-14  Score=121.33  Aligned_cols=111  Identities=27%  Similarity=0.438  Sum_probs=90.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-c
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-D  522 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d  522 (570)
                      ..|.|+|.+|+ |...+..+.+||||++++++ ...++|++++++.||.|||.|.|.+..  .+.|.|+|||++..+. +
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~-~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~   77 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDG-QPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADV   77 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECC-cccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCc
Confidence            36899999998 55555578899999999964 347899999999999999999999853  5789999999998865 6


Q ss_pred             eeEEEEEeccccccCce-----EEEEEEecC------CCCeEEEEEE
Q 008305          523 KMGKCIMTLTRVMMEGE-----IQDSFHIDG------TKSGKLFLNL  558 (570)
Q Consensus       523 ~lG~~~i~l~~l~~~~~-----~~~w~~L~~------~~~G~i~l~~  558 (570)
                      +||++.++|+++.....     ...|+++..      ...|++++++
T Consensus        78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            99999999999985543     345888842      2378888875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.56  E-value=3.9e-14  Score=122.33  Aligned_cols=99  Identities=28%  Similarity=0.435  Sum_probs=85.3

Q ss_pred             EEEEeecCCCCCCCCCCCcEEEEEEeCCC-----ceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCC----C
Q 008305          449 TVIAAENLPKVDLIGKADPFVVLQLKKAG-----NRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDT----F  519 (570)
Q Consensus       449 ~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~----~  519 (570)
                      ..++|++|+..+..|.+||||++++.+..     ..++|++++++.||+|||+|.|.+.....+.|.|+|||++.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            35899999999988999999999997543     25899999999999999999998765556789999999986    5


Q ss_pred             CC-ceeEEEEEeccccccCceEEEEEEec
Q 008305          520 GK-DKMGKCIMTLTRVMMEGEIQDSFHID  547 (570)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (570)
                      ++ ++||++.++++++..+.....|++|.
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~  113 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK  113 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence            44 79999999999999887777889983

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.54  E-value=1.2e-13  Score=120.69  Aligned_cols=114  Identities=27%  Similarity=0.449  Sum_probs=93.7

Q ss_pred             eEEEEEEEEeecCCCCC--CCCCCCcEEEEEEeC----CCceEeCcccCCCC-CCeeeeEEEEEeecCCCcEEEEEEEEC
Q 008305          444 GVLSITVIAAENLPKVD--LIGKADPFVVLQLKK----AGNRAKTRVAHDTL-NPVWNQTFDFVVEDGQHEMLILDVYDH  516 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~--~~g~~dpyv~v~~~~----~~~~~kT~v~~~t~-nP~w~e~f~f~v~~~~~~~L~i~V~d~  516 (570)
                      -.|+|+|++|+||+..+  ..+.+||||++++.+    ...+++|+++.++. ||.|||+|.|.+..+....|.|+|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            36899999999999887  578899999999953    23568999988775 999999999999866667899999999


Q ss_pred             CCCCCceeEEEEEeccccccCceEEEEEEecC-----CCCeEEEEEEEE
Q 008305          517 DTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDG-----TKSGKLFLNLKW  560 (570)
Q Consensus       517 ~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~~~~  560 (570)
                      +..++++||++.++++++..+   .+|++|.+     ...|.|.+++++
T Consensus        82 ~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          82 DSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence            987557999999999998432   36788853     246899988875

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.53  E-value=2.7e-14  Score=167.73  Aligned_cols=121  Identities=15%  Similarity=0.287  Sum_probs=104.0

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCC-CCeEEEEEEeCCC
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAS-TQHLTVRVFDDEG  339 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~-~~~L~~~v~d~d~  339 (570)
                      .-.|.|.|+|++|+||.  +..|.+||||+++++.  +.+.||++++++.||+|||+|+|.+.++. .+.+.++|||+|.
T Consensus      1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200       1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred             hCCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence            46899999999999998  4468999999999983  33678999999999999999999998775 3679999999999


Q ss_pred             CCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeE---EEEEEEEEe
Q 008305          340 PMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQ---VHLELLYCP  393 (570)
Q Consensus       340 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~---l~l~l~~~p  393 (570)
                      + + ++.+|.++|++.++..+.....||+|.+      +++..|+   |++++.|.+
T Consensus      2053 f-~-kd~~G~~~i~l~~vv~~~~~~~~~~L~~------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2053 F-G-KSSLGKVTIQIDRVVMEGTYSGEYSLNP------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             c-C-CCCCceEEEEHHHHhcCceeeeeeecCc------ccccCCCcceEEEEEEecC
Confidence            8 4 5589999999999999888999999953      3456677   999999853

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.50  E-value=3.3e-13  Score=113.20  Aligned_cols=105  Identities=26%  Similarity=0.420  Sum_probs=78.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECC-----
Q 008305          446 LSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHD-----  517 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~-----  517 (570)
                      |.|+|++|+||+     +.+||||+++++..   ..+.||+++++|.||+|||+|+|.+..  ...|.+.|||++     
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence            579999999995     55899999998642   356899999999999999999999963  668999999983     


Q ss_pred             --CCCC-ceeEEEEEeccc--cccCceEEEEEEecCCCCeEEEEEEEE
Q 008305          518 --TFGK-DKMGKCIMTLTR--VMMEGEIQDSFHIDGTKSGKLFLNLKW  560 (570)
Q Consensus       518 --~~~~-d~lG~~~i~l~~--l~~~~~~~~w~~L~~~~~G~i~l~~~~  560 (570)
                        ..++ +.+|.+.+.|+.  +...+..+.-+.|.+   =+|.++++|
T Consensus        74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~---~~~~~s~~~  118 (118)
T cd08686          74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG---ITVNLSIKF  118 (118)
T ss_pred             ccccCcccEEEEEEEEECHHHhccCCeeEEEEEecC---EEEEEEEeC
Confidence              3344 689777777654  334444445555554   255556554

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.50  E-value=2.1e-13  Score=115.84  Aligned_cols=89  Identities=28%  Similarity=0.502  Sum_probs=75.7

Q ss_pred             EEEecCCCCCCCCCCCCcEEEEEEEeCC---CceEEeeeeCCCCCCeeecEEEEEEecCC----CCeEEEEEEeCCCCCC
Q 008305          270 LVQAKELTNKDLIGKSDPFVVIFVRPLR---DRMKTSKTINNELNPIWNEHFEFTVEDAS----TQHLTVRVFDDEGPML  342 (570)
Q Consensus       270 V~~A~~L~~~~~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~nP~Wne~f~f~v~~~~----~~~L~~~v~d~d~~~~  342 (570)
                      .++|++|+..+..|.+||||++++.+..   ...++|+++++++||+|| +|.|.+.+..    .+.|.|+|||++.. +
T Consensus         6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~-~   83 (110)
T cd04047           6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS-G   83 (110)
T ss_pred             EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC-C
Confidence            4689999999988999999999987432   235899999999999999 7888764321    56899999999998 8


Q ss_pred             CCceEEEEEEEccccCCC
Q 008305          343 APEIIGIAQIALKELEPG  360 (570)
Q Consensus       343 ~d~~lG~~~i~l~~l~~~  360 (570)
                      +|++||++.++++++..+
T Consensus        84 ~d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          84 KHDLIGEFETTLDELLKS  101 (110)
T ss_pred             CCcEEEEEEEEHHHHhcC
Confidence            999999999999999854

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.47  E-value=2.9e-13  Score=108.88  Aligned_cols=85  Identities=34%  Similarity=0.572  Sum_probs=76.3

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE  345 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~  345 (570)
                      |+|+|++|++|...+..+.+||||++++.......++|+++.++.+|.|||+|.|.+.....+.|.|+|||++.. +.|+
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~-~~~~   79 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSF-GKDE   79 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSS-SSEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCC-CCCC
Confidence            789999999999988788999999999995444569999999999999999999998877777899999999998 7799


Q ss_pred             eEEEEE
Q 008305          346 IIGIAQ  351 (570)
Q Consensus       346 ~lG~~~  351 (570)
                      +||++.
T Consensus        80 ~iG~~~   85 (85)
T PF00168_consen   80 LIGEVK   85 (85)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999874

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.40  E-value=2e-12  Score=109.73  Aligned_cols=88  Identities=31%  Similarity=0.527  Sum_probs=74.2

Q ss_pred             EEEEEeecCCCCCCCCCCCcEEEEEEeCCC----ceEeCcccCCCCCCeeeeEEEEEeecC----CCcEEEEEEEECCCC
Q 008305          448 ITVIAAENLPKVDLIGKADPFVVLQLKKAG----NRAKTRVAHDTLNPVWNQTFDFVVEDG----QHEMLILDVYDHDTF  519 (570)
Q Consensus       448 V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~----~~~kT~v~~~t~nP~w~e~f~f~v~~~----~~~~L~i~V~d~~~~  519 (570)
                      +..++|++|+..+..|.+||||++++.+..    ..++|++++++.||.|| .|.|.+...    ....|.|+|||++..
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            446799999999999999999999986432    36899999999999999 688876432    257899999999988


Q ss_pred             CC-ceeEEEEEecccccc
Q 008305          520 GK-DKMGKCIMTLTRVMM  536 (570)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~  536 (570)
                      ++ ++||++.++++++..
T Consensus        83 ~~d~~iG~~~~~l~~l~~  100 (110)
T cd04047          83 GKHDLIGEFETTLDELLK  100 (110)
T ss_pred             CCCcEEEEEEEEHHHHhc
Confidence            66 699999999999973

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.38  E-value=3.7e-12  Score=102.41  Aligned_cols=83  Identities=39%  Similarity=0.749  Sum_probs=73.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC-ceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ce
Q 008305          446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAG-NRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DK  523 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~  523 (570)
                      |+|+|++|+||+..+..+.+||||++.+++.. ..++|++++++.+|.|+|.|.|.+.....+.|.|+|||++..++ ++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            78999999999998888899999999998533 46899999999999999999999877777779999999999885 69


Q ss_pred             eEEEE
Q 008305          524 MGKCI  528 (570)
Q Consensus       524 lG~~~  528 (570)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99874

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=1.2e-12  Score=133.82  Aligned_cols=122  Identities=31%  Similarity=0.566  Sum_probs=101.9

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC-
Q 008305          262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP-  340 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~-  340 (570)
                      -...+.++|++|++|..+|..|++||||.+.++   +.+.+|+++...+||+|||.|.|.+++ .++.++++|||.|.. 
T Consensus       293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~---ktkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dl  368 (1283)
T KOG1011|consen  293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG---KTKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDL  368 (1283)
T ss_pred             cceeeEEeeeecccceecccCCCCCCcEEEeec---ccchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccH
Confidence            345789999999999999999999999999998   667889999999999999999999996 457999999998865 


Q ss_pred             ---------CCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          341 ---------MLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       341 ---------~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                               ...|||+|+..|.+..|...  .+.||.|.+..   ......|-|++.+...
T Consensus       369 ksklrqkl~resddflgqtvievrtlsge--mdvwynlekrt---dksavsgairlhisve  424 (1283)
T KOG1011|consen  369 KSKLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRT---DKSAVSGAIRLHISVE  424 (1283)
T ss_pred             HHHHHHHhhhcccccccceeEEEEecccc--hhhhcchhhcc---chhhccceEEEEEEEE
Confidence                     15789999999999988643  67899997653   2445678777666554

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.34  E-value=8.6e-13  Score=141.71  Aligned_cols=93  Identities=30%  Similarity=0.465  Sum_probs=82.7

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCC
Q 008305          441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFG  520 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~  520 (570)
                      +....++|++.+|-+|.+.|.+|..|||+.+.+++....-++..+.+|+||+|++.|++.+..+....+.++|||+|..+
T Consensus       610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~  689 (1105)
T KOG1326|consen  610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA  689 (1105)
T ss_pred             cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence            34557889999999999999999999999999986555567788899999999999999998888888999999999987


Q ss_pred             C-ceeEEEEEeccc
Q 008305          521 K-DKMGKCIMTLTR  533 (570)
Q Consensus       521 ~-d~lG~~~i~l~~  533 (570)
                      . +.+|+..++|++
T Consensus       690 ~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  690 QDEKIGETTIDLEN  703 (1105)
T ss_pred             ccchhhceehhhhh
Confidence            5 699999999886

>PLN02270 phospholipase D alpha

Probab=99.32  E-value=1.7e-11  Score=132.57  Aligned_cols=129  Identities=23%  Similarity=0.436  Sum_probs=107.8

Q ss_pred             CceEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEEEeCCCceEEeeeeCCC-CCCeeecEEEEEE
Q 008305          262 PCGTLDVKLVQAKELTNKD------------------LIGKSDPFVVIFVRPLRDRMKTSKTINNE-LNPIWNEHFEFTV  322 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~------------------~~g~~dpyv~v~l~~~~~~~~~T~~~~~t-~nP~Wne~f~f~v  322 (570)
                      -.|.|.|+|.+|++|++.+                  ..+.+||||.+.++  +.+..||+++.+. .||+|||+|.+.+
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~a~v~rtr~~~~~~~~p~w~e~f~i~~   83 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE--KARVGRTRKIENEPKNPRWYESFHIYC   83 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC--CcEEEEEeecCCCCCCCccccceEEee
Confidence            4799999999999998631                  12468999999998  4678899999885 6999999999999


Q ss_pred             ecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEeccCC
Q 008305          323 EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTE  397 (570)
Q Consensus       323 ~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~  397 (570)
                      .... ..+.|.|.|.|.+  ...+||.+.+|+.++..+...+.|+++....  .+..+...+|+++++|.|....
T Consensus        84 ah~~-~~v~f~vkd~~~~--g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~--~~p~~~~~~~~~~~~f~~~~~~  153 (808)
T PLN02270         84 AHMA-SNIIFTVKDDNPI--GATLIGRAYIPVEEILDGEEVDRWVEILDND--KNPIHGGSKIHVKLQYFEVTKD  153 (808)
T ss_pred             ccCc-ceEEEEEecCCcc--CceEEEEEEEEHHHhcCCCccccEEeccCCC--CCcCCCCCEEEEEEEEEEcccC
Confidence            8765 5899999999998  5669999999999999999899999997653  2233445689999999997654

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.30  E-value=2.5e-11  Score=100.50  Aligned_cols=95  Identities=37%  Similarity=0.607  Sum_probs=82.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE  345 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~  345 (570)
                      |.|+|++|++|......+..+|||++++.+.+....+|+++.++.||.|||+|.|.+.....+.|.++|||.+.. +.+.
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~-~~~~   80 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRF-GRDD   80 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCc-cCCc
Confidence            689999999998877556789999999984322578999999999999999999999876567999999999987 6789


Q ss_pred             eEEEEEEEccccCCCe
Q 008305          346 IIGIAQIALKELEPGK  361 (570)
Q Consensus       346 ~lG~~~i~l~~l~~~~  361 (570)
                      ++|.+.+++.++..+.
T Consensus        81 ~~G~~~~~l~~~~~~~   96 (101)
T smart00239       81 FIGQVTIPLSDLLLGG   96 (101)
T ss_pred             eeEEEEEEHHHcccCc
Confidence            9999999999987654

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.29  E-value=2e-11  Score=105.46  Aligned_cols=95  Identities=21%  Similarity=0.344  Sum_probs=80.1

Q ss_pred             EEEEEEEecCCCCCC--CCCC--CCcEEEEEEEeCCCceEEeeeeCCCCC--CeeecEEEEEEec---------------
Q 008305          266 LDVKLVQAKELTNKD--LIGK--SDPFVVIFVRPLRDRMKTSKTINNELN--PIWNEHFEFTVED---------------  324 (570)
Q Consensus       266 L~V~V~~A~~L~~~~--~~g~--~dpyv~v~l~~~~~~~~~T~~~~~t~n--P~Wne~f~f~v~~---------------  324 (570)
                      |+|.|.+|++++..+  ..|.  +||||++.+.+....+++|.+..+++|  |.||+.|.|.+..               
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            799999999966533  3564  999999999865556789999999999  9999999988754               


Q ss_pred             --------CCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCe
Q 008305          325 --------ASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGK  361 (570)
Q Consensus       325 --------~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~  361 (570)
                              .....|.++|||.|.+ +.|++||+++++|..+..+.
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~-s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKF-SPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECccc-CCCCcceEEEEEhhhccccc
Confidence                    1245799999999999 99999999999999997654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd00030 C2 C2 domain

Probab=99.28  E-value=3.1e-11  Score=99.74  Aligned_cols=101  Identities=41%  Similarity=0.707  Sum_probs=86.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE  345 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~  345 (570)
                      |.|+|++|++|......+.++|||.+.+..  ...++|.++.++.||.|||.|.|.+.......+.++|||.+.. +.+.
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~-~~~~   77 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRF-SKDD   77 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCC-CCCc
Confidence            468999999998866667899999999983  3678999999999999999999999864567899999999987 7789


Q ss_pred             eEEEEEEEccccC-CCeeeEEEEEe
Q 008305          346 IIGIAQIALKELE-PGKVKDVWLKL  369 (570)
Q Consensus       346 ~lG~~~i~l~~l~-~~~~~~~w~~L  369 (570)
                      ++|.+.+++.++. .......|++|
T Consensus        78 ~ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          78 FLGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             eeEEEEEeHHHhhhcCCcCcceecC
Confidence            9999999999998 55556677654

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=7.5e-12  Score=128.13  Aligned_cols=113  Identities=28%  Similarity=0.565  Sum_probs=95.4

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCC-
Q 008305          441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTF-  519 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~-  519 (570)
                      ..+..++++|.+|++|...|..|++||||.+.++  ..+.+|+++...+||+|||.|.|.|.+ ..+.|.+.|||.+.. 
T Consensus       292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~--ktkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dl  368 (1283)
T KOG1011|consen  292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG--KTKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDL  368 (1283)
T ss_pred             ccceeeEEeeeecccceecccCCCCCCcEEEeec--ccchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccH
Confidence            5678999999999999999999999999999995  467799999999999999999999986 567899999998742 


Q ss_pred             -----------CCceeEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEE
Q 008305          520 -----------GKDKMGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNL  558 (570)
Q Consensus       520 -----------~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~  558 (570)
                                 ++||||+..|.+..+  .++++-||.|+..     -+|-|++.+
T Consensus       369 ksklrqkl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhi  421 (1283)
T KOG1011|consen  369 KSKLRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHI  421 (1283)
T ss_pred             HHHHHHHhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEE
Confidence                       357999999998876  4678899999743     367665543

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.25  E-value=4.1e-11  Score=103.48  Aligned_cols=94  Identities=24%  Similarity=0.323  Sum_probs=78.2

Q ss_pred             EEEEEEEeecCCCCC--CCCC--CCcEEEEEEeCC-CceEeCcccCCCCC--CeeeeEEEEEeecC--------------
Q 008305          446 LSITVIAAENLPKVD--LIGK--ADPFVVLQLKKA-GNRAKTRVAHDTLN--PVWNQTFDFVVEDG--------------  504 (570)
Q Consensus       446 L~V~v~~a~~L~~~~--~~g~--~dpyv~v~~~~~-~~~~kT~v~~~t~n--P~w~e~f~f~v~~~--------------  504 (570)
                      |+|.|.+|+|++..+  ..|.  +||||++++.+. ..+++|.+.+++.|  |.||++|.|++..+              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            789999999966543  3564  999999999763 57899999999999  99999999987642              


Q ss_pred             ---------CCcEEEEEEEECCCCCC-ceeEEEEEeccccccCce
Q 008305          505 ---------QHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGE  539 (570)
Q Consensus       505 ---------~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~  539 (570)
                               ....|.++|||.|.++. |+||.++++|..+.+...
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~  126 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK  126 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence                     24579999999999876 799999999999876543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02270 phospholipase D alpha

Probab=99.23  E-value=8.6e-11  Score=127.20  Aligned_cols=123  Identities=18%  Similarity=0.339  Sum_probs=104.5

Q ss_pred             cceEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEEeCCCceEeCcccCCC-CCCeeeeEEEEEee
Q 008305          442 VRGVLSITVIAAENLPKVD------------------LIGKADPFVVLQLKKAGNRAKTRVAHDT-LNPVWNQTFDFVVE  502 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~------------------~~g~~dpyv~v~~~~~~~~~kT~v~~~t-~nP~w~e~f~f~v~  502 (570)
                      --|.|.++|++|++|++.+                  ..+.+||||.|.+.+ ....||+++.+. .||.|+|+|.+.|.
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-a~v~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK-ARVGRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC-cEEEEEeecCCCCCCCccccceEEeec
Confidence            3589999999999998631                  124679999999974 678899999885 69999999999998


Q ss_pred             cCCCcEEEEEEEECCCCCCceeEEEEEeccccccCceEEEEEEecCC------CCeEEEEEEEEEecCCC
Q 008305          503 DGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGT------KSGKLFLNLKWTPQLVL  566 (570)
Q Consensus       503 ~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~~~~  566 (570)
                      .. -..+.|.|+|.+.++..+||.+.||..++..+...++||++.+.      +..+|+++++|.|....
T Consensus        85 h~-~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~  153 (808)
T PLN02270         85 HM-ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKD  153 (808)
T ss_pred             cC-cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccC
Confidence            75 47899999999999989999999999999999899999998542      23599999999997654

>cd00030 C2 C2 domain

Probab=99.20  E-value=1.5e-10  Score=95.56  Aligned_cols=100  Identities=41%  Similarity=0.684  Sum_probs=85.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-cee
Q 008305          446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DKM  524 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l  524 (570)
                      |.|.|++|++|......+.++|||.+.+.+ ...++|+++.++.||.||+.|.|.+.......+.|+||+.+..+. +++
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~-~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~i   79 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG-KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFL   79 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc-CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCcee
Confidence            478999999998876677899999999964 467899999999999999999999975457789999999988764 699


Q ss_pred             EEEEEeccccc-cCceEEEEEEe
Q 008305          525 GKCIMTLTRVM-MEGEIQDSFHI  546 (570)
Q Consensus       525 G~~~i~l~~l~-~~~~~~~w~~L  546 (570)
                      |++.+++.++. ......+|++|
T Consensus        80 g~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          80 GEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEEeHHHhhhcCCcCcceecC
Confidence            99999999998 55566778764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.19  E-value=5.1e-11  Score=128.34  Aligned_cols=293  Identities=19%  Similarity=0.263  Sum_probs=173.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP  344 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d  344 (570)
                      .++|.|++|-+|.+.|.+|.+|||+.+.++.. ...-++..+.+|+||++.+.|.+....+....+.++|||+|.. +.|
T Consensus       614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~-~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~-~~d  691 (1105)
T KOG1326|consen  614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKK-RTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLE-AQD  691 (1105)
T ss_pred             eEEEEEEEeeeccccCCCCCcCceeeeeeccc-hhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecc-ccc
Confidence            56799999999999999999999999999821 1124667889999999999999998888777899999999999 889


Q ss_pred             ceEEEEEEEccccCC-------C-------eeeEEEEEeeccccc-c---CCC--------------cceeE--------
Q 008305          345 EIIGIAQIALKELEP-------G-------KVKDVWLKLVKDVKV-Q---RDT--------------KNRGQ--------  384 (570)
Q Consensus       345 ~~lG~~~i~l~~l~~-------~-------~~~~~w~~L~~~~~~-~---~~~--------------~~~G~--------  384 (570)
                      +.+|+..++|+.--.       +       .....|..-..+... .   ..+              +..|+        
T Consensus       692 ~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~~~i~~~g~~~~~d~~~  771 (1105)
T KOG1326|consen  692 EKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEVSAIKWKGESDIYDEKE  771 (1105)
T ss_pred             chhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCcceEEecChhhhhcccc
Confidence            999999999875321       0       011234332111100 0   000              00010        


Q ss_pred             ---EE---EEE------EEEeccCCCCCCCCCCCCccchhhh-hhhcccCchhhhh----hccccccccCCCcccceEEE
Q 008305          385 ---VH---LEL------LYCPFGTESSLKNPFNSDYSLTTLE-KSLKSETSRAEAA----ELGKIATQKKSDVIVRGVLS  447 (570)
Q Consensus       385 ---l~---l~l------~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~L~  447 (570)
                         ..   +..      .+.+..  ...-.+....-++.+-. ...++++.+.+..    +...-.-+..+..+....++
T Consensus       772 ~k~~~~~~L~~~~~r~~~~i~~~--~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lr  849 (1105)
T KOG1326|consen  772 AKTIEVPHLGNAWERLALWILMN--QGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELR  849 (1105)
T ss_pred             cCCCCCcccchHHHHHHHHhhhh--cCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEE
Confidence               00   000      011111  11111111100000000 0011111111111    00000111112235577899


Q ss_pred             EEEEEeecCCCCCCC----CCCCcEEEEEEe-CCCceEeCcccCCCC--CCeeeeEEEEEeec-----------------
Q 008305          448 ITVIAAENLPKVDLI----GKADPFVVLQLK-KAGNRAKTRVAHDTL--NPVWNQTFDFVVED-----------------  503 (570)
Q Consensus       448 V~v~~a~~L~~~~~~----g~~dpyv~v~~~-~~~~~~kT~v~~~t~--nP~w~e~f~f~v~~-----------------  503 (570)
                      |.|..-.+....+..    ..+|-||+-.+- ..+.+++|.+.+++.  .-.||-.|.|+...                 
T Consensus       850 viiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws  929 (1105)
T KOG1326|consen  850 VIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWS  929 (1105)
T ss_pred             EEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhccc
Confidence            999888887765543    247999998875 345678888887753  34455555554320                 


Q ss_pred             ------CCCcEEEEEEEECCCCCC-ceeEEEEEeccccccC----------------------ceEEEEEEecCC-----
Q 008305          504 ------GQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMME----------------------GEIQDSFHIDGT-----  549 (570)
Q Consensus       504 ------~~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~----------------------~~~~~w~~L~~~-----  549 (570)
                            ..-..|.|+|||.|.+++ |+||..+++|++....                      +.+..|+|+...     
T Consensus       930 ~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~ 1009 (1105)
T KOG1326|consen  930 LDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAK 1009 (1105)
T ss_pred             cccccccCchheEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCcc
Confidence                  011359999999999987 5999999999986522                      223568887422     


Q ss_pred             -CCeEEEEEEEEE
Q 008305          550 -KSGKLFLNLKWT  561 (570)
Q Consensus       550 -~~G~i~l~~~~~  561 (570)
                       -.|++.+++...
T Consensus      1010 ~l~Gkvem~leil 1022 (1105)
T KOG1326|consen 1010 VLAGKVEMSLEIL 1022 (1105)
T ss_pred             eecceeeeehhhh
Confidence             268888877653

>PLN02223 phosphoinositide phospholipase C

Probab=99.18  E-value=4e-10  Score=117.41  Aligned_cols=122  Identities=20%  Similarity=0.293  Sum_probs=92.2

Q ss_pred             ceEEEEEEEEecCCCC-----CCCCCCCCcEEEEEEEeC--CCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEE
Q 008305          263 CGTLDVKLVQAKELTN-----KDLIGKSDPFVVIFVRPL--RDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVF  335 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~-----~~~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~  335 (570)
                      ...|.|+|+.|+++..     .+....+||||+|.+...  ....++|++..|+.||+|||+|.|.+..++--.|+|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            3679999999998751     122345799999999742  234567888899999999999999999888778999999


Q ss_pred             eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      |+|.. ..|+++|++.+|+..|..|-   .+++|....+   ..-....|.+.+.|
T Consensus       488 D~D~~-~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g---~~l~~~~Ll~~f~~  536 (537)
T PLN02223        488 DYEVS-TADAFCGQTCLPVSELIEGI---RAVPLYDERG---KACSSTMLLTRFKW  536 (537)
T ss_pred             ecCCC-CCCcEEEEEecchHHhcCCc---eeEeccCCCc---CCCCCceEEEEEEe
Confidence            99987 78999999999999999875   3467754321   11123455555544

>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1

Probab=99.17  E-value=2.1e-10  Score=93.11  Aligned_cols=85  Identities=25%  Similarity=0.454  Sum_probs=73.6

Q ss_pred             HHHHHhHhH-hH-HHHHHHHHHHhHHHHHhh-cCCCCcceEEEeEEecCCCCCeEeEEEEEeccCCCceeEEEEEEEEcC
Q 008305           75 NYQLDKLWP-FI-NEAASELIRSNVEPILEQ-YRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELEMQWDG  151 (570)
Q Consensus        75 N~~l~~~Wp-~~-~~~~~~~~~~~~~~~l~~-~~p~~l~~i~~~~~~lG~~pP~i~~i~~~~~~~~~~~~~~d~~~~~~~  151 (570)
                      |.++++++- ++ ++.+.+.+++.++..|++ .+|+|++.+++++++||+.||.|+++++.+.+ .++++.+|+|++|.|
T Consensus         1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~-~~g~~~~~~dv~Y~G   79 (91)
T PF10296_consen    1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLD-PDGELWIEFDVSYSG   79 (91)
T ss_pred             ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccC-CCCCEEEEEEEEEcC
Confidence            677888655 44 458899999999999998 46999999999999999999999999998764 556799999999999


Q ss_pred             CCcEEEEEe
Q 008305          152 NPNIVLDIR  160 (570)
Q Consensus       152 ~~~i~l~~~  160 (570)
                      +..+.++++
T Consensus        80 ~~~l~l~t~   88 (91)
T PF10296_consen   80 GFSLTLETK   88 (91)
T ss_pred             CeEEEEEEE
Confidence            998888875

These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.17  E-value=7.9e-11  Score=122.68  Aligned_cols=120  Identities=23%  Similarity=0.338  Sum_probs=104.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCce
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDK  523 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~  523 (570)
                      .-|.|.|.+|+||+..+..|..||||.|.+. .+..+||.++-+++.|.|.|.|+|.+. ..-..|.|-|||.|...++.
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD-~E~v~RT~tv~ksL~PF~gEe~~~~iP-~~F~~l~fYv~D~d~~~D~~   82 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD-QEEVCRTATVEKSLCPFFGEEFYFEIP-RTFRYLSFYVWDRDLKRDDI   82 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeec-chhhhhhhhhhhhcCCccccceEEecC-cceeeEEEEEeccccccccc
Confidence            4589999999999999999999999999997 467889999999999999999999996 34567999999999444479


Q ss_pred             eEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEEEEEecCC
Q 008305          524 MGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNLKWTPQLV  565 (570)
Q Consensus       524 lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~p~~~  565 (570)
                      ||.+.|.=+++......+.||.|...     -+|+|++++++.+.-.
T Consensus        83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~  129 (800)
T KOG2059|consen   83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ  129 (800)
T ss_pred             cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccC
Confidence            99999999998877778899999643     3899999999987643

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.16  E-value=3.2e-10  Score=93.80  Aligned_cols=94  Identities=41%  Similarity=0.789  Sum_probs=80.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-CceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ce
Q 008305          446 LSITVIAAENLPKVDLIGKADPFVVLQLKKA-GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DK  523 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~  523 (570)
                      +.+.|++|++|......+..+|||++++... ...++|+++.++.||.|||.|.|.+.......|.|+|||.+..+. .+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            6789999999998776577899999999743 157899999999999999999999976557889999999987764 69


Q ss_pred             eEEEEEeccccccCce
Q 008305          524 MGKCIMTLTRVMMEGE  539 (570)
Q Consensus       524 lG~~~i~l~~l~~~~~  539 (570)
                      +|.+.+++.++..+..
T Consensus        82 ~G~~~~~l~~~~~~~~   97 (101)
T smart00239       82 IGQVTIPLSDLLLGGR   97 (101)
T ss_pred             eEEEEEEHHHcccCcc
Confidence            9999999999876544

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02952 phosphoinositide phospholipase C

Probab=99.08  E-value=1.8e-09  Score=115.05  Aligned_cols=106  Identities=22%  Similarity=0.314  Sum_probs=86.7

Q ss_pred             ceEEEEEEEEecCCCCC------CCCCCCCcEEEEEEEe--CCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEE
Q 008305          263 CGTLDVKLVQAKELTNK------DLIGKSDPFVVIFVRP--LRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRV  334 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~------~~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v  334 (570)
                      ...|.|+|+.|.+++..      +.....||||++.+-.  ....+.+|+++.++.||+|||+|.|.+..++-..++|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46899999999987531      1123459999999973  223467899999999999999999999887767899999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeecc
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKD  372 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  372 (570)
                      +|+|.. +.++++|++.+|+..|..|-   .|++|...
T Consensus       549 ~D~D~~-~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~  582 (599)
T PLN02952        549 REYDMS-EKDDFGGQTCLPVSELRPGI---RSVPLHDK  582 (599)
T ss_pred             EecCCC-CCCCeEEEEEcchhHhcCCc---eeEeCcCC
Confidence            999987 78999999999999999876   47888643

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.08  E-value=2.1e-11  Score=126.59  Aligned_cols=129  Identities=33%  Similarity=0.588  Sum_probs=106.4

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC----------------------------ceEEeeeeCCCCCCe
Q 008305          262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD----------------------------RMKTSKTINNELNPI  313 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~----------------------------~~~~T~~~~~t~nP~  313 (570)
                      |.-.+.|.+.+|++|.++|.+|.+|||+...+.+..+                            -.+-|++++.|+||+
T Consensus       112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk  191 (1103)
T KOG1328|consen  112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK  191 (1103)
T ss_pred             CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence            5556778899999999999999999999987753210                            024588999999999


Q ss_pred             eecEEEEEEecCCCCeEEEEEEeCCCCC--------------------------------C---CCceEEEEEEEccccC
Q 008305          314 WNEHFEFTVEDASTQHLTVRVFDDEGPM--------------------------------L---APEIIGIAQIALKELE  358 (570)
Q Consensus       314 Wne~f~f~v~~~~~~~L~~~v~d~d~~~--------------------------------~---~d~~lG~~~i~l~~l~  358 (570)
                      |+|.|.|.+.+..++.+.+.+||+|.-.                                +   .|||+|+..||++++.
T Consensus       192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP  271 (1103)
T KOG1328|consen  192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP  271 (1103)
T ss_pred             hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence            9999999999999999999999988430                                2   3899999999999998


Q ss_pred             CCeeeEEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305          359 PGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPF  394 (570)
Q Consensus       359 ~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  394 (570)
                      ... .++||+|.+..   ...+..|.+++.+...-.
T Consensus       272 ~~G-ld~WFkLepRS---~~S~VqG~~~LklwLsT~  303 (1103)
T KOG1328|consen  272 PDG-LDQWFKLEPRS---DKSKVQGQVKLKLWLSTK  303 (1103)
T ss_pred             cch-HHHHhccCccc---ccccccceEEEEEEEeee
Confidence            754 68999998763   356789999999987644

>PLN02223 phosphoinositide phospholipase C

Probab=99.07  E-value=1.8e-09  Score=112.57  Aligned_cols=115  Identities=17%  Similarity=0.330  Sum_probs=90.2

Q ss_pred             ceEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEE
Q 008305          443 RGVLSITVIAAENLPKV-----DLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVY  514 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~-----~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~  514 (570)
                      ...|.|+|+.|++++..     +....+||||+|.+.+   ...+++|.+..++.||+|||+|+|.+..+.-+.|.|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            56899999999998521     2234579999999964   234567877777899999999999999888889999999


Q ss_pred             ECCCCCC-ceeEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEEEE
Q 008305          515 DHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNLKW  560 (570)
Q Consensus       515 d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~  560 (570)
                      |++..++ +++|+..+|+..+..+-   +.++|.+.     ..-+|.+.+.|
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW  536 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence            9998755 79999999999987654   45677433     24567777776

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.97  E-value=6.9e-09  Score=110.43  Aligned_cols=122  Identities=19%  Similarity=0.241  Sum_probs=92.0

Q ss_pred             ceEEEEEEEEecCCCCC------CCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEE
Q 008305          263 CGTLDVKLVQAKELTNK------DLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRV  334 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~------~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v  334 (570)
                      ..+|.|+|+.+.++...      +.....||||+|.+-..+  ...++|++..++.||.|||+|.|.+..++--.|+|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46899999999987421      222347999999997433  3357888889999999999999999888877899999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      +|+|.. ..|+++|++.+|+..|..|-.   .++|....+   ..-....|.+++.|
T Consensus       548 ~d~d~~-~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G---~~l~~~~Ll~~f~~  597 (598)
T PLN02230        548 HEHDIN-EKDDFGGQTCLPVSEIRQGIH---AVPLFNRKG---VKYSSTRLLMRFEF  597 (598)
T ss_pred             EECCCC-CCCCEEEEEEcchHHhhCccc---eEeccCCCc---CCCCCCeeEEEEEe
Confidence            999987 789999999999999998753   456654321   11123455555544

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.96  E-value=2.1e-09  Score=86.96  Aligned_cols=85  Identities=25%  Similarity=0.456  Sum_probs=71.0

Q ss_pred             EEEEEEEecCCCCCC---CCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCC
Q 008305          266 LDVKLVQAKELTNKD---LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPML  342 (570)
Q Consensus       266 L~V~V~~A~~L~~~~---~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~  342 (570)
                      |.|+|..|+++...+   +.+.+||||.++++  +..+.||++   +.||.|||+|.|.+.  ....+.+.|||....  
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~--   71 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--DVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGD--   71 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEEC--CEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCC--
Confidence            578999999998877   56789999999998  344677775   589999999999995  356899999999764  


Q ss_pred             CCceEEEEEEEccccCC
Q 008305          343 APEIIGIAQIALKELEP  359 (570)
Q Consensus       343 ~d~~lG~~~i~l~~l~~  359 (570)
                      ..-.+|..-+.++++..
T Consensus        72 ~~~Pi~llW~~~sdi~E   88 (109)
T cd08689          72 QPVPVGLLWLRLSDIAE   88 (109)
T ss_pred             eecceeeehhhHHHHHH
Confidence            66789999999998853

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02952 phosphoinositide phospholipase C

Probab=98.93  E-value=1.1e-08  Score=109.25  Aligned_cols=115  Identities=18%  Similarity=0.313  Sum_probs=89.3

Q ss_pred             ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEE
Q 008305          443 RGVLSITVIAAENLPKV------DLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDV  513 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~------~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V  513 (570)
                      ...|.|.|+.|++++..      +....+||||+|.+.+   ...+.+|+++.++.||+|||+|.|.+..+.-+.+.|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46899999999998532      1123469999999864   24567999999999999999999999887778899999


Q ss_pred             EECCCCCC-ceeEEEEEeccccccCceEEEEEEecC---CC--CeEEEEEEEE
Q 008305          514 YDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDG---TK--SGKLFLNLKW  560 (570)
Q Consensus       514 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~---~~--~G~i~l~~~~  560 (570)
                      +|++..+. +++|++.+|++.+..+-   +|++|.+   ..  .-.+.+.+.|
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f~~  598 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRFIF  598 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEEEe
Confidence            99988765 79999999999997654   4888853   33  2345555554

>PLN02228 Phosphoinositide phospholipase C

Probab=98.93  E-value=1.2e-08  Score=108.08  Aligned_cols=122  Identities=20%  Similarity=0.334  Sum_probs=96.1

Q ss_pred             ceEEEEEEEEeecCCC----C--CCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCee-eeEEEEEeecCCCcEEEEE
Q 008305          443 RGVLSITVIAAENLPK----V--DLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVW-NQTFDFVVEDGQHEMLILD  512 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~----~--~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w-~e~f~f~v~~~~~~~L~i~  512 (570)
                      ...|.|+|++|++|+.    .  +.....||||+|.+.+   ...+++|++++++.||.| ||.|+|.+..+.-+.|.|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            4579999999998742    1  1123479999999854   234678999888899999 9999999988878899999


Q ss_pred             EEECCCCCC-ceeEEEEEeccccccCceEEEEEEecC---C--CCeEEEEEEEEEecCCCC
Q 008305          513 VYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDG---T--KSGKLFLNLKWTPQLVLR  567 (570)
Q Consensus       513 V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~---~--~~G~i~l~~~~~p~~~~~  567 (570)
                      |+|++..+. +++|+..++++.+..+-+   .++|.+   .  ...+|.+.+.+.+..++|
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~G~~l~~atLfv~~~~~~~~~~~  567 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRAGKAYKNTRLLVSFALDPPYTFR  567 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCCCCCCCCeEEEEEEEEcCccccC
Confidence            999986654 799999999999965433   456633   2  257899999999988875

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.92  E-value=1.9e-08  Score=106.91  Aligned_cols=122  Identities=18%  Similarity=0.229  Sum_probs=91.0

Q ss_pred             ceEEEEEEEEecCCC----CC--CCCCCCCcEEEEEEEe--CCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEE
Q 008305          263 CGTLDVKLVQAKELT----NK--DLIGKSDPFVVIFVRP--LRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRV  334 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~----~~--~~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v  334 (570)
                      ...|.|+|+.+.++.    ..  +.....||||+|.+..  ....+.+|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            467999999998753    11  1123579999999973  234467899999989999999999999888777899999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      +|+|.. +.|+++|++.+|+..|..|-.   .++|....+   ..-....|.+.+.+
T Consensus       531 ~d~D~~-~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g---~~l~~a~Lfv~~~~  580 (581)
T PLN02222        531 HEYDMS-EKDDFGGQTCLPVWELSQGIR---AFPLHSRKG---EKYKSVKLLVKVEF  580 (581)
T ss_pred             EECCCC-CCCcEEEEEEcchhhhhCccc---eEEccCCCc---CCCCCeeEEEEEEe
Confidence            999987 789999999999999988753   456654321   11123455555543

>PLN02228 Phosphoinositide phospholipase C

Probab=98.92  E-value=2.2e-08  Score=106.28  Aligned_cols=124  Identities=21%  Similarity=0.262  Sum_probs=95.2

Q ss_pred             ceEEEEEEEEecCCCC---C---CCCCCCCcEEEEEEEeC--CCceEEeeeeCCCCCCee-ecEEEEEEecCCCCeEEEE
Q 008305          263 CGTLDVKLVQAKELTN---K---DLIGKSDPFVVIFVRPL--RDRMKTSKTINNELNPIW-NEHFEFTVEDASTQHLTVR  333 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~---~---~~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~W-ne~f~f~v~~~~~~~L~~~  333 (570)
                      ...|.|+|++|++|+.   .   +.....||||++.+...  ....++|+++.++.||.| ||+|.|.+..++-..|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            3479999999998731   1   11234799999999743  334678999988899999 9999999988877789999


Q ss_pred             EEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305          334 VFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCP  393 (570)
Q Consensus       334 v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  393 (570)
                      |+|+|.. +.|+++|++.+|+..|..|-.   .++|....   ...-..++|.+.+.+.+
T Consensus       510 V~D~d~~-~~d~figq~~lPv~~Lr~GYR---~VpL~~~~---G~~l~~atLfv~~~~~~  562 (567)
T PLN02228        510 VQDYDND-TQNDFAGQTCLPLPELKSGVR---AVRLHDRA---GKAYKNTRLLVSFALDP  562 (567)
T ss_pred             EEeCCCC-CCCCEEEEEEcchhHhhCCee---EEEccCCC---CCCCCCeEEEEEEEEcC
Confidence            9999987 789999999999999987643   45665432   12223567888888764

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.92  E-value=1.1e-08  Score=105.92  Aligned_cols=183  Identities=22%  Similarity=0.347  Sum_probs=132.0

Q ss_pred             eEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC---CCCCceEEEEEEEccccCCCeeeEEEEEeecccccc
Q 008305          300 MKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP---MLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQ  376 (570)
Q Consensus       300 ~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~---~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  376 (570)
                      ..+|.++.+.+||.|.+.|.+.......|.+++.++|.+..   ....+|+|++...++.+........-+.+.+     
T Consensus        42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~-----  116 (529)
T KOG1327|consen   42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP-----  116 (529)
T ss_pred             ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc-----
Confidence            35899999999999999998887777789999999997754   2567899999999998875432221111110     


Q ss_pred             CCCcceeEEEEEEEEEeccCCCCCCCCCCCCccchhhhhhhcccCchhhhhhccccccccCCCcccceEEEEEEEEeecC
Q 008305          377 RDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENL  456 (570)
Q Consensus       377 ~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L  456 (570)
                      ......|+|.+...-.                                                ..........++|++|
T Consensus       117 ~~~~~~g~iti~aee~------------------------------------------------~~~~~~~~~~~~~~~l  148 (529)
T KOG1327|consen  117 GKNAGSGTITISAEED------------------------------------------------ESDNDVVQFSFRAKNL  148 (529)
T ss_pred             CccCCcccEEEEeecc------------------------------------------------cccCceeeeeeeeeec
Confidence            1223456666654321                                                0012233345669999


Q ss_pred             CCCCCCCCCCcEEEEEEe--CC--CceEeCcccCCCCCCeeeeEEEEEee----cCCCcEEEEEEEECCCCCC-ceeEEE
Q 008305          457 PKVDLIGKADPFVVLQLK--KA--GNRAKTRVAHDTLNPVWNQTFDFVVE----DGQHEMLILDVYDHDTFGK-DKMGKC  527 (570)
Q Consensus       457 ~~~~~~g~~dpyv~v~~~--~~--~~~~kT~v~~~t~nP~w~e~f~f~v~----~~~~~~L~i~V~d~~~~~~-d~lG~~  527 (570)
                      .+++..+++|||..++-.  .+  ...++|.+++++++|.|.+ |.+...    ...+..+.+.+||++..++ +++|++
T Consensus       149 d~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~  227 (529)
T KOG1327|consen  149 DPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKF  227 (529)
T ss_pred             CcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEe
Confidence            999999999999998753  21  2368999999999999985 444432    2245679999999999888 799999


Q ss_pred             EEecccccc
Q 008305          528 IMTLTRVMM  536 (570)
Q Consensus       528 ~i~l~~l~~  536 (570)
                      ..++.++..
T Consensus       228 ~tt~~~~~~  236 (529)
T KOG1327|consen  228 QTTLSELQE  236 (529)
T ss_pred             cccHHHhcc
Confidence            999988853

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.89  E-value=1.4e-08  Score=108.09  Aligned_cols=115  Identities=22%  Similarity=0.339  Sum_probs=89.7

Q ss_pred             ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEE
Q 008305          443 RGVLSITVIAAENLPKV------DLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDV  513 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~------~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V  513 (570)
                      ...|.|+|+.+.+++..      +....+||||+|.+.+   ...+.+|++..++.||.|||.|+|.+..+.-+.|.|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46799999999987532      2223479999999964   23457888888899999999999999888888999999


Q ss_pred             EECCCCCC-ceeEEEEEeccccccCceEEEEEEecCCC-----CeEEEEEEEE
Q 008305          514 YDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK-----SGKLFLNLKW  560 (570)
Q Consensus       514 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~  560 (570)
                      +|++..++ +++|+..+|+..|..+-+   .++|.+..     .-+|.++|.|
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEEe
Confidence            99988654 799999999999875543   45664332     3467777766

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.87  E-value=8.9e-09  Score=83.37  Aligned_cols=85  Identities=22%  Similarity=0.406  Sum_probs=70.5

Q ss_pred             EEEEEEEeecCCCCC---CCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCc
Q 008305          446 LSITVIAAENLPKVD---LIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKD  522 (570)
Q Consensus       446 L~V~v~~a~~L~~~~---~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d  522 (570)
                      |.|+|+.|+|+....   ..+.+||||.+.+++ ..+.||++   +.||.|||.|.|.+.  ....+.+.|||+.....-
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved-~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~~   74 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVED-VERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQPV   74 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECC-EEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCCeec
Confidence            578999999998877   578899999999964 45788875   699999999999994  467899999998653224


Q ss_pred             eeEEEEEecccccc
Q 008305          523 KMGKCIMTLTRVMM  536 (570)
Q Consensus       523 ~lG~~~i~l~~l~~  536 (570)
                      .+|...+.++++..
T Consensus        75 Pi~llW~~~sdi~E   88 (109)
T cd08689          75 PVGLLWLRLSDIAE   88 (109)
T ss_pred             ceeeehhhHHHHHH
Confidence            79999999999873

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.87  E-value=1.5e-08  Score=107.72  Aligned_cols=121  Identities=21%  Similarity=0.325  Sum_probs=92.7

Q ss_pred             EEEEEEEEecCCCCCC----CCCCCCcEEEEEEEeCC--CceEEee-eeCCCCCCeeecEEEEEEecCCCCeEEEEEEeC
Q 008305          265 TLDVKLVQAKELTNKD----LIGKSDPFVVIFVRPLR--DRMKTSK-TINNELNPIWNEHFEFTVEDASTQHLTVRVFDD  337 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~----~~g~~dpyv~v~l~~~~--~~~~~T~-~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~  337 (570)
                      +|.|+|+.++++....    ....+||||.|++...+  ....+|+ +..|+-||.|+|+|+|.+..++--.|+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            6999999999766532    12457999999987332  2357888 668889999999999999999888899999999


Q ss_pred             CCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                      |.. ++|+|+|+..+|+..|..|-.+   ++|....   +..-...+|.+.+.+.
T Consensus       697 d~~-~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~---G~~~~~asLfv~i~~~  744 (746)
T KOG0169|consen  697 DYI-GKDDFIGQTTLPVSELRQGYRH---VPLLSRE---GEALSSASLFVRIAIV  744 (746)
T ss_pred             CCC-CcccccceeeccHHHhhCceee---eeecCCC---CccccceeEEEEEEEe
Confidence            998 8899999999999999987533   5564331   1223445666666653

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.84  E-value=3.3e-08  Score=105.14  Aligned_cols=115  Identities=21%  Similarity=0.314  Sum_probs=89.1

Q ss_pred             ceEEEEEEEEeecCCC----C--CCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEE
Q 008305          443 RGVLSITVIAAENLPK----V--DLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDV  513 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~----~--~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V  513 (570)
                      ...|.|+|+.+++++.    .  +.....||||+|.+.+   ...+.+|+++.++.||.|||.|+|.+..+.-+.|.|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            4679999999998531    1  1224579999999953   34567999999999999999999999888788999999


Q ss_pred             EECCCCCC-ceeEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEEEE
Q 008305          514 YDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNLKW  560 (570)
Q Consensus       514 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~  560 (570)
                      +|++..+. +++|+..+|++.+..+-+   .++|.+.     ..-.+.+.+.|
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g~~l~~a~Lfv~~~~  580 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHSRKGEKYKSVKLLVKVEF  580 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCccc---eEEccCCCcCCCCCeeEEEEEEe
Confidence            99987654 799999999999875543   4566433     23467777766

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.79  E-value=3e-08  Score=105.58  Aligned_cols=115  Identities=21%  Similarity=0.354  Sum_probs=90.5

Q ss_pred             EEEEEEEEeecCCCCCC----CCCCCcEEEEEEeC---CCceEeCc-ccCCCCCCeeeeEEEEEeecCCCcEEEEEEEEC
Q 008305          445 VLSITVIAAENLPKVDL----IGKADPFVVLQLKK---AGNRAKTR-VAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDH  516 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~----~g~~dpyv~v~~~~---~~~~~kT~-v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~  516 (570)
                      .|.|.|+++++++....    ....||||.|.+.+   .....+|+ +..++-||.|+|+|+|.+..+.-+-|.|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            89999999997765432    24479999999854   33567899 455679999999999999999899999999999


Q ss_pred             CCCCC-ceeEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEEEEEe
Q 008305          517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNLKWTP  562 (570)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~p  562 (570)
                      +..++ ||+|+.++|++++..+-+   -++|.+.     ..-.|.+.++|.+
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyR---hVpL~~~~G~~~~~asLfv~i~~~~  745 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYR---HVPLLSREGEALSSASLFVRIAIVE  745 (746)
T ss_pred             CCCCcccccceeeccHHHhhCcee---eeeecCCCCccccceeEEEEEEEec
Confidence            99985 799999999999865543   3455432     3567788887754

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.79  E-value=2.1e-08  Score=102.17  Aligned_cols=122  Identities=29%  Similarity=0.481  Sum_probs=100.7

Q ss_pred             eEEEEEEEEecCCCCCCCC-CCCCcEEEEEEEeCCCceEEeeeeCCCCCCeee-cEEEEEEecC--CCCeEEEEEEeCCC
Q 008305          264 GTLDVKLVQAKELTNKDLI-GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWN-EHFEFTVEDA--STQHLTVRVFDDEG  339 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wn-e~f~f~v~~~--~~~~L~~~v~d~d~  339 (570)
                      |.|.|+|..|++|+.+|.. ...|.||+++++   ...++|.+..+++||.|| +.|.|.|.+.  ....|.+++.|+|.
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~---n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt   79 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFA---NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT   79 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEec---ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence            6889999999999998854 467999999998   678999999999999999 7889998764  34569999999999


Q ss_pred             CCCCCceEEEEEEEccccCC----------CeeeEEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305          340 PMLAPEIIGIAQIALKELEP----------GKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPF  394 (570)
Q Consensus       340 ~~~~d~~lG~~~i~l~~l~~----------~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  394 (570)
                      . +.+|-||.+.|++..|.-          +.....|+++....     ...+|+|.+-+...-+
T Consensus        80 y-sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-----hgirgeinvivkvdlf  138 (1169)
T KOG1031|consen   80 Y-SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-----HGIRGEINVIVKVDLF  138 (1169)
T ss_pred             c-ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-----ccccceeEEEEEEeeh
Confidence            9 999999999999998742          34567899997553     3468888877665444

>PLN02352 phospholipase D epsilon

Probab=98.76  E-value=5.6e-08  Score=105.51  Aligned_cols=122  Identities=16%  Similarity=0.305  Sum_probs=93.9

Q ss_pred             CceEEEEEEEEecCCCCC----CCC-CCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEe
Q 008305          262 PCGTLDVKLVQAKELTNK----DLI-GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFD  336 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~----~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d  336 (570)
                      -.|.|.++|.+|+-+...    +.. ...||||.+.++  +.+..||   .+..||+|||+|.+.+.......+.|.|.|
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG--NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeC--CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence            479999999999843321    111 123999999998  4566777   566699999999999987764589999988


Q ss_pred             CCCCCCCCceEEEEEEEccccCCCee-eEEEEEeeccccccCCCcceeEEEEEEEEEeccCC
Q 008305          337 DEGPMLAPEIIGIAQIALKELEPGKV-KDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTE  397 (570)
Q Consensus       337 ~d~~~~~d~~lG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~  397 (570)
                      .      ..+||.+.+|+.++..+.. .+.|+++....+  +... ..+|+++++|.|....
T Consensus        83 ~------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~--~p~~-~~~~~~~~~~~~~~~~  135 (758)
T PLN02352         83 K------CSILGRFHIQAHQIVTEASFINGFFPLIMENG--KPNP-ELKLRFMLWFRPAELE  135 (758)
T ss_pred             C------CeEEEEEEEEHHHhhCCCcccceEEEcccCCC--CCCC-CCEEEEEEEEEEhhhC
Confidence            2      4689999999999998865 899999976532  1222 2699999999998665

>PLN02352 phospholipase D epsilon

Probab=98.75  E-value=7.4e-08  Score=104.57  Aligned_cols=119  Identities=18%  Similarity=0.295  Sum_probs=93.1

Q ss_pred             ccceEEEEEEEEeecCCCC----CC-CCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEE
Q 008305          441 IVRGVLSITVIAAENLPKV----DL-IGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYD  515 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~----~~-~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d  515 (570)
                      .--|.|.++|++|+-+...    +. ....+|||.|.+++ ....||   .+..||.|+|+|.+.|.......+.|.|+|
T Consensus         7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~   82 (758)
T PLN02352          7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN-KKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT   82 (758)
T ss_pred             ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCC-cEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence            3468999999999843221    11 11239999999974 567788   456699999999999987765689999999


Q ss_pred             CCCCCCceeEEEEEeccccccCce-EEEEEEecCCC----C-eEEEEEEEEEecCCCC
Q 008305          516 HDTFGKDKMGKCIMTLTRVMMEGE-IQDSFHIDGTK----S-GKLFLNLKWTPQLVLR  567 (570)
Q Consensus       516 ~~~~~~d~lG~~~i~l~~l~~~~~-~~~w~~L~~~~----~-G~i~l~~~~~p~~~~~  567 (570)
                          +..+||.+.|+..++..++. .++||++.+..    . .+|+++++|.|+...+
T Consensus        83 ----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  136 (758)
T PLN02352         83 ----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELEP  136 (758)
T ss_pred             ----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhCc
Confidence                35799999999999998866 89999985431    3 4999999999987654

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.73  E-value=5.4e-09  Score=109.09  Aligned_cols=98  Identities=32%  Similarity=0.464  Sum_probs=84.7

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC----ceEEeeeeCCCCCCeeecEEEEEEecC----CCCeEEE
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD----RMKTSKTINNELNPIWNEHFEFTVEDA----STQHLTV  332 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~----~~~~T~~~~~t~nP~Wne~f~f~v~~~----~~~~L~~  332 (570)
                      ...-.|.|.|+.|+++.+-|.+|.+||||++.+.|...    ..++|+++..|+||+|+|+|+|.|...    +.-.+.|
T Consensus       944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen  944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred             ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence            45668999999999999999999999999999985321    257999999999999999999998532    2346899


Q ss_pred             EEEeCCCCCCCCceEEEEEEEccccCC
Q 008305          333 RVFDDEGPMLAPEIIGIAQIALKELEP  359 (570)
Q Consensus       333 ~v~d~d~~~~~d~~lG~~~i~l~~l~~  359 (570)
                      +|+|+|-. +.+||-|++.+.|+++..
T Consensus      1024 TVMDHD~L-~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1024 TVMDHDYL-RSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             Eeecccee-cccccchHHHHhhCCCCC
Confidence            99999999 999999999999998864

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.70  E-value=1.7e-08  Score=110.38  Aligned_cols=107  Identities=23%  Similarity=0.284  Sum_probs=90.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEE---eecCCCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFV---VEDGQHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~---v~~~~~~~L~i~V~d~  516 (570)
                      .|.|+|.|+.|++|+.......+||||+.++..   +..+.||+++++|+||.|||...+.   ........|.++||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            589999999999997666567899999999953   3457899999999999999987765   2333567899999998


Q ss_pred             CCCCC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305          517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT  549 (570)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (570)
                      +.... .++|.+.|+|.++...++...||.|...
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence            88765 5999999999999888888899999764

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.65  E-value=8.4e-08  Score=101.45  Aligned_cols=117  Identities=26%  Similarity=0.442  Sum_probs=90.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceE-eCcccCCCCCCeee-eEEEEEeecCCCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRA-KTRVAHDTLNPVWN-QTFDFVVEDGQHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~-kT~v~~~t~nP~w~-e~f~f~v~~~~~~~L~i~V~d~~  517 (570)
                      .-.|.|.|+.|++|+... .|...|||+|.+-+   ...++ +|.++.+++||+|| |.|+|.+.+|.-+.|.|.|+|.|
T Consensus      1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred             ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence            357899999999999654 35667999999843   22344 44556678999999 99999999999999999999999


Q ss_pred             CCCC-ceeEEEEEeccccccCceEEEEEEecCCCCeE-----EEEEEEEEec
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGK-----LFLNLKWTPQ  563 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~-----i~l~~~~~p~  563 (570)
                      .+++ .|||++..|+..+..+   -+.++|++.-+.+     +.+.++..|+
T Consensus      1143 mfs~~~FiaqA~yPv~~ik~G---fRsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG---FRSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred             ccCCcceeeeeecchhhhhcc---ceeeecccCchhhhhhhhheeeeEeccc
Confidence            9988 6999999999998643   3456787764433     3445555444

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.65  E-value=1.3e-07  Score=100.02  Aligned_cols=125  Identities=23%  Similarity=0.338  Sum_probs=93.7

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEe---CCCceEEeeeeCCCCCCeee-cEEEEEEecCCCCeEEEEEEeCCC
Q 008305          264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRP---LRDRMKTSKTINNELNPIWN-EHFEFTVEDASTQHLTVRVFDDEG  339 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~---~~~~~~~T~~~~~t~nP~Wn-e~f~f~v~~~~~~~L~~~v~d~d~  339 (570)
                      -.|.|.|+.|++|+... .|..-|||++.+-.   ..++.++|.+..|++||+|| |.|+|.+.+|+--.|+|.|+|.|-
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            36789999999998543 35567999999863   22345667778999999999 999999999988889999999999


Q ss_pred             CCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEeccC
Q 008305          340 PMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGT  396 (570)
Q Consensus       340 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~  396 (570)
                      + +...|||++..|+..+..|-   ..++|.+..   .+.-.-..|.+.+...|...
T Consensus      1144 f-s~~~FiaqA~yPv~~ik~Gf---RsVpLkN~y---SEdlELaSLLv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1144 F-SDPNFLAQATYPVKAIKSGF---RSVPLKNGY---SEDLELASLLVFIEMRPVLE 1193 (1267)
T ss_pred             c-CCcceeeeeecchhhhhccc---eeeecccCc---hhhhhhhhheeeeEeccccC
Confidence            9 77789999999999998763   224553221   11123455667777766543

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.64  E-value=1.1e-07  Score=96.96  Aligned_cols=115  Identities=34%  Similarity=0.516  Sum_probs=94.3

Q ss_pred             ceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCCCceEeCcccCCCCCCeeee-EEEEEeec--CCCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVDLI-GKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQ-TFDFVVED--GQHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e-~f~f~v~~--~~~~~L~i~V~d~~~  518 (570)
                      .|.|-|.|..|++||.+|.. ...|.||++.+.  +..+||.+..+++||.||. =|.|.+.+  ..++.|.|.+.|++.
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~--n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt   79 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFA--NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT   79 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEec--ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence            37889999999999998863 457999999994  5789999999999999995 48888864  467889999999999


Q ss_pred             CCC-ceeEEEEEeccccccCc----------eEEEEEEecCC---CCeEEEEEEE
Q 008305          519 FGK-DKMGKCIMTLTRVMMEG----------EIQDSFHIDGT---KSGKLFLNLK  559 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~----------~~~~w~~L~~~---~~G~i~l~~~  559 (570)
                      .+. |.||.+.|+++.+..+.          -+..||++-+.   -+|+|.+-++
T Consensus        80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk  134 (1169)
T KOG1031|consen   80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK  134 (1169)
T ss_pred             cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence            876 89999999999876322          34789998654   4788887554

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.40  E-value=2.1e-07  Score=102.23  Aligned_cols=108  Identities=25%  Similarity=0.363  Sum_probs=90.3

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEE---EecCCCCeEEEEEEe
Q 008305          262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFT---VEDASTQHLTVRVFD  336 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~---v~~~~~~~L~~~v~d  336 (570)
                      ..|+|.|-|..|++|.--.-...+||||+.++.|..++  +.||+++++|.||.|||...+.   ........|.+.||.
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            36889999999999965544567999999999976654  5789999999999999988766   223345689999999


Q ss_pred             CCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          337 DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       337 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      .+.. ..+.++|.+.++|.++...+....||.|.
T Consensus      1602 ~~~~-~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGGL-LENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred             ccce-eeeeeeeeeecchhhcchhhhhcceeecc
Confidence            9998 89999999999999998777677999984

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.21  E-value=1.9e-06  Score=72.10  Aligned_cols=101  Identities=19%  Similarity=0.349  Sum_probs=76.2

Q ss_pred             EEEEEEEeecCCCCC-------------CCCCCCcEEEEEEe--CCCceEeCcccCCCCCCeeeeEEEEEee--------
Q 008305          446 LSITVIAAENLPKVD-------------LIGKADPFVVLQLK--KAGNRAKTRVAHDTLNPVWNQTFDFVVE--------  502 (570)
Q Consensus       446 L~V~v~~a~~L~~~~-------------~~g~~dpyv~v~~~--~~~~~~kT~v~~~t~nP~w~e~f~f~v~--------  502 (570)
                      |.|.|++|.+|...-             ..-..|+||++.+.  .+....+|+++.++--|.|+..++|+|.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            467888888886421             01125899999863  3556789999999999999999999985        


Q ss_pred             c-------CCCcEEEEEEEECCCC----------CCc-eeEEEEEeccccccCc-eEEEEEEe
Q 008305          503 D-------GQHEMLILDVYDHDTF----------GKD-KMGKCIMTLTRVMMEG-EIQDSFHI  546 (570)
Q Consensus       503 ~-------~~~~~L~i~V~d~~~~----------~~d-~lG~~~i~l~~l~~~~-~~~~w~~L  546 (570)
                      .       .....+.++||+....          .+| .||.+.||+.+++.+. .+..||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1       1345799999987532          135 7999999999999665 57899975

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=98.09  E-value=1.7e-05  Score=82.90  Aligned_cols=229  Identities=17%  Similarity=0.279  Sum_probs=156.7

Q ss_pred             CCCCceecCC-------ccchHHHHHHHHhHhHhH--HHHH----HHHHHHhHHHHHhhcCC-CCcceEEEeEEecCCCC
Q 008305           58 FYPPWVVFQQ-------RQKLNWLNYQLDKLWPFI--NEAA----SELIRSNVEPILEQYRP-SILASLSFSKLTLGTVA  123 (570)
Q Consensus        58 ~~p~w~~~~~-------~E~~eWlN~~l~~~Wp~~--~~~~----~~~~~~~~~~~l~~~~p-~~l~~i~~~~~~lG~~p  123 (570)
                      ..|.|.....       ...|-.+|.+++.++...  ...+    -+.+...+.+.+....- ..+..+.+.++-+|...
T Consensus        81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f  160 (1051)
T KOG3532|consen   81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF  160 (1051)
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence            4677775432       124566777777776532  2233    33344444455554433 47999999999999999


Q ss_pred             CeEeEEEEEeccC------------------C-----CceeEEEEEEEEcCCCcEEEEEeeeeeeeeeEEEEEEEEEEEE
Q 008305          124 PQFTGVAIVESES------------------G-----EEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF  180 (570)
Q Consensus       124 P~i~~i~~~~~~~------------------~-----~~~~~~d~~~~~~~~~~i~l~~~~~~g~~~~v~v~~~~~~g~l  180 (570)
                      |.+++.+++.-+.                  +     ...+.+=+++.|.|+..-++++....+....++|+..+++|.+
T Consensus       161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~  240 (1051)
T KOG3532|consen  161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV  240 (1051)
T ss_pred             ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence            9999999986220                  0     1223445789999998777777766677777889999999999


Q ss_pred             EEEeeeCCCCCCcccEEEEEeccCcceeEEEEE--eccccccCcchHHHHHHHHHHHHHhhcccccee--eEecCC---C
Q 008305          181 RLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKV--VGGDISSIPGISDAIEETIIDAIEDSITWPVRQ--IIPILP---G  253 (570)
Q Consensus       181 rv~l~pl~~~~P~~~~~~~~f~~~P~id~~l~~--~g~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~--~~~~~~---~  253 (570)
                      |+.+.  ..+.-|+   +++|+..|.+....+.  +|-.+-  --+.+.|.+.++.++.+..+||++-  ..|...   +
T Consensus       241 r~~~~--r~py~hw---~~sf~G~P~~e~di~s~~qg~qLQ--~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~  313 (1051)
T KOG3532|consen  241 RVILS--RQPYHHW---TFSFVGQPIFETDINSQIQGHQLQ--RLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF  313 (1051)
T ss_pred             eEEEE--eccceee---eeeeccCchhhhhhHHHHHHHHHH--HHhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence            99985  6677777   9999999976655543  331111  1244577888888889999999964  233322   1


Q ss_pred             -----CCCCcccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEe
Q 008305          254 -----DYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRP  295 (570)
Q Consensus       254 -----~~~~~~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~  295 (570)
                           ..+.....+.|.+.|++.++..|...  .++..-||.+++.+
T Consensus       314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~  358 (1051)
T KOG3532|consen  314 QASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES  358 (1051)
T ss_pred             ccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence                 11222335889999999999988654  47788899998874

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=8.2e-06  Score=78.87  Aligned_cols=90  Identities=22%  Similarity=0.324  Sum_probs=75.2

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEEeC
Q 008305          262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVFDD  337 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~d~  337 (570)
                      ...-|.|++++|..|...|.+|.+||||..++.+..+.  +++|.+.+++.||++|+.|.|.+..  .....+.+.|||+
T Consensus       231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence            45678899999999999999999999999999865444  5788889999999999999998853  3456799999999


Q ss_pred             CCCCCCCceEEEEEE
Q 008305          338 EGPMLAPEIIGIAQI  352 (570)
Q Consensus       338 d~~~~~d~~lG~~~i  352 (570)
                      +.. ...+++|-+..
T Consensus       311 ~~G-~s~d~~GG~~~  324 (362)
T KOG1013|consen  311 DIG-KSNDSIGGSML  324 (362)
T ss_pred             CCC-cCccCCCcccc
Confidence            987 77888886443

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.97  E-value=0.0012  Score=66.47  Aligned_cols=258  Identities=15%  Similarity=0.185  Sum_probs=149.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEec-------CCCCeEEEEEEeCC
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED-------ASTQHLTVRVFDDE  338 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~-------~~~~~L~~~v~d~d  338 (570)
                      +.|+|++|++.+...   ...-.+..+++   +....|..+..+..|.||......+..       .....+++++|-.+
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~n---g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~   75 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFN---GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD   75 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeC---CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence            678999999998762   23456677776   777888889999999999988887742       23456999999988


Q ss_pred             CCCCCCceEEEEEEEcccc---CCC--eeeEEEEEeeccccccCCCcceeEEEEEEEEEeccCCCCCC--------CCCC
Q 008305          339 GPMLAPEIIGIAQIALKEL---EPG--KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLK--------NPFN  405 (570)
Q Consensus       339 ~~~~~d~~lG~~~i~l~~l---~~~--~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~--------~~~~  405 (570)
                      ...+..+.+|.+.++|...   ..+  .....|++|.....  +-.+.+-+|.+.+............        .|..
T Consensus        76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~--~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~  153 (340)
T PF12416_consen   76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS--KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPR  153 (340)
T ss_pred             CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc--ccccCCccEEEEEEEeccccccCCccccccccCCCcc
Confidence            3326889999999999998   544  45778999976421  1223455677777665332211000        0000


Q ss_pred             CCccchhhhhhhcccCch-hhhhhccccccccCCCcccceEEEEEEEEeecCCCCC----C--CCCCCcEEEEEEeCCCc
Q 008305          406 SDYSLTTLEKSLKSETSR-AEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVD----L--IGKADPFVVLQLKKAGN  478 (570)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~----~--~g~~dpyv~v~~~~~~~  478 (570)
                      ... ..+.........-. ....+.+-..-.........-.|.|++..|+||...-    .  .+...-|...++-+  .
T Consensus       154 ~~~-~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG--n  230 (340)
T PF12416_consen  154 QGH-VPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG--N  230 (340)
T ss_pred             cCC-CcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC--c
Confidence            000 00000000000000 0000000000000111234568999999999997541    1  12234455555543  2


Q ss_pred             eEeCcccCCCCCCeee--eEEEEEeecC---------CCcEEEEEEEECCCCCCceeEEEEEeccccccCc
Q 008305          479 RAKTRVAHDTLNPVWN--QTFDFVVEDG---------QHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEG  538 (570)
Q Consensus       479 ~~kT~v~~~t~nP~w~--e~f~f~v~~~---------~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~  538 (570)
                      ...|...+...+|.|.  +.-.+.++..         ....|.|.++..    +..||.+.+++..++...
T Consensus       231 ~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g----~~~Lg~~~v~l~~Ll~~~  297 (340)
T PF12416_consen  231 DVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG----NQSLGSTSVPLQPLLPKD  297 (340)
T ss_pred             EeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC----CcEEEEEEEEhhhccCCC
Confidence            3345566677788774  2222554311         234677777763    358999999999997553

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.90  E-value=1.2e-05  Score=62.39  Aligned_cols=97  Identities=18%  Similarity=0.231  Sum_probs=69.7

Q ss_pred             EEEEEEeecCCCCCCC-CCCCcEEEEEEe-CCCceEeCcccCCCCCCeeeeEEEEEee--cCCCcEEEEEEEECCCCCCc
Q 008305          447 SITVIAAENLPKVDLI-GKADPFVVLQLK-KAGNRAKTRVAHDTLNPVWNQTFDFVVE--DGQHEMLILDVYDHDTFGKD  522 (570)
Q Consensus       447 ~V~v~~a~~L~~~~~~-g~~dpyv~v~~~-~~~~~~kT~v~~~t~nP~w~e~f~f~v~--~~~~~~L~i~V~d~~~~~~d  522 (570)
                      -+++.+|+||.-...- ..+.-|++-.+. .+...+||.....+.||+|.|+|.|.+.  +..+-.|.|.|+. .+-++.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe   80 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKR   80 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccc
Confidence            4788999999754432 234456664442 2345789999999999999999999885  3456679999998 444457


Q ss_pred             eeEEEEEeccccccCceEEEEEE
Q 008305          523 KMGKCIMTLTRVMMEGEIQDSFH  545 (570)
Q Consensus       523 ~lG~~~i~l~~l~~~~~~~~w~~  545 (570)
                      .||.|.+.++++- ..+..+|.+
T Consensus        81 ~iG~~sL~l~s~g-eeE~~HW~e  102 (103)
T cd08684          81 TIGECSLSLRTLS-TQETDHWLE  102 (103)
T ss_pred             eeeEEEeecccCC-HHHhhhhhc
Confidence            9999999999873 334456653

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PLN02964 phosphatidylserine decarboxylase

Probab=97.89  E-value=2e-05  Score=85.46  Aligned_cols=88  Identities=16%  Similarity=0.304  Sum_probs=75.1

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEE-EEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCC
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVV-IFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEG  339 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~-v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~  339 (570)
                      .-.|+..+++++|+    ++   ..|+|.. ++++   .++++|.+.++|+||+||+...|.+........++.|||.+.
T Consensus        51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g---~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (644)
T PLN02964         51 DFSGIALLTLVGAE----MK---FKDKWLACVSFG---EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR  120 (644)
T ss_pred             cccCeEEEEeehhh----hc---cCCcEEEEEEec---ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence            46799999999997    33   3688764 5555   889999999999999999999999987777778999999999


Q ss_pred             CCCCCceEEEEEEEccccCC
Q 008305          340 PMLAPEIIGIAQIALKELEP  359 (570)
Q Consensus       340 ~~~~d~~lG~~~i~l~~l~~  359 (570)
                      + +.++++|.|++++.++..
T Consensus       121 ~-s~n~lv~~~e~~~t~f~~  139 (644)
T PLN02964        121 L-SKNTLVGYCELDLFDFVT  139 (644)
T ss_pred             C-CHHHhhhheeecHhhccH
Confidence            9 999999999998877653

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.83  E-value=1.6e-05  Score=61.74  Aligned_cols=97  Identities=16%  Similarity=0.244  Sum_probs=69.1

Q ss_pred             EEEEEEecCCCCCCCCC-CCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEEeCCCCCCC
Q 008305          267 DVKLVQAKELTNKDLIG-KSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVFDDEGPMLA  343 (570)
Q Consensus       267 ~V~V~~A~~L~~~~~~g-~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~d~d~~~~~  343 (570)
                      .++|+.|++|.-...-| .+.-|++--+.-.+....+|++..+..||+|+|+|.|.+..  ...-.|.|.|+.  .. .+
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~-~R   78 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QT-PR   78 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cC-Cc
Confidence            58999999997654333 34456654333223446789999999999999999998753  344568888888  33 57


Q ss_pred             CceEEEEEEEccccCCCeeeEEEE
Q 008305          344 PEIIGIAQIALKELEPGKVKDVWL  367 (570)
Q Consensus       344 d~~lG~~~i~l~~l~~~~~~~~w~  367 (570)
                      ...||.|.+.++++-... .+.|.
T Consensus        79 Ke~iG~~sL~l~s~geeE-~~HW~  101 (103)
T cd08684          79 KRTIGECSLSLRTLSTQE-TDHWL  101 (103)
T ss_pred             cceeeEEEeecccCCHHH-hhhhh
Confidence            889999999999886433 34454

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.67  E-value=5.6e-05  Score=74.48  Aligned_cols=108  Identities=21%  Similarity=0.320  Sum_probs=84.1

Q ss_pred             ccceEEEEEEEEeecCCCCCC-CCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEE-
Q 008305          441 IVRGVLSITVIAAENLPKVDL-IGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYD-  515 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~-~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d-  515 (570)
                      ...|.+.|.|++|++|..+.. ...++|||+|++-.+.   .+.+|+...+|++|.+.+...|.-. +....|.+.||- 
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD  344 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence            457899999999999976543 2368999999985322   3568888899999999888877654 567789999995 


Q ss_pred             CCCCCC-ceeEEEEEeccccccCc-eEEEEEEecCC
Q 008305          516 HDTFGK-DKMGKCIMTLTRVMMEG-EIQDSFHIDGT  549 (570)
Q Consensus       516 ~~~~~~-d~lG~~~i~l~~l~~~~-~~~~w~~L~~~  549 (570)
                      +.+... .|+|.+++-+.++.... ....||+|-+.
T Consensus       345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs  380 (405)
T KOG2060|consen  345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS  380 (405)
T ss_pred             ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence            444433 59999999999998666 56899999654

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.66  E-value=7.2e-05  Score=62.78  Aligned_cols=104  Identities=19%  Similarity=0.390  Sum_probs=75.0

Q ss_pred             EEEEEEEecCCCCCC---------C----CCCCCcEEEEEEEeC-CCceEEeeeeCCCCCCeeecEEEEEEe--------
Q 008305          266 LDVKLVQAKELTNKD---------L----IGKSDPFVVIFVRPL-RDRMKTSKTINNELNPIWNEHFEFTVE--------  323 (570)
Q Consensus       266 L~V~V~~A~~L~~~~---------~----~g~~dpyv~v~l~~~-~~~~~~T~~~~~t~nP~Wne~f~f~v~--------  323 (570)
                      |.|.|++|.+|+...         .    .-.-++||++.+.-. +++..+|+++.++-.|+|+.+++|.+.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            457788888886421         1    012589999997642 345678999999999999999999874        


Q ss_pred             c-------CCCCeEEEEEEeCCCC---------CCCCceEEEEEEEccccCCC-eeeEEEEEe
Q 008305          324 D-------ASTQHLTVRVFDDEGP---------MLAPEIIGIAQIALKELEPG-KVKDVWLKL  369 (570)
Q Consensus       324 ~-------~~~~~L~~~v~d~d~~---------~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L  369 (570)
                      +       .+...+.++||+....         ..+|-+||.+.||+.+|... .....||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1       1345789999987543         13567899999999999754 335677763

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.60  E-value=6.5e-05  Score=74.63  Aligned_cols=125  Identities=15%  Similarity=0.158  Sum_probs=95.1

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEe--CCCceEEeeeeCCCCCCeeecEEEEEEecC-----------CCCe
Q 008305          263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRP--LRDRMKTSKTINNELNPIWNEHFEFTVEDA-----------STQH  329 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~-----------~~~~  329 (570)
                      .-.|.+.|+++.+++........|-|+.+.+.-  +..++.+|.++++|.+|.|+|.|.+.+...           ....
T Consensus       366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g  445 (523)
T KOG3837|consen  366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG  445 (523)
T ss_pred             hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence            345677788888876554223357788877642  234577899999999999999999988641           1234


Q ss_pred             EEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          330 LTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       330 L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                      +.|++|+...+..+|.++|.|.+.+.-|.........++|.+     ......|.|.+++...
T Consensus       446 ~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D-----GRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD-----GRKAVGGKLEVKVRIR  503 (523)
T ss_pred             eeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc-----cccccCCeeEEEEEEe
Confidence            899999999887899999999999999987766666777753     2456789999998875

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.57  E-value=7.1e-05  Score=74.38  Aligned_cols=121  Identities=17%  Similarity=0.253  Sum_probs=95.0

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEe---CCCceEeCcccCCCCCCeeeeEEEEEeecCC-----------Cc
Q 008305          442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLK---KAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ-----------HE  507 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-----------~~  507 (570)
                      ....|.+.|.++.+++........|.|+++.+.   +...+.+|.+++.|.+|.|+|.|...+....           ..
T Consensus       365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~  444 (523)
T KOG3837|consen  365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL  444 (523)
T ss_pred             chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence            345678888899988876543446789998863   3446778999999999999999999986421           12


Q ss_pred             EEEEEEEECCCCC--CceeEEEEEeccccccCceEEEEEEecCC---CCeEEEEEEEEEe
Q 008305          508 MLILDVYDHDTFG--KDKMGKCIMTLTRVMMEGEIQDSFHIDGT---KSGKLFLNLKWTP  562 (570)
Q Consensus       508 ~L~i~V~d~~~~~--~d~lG~~~i~l~~l~~~~~~~~w~~L~~~---~~G~i~l~~~~~p  562 (570)
                      -+.|+|+.+..+-  +.++|.+.+.|..|....++...++|.+.   -.|++.++++.+.
T Consensus       445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~  504 (523)
T KOG3837|consen  445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQ  504 (523)
T ss_pred             CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEec
Confidence            4899999998773  35999999999999888888888998543   3799999998864

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.41  E-value=9.6e-05  Score=72.88  Aligned_cols=112  Identities=22%  Similarity=0.343  Sum_probs=87.0

Q ss_pred             cCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEe
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLI-GKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFD  336 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~-g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d  336 (570)
                      ....|.|.|.|++|++|..+... ..++|||+|++.+.+..  +.+|+...+|++|.+.+...|.-. +....|.+.||.
T Consensus       265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~g  343 (405)
T KOG2060|consen  265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWG  343 (405)
T ss_pred             hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEec
Confidence            35789999999999999876432 36899999999854332  467888889998888777666654 455689999985


Q ss_pred             -CCCCCCCCceEEEEEEEccccCCCe-eeEEEEEeeccc
Q 008305          337 -DEGPMLAPEIIGIAQIALKELEPGK-VKDVWLKLVKDV  373 (570)
Q Consensus       337 -~d~~~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~  373 (570)
                       +.+. ..+.|+|.+.+-+.+|.... ..-.||+|....
T Consensus       344 dygRm-d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss  381 (405)
T KOG2060|consen  344 DYGRM-DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS  381 (405)
T ss_pred             ccccc-chHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence             5555 67789999999999997665 678899997543

>PLN02964 phosphatidylserine decarboxylase

Probab=97.30  E-value=0.00038  Score=75.66  Aligned_cols=90  Identities=19%  Similarity=0.366  Sum_probs=72.6

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCC
Q 008305          441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFG  520 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~  520 (570)
                      .-+|+..+++++|+    ++   ..|+|..+..- +.+.+||.+.++|.||+||+...|.+........+|.|||.+.++
T Consensus        51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~-g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  122 (644)
T PLN02964         51 DFSGIALLTLVGAE----MK---FKDKWLACVSF-GEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS  122 (644)
T ss_pred             cccCeEEEEeehhh----hc---cCCcEEEEEEe-cceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence            45789999999997    22   35887655433 468999999999999999999999886555555799999999987


Q ss_pred             C-ceeEEEEEeccccccCc
Q 008305          521 K-DKMGKCIMTLTRVMMEG  538 (570)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~  538 (570)
                      . +++|.+.++|.++...+
T Consensus       123 ~n~lv~~~e~~~t~f~~kq  141 (644)
T PLN02964        123 KNTLVGYCELDLFDFVTQE  141 (644)
T ss_pred             HHHhhhheeecHhhccHHH
Confidence            7 69999999998877543

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=97.19  E-value=0.0064  Score=53.76  Aligned_cols=124  Identities=19%  Similarity=0.269  Sum_probs=93.6

Q ss_pred             ccceEEEEEEEEeecCCCCC--CCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCC-------------
Q 008305          441 IVRGVLSITVIAAENLPKVD--LIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ-------------  505 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-------------  505 (570)
                      .....|++.|..++-....-  ..+..+..+.+++.-.+++++|+.+..+.+|.|+|.|-|.+....             
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            34678999999988654321  115667777777766679999999999999999999999986331             


Q ss_pred             CcEEEEEEEECCCCCC-ceeEEEEEeccccccCceE--EEEEEecCC------CCeEEEEEEEEEecC
Q 008305          506 HEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEI--QDSFHIDGT------KSGKLFLNLKWTPQL  564 (570)
Q Consensus       506 ~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~--~~w~~L~~~------~~G~i~l~~~~~p~~  564 (570)
                      .+.+++-|.-.+..+. .++|.-.++...++..+..  .-...|.|.      ..|-+.++++..|..
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~  153 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL  153 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence            3468888888777655 6999999999999877654  444555432      478999999988864

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.15  E-value=0.0008  Score=70.38  Aligned_cols=88  Identities=26%  Similarity=0.507  Sum_probs=68.6

Q ss_pred             EEEecCCCCCCCCCCCCcEEEEEEEeCC---CceEEeeeeCCCCCCeeecEEEEEEecC----CCCeEEEEEEeCCCCCC
Q 008305          270 LVQAKELTNKDLIGKSDPFVVIFVRPLR---DRMKTSKTINNELNPIWNEHFEFTVEDA----STQHLTVRVFDDEGPML  342 (570)
Q Consensus       270 V~~A~~L~~~~~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~nP~Wne~f~f~v~~~----~~~~L~~~v~d~d~~~~  342 (570)
                      ..+|++|.++|..+++|||..++-.-..   ...++|.++++++||.|.+ |.+.....    ....+.+.+||++.. +
T Consensus       142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~-~  219 (529)
T KOG1327|consen  142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSN-G  219 (529)
T ss_pred             eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCC-C
Confidence            3558999999999999999987654211   2258999999999999985 33433221    235688999999998 8


Q ss_pred             CCceEEEEEEEccccCC
Q 008305          343 APEIIGIAQIALKELEP  359 (570)
Q Consensus       343 ~d~~lG~~~i~l~~l~~  359 (570)
                      +++++|.+..++.++..
T Consensus       220 ~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  220 KHDLIGKFQTTLSELQE  236 (529)
T ss_pred             CcCceeEecccHHHhcc
Confidence            88999999999999864

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=96.60  E-value=0.11  Score=45.94  Aligned_cols=120  Identities=22%  Similarity=0.290  Sum_probs=80.3

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCc-eEeCccc-CCCCCCeeeeEEEEEee---cC-----CCcEEEEE
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN-RAKTRVA-HDTLNPVWNQTFDFVVE---DG-----QHEMLILD  512 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~-~~kT~v~-~~t~nP~w~e~f~f~v~---~~-----~~~~L~i~  512 (570)
                      .-.+.++|++..+++..    ...-||+...+.... ..+|... ..+..-.|||.|.+.+.   +.     ....+.|.
T Consensus         6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~   81 (143)
T PF10358_consen    6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS   81 (143)
T ss_pred             eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence            46788999999999861    123344444332111 2344332 23456889999999884   11     23458899


Q ss_pred             EEECCCCCCc-eeEEEEEeccccccC--ceEEEEEEecCC--CCeEEEEEEEEEecCCC
Q 008305          513 VYDHDTFGKD-KMGKCIMTLTRVMME--GEIQDSFHIDGT--KSGKLFLNLKWTPQLVL  566 (570)
Q Consensus       513 V~d~~~~~~d-~lG~~~i~l~~l~~~--~~~~~w~~L~~~--~~G~i~l~~~~~p~~~~  566 (570)
                      |+.....++. .+|.+.|+|++....  ......++|.+.  ....+++.+++.+....
T Consensus        82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~  140 (143)
T PF10358_consen   82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELRED  140 (143)
T ss_pred             EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccC
Confidence            9987544454 899999999999975  456777888765  45688888888876543

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.50  E-value=0.043  Score=48.61  Aligned_cols=128  Identities=14%  Similarity=0.179  Sum_probs=88.1

Q ss_pred             ceEEEEEEEEecCCCCCCC--CCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCC-------------C
Q 008305          263 CGTLDVKLVQAKELTNKDL--IGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAS-------------T  327 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~--~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~-------------~  327 (570)
                      .-.|.++|..++-....-.  .+..+.-..+++. -++|.++|+.+..+.+|.++|.|-|.+....             .
T Consensus         8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~   86 (156)
T PF15627_consen    8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS   86 (156)
T ss_pred             ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence            4478888888876543211  1344444555444 2378899999999999999999999986432             2


Q ss_pred             CeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeee--EEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305          328 QHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVK--DVWLKLVKDVKVQRDTKNRGQVHLELLYCPF  394 (570)
Q Consensus       328 ~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~--~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  394 (570)
                      +.+.+.|.-.|.. +...++|...++...+......  ..-+.|....  .......|-|.++++.+|.
T Consensus        87 ~pihivli~~d~~-~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~--~e~kv~~GiL~l~lELlP~  152 (156)
T PF15627_consen   87 DPIHIVLIRTDPS-GETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG--PESKVPVGILDLRLELLPN  152 (156)
T ss_pred             CceEEEEEEecCC-CceEeeeeceehHHHHhccCCCccceeEEEeccC--CCCccceeEEEEEEEeecC
Confidence            4577888777766 6668999999999988765543  3334443221  2224578999999999875

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.71  E-value=0.81  Score=40.28  Aligned_cols=119  Identities=18%  Similarity=0.243  Sum_probs=74.5

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeee-CCCCCCeeecEEEEEEec--------CCCCeEEE
Q 008305          264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTI-NNELNPIWNEHFEFTVED--------ASTQHLTV  332 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~-~~t~nP~Wne~f~f~v~~--------~~~~~L~~  332 (570)
                      =.+.|++.+..+++..      +..+.+......+.  ..+|... ..+..-.|||.|.+.+.-        .....+.|
T Consensus         7 f~~~l~i~~l~~~p~~------~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~   80 (143)
T PF10358_consen    7 FQFDLTIHELENLPSS------NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF   80 (143)
T ss_pred             EEEEEEEEEeECcCCC------CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence            3577888898888762      22333333311222  2334332 334567999999887631        12345889


Q ss_pred             EEEeCCCCCCCCceEEEEEEEccccCCC--eeeEEEEEeeccccccCCCcceeEEEEEEEEEecc
Q 008305          333 RVFDDEGPMLAPEIIGIAQIALKELEPG--KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFG  395 (570)
Q Consensus       333 ~v~d~d~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~  395 (570)
                      .|+..... +....+|.+.++|++....  .....-++|..      .......|++++.+.+..
T Consensus        81 ~v~~~~~~-~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~------~~~~~a~L~isi~~~~~~  138 (143)
T PF10358_consen   81 SVFEVDGS-GKKKVLGKVSINLAEYANEDEEPITVRLLLKK------CKKSNATLSISISLSELR  138 (143)
T ss_pred             EEEEecCC-CccceEEEEEEEHHHhhCcCCCcEEEEEeCcc------CCCCCcEEEEEEEEEECc
Confidence            99988543 3336999999999999874  34445555532      235677888988887654

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.52  E-value=0.36  Score=43.35  Aligned_cols=90  Identities=17%  Similarity=0.251  Sum_probs=60.9

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc---eEEeeeeCCCCCCeeecEEEEEEe--c-CCCCeEEEEEEeC
Q 008305          264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR---MKTSKTINNELNPIWNEHFEFTVE--D-ASTQHLTVRVFDD  337 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~~~v~d~  337 (570)
                      ..++|+|++|.++.-.+   .+|-||.+.+-..+..   ...|+.+.. .++.|||...|.+.  + +....|.|.+|+.
T Consensus         8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            46889999999987543   4688888877532211   223443443 67999999988763  2 3446799999997


Q ss_pred             CCCC---CCCceEEEEEEEcccc
Q 008305          338 EGPM---LAPEIIGIAQIALKEL  357 (570)
Q Consensus       338 d~~~---~~d~~lG~~~i~l~~l  357 (570)
                      ....   .....+|.+.++|=+-
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECC
Confidence            6430   1235699999998764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.47  E-value=0.11  Score=47.49  Aligned_cols=89  Identities=21%  Similarity=0.271  Sum_probs=62.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCc----eEeCcccCCCCCCeeeeEEEEEee--c-CCCcEEEEEEEEC
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN----RAKTRVAHDTLNPVWNQTFDFVVE--D-GQHEMLILDVYDH  516 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~V~d~  516 (570)
                      ..++|+|+++.++...  ....+-||++.+-++.+    ...|+.+..+.++.|||.++|++.  + +..+.|.|.||+.
T Consensus         8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            4689999999999862  23466788876643332    235555444577999999999763  3 3677899999986


Q ss_pred             CCCC----------------C-ceeEEEEEecccc
Q 008305          517 DTFG----------------K-DKMGKCIMTLTRV  534 (570)
Q Consensus       517 ~~~~----------------~-d~lG~~~i~l~~l  534 (570)
                      ...+                + ..||.+.++|-+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            5321                1 3799999998874

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.39  E-value=0.25  Score=49.96  Aligned_cols=115  Identities=13%  Similarity=0.245  Sum_probs=85.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEee-------cCCCcEEEEEEEECCC
Q 008305          446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVE-------DGQHEMLILDVYDHDT  518 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~-------~~~~~~L~i~V~d~~~  518 (570)
                      +.|.|.+|+|++...   ...-.+..++++  ....|..+..+..|.||....+.+.       ...+..|++++|..+.
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng--~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~   76 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNG--ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG   76 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCC--ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC
Confidence            578899999998752   234577788864  6678888889999999999999874       2246679999998873


Q ss_pred             C--CCceeEEEEEecccc---ccC--ceEEEEEEecCC------CCeEEEEEEEEEecCC
Q 008305          519 F--GKDKMGKCIMTLTRV---MME--GEIQDSFHIDGT------KSGKLFLNLKWTPQLV  565 (570)
Q Consensus       519 ~--~~d~lG~~~i~l~~l---~~~--~~~~~w~~L~~~------~~G~i~l~~~~~p~~~  565 (570)
                      .  .++.+|.+.++|...   ..+  ..-.+||+|-+.      ..-+|.+.+.......
T Consensus        77 ~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~  136 (340)
T PF12416_consen   77 STGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK  136 (340)
T ss_pred             CCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence            2  347999999999998   433  344789999654      2467777777655443

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.29  E-value=0.14  Score=46.00  Aligned_cols=87  Identities=18%  Similarity=0.219  Sum_probs=61.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCce----EeCcccCCCCCCeeeeEEEEEee--c-CCCcEEEEEEEEC
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNR----AKTRVAHDTLNPVWNQTFDFVVE--D-GQHEMLILDVYDH  516 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~----~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~V~d~  516 (570)
                      ..++|.|+++++++..+   .++-||++.+-++.+.    ..|+.+.. .++.|||-.+|++.  + +..+.|.|+||+.
T Consensus         8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            46889999999998643   3578888877443321    23443333 68999999989874  3 3677899999996


Q ss_pred             CCCC---C--ceeEEEEEecccc
Q 008305          517 DTFG---K--DKMGKCIMTLTRV  534 (570)
Q Consensus       517 ~~~~---~--d~lG~~~i~l~~l  534 (570)
                      ...+   +  ..+|.++++|-+-
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECC
Confidence            5421   1  2699999999874

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.10  E-value=0.051  Score=59.59  Aligned_cols=91  Identities=23%  Similarity=0.439  Sum_probs=68.8

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC----ceEEeeee-CCCCCCeeec-EEEEE-EecCCCCeEEEEE
Q 008305          262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD----RMKTSKTI-NNELNPIWNE-HFEFT-VEDASTQHLTVRV  334 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~----~~~~T~~~-~~t~nP~Wne-~f~f~-v~~~~~~~L~~~v  334 (570)
                      -.+.+.|+|+++.-|..++    ...||.|.+-..+.    +.++|++. .|+.||+|+| .|.|. |--++-..|+|.|
T Consensus       701 IA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav  776 (1189)
T KOG1265|consen  701 IAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV  776 (1189)
T ss_pred             EEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence            3578899999999998766    33799999874433    34677765 5788999996 56664 3334455799999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCe
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGK  361 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~  361 (570)
                      |+..+     .+||.-.+|+..|..|-
T Consensus       777 yeEgg-----K~ig~RIlpvd~l~~GY  798 (1189)
T KOG1265|consen  777 YEEGG-----KFIGQRILPVDGLNAGY  798 (1189)
T ss_pred             eccCC-----ceeeeeccchhcccCcc
Confidence            99754     59999999999998764

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.04  E-value=0.052  Score=59.53  Aligned_cols=91  Identities=22%  Similarity=0.371  Sum_probs=69.7

Q ss_pred             cccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-----CCceEeCcccCC-CCCCeeeeE-EEEE-eecCCCcEEEE
Q 008305          440 VIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-----AGNRAKTRVAHD-TLNPVWNQT-FDFV-VEDGQHEMLIL  511 (570)
Q Consensus       440 ~~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~~kT~v~~~-t~nP~w~e~-f~f~-v~~~~~~~L~i  511 (570)
                      ....+.+.|+|+++.=|...+.    ..||+|.+.+     ..+.++|+++.. +.||+|+|. |.|. |--+.-+.|.|
T Consensus       699 gvIA~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRi  774 (1189)
T KOG1265|consen  699 GVIAATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRI  774 (1189)
T ss_pred             ceEEeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheee
Confidence            3567889999999999976553    4899999853     124578887765 699999964 7775 22345678999


Q ss_pred             EEEECCCCCCceeEEEEEeccccccC
Q 008305          512 DVYDHDTFGKDKMGKCIMTLTRVMME  537 (570)
Q Consensus       512 ~V~d~~~~~~d~lG~~~i~l~~l~~~  537 (570)
                      .|++.+.   .++|+=.+|++.+..+
T Consensus       775 avyeEgg---K~ig~RIlpvd~l~~G  797 (1189)
T KOG1265|consen  775 AVYEEGG---KFIGQRILPVDGLNAG  797 (1189)
T ss_pred             eeeccCC---ceeeeeccchhcccCc
Confidence            9999764   6999999999987544

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.89  E-value=0.18  Score=46.07  Aligned_cols=91  Identities=13%  Similarity=0.218  Sum_probs=58.7

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC---ceEEeeeeCCCCCCeeecEEEEEEe--c-CCCCeEEEEEEeC
Q 008305          264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD---RMKTSKTINNELNPIWNEHFEFTVE--D-ASTQHLTVRVFDD  337 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~~~v~d~  337 (570)
                      ..++|+|+.+.++...  ....+-||.+.+--.+.   ....|+.+..+.++.|||.+.|.+.  + +....|.|.||+.
T Consensus         8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            3689999999999752  23466777766642221   1235555554567999999999763  2 3456799999997


Q ss_pred             CCCC---------------CCCceEEEEEEEccc
Q 008305          338 EGPM---------------LAPEIIGIAQIALKE  356 (570)
Q Consensus       338 d~~~---------------~~d~~lG~~~i~l~~  356 (570)
                      ....               +.+..||.+.++|=+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEc
Confidence            5430               113567777666554

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.11  E-value=0.33  Score=43.58  Aligned_cols=91  Identities=15%  Similarity=0.255  Sum_probs=59.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC---ceEEeeeeCCCCCCeeecEEEEEEe--c-CCCCeEEEEEEeCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD---RMKTSKTINNELNPIWNEHFEFTVE--D-ASTQHLTVRVFDDE  338 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~~~v~d~d  338 (570)
                      .++|++....++...+ ....+-|+.+.+--.+.   ....|.......++.|||...|.+.  + +....|.|.+|+.+
T Consensus         9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            5678888877776521 23456677776653221   1234443343468999999998763  2 33457999999987


Q ss_pred             CCCC--CCceEEEEEEEcccc
Q 008305          339 GPML--APEIIGIAQIALKEL  357 (570)
Q Consensus       339 ~~~~--~d~~lG~~~i~l~~l  357 (570)
                      .. +  .+..||.+.++|=+-
T Consensus        88 ~~-~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          88 EP-GSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             cC-CCCcceEEEEEeEEeEcc
Confidence            65 3  467899999997764

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=94.06  E-value=0.61  Score=37.06  Aligned_cols=84  Identities=15%  Similarity=0.245  Sum_probs=59.0

Q ss_pred             CCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeE
Q 008305          285 SDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKD  364 (570)
Q Consensus       285 ~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~  364 (570)
                      ++-.+.+.++  +....+|.-... .+..|++.|.+.+..  +..|+|.||-+|-    ..+-|...+.|++...+.   
T Consensus         9 ~eV~avLklD--n~~VgqT~Wk~~-s~q~WDQ~Fti~LdR--sRELEI~VywrD~----RslCav~~lrLEd~~~~~---   76 (98)
T cd08687           9 SEVSAVLKLD--NTVVGQTQWKPK-SNQAWDQSFTLELER--SRELEIAVYWRDW----RSLCAVKFLKLEDERHEV---   76 (98)
T ss_pred             cceEEEEEEc--CeEEeecccccc-ccccccceeEEEeec--ccEEEEEEEEecc----hhhhhheeeEhhhhcccc---
Confidence            6678888887  345677775543 478999999999884  4689999998764    356777888888843221   


Q ss_pred             EEEEeeccccccCCCcceeEEEEEEEE
Q 008305          365 VWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       365 ~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                       -.          +-.+.|.+..+++|
T Consensus        77 -~~----------~lepqg~l~~ev~f   92 (98)
T cd08687          77 -QL----------DMEPQLCLVAELTF   92 (98)
T ss_pred             -ee----------ccccccEEEEEEEe
Confidence             12          23567888777776

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.94  E-value=0.39  Score=43.11  Aligned_cols=90  Identities=22%  Similarity=0.275  Sum_probs=61.7

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCc----eEeCcccCCCCCCeeeeEEEEEee--c-CCCcEEEEEEEEC
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN----RAKTRVAHDTLNPVWNQTFDFVVE--D-GQHEMLILDVYDH  516 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~V~d~  516 (570)
                      ..++|.++.+.++...+ ....+-||++.+-.+.+    ...|.....+.++.|||..+|++.  + +..+.|.|.||+.
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            45778888888886521 23456777776643222    234444333468999999999863  3 3677899999997


Q ss_pred             CCCC--C-ceeEEEEEecccc
Q 008305          517 DTFG--K-DKMGKCIMTLTRV  534 (570)
Q Consensus       517 ~~~~--~-d~lG~~~i~l~~l  534 (570)
                      +..+  + ..||.+.++|-+.
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEcc
Confidence            7654  2 4899999999884

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=93.86  E-value=0.54  Score=37.33  Aligned_cols=84  Identities=20%  Similarity=0.251  Sum_probs=58.9

Q ss_pred             CCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCceeEEEEEeccccccCceEEEEE
Q 008305          465 ADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSF  544 (570)
Q Consensus       465 ~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~  544 (570)
                      .+..+.+.+.+ .....|.-. ...+..|++.|.+.+..  ...|.|.|+-+|.  ..+-|...+.|.+...      ..
T Consensus         9 ~eV~avLklDn-~~VgqT~Wk-~~s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~~~------~~   76 (98)
T cd08687           9 SEVSAVLKLDN-TVVGQTQWK-PKSNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDERH------EV   76 (98)
T ss_pred             cceEEEEEEcC-eEEeecccc-ccccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhhcc------cc
Confidence            56677777753 355666643 33688999999999863  6789999998775  4577777888888322      23


Q ss_pred             EecCCCCeEEEEEEEE
Q 008305          545 HIDGTKSGKLFLNLKW  560 (570)
Q Consensus       545 ~L~~~~~G~i~l~~~~  560 (570)
                      .+.-.++|.+..++.|
T Consensus        77 ~~~lepqg~l~~ev~f   92 (98)
T cd08687          77 QLDMEPQLCLVAELTF   92 (98)
T ss_pred             eeccccccEEEEEEEe
Confidence            3444457888888877

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=93.64  E-value=0.13  Score=49.97  Aligned_cols=118  Identities=15%  Similarity=0.122  Sum_probs=74.9

Q ss_pred             CCceEEEEEEEEecCCCCCCC--CCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCC
Q 008305          261 KPCGTLDVKLVQAKELTNKDL--IGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDE  338 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~--~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d  338 (570)
                      ...|+|.++++.+++|.....  .-.-+-||++...  .....+|.+.....--.|.|+|..++...  ..+.+-||.|+
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d--rqh~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW~  123 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD--RQHPARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSWP  123 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeec--ccCccccccccCCCCccchhhceeecccc--eeeeEEEeecC
Confidence            368999999999999975432  2345889999987  22345566555555558999999888743  47889999998


Q ss_pred             CCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          339 GPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       339 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                      .. .++++.-...+.+..+..... +.-+.|        .-.++|++.+.+.+.
T Consensus       124 pq-~RHKLC~~g~l~~~~v~rqsp-d~~~Al--------~lePrgq~~~r~~~~  167 (442)
T KOG1452|consen  124 PQ-RRHKLCHLGLLEAFVVDRQSP-DRVVAL--------YLEPRGQPPLRLPLA  167 (442)
T ss_pred             ch-hhccccccchhhhhhhhhcCC-cceeee--------ecccCCCCceecccC
Confidence            87 566654333344443332221 111222        224577777776653

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.61  E-value=0.33  Score=43.65  Aligned_cols=72  Identities=21%  Similarity=0.318  Sum_probs=51.7

Q ss_pred             CCCCcEEEEEEeCCCc----eEeCcccCCCCCCeeeeEEEEEee--c-CCCcEEEEEEEECCCCCC-ceeEEEEEecccc
Q 008305          463 GKADPFVVLQLKKAGN----RAKTRVAHDTLNPVWNQTFDFVVE--D-GQHEMLILDVYDHDTFGK-DKMGKCIMTLTRV  534 (570)
Q Consensus       463 g~~dpyv~v~~~~~~~----~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l  534 (570)
                      ..++-||++.+-.+..    ...|+.+.-+..+.|||-..|++.  + +.++.|.|+|||....++ ..+|.++++|-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            3467788877643322    224555555677899999999874  2 367889999999876544 4899999999874

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.49  E-value=0.33  Score=44.34  Aligned_cols=92  Identities=18%  Similarity=0.283  Sum_probs=64.8

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCce----EeCcccC----CCCCCeeeeEEEEEee---cCCCcEEEE
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNR----AKTRVAH----DTLNPVWNQTFDFVVE---DGQHEMLIL  511 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~----~kT~v~~----~t~nP~w~e~f~f~v~---~~~~~~L~i  511 (570)
                      ...+.|+|.++.+++........|-|+.+.+-.+.+.    ..|+...    -...+.|||-.+|.+.   -+..+.|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            4678899999999998765556788888877433321    2333211    1235779999888874   236778999


Q ss_pred             EEEECCCCC---------C-ceeEEEEEecccc
Q 008305          512 DVYDHDTFG---------K-DKMGKCIMTLTRV  534 (570)
Q Consensus       512 ~V~d~~~~~---------~-d~lG~~~i~l~~l  534 (570)
                      .||+....+         + ..||.+.++|-+.
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999866543         2 4899999999874

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.39  E-value=0.87  Score=41.66  Aligned_cols=90  Identities=14%  Similarity=0.203  Sum_probs=57.2

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCc---eEeCcccCCCCCCeeeeEEEEEee--c-CCCcEEEEEEEECC
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN---RAKTRVAHDTLNPVWNQTFDFVVE--D-GQHEMLILDVYDHD  517 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~---~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~V~d~~  517 (570)
                      ..++|+|.++.+ +..+......-||++.+-.+..   ..+|.....+.+|.|||-..|++.  + +..+.|.|.||+..
T Consensus        10 ~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          10 RKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            357788888863 3333233345677765533322   124555555678999999888874  3 35678999999853


Q ss_pred             CC---------------CC--ceeEEEEEecccc
Q 008305          518 TF---------------GK--DKMGKCIMTLTRV  534 (570)
Q Consensus       518 ~~---------------~~--d~lG~~~i~l~~l  534 (570)
                      ..               ++  ..||.+.+.|-+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~  122 (178)
T cd08399          89 APALSSKKSAESPSSESKGKHQLLYYVNLLLIDH  122 (178)
T ss_pred             cCcccccccccccccccccccceEEEEEEEEEcC
Confidence            21               11  2688899988774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=93.24  E-value=0.13  Score=50.02  Aligned_cols=115  Identities=18%  Similarity=0.190  Sum_probs=73.3

Q ss_pred             ccceEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCC
Q 008305          441 IVRGVLSITVIAAENLPKVDL--IGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDT  518 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~--~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~  518 (570)
                      ..+|+|.+++..+++|.-...  .-.-+-||.+.+.. ..+.+|.+......=.|.|.|...+.+  ...+.+-||.|+.
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr-qh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~p  124 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR-QHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPP  124 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecc-cCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCc
Confidence            457999999999999975432  23357899998752 334445444334445678999988765  4578888888776


Q ss_pred             CCC-c--eeEEEEEeccccccCceEEEEEEecCCCCeEEEEEEEEE
Q 008305          519 FGK-D--KMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWT  561 (570)
Q Consensus       519 ~~~-d--~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~  561 (570)
                      ..+ +  ..|  -+.+..+.+... .+-+.|.-.+.|++.+++.+.
T Consensus       125 q~RHKLC~~g--~l~~~~v~rqsp-d~~~Al~lePrgq~~~r~~~~  167 (442)
T KOG1452|consen  125 QRRHKLCHLG--LLEAFVVDRQSP-DRVVALYLEPRGQPPLRLPLA  167 (442)
T ss_pred             hhhccccccc--hhhhhhhhhcCC-cceeeeecccCCCCceecccC
Confidence            433 2  455  333333333222 344566666678888877764

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.15  E-value=0.4  Score=43.17  Aligned_cols=74  Identities=19%  Similarity=0.208  Sum_probs=51.9

Q ss_pred             CCCCcEEEEEEEeCCCc---eEEeeeeCCCCCCeeecEEEEEEe--c-CCCCeEEEEEEeCCCCCCCCceEEEEEEEccc
Q 008305          283 GKSDPFVVIFVRPLRDR---MKTSKTINNELNPIWNEHFEFTVE--D-ASTQHLTVRVFDDEGPMLAPEIIGIAQIALKE  356 (570)
Q Consensus       283 g~~dpyv~v~l~~~~~~---~~~T~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~  356 (570)
                      ..+|-||.+.+-..+..   ...|+.+.-+..+.|||...|.+.  + +....|.|.|||.+.. +....+|.+.++|=+
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~-~~~~~vg~~~~~lFd  106 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT-GKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC-CCceEEEEEEEeeEC
Confidence            45778888877532211   235555555667899999998874  2 3345799999998876 567789999998766


Q ss_pred             c
Q 008305          357 L  357 (570)
Q Consensus       357 l  357 (570)
                      -
T Consensus       107 ~  107 (159)
T cd08397         107 K  107 (159)
T ss_pred             C
Confidence            4

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=92.97  E-value=1.4  Score=40.80  Aligned_cols=56  Identities=14%  Similarity=0.152  Sum_probs=40.9

Q ss_pred             eEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEEeCCCCCCCC---ceEEEEEEEcc
Q 008305          300 MKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVFDDEGPMLAP---EIIGIAQIALK  355 (570)
Q Consensus       300 ~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~d~d~~~~~d---~~lG~~~i~l~  355 (570)
                      .++|.+...+.+|.|+|++.+.+..  ....+|.|++++......+|   ..+|.+.+||-
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            5788888889999999999888743  35568999998865331222   46777777764

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.58  E-value=0.47  Score=43.38  Aligned_cols=93  Identities=15%  Similarity=0.240  Sum_probs=61.4

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc---eEEeeeeC----CCCCCeeecEEEEEEe--c-CCCCeEEEE
Q 008305          264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR---MKTSKTIN----NELNPIWNEHFEFTVE--D-ASTQHLTVR  333 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~----~t~nP~Wne~f~f~v~--~-~~~~~L~~~  333 (570)
                      ..+.|+|.++.+++........|-|+.+.+--.+..   ...|+...    -...+.|||...|.+.  + +....|.|.
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it   87 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT   87 (171)
T ss_pred             ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence            468899999999987654445788888877532211   12333211    1235779999988763  2 344679999


Q ss_pred             EEeCCCCCC---------CCceEEEEEEEcccc
Q 008305          334 VFDDEGPML---------APEIIGIAQIALKEL  357 (570)
Q Consensus       334 v~d~d~~~~---------~d~~lG~~~i~l~~l  357 (570)
                      +|+.... +         .+..||.+.++|=+-
T Consensus        88 l~~~~~~-~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          88 LYGTTSS-PDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEecC-CccccccccccceEEEEEeEeeEcc
Confidence            9997654 3         346888888887653

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=92.20  E-value=1.8  Score=38.16  Aligned_cols=54  Identities=20%  Similarity=0.308  Sum_probs=39.9

Q ss_pred             eCcccCCC-CCCeeeeEEEEEee--c-CCCcEEEEEEEECCCCCC-----ceeEEEEEecccc
Q 008305          481 KTRVAHDT-LNPVWNQTFDFVVE--D-GQHEMLILDVYDHDTFGK-----DKMGKCIMTLTRV  534 (570)
Q Consensus       481 kT~v~~~t-~nP~w~e~f~f~v~--~-~~~~~L~i~V~d~~~~~~-----d~lG~~~i~l~~l  534 (570)
                      .|+....+ .++.|||..+|++.  + +..+.|.|.||+.+....     ..||.+.++|-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            56655555 79999999888874  3 367889999998776544     4899999999885

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.17  E-value=1.6  Score=39.95  Aligned_cols=73  Identities=14%  Similarity=0.222  Sum_probs=44.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc---eEEeeeeCCCCCCeeecEEEEEEe--c-CCCCeEEEEEEeCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR---MKTSKTINNELNPIWNEHFEFTVE--D-ASTQHLTVRVFDDE  338 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~~~v~d~d  338 (570)
                      .++|+|.++..+ ..+......-||.+.+-. +++   ..+|+...-+.++.|||...|.+.  + +....|.|.||+..
T Consensus        11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CEEEEEEeeccc-CcCCCCceEEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            567888887633 322222233566654442 122   235665666678999999888763  2 33467999999974


Q ss_pred             C
Q 008305          339 G  339 (570)
Q Consensus       339 ~  339 (570)
                      .
T Consensus        89 ~   89 (178)
T cd08399          89 A   89 (178)
T ss_pred             c
Confidence            4

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=90.69  E-value=1.6  Score=40.14  Aligned_cols=56  Identities=16%  Similarity=0.205  Sum_probs=40.4

Q ss_pred             eEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEEeCCCCC-CCCceEEEEEEEcc
Q 008305          300 MKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVFDDEGPM-LAPEIIGIAQIALK  355 (570)
Q Consensus       300 ~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~d~d~~~-~~d~~lG~~~i~l~  355 (570)
                      .++|.+...+.+|.|+|++.+.+..  ....+|.|++++..... .....+|.+.+||-
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            5788899999999999999988753  34568999888865430 11256777777763

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=89.64  E-value=1.8  Score=38.16  Aligned_cols=55  Identities=15%  Similarity=0.355  Sum_probs=39.2

Q ss_pred             EeeeeCCC-CCCeeecEEEEEEe--c-CCCCeEEEEEEeCCCCCCCC----ceEEEEEEEcccc
Q 008305          302 TSKTINNE-LNPIWNEHFEFTVE--D-ASTQHLTVRVFDDEGPMLAP----EIIGIAQIALKEL  357 (570)
Q Consensus       302 ~T~~~~~t-~nP~Wne~f~f~v~--~-~~~~~L~~~v~d~d~~~~~d----~~lG~~~i~l~~l  357 (570)
                      .|+...-+ .++.|||...|.+.  + +....|.|.||+.+.. ..+    ..||.+.++|=+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~-~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK-KKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS-TTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC-CccccceeEEEEEEEEeECC
Confidence            55555554 79999999999874  2 3456899999998776 444    6899999997765

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=89.01  E-value=2.1  Score=39.63  Aligned_cols=57  Identities=16%  Similarity=0.222  Sum_probs=34.0

Q ss_pred             eEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEeCCCCCCCC--ceEEEEEEEccc
Q 008305          300 MKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFDDEGPMLAP--EIIGIAQIALKE  356 (570)
Q Consensus       300 ~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d~d~~~~~d--~~lG~~~i~l~~  356 (570)
                      .+.|.+..++.+|.|+|+|.+.+...  ...+|.|++++.....+++  ..+|.+.+||-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            56788888899999999999988543  3567999999976541122  689998888877

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=88.99  E-value=7.1  Score=35.49  Aligned_cols=97  Identities=12%  Similarity=0.277  Sum_probs=64.4

Q ss_pred             CcEEEEEEeCCCceEeCcccCCC--CCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCceeEEEEEeccccccCc--e--
Q 008305          466 DPFVVLQLKKAGNRAKTRVAHDT--LNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEG--E--  539 (570)
Q Consensus       466 dpyv~v~~~~~~~~~kT~v~~~t--~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~--~--  539 (570)
                      .-|+++.+++ +...+|+...-+  ..=.|||.|.+.+.. --+.|.++||.....++..|+.+.+++-......  .  
T Consensus        38 ~~~ikl~~N~-k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~~~~~~~~  115 (168)
T PF15625_consen   38 RYYIKLFFND-KEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSGLSDRLLAEVFVPVPGSTVHTSTDNV  115 (168)
T ss_pred             eEEEEEEECC-EEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccCccceEEEEEEeeCCCCcccccccCC
Confidence            4578888874 456666643322  224568999999976 3567999999998855579999999987654331  1  


Q ss_pred             EEEEEEecC------------------------CCCeEEEEEEEEEecC
Q 008305          540 IQDSFHIDG------------------------TKSGKLFLNLKWTPQL  564 (570)
Q Consensus       540 ~~~w~~L~~------------------------~~~G~i~l~~~~~p~~  564 (570)
                      ...|+.+..                        .-+|+|++++.|....
T Consensus       116 ~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~~~  164 (168)
T PF15625_consen  116 PLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAVGE  164 (168)
T ss_pred             ceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEeCCC
Confidence            233443311                        1269999999997543

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=88.60  E-value=3  Score=34.22  Aligned_cols=73  Identities=21%  Similarity=0.273  Sum_probs=47.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCc----eEeCcccCCCCCCeeeeEEEEEee---cCCCcEEEEEEEECCC
Q 008305          446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGN----RAKTRVAHDTLNPVWNQTFDFVVE---DGQHEMLILDVYDHDT  518 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~v~~~t~nP~w~e~f~f~v~---~~~~~~L~i~V~d~~~  518 (570)
                      +.+.+..+++.........++-||++.+-.+.+    ...|..+.-...+.|||-..|++.   -+..+.|.|.||+...
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence            556777777776544333357888887743332    124544444566999999888774   3367889999998643

Outlier of C2 family.

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=88.02  E-value=1.2  Score=49.90  Aligned_cols=106  Identities=14%  Similarity=0.281  Sum_probs=78.7

Q ss_pred             CCcEEEEEEEeCCCceEEeeeeCCC-CCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeee
Q 008305          285 SDPFVVIFVRPLRDRMKTSKTINNE-LNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVK  363 (570)
Q Consensus       285 ~dpyv~v~l~~~~~~~~~T~~~~~t-~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~  363 (570)
                      .++|+.+.+.  .....+|....+. .+|.|++.|........ ..+.+.+-+.+.. +....+|.+.++...+..+...
T Consensus       138 ~e~Ylt~~l~--~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-g~v~~~~~~~~~~-G~s~~w~~v~~s~~~~~~~~~~  213 (887)
T KOG1329|consen  138 LENYLTVVLH--KARYRRTHVIYEFLENSRWSFSFDIGFAHKA-GYVIFRVKGARVP-GWSKRWGRVKISFLQYCSGHRI  213 (887)
T ss_pred             ccchheeeec--hhhhhchhhhhcccccchhhhhccccccccc-cEEEEeecCCccc-cceeEEEEeccchhhhhccccc
Confidence            4889988886  2344566666666 79999999988877655 4889999888887 5578999999999999988888


Q ss_pred             EEEEEeeccccccCCCcceeEEEEEEEEEeccC
Q 008305          364 DVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGT  396 (570)
Q Consensus       364 ~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~  396 (570)
                      ..|+++.....  +.......+.+.+.|.+...
T Consensus       214 ~~~~~Il~~d~--~~~~~~~~~~~~~~~~~~~~  244 (887)
T KOG1329|consen  214 GGWFPILDNDG--KPHQKGSNESLRLGFTPMEK  244 (887)
T ss_pred             cceeeeeccCC--ccccCCcccceEEeeEeech
Confidence            89998865432  12223344667788887654

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=85.69  E-value=7.8  Score=35.75  Aligned_cols=55  Identities=18%  Similarity=0.270  Sum_probs=42.4

Q ss_pred             eEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCCC--C-ceeEEEEEeccc
Q 008305          479 RAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTFG--K-DKMGKCIMTLTR  533 (570)
Q Consensus       479 ~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~~--~-d~lG~~~i~l~~  533 (570)
                      .++|.+.+++.+|.|+|++.+.+...  .+..|.|+++......  + ..+|-+.++|-+
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            56888899999999999999988533  5678999888754432  1 479999999854

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=84.91  E-value=20  Score=32.60  Aligned_cols=104  Identities=9%  Similarity=0.204  Sum_probs=68.5

Q ss_pred             CCCcEEEEEEEeCCCceEEeeeeCC--CCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCC-
Q 008305          284 KSDPFVVIFVRPLRDRMKTSKTINN--ELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG-  360 (570)
Q Consensus       284 ~~dpyv~v~l~~~~~~~~~T~~~~~--t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~-  360 (570)
                      +..-|+++.++  ++...+|+...-  ...-.+||.|.+.+.. -.+.|.++||.....  .+..|+++.+|+-..... 
T Consensus        36 ~~~~~ikl~~N--~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~~--~~~~la~v~vpvP~~~~~~  110 (168)
T PF15625_consen   36 KTRYYIKLFFN--DKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSGL--SDRLLAEVFVPVPGSTVHT  110 (168)
T ss_pred             heeEEEEEEEC--CEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccCc--cceEEEEEEeeCCCCcccc
Confidence            34568888887  355666765533  2334678999999976 446899999998875  789999999998766432 


Q ss_pred             -ee--eEEEEEeeccccc----------------cCCCcceeEEEEEEEEE
Q 008305          361 -KV--KDVWLKLVKDVKV----------------QRDTKNRGQVHLELLYC  392 (570)
Q Consensus       361 -~~--~~~w~~L~~~~~~----------------~~~~~~~G~l~l~l~~~  392 (570)
                       ..  ...|+........                .......|.|.+++.|.
T Consensus       111 ~~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~  161 (168)
T PF15625_consen  111 STDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWA  161 (168)
T ss_pred             cccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEe
Confidence             11  3445554332211                11224578888888875

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=84.71  E-value=0.94  Score=38.46  Aligned_cols=29  Identities=24%  Similarity=0.485  Sum_probs=18.8

Q ss_pred             hhhHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 008305            4 LYGMFFGISFGIGLMVAYARYENVRSRRR   32 (570)
Q Consensus         4 ~~g~~~g~~~g~~l~~~~~~~~~~r~~~~   32 (570)
                      +.|+++|.++|+++.++++.|.-+|.++|
T Consensus        66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk   94 (122)
T PF01102_consen   66 IIGIIFGVMAGVIGIILLISYCIRRLRKK   94 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             eeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            56777888777777777776655554444

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=84.36  E-value=12  Score=34.60  Aligned_cols=39  Identities=10%  Similarity=0.276  Sum_probs=31.4

Q ss_pred             eEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEEeCC
Q 008305          300 MKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVFDDE  338 (570)
Q Consensus       300 ~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~d~d  338 (570)
                      ...|.+..++.+|.|+|++.+.+.-  ....+|.|+.|+.+
T Consensus        57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs   97 (185)
T cd08697          57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS   97 (185)
T ss_pred             EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence            5678888889999999999887743  34568999999965

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=84.28  E-value=5.1  Score=33.35  Aligned_cols=83  Identities=19%  Similarity=0.212  Sum_probs=45.2

Q ss_pred             ceEeCcccCCCCCCeeeeEEEEEeec-------CCCcEEEEEEEECCCCCCceeEEEEEeccccccCc--eEEEEEEec-
Q 008305          478 NRAKTRVAHDTLNPVWNQTFDFVVED-------GQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEG--EIQDSFHID-  547 (570)
Q Consensus       478 ~~~kT~v~~~t~nP~w~e~f~f~v~~-------~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~--~~~~w~~L~-  547 (570)
                      ..+.|.++. +.+|.+|-+-.|.|..       .....+.++++..-...-..+|.+++++.+++...  .......|- 
T Consensus        11 Etq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g   89 (107)
T PF11618_consen   11 ETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGERIHGSATLVG   89 (107)
T ss_dssp             --EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--EEEEEEE-B
T ss_pred             eeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCceEEEEEEEec
Confidence            456777765 7899999998888852       13457999999866321258999999999999544  345555663 


Q ss_pred             --CCCCeEEEEEEEEE
Q 008305          548 --GTKSGKLFLNLKWT  561 (570)
Q Consensus       548 --~~~~G~i~l~~~~~  561 (570)
                        +..-|.+...++.+
T Consensus        90 ~~~~~~g~l~y~~rl~  105 (107)
T PF11618_consen   90 VSGEDFGTLEYWIRLR  105 (107)
T ss_dssp             SSS-TSEEEEEEEEEE
T ss_pred             cCCCeEEEEEEEEEec
Confidence              34578888877765

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=83.74  E-value=5.4  Score=32.71  Aligned_cols=74  Identities=15%  Similarity=0.162  Sum_probs=46.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc---eEEeeeeCCCCCCeeecEEEEEEe--c-CCCCeEEEEEEeCCC
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR---MKTSKTINNELNPIWNEHFEFTVE--D-ASTQHLTVRVFDDEG  339 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~~~v~d~d~  339 (570)
                      +.+++..+.+.........+|-||.+.+-..+..   ...|+.+.-...+.|||...|.+.  + +....|.|.+|+...
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence            5566666666654432223578888877532221   224555554556899999988763  2 344679999998654

Outlier of C2 family.

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=83.43  E-value=12  Score=34.70  Aligned_cols=55  Identities=13%  Similarity=0.203  Sum_probs=42.2

Q ss_pred             ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCC--C--C-ceeEEEEEecc
Q 008305          478 NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTF--G--K-DKMGKCIMTLT  532 (570)
Q Consensus       478 ~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~--~--~-d~lG~~~i~l~  532 (570)
                      ...+|-+.+...+|.|+|++.+.+...  .+..|.|+++.....  .  . ..+|-+.++|-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            356888889999999999999988532  567899999875432  1  1 36999999986

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=82.97  E-value=6.9  Score=36.11  Aligned_cols=56  Identities=14%  Similarity=0.240  Sum_probs=35.2

Q ss_pred             ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCCC--C--ceeEEEEEeccc
Q 008305          478 NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTFG--K--DKMGKCIMTLTR  533 (570)
Q Consensus       478 ~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~~--~--d~lG~~~i~l~~  533 (570)
                      ....|.+.+++.+|.|+|+|.+.+...  .+..|.|++++.....  +  ..+|.+.++|.+
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            356788888999999999999988643  4678999999866542  1  489999999988

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	570
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		2e-10
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		2e-06
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		2e-08
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		4e-08
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		4e-08
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		6e-08
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		6e-08
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		7e-08
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		3e-07
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		8e-07
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		1e-06
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		2e-06
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		5e-06
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		2e-06
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		2e-06
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		2e-06
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		2e-06
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		2e-06
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		3e-06
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		4e-06
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		5e-06
1rlw_A	126	Calcium-Phospholipid Binding Domain From Cytosolic		5e-06
1rlw_A	126	Calcium-Phospholipid Binding Domain From Cytosolic		3e-05
3pyc_A	132	Crystal Structure Of Human Smurf1 C2 Domain Length		5e-06
1cjy_A	749	Human Cytosolic Phospholipase A2 Length = 749		5e-06
1cjy_A	749	Human Cytosolic Phospholipase A2 Length = 749		4e-05
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		5e-06
1bci_A	138	C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim		7e-06
1bci_A	138	C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim		4e-05
2jqz_A	131	Solution Structure Of The C2 Domain Of Human Smurf2		8e-06
1k5w_A	152	Three-Dimensional Structure Of The Synaptotagmin 1		1e-05
2lha_A	151	Solution Structure Of C2b With Ip6 Length = 151		1e-05
1tjm_A	159	Crystallographic Identification Of Sr2+ Coordinatio		1e-05
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		2e-05
2dmg_A	142	Solution Structure Of The Third C2 Domain Of Kiaa12		4e-05
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		5e-05
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		1e-04
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		3e-04
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		3e-04
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		5e-04
1w15_A	153	Rat Synaptotagmin 4 C2b Domain In The Presence Of C		5e-04

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 116/271 (42%), Gaps = 61/271 (22%)
Query: 268 VKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEH--FEFTVEDA 325
           V ++QA EL   D+ G SDP+V +F+ P + +   +K     LNP++NE   F+    + 
Sbjct: 23  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 82
Query: 326 STQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGXXXXXXXXXXXXXXXQRDTKNRGQV 385
           + + L + V+ D       +IIG                                     
Sbjct: 83  AGKTLVMAVY-DFDRFSKHDIIG------------------------------------- 104
Query: 386 HLELLYCPFGTESSLKNPFNS-DYSLTTLEKSLKSETSRAEAAELGKIATQKKSDVIVRG 444
                          K P N+ D+   T E        + E  +LG I    +  V   G
Sbjct: 105 -------------EFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRY-VPTAG 150
Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVV 501
            L++ ++ A+NL K+D+ G +DP+V + L + G    + KT +  +TLNP +N++F F V
Sbjct: 151 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 210
Query: 502 --EDGQHEMLILDVYDHDTFGK-DKMGKCIM 529
             E  Q   +++ V D+D  GK D +GK  +
Sbjct: 211 PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 241

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG 504
           L + +I A  LP +D+ G +DP+V V  L     + +T+V   TLNPV+N+ F F V   
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 505 Q--HEMLILDVYDHDTFGK 521
           +   + L++ VYD D F K
Sbjct: 81  ELAGKTLVMAVYDFDRFSK 99

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 433 ATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPV 492
           ++    DV   G+L + V+ A +L   D  GK+DPF +L+L    +R +T   +  LNP 
Sbjct: 2   SSGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLEL--GNDRLQTHTVYKNLNPE 59
Query: 493 WNQTFDFVVEDGQHEMLILDVYDHD 517
           WN+ F F ++D  H++L + V+D D
Sbjct: 60  WNKVFTFPIKD-IHDVLEVTVFDED 83

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTR---VAHDTLNPVWNQT--FD 498
           G+L++T+I A NL  +DL G +DP+V   L   G R K R   +  +TLNP +N+   FD
Sbjct: 153 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 212
Query: 499 FVVEDGQHEMLILDVYDHDTFGKDK-MGKC 527
              E  ++  L + V D+D  G ++ +G C
Sbjct: 213 VAPESVENVGLSIAVVDYDCIGHNEVIGVC 242

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTR---VAHDTLNPVWNQT--FD 498
           G+L++T+I A NL  +DL G +DP+V   L   G R K R   +  +TLNP +N+   FD
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 499 FVVEDGQHEMLILDVYDHDTFGKDK-MGKC 527
              E  ++  L + V D+D  G ++ +G C
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVC 241

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDF--- 499
           L  T+I A+ L  +D  G ADP+V L L       N+ +T+   +T NPVWN+T  +   
Sbjct: 31  LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 500 VVEDGQHEMLILDVYDHDTFGKDK 523
             ED Q + L + V D D FG ++
Sbjct: 91  TEEDMQRKTLRISVCDEDKFGHNE 114

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 444 GVLSITVIAAENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQTF---DF 499
             L++ ++ A+ LP  D  G +DPFV +  L    ++ +T+V    LNP WN+TF    F
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 500 VVEDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRV 534
             E     +L L V D+D F + D +G+  + L +V
Sbjct: 86  PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDF--- 499
           L  T+I A+ L  +D  G ADP+V L L       N+ +T+   +T NPVWN+T  +   
Sbjct: 29  LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 500 VVEDGQHEMLILDVYDHDTFGKDK 523
             ED Q + L + V D D FG ++
Sbjct: 89  TEEDMQRKTLRISVCDEDKFGHNE 112

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 414 EKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQL 473
           E+ + +E  + E A   +  +QK S +   G L + VI A  L      GK++P+  + +
Sbjct: 362 EQYIDTEKKQREKAYQAR--SQKTSGI---GRLMVHVIEATELKACKPNGKSNPYCEISM 416
Query: 474 KKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDK-MGKCIMTLT 532
                   TR   DTLNP WN    F ++D   ++L L ++D D F  D  +G+  + + 
Sbjct: 417 --GSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVA 474
Query: 533 RVMMEGE 539
           ++  E E
Sbjct: 475 KIRTEQE 481

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 9/131 (6%)
Query: 430 GKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAH 486
           G+I  Q   D   R VL + V  A+NL  +D  G +DP+V L+L    K+ ++ KT+   
Sbjct: 20  GRIYIQAHID---REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK 76
Query: 487 DTLNPVWNQTFDFVV-EDGQHEMLILDVYDHD-TFGKDKMGKCIMTLTRVMMEGEIQDSF 544
            +LNP WN+TF F + E  +   L ++++D D T   D MG     ++ +   G +   F
Sbjct: 77  CSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWF 135
Query: 545 HIDGTKSGKLF 555
            +   + G+ F
Sbjct: 136 KLLSQEEGEYF 146

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAG-NR----AKTRVAHDTLNPVWNQTFDF 499
           +L + V++  +L K D+ G +DP+V L L  A  NR     +T+    TLNP WN+ F F
Sbjct: 22  ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 500 VVEDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMME 537
            V    H +L  +V+D +   +D  +G+  + L+ +  E
Sbjct: 82  RVNPSNHRLL-FEVFDENRLTRDDFLGQVDVPLSHLPTE 119

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEF 320
           K    + + +V A+ L  KD  G SDP+V + V   + R   +KTI   LNP+W E+F F
Sbjct: 14  KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKR---TKTIYGNLNPVWEENFHF 70
Query: 321 TVEDASTQHLTVRVFDDEGPM 341
              ++S + + VRV D++  +
Sbjct: 71  ECHNSSDR-IKVRVLDEDDDI 90

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDF 499
           +SITV+ A+ L   D  G +DP+V +Q+ K   R KT   +  LNPVW + F F
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKT--IYGNLNPVWEENFHF 70

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG 504
           L + +I A  LP +D+ G +DP+V V  L     + +T+V   TLNPV+N+ F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 505 Q--HEMLILDVYDHDTFGK 521
           +   + L++ VYD D F K
Sbjct: 96  ELGGKTLVMAVYDFDRFSK 114

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG 504
           L + +I A  LP +D+ G +DP+V V  L     + +T+V   TLNPV+N+ F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 505 Q--HEMLILDVYDHDTFGK 521
           +   + L++ VYD D F K
Sbjct: 96  ELGGKTLVMAVYDFDRFSK 114

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG 504
           L + +I A  LP +D+ G +DP+V V  L     + +T+V   TLNPV+N+ F F V   
Sbjct: 19  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 505 Q--HEMLILDVYDHDTFGK 521
           +   + L++ VYD D F K
Sbjct: 79  ELGGKTLVMAVYDFDRFSK 97

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG 504
           L + +I A  LP +D+ G +DP+V V  L     + +T+V   TLNPV+N+ F F V   
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 505 Q--HEMLILDVYDHDTFGK 521
           +   + L++ VYD D F K
Sbjct: 104 ELGGKTLVMAVYDFDRFSK 122

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 9/131 (6%)
Query: 430 GKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAH 486
           G+I  Q   D   R VL + V  A+NL  +D  G +DP+V L+L    K+ ++ KT+   
Sbjct: 161 GRIYIQAHID---REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK 217
Query: 487 DTLNPVWNQTFDFVV-EDGQHEMLILDVYDHD-TFGKDKMGKCIMTLTRVMMEGEIQDSF 544
            +LNP WN+TF F + E  +   L ++++D D T   D MG     ++ +   G +   F
Sbjct: 218 SSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWF 276
Query: 545 HIDGTKSGKLF 555
            +   + G+ F
Sbjct: 277 KLLSQEEGEYF 287

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDFVVE 502
           + +TV  A NL  +D  G +DP+V L+L    +   + KTR    TLNPVWN+TF F ++
Sbjct: 22  IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 503 DGQHE-MLILDVYDHD-TFGKDKMGKCIMTLTRVM 535
            G  E  L ++V+D D T   D MG     ++ ++
Sbjct: 82  PGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSELL 116

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDFVVE 502
           L +TV  A+NL  +D  G +DP+V L+L    K  ++ KT+    TLNP WN++F F ++
Sbjct: 18  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 503 DGQHE-MLILDVYDHD-TFGKDKMGKCIMTLTRVM 535
               +  L ++++D D T   D MG     ++ +M
Sbjct: 78  PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELM 112

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVE 502
            G L + +++A+ L   D +   DP+V L  +    ++       T  P WN+TF F V 
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT-TPEWNETFIFTVS 67
Query: 503 DGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFH---IDGTKSGKLFLNL 558
           +G  E L   ++D D   + D +G+  + L  V +EG I  + +    D    G++++ L
Sbjct: 68  EGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVAL 126
Query: 559 KWTPQ 563
            + P 
Sbjct: 127 SFKPS 131

>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 280 DLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEG 339
           D++   DP+V +F+    D  K ++  NN++NP+WNE FEF ++      L + + D   
Sbjct: 22  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD--A 79
Query: 340 PMLAPEIIGIAQIALKELEPG 360
             +  E +G A   +  ++ G
Sbjct: 80  NYVMDETLGTATFTVSSMKVG 100

>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 460 DLIGKADPFVVLQLKKA-GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDT 518
           D++   DP+V L +     +R +TR  ++ +NPVWN+TF+F+++  Q  +L + + D + 
Sbjct: 22  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81
Query: 519 FGKDKMGKCIMTLTRV 534
              + +G    T++ +
Sbjct: 82  VMDETLGTATFTVSSM 97

>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain Length = 132

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ 505
           + +TV+ A+NL K D     DPF  + +  +G    T    +TL+P WNQ +D  V  G+
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV--GK 64
Query: 506 HEMLILDVYDHDTFGKDKMGKCIMTLTRVM 535
            + + + V++H    K K G   +   R++
Sbjct: 65  TDSITISVWNHKKIHK-KQGAGFLGCVRLL 93

>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 280 DLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEG 339
           D++   DP+V +F+    D  K ++  NN++NP+WNE FEF ++      L + + D   
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD--A 94
Query: 340 PMLAPEIIGIAQIALKELEPG 360
             +  E +G A   +  ++ G
Sbjct: 95  NYVMDETLGTATFTVSSMKVG 115

>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 460 DLIGKADPFVVLQLKKA-GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDT 518
           D++   DP+V L +     +R +TR  ++ +NPVWN+TF+F+++  Q  +L + + D + 
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 519 FGKDKMGKCIMTLTRV 534
              + +G    T++ +
Sbjct: 97  VMDETLGTATFTVSSM 112

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDFVVE 502
           L +TV  A+NL  +D  G +DP+V L+L    K  ++ KT+    TLNP WN++F F ++
Sbjct: 19  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 503 DGQHE-MLILDVYDHD-TFGKDKMGKCIMTLTRVM 535
               +  L ++++D D T   D MG     ++ +M
Sbjct: 79  PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELM 113

>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 280 DLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEG 339
           D++   DP+V +F+    D  K ++  NN++NP+WNE FEF ++      L + + D   
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD--A 94
Query: 340 PMLAPEIIGIAQIALKELEPG 360
             +  E +G A   +  ++ G
Sbjct: 95  NYVMDETLGTATFTVSSMKVG 115

>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 460 DLIGKADPFVVLQLKKA-GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDT 518
           D++   DP+V L +     +R +TR  ++ +NPVWN+TF+F+++  Q  +L + + D + 
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 519 FGKDKMGKCIMTLTRV 534
              + +G    T++ +
Sbjct: 97  VMDETLGTATFTVSSM 112

>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2 Length = 131

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ 505
           L +TV+ A+NL K D     DPF  + +  +G    T    +TL+P WNQ +D  +  G+
Sbjct: 5   LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYI--GK 62
Query: 506 HEMLILDVYDHDTFGKDKMGKCIMTLTRVM 535
            + + + V++H    K K G   +   R++
Sbjct: 63  SDSVTISVWNHKKIHK-KQGAGFLGCVRLL 91

>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 6/92 (6%)
Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFV 500
           G L++ ++ A+NL K+D+ G +DP+V + L + G    + KT +  +TLNP +N++F F 
Sbjct: 18  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 77
Query: 501 V--EDGQHEMLILDVYDHDTFGK-DKMGKCIM 529
           V  E  Q   +++ V D+D  GK D +GK  +
Sbjct: 78  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 109

>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 6/92 (6%)
Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFV 500
           G L++ ++ A+NL K+D+ G +DP+V + L + G    + KT +  +TLNP +N++F F 
Sbjct: 17  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 76
Query: 501 V--EDGQHEMLILDVYDHDTFGK-DKMGKCIM 529
           V  E  Q   +++ V D+D  GK D +GK  +
Sbjct: 77  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 108

>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 6/92 (6%)
Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFV 500
           G L++ ++ A+NL K+D+ G +DP+V + L + G    + KT +  +TLNP +N++F F 
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 501 V--EDGQHEMLILDVYDHDTFGK-DKMGKCIM 529
           V  E  Q   +++ V D+D  GK D +GK  +
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 116

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN----RAKTRVAHDTLNPVWNQTFDFV 500
           ++ + VIA   L K D++G +DP+V + L    N      +T+    +LNP WN+   F 
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 501 VEDGQHEMLILDVYDHDTFGKD 522
           V   QH +L  +V+D +   +D
Sbjct: 81  VHPQQHRLL-FEVFDENRLTRD 101

>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228 Protein Length = 142

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDF 499
           R  L + V A  NL      G +DP+V + L   K+   R KT V+  TLNPV++Q+FDF
Sbjct: 23  RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81
Query: 500 VVEDGQHEMLILDVYDHDTFG---KDK--MGKCIMTLT 532
            V   + +   LDV   ++ G   KDK  +GK ++ L 
Sbjct: 82  SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALA 119

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDFVVE 502
           L +TV  A+NL   D  G +DP+V L+L    K  ++ KT+    TLNP WN++F F ++
Sbjct: 20  LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 503 DGQHE-MLILDVYDHD 517
               +  L ++++D D
Sbjct: 80  PSDKDRRLSVEIWDWD 95

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 28/136 (20%)
Query: 430 GKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFV------------VLQLKKAG 477
           G+I  Q   D+   G L I ++ A NL   D  G +DPFV            V+Q   A 
Sbjct: 7   GEIQLQINYDL---GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 478 NRAKTRVAHDTLNPVWNQTFDF---VVEDGQHEMLILDVYDHDTF-GKDKMGKCIMTLTR 533
            + +T+    +LNP WNQT  +    +E    + L + V+D+D F   D +G+ ++ L+ 
Sbjct: 64  YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS- 122
Query: 534 VMMEGEIQDSFHIDGT 549
                    + H+D T
Sbjct: 123 --------STSHLDNT 130

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLK-KAGNRAK--TRVAHDTLNPVWNQTF-- 497
           +G L + +I   +L  +D  G +DPFV L LK   G +AK  T++   TLNP +N+ F  
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 498 DFVVEDGQHEMLILDVYDHDTFGK--DKMGKCIMTLT 532
           D    D   + L + V+D+D  GK  D +G C + ++
Sbjct: 74  DIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 109

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLK-KAGNRAK--TRVAHDTLNPVWNQTF-- 497
           +G L + +I   +L  +D  G +DPFV L LK   G +AK  T++   TLNP +N+ F  
Sbjct: 36  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 498 DFVVEDGQHEMLILDVYDHDTFGK--DKMGKCIMTLT 532
           D    D   + L + V+D+D  GK  D +G C + ++
Sbjct: 96  DIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 131

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLK-KAGNRAK--TRVAHDTLNPVWNQTF-- 497
           +G L + +I   +L   D  G +DPFV L LK   G +AK  T++   TLNP +N+ F  
Sbjct: 36  QGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 498 DFVVEDGQHEMLILDVYDHDTFGK--DKMGKCIMTLT 532
           D    D   + L + V+D+D  GK  D +G C + ++
Sbjct: 96  DIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 131

>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDFVV- 501
           L++ V+ A +LPK D+ G +DP+V + L   KK  ++ KT V   T N V+N+ F F + 
Sbjct: 32  LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 502 ----EDGQHEMLILD 512
               E+   E L+LD
Sbjct: 92  CESLEEISVEFLVLD 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	570
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	9e-43
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	4e-20
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	8e-13
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-40
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-18
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-13
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	8e-37
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	3e-32
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	5e-35
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	5e-26
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	6e-34
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	3e-29
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	1e-33
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	2e-30
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-33
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-27
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-33
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	3e-28
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-28
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	4e-23
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	3e-28
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-25
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	9e-27
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-24
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	1e-26
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-25
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	9e-26
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-17
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-24
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-19
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	3e-24
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-21
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	5e-24
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	1e-16
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	8e-23
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	5e-19
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	9e-23
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	4e-20
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	5e-22
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	5e-22
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-21
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	1e-19
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	4e-21
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	1e-16
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	5e-21
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	5e-17
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	9e-21
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	2e-16
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-20
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	8e-15
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-19
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-13
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	4e-19
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	4e-17
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	4e-19
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	2e-13
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	4e-19
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	2e-13
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	4e-19
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	3e-16
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-18
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	3e-16
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-18
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-17
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	3e-18
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	6e-08
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	3e-18
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	9e-16
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	5e-18
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	1e-15
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	9e-18
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-17
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-17
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	2e-15
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	3e-17
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-14
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	4e-17
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	6e-10
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-13
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-10
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	4e-11
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	5e-07
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	5e-08
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	1e-05
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	5e-08
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	1e-05
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	9e-08
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	2e-06
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	3e-07
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	2e-05
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  153 bits (389), Expect = 9e-43
 Identities = 72/276 (26%), Positives = 122/276 (44%), Gaps = 59/276 (21%)

Query: 262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFT 321
               L V ++QA EL   D+ G SDP+V +F+ P + +   +K     LNP++NE F F 
Sbjct: 17  QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 76

Query: 322 V--EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDT 379
           V   + + + L + V+D +      +IIG  ++ +  ++ G V + W  L    K +++ 
Sbjct: 77  VPYSELAGKTLVMAVYDFD-RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE- 134

Query: 380 KNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSETSRAEAAELGKIATQKKSD 439
              G +   L Y P                                              
Sbjct: 135 -KLGDICFSLRYVP---------------------------------------------- 147

Query: 440 VIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA---KTRVAHDTLNPVWNQT 496
               G L++ ++ A+NL K+D+ G +DP+V + L + G R    KT +  +TLNP +N++
Sbjct: 148 --TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNES 205

Query: 497 FDFVV--EDGQHEMLILDVYDHDTFGK-DKMGKCIM 529
           F F V  E  Q   +++ V D+D  GK D +GK  +
Sbjct: 206 FSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 241

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 89.9 bits (223), Expect = 4e-20
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 10/131 (7%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL-KKAGNRAKTRVAHDTLNPVWNQTFDFVV 501
              L + +I A  LP +D+ G +DP+V + L      + +T+V   TLNPV+N+ F F V
Sbjct: 18  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 77

Query: 502 --EDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQDSFHIDGTKS------G 552
              +   + L++ VYD D F K   +G+  + +  V      ++   +   +       G
Sbjct: 78  PYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLG 137

Query: 553 KLFLNLKWTPQ 563
            +  +L++ P 
Sbjct: 138 DICFSLRYVPT 148

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 68.3 bits (167), Expect = 8e-13
 Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 7/112 (6%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFT 321
           G L V +++AK L   D+ G SDP+V I +     R+K  KT    N LNP +NE F F 
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209

Query: 322 V--EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK 371
           V  E      + V V  D   +   + IG   +             W  ++ 
Sbjct: 210 VPFEQIQKVQVVVTVL-DYDKIGKNDAIGKVFVGYNSTGAE--LRHWSDMLA 258

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  148 bits (375), Expect = 1e-40
 Identities = 72/288 (25%), Positives = 120/288 (41%), Gaps = 62/288 (21%)

Query: 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEF 320
                L V+++QA +L  KD  G SDP+V I++ P R +   +K     LNPI+NE F+F
Sbjct: 17  YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 76

Query: 321 TV--EDASTQHLTVRVFDDEGPMLAPEIIGIAQI--ALKELEPGKVKDVWLKLVKDVKVQ 376
           +V   + + + L   V+D +      ++IG   +   L+  E    + +W  +++    +
Sbjct: 77  SVPLAELAQRKLHFSVYDFD-RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEK 135

Query: 377 RDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSETSRAEAAELGKIATQK 436
            D    G+++  L Y P                                           
Sbjct: 136 AD---LGELNFSLCYLP------------------------------------------- 149

Query: 437 KSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA---KTRVAHDTLNPVW 493
                  G+L++T+I A NL  +DL G +DP+V   L   G R    KT +  +TLNP +
Sbjct: 150 -----TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTY 204

Query: 494 NQTFDFVV--EDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEG 538
           N+   F V  E  ++  L + V D+D  G  + +G C +        G
Sbjct: 205 NEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG 252

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 86.0 bits (213), Expect = 1e-18
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 11/132 (8%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL-KKAGNRAKTRVAHDTLNPVWNQTFDFVV 501
              L + ++ A +LP  D  G +DP+V + L      + +T+V   TLNP++N+TF F V
Sbjct: 19  SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 78

Query: 502 --EDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQDSFHID-------GTKS 551
              +     L   VYD D F +   +G+ ++     + E         D           
Sbjct: 79  PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADL 138

Query: 552 GKLFLNLKWTPQ 563
           G+L  +L + P 
Sbjct: 139 GELNFSLCYLPT 150

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 18/138 (13%)

Query: 260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEH 317
           L   G L V +++A  L   DL G SDP+V   +     R+K  KT    N LNP +NE 
Sbjct: 148 LPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEA 207

Query: 318 FEFTV--EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELE-------------PGKV 362
             F V  E      L++ V  D   +   E+IG+ ++  +  +             P K 
Sbjct: 208 LVFDVAPESVENVGLSIAVV-DYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKP 266

Query: 363 KDVWLKLVKDVKVQRDTK 380
            + W +LV++  +   TK
Sbjct: 267 VEHWHQLVEEKTLSSFTK 284

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  132 bits (334), Expect = 8e-37
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 11/139 (7%)

Query: 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEF 320
            P GTL+V LV AK L + D +   DP+V +  R      K++        P WNE F F
Sbjct: 7   GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--QDQKSNVAEGMGTTPEWNETFIF 64

Query: 321 TVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL-EPGKVKDVWLKLVKDVKVQRDT 379
           TV + +T+ L  ++FD +      + +G A I L+ +   G +      +VK      D 
Sbjct: 65  TVSEGTTE-LKAKIFDKD-VGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DE 116

Query: 380 KNRGQVHLELLYCPFGTES 398
           + +G++ + L + P G  S
Sbjct: 117 EYKGEIWVALSFKPSGPSS 135

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  119 bits (301), Expect = 3e-32
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 8/124 (6%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHD-TLNPVWNQTFDFVVE 502
           G L + +++A+ L   D +   DP+V L  +      K+ VA      P WN+TF F V 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCR--TQDQKSNVAEGMGTTPEWNETFIFTVS 67

Query: 503 DGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHI---DGTKSGKLFLNL 558
           +G  E L   ++D D   + D +G+  + L  V +EG I  + +    D    G++++ L
Sbjct: 68  EGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVAL 126

Query: 559 KWTP 562
            + P
Sbjct: 127 SFKP 130

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  128 bits (324), Expect = 5e-35
 Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 8/149 (5%)

Query: 257 DLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTS---KTINNELNPI 313
           +L       + VK++    L  KD++G SDP+V + +      + TS   KTI   LNP 
Sbjct: 1   ELHNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPK 60

Query: 314 WNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKD- 372
           WNE   F V       +   VFD+   +   + +G   + L  L     +       KD 
Sbjct: 61  WNEEILFRVLP-QRHRILFEVFDENR-LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDF 118

Query: 373 --VKVQRDTKNRGQVHLELLYCPFGTESS 399
                   ++ +G + L++ Y P      
Sbjct: 119 VLHPRSHKSRVKGYLRLKMTYLPKNGSED 147

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  103 bits (259), Expect = 5e-26
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 17/136 (12%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQL----KKAGNRAKTRVAHDTLNPVWNQTFDF 499
            V+ + VIA   L K D++G +DP+V + L           +T+    +LNP WN+   F
Sbjct: 8   RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67

Query: 500 VVEDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSF-----------HID 547
            V   Q   ++ +V+D +   + D +G+  + L  +  E    +                
Sbjct: 68  RVLP-QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK 126

Query: 548 GTKSGKLFLNLKWTPQ 563
               G L L + + P+
Sbjct: 127 SRVKGYLRLKMTYLPK 142

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  124 bits (313), Expect = 6e-34
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 13/130 (10%)

Query: 266 LDVKLVQAKELTN---KDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTV 322
             V +++A ++T     D++   DP+V +F+    D  K ++  NN++NP+WNE FEF +
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 323 EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNR 382
           +      L + + D     +  E +G A   +  ++ G+ K+V            +    
Sbjct: 65  DPNQENVLEITLMDAN--YVMDETLGTATFTVSSMKVGEKKEVPFIF--------NQVTE 114

Query: 383 GQVHLELLYC 392
             + + L   
Sbjct: 115 MVLEMSLEVA 124

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  111 bits (279), Expect = 3e-29
 Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 444 GVLSITVIAAENLPKV---DLIGKADPFVVLQLKKAGN-RAKTRVAHDTLNPVWNQTFDF 499
              ++ V+ A  + K    D++   DP+V L +    + R +TR  ++ +NPVWN+TF+F
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 500 VVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLK 559
           +++  Q  +L + + D +    + +G    T++ + +  + +  F  +      L ++L+
Sbjct: 63  ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLE 122

Query: 560 WT 561
             
Sbjct: 123 VA 124

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  123 bits (312), Expect = 1e-33
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 10/137 (7%)

Query: 256 SDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWN 315
           S  ++K  G L VK+++A +L   D  GKSDPF ++ +    DR++T  T+   LNP WN
Sbjct: 5   SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN--DRLQT-HTVYKNLNPEWN 61

Query: 316 EHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKV 375
           + F F ++D     L V VF DE     P+ +G   I L  +  G+     LK       
Sbjct: 62  KVFTFPIKD-IHDVLEVTVF-DEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL--- 116

Query: 376 QRDTKNRGQVHLELLYC 392
             +   +G ++LE+   
Sbjct: 117 --EQAFKGVIYLEMDLI 131

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  114 bits (287), Expect = 2e-30
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 9/122 (7%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVED 503
           G+L + V+ A +L   D  GK+DPF +L+L     R +T   +  LNP WN+ F F ++D
Sbjct: 13  GILQVKVLKAADLLAADFSGKSDPFCLLELGND--RLQTHTVYKNLNPEWNKVFTFPIKD 70

Query: 504 GQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQD----SFHIDGTKSGKLFLNL 558
                L + V+D D     D +GK  + L  +  +G+       +  ++    G ++L +
Sbjct: 71  IHDV-LEVTVFDEDGDKPPDFLGKVAIPLLSI-RDGQPNCYVLKNKDLEQAFKGVIYLEM 128

Query: 559 KW 560
             
Sbjct: 129 DL 130

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  123 bits (311), Expect = 2e-33
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 9/139 (6%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
           G L V +  A  +  K   GK DP V +  +   ++ KT K ++NELNP+WNE  EF + 
Sbjct: 7   GMLRVIVESASNI-PKTKFGKPDPIVSVIFKD--EKKKT-KKVDNELNPVWNEILEFDLR 62

Query: 324 DA---STQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTK 380
                 +  L + V D E  +   ++IG A +ALK+L   + + +  KL+  +  ++   
Sbjct: 63  GIPLDFSSSLGIIVKDFET-IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN-EKGQD 120

Query: 381 NRGQVHLELLYCPFGTESS 399
               + L + Y P    SS
Sbjct: 121 TGATIDLVIGYDPPSGPSS 139

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  107 bits (268), Expect = 1e-27
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 14/130 (10%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVV-- 501
           G+L + V +A N+PK    GK DP V +  K    + KT+   + LNPVWN+  +F +  
Sbjct: 7   GMLRVIVESASNIPK-TKFGKPDPIVSVIFK--DEKKKTKKVDNELNPVWNEILEFDLRG 63

Query: 502 -EDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSF-------HIDGTKSG 552
                   L + V D +T G+   +G   + L  +  +      +               
Sbjct: 64  IPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGA 123

Query: 553 KLFLNLKWTP 562
            + L + + P
Sbjct: 124 TIDLVIGYDP 133

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  123 bits (311), Expect = 2e-33
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 8/139 (5%)

Query: 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTS---KTINNELNPIWNEH 317
           +    + V+++    L  KD++G SDP+V + +    + + TS   KTI   LNP WNE 
Sbjct: 17  ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE 76

Query: 318 FEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQ- 376
             F V       L   VFD+   +   + +G   + L  L     +       KD  +  
Sbjct: 77  ILFRVHP-QQHRLLFEVFDENR-LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP 134

Query: 377 --RDTKNRGQVHLELLYCP 393
               ++ +G + L++ Y P
Sbjct: 135 RSHKSRVKGYLRLKMTYLP 153

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  109 bits (274), Expect = 3e-28
 Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 17/153 (11%)

Query: 426 AAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQL----KKAGNRAK 481
            A           D     ++ + VIA   L K D++G +DP+V + L           +
Sbjct: 2   MATCAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQ 61

Query: 482 TRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEI 540
           T+    +LNP WN+   F V   QH  L+ +V+D +   + D +G+  + L  +  E   
Sbjct: 62  TKTIKKSLNPKWNEEILFRVHPQQHR-LLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120

Query: 541 QDSFHI-----------DGTKSGKLFLNLKWTP 562
            +  +                 G L L + + P
Sbjct: 121 LERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score =  119 bits (299), Expect = 2e-28
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 5/122 (4%)

Query: 250 ILPGDYSDLELKPCGTLDVKLVQAKELTNK---DLIGKSDPFVVIFVRPLRDRMKTSKTI 306
           I P  +  +E +      V +++A ++T     D++   DP+V +F+    D  K ++  
Sbjct: 4   IDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF 63

Query: 307 NNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVW 366
           NN++NP+WNE FEF ++      L + + D     +  E +G A   +  ++ G+ K+V 
Sbjct: 64  NNDINPVWNETFEFILDPNQENVLEITLMDAN--YVMDETLGTATFTVSSMKVGEKKEVP 121

Query: 367 LK 368
             
Sbjct: 122 FI 123

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score =  102 bits (255), Expect = 4e-23
 Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 444 GVLSITVIAAENLPK---VDLIGKADPFVVLQLKKAGN-RAKTRVAHDTLNPVWNQTFDF 499
              ++ V+ A  + K    D++   DP+V L +    + R +TR  ++ +NPVWN+TF+F
Sbjct: 18  HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77

Query: 500 VVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLK 559
           +++  Q  +L + + D +    + +G    T++ + +  + +  F  +      L ++L+
Sbjct: 78  ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLE 137

Query: 560 WTPQ 563
               
Sbjct: 138 VCSC 141

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  108 bits (272), Expect = 3e-28
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 16/128 (12%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ 505
           + +TV+ A+NL K D     DPF  + +  +G    T    +TL+P WNQ +D  V    
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK-- 64

Query: 506 HEMLILDVYDHDTFGKDK----MGKCIMTLTRVMMEGEIQDSFHIDGTK---------SG 552
            + + + V++H    K +    +G   +    +    +      +D  K          G
Sbjct: 65  TDSITISVWNHKKIHKKQGAGFLGCVRLLSNAI-SRLKDTGYQRLDLCKLNPSDTDAVRG 123

Query: 553 KLFLNLKW 560
           ++ ++L+ 
Sbjct: 124 QIVVSLQT 131

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  100 bits (252), Expect = 2e-25
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 9/130 (6%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA 325
           + + ++ AK L  KD     DPF  I V        T  T+ N L+P WN+H++  V   
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHST-DTVKNTLDPKWNQHYDLYVGKT 65

Query: 326 STQHLTV----RVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKN 381
            +  ++V    ++   +G       +G  ++    +   K        +  +        
Sbjct: 66  DSITISVWNHKKIHKKQG----AGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAV 121

Query: 382 RGQVHLELLY 391
           RGQ+ + L  
Sbjct: 122 RGQIVVSLQT 131

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  105 bits (264), Expect = 9e-27
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVE 502
           +  L ITVI+A+            P+V + +   G   KT   ++T +P W Q    +V 
Sbjct: 35  KSQLQITVISAKLKENKKNWFGPSPYVEVTVD--GQSKKTEKCNNTNSPKWKQPLTVIVT 92

Query: 503 DGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRV-----MMEGEIQDSFHIDGTKS----- 551
                 L   V+ H T   D  +G   + +        M   E+  +  + G K      
Sbjct: 93  PVSK--LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETI 150

Query: 552 GKLFLNL 558
           G L + L
Sbjct: 151 GDLSICL 157

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 99.2 bits (247), Expect = 2e-24
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 10/134 (7%)

Query: 259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHF 318
            L     L + ++ AK   NK       P+V + V     + K ++  NN  +P W +  
Sbjct: 31  SLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPL 87

Query: 319 EFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL---EPGKVKDVWLKLVKDVKV 375
              V   S   L  RV+  +  + +  ++G A + + E       K+++V + L +    
Sbjct: 88  TVIVTPVSK--LHFRVWSHQ-TLKSDVLLGTAALDIYETLKSNNMKLEEVVVTL-QLGGD 143

Query: 376 QRDTKNRGQVHLEL 389
           +  T+  G + + L
Sbjct: 144 KEPTETIGDLSICL 157

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  104 bits (261), Expect = 1e-26
 Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 19/144 (13%)

Query: 256 SDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWN 315
            D   K    + + +V A+ L  KD  G SDP+V + V     + +T KTI   LNP+W 
Sbjct: 9   LDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK--TKKRT-KTIYGNLNPVWE 65

Query: 316 EHFEFTVEDASTQHLTVRVFD----------DEGPMLAPEIIGIAQIALKELEPGKVKDV 365
           E+F F   + S+  + VRV D                + + +G   I ++ L      DV
Sbjct: 66  ENFHFECHN-SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE--MDV 122

Query: 366 WLKLVKDVKVQRDTKNRGQVHLEL 389
           W  L    K    +   G + L +
Sbjct: 123 WYNL---DKRTDKSAVSGAIRLHI 143

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  101 bits (253), Expect = 2e-25
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 18/131 (13%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVED 503
             +SITV+ A+ L   D  G +DP+V +Q+ K   + +T+  +  LNPVW + F F   +
Sbjct: 17  AKISITVVCAQGLQAKDKTGSSDPYVTVQVGKT--KKRTKTIYGNLNPVWEENFHFECHN 74

Query: 504 GQHEMLILDVYDHDTFGK------------DKMGKCIMTLTRVMMEGEIQ---DSFHIDG 548
              + + + V D D   K            D +G+ I+ +  +  E ++    D      
Sbjct: 75  -SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKS 133

Query: 549 TKSGKLFLNLK 559
             SG + L++ 
Sbjct: 134 AVSGAIRLHIS 144

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  102 bits (255), Expect = 9e-26
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 6/118 (5%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDF 499
           R VL + V  A+NL  +D  G +DP+V L+L    K+ ++ KT+    +LNP WN+TF F
Sbjct: 30  REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89

Query: 500 VVEDGQHE-MLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLF 555
            +++   +  L ++++D D   + D MG     ++ +     +   F +   + G+ F
Sbjct: 90  QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGEYF 146

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 79.0 bits (195), Expect = 1e-17
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFT 321
             L V +  AK L   D  G SDP+V + + P        KT  I   LNP WNE F F 
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90

Query: 322 VEDASTQH-LTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVK 374
           ++++     L+V ++ D       + +G     + EL+   V   W KL+   +
Sbjct: 91  LKESDKDRRLSVEIW-DWDLTSRNDFMGSLSFGISELQKAGVDG-WFKLLSQEE 142

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 98.4 bits (245), Expect = 2e-24
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 15/131 (11%)

Query: 444 GVLSITVIAAENLPKVDLIGK-----------ADPFVVLQLKKAGNRAKTRVAHDTLNPV 492
           G+L I +  A +L       +            DP++ L +  +    +T     T +P 
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDS-RIGQTATKQKTNSPA 64

Query: 493 WNQTFDFVVEDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQDSFHIDGTKS 551
           W+  F   V +G+   + L V+     G D  +  C +    ++  G       ID    
Sbjct: 65  WHDEFVTDVCNGRK--IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPE 122

Query: 552 GKLFLNLKWTP 562
           GK+++ +  + 
Sbjct: 123 GKVYVIIDLSG 133

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 84.5 bits (209), Expect = 1e-19
 Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 28/139 (20%)

Query: 264 GTLDVKLVQAKELTNKDLIGK-----------SDPFVVIFVRPLRDRMKTSKTINNELNP 312
           G L +K+ +A  L       +            DP++ + V     R+  + T     +P
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD--SRIGQTATKQKTNSP 63

Query: 313 IWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL--EPGKVKDVWLKLV 370
            W++ F   V +   + + + VF D  P+   + +    I  +EL     +  + W+ L 
Sbjct: 64  AWHDEFVTDVCNG--RKIELAVFHDA-PIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE 120

Query: 371 KDVKVQRDTKNRGQVHLEL 389
                       G+V++ +
Sbjct: 121 P----------EGKVYVII 129

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 98.1 bits (244), Expect = 3e-24
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 419 SETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGK----------ADPF 468
           S      ++ L    +     +   G L + +  A  L       +           DP+
Sbjct: 4   SHHHHHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPY 63

Query: 469 VVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDK-MGKC 527
           + + + +     +T     T  P +N+ F   V DG H  L L V+     G D  +  C
Sbjct: 64  LTVSVDQV-RVGQTSTKQKTNKPTYNEEFCANVTDGGH--LELAVFHETPLGYDHFVANC 120

Query: 528 IMTLTRVMMEGEIQDSFH--IDGTKSGKLFLNLKWT 561
            +    ++      D+F   +D    GK+F+ +  T
Sbjct: 121 TLQFQELLRTTGASDTFEGWVDLEPEGKVFVVITLT 156

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 90.8 bits (225), Expect = 1e-21
 Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 29/159 (18%)

Query: 245 RQIIPILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGK----------SDPFVVIFVR 294
                +  G  S   +K  G L V++ +A  L       +           DP++ + V 
Sbjct: 10  HSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD 69

Query: 295 PLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIAL 354
             + R+  + T      P +NE F   V D    HL + VF +  P+     +    +  
Sbjct: 70  --QVRVGQTSTKQKTNKPTYNEEFCANVTDG--GHLELAVFHET-PLGYDHFVANCTLQF 124

Query: 355 KEL----EPGKVKDVWLKLVKDVKVQRDTKNRGQVHLEL 389
           +EL          + W+ L             G+V + +
Sbjct: 125 QELLRTTGASDTFEGWVDLEP----------EGKVFVVI 153

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 94.0 bits (234), Expect = 8e-23
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 5/146 (3%)

Query: 409 SLTTLEKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPF 468
               +  S+  +    E  +LGK+      D      L + +I A  LP +D+ G +DP+
Sbjct: 8   GGGGILDSMVEKEEPKEEEKLGKLQYSLDYD-FQNNQLLVGIIQAAELPALDMGGTSDPY 66

Query: 469 VVLQLK-KAGNRAKTRVAHDTLNPVWNQTFDFVV--EDGQHEMLILDVYDHDTFGK-DKM 524
           V + L      + +T+V   TLNPV+N+ F F V   +   + L++ VYD D F K D +
Sbjct: 67  VKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDII 126

Query: 525 GKCIMTLTRVMMEGEIQDSFHIDGTK 550
           G+  + +  V      ++   +   +
Sbjct: 127 GEFKVPMNTVDFGHVTEEWRDLQSAE 152

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 82.9 bits (205), Expect = 5e-19
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTV- 322
             L V ++QA EL   D+ G SDP+V +F+ P + +   +K     LNP++NE F F V 
Sbjct: 42  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 101

Query: 323 -EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
             +   + L + V+ D       +IIG  ++ +  ++ G V + W  L
Sbjct: 102 YSELGGKTLVMAVY-DFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 148

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 93.6 bits (233), Expect = 9e-23
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 7/117 (5%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLK-KAGNRAKTRVAHDTLNPVWNQTFDF-- 499
              L++ ++ A+ LP  D  G +DPFV + L     ++ +T+V    LNP WN+TF F  
Sbjct: 25  ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 84

Query: 500 -VVEDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHI--DGTKSG 552
              E     +L L V D+D F + D +G+  + L +V +         +   G  SG
Sbjct: 85  FPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSSG 141

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 85.9 bits (213), Expect = 4e-20
 Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 4/109 (3%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEF--- 320
            TL VK+++A+EL  KD  G SDPFV I++ P +     +K     LNP WNE F F   
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85

Query: 321 TVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
             E    + L ++V  D       + IG   I L +++  +++  W  L
Sbjct: 86  PYEKVVQRILYLQVL-DYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 91.3 bits (227), Expect = 5e-22
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDF 499
              L  T+I A+ L  +D  G ADP+V L L       N+ +T+   +T NPVWN+T  +
Sbjct: 28  NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87

Query: 500 VV---EDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGE 539
                ED Q + L + V D D FG  + +G+   +L ++     
Sbjct: 88  HGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQR 131

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 91.3 bits (227), Expect = 5e-22
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKT--SKTINNELNPIWNEHFEF- 320
             L   +++AK L   D  G +DP+V + + P   +     +KT+ N  NP+WNE  ++ 
Sbjct: 29  SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88

Query: 321 --TVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDV 373
             T ED   + L + V  DE      E IG  + +LK+L+  + K+  + L + +
Sbjct: 89  GITEEDMQRKTLRISVC-DEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVI 142

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 89.7 bits (223), Expect = 2e-21
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLK-KAGNRAKTRVAHDTLNPVWNQTFDFVV 501
              L + +I A  LP +D+ G +DP+V + L      + +T+V   TLNPV+N+ F F V
Sbjct: 33  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92

Query: 502 --EDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEI 540
              +   + L++ VYD D F K D +G+  + +  V      
Sbjct: 93  PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT 134

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 84.3 bits (209), Expect = 1e-19
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTV- 322
             L V ++QA EL   D+ G SDP+V +F+ P + +   +K     LNP++NE F F V 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 323 -EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
             +   + L + V+ D       +IIG  ++ +  ++ G V + W  L
Sbjct: 94  YSELGGKTLVMAVY-DFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 88.9 bits (221), Expect = 4e-21
 Identities = 23/106 (21%), Positives = 52/106 (49%), Gaps = 9/106 (8%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDF 499
              L +T++ A++LP  +     +P+V +     +   N+ +T+    TL P WNQTF +
Sbjct: 20  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79

Query: 500 VV---EDGQHEMLILDVYDHDTFGKDK---MGKCIMTLTRVMMEGE 539
                 + +  ML + ++D     +++   +G+ ++ L   +++ E
Sbjct: 80  SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 125

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFT 321
             L V ++ AK+L +++     +P+V I+  P R      +T  +   L P WN+ F ++
Sbjct: 21  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80

Query: 322 V---EDASTQHLTVRVFD-DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
                +   + L + ++D         E +G   I L+          W KL
Sbjct: 81  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 131

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 88.6 bits (220), Expect = 5e-21
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 16/109 (14%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL------------KKAGNRAKTRVAHDTLN 490
            G L I ++ A NL   D  G +DPFV + L              A  + +T+    +LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 491 PVWNQTFDFVV---EDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVM 535
           P WNQT  +     E    + L + V+D+D F   D +G+ ++ L+   
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTS 125

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 77.1 bits (190), Expect = 5e-17
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 15/120 (12%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKT-----------SKTINNELNP 312
           G L + ++QA+ L  +D  G SDPFV +++ P R ++             +K +   LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 313 IWNEHFEF---TVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
            WN+   +   ++E    + L V V+ D     + + +G   I L           W  L
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVW-DYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 87.3 bits (217), Expect = 9e-21
 Identities = 23/106 (21%), Positives = 52/106 (49%), Gaps = 9/106 (8%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDF 499
              L +T++ A++LP  +     +P+V +     +   N+ +T+    TL P WNQTF +
Sbjct: 17  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76

Query: 500 VV---EDGQHEMLILDVYDHDTFGKDK---MGKCIMTLTRVMMEGE 539
                 + +  ML + ++D     +++   +G+ ++ L   +++ E
Sbjct: 77  SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 122

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEF- 320
             L V ++ AK+L +++     +P+V I+  P R      +T  +   L P WN+ F + 
Sbjct: 18  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77

Query: 321 --TVEDASTQHLTVRVFD-DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
                +   + L + ++D         E +G   I L+          W KL
Sbjct: 78  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 128

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 87.4 bits (217), Expect = 1e-20
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA---KTRVAHDTLNPVWNQTFDF 499
              + + +I A NL  +D+ G +DP+V + L     R    KT      LNP++N++F F
Sbjct: 15  ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAF 74

Query: 500 VV--EDGQHEMLILDVYDHDTFGK-DKMGKCIM 529
            +  E  +   +I+ V D D   + D +GK  +
Sbjct: 75  DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYL 107

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 70.8 bits (174), Expect = 8e-15
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 5/101 (4%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFT 321
            ++ V +++A+ L   D+ G SDP+V +++     R++  KT      LNPI+NE F F 
Sbjct: 16  NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75

Query: 322 V--EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
           +  E      + + V D +  +   ++IG   ++ K     
Sbjct: 76  IPTEKLRETTIIITVMDKDK-LSRNDVIGKIYLSWKSGPGE 115

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 84.4 bits (209), Expect = 2e-19
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA---KTRVAHDTLNPVWNQTFDF 499
           +G L + +I   +L  +D  G +DPFV L LK    +    KT++   TLNP +N+ F +
Sbjct: 36  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95

Query: 500 VV--EDGQHEMLILDVYDHDTFGK-DKMGKCIM 529
            +   D   + L + V+D+D     D +G C +
Sbjct: 96  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL 128

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFT 321
           G L V +++   L   D  G SDPFV ++++P   +    KT      LNP +NE F + 
Sbjct: 37  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96

Query: 322 V--EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
           +   D + + L + V+ D     + + IG  Q+ +     G+    W + 
Sbjct: 97  IKHSDLAKKSLDISVW-DYDIGKSNDYIGGCQLGISAK--GERLKHWYEC 143

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 83.2 bits (206), Expect = 4e-19
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 443 RGVLSITVIAAENLPKVDL-IGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFD 498
              L + V     L   D    +++P+V   L   K    + KT +  DT+NP++++T  
Sbjct: 22  TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLR 81

Query: 499 FVV--EDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGK 553
           + +         L   V+ H  FG+   +G+  + +    ++ ++     + G  S +
Sbjct: 82  YEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAE 139

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 77.4 bits (191), Expect = 4e-17
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 264 GTLDVKLVQAKELTNKDL-IGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEF 320
            +L V + +  +L   D    +S+P+V  ++ P + R    KT    + +NP+++E   +
Sbjct: 23  QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82

Query: 321 TV--EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRD 378
            +     + + L   V+   G       +G A+I +   +  K  D  L L   +  + +
Sbjct: 83  EIPESLLAQRTLQFSVWHH-GRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESE 141

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 83.2 bits (206), Expect = 4e-19
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA---KTRVAHDTLNPVWNQTFDF 499
              L++ V+ A +LPK D+ G +DP+V + L  A  R    KT V   T N V+N+ F F
Sbjct: 29  TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 88

Query: 500 VV--EDGQHEMLILDVYDHDTFGK-DKMGKCIM 529
            +  E  +   +   V D +   + + +G+ ++
Sbjct: 89  DIPCESLEEISVEFLVLDSERGSRNEVIGRLVL 121

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFT 321
            TL V +++A+ L   D+ G SDP+V + +   + R+   KT       N ++NE F F 
Sbjct: 30  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89

Query: 322 V--EDASTQHLTVRVFD 336
           +  E      +   V D
Sbjct: 90  IPCESLEEISVEFLVLD 106

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 83.6 bits (207), Expect = 4e-19
 Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 6/93 (6%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA---KTRVAHDTLNPVWNQTFDF 499
            G L++ ++ A+NL K+D+ G +DP+V + L + G R    KT +  +TLNP +N++F F
Sbjct: 24  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83

Query: 500 VV--EDGQHEMLILDVYDHDTFGK-DKMGKCIM 529
            V  E  Q   +++ V D+D  GK D +GK  +
Sbjct: 84  EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 116

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFT 321
           G L V +++AK L   D+ G SDP+V I +     R+K  KT    N LNP +NE F F 
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 322 V--EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
           V  E      + V V D    +   + IG   +        
Sbjct: 85  VPFEQIQKVQVVVTVLDY-DKIGKNDAIGKVFVGYNSTGAE 124

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 83.2 bits (206), Expect = 4e-19
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL----KKAGNRAKTRVAHDTLNPVWNQTFD 498
               +I +I   NL  +         + + +    +      +TR    +   V+N+ F 
Sbjct: 42  NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFW 101

Query: 499 FVV--EDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQ 541
             +       + L +DV   D    ++ +G   ++L  V   GE  
Sbjct: 102 VSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERS 147

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 75.2 bits (185), Expect = 3e-16
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 9/114 (7%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD----RMKTSKTINNELNPIWNEHFE 319
               + ++Q   L+           + + V P  +      +T + ++     ++NE F 
Sbjct: 43  KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRT-RPLDASDTLVFNEVFW 101

Query: 320 FTV--EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEP-GKVKDVWLKLV 370
            ++       + L V V          E +G AQI+L E+   G+    W  L+
Sbjct: 102 VSMSYPALHQKTLRVDVC-TTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDF 499
           R  L + V A  NL        +DP+V + L   K+   R KT V+  TLNPV++Q+FDF
Sbjct: 23  RNKLIVVVHACRNLIAFS-EDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81

Query: 500 VV--EDGQHEMLILDVYDHDTFGKDK---MGKCIMTLTRVMMEGEI 540
            V   + Q   L + V +   F       +GK ++ L    +    
Sbjct: 82  SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGW 127

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 74.7 bits (184), Expect = 3e-16
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFT 321
             L V +   + L        SDP+V +++ P + R    KT      LNP++++ F+F+
Sbjct: 24  NKLIVVVHACRNLIAFS-EDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS 82

Query: 322 V--EDASTQHLTVRVFD-DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVK 374
           V   +   + L V V +          ++G   +AL   E  K    W  L +D  
Sbjct: 83  VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 82.1 bits (203), Expect = 2e-18
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 264 GTLDVKLVQAKELTNKDL-IGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEF 320
           G L+V++++A+ LT K        P+V +++      +   KT      L+P++ +   F
Sbjct: 30  GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89

Query: 321 TVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
                  + L V V+ D G M     +G+AQI L+EL+   +   W KL
Sbjct: 90  DESPQG-KVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 79.4 bits (196), Expect = 1e-17
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 443 RGVLSITVIAAENLPKVDL-IGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFD 498
           +G L + VI A +L +         P+V + L        + KTR+A  TL+P++ Q+  
Sbjct: 29  KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88

Query: 499 FVVEDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEI 540
           F        + ++   D+        MG   + L  + +   +
Sbjct: 89  FDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMV 131

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 80.4 bits (198), Expect = 3e-18
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 12/131 (9%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVED 503
            +L + V  A+     +   K + +V L++    N   T +A     P W Q F F +  
Sbjct: 5   SLLCVGVKKAKFDGAQE---KFNTYVTLKV---QNVKSTTIAVRGSQPSWEQDFMFEINR 58

Query: 504 GQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGE--IQDSFHIDG---TKSGKLFLNL 558
                L ++V++        +G   + L  +    E    +   +D        ++    
Sbjct: 59  LDLG-LTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTK 117

Query: 559 KWTPQLVLRDS 569
             T   +L D+
Sbjct: 118 DPTFHRILLDA 128

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 16/119 (13%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
             L V + +AK    ++   K + +V + V+ ++      +       P W + F F + 
Sbjct: 5   SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRG----SQPSWEQDFMFEIN 57

Query: 324 DASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL----EPGKVKDVWLKLVKDVKVQRD 378
                 LTV V++    ++   ++G   I L+ +    E G  +  WL L     +   
Sbjct: 58  RLDLG-LTVEVWNKG--LIWDTMVGTVWIPLRTIRQSNEEGPGE--WLTLDSQAIMADS 111

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 80.5 bits (199), Expect = 3e-18
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 10/105 (9%)

Query: 443 RGVLSITVIAAENLPKVDLIGK-ADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFD 498
           R    + +  A  LP +D     +DP++ + +   KK  ++ KTRV   TL+P +++TF 
Sbjct: 21  RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK--HKVKTRVLRKTLDPAFDETFT 78

Query: 499 FVV---EDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGE 539
           F        Q   L   +   D F +D  +G+ ++ L+ + +   
Sbjct: 79  FYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEG 123

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 73.1 bits (180), Expect = 9e-16
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 264 GTLDVKLVQAKELTNKDLIGK-SDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEF-- 320
               V + +A+ L   D     SDP++ + + P +     ++ +   L+P ++E F F  
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 321 -TVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVK-DVWLKLVK 371
                     L   +          +IIG   I L  +E  + K  +  +++ 
Sbjct: 82  IPYTQIQELALHFTIL-SFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 79.6 bits (197), Expect = 5e-18
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDF 499
            G L I V+  ++L   D     +P+V   L       ++ KT+++  T NP +N+   +
Sbjct: 19  NGTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY 77

Query: 500 VV---EDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKS 551
                E  +   L L V   ++  +   +G   + L    +  E    + +     
Sbjct: 78  SGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATY 133

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSK----TINNELNPIWNEHFE 319
           GTL + ++  K+L  +D     +P+V  ++ P  D  KTSK          NP +NE   
Sbjct: 20  GTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLP--DTHKTSKRKTKISRKTRNPTFNEMLV 76

Query: 320 FTV---EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
           ++    E    + L + V      +     +G   + LK+    K    W +L
Sbjct: 77  YSGYSKETLRQRELQLSVL-SAESLRENFFLGGITLPLKDFNLSKETVKWYQL 128

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 78.9 bits (195), Expect = 9e-18
 Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 7/109 (6%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMK-TSKTINNELNPIWNEHFEFTV 322
             L V  ++A      +  G  D +V   V      ++  +     +L+  W E     +
Sbjct: 26  AELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 323 --EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
             E+  T  LT+ +           + G  ++ L           W +L
Sbjct: 83  AEEELPTATLTLTLR-TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 78.6 bits (194), Expect = 1e-17
 Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 9/128 (7%)

Query: 419 SETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQL--KKA 476
           S  S     +  K+      D   +  L +T + A      +  G  D +V   +  +  
Sbjct: 2   SSGSSGSWNQAPKLHYCLDYDCQ-KAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTG 57

Query: 477 GNRAKTRVAHDTLNPVWNQTFDFVV--EDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTR 533
              A+T +    L+  W +     +  E+     L L +   D F +    G+  + L  
Sbjct: 58  SVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDG 117

Query: 534 VMMEGEIQ 541
             +     
Sbjct: 118 TSVPLGAA 125

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 79.0 bits (195), Expect = 1e-17
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 443 RGVLSITVIAAENLP-------KVDLIGKADPFVVLQLK-KAGNRAKTRVAHDTLNPVWN 494
              L++ VI A +LP           +  ++P+V + L     N  +T V   T  PV+ 
Sbjct: 25  HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFE 84

Query: 495 QTFDFVV--EDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQDSFHI--DGT 549
           + + F +   + Q   L+L V D D F +   +GK  + L  V +         +   G 
Sbjct: 85  ERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGP 144

Query: 550 KSG 552
            SG
Sbjct: 145 SSG 147

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 72.5 bits (178), Expect = 2e-15
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 264 GTLDVKLVQAKEL-------TNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNE 316
             L V++++A++L        ++  +  S+P+V I + P +   K +        P++ E
Sbjct: 26  NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85

Query: 317 HFEFTV--EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
            + F +   +A  + L + V  D        +IG   + L E++  K    W  L
Sbjct: 86  RYTFEIPFLEAQRRTLLLTVV-DFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 78.2 bits (193), Expect = 3e-17
 Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDF 499
             VL + +I  + L      G  DP+V + L          KT+   D  +P +++ F F
Sbjct: 26  DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFF 84

Query: 500 VVEDGQ-HEMLILDVYDHDTFGKDK--MGKCIMTLTRVM 535
            V++    + L++ V++  +  +    +G     +  ++
Sbjct: 85  PVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLL 123

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFT 321
             L + +++ K L +K   G  DP+V I + P   R++  KT  + +  +P ++EHF F 
Sbjct: 27  RVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP 85

Query: 322 V-EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELE-PGKVKDVWLKL 369
           V E+   + L V V++         +IG     +K L  P K    W  L
Sbjct: 86  VQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYL 135

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 83.4 bits (205), Expect = 4e-17
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 447 SITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDF-VVEDGQ 505
            ++   AE+L         D ++ +     G   +T V  +  NP W    DF  V    
Sbjct: 397 VVSNFRAEHLWGDYTT-ATDAYLKVFF--GGQEFRTGVVWNNNNPRWTDKMDFENVLLST 453

Query: 506 HEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLK 559
              L + V+D D     D +G C  +       G  + +  +     G++  +  
Sbjct: 454 GGPLRVQVWDADYGWDDDLLGSCDRSPHS----GFHEVTCEL---NHGRVKFSYH 501

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 61.1 bits (147), Expect = 6e-10
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 28/145 (19%)

Query: 268 VKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEF-TVEDAS 326
           V   +A+ L        +D ++ +F      +   +  + N  NP W +  +F  V  ++
Sbjct: 398 VSNFRAEHLWGDYTT-ATDAYLKVF---FGGQEFRTGVVWNNNNPRWTDKMDFENVLLST 453

Query: 327 TQHLTVRVFD-DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQV 385
              L V+V+D D G     +++G           G   +V  +L           N G+V
Sbjct: 454 GGPLRVQVWDADYG--WDDDLLGSCDR---SPHSG-FHEVTCEL-----------NHGRV 496

Query: 386 HLEL-LYCPFGTESSLKNPFNSDYS 409
                  C       L      +Y+
Sbjct: 497 KFSYHAKC----LPHLTGGTCLEYA 517

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 66.9 bits (163), Expect = 2e-13
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPV-WNQTFDFVVEDG 504
           L + +     L      G+AD    +  +  G    +RV  +  +   +++TF + V   
Sbjct: 23  LIVHLKTVSELR-----GRADRIAKVTFR--GQSFYSRVLENCEDVADFDETFRWPVASS 75

Query: 505 --QHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQDSFH-IDGTKS---GKLFLN 557
             ++E+L + ++++     +K +G   M L +V+ E  ++ S   ID   +     L + 
Sbjct: 76  IDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSME 135

Query: 558 LKWTP 562
           +++  
Sbjct: 136 VRYQA 140

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 58.1 bits (140), Expect = 2e-10
 Identities = 27/148 (18%), Positives = 59/148 (39%), Gaps = 25/148 (16%)

Query: 255 YSDLELKPCGT---LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELN 311
           +    L P G+   L V L    EL      G++D    +     R +   S+ + N  +
Sbjct: 9   HHSSGLVPRGSHMALIVHLKTVSELR-----GRADRIAKVT---FRGQSFYSRVLENCED 60

Query: 312 PI-WNEHFEFTVEDA--STQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLK 368
              ++E F + V  +    + L +++F +   + + ++IG  ++ L+++      +V   
Sbjct: 61  VADFDETFRWPVASSIDRNEVLEIQIF-NYSKVFSNKLIGTFRMVLQKVVEENRVEVSDT 119

Query: 369 LVKDVKVQRDTKNR---GQVHLELLYCP 393
           L+       D  N      + +E+ Y  
Sbjct: 120 LI-------DDNNAIIKTSLSMEVRYQA 140

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 60.8 bits (147), Expect = 4e-11
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVED 503
            +L + V  A+     +   K + +V L++    N   T +A     P W Q F F +  
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKV---QNVESTTIAVRGSQPSWEQDFMFEINR 67

Query: 504 GQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGE 539
                L ++V++        +G   + L  +    E
Sbjct: 68  LDLG-LTVEVWNKGLIWDTMVGTVWIPLRTIRQSNE 102

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 48.9 bits (116), Expect = 5e-07
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 16/119 (13%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
             L V + +AK    ++   K + +V + V      ++++        P W + F F + 
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKV----QNVESTTIAVRGSQPSWEQDFMFEIN 66

Query: 324 DASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL----EPGKVKDVWLKLVKDVKVQRD 378
                 LTV V++    ++   ++G   I L+ +    E G  +  WL L     +   
Sbjct: 67  RLDL-GLTVEVWNKG--LIWDTMVGTVWIPLRTIRQSNEEGPGE--WLTLDSQAIMADS 120

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138

 Score = 51.2 bits (122), Expect = 5e-08
 Identities = 13/107 (12%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 266 LDVKLVQAKELTNKDLIGKS-DPFVVIFV--RPLRDRMKTSKTINNELNPIWNEHFEFTV 322
           L + L      + +   G++ +P+  + V      +  +        + P W+  F+  +
Sbjct: 12  LRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHI 71

Query: 323 EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
                  + + V      +++   + +  +A +  +     ++WL+L
Sbjct: 72  NKGR--VMQIIVKGKNVDLISETTVELYSLAERCRKNNGKTEIWLEL 116

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 18/124 (14%), Positives = 48/124 (38%), Gaps = 12/124 (9%)

Query: 444 GVLSITVIAAENLPKVDLIGKA-DPFVVLQLKKA--GNRAKTRVA-HDTLNPVWNQTFDF 499
             L I +   +        G+A +P+  + +K+       +  +    T+ P W+ TFD 
Sbjct: 10  PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDA 69

Query: 500 VVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVM---MEGEIQDSFHIDGTKSGKLFL 556
            +  G+   + + V   +    D + +  + L  +     +   +    ++    G++ +
Sbjct: 70  HINKGRV--MQIIVKGKNV---DLISETTVELYSLAERCRKNNGKTEIWLELKPQGRMLM 124

Query: 557 NLKW 560
           N ++
Sbjct: 125 NARY 128

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 54.6 bits (130), Expect = 5e-08
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 8/114 (7%)

Query: 256 SDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVI-FVRPLRDRMKTSKTINNELNPIW 314
            D   +    L + +++A+EL  K        +  +     L  R  +     +     W
Sbjct: 3   KDNSRRVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFW 57

Query: 315 NEHFEFTVEDASTQHLTVRVFDDEGP--MLAPEIIGIAQIALKELEPGKVKDVW 366
            EHFEF    A          D +          +G+  + +  L      + W
Sbjct: 58  GEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQW 111

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 47.3 bits (111), Expect = 1e-05
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 9/80 (11%)

Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTL---NPVWNQTFDFVV 501
           VL + +I A  LP          +  L L      A+T     +       W + F+F  
Sbjct: 12  VLKLWIIEARELPPKK-----RYYCELCLDDM-LYARTTSKPRSASGDTVFWGEHFEFNN 65

Query: 502 EDGQHEMLILDVYDHDTFGK 521
                 + +    D D   K
Sbjct: 66  LPAVRALRLHLYRDSDKKRK 85

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 53.9 bits (129), Expect = 9e-08
 Identities = 40/245 (16%), Positives = 82/245 (33%), Gaps = 13/245 (5%)

Query: 154 NIVLDIRTRVGVGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKV 213
           N  L +   V            F+      FK           +     +    +    +
Sbjct: 274 NDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTDPSSDEPVFHI 333

Query: 214 VGGDIS-SIPGISDAIEETIIDAIEDSITWPVRQIIPILPGDYSDL--ELKPCGTLDVKL 270
              D   ++   +       +  I+ +    +          Y     +    G L V +
Sbjct: 334 SHIDRVYTLRTDNINERTAWVQKIKAASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHV 393

Query: 271 VQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHL 330
           ++A EL      GKS+P+  I    +  +  T++TI + LNP WN + +F ++D     L
Sbjct: 394 IEATELKACKPNGKSNPYCEI---SMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVL 450

Query: 331 TVRVFDDEGPMLAPEIIGIAQIALKEL-EPGKVKDVWLKLVKDVKVQRDTKNRGQVHLEL 389
            + +F D       + +G  +I + ++    + K    + +   +V       G+V +  
Sbjct: 451 CLTLF-DRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVP-----TGEVWVRF 504

Query: 390 LYCPF 394
               F
Sbjct: 505 DLQLF 509

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 2/108 (1%)

Query: 415 KSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLK 474
           K+   +    E  +  K    +       G L + VI A  L      GK++P+  + + 
Sbjct: 358 KAASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMG 417

Query: 475 KAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKD 522
                  TR   DTLNP WN    F ++D   ++L L ++D D F  D
Sbjct: 418 --SQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPD 463

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 434 TQKKSDVIVRGVLSITVIAAENLPKVDLIG--KADPFVVLQLKKAGN---RAKTRVAHD- 487
              +        L + +I+ + LPKV+       DP V++++   G      +T V  + 
Sbjct: 487 ALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNN 546

Query: 488 TLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKM 524
             NP W+  F+F V      ++   V D+D+  K+  
Sbjct: 547 GFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDF 583

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 261 KPCGTLDVKLVQAKELTNKDLIGKS--DPFVVIFVRPLRD---RMKTSKTINNELNPIWN 315
                L V+++  ++L   +    S  DP V++ +  +       +T+   NN  NP W+
Sbjct: 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 553

Query: 316 EHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
             FEF V       +   V D +      + IG + I    L+ G
Sbjct: 554 MEFEFEVTVPDLALVRFMVEDYDSSS-KNDFIGQSTIPWNSLKQG 597

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A Length = 126

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 14/106 (13%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFV--RPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
           L +     +  + +     + PF  + +      +R KT       + P W   F+  + 
Sbjct: 8   LRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY 67

Query: 324 DASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
           +     + +         ++   +G++ +A +  +     + WL L
Sbjct: 68  EGRVIQIVL--MRAAEEPVSEVTVGVSVLAERCKKNNGKAEFWLDL 111

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 3e-05
 Identities = 61/461 (13%), Positives = 144/461 (31%), Gaps = 142/461 (30%)

Query: 32  RAELANIVAAFSRMTVQDSRKLIPPEFYPPWVVFQQRQKL--NWLNYQLDKLWPFINEAA 89
           + E+ +I+ +     V  + +L        W +  +++++   ++   L   + F+    
Sbjct: 48  KEEIDHIIMSKDA--VSGTLRLF-------WTLLSKQEEMVQKFVEEVLRINYKFL---- 94

Query: 90  SELIRSNVEPILEQYR-PSILASLSFSKLT-LGTVAPQFTGVAIVESESGEEGITMELEM 147
                  + PI  + R PS++  +   +   L      F    +   +   +     LE+
Sbjct: 95  -------MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 148 QWDGNPNIVLDIRTRVGVG------LPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAY-S 200
           +     N+++D     GV       + + V           +   +  +   F  + + +
Sbjct: 148 R--PAKNVLID-----GVLGSGKTWVALDV----------CLSYKVQCKMD-FK-IFWLN 188

Query: 201 LREKKDLDFTLKV-------VGGDISSIPGISDAIE---ETIIDAIEDSITWP--VRQII 248
           L+     +  L++       +  + +S    S  I+    +I   +   +        ++
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 249 PILPGDYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINN 308
            +L     +++       + K   A  L+ K L+      V        D +  + T + 
Sbjct: 249 -VL--L--NVQ-------NAKAWNAFNLSCKILLTTRFKQVT-------DFLSAATTTHI 289

Query: 309 ELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIG-----IAQIA---------- 353
            L     +H   T+     + L ++  D     L  E++      ++ IA          
Sbjct: 290 SL-----DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 354 ------------------LKELEPGKVKDVWLKLV---KDVKVQRDTKNRGQVHLELLYC 392
                             L  LEP + + ++ +L        +           L L++ 
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-------LSLIWF 397

Query: 393 PFGTE-----------SSL--KNPFNSDYSLTTLEKSLKSE 420
                            SL  K P  S  S+ ++   LK +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	570
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.86
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.85
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.84
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.84
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.84
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.84
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.84
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.83
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.82
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.82
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.82
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.82
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.8
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.79
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.79
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.79
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.79
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.79
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.79
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.78
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.78
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.78
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.78
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.78
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.78
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.78
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.77
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.77
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.77
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.77
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.77
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.77
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.77
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.77
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.77
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.76
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.76
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.76
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.76
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.75
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.75
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.74
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.74
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.74
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.74
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.74
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.74
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.74
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.74
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.74
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.74
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.74
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.74
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.74
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.74
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.73
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.73
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.73
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.73
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.72
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.72
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.72
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.72
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.72
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.71
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.7
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.69
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.67
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.65
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.64
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.64
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.64
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.62
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.62
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.59
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.57
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.56
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.53
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.53
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.48
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.48
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.47
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.43
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.37
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.26
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.21
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.13
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.12
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.12
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.08
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.06
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.03
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.02
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.01
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.92
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.91
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	92.56
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	92.24
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	89.39
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	86.7
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	86.32
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	80.68

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=6e-35  Score=291.20  Aligned_cols=239  Identities=30%  Similarity=0.507  Sum_probs=203.1

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEeC
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFDD  337 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d~  337 (570)
                      ....|.|.|+|++|++|+..+..|.+||||++++.+...+.++|+++++++||+|||+|.|.+...  ..+.|.|+|||+
T Consensus        15 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~   94 (284)
T 2r83_A           15 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDF   94 (284)
T ss_dssp             ETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEEC
T ss_pred             ECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEEC
Confidence            457899999999999999999889999999999986656788999999999999999999998643  457899999999


Q ss_pred             CCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEeccCCCCCCCCCCCCccchhhhhhh
Q 008305          338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSL  417 (570)
Q Consensus       338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~  417 (570)
                      +.. ++|++||++.+++.++..+...+.|++|.+...  ......|+|.+.+.|.|                        
T Consensus        95 d~~-~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~--~~~~~~G~i~l~l~~~p------------------------  147 (284)
T 2r83_A           95 DRF-SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK--EEQEKLGDICFSLRYVP------------------------  147 (284)
T ss_dssp             CSS-SCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSS--CCCCCCCEEEEEEEEET------------------------
T ss_pred             CCC-CCCceeEEEEEcchhcccCCcceeEEEeecccc--ccccccccEEEEEEecC------------------------
Confidence            998 889999999999999988888899999975421  12346799999999863                        


Q ss_pred             cccCchhhhhhccccccccCCCcccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeee
Q 008305          418 KSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWN  494 (570)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~  494 (570)
                                              ..+.|.|+|++|+||+..+..|.+||||++++....   .+++|++++++.||.||
T Consensus       148 ------------------------~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wn  203 (284)
T 2r83_A          148 ------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN  203 (284)
T ss_dssp             ------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEE
T ss_pred             ------------------------cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEc
Confidence                                    247899999999999999999999999999985322   46899999999999999


Q ss_pred             eEEEEEeecCC--CcEEEEEEEECCCCCC-ceeEEEEEeccccc------------cCceEEEEEEecCC
Q 008305          495 QTFDFVVEDGQ--HEMLILDVYDHDTFGK-DKMGKCIMTLTRVM------------MEGEIQDSFHIDGT  549 (570)
Q Consensus       495 e~f~f~v~~~~--~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~------------~~~~~~~w~~L~~~  549 (570)
                      |+|.|.+....  ...|.|+|||++..++ ++||++.+++..+.            .+....+||+|.+.
T Consensus       204 e~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          204 ESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  273 (284)
T ss_dssp             EEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred             eeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence            99999986432  4579999999998866 79999999997632            22356899999764

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=4.1e-34  Score=286.47  Aligned_cols=239  Identities=29%  Similarity=0.469  Sum_probs=196.6

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEe
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFD  336 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d  336 (570)
                      +....|.|.|+|++|++|+.+|..|.+||||++++.+.+.+.++|+++++++||+|||+|.|.+...  ....|.|+|||
T Consensus        15 y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d   94 (296)
T 1dqv_A           15 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD   94 (296)
T ss_dssp             CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred             EeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEE
Confidence            3457899999999999999999889999999999965556789999999999999999999998643  24589999999


Q ss_pred             CCCCCCCCceEEEEEEE-ccccCC-CeeeEEEEEeeccccccCCCcceeEEEEEEEEEeccCCCCCCCCCCCCccchhhh
Q 008305          337 DEGPMLAPEIIGIAQIA-LKELEP-GKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLE  414 (570)
Q Consensus       337 ~d~~~~~d~~lG~~~i~-l~~l~~-~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~  414 (570)
                      +|.+ ++|++||++.++ +.++.. ......|++|....   ......|+|.+.+.|.|                     
T Consensus        95 ~d~~-~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~---~~~~~~G~i~vsl~y~~---------------------  149 (296)
T 1dqv_A           95 FDRF-SRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG---SEKADLGELNFSLCYLP---------------------  149 (296)
T ss_dssp             CCSS-SCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS---SCCSCCCEEEEEEEEET---------------------
T ss_pred             cCCC-CCCceEEEEEeccccccccCCccceeeecccccc---ccccccceEEEEEEecc---------------------
Confidence            9998 899999999996 444433 33456799986432   23456799999999863                     


Q ss_pred             hhhcccCchhhhhhccccccccCCCcccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCC
Q 008305          415 KSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNP  491 (570)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP  491 (570)
                                                 ..|.|.|+|++|+||+..+..|.+||||++++...   ..++||++++++.||
T Consensus       150 ---------------------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP  202 (296)
T 1dqv_A          150 ---------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNP  202 (296)
T ss_dssp             ---------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSC
T ss_pred             ---------------------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCC
Confidence                                       24899999999999999999999999999998521   357899999999999


Q ss_pred             eeeeEEEEEeecC--CCcEEEEEEEECCCCCC-ceeEEEEEecccccc-------------CceEEEEEEecCC
Q 008305          492 VWNQTFDFVVEDG--QHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMM-------------EGEIQDSFHIDGT  549 (570)
Q Consensus       492 ~w~e~f~f~v~~~--~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~-------------~~~~~~w~~L~~~  549 (570)
                      .|||.|.|.+...  ....|.|+|||++..++ ++||++.+++.++..             +....+|++|.+.
T Consensus       203 ~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~  276 (296)
T 1dqv_A          203 TYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE  276 (296)
T ss_dssp             EEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred             eECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence            9999999998643  24579999999999876 699999999987643             2245678888654

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.86  E-value=4.8e-21  Score=168.47  Aligned_cols=126  Identities=31%  Similarity=0.551  Sum_probs=111.7

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeC-CCCCCeeecEEEEEEecCCCCeEEEEEEeCC
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTIN-NELNPIWNEHFEFTVEDASTQHLTVRVFDDE  338 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d  338 (570)
                      ..+.|.|.|+|++|++|+..+..|.+||||++++.   .+.++|++++ ++.||+|||+|.|.+.+ ..+.|.|+|||++
T Consensus         6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~   81 (136)
T 1wfj_A            6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKD   81 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS---SCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSS
T ss_pred             CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEEC---CccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECC
Confidence            35899999999999999999988999999999997   4578999998 89999999999999986 5579999999999


Q ss_pred             CCCCCCceEEEEEEEcccc-CCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEeccC
Q 008305          339 GPMLAPEIIGIAQIALKEL-EPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGT  396 (570)
Q Consensus       339 ~~~~~d~~lG~~~i~l~~l-~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~  396 (570)
                      .. ++|++||++.+++.++ ..+.....|++|.      ..++..|+|+++++|.|...
T Consensus        82 ~~-~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~------~~~~~~G~i~l~l~~~p~~~  133 (136)
T 1wfj_A           82 VG-TEDDAVGEATIPLEPVFVEGSIPPTAYNVV------KDEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             SC-TTTCCSEEEEEESHHHHHHSEEEEEEEEEE------ETTEEEEEEEEEEEEEECCS
T ss_pred             CC-CCCceEEEEEEEHHHhccCCCCCcEEEEee------cCCccCEEEEEEEEEEeCCC
Confidence            98 8899999999999999 4566678999996      24578999999999998644

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1.5e-20  Score=166.22  Aligned_cols=128  Identities=30%  Similarity=0.489  Sum_probs=109.6

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC---CCCeEEEEEEeC
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA---STQHLTVRVFDD  337 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~---~~~~L~~~v~d~  337 (570)
                      ...|.|.|+|++|++|+..+. |.+||||++++.   .++++|+++++++||+|||+|.|.+..+   ....|.|+|||+
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~   79 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFK---DEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF   79 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECS---SCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC---CEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence            357899999999999999998 999999999997   5679999999999999999999999653   357899999999


Q ss_pred             CCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305          338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPF  394 (570)
Q Consensus       338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  394 (570)
                      +.. ++|++||++.+++.++..+...+.|+++.+-.. .......|+|+++++|.|.
T Consensus        80 d~~-~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~-~~~~~~~G~l~l~~~~~p~  134 (140)
T 2dmh_A           80 ETI-GQNKLIGTATVALKDLTGDQSRSLPYKLISLLN-EKGQDTGATIDLVIGYDPP  134 (140)
T ss_dssp             TCS-SSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEEC-TTCCEEEEEEEEEEEECCC
T ss_pred             CCC-CCCceEEEEEEEHHHhccCCCceeEEeeeeccC-CCCCCCCCEEEEEEEEECC
Confidence            998 899999999999999988888889998332111 1233567999999999874

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.84  E-value=1.8e-20  Score=168.23  Aligned_cols=129  Identities=25%  Similarity=0.428  Sum_probs=104.3

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC---ceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEe
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD---RMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFD  336 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d  336 (570)
                      ....|.|+|+|++|++|+..+..|.+||||++++.+...   +.++|+++++++||+|||+|.|.+... ...|.|+|||
T Consensus        16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d   94 (153)
T 3b7y_A           16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFD   94 (153)
T ss_dssp             CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEE
T ss_pred             CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEE
Confidence            357899999999999999999889999999999985432   578999999999999999999999864 4689999999


Q ss_pred             CCCCCCCCceEEEEEEEccccCCCeee------EEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305          337 DEGPMLAPEIIGIAQIALKELEPGKVK------DVWLKLVKDVKVQRDTKNRGQVHLELLYCP  393 (570)
Q Consensus       337 ~d~~~~~d~~lG~~~i~l~~l~~~~~~------~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  393 (570)
                      ++.. ++|++||++.+++.++..+...      ..|++|.+..   ...+..|+|+++++|.|
T Consensus        95 ~d~~-~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           95 ENRL-TRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS---HKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             CCSS-SCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS---TTCCCCSEEEEEEEECC
T ss_pred             CCCC-cCCCeeEEEEEEHHHcccCCCccccccccccccccccc---CCCCcceEEEEEEEEeC
Confidence            9998 8999999999999999765432      5899996542   23467899999999975

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=1.3e-20  Score=163.40  Aligned_cols=120  Identities=24%  Similarity=0.482  Sum_probs=105.0

Q ss_pred             ceEEEEEEEEecCCCCC---CCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCC
Q 008305          263 CGTLDVKLVQAKELTNK---DLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEG  339 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~---~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~  339 (570)
                      .|.|.|+|++|++|+..   +..|.+||||++++++.+.+.++|+++++++||+|||+|.|.+.......|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            58999999999999984   666899999999998544578999999999999999999999976677899999999998


Q ss_pred             CCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          340 PMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       340 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                      .  +|++||++.++++++..+.....|++|.        ....|.|+++++..
T Consensus        82 ~--~~~~iG~~~i~l~~l~~~~~~~~~~~L~--------~~~~g~i~~~le~~  124 (126)
T 1rlw_A           82 V--MDETLGTATFTVSSMKVGEKKEVPFIFN--------QVTEMVLEMSLEVA  124 (126)
T ss_dssp             S--CCEEEEEEEEEGGGSCTTCEEEEEEEET--------TTEEEEEEEEEECC
T ss_pred             C--CCceeEEEEEEHHHccCCCcEEEEEEcC--------CCceEEEEEEEEeC
Confidence            7  5999999999999999998899999994        24678888877653

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.84  E-value=1e-20  Score=168.89  Aligned_cols=117  Identities=23%  Similarity=0.328  Sum_probs=101.6

Q ss_pred             CCceEEEEEEEEecCCCCCCC----------CCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeE
Q 008305          261 KPCGTLDVKLVQAKELTNKDL----------IGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHL  330 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~----------~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L  330 (570)
                      ...|.|+|+|++|++|+++|.          .|.+||||+++++  +.+..+|+++++|+||+|||+|.|.+.+  .+.|
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~--~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L  101 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD--QVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHL  101 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEEC--CEeeEEeeecCCCCCCccCcEEEEEcCC--CCEE
Confidence            578999999999999998873          2679999999996  2345799999999999999999999975  3589


Q ss_pred             EEEEEeCCCCCCCCceEEEEEEEccccCCC----eeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          331 TVRVFDDEGPMLAPEIIGIAQIALKELEPG----KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       331 ~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                      .|+|||++.+ ++|++||++.|+++++..+    ...+.|++|.          ..|+|+++++|.
T Consensus       102 ~~~V~D~d~~-~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~----------~~G~i~l~l~~~  156 (157)
T 2fk9_A          102 ELAVFHETPL-GYDHFVANCTLQFQELLRTTGASDTFEGWVDLE----------PEGKVFVVITLT  156 (157)
T ss_dssp             EEEEEECCSS-SSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB----------SSCEEEEEEEEC
T ss_pred             EEEEEECCCC-CCCCEEEEEEEEHHHhhcccCCCCcccEEEECC----------CCcEEEEEEEEE
Confidence            9999999998 8899999999999999754    6689999993          279999999873

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=2.5e-20  Score=161.53  Aligned_cols=120  Identities=23%  Similarity=0.464  Sum_probs=105.9

Q ss_pred             ceEEEEEEEEeecCCCC---CCCCCCCcEEEEEEeCC-CceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKV---DLIGKADPFVVLQLKKA-GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~---~~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~  518 (570)
                      .|.|.|+|++|+||+..   +..|.+||||++++++. ..++||++++++.||.|||+|.|.+.......|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            58999999999999984   55688999999999642 468899999999999999999999976667899999999998


Q ss_pred             CCCceeEEEEEeccccccCceEEEEEEecCCCCeEEEEEEEEEe
Q 008305          519 FGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWTP  562 (570)
Q Consensus       519 ~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~p  562 (570)
                      .++++||++.++|.++..+.....|++|.+.+.|+|+++++..|
T Consensus        82 ~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~~~  125 (126)
T 1rlw_A           82 VMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVAS  125 (126)
T ss_dssp             SCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCC
T ss_pred             CCCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEeCC
Confidence            87789999999999998888889999999977888888876554

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=1.5e-20  Score=164.50  Aligned_cols=125  Identities=30%  Similarity=0.533  Sum_probs=109.6

Q ss_pred             cccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeC
Q 008305          258 LELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDD  337 (570)
Q Consensus       258 ~~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~  337 (570)
                      .+..+.|.|.|+|++|++|+..+..|.+||||+++++   .+.++|+++++++||+|||+|.|.+.+. .+.|.|+|||+
T Consensus         7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~   82 (133)
T 2ep6_A            7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELG---NDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDE   82 (133)
T ss_dssp             CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET---TEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEE
T ss_pred             cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEEC---CEEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEEC
Confidence            3457899999999999999999988999999999997   5678999999999999999999999865 46899999999


Q ss_pred             CCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                      +.. ++|++||++.+++.++..+.  ..|++|....   ......|+|+++++|.
T Consensus        83 d~~-~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~---~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           83 DGD-KPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKD---LEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             ETT-EEEEECCBCEEEGGGCCSSC--CEECCCBCSC---TTSCCSSEEEEEEEEE
T ss_pred             CCC-CCCCeeEEEEEEHHHccCCC--ceEEEeecCC---CCCccceEEEEEEEEE
Confidence            998 88999999999999997654  5899997542   2346789999999986

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.83  E-value=1.1e-19  Score=167.24  Aligned_cols=129  Identities=25%  Similarity=0.429  Sum_probs=102.6

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC---ceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeC
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD---RMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDD  337 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~  337 (570)
                      ...|.|+|+|++|++|+..+..|.+||||++++.....   +.++|+++++++||+|||+|.|.+... .+.|.|+|||+
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d~   83 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFDE   83 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEEC
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEEC
Confidence            46899999999999999999889999999999985433   568999999999999999999999853 46899999999


Q ss_pred             CCCCCCCceEEEEEEEccccCCCeee-E-----EEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305          338 EGPMLAPEIIGIAQIALKELEPGKVK-D-----VWLKLVKDVKVQRDTKNRGQVHLELLYCPF  394 (570)
Q Consensus       338 d~~~~~d~~lG~~~i~l~~l~~~~~~-~-----~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  394 (570)
                      +.. ++|++||++.++|.++..+... +     .|++|....   ..++..|+|++++.|.|.
T Consensus        84 d~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           84 NRL-TRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS---HKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             C-----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS---TTCCCCSEEEEEEEECC-
T ss_pred             CCC-CCCcEEEEEEEEHHHccccCCcccccccccEEEccccC---CCCccCEEEEEEEEEEeC
Confidence            998 8999999999999999865433 2     799997542   244578999999999986

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.82  E-value=5.4e-20  Score=161.65  Aligned_cols=117  Identities=21%  Similarity=0.353  Sum_probs=100.8

Q ss_pred             CceEEEEEEEEecCCCCCCCCCC-----------CCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeE
Q 008305          262 PCGTLDVKLVQAKELTNKDLIGK-----------SDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHL  330 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~~g~-----------~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L  330 (570)
                      ..|.|+|+|++|++|++.|..+.           +||||+++++  +....+|+++.+|+||+|||+|.|.+.+.  +.|
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~--~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L   79 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD--DSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKI   79 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEEC--CeEeeeeeEECCCcCCccCCEEEEEecCC--CEE
Confidence            46999999999999998875444           9999999995  23457899999999999999999999765  789


Q ss_pred             EEEEEeCCCCCCCCceEEEEEEEccccCCC--eeeEEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305          331 TVRVFDDEGPMLAPEIIGIAQIALKELEPG--KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCP  393 (570)
Q Consensus       331 ~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  393 (570)
                      .|+|||++.. ++|++||++.+++.++..+  ...+.|++|.          ..|+|+++++|.+
T Consensus        80 ~~~V~d~d~~-~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~i~l~l~~~~  133 (136)
T 1gmi_A           80 ELAVFHDAPI-GYDDFVANCTIQFEELLQNGSRHFEDWIDLE----------PEGKVYVIIDLSG  133 (136)
T ss_dssp             EEEEEECCSS-SSCEEEEEEEEEHHHHTSTTCSEEEEEEECB----------SSCEEEEEEEEEE
T ss_pred             EEEEEeCCCC-CCCCEEEEEEEEHHHhcccCCCCccEEEEcC----------CCeEEEEEEEEEe
Confidence            9999999998 8899999999999999864  3458999883          3799999999975

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.82  E-value=2.6e-19  Score=159.74  Aligned_cols=122  Identities=30%  Similarity=0.546  Sum_probs=105.6

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC-
Q 008305          262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP-  340 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~-  340 (570)
                      ..|.|+|+|++|++|+..+..|.+||||+++++   .+.++|+++.+++||.|||+|.|.+..+. +.|.|+|||++.. 
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~~~~-~~l~~~v~d~d~~~   90 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVG---KTKKRTKTIYGNLNPVWEENFHFECHNSS-DRIKVRVLDEDDDI   90 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEET---TEEEECCCCCSCSSCEEEEEEEEEECSTT-CEEEEEEEECCCSH
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC---CEEEECCccCCCCCCCcccEEEEEecCCC-CEEEEEEEECCCCc
Confidence            579999999999999999988999999999995   67889999999999999999999998654 7899999999972 


Q ss_pred             ---------CCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          341 ---------MLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       341 ---------~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                               .++|++||++.+++.++.  ...+.|++|.+..   ......|+|+++++|.
T Consensus        91 ~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~---~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           91 KSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRT---DKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSS---TTCCCCCEEEEEEEEE
T ss_pred             cccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCC---CCCCCceEEEEEEEEE
Confidence                     158999999999999993  3468999997432   2345789999999985

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.82  E-value=1e-19  Score=162.32  Aligned_cols=116  Identities=19%  Similarity=0.344  Sum_probs=101.2

Q ss_pred             ccceEEEEEEEEeecCCCCCC----------CCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEE
Q 008305          441 IVRGVLSITVIAAENLPKVDL----------IGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLI  510 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~----------~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~  510 (570)
                      ...|.|+|+|++|+||+++|.          .|.+||||++.+++ ....||+++++|.||+|||+|.|.+.+  ...|.
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~-~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~  102 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ-VRVGQTSTKQKTNKPTYNEEFCANVTD--GGHLE  102 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETT-EEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECC-EeeEEeeecCCCCCCccCcEEEEEcCC--CCEEE
Confidence            457999999999999998873          26799999999963 345799999999999999999999975  46899


Q ss_pred             EEEEECCCCCC-ceeEEEEEeccccccC----ceEEEEEEecCCCCeEEEEEEEEE
Q 008305          511 LDVYDHDTFGK-DKMGKCIMTLTRVMME----GEIQDSFHIDGTKSGKLFLNLKWT  561 (570)
Q Consensus       511 i~V~d~~~~~~-d~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~G~i~l~~~~~  561 (570)
                      |+|||++..++ |+||++.|+++++..+    ...+.||+|++  +|+|+++++|.
T Consensus       103 ~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--~G~i~l~l~~~  156 (157)
T 2fk9_A          103 LAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVITLT  156 (157)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--SCEEEEEEEEC
T ss_pred             EEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--CcEEEEEEEEE
Confidence            99999998875 6999999999999865    56799999986  79999999984

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=4.7e-19  Score=156.47  Aligned_cols=122  Identities=25%  Similarity=0.437  Sum_probs=106.9

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecC---CCcEEEEEEEECCC
Q 008305          442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG---QHEMLILDVYDHDT  518 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~V~d~~~  518 (570)
                      ..|.|.|+|++|+||+..+. |.+||||++++.+  .+++|++++++.||+|||+|.|.+...   ....|.|+|||++.
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~   81 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKD--EKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET   81 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSS--CEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECC--EeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC
Confidence            46899999999999999998 9999999999964  678999999999999999999999753   46789999999998


Q ss_pred             CCC-ceeEEEEEeccccccCceEEEEEE---ecCC----CCeEEEEEEEEEecCCC
Q 008305          519 FGK-DKMGKCIMTLTRVMMEGEIQDSFH---IDGT----KSGKLFLNLKWTPQLVL  566 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~---L~~~----~~G~i~l~~~~~p~~~~  566 (570)
                      .++ ++||++.+++.++..+.....|++   |.+.    ..|+|+++++|.|...-
T Consensus        82 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~~~  137 (140)
T 2dmh_A           82 IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPPSGP  137 (140)
T ss_dssp             SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCCBSS
T ss_pred             CCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECCCCC
Confidence            866 699999999999988888888988   6443    35999999999987653

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.80  E-value=5.8e-19  Score=155.05  Aligned_cols=122  Identities=25%  Similarity=0.490  Sum_probs=106.4

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccC-CCCCCeeeeEEEEEeecCCCcEEEEEEEECCCC
Q 008305          441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAH-DTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTF  519 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~  519 (570)
                      ...|.|.|+|++|++|+..+..|.+||||++++++  .+++|++++ ++.||.|||+|.|.+.+ ....|.|+|||++..
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~   83 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--QDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS--CEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSC
T ss_pred             CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECC--ccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCC
Confidence            35799999999999999999889999999999964  567999998 89999999999999986 577899999999988


Q ss_pred             CC-ceeEEEEEeccccccCc-eEEEEEEec--CCCCeEEEEEEEEEecCC
Q 008305          520 GK-DKMGKCIMTLTRVMMEG-EIQDSFHID--GTKSGKLFLNLKWTPQLV  565 (570)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~-~~~~w~~L~--~~~~G~i~l~~~~~p~~~  565 (570)
                      ++ ++||++.++|.++...+ ...+||+|.  +...|+|+++++|.|...
T Consensus        84 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~~~  133 (136)
T 1wfj_A           84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECCS
T ss_pred             CCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeCCC
Confidence            65 69999999999995444 457899985  345799999999999753

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.79  E-value=1.2e-18  Score=156.34  Aligned_cols=121  Identities=26%  Similarity=0.473  Sum_probs=98.6

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC----ceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEEC
Q 008305          441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG----NRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDH  516 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~  516 (570)
                      ...+.|+|+|++|+||+..+..|.+||||++++....    .+++|++++++.||.|||+|.|.+.. ....|.|+|||+
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~l~~~V~d~   95 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP-QQHRLLFEVFDE   95 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT-TTCEEEEEEEEC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC-CCCEEEEEEEEC
Confidence            4579999999999999999988999999999997422    57899999999999999999999975 467899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccCceE------EEEEEecC-----CCCeEEEEEEEEEe
Q 008305          517 DTFGK-DKMGKCIMTLTRVMMEGEI------QDSFHIDG-----TKSGKLFLNLKWTP  562 (570)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~------~~w~~L~~-----~~~G~i~l~~~~~p  562 (570)
                      +..++ ++||++.++|.++......      .+||+|..     ...|+|+++++|.|
T Consensus        96 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           96 NRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             CSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             CCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            98865 6999999999999865532      59999964     34799999999986

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.79  E-value=3.3e-18  Score=152.50  Aligned_cols=116  Identities=28%  Similarity=0.512  Sum_probs=101.6

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCC-
Q 008305          441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTF-  519 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~-  519 (570)
                      ...|.|.|+|++|+||+..+..|.+||||+++++  ..+++|++++++.||.|||+|.|.+.++ .+.|.|+|||++.. 
T Consensus        14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~   90 (148)
T 3kwu_A           14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVG--KTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDI   90 (148)
T ss_dssp             -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEET--TEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSH
T ss_pred             ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC--CEEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCc
Confidence            3479999999999999999999999999999994  4788999999999999999999999754 57899999999985 


Q ss_pred             ----------C-CceeEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEEEEE
Q 008305          520 ----------G-KDKMGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNLKWT  561 (570)
Q Consensus       520 ----------~-~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~  561 (570)
                                + +++||++.+++.++  .....+||+|...     ..|+|+++++|.
T Consensus        91 ~~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           91 KSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             cccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                      4 47999999999998  4566899999742     469999999986

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.79  E-value=6e-19  Score=154.13  Aligned_cols=124  Identities=23%  Similarity=0.384  Sum_probs=102.0

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCC
Q 008305          263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPML  342 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~  342 (570)
                      ...|+|+|++|++|++.|..|.+||||++++.+. .+.++|+++++++||+|||+|.|.+.+..  .|.|+|||++.. +
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~l~~~v~d~d~~-~   79 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS-GQCHSTDTVKNTLDPKWNQHYDLYVGKTD--SITISVWNHKKI-H   79 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT-CCEEECCCCSSCSSCEEEEEEEEEEETTC--CEEEEEEEGGGT-T
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC-CceEECCccCCCCCCCccCEEEEEeCCCC--EEEEEEEECCCC-C
Confidence            4589999999999999999999999999999632 47899999999999999999999998653  599999999988 5


Q ss_pred             C---CceEEEEEEEccccC-CCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          343 A---PEIIGIAQIALKELE-PGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       343 ~---d~~lG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      +   |++||++.+++.++. .......|++|..... .......|+|++++++
T Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~-~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           80 KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNP-SDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSST-TCCCCCCSEEEEEEEE
T ss_pred             CCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCC-CCCCceeEEEEEEEEc
Confidence            5   899999999999882 2233457889865321 2234579999999875

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.79  E-value=7e-19  Score=154.53  Aligned_cols=117  Identities=21%  Similarity=0.453  Sum_probs=100.9

Q ss_pred             cceEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEE
Q 008305          442 VRGVLSITVIAAENLPKVDLIGK-----------ADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLI  510 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~~~g~-----------~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~  510 (570)
                      ..|.|+|+|++|+||+..+..+.           +||||++.+++ ....+|+++++|.||.|||+|+|.+.+.  ..|.
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~-~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~   80 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD-SRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIE   80 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT-EEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECC-eEeeeeeEECCCcCCccCCEEEEEecCC--CEEE
Confidence            36999999999999998875444           99999999953 3457999999999999999999999764  7899


Q ss_pred             EEEEECCCCCC-ceeEEEEEeccccccCc--eEEEEEEecCCCCeEEEEEEEEEec
Q 008305          511 LDVYDHDTFGK-DKMGKCIMTLTRVMMEG--EIQDSFHIDGTKSGKLFLNLKWTPQ  563 (570)
Q Consensus       511 i~V~d~~~~~~-d~lG~~~i~l~~l~~~~--~~~~w~~L~~~~~G~i~l~~~~~p~  563 (570)
                      |+|||++..++ ++||++.+++.++..+.  ....|++|+.  .|+|+++++|.+.
T Consensus        81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~i~l~l~~~~~  134 (136)
T 1gmi_A           81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEEE
T ss_pred             EEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC--CeEEEEEEEEEec
Confidence            99999998875 69999999999998653  4589999986  7999999999864

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.79  E-value=6.5e-19  Score=157.87  Aligned_cols=112  Identities=29%  Similarity=0.471  Sum_probs=100.0

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEe
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFD  336 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d  336 (570)
                      +....+.|.|+|++|++|+..+..+.+||||++++.+.+.+.++|+++++++||+|||+|.|.+...  ....|.|+|||
T Consensus        37 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  116 (152)
T 1rsy_A           37 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD  116 (152)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             EeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEE
Confidence            3457899999999999999999889999999999986556789999999999999999999988643  35789999999


Q ss_pred             CCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305          337 DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK  371 (570)
Q Consensus       337 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  371 (570)
                      ++.. ++|++||++.+++.++..+...+.|++|.+
T Consensus       117 ~d~~-~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          117 FDRF-SKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             CCSS-SCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCC-CCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            9998 889999999999999988888899999953

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.79  E-value=5.2e-19  Score=156.78  Aligned_cols=111  Identities=30%  Similarity=0.483  Sum_probs=99.9

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEeC
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFDD  337 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d~  337 (570)
                      ....|.|.|+|++|++|+..+..+.+||||++++.+.+.+.++|++++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus        30 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  109 (143)
T 3f04_A           30 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDF  109 (143)
T ss_dssp             ETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEEC
T ss_pred             eCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeC
Confidence            357899999999999999999889999999999986666789999999999999999999998633  457899999999


Q ss_pred             CCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305          338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK  371 (570)
Q Consensus       338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  371 (570)
                      +.. ++|++||++.++|.++..+...+.|++|.+
T Consensus       110 d~~-~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          110 DRF-SKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             CSS-SCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCC-CCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            998 899999999999999998888899999953

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=5.8e-19  Score=156.11  Aligned_cols=112  Identities=31%  Similarity=0.473  Sum_probs=99.3

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEec---CCCCeEEEEEEe
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED---ASTQHLTVRVFD  336 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~---~~~~~L~~~v~d  336 (570)
                      ....+.|.|+|++|++|+..+..|.+||||++++.+.+.+.++|+++++++||+|||+|.|.+..   .....|.|+|||
T Consensus        22 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d  101 (141)
T 2d8k_A           22 NFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLD  101 (141)
T ss_dssp             CSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEE
T ss_pred             eCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEE
Confidence            35688999999999999999988999999999998655678999999999999999999998532   235789999999


Q ss_pred             CCCCCCCCceEEEEEEEccccCCCeeeEEEEEeecc
Q 008305          337 DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKD  372 (570)
Q Consensus       337 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  372 (570)
                      ++.. ++|++||++.+++.++..+...+.|++|.+.
T Consensus       102 ~d~~-~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  136 (141)
T 2d8k_A          102 YDRF-SRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS  136 (141)
T ss_dssp             CCSS-SSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred             CCCC-CCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence            9998 8899999999999999988888999999654

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.78  E-value=1.4e-18  Score=152.06  Aligned_cols=117  Identities=29%  Similarity=0.540  Sum_probs=102.8

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCC
Q 008305          441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFG  520 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~  520 (570)
                      ...|.|.|+|++|++|+..+..|.+||||++++++  .+++|++++++.||.|||+|.|.+.+. ...|.|+|||++..+
T Consensus        10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d~~~   86 (133)
T 2ep6_A           10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN--DRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDK   86 (133)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT--EEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTE
T ss_pred             CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC--EEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECCCCC
Confidence            56799999999999999999899999999999954  678999999999999999999999753 578999999999886


Q ss_pred             C-ceeEEEEEeccccccCceEEEEEEecC-----CCCeEEEEEEEEEe
Q 008305          521 K-DKMGKCIMTLTRVMMEGEIQDSFHIDG-----TKSGKLFLNLKWTP  562 (570)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~~~~~p  562 (570)
                      + ++||++.+++.++..+.  .+||+|..     ...|+|+++++|..
T Consensus        87 ~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           87 PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             CCCeeEEEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEEEe
Confidence            5 79999999999986543  58999964     35799999999864

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.78  E-value=1.3e-18  Score=152.18  Aligned_cols=109  Identities=20%  Similarity=0.351  Sum_probs=95.5

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeC--CCceEEeeeeCCCCCCeeecEEEEE-EecC--CCCeEEEEEE
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPL--RDRMKTSKTINNELNPIWNEHFEFT-VEDA--STQHLTVRVF  335 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~Wne~f~f~-v~~~--~~~~L~~~v~  335 (570)
                      ...|.|.|+|++|++|+. +..|.+||||++++.+.  ....++|+++++++||+|||+|.|. +...  ....|.|+||
T Consensus        17 ~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~   95 (134)
T 2b3r_A           17 YRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVL   95 (134)
T ss_dssp             EETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred             ecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence            357899999999999997 66789999999999754  2457899999999999999999999 7532  4578999999


Q ss_pred             eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305          336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK  371 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  371 (570)
                      |++.. +++++||++.++++++..+...+.|++|.+
T Consensus        96 d~d~~-~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  130 (134)
T 2b3r_A           96 SAESL-RENFFLGGITLPLKDFNLSKETVKWYQLTA  130 (134)
T ss_dssp             ECCSS-SCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred             ECCCC-CCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence            99998 889999999999999988878899999954

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.78  E-value=9.8e-19  Score=159.60  Aligned_cols=125  Identities=22%  Similarity=0.286  Sum_probs=104.2

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP  340 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~  340 (570)
                      ...+.|.|+|++|++|++.+..+.+||||+++++   ++.++|+++++++||+|||+|.|.+..  .+.|.|+|||++..
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~---~~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~  107 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTL  107 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSS
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEEC---CEEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCC
Confidence            4678999999999999944434559999999997   478999999999999999999999853  67999999999998


Q ss_pred             CCCCceEEEEEEEccccCCC---ee--eEEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305          341 MLAPEIIGIAQIALKELEPG---KV--KDVWLKLVKDVKVQRDTKNRGQVHLELLYCPF  394 (570)
Q Consensus       341 ~~~d~~lG~~~i~l~~l~~~---~~--~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  394 (570)
                       ++|++||++.+++.++..+   ..  ...|++|...   ....+..|+|.+.+.|.+.
T Consensus       108 -~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~---~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          108 -KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD---KEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             -SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES---SCTTSEEEEEEEEEESEEC
T ss_pred             -CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC---CCCCcccEEEEEEEeeeec
Confidence             8999999999999998532   22  2679999754   2244678999999999876

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.78  E-value=2e-19  Score=161.15  Aligned_cols=110  Identities=18%  Similarity=0.236  Sum_probs=96.0

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC---CceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR---DRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV  334 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v  334 (570)
                      ....|.|.|+|++|++|+++|..|.+||||++++.+..   ..+++|+++++|+||+|||+|.|.+...  ....|.|+|
T Consensus        39 ~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V  118 (155)
T 2z0u_A           39 DEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDV  118 (155)
T ss_dssp             ETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEE
T ss_pred             cCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEE
Confidence            35688999999999999999999999999999998532   2378999999999999999999998642  246899999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCC-CeeeEEEEEee
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEP-GKVKDVWLKLV  370 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~-~~~~~~w~~L~  370 (570)
                      ||+|.. +++++||++.++++++.. +.....|++|.
T Consensus       119 ~d~d~~-~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          119 CTTDRS-HLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             EEECTT-SCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             EECCCC-CCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            999998 899999999999999963 56678999985

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.78  E-value=3.8e-18  Score=152.84  Aligned_cols=107  Identities=30%  Similarity=0.510  Sum_probs=94.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTF  519 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~  519 (570)
                      .+.|.|+|++|+||+..+..+.+||||++++.. +..++||++++++.||.|||+|.|.+...  ....|.|+|||++..
T Consensus        41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~  120 (152)
T 1rsy_A           41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  120 (152)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCC
Confidence            589999999999999999889999999999963 34678999999999999999999988632  467899999999988


Q ss_pred             CC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305          520 GK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT  549 (570)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (570)
                      ++ ++||++.++|.++..+....+||+|.+.
T Consensus       121 ~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A          121 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             SCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             CCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            65 6999999999999877788999999764

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.78  E-value=3.3e-18  Score=148.79  Aligned_cols=104  Identities=21%  Similarity=0.440  Sum_probs=87.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEee---cCCCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVE---DGQHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~---~~~~~~L~i~V~d~  516 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++..   +..+++|++++++.||.|||+|.|.+.   +.....|.|+|||+
T Consensus        17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~   96 (129)
T 2bwq_A           17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   96 (129)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence            589999999999999999999999999999843   246889999999999999999999852   22457899999999


Q ss_pred             CCCC---CceeEEEEEeccccccCceEEEEEEec
Q 008305          517 DTFG---KDKMGKCIMTLTRVMMEGEIQDSFHID  547 (570)
Q Consensus       517 ~~~~---~d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (570)
                      +..+   +++||++.++|.++.... ..+||+|+
T Consensus        97 d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           97 ARVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             -------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             CcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            9886   569999999999988765 78999984

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=2.8e-18  Score=151.63  Aligned_cols=108  Identities=29%  Similarity=0.478  Sum_probs=94.3

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEee---cCCCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVE---DGQHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~---~~~~~~L~i~V~d~~~  518 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++.. +..++||++++++.||.|||+|.|.+.   +.....|.|+|||++.
T Consensus        25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~  104 (141)
T 2d8k_A           25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR  104 (141)
T ss_dssp             SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC
Confidence            588999999999999999889999999999963 346889999999999999999999852   1245789999999998


Q ss_pred             CCC-ceeEEEEEeccccccCceEEEEEEecCCC
Q 008305          519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK  550 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~  550 (570)
                      .++ ++||++.+++.++.......+||+|.+..
T Consensus       105 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  137 (141)
T 2d8k_A          105 FSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG  137 (141)
T ss_dssp             SSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred             CCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence            865 69999999999998887789999997654

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.77  E-value=2.4e-18  Score=153.47  Aligned_cols=108  Identities=19%  Similarity=0.437  Sum_probs=93.6

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVD-LIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~  516 (570)
                      .+.|.|+|++|+||+..+ ..|.+||||++++...   ..+++|++++++.||.|||+|.|.+...  ....|.|+|||+
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~  101 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH  101 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence            589999999999999887 5789999999999743   2478999999999999999999998643  345799999999


Q ss_pred             CCCCC-ceeEEEEEeccccccCceEEEEEEecCCC
Q 008305          517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK  550 (570)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~  550 (570)
                      +..++ ++||++.++|.++.......+||+|.++.
T Consensus       102 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A          102 GRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             CGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred             CCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence            98876 69999999999998777778999998753

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.77  E-value=1.5e-18  Score=153.37  Aligned_cols=109  Identities=22%  Similarity=0.451  Sum_probs=93.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEe-e--cCCCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVV-E--DGQHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v-~--~~~~~~L~i~V~d~  516 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++..   ...+++|++++++.||+|||+|.|.+ .  +.....|.|+|||+
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~   99 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   99 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred             CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence            589999999999999999999999999999832   24678999999999999999999984 3  22457899999999


Q ss_pred             CCCC---CceeEEEEEeccccccCceEEEEEEecCCCCe
Q 008305          517 DTFG---KDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSG  552 (570)
Q Consensus       517 ~~~~---~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G  552 (570)
                      +..+   +++||++.++|.++.... ..+||+|.+...|
T Consensus       100 d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~g  137 (141)
T 1v27_A          100 ARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSG  137 (141)
T ss_dssp             CSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSSC
T ss_pred             CCCcCCCCceEEEEEEEccccCCCC-CCceEECcccccC
Confidence            9886   469999999999987655 7899999876655

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.77  E-value=5.4e-18  Score=155.74  Aligned_cols=121  Identities=26%  Similarity=0.482  Sum_probs=97.3

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC----ceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECC
Q 008305          442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG----NRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHD  517 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~  517 (570)
                      ..|.|.|+|++|++|+..+..|.+||||++++.+..    .+++|++++++.||.|||.|.|.+.. ....|.|+|||++
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~-~~~~L~~~V~d~d   84 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP-QRHRILFEVFDEN   84 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT-TTCEEEEEEEECC
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC-CCCEEEEEEEECC
Confidence            479999999999999999989999999999997432    56899999999999999999999974 4578999999999


Q ss_pred             CCCC-ceeEEEEEeccccccCceE-E-----EEEEecCC-----CCeEEEEEEEEEec
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEI-Q-----DSFHIDGT-----KSGKLFLNLKWTPQ  563 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~-~-----~w~~L~~~-----~~G~i~l~~~~~p~  563 (570)
                      ..++ ++||++.++|.++...... .     +||+|...     ..|+|+++++|.|.
T Consensus        85 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           85 RLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             ----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            8865 6999999999999876543 2     89999643     37999999999986

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.77  E-value=4.2e-18  Score=148.74  Aligned_cols=117  Identities=21%  Similarity=0.394  Sum_probs=99.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCC--
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFG--  520 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~--  520 (570)
                      ...|+|+|++|++|+..+..|.+||||++++++...+++|++++++.||.|||+|.|.+.+.  +.|.|+|||++..+  
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~~~   81 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIHKK   81 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTTSS
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCCCC
Confidence            47899999999999999999999999999996545789999999999999999999999764  34999999999876  


Q ss_pred             --CceeEEEEEeccccc-cCceEEEEEEecCC-------CCeEEEEEEEEE
Q 008305          521 --KDKMGKCIMTLTRVM-MEGEIQDSFHIDGT-------KSGKLFLNLKWT  561 (570)
Q Consensus       521 --~d~lG~~~i~l~~l~-~~~~~~~w~~L~~~-------~~G~i~l~~~~~  561 (570)
                        +++||++.+++.++. ......+|++|...       ..|+|+++++++
T Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~r  132 (132)
T 3pyc_A           82 QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQTR  132 (132)
T ss_dssp             TTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEEC
T ss_pred             CCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEcC
Confidence              479999999999884 33334578998643       279999999864

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.77  E-value=1.6e-18  Score=155.31  Aligned_cols=105  Identities=15%  Similarity=0.135  Sum_probs=91.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC----CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA----GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~----~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~  516 (570)
                      .+.|+|+|++|+||+.++..|.+||||++++...    ..++||+++++|.||+|||+|.|.+...  ....|.|+|||+
T Consensus        42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~  121 (155)
T 2z0u_A           42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTT  121 (155)
T ss_dssp             TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEE
T ss_pred             CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEEC
Confidence            5899999999999999999999999999999641    2378999999999999999999998642  356899999999


Q ss_pred             CCCCC-ceeEEEEEecccccc-CceEEEEEEec
Q 008305          517 DTFGK-DKMGKCIMTLTRVMM-EGEIQDSFHID  547 (570)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~-~~~~~~w~~L~  547 (570)
                      +..++ ++||++.++|.++.. .....+||+|.
T Consensus       122 d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          122 DRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             CTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             CCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            99876 699999999999963 55678999985

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.77  E-value=6.7e-18  Score=149.60  Aligned_cols=106  Identities=30%  Similarity=0.513  Sum_probs=94.1

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTF  519 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~  519 (570)
                      .+.|.|+|++|++|+..+..+.+||||++++.. +..+++|++++++.||.|||+|.|.+...  ....|.|+|||++..
T Consensus        33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~  112 (143)
T 3f04_A           33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  112 (143)
T ss_dssp             TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCC
Confidence            589999999999999999889999999999953 34578999999999999999999998632  457899999999998


Q ss_pred             CC-ceeEEEEEeccccccCceEEEEEEecC
Q 008305          520 GK-DKMGKCIMTLTRVMMEGEIQDSFHIDG  548 (570)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~  548 (570)
                      ++ ++||++.++|.++.......+||+|+.
T Consensus       113 ~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          113 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            65 699999999999988888899999975

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=1.3e-18  Score=153.97  Aligned_cols=109  Identities=27%  Similarity=0.427  Sum_probs=93.9

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC------------ceEeCcccCCCCCCeeeeEEEEE-ee--cCCCc
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG------------NRAKTRVAHDTLNPVWNQTFDFV-VE--DGQHE  507 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~------------~~~kT~v~~~t~nP~w~e~f~f~-v~--~~~~~  507 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++.+..            .++||+++++|.||.|||.|.|. +.  +....
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            37899999999999999999999999999996532            35799999999999999999997 53  22467


Q ss_pred             EEEEEEEECCCCCC-ceeEEEEEeccccccCceEEEEEEecCCCC
Q 008305          508 MLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKS  551 (570)
Q Consensus       508 ~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~  551 (570)
                      .|.|+|||++..++ ++||++.++|.++.......+||+|.+...
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~  141 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTE  141 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCCC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccCC
Confidence            89999999999876 699999999999987777789999987653

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.76  E-value=1.9e-18  Score=154.34  Aligned_cols=111  Identities=29%  Similarity=0.512  Sum_probs=95.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC-CCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG-QHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~V~d~~~  518 (570)
                      .+.|.|+|++|+||+..+..+.+||||++++...   ..++||++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            3789999999999999998899999999999742   4678999999999999999999999653 24689999999999


Q ss_pred             CCC-ceeEEEEEeccccccCceEEEEEEecCCCCeEE
Q 008305          519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKL  554 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i  554 (570)
                      .++ ++||++.++|.++... ...+||+|.+...|++
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g~~  145 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGEY  145 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHTT
T ss_pred             CCCCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCCcc
Confidence            865 6999999999999765 4789999987655543

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.76  E-value=6.5e-18  Score=151.44  Aligned_cols=109  Identities=21%  Similarity=0.387  Sum_probs=92.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecC-CCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDG-QHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~V~d~~~  518 (570)
                      .+.|.|+|++|+||+..+ .|.+||||++++..   ...+++|++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus        26 ~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  104 (153)
T 3fbk_A           26 DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRAS  104 (153)
T ss_dssp             SSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCC
Confidence            589999999999999998 69999999999953   23678999999999999999999998422 33569999999998


Q ss_pred             CC--CceeEEEEEecccccc-CceEEEEEEecCCCCe
Q 008305          519 FG--KDKMGKCIMTLTRVMM-EGEIQDSFHIDGTKSG  552 (570)
Q Consensus       519 ~~--~d~lG~~~i~l~~l~~-~~~~~~w~~L~~~~~G  552 (570)
                      .+  +++||++.++|.++.. .....+||+|.+...|
T Consensus       105 ~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g  141 (153)
T 3fbk_A          105 QSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG  141 (153)
T ss_dssp             SGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGG
T ss_pred             CCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhc
Confidence            75  4699999999999985 5678899999876544

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.76  E-value=8.8e-18  Score=146.97  Aligned_cols=111  Identities=18%  Similarity=0.277  Sum_probs=93.7

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEE-eecC--CCcEEEEEEE
Q 008305          441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFV-VEDG--QHEMLILDVY  514 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~-v~~~--~~~~L~i~V~  514 (570)
                      ...+.|.|+|++|+||+. +..|.+||||++++..   ...++||+++++|.||+|||+|.|. +...  ....|.|+||
T Consensus        17 ~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~   95 (134)
T 2b3r_A           17 YRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVL   95 (134)
T ss_dssp             EETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred             ecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence            346899999999999997 7788999999999843   2467899999999999999999999 7532  4678999999


Q ss_pred             ECCCCCC-ceeEEEEEeccccccCceEEEEEEecCCCCe
Q 008305          515 DHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKSG  552 (570)
Q Consensus       515 d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G  552 (570)
                      |++..++ ++||++.++|.++..+....+||+|.+.+.|
T Consensus        96 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~g  134 (134)
T 2b3r_A           96 SAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATYL  134 (134)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC----
T ss_pred             ECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCccCC
Confidence            9998876 6999999999999887788999999887654

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.76  E-value=3.3e-18  Score=148.72  Aligned_cols=108  Identities=25%  Similarity=0.427  Sum_probs=89.9

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEe---cCCCCeEEEEE
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVE---DASTQHLTVRV  334 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~---~~~~~~L~~~v  334 (570)
                      ....|.|.|+|++|++|+..+..|.+||||++++.+.+  ...++|+++++++||+|||+|.|.+.   +.....|.|+|
T Consensus        14 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V   93 (129)
T 2bwq_A           14 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL   93 (129)
T ss_dssp             ETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEE
T ss_pred             ccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEE
Confidence            35678999999999999999988999999999997543  45789999999999999999999853   22356899999


Q ss_pred             EeCCCCCCC--CceEEEEEEEccccCCCeeeEEEEEe
Q 008305          335 FDDEGPMLA--PEIIGIAQIALKELEPGKVKDVWLKL  369 (570)
Q Consensus       335 ~d~d~~~~~--d~~lG~~~i~l~~l~~~~~~~~w~~L  369 (570)
                      ||++.. ++  +++||++.+++.++.... .+.|++|
T Consensus        94 ~d~d~~-~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L  128 (129)
T 2bwq_A           94 WDQARV-REEESEFLGEILIELETALLDD-EPHWYKL  128 (129)
T ss_dssp             EEC--------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred             EECCcC-cCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence            999998 66  999999999999997655 7899987

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=6.5e-18  Score=149.49  Aligned_cols=107  Identities=30%  Similarity=0.422  Sum_probs=91.9

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+..| +||||++++...   ..+++|++++++.||+|||+|.|.+...  ....|.|+|||++
T Consensus        23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  101 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSG  101 (142)
T ss_dssp             TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECC
Confidence            588999999999999999888 999999999532   2578999999999999999999998532  3458999999999


Q ss_pred             CCC--C-ceeEEEEEeccccccCceEEEEEEecCCC
Q 008305          518 TFG--K-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK  550 (570)
Q Consensus       518 ~~~--~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~  550 (570)
                      ..+  + ++||++.++|.++.......+||+|.+..
T Consensus       102 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~  137 (142)
T 2dmg_A          102 GFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS  137 (142)
T ss_dssp             CSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSC
T ss_pred             CccccCCcEEEEEEEecccccccccccceeeccCCC
Confidence            874  3 59999999999998777778999997653

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.75  E-value=2.3e-18  Score=153.52  Aligned_cols=112  Identities=18%  Similarity=0.330  Sum_probs=97.6

Q ss_pred             cCCceEEEEEEEEecCCCCCC-CCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305          260 LKPCGTLDVKLVQAKELTNKD-LIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV  334 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~-~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v  334 (570)
                      ....|.|.|+|++|++|+..+ ..|.+||||++++.+...  .+++|+++++++||+|||+|.|.+...  ....|.|+|
T Consensus        19 ~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V   98 (148)
T 3fdw_A           19 EQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSV   98 (148)
T ss_dssp             ETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEE
T ss_pred             eCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEE
Confidence            456899999999999999887 578999999999986543  378999999999999999999998654  245799999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeecc
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKD  372 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  372 (570)
                      ||++.. ++|++||++.++|.++..+.....|++|.+.
T Consensus        99 ~d~d~~-~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  135 (148)
T 3fdw_A           99 WHHGRF-GRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK  135 (148)
T ss_dssp             EEECGG-GCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred             EECCCC-cCCcEEEEEEEEcccccccCCccceEECcCc
Confidence            999998 8899999999999999877677899999754

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=2.1e-17  Score=145.43  Aligned_cols=105  Identities=15%  Similarity=0.204  Sum_probs=89.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC--CCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK--AGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~  518 (570)
                      .+.|.|+|++|++   .+..|.+||||++++..  +..++||++++++.||+|||+|.|.+...  ....|.|+|||++.
T Consensus        25 ~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~  101 (138)
T 1wfm_A           25 KAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             TTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC
Confidence            5899999999994   57788999999999953  23468999999999999999999998643  35689999999998


Q ss_pred             CCC-ceeEEEEEeccccccCceEEEEEEecCCC
Q 008305          519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK  550 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~  550 (570)
                      +++ ++||++.++|.++.......+|++|....
T Consensus       102 ~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~  134 (138)
T 1wfm_A          102 FSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             SCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             CCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence            866 79999999999997666778999998654

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=4.7e-17  Score=143.21  Aligned_cols=108  Identities=23%  Similarity=0.441  Sum_probs=91.4

Q ss_pred             ceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEE-eecC--CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLI-GKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFV-VEDG--QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~-v~~~--~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+.. |.+||||++++.. +..+++|++++++.||+|||+|.|. +...  ....|.|+|||++
T Consensus        21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d  100 (138)
T 1ugk_A           21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD  100 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECC
Confidence            58999999999999999985 8999999999974 3478999999999999999999996 6432  3468999999999


Q ss_pred             CCCC-ceeEEEEEeccccccCc-eEEEEEEecCCC
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEG-EIQDSFHIDGTK  550 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~-~~~~w~~L~~~~  550 (570)
                      ..++ ++||++.++|.++.... ....|++|+...
T Consensus       101 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~  135 (138)
T 1ugk_A          101 RFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP  135 (138)
T ss_dssp             SSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred             CCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCC
Confidence            8865 69999999999998654 446678987653

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=9.8e-18  Score=147.58  Aligned_cols=111  Identities=18%  Similarity=0.270  Sum_probs=95.0

Q ss_pred             cCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEE-EecC--CCCeEEEEEE
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLI-GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFT-VEDA--STQHLTVRVF  335 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~-v~~~--~~~~L~~~v~  335 (570)
                      ....|.|.|+|++|++|+..+.. +.+||||++++.+.+.+.++|+++++++||+|||+|.|. +...  ....|.|+||
T Consensus        18 ~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~   97 (138)
T 1ugk_A           18 NFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTIL   97 (138)
T ss_dssp             EGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEE
T ss_pred             ECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEE
Confidence            35688999999999999999985 899999999998655678999999999999999999995 5432  3468999999


Q ss_pred             eCCCCCCCCceEEEEEEEccccCCCe-eeEEEEEeec
Q 008305          336 DDEGPMLAPEIIGIAQIALKELEPGK-VKDVWLKLVK  371 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~  371 (570)
                      |++.. ++|++||++.++|.++..+. ....|++|.+
T Consensus        98 d~d~~-~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~  133 (138)
T 1ugk_A           98 SFDRF-SRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             EECSS-CCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             ECCCC-CCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence            99998 89999999999999997754 3456788853

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.74  E-value=7.1e-18  Score=149.23  Aligned_cols=110  Identities=26%  Similarity=0.468  Sum_probs=96.5

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEE-EecC--CCCeEEEEEE
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFT-VEDA--STQHLTVRVF  335 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~-v~~~--~~~~L~~~v~  335 (570)
                      .+.|.|.|+|++|++|+..+..|.+||||++++.+..  ...++|+++++++||+|||+|.|. +...  ....|.|+||
T Consensus        26 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  105 (142)
T 2chd_A           26 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVC  105 (142)
T ss_dssp             GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence            5788999999999999999988999999999998532  357899999999999999999998 5422  2368999999


Q ss_pred             eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305          336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK  371 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  371 (570)
                      |++.. ++|++||++.+++.++..+.....|++|..
T Consensus       106 d~d~~-~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          106 DEDKF-GHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             EECTT-SCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             ECCCC-CCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            99998 889999999999999998888889998854

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.74  E-value=1.2e-17  Score=148.94  Aligned_cols=109  Identities=30%  Similarity=0.501  Sum_probs=95.4

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecCC-CCeEEEEEEeCC
Q 008305          262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDAS-TQHLTVRVFDDE  338 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~~-~~~L~~~v~d~d  338 (570)
                      ..|.|.|+|++|++|+..+..+.+||||++++.+..  ...++|+++++++||+|||+|.|.+.... ...|.|+|||++
T Consensus        29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  108 (149)
T 1a25_A           29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  108 (149)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECC
Confidence            357899999999999999988999999999998532  35789999999999999999999987532 358999999999


Q ss_pred             CCCCCCceEEEEEEEccccCCCeeeEEEEEeecc
Q 008305          339 GPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKD  372 (570)
Q Consensus       339 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  372 (570)
                      .. ++|++||++.+++.++..+. .+.|++|.+.
T Consensus       109 ~~-~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~  140 (149)
T 1a25_A          109 LT-SRNDFMGSLSFGISELQKAG-VDGWFKLLSQ  140 (149)
T ss_dssp             SS-SCCEEEEEEEEEHHHHTTCC-EEEEEECBCH
T ss_pred             CC-CCCCEEEEEEEEHHHhCcCc-cCCeEEccCC
Confidence            98 88999999999999998764 7899999653

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=2.8e-18  Score=151.88  Aligned_cols=111  Identities=25%  Similarity=0.406  Sum_probs=95.2

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEE
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVF  335 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~  335 (570)
                      ....|.|.|+|++|++|+..+..| +||||++++.+.+.  ..++|+++++++||+|||+|.|.+...  ....|.|+||
T Consensus        20 ~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~   98 (142)
T 2dmg_A           20 SSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVK   98 (142)
T ss_dssp             ETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEE
T ss_pred             eCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEE
Confidence            356889999999999999999888 99999999985444  678999999999999999999998532  3358999999


Q ss_pred             eCCCCCCC--CceEEEEEEEccccCCCeeeEEEEEeecc
Q 008305          336 DDEGPMLA--PEIIGIAQIALKELEPGKVKDVWLKLVKD  372 (570)
Q Consensus       336 d~d~~~~~--d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  372 (570)
                      |++.. +.  |++||++.+++.++..+.....|++|.+.
T Consensus        99 d~d~~-~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~  136 (142)
T 2dmg_A           99 NSGGF-LSKDKGLLGKVLVALASEELAKGWTQWYDLTED  136 (142)
T ss_dssp             ECCCS-SCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred             ECCCc-cccCCcEEEEEEEecccccccccccceeeccCC
Confidence            99987 53  57999999999999877678899999653

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.74  E-value=3.1e-17  Score=145.11  Aligned_cols=107  Identities=29%  Similarity=0.521  Sum_probs=92.9

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEE-eecC--CCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFV-VEDG--QHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~-v~~~--~~~~L~i~V~d~  516 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++.+.   ..++||++++++.||.|||+|.|. +...  ....|.|+|||+
T Consensus        28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  107 (142)
T 2chd_A           28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDE  107 (142)
T ss_dssp             GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEEC
Confidence            5899999999999999998899999999999742   368899999999999999999998 5421  236899999999


Q ss_pred             CCCCC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305          517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT  549 (570)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (570)
                      +..++ ++||++.+++.++..+.....|++|+..
T Consensus       108 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~p  141 (142)
T 2chd_A          108 DKFGHNEFIGETRFSLKKLKANQRKNFNICLERV  141 (142)
T ss_dssp             CTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBCC
T ss_pred             CCCCCCcEEEEEEEEHHHcCCCCccEEEEecccC
Confidence            98876 6999999999999887777888888753

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=6.9e-17  Score=160.35  Aligned_cols=121  Identities=30%  Similarity=0.540  Sum_probs=106.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTF  519 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~  519 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++.. ...+++|++++++.||.|||+|.|.+...  ....|.|+|||++..
T Consensus        18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~   97 (284)
T 2r83_A           18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF   97 (284)
T ss_dssp             TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCC
Confidence            589999999999999999899999999999974 24578999999999999999999998643  457899999999988


Q ss_pred             CC-ceeEEEEEeccccccCceEEEEEEecCC------CCeEEEEEEEEEec
Q 008305          520 GK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT------KSGKLFLNLKWTPQ  563 (570)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~  563 (570)
                      ++ ++||++.++|.++..+....+|++|...      ..|+|++.++|.|.
T Consensus        98 ~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~  148 (284)
T 2r83_A           98 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPT  148 (284)
T ss_dssp             SCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETT
T ss_pred             CCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCc
Confidence            65 7999999999999888888999999643      46999999999864

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=3.5e-18  Score=151.05  Aligned_cols=111  Identities=24%  Similarity=0.419  Sum_probs=95.1

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEE-e--cCCCCeEEEEE
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTV-E--DASTQHLTVRV  334 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v-~--~~~~~~L~~~v  334 (570)
                      ....+.|.|+|++|++|+..+..|.+||||++++.+.+  .+.++|+++++++||+|||+|.|.+ .  +.....|.|+|
T Consensus        17 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V   96 (141)
T 1v27_A           17 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL   96 (141)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEE
T ss_pred             eCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEE
Confidence            35678999999999999999988999999999996432  4578999999999999999999985 3  22347899999


Q ss_pred             EeCCCCCCC--CceEEEEEEEccccCCCeeeEEEEEeecc
Q 008305          335 FDDEGPMLA--PEIIGIAQIALKELEPGKVKDVWLKLVKD  372 (570)
Q Consensus       335 ~d~d~~~~~--d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  372 (570)
                      ||++.. ++  +++||++.+++.++.... ...|++|.+.
T Consensus        97 ~d~d~~-~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~  134 (141)
T 1v27_A           97 WDQARV-REEESEFLGEILIELETALLDD-EPHWYKLQTH  134 (141)
T ss_dssp             EEBCSS-SSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred             EECCCC-cCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence            999998 65  999999999999997655 7899999754

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.74  E-value=2.6e-17  Score=150.34  Aligned_cols=106  Identities=25%  Similarity=0.368  Sum_probs=92.4

Q ss_pred             ceEEEEEEEEeecCCCCCC-CCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEE-ECC
Q 008305          443 RGVLSITVIAAENLPKVDL-IGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVY-DHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~-~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~-d~~  517 (570)
                      .+.|.|+|++|+||+..+. .|.+||||++++....   .++||++++++.||+|||+|.|.+. .....|.|+|| |++
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~-~~~~~L~~~V~~d~d  107 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDES-PQGKVLQVIVWGDYG  107 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSC-CTTEEEEEEEEEECS
T ss_pred             CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEec-CCCCEEEEEEEEcCC
Confidence            4889999999999999985 6899999999997533   3789999999999999999999985 35688999999 999


Q ss_pred             CCCC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT  549 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (570)
                      ..++ ++||++.++|.++..+....+||+|.+.
T Consensus       108 ~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A          108 RMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             TTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            8876 6999999999999877788999999765

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=3.2e-18  Score=152.47  Aligned_cols=112  Identities=21%  Similarity=0.320  Sum_probs=95.6

Q ss_pred             ccCCceEEEEEEEEecCCCCC-CC------CCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC--CCCe
Q 008305          259 ELKPCGTLDVKLVQAKELTNK-DL------IGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA--STQH  329 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~-~~------~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~  329 (570)
                      +....|.|.|+|++|++|+.. +.      .+.+||||++++.+...+.++|+++++++||+|||+|.|.+...  ....
T Consensus        21 y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~  100 (147)
T 2enp_A           21 YDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRT  100 (147)
T ss_dssp             EETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSE
T ss_pred             EcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCE
Confidence            345789999999999999984 33      35899999999986556788999999999999999999998642  2358


Q ss_pred             EEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305          330 LTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK  371 (570)
Q Consensus       330 L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  371 (570)
                      |.|+|||++.. ++|++||++.++|.++..+.....|+.|.+
T Consensus       101 L~~~V~d~d~~-~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~  141 (147)
T 2enp_A          101 LLLTVVDFDKF-SRHCVIGKVSVPLCEVDLVKGGHWWKALIP  141 (147)
T ss_dssp             EEEEEECCSTT-CCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred             EEEEEEECCCC-cCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence            99999999998 889999999999999987766788999864

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=9.7e-18  Score=147.53  Aligned_cols=109  Identities=16%  Similarity=0.120  Sum_probs=93.2

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeC-CCceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEe
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPL-RDRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFD  336 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~-~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d  336 (570)
                      ....|.|.|+|++|++   ++..|.+||||++++.+. +...++|+++++++||+|||+|.|.+...  ....|.|+|||
T Consensus        22 ~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d   98 (138)
T 1wfm_A           22 DCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRT   98 (138)
T ss_dssp             ETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEE
T ss_pred             eCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEE
Confidence            3567899999999993   677889999999999753 23468999999999999999999998643  24689999999


Q ss_pred             CCCCCCCCceEEEEEEEccccCCCeeeEEEEEeecc
Q 008305          337 DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKD  372 (570)
Q Consensus       337 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  372 (570)
                      +|.+ ++|++||++.++|.++..+.....|++|.+.
T Consensus        99 ~d~~-~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~  133 (138)
T 1wfm_A           99 CDRF-SRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             CCSS-CTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             CCCC-CCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence            9998 8999999999999999766677899999653

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.74  E-value=1e-17  Score=153.02  Aligned_cols=110  Identities=25%  Similarity=0.385  Sum_probs=95.9

Q ss_pred             CceEEEEEEEEecCCCCCCC-CCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEE-eC
Q 008305          262 PCGTLDVKLVQAKELTNKDL-IGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVF-DD  337 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~-~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~-d~  337 (570)
                      ..|.|.|+|++|++|+..|. .|.+||||++++.+.+.  ..++|+++++++||+|||+|.|.+.. ....|.|+|| |+
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~  106 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY  106 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence            47899999999999999985 68999999999986432  37899999999999999999999864 4578999999 99


Q ss_pred             CCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccc
Q 008305          338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDV  373 (570)
Q Consensus       338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  373 (570)
                      +.. ++|++||++.++|.++..+...+.|++|.+..
T Consensus       107 d~~-~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  141 (171)
T 2q3x_A          107 GRM-DHKCFMGVAQILLEELDLSSMVIGWYKLFPPS  141 (171)
T ss_dssp             STT-CSSEEEEEEEECGGGSCTTSCEEEEEECBCGG
T ss_pred             CCC-CCCCEEEEEEEEHHHcccCCCcceeEECCCcc
Confidence            998 88999999999999998777789999997653

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.73  E-value=1.9e-17  Score=148.36  Aligned_cols=111  Identities=26%  Similarity=0.413  Sum_probs=95.2

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEe--cCCCCeEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVE--DASTQHLTVRV  334 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~--~~~~~~L~~~v  334 (570)
                      +....|.|.|+|++|++|+..+ .|.+||||++++.+..  ...++|+++++++||+|||+|.|.+.  +.. ..|.|+|
T Consensus        22 y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~L~i~V   99 (153)
T 3fbk_A           22 IDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQ-KRLLVTV   99 (153)
T ss_dssp             EEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTT-SEEEEEE
T ss_pred             EECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhC-CEEEEEE
Confidence            3457899999999999999998 6899999999997532  35789999999999999999999983  333 5699999


Q ss_pred             EeCCCCCCC-CceEEEEEEEccccCC-CeeeEEEEEeecc
Q 008305          335 FDDEGPMLA-PEIIGIAQIALKELEP-GKVKDVWLKLVKD  372 (570)
Q Consensus       335 ~d~d~~~~~-d~~lG~~~i~l~~l~~-~~~~~~w~~L~~~  372 (570)
                      ||++.. ++ |++||++.+++.++.. +.....|++|.+.
T Consensus       100 ~d~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~  138 (153)
T 3fbk_A          100 WNRASQ-SRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE  138 (153)
T ss_dssp             EECCSS-GGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred             EeCCCC-CCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence            999997 66 9999999999999984 6778899999764

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.73  E-value=8.2e-17  Score=145.28  Aligned_cols=108  Identities=31%  Similarity=0.551  Sum_probs=90.9

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++....   .+++|++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d  103 (159)
T 1tjx_A           24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  103 (159)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECC
Confidence            58999999999999999988999999999996432   478999999999999999999998643  2467999999999


Q ss_pred             CCCC-ceeEEEEEecccc----------cc--CceEEEEEEecCCC
Q 008305          518 TFGK-DKMGKCIMTLTRV----------MM--EGEIQDSFHIDGTK  550 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l----------~~--~~~~~~w~~L~~~~  550 (570)
                      ..++ ++||++.+++..+          ..  .....+||+|.+..
T Consensus       104 ~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~  149 (159)
T 1tjx_A          104 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE  149 (159)
T ss_dssp             SSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHH
T ss_pred             CCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCcc
Confidence            8865 6999999999853          32  34568999997643

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=2e-17  Score=147.30  Aligned_cols=108  Identities=25%  Similarity=0.342  Sum_probs=91.1

Q ss_pred             ceEEEEEEEEeecCCCC-CC------CCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEE
Q 008305          443 RGVLSITVIAAENLPKV-DL------IGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILD  512 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~-~~------~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~  512 (570)
                      .+.|.|+|++|+||+.. +.      .|.+||||++++.. ...+++|++++++.||+|||+|.|.+...  ....|.|+
T Consensus        25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~  104 (147)
T 2enp_A           25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLT  104 (147)
T ss_dssp             TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEE
T ss_pred             CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEE
Confidence            58999999999999984 33      35899999999964 23578999999999999999999998632  24589999


Q ss_pred             EEECCCCCC-ceeEEEEEeccccccCceEEEEEEecCCC
Q 008305          513 VYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK  550 (570)
Q Consensus       513 V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~  550 (570)
                      |||++..++ ++||++.++|.++........|++|.+..
T Consensus       105 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  143 (147)
T 2enp_A          105 VVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSG  143 (147)
T ss_dssp             EECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCCC
T ss_pred             EEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecCC
Confidence            999998866 69999999999998777778999998653

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.73  E-value=6.5e-17  Score=142.23  Aligned_cols=92  Identities=27%  Similarity=0.517  Sum_probs=80.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecCC--CcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDGQ--HEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++.+..   .+++|++++++.||.|||+|.|.+....  ...|.|+|||++
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~   94 (138)
T 3n5a_A           15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKD   94 (138)
T ss_dssp             TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECC
T ss_pred             CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECC
Confidence            58999999999999999988999999999996432   4789999999999999999999986432  368999999999


Q ss_pred             CCCC-ceeEEEEEecccc
Q 008305          518 TFGK-DKMGKCIMTLTRV  534 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l  534 (570)
                      ..++ ++||++.+++.++
T Consensus        95 ~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           95 KLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             SSSCCEEEEEEEESSSSC
T ss_pred             CCCCCcEEEEEEEccccC
Confidence            8865 6999999999964

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.72  E-value=4.2e-17  Score=148.75  Aligned_cols=121  Identities=21%  Similarity=0.315  Sum_probs=100.0

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCC
Q 008305          441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFG  520 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~  520 (570)
                      ...+.|.|+|++|++|+..+..+.+||||++++++  .++||++++++.||+|||+|.|.+.  ....|.|+|||++..+
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~--~~~kT~v~~~tlnP~Wne~f~f~v~--~~~~L~~~V~D~d~~~  108 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG--QSKKTEKCNNTNSPKWKQPLTVIVT--PVSKLHFRVWSHQTLK  108 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT--EEEECCCCSSCSSCEEEEEEEEEEC--TTCEEEEEEEECCSSS
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECC--EEeEccccCCCCCCeECCEEEEEeC--CCCEEEEEEEECCCCC
Confidence            34689999999999999444445599999999964  8899999999999999999999985  3788999999999886


Q ss_pred             C-ceeEEEEEeccccccCc-----eEEEEEEecCC-----CCeEEEEEEEEEecCC
Q 008305          521 K-DKMGKCIMTLTRVMMEG-----EIQDSFHIDGT-----KSGKLFLNLKWTPQLV  565 (570)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~-----~~~~w~~L~~~-----~~G~i~l~~~~~p~~~  565 (570)
                      + ++||++.++|.++....     ....|++|...     ..|+|.+.+++.+...
T Consensus       109 ~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~~~  164 (173)
T 2nq3_A          109 SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLES  164 (173)
T ss_dssp             CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEECC-
T ss_pred             CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeecch
Confidence            6 69999999999987432     23679999653     3799999999987643

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.72  E-value=3.8e-17  Score=147.47  Aligned_cols=113  Identities=27%  Similarity=0.413  Sum_probs=95.4

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV  334 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v  334 (570)
                      +....|.|.|+|++|++|+..+..|.+||||++++.+.+.  ..++|+++++++||+|||+|.|.+...  ....|.|+|
T Consensus        20 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V   99 (159)
T 1tjx_A           20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV   99 (159)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEE
Confidence            3457899999999999999999889999999999985432  468999999999999999999998643  245799999


Q ss_pred             EeCCCCCCCCceEEEEEEEcccc------------CCCeeeEEEEEeecc
Q 008305          335 FDDEGPMLAPEIIGIAQIALKEL------------EPGKVKDVWLKLVKD  372 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l------------~~~~~~~~w~~L~~~  372 (570)
                      ||++.. ++|++||++.+++..+            .++....+|++|.+.
T Consensus       100 ~d~d~~-~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~  148 (159)
T 1tjx_A          100 LDYDKI-GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (159)
T ss_dssp             EECCSS-SCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             EECCCC-CCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCc
Confidence            999998 8999999999999853            234567889998654

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.72  E-value=2e-18  Score=152.83  Aligned_cols=108  Identities=27%  Similarity=0.466  Sum_probs=93.9

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC-----------ceEEeeeeCCCCCCeeecEEEEE-Ee--cCCCC
Q 008305          263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD-----------RMKTSKTINNELNPIWNEHFEFT-VE--DASTQ  328 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~-----------~~~~T~~~~~t~nP~Wne~f~f~-v~--~~~~~  328 (570)
                      .|.|.|+|++|++|+..+..|.+||||++++.+..+           ..++|+++++++||+|||+|.|. +.  +....
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            689999999999999999889999999999985432           25789999999999999999997 53  22457


Q ss_pred             eEEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305          329 HLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK  371 (570)
Q Consensus       329 ~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  371 (570)
                      .|.|+|||++.. ++|++||++.+++.++..+...+.|++|.+
T Consensus        97 ~l~i~V~d~d~~-~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  138 (142)
T 1rh8_A           97 TLEVTVWDYDRF-SSNDFLGEVLIDLSSTSHLDNTPRWYPLKE  138 (142)
T ss_dssp             EEEEEEEEECSS-SCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred             EEEEEEEECCCC-CCCceEEEEEEeccccccCCCCCeEEECCc
Confidence            899999999998 889999999999999987666789999964

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.72  E-value=1.7e-16  Score=144.19  Aligned_cols=107  Identities=27%  Similarity=0.445  Sum_probs=89.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++...   ..+++|++++++.||+|||+|.|.+...  ....|.|+|||++
T Consensus        36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  115 (166)
T 2cm5_A           36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD  115 (166)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECC
Confidence            5899999999999999998999999999999742   3688999999999999999999998643  3568999999999


Q ss_pred             CCCC-ceeEEEEEeccccc------------cCceEEEEEEecCC
Q 008305          518 TFGK-DKMGKCIMTLTRVM------------MEGEIQDSFHIDGT  549 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~------------~~~~~~~w~~L~~~  549 (570)
                      ..++ ++||++.+++.++.            .+....+|+.|.+.
T Consensus       116 ~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~~  160 (166)
T 2cm5_A          116 IGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNE  160 (166)
T ss_dssp             SSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC-
T ss_pred             CCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCCc
Confidence            8876 69999999999853            22345677777643

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.72  E-value=9.4e-17  Score=143.90  Aligned_cols=91  Identities=29%  Similarity=0.442  Sum_probs=74.7

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCc---eEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN---RAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~---~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++.....   ++||++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d  108 (153)
T 1w15_A           29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE  108 (153)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCC
Confidence            589999999999999999889999999999954322   67999999999999999999998654  2468999999999


Q ss_pred             CCCC-ceeEEEEEeccc
Q 008305          518 TFGK-DKMGKCIMTLTR  533 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~  533 (570)
                      ..++ ++||++.+++.+
T Consensus       109 ~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          109 RGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             TTSCCEEEEEEEESTTC
T ss_pred             CCCCCcEEEEEEECCCC
Confidence            8865 699999999988

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.71  E-value=5.2e-17  Score=142.87  Aligned_cols=97  Identities=25%  Similarity=0.437  Sum_probs=85.2

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecCC--CCeEEEEEE
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDAS--TQHLTVRVF  335 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~~--~~~L~~~v~  335 (570)
                      ....|.|.|+|++|++|+..+..|.+||||++++.+.+.  ..++|++++++.||+|||+|.|.+....  ...|.|+||
T Consensus        12 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~   91 (138)
T 3n5a_A           12 NPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVM   91 (138)
T ss_dssp             ETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEE
T ss_pred             cCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEE
Confidence            356789999999999999999889999999999985432  3688999999999999999999986443  357999999


Q ss_pred             eCCCCCCCCceEEEEEEEcccc
Q 008305          336 DDEGPMLAPEIIGIAQIALKEL  357 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l  357 (570)
                      |++.. ++|++||++.+++.++
T Consensus        92 d~~~~-~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           92 DKDKL-SRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             ECCSS-SCCEEEEEEEESSSSC
T ss_pred             ECCCC-CCCcEEEEEEEccccC
Confidence            99998 8999999999999975

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.70  E-value=1.3e-16  Score=145.10  Aligned_cols=97  Identities=25%  Similarity=0.419  Sum_probs=85.8

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEE
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVF  335 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~  335 (570)
                      ....|.|.|+|++|++|+..+..|.+||||++++.+..  ...++|+++++++||+|||+|.|.+...  ....|.|+||
T Consensus        33 ~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~  112 (166)
T 2cm5_A           33 STQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVW  112 (166)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEE
T ss_pred             ECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEE
Confidence            45789999999999999999988999999999998532  3578999999999999999999998643  3468999999


Q ss_pred             eCCCCCCCCceEEEEEEEcccc
Q 008305          336 DDEGPMLAPEIIGIAQIALKEL  357 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l  357 (570)
                      |++.. ++|++||++.+++.++
T Consensus       113 d~d~~-~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A          113 DYDIG-KSNDYIGGCQLGISAK  133 (166)
T ss_dssp             ECCSS-SCCEEEEEEEEETTCC
T ss_pred             ECCCC-CCCcEEEeEEEecccC
Confidence            99998 8899999999999985

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.69  E-value=1.4e-16  Score=142.69  Aligned_cols=96  Identities=26%  Similarity=0.372  Sum_probs=79.4

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEEEecCC--CCeEEEEEE
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFTVEDAS--TQHLTVRVF  335 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~v~~~~--~~~L~~~v~  335 (570)
                      ....|.|.|+|++|++|+..+..|.+||||++++.+.+..  +++|+++++++||+|||+|.|.+....  ...|.|+||
T Consensus        26 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~  105 (153)
T 1w15_A           26 QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVL  105 (153)
T ss_dssp             ETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEE
T ss_pred             cCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEE
Confidence            3568999999999999999998899999999999864332  679999999999999999999987543  367999999


Q ss_pred             eCCCCCCCCceEEEEEEEccc
Q 008305          336 DDEGPMLAPEIIGIAQIALKE  356 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~  356 (570)
                      |++.. ++|++||++.+++.+
T Consensus       106 d~d~~-~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          106 DSERG-SRNEVIGRLVLGATA  125 (153)
T ss_dssp             ECCTT-SCCEEEEEEEESTTC
T ss_pred             eCCCC-CCCcEEEEEEECCCC
Confidence            99998 899999999999988

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.67  E-value=4.7e-16  Score=135.09  Aligned_cols=118  Identities=22%  Similarity=0.309  Sum_probs=83.1

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeee-CCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC
Q 008305          262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTI-NNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP  340 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~-~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~  340 (570)
                      +.|.|.|+|++|+++..   .|.+||||+++ .   . ..+|+++ .++.||+|||+|.|.+.+. ...|.|+|||+| .
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~---~-~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~   72 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V---Q-NVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-L   72 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E---T-TEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-S
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE-e---c-CEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-C
Confidence            56899999999998852   57899999999 3   2 2345544 4799999999999999864 457999999999 7


Q ss_pred             CCCCceEEEEEEEccccCCCe--eeEEEEEeeccccccCCCcceeE-------EEEEEEE
Q 008305          341 MLAPEIIGIAQIALKELEPGK--VKDVWLKLVKDVKVQRDTKNRGQ-------VHLELLY  391 (570)
Q Consensus       341 ~~~d~~lG~~~i~l~~l~~~~--~~~~w~~L~~~~~~~~~~~~~G~-------l~l~l~~  391 (570)
                       ++|++||++.++|+++....  ....|.++.-... ...++..|+       +.+++.|
T Consensus        73 -~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~G~~~p~~~~~~~~~~~  130 (131)
T 2cjt_A           73 -IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAI-MADSEICGTKDPTFHRILLDAHF  130 (131)
T ss_dssp             -SCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC-----------CCSCCCCCEEEEEEEE
T ss_pred             -CCCCeEEEEEEEHHHhhhcCCCCccccEEcccccc-cCCCcCcceECCCccEEEEEEEe
Confidence             79999999999999986432  1124555532211 123334444       7777665

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.65  E-value=1.3e-15  Score=130.11  Aligned_cols=117  Identities=20%  Similarity=0.323  Sum_probs=100.1

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeC-CCCCCeeecEEEEEEecC--CCCeEEEEEEeCCCCC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTIN-NELNPIWNEHFEFTVEDA--STQHLTVRVFDDEGPM  341 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d~d~~~  341 (570)
                      .|+|+|.+|++|+     |++|||+++.+.   +.+++|+++. ++.||+|||.|.|.+..+  .+..|.+.|+|++++ 
T Consensus        22 sL~V~l~~a~~Lp-----g~~Dp~akv~FR---g~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v-   92 (144)
T 3l9b_A           22 ALIVHLKTVSELR-----GRADRIAKVTFR---GQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV-   92 (144)
T ss_dssp             EEEEEEEEEESCC-----SCEEEEEEEEET---TEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT-
T ss_pred             EEEEEEEEecCCC-----CCCCCeEEEEEe---ccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc-
Confidence            6899999999998     579999999995   7889999997 699999999999999643  356899999999999 


Q ss_pred             CCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305          342 LAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPF  394 (570)
Q Consensus       342 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  394 (570)
                      +++++||++.++|+++........+..|.+.    +.....++|.++++|.|.
T Consensus        93 ~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~----n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           93 FSNKLIGTFRMVLQKVVEENRVEVSDTLIDD----NNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             SCCEEEEEEEEESHHHHHHSEEEEEEEEECT----TSCEEEEEEEEEEEEEET
T ss_pred             cCCCEEEEEEEEhHHhccCCeEEEeecccCC----CCCccccEEEEEEEecCC
Confidence            9999999999999999876666666666543    234556999999999985

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.64  E-value=8e-15  Score=155.90  Aligned_cols=164  Identities=20%  Similarity=0.293  Sum_probs=124.1

Q ss_pred             ceeEEEEEecccccc-CcchHHHHHHHHHHHHHhhccc-----c--ceeeEecCCCC------------CC-Cccc-CCc
Q 008305          206 DLDFTLKVVGGDISS-IPGISDAIEETIIDAIEDSITW-----P--VRQIIPILPGD------------YS-DLEL-KPC  263 (570)
Q Consensus       206 ~id~~l~~~g~~~~~-iP~l~~~i~~~i~~~i~~~~v~-----P--~~~~~~~~~~~------------~~-~~~~-~~~  263 (570)
                      -|++.+.|+. ++.. -+--..-++.++.+-+.+.-.+     |  |-. .+ ..|.            .. -.+. ...
T Consensus       317 ~I~~~l~PI~-~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~-~~-l~g~~C~C~C~~~~~t~~~~C~~~~~~  393 (540)
T 3nsj_A          317 LVDYSLEPLH-TLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQ-HK-SSHDSCQCECQDSKVTNQDCCPRQRGL  393 (540)
T ss_dssp             EEEEEEEEGG-GGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTE-EE-CSSCTTCEEESCTTTBCGGGCBSSTTE
T ss_pred             eEEEEEEEHH-HhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCC-cc-CCCCceEeeCCCCCCcccccccccCcc
Confidence            6888888874 4332 3445567888888888876555     4  322 22 2221            01 1111 358


Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEec-CCCCeEEEEEEeCCCCCC
Q 008305          264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED-ASTQHLTVRVFDDEGPML  342 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~-~~~~~L~~~v~d~d~~~~  342 (570)
                      |.|.|+|++|++|+. |..|++||||+++++   ++.++|+++++++||+|||+|.|.+.+ ...+.|.|+|||+|.. +
T Consensus       394 ~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~---~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~-~  468 (540)
T 3nsj_A          394 AHLVVSNFRAEHLWG-DYTTATDAYLKVFFG---GQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYG-W  468 (540)
T ss_dssp             EEEEEEEEEEESCCC-SSCSCCCEEEEEEET---TEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSS-S
T ss_pred             cEEEEEEEEccCCCc-ccCCCcCeEEEEEEC---CEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCC-C
Confidence            999999999999998 988999999999997   567999999999999999999998653 4567899999999998 8


Q ss_pred             CCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          343 APEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       343 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                      .||+||++.++|.   .+ ..+.|++|           ..|.|+++++..
T Consensus       469 ~dD~LG~~~~~L~---~g-~~~~~~~l-----------~~G~l~~~~~~~  503 (540)
T 3nsj_A          469 DDDLLGSCDRSPH---SG-FHEVTCEL-----------NHGRVKFSYHAK  503 (540)
T ss_dssp             CCEEEEEEEECCC---SE-EEEEEEEC-----------SSSEEEEEEEEE
T ss_pred             CCCEEEEEEEEee---CC-cEEEEEEc-----------CCeEEEEEEEEE
Confidence            8999999999987   23 46788876           258888887653

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.64  E-value=7.1e-16  Score=166.06  Aligned_cols=120  Identities=25%  Similarity=0.387  Sum_probs=105.0

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP  340 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~  340 (570)
                      ...|.|.|+|++|++|++.|..|.+||||+++++   .+.++|+++++|+||+|||+|.|.+.....+.|.|+|||+|..
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~---~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~  460 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMG---SQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF  460 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEEC---CeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence            4679999999999999999989999999999995   6789999999999999999999999877778899999999998


Q ss_pred             CCCCceEEEEEEEccccCCCee----eEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          341 MLAPEIIGIAQIALKELEPGKV----KDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       341 ~~~d~~lG~~~i~l~~l~~~~~----~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                       ++|++||++.+++.++..+..    ...|+++.        +...|+|++.+.+.
T Consensus       461 -~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~--------~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          461 -SPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH--------EVPTGEVWVRFDLQ  507 (510)
T ss_dssp             -SSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB--------SSSSCEEEEEEEEE
T ss_pred             -CCCCceEEEEEEHHHhccccCCCCceeeeecCC--------CCCCceEEEEEEEE
Confidence             899999999999999976433    66899883        34679998888764

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.64  E-value=1.4e-15  Score=151.68  Aligned_cols=121  Identities=29%  Similarity=0.459  Sum_probs=99.7

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTF  519 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~  519 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++.. +..+++|++++++.||.|||+|.|.+...  ....|.|+|||++.+
T Consensus        19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~   98 (296)
T 1dqv_A           19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF   98 (296)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred             CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCC
Confidence            589999999999999999999999999999842 34678999999999999999999998633  345899999999988


Q ss_pred             CC-ceeEEEEEe-cccccc-CceEEEEEEecCC-----CCeEEEEEEEEEec
Q 008305          520 GK-DKMGKCIMT-LTRVMM-EGEIQDSFHIDGT-----KSGKLFLNLKWTPQ  563 (570)
Q Consensus       520 ~~-d~lG~~~i~-l~~l~~-~~~~~~w~~L~~~-----~~G~i~l~~~~~p~  563 (570)
                      ++ ++||++.++ +.++.. ......|++|...     ..|+|.+.+.|.|.
T Consensus        99 ~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~  150 (296)
T 1dqv_A           99 SRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPT  150 (296)
T ss_dssp             SCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETT
T ss_pred             CCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEeccc
Confidence            65 799999996 555543 2345679999642     36999999999764

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.62  E-value=3.4e-15  Score=160.78  Aligned_cols=119  Identities=25%  Similarity=0.497  Sum_probs=106.1

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCC
Q 008305          441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFG  520 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~  520 (570)
                      ...|.|.|+|++|+||+..+..|.+||||+++++  ..+++|+++++|.||.|||+|.|.+.......|.|+|||++..+
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~--~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~  461 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMG--SQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFS  461 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET--TEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSS
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEEC--CeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC
Confidence            4568999999999999999999999999999994  47899999999999999999999998777788999999999987


Q ss_pred             C-ceeEEEEEeccccccCce----EEEEEEecCCCCeEEEEEEEEE
Q 008305          521 K-DKMGKCIMTLTRVMMEGE----IQDSFHIDGTKSGKLFLNLKWT  561 (570)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~~----~~~w~~L~~~~~G~i~l~~~~~  561 (570)
                      + |+||++.+++.++..+..    ...|++|.+..+|+|++++++.
T Consensus       462 ~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          462 PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             CCCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence            5 799999999999986543    6799999999999999988764

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.62  E-value=6.4e-15  Score=133.20  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=86.5

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeC-CCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC
Q 008305          262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTIN-NELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP  340 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~  340 (570)
                      +.|.|.|+|++|+++.   ..|.+||||+++ .    +..+|+++. ++.||+|||+|.|.+.+.. ..|.|+|||+| .
T Consensus        12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~----~~~kt~~~~~~t~nP~WnE~f~f~v~~~~-~~L~~~V~D~d-~   81 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V----QNVESTTIAVRGSQPSWEQDFMFEINRLD-LGLTVEVWNKG-L   81 (167)
T ss_dssp             CCCEEEEEEEEEECSS---CGGGCEEEEEEE-E----TTEEEECCCEESSSCEEEEEEEEECCCTT-SEEEEEEEECC-S
T ss_pred             ceEEEEEEEEEEECCC---CCCCCCeEEEEE-e----cceEEEEecCCCCCCCCCCEEEEEeeCCC-CEEEEEEEECC-C
Confidence            5789999999999884   257899999999 3    234566654 6999999999999998654 57999999999 7


Q ss_pred             CCCCceEEEEEEEccccCCCe------eeEEEEEeeccccc--cCCCcceeEEEEEEEEE
Q 008305          341 MLAPEIIGIAQIALKELEPGK------VKDVWLKLVKDVKV--QRDTKNRGQVHLELLYC  392 (570)
Q Consensus       341 ~~~d~~lG~~~i~l~~l~~~~------~~~~w~~L~~~~~~--~~~~~~~G~l~l~l~~~  392 (570)
                       ++|++||++.++|+++....      -...|+.+....+.  .......|.+++++++.
T Consensus        82 -~~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e  140 (167)
T 2cjs_A           82 -IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE  140 (167)
T ss_dssp             -SCCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred             -CCCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence             78999999999999986432      12234443311100  00112345677888775

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.59  E-value=2.1e-14  Score=122.58  Aligned_cols=114  Identities=18%  Similarity=0.286  Sum_probs=98.7

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccC-CCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCCC
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAH-DTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTFG  520 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~~  520 (570)
                      -.|+|.|.+|.||+     |.+|||+++.+.  ..++||+++. ++.||+|||.|+|++..+  ..+.|.|.|+|++..+
T Consensus        21 msL~V~l~~a~~Lp-----g~~Dp~akv~FR--g~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~   93 (144)
T 3l9b_A           21 MALIVHLKTVSELR-----GRADRIAKVTFR--GQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVF   93 (144)
T ss_dssp             EEEEEEEEEEESCC-----SCEEEEEEEEET--TEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTS
T ss_pred             EEEEEEEEEecCCC-----CCCCCeEEEEEe--ccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcccc
Confidence            46999999999998     578999999994  4889999998 699999999999999644  5678999999999987


Q ss_pred             C-ceeEEEEEeccccccCceEEEEEEecCCC----CeEEEEEEEEEecC
Q 008305          521 K-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK----SGKLFLNLKWTPQL  564 (570)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~----~G~i~l~~~~~p~~  564 (570)
                      + ++||++.++|.++...+...-+-+|.+.+    .+.|.++++|.|.+
T Consensus        94 ~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~  142 (144)
T 3l9b_A           94 SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAAD  142 (144)
T ss_dssp             CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEETT
T ss_pred             CCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCCC
Confidence            7 59999999999999888877677775432    48999999999965

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.57  E-value=3.4e-15  Score=163.51  Aligned_cols=111  Identities=26%  Similarity=0.536  Sum_probs=100.6

Q ss_pred             ccCCceEEEEEEEEecCCCC---CCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTN---KDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVF  335 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~---~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~  335 (570)
                      +..+.|.|+|+|++|++|+.   .|..|.+||||++++.+...++++|+++++++||+|||+|.|.+.....+.|.|+||
T Consensus        13 e~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~   92 (749)
T 1cjy_A           13 EHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLM   92 (749)
T ss_dssp             CCCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEE
T ss_pred             cCCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEE
Confidence            34689999999999999998   787899999999999865457899999999999999999999998777789999999


Q ss_pred             eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305          336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK  371 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  371 (570)
                      |+|.. + |++||++.+++.++..+...+.|++|.+
T Consensus        93 D~D~~-~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~  126 (749)
T 1cjy_A           93 DANYV-M-DETLGTATFTVSSMKVGEKKEVPFIFNQ  126 (749)
T ss_dssp             ECCSS-S-CEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred             ECCCC-C-CceeEEEEEEHHHcCCCCceEEEEecCC
Confidence            99999 7 9999999999999988887899999954

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.56  E-value=2.5e-14  Score=124.15  Aligned_cols=110  Identities=17%  Similarity=0.270  Sum_probs=81.9

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccC-CCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCC
Q 008305          442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAH-DTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFG  520 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~  520 (570)
                      ..+.|.|+|++|++++.   .|.+||||++. .   ...+|++++ ++.||.|||+|.|.+.+ ....|.|+|||++ .+
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~---~~~kt~~~~~~t~nP~WnE~f~f~v~~-~~~~L~~~V~D~d-~~   73 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V---QNVKSTTIAVRGSQPSWEQDFMFEINR-LDLGLTVEVWNKG-LI   73 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E---TTEEEECCCEESSSCEEEEEEEEEECC-CSSEEEEEEEECC-SS
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE-e---cCEEEeEecCCCCCceECCEEEEEEeC-CCCeEEEEEEECC-CC
Confidence            36899999999998853   67899999999 3   233455554 69999999999999975 4567999999999 65


Q ss_pred             C-ceeEEEEEeccccccCc--eEEEEEEec-------CCC-------CeEEEEEEEE
Q 008305          521 K-DKMGKCIMTLTRVMMEG--EIQDSFHID-------GTK-------SGKLFLNLKW  560 (570)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~--~~~~w~~L~-------~~~-------~G~i~l~~~~  560 (570)
                      + ++||++.++|+++....  ...+|.++.       +..       .+++.+.++|
T Consensus        74 ~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~  130 (131)
T 2cjt_A           74 WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  130 (131)
T ss_dssp             CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             CCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence            5 79999999999987544  222455442       222       3457777776

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.53  E-value=8.5e-14  Score=151.43  Aligned_cols=124  Identities=19%  Similarity=0.328  Sum_probs=103.1

Q ss_pred             CceEEEEEEEEecCCCCCCC--CCCCCcEEEEEEEeC--CCceEEeeeeCCC-CCCeeecEEEEEEecCCCCeEEEEEEe
Q 008305          262 PCGTLDVKLVQAKELTNKDL--IGKSDPFVVIFVRPL--RDRMKTSKTINNE-LNPIWNEHFEFTVEDASTQHLTVRVFD  336 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~--~g~~dpyv~v~l~~~--~~~~~~T~~~~~t-~nP~Wne~f~f~v~~~~~~~L~~~v~d  336 (570)
                      ..+.|.|+|++|++|+..+.  .+.+||||++.+.+.  ...+++|++++++ .||+|||+|.|.+..++...|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            57899999999999998873  688999999999632  2357899999887 999999999999987766789999999


Q ss_pred             CCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          337 DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       337 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                      +|.. ++|++||++.++|..|..+.   .|++|....   ...-..|.|.+.+.|.
T Consensus       575 ~D~~-~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~---g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          575 YDSS-SKNDFIGQSTIPWNSLKQGY---RHVHLLSKN---GDQHPSATLFVKISIQ  623 (624)
T ss_dssp             CCSS-SCCEEEEEEEEEGGGBCCEE---EEEEEECTT---SCEEEEEEEEEEEEEE
T ss_pred             cCCC-CCCceeEEEEEEHHHcCCCc---EEEeCCCCC---cCCCCceEEEEEEEEE
Confidence            9998 89999999999999998753   589986532   1222468888888774

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.53  E-value=1.1e-13  Score=147.31  Aligned_cols=115  Identities=20%  Similarity=0.235  Sum_probs=98.2

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeec-CCCcEEEEEEEECCCCC
Q 008305          442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVED-GQHEMLILDVYDHDTFG  520 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~-~~~~~L~i~V~d~~~~~  520 (570)
                      ..+.|.|+|++|+||+. |..|.+||||++++++  .++||+++++++||+|||.|.|.+.+ .....|.|+|||+|..+
T Consensus       392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~--~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~  468 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGG--QEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGW  468 (540)
T ss_dssp             TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETT--EEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSS
T ss_pred             cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECC--EeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCC
Confidence            36899999999999998 8899999999999963  67999999999999999999998643 35778999999999986


Q ss_pred             C-ceeEEEEEeccccccCceEEEEEEecCCCCeEEEEEEEEEecCCC
Q 008305          521 K-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWTPQLVL  566 (570)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~p~~~~  566 (570)
                      + |+||++.++|..    +....|++|+   .|.|+++++..-.+.+
T Consensus       469 ~dD~LG~~~~~L~~----g~~~~~~~l~---~G~l~~~~~~~c~p~l  508 (540)
T 3nsj_A          469 DDDLLGSCDRSPHS----GFHEVTCELN---HGRVKFSYHAKCLPHL  508 (540)
T ss_dssp             CCEEEEEEEECCCS----EEEEEEEECS---SSEEEEEEEEEECTTE
T ss_pred             CCCEEEEEEEEeeC----CcEEEEEEcC---CeEEEEEEEEEECCCC
Confidence            6 799999999973    4567888876   4899998887665544

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.48  E-value=3.3e-13  Score=121.94  Aligned_cols=114  Identities=16%  Similarity=0.230  Sum_probs=85.1

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccC-CCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAH-DTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK  521 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~  521 (570)
                      .+.|.|+|++|++++   ..|.+||||++. .   +..||++++ ++.||.|||+|.|.+.+ ....|.|+|||++...+
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~---~~~kt~~~~~~t~nP~WnE~f~f~v~~-~~~~L~~~V~D~d~~~d   84 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK-V---QNVESTTIAVRGSQPSWEQDFMFEINR-LDLGLTVEVWNKGLIWD   84 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEE-E---TTEEEECCCEESSSCEEEEEEEEECCC-TTSEEEEEEEECCSSCC
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEE-e---cceEEEEecCCCCCCCCCCEEEEEeeC-CCCEEEEEEEECCCCCC
Confidence            579999999999885   368899999999 3   234566665 68999999999999975 45679999999993344


Q ss_pred             ceeEEEEEeccccccCc-----e-EEEEEEec---CCC-------CeEEEEEEEEEecC
Q 008305          522 DKMGKCIMTLTRVMMEG-----E-IQDSFHID---GTK-------SGKLFLNLKWTPQL  564 (570)
Q Consensus       522 d~lG~~~i~l~~l~~~~-----~-~~~w~~L~---~~~-------~G~i~l~~~~~p~~  564 (570)
                      |+||++.++|.++....     . ...|+.+.   +..       .|+++++++|....
T Consensus        85 d~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~~  143 (167)
T 2cjs_A           85 TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELPL  143 (167)
T ss_dssp             EEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECCC
T ss_pred             ceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecCC
Confidence            79999999999987544     1 13445432   221       35578888886544

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.48  E-value=8.2e-14  Score=152.62  Aligned_cols=114  Identities=23%  Similarity=0.492  Sum_probs=99.7

Q ss_pred             ccceEEEEEEEEeecCCC---CCCCCCCCcEEEEEEeCC-CceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEEC
Q 008305          441 IVRGVLSITVIAAENLPK---VDLIGKADPFVVLQLKKA-GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDH  516 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~---~~~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~  516 (570)
                      ...+.|+|+|++|++|+.   .+..|.+||||++++.+. ..++||++++++.||+|||+|.|.+.......|.|+|||+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            346899999999999998   777889999999999642 3678999999999999999999999876677899999999


Q ss_pred             CCCCCceeEEEEEeccccccCceEEEEEEecCCCCeEEEE
Q 008305          517 DTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFL  556 (570)
Q Consensus       517 ~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l  556 (570)
                      +..++++||++.++|.++..+....+|++|.+.  +++.+
T Consensus        95 D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~~--~e~~l  132 (749)
T 1cjy_A           95 NYVMDETLGTATFTVSSMKVGEKKEVPFIFNQV--TEMVL  132 (749)
T ss_dssp             CSSSCEEEEEECCBSTTSCTTCCCCEEEEETTT--EEEEE
T ss_pred             CCCCCceeEEEEEEHHHcCCCCceEEEEecCCC--ceEee
Confidence            998866999999999999877777899999875  45544

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.47  E-value=6e-13  Score=144.78  Aligned_cols=118  Identities=23%  Similarity=0.387  Sum_probs=99.1

Q ss_pred             ccceEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeC---CCceEeCcccCCC-CCCeeeeEEEEEeecCCCcEEEEEEE
Q 008305          441 IVRGVLSITVIAAENLPKVDL--IGKADPFVVLQLKK---AGNRAKTRVAHDT-LNPVWNQTFDFVVEDGQHEMLILDVY  514 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~--~g~~dpyv~v~~~~---~~~~~kT~v~~~t-~nP~w~e~f~f~v~~~~~~~L~i~V~  514 (570)
                      ...+.|+|+|++|++|+..+.  .+.+||||+|.+.+   ...++||++++++ .||+|||+|.|.+..+....|.|+||
T Consensus       494 ~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~  573 (624)
T 1djx_A          494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE  573 (624)
T ss_dssp             CCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred             ccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEE
Confidence            357899999999999998873  68899999999964   2357899999997 99999999999998766678999999


Q ss_pred             ECCCCCC-ceeEEEEEeccccccCceEEEEEEecCCC-----CeEEEEEEEEE
Q 008305          515 DHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK-----SGKLFLNLKWT  561 (570)
Q Consensus       515 d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~~  561 (570)
                      |++..++ ++||++.++|.++..+   .+|++|.+..     .+.|.+++++.
T Consensus       574 D~D~~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          574 DYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             EcCCCCCCceeEEEEEEHHHcCCC---cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence            9998865 7999999999998653   3688996542     47788888775

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.43  E-value=1.1e-14  Score=154.49  Aligned_cols=125  Identities=16%  Similarity=0.297  Sum_probs=22.6

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCC---CCCeeecEEEEEEecCCCCeEEEEEEeC
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNE---LNPIWNEHFEFTVEDASTQHLTVRVFDD  337 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t---~nP~Wne~f~f~v~~~~~~~L~~~v~d~  337 (570)
                      +..|.|+|+|++|++|+++|     ||||+++++.  .+..||+++++|   +||+|||+|.|.+... .+.|.++|||.
T Consensus         8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~--~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~   79 (483)
T 3bxj_A            8 RVDNVLKLWIIEARELPPKK-----RYYCELCLDD--MLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRD   79 (483)
T ss_dssp             EEEECC----------------------------------------------------CCEECC----------------
T ss_pred             eeccEEEEEEEEcCCcCCCC-----CCeEEEEECC--eEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEec
Confidence            46789999999999998876     9999999972  345789999999   9999999999987543 47899999994


Q ss_pred             -C---CCCCCCceEEEEEEEccccCCCeeeEEEEEeecccccc-------------------CCCcceeEEEEEEEEEec
Q 008305          338 -E---GPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQ-------------------RDTKNRGQVHLELLYCPF  394 (570)
Q Consensus       338 -d---~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-------------------~~~~~~G~l~l~l~~~p~  394 (570)
                       |   .. ++|++||++.++++++..+...+.|++|.......                   +.....|.|++++.|.+.
T Consensus        80 ~d~~~~~-~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~  158 (483)
T 3bxj_A           80 SDKKRKK-DKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTM  158 (483)
T ss_dssp             ----------------------------CCEECC--------------------------------------CEEEEEEC
T ss_pred             CCccccC-CCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeee
Confidence             4   35 68999999999999999887889999996543210                   112356999999999864

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.37  E-value=5.2e-14  Score=149.29  Aligned_cols=119  Identities=18%  Similarity=0.224  Sum_probs=24.8

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCC---CCCeeeeEEEEEeecCCCcEEEEEEEEC-C
Q 008305          442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDT---LNPVWNQTFDFVVEDGQHEMLILDVYDH-D  517 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t---~nP~w~e~f~f~v~~~~~~~L~i~V~d~-~  517 (570)
                      ..+.|+|+|++|++|+.++     ||||++++++ ..+.||+++++|   .||+|||+|+|.+... ...|.|+|||. +
T Consensus         9 ~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~-~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~d   81 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK-----RYYCELCLDD-MLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDSD   81 (483)
T ss_dssp             EEECC---------------------------------------------------CCEECC------------------
T ss_pred             eccEEEEEEEEcCCcCCCC-----CCeEEEEECC-eEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecCC
Confidence            4688999999999999876     9999999964 446799999999   9999999999987533 57899999994 4


Q ss_pred             C---C-CCceeEEEEEeccccccCceEEEEEEecCC---------------------------CCeEEEEEEEEEecCCC
Q 008305          518 T---F-GKDKMGKCIMTLTRVMMEGEIQDSFHIDGT---------------------------KSGKLFLNLKWTPQLVL  566 (570)
Q Consensus       518 ~---~-~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~---------------------------~~G~i~l~~~~~p~~~~  566 (570)
                      .   . ++++||++.|+++++..+...++||+|.+.                           ..|.|+++++|.+..++
T Consensus        82 ~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~vl  161 (483)
T 3bxj_A           82 KKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSIL  161 (483)
T ss_dssp             -------------------------CCEECC--------------------------------------CEEEEEECCBC
T ss_pred             ccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeeeec
Confidence            2   3 347999999999999877778899999431                           25899999999988765


Q ss_pred             C
Q 008305          567 R  567 (570)
Q Consensus       567 ~  567 (570)
                      .
T Consensus       162 P  162 (483)
T 3bxj_A          162 P  162 (483)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.26  E-value=7.6e-12  Score=138.76  Aligned_cols=108  Identities=31%  Similarity=0.517  Sum_probs=94.5

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecCC-CCeEEEEEEeCCC
Q 008305          263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDAS-TQHLTVRVFDDEG  339 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~~-~~~L~~~v~d~d~  339 (570)
                      .+.|.|+|++|++|.+.|..|.+||||++++.+.+  ..+++|+++++++||.|||+|.|.+.... ...|.++|||+|.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            57899999999999999999999999999997543  35789999999999999999999986543 3469999999999


Q ss_pred             CCCCCceEEEEEEEccccCCCeeeEEEEEeecc
Q 008305          340 PMLAPEIIGIAQIALKELEPGKVKDVWLKLVKD  372 (570)
Q Consensus       340 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  372 (570)
                      . ++|++||++.+++.++.... .+.|+.+...
T Consensus       251 ~-~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~  281 (674)
T 3pfq_A          251 T-SRNDFMGSLSFGISELQKAG-VDGWFKLLSQ  281 (674)
T ss_dssp             S-SCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred             c-cccccccccccchhhhccCC-cccceeeccc
Confidence            9 99999999999999997655 5889999754

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.21  E-value=6.6e-11  Score=131.20  Aligned_cols=106  Identities=30%  Similarity=0.546  Sum_probs=91.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecC-CCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDG-QHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~V~d~~~  518 (570)
                      .+.|.|++.+|++|+..+..|.+||||++.+..   ...+++|++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            478999999999999999999999999999842   33578999999999999999999998643 34569999999998


Q ss_pred             CCC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305          519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT  549 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (570)
                      .++ |+||++.+++.++.... ..+|+.|.+.
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~  281 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ  281 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred             ccccccccccccchhhhccCC-cccceeeccc
Confidence            876 69999999999997654 4899998544

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.13  E-value=4.2e-10  Score=125.34  Aligned_cols=115  Identities=21%  Similarity=0.318  Sum_probs=89.6

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC---CceEEee-eeC-CCCCCeeec-EEEE-EEecCCCCeEEEEE
Q 008305          262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR---DRMKTSK-TIN-NELNPIWNE-HFEF-TVEDASTQHLTVRV  334 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~---~~~~~T~-~~~-~t~nP~Wne-~f~f-~v~~~~~~~L~~~v  334 (570)
                      ..|.|.|+|++|++|+.    +.+||||++.+.+.+   .++++|+ +++ ++.||+||| +|.| .+..++...|+|+|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46899999999999985    468999999996322   2357899 775 569999999 7999 78766666899999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      ||++     +++||++.+||..|..|   -.|++|....   ...-..+.|.+.+.+
T Consensus       752 ~D~d-----~d~iG~~~ipl~~L~~G---~r~v~L~~~~---g~~~~~~~Lfv~i~~  797 (799)
T 2zkm_X          752 MEEG-----NKFLGHRIIPINALNSG---YHHLCLHSES---NMPLTMPALFIFLEM  797 (799)
T ss_dssp             EETT-----TEEEEEEEEEGGGBCCE---EEEEEEECTT---CCEEEEEEEEEEEEE
T ss_pred             EEeC-----CCccceEeeehhhcCCC---cEEEeccCCC---CCCCCceEEEEEEEE
Confidence            9975     68999999999999875   3578886432   122245778887766

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.12  E-value=3.9e-10  Score=125.62  Aligned_cols=117  Identities=18%  Similarity=0.349  Sum_probs=91.6

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--C-ceEEeeeeCC-CCCCeeec-EEEEE-EecCCCCeEEEEEEe
Q 008305          263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--D-RMKTSKTINN-ELNPIWNE-HFEFT-VEDASTQHLTVRVFD  336 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~-~~~~T~~~~~-t~nP~Wne-~f~f~-v~~~~~~~L~~~v~d  336 (570)
                      ...|.|+|++|++|+..    .+||||+|.+.+.+  . .+++|+++.+ +.||+||| +|.|. +..++...|+|+|||
T Consensus       724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            34899999999999853    58999999998422  1 2478999865 69999999 69998 766666689999999


Q ss_pred             CCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305          337 DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPF  394 (570)
Q Consensus       337 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  394 (570)
                      +|     +++||++.+||..|..|-   .+++|.+..   ...-..|.|.+.+.+..+
T Consensus       800 ~d-----ddfiG~~~lpL~~L~~Gy---R~vpL~~~~---g~~l~~atLfv~i~~~~~  846 (885)
T 3ohm_B          800 EG-----GKFVGHRILPVSAIRSGY---HYVCLRNEA---NQPLCLPALLIYTEASDY  846 (885)
T ss_dssp             TT-----TEEEEEEEEETTTCCCEE---EEEEEECTT---SCEEEEEEEEEEEEEEEC
T ss_pred             CC-----ccEEeeEEEEHHHcCCCc---eEEEecCCC---CCccCceEEEEEEEEEec
Confidence            75     689999999999998763   457776432   122357899999998754

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.12  E-value=5e-10  Score=124.05  Aligned_cols=117  Identities=21%  Similarity=0.373  Sum_probs=91.5

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC----ceEEeeeeCC-CCCCeeecE-EEEE-EecCCCCeEEEEEE
Q 008305          263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD----RMKTSKTINN-ELNPIWNEH-FEFT-VEDASTQHLTVRVF  335 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~----~~~~T~~~~~-t~nP~Wne~-f~f~-v~~~~~~~L~~~v~  335 (570)
                      .+.|.|+|++|++|+..    .+||||++.+.+.+.    ++++|+++.+ +.||+|||+ |.|. +..++...|+|+||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            47899999999999753    589999999984221    4678998875 699999998 9998 76666678999999


Q ss_pred             eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305          336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPF  394 (570)
Q Consensus       336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  394 (570)
                      |++     +++||++.+||+.|..|-   .+++|.+..   ...-..+.|.+.+.+.-.
T Consensus       725 D~d-----ddfiG~~~ipL~~L~~Gy---R~vpL~~~~---g~~~~~atLfv~i~~~~~  772 (816)
T 3qr0_A          725 EEN-----GKFIGHRVMPLDGIKPGY---RHVPLRNES---NRPLGLASVFAHIVAKDY  772 (816)
T ss_dssp             ETT-----SCEEEEEEEESTTCCCEE---EEEEEECTT---SCEEEEEEEEEEEEEEEC
T ss_pred             ecC-----CCeeeEEEEEHHHcCCcc---eEEEEeCCC---CCCCCceEEEEEEEEEec
Confidence            974     689999999999998763   467886532   122345788888887643

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.08  E-value=8e-10  Score=123.14  Aligned_cols=111  Identities=23%  Similarity=0.370  Sum_probs=88.0

Q ss_pred             ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC----CceEeCc-ccCC-CCCCeeee-EEEE-EeecCCCcEEEEE
Q 008305          441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA----GNRAKTR-VAHD-TLNPVWNQ-TFDF-VVEDGQHEMLILD  512 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~----~~~~kT~-v~~~-t~nP~w~e-~f~f-~v~~~~~~~L~i~  512 (570)
                      ...+.|.|+|++|++|+.    +.+||||+|.+.+.    ..++||+ ++++ +.||+||| +|.| .+..+....|.|+
T Consensus       675 ~~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~  750 (799)
T 2zkm_X          675 VVATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVA  750 (799)
T ss_dssp             TTCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEE
T ss_pred             eeeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEE
Confidence            357899999999999985    46899999999541    1367999 8765 69999999 7999 8876666789999


Q ss_pred             EEECCCCCCceeEEEEEeccccccCceEEEEEEecCCC-----CeEEEEEEEEE
Q 008305          513 VYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTK-----SGKLFLNLKWT  561 (570)
Q Consensus       513 V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~~  561 (570)
                      |||++   +++||++.++++.+..+   .++++|.+..     .+.|.+.++++
T Consensus       751 V~D~d---~d~iG~~~ipl~~L~~G---~r~v~L~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          751 VMEEG---NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             EEETT---TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             EEEeC---CCccceEeeehhhcCCC---cEEEeccCCCCCCCCceEEEEEEEEE
Confidence            99986   68999999999998643   4578885532     36677777664

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.06  E-value=9.1e-10  Score=122.66  Aligned_cols=110  Identities=18%  Similarity=0.324  Sum_probs=88.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC--C--ceEeCcccCC-CCCCeeee-EEEEE-eecCCCcEEEEEEEE
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA--G--NRAKTRVAHD-TLNPVWNQ-TFDFV-VEDGQHEMLILDVYD  515 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~--~--~~~kT~v~~~-t~nP~w~e-~f~f~-v~~~~~~~L~i~V~d  515 (570)
                      ...|.|+|++|++|+..    .+||||+|.+.+.  .  .++||+++++ +.||+||| +|.|. +..+....|.|+|||
T Consensus       724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            45899999999999853    5899999999741  1  3579999986 59999999 69998 766666789999999


Q ss_pred             CCCCCCceeEEEEEeccccccCceEEEEEEecCCC-----CeEEEEEEEEEe
Q 008305          516 HDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTK-----SGKLFLNLKWTP  562 (570)
Q Consensus       516 ~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~~p  562 (570)
                      ++   +|+||++.++|..+..+   .++++|.+..     .|.|.+.+.+..
T Consensus       800 ~d---ddfiG~~~lpL~~L~~G---yR~vpL~~~~g~~l~~atLfv~i~~~~  845 (885)
T 3ohm_B          800 EG---GKFVGHRILPVSAIRSG---YHYVCLRNEANQPLCLPALLIYTEASD  845 (885)
T ss_dssp             TT---TEEEEEEEEETTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             CC---ccEEeeEEEEHHHcCCC---ceEEEecCCCCCccCceEEEEEEEEEe
Confidence            87   68999999999998643   3467885542     578888888874

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.03  E-value=1.5e-09  Score=120.17  Aligned_cols=110  Identities=16%  Similarity=0.302  Sum_probs=88.4

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---C--ceEeCcccCC-CCCCeeeeE-EEEE-eecCCCcEEEEEE
Q 008305          442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---G--NRAKTRVAHD-TLNPVWNQT-FDFV-VEDGQHEMLILDV  513 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~--~~~kT~v~~~-t~nP~w~e~-f~f~-v~~~~~~~L~i~V  513 (570)
                      ..+.|+|+|++|++|+..    .+||||+|.+.+.   .  .++||+++++ +.||+|||+ |.|. +..+....|.|+|
T Consensus       648 ~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V  723 (816)
T 3qr0_A          648 VAGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIV  723 (816)
T ss_dssp             CCEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEE
T ss_pred             cceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEE
Confidence            357899999999999853    5899999999641   1  4679999886 599999998 9998 7666667899999


Q ss_pred             EECCCCCCceeEEEEEeccccccCceEEEEEEecCCC-----CeEEEEEEEEE
Q 008305          514 YDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTK-----SGKLFLNLKWT  561 (570)
Q Consensus       514 ~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~~  561 (570)
                      ||++   +|+||++.++|+.+..+   .++++|.+..     .+.|.+.+..+
T Consensus       724 ~D~d---ddfiG~~~ipL~~L~~G---yR~vpL~~~~g~~~~~atLfv~i~~~  770 (816)
T 3qr0_A          724 SEEN---GKFIGHRVMPLDGIKPG---YRHVPLRNESNRPLGLASVFAHIVAK  770 (816)
T ss_dssp             EETT---SCEEEEEEEESTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             EecC---CCeeeEEEEEHHHcCCc---ceEEEEeCCCCCCCCceEEEEEEEEE
Confidence            9985   58999999999998653   3467886543     36777777765

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.02  E-value=4.9e-09  Score=86.74  Aligned_cols=113  Identities=12%  Similarity=0.243  Sum_probs=84.5

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC-CceEEe-eeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC
Q 008305          263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR-DRMKTS-KTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP  340 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~-~~~~~T-~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~  340 (570)
                      .+.|+|.+.++.--.-.......||||.+.+.... ....+| ..+++|..|+|||+|.-.+++  .+.|.+.|++..  
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a--   80 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA--   80 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEET--
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCC--
Confidence            45788888666532212222468999999997311 012244 667889999999999988875  568999999643  


Q ss_pred             CCCCceEEEEEEEccccC-----CCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          341 MLAPEIIGIAQIALKELE-----PGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       341 ~~~d~~lG~~~i~l~~l~-----~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                         .+++..|++++++|.     .+...+.|++|          ++.|+|++.+.|+
T Consensus        81 ---~~fvAn~tV~~edL~~~c~~~~g~~e~WvdL----------eP~Gkl~~~i~~~  124 (126)
T 1yrk_A           81 ---EEPVSEVTVGVSVLAERCKKNNGKAEFWLDL----------QPQAKVLMSVQYF  124 (126)
T ss_dssp             ---TEEEEEEEEEHHHHHHHHHTTTTEEEEEEEC----------BSSCEEEEEEEEE
T ss_pred             ---CCeeeEEEEEHHHHHhhhccCCCceEEEEec----------ccCcEEEEEEEEe
Confidence               389999999999997     45567999998          4689999999986

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.01  E-value=7.5e-09  Score=85.64  Aligned_cols=113  Identities=16%  Similarity=0.262  Sum_probs=86.7

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--ceEeC-cccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCC
Q 008305          442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG--NRAKT-RVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDT  518 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~--~~~kT-~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~  518 (570)
                      ....|+|...++.--+........||||.+.+....  ...+| .++++|..|.||++|.-.+.+  ...|.|.|++...
T Consensus         4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~   81 (126)
T 1yrk_A            4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE   81 (126)
T ss_dssp             CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT
T ss_pred             cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC
Confidence            357788888777643322333468999999985311  12254 667889999999999999875  5689999997554


Q ss_pred             CCCceeEEEEEecccccc-----CceEEEEEEecCCCCeEEEEEEEEE
Q 008305          519 FGKDKMGKCIMTLTRVMM-----EGEIQDSFHIDGTKSGKLFLNLKWT  561 (570)
Q Consensus       519 ~~~d~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~i~l~~~~~  561 (570)
                         ++++.++|++++|..     ++..+-|++|+.  +|+|++.++|.
T Consensus        82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP--~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP--QAKVLMSVQYF  124 (126)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--SCEEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEe
Confidence               899999999999993     356789999998  79999999885

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.92  E-value=6.4e-09  Score=87.16  Aligned_cols=114  Identities=15%  Similarity=0.303  Sum_probs=85.1

Q ss_pred             CceEEEEEEEEecCCCCCC-CCCCCCcEEEEEEEeCCC-ceEEe-eeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCC
Q 008305          262 PCGTLDVKLVQAKELTNKD-LIGKSDPFVVIFVRPLRD-RMKTS-KTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDE  338 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~-~~g~~dpyv~v~l~~~~~-~~~~T-~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d  338 (570)
                      ..+.|+|.+.++.--+-.. .....||||.+.+..... ...+| ..++.|..|+|||+|.-.+++  .+.|.+.|++..
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a   85 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKN   85 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSS
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCC
Confidence            4567888887765433221 123589999999973110 12455 556778999999999888775  568999999532


Q ss_pred             CCCCCCceEEEEEEEccccC-----CCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          339 GPMLAPEIIGIAQIALKELE-----PGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       339 ~~~~~d~~lG~~~i~l~~l~-----~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                           .+++..|++++++|.     .+...+.|++|          ++.|+|++.+.|+
T Consensus        86 -----~~fVAn~tV~~edL~~~ck~~~g~~e~WvdL----------eP~Gkl~v~i~~~  129 (138)
T 2enj_A           86 -----VDLISETTVELYSLAERCRKNNGKTEIWLEL----------KPQGRMLMNARYF  129 (138)
T ss_dssp             -----CSCCEEEEEESHHHHHHHHHTTTCEEEEEEC----------BSSCEEEEEEEEC
T ss_pred             -----CCeeeEEEEEHHHHHhhhccCCCceEEEEec----------ccCcEEEEEEEEE
Confidence                 389999999999997     44567999999          4689999999996

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.91  E-value=9.8e-09  Score=86.06  Aligned_cols=113  Identities=14%  Similarity=0.274  Sum_probs=87.2

Q ss_pred             cceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCC--CceEeC-cccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECC
Q 008305          442 VRGVLSITVIAAENLPKVD-LIGKADPFVVLQLKKA--GNRAKT-RVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHD  517 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~~--~~~~kT-~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~  517 (570)
                      ..+.|+|.+.+..--+... .....||||.|.+...  ....+| .++++|..|.||+.|.-.+.+  ...|.|.|++..
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a   85 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKN   85 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSS
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCC
Confidence            3577888887776544332 1235899999998631  012566 666789999999999998875  568999999654


Q ss_pred             CCCCceeEEEEEecccccc-----CceEEEEEEecCCCCeEEEEEEEEE
Q 008305          518 TFGKDKMGKCIMTLTRVMM-----EGEIQDSFHIDGTKSGKLFLNLKWT  561 (570)
Q Consensus       518 ~~~~d~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~i~l~~~~~  561 (570)
                      .   +++..++|++++|..     ++..+-|++|+.  +|+|++.++|.
T Consensus        86 ~---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP--~Gkl~v~i~~~  129 (138)
T 2enj_A           86 V---DLISETTVELYSLAERCRKNNGKTEIWLELKP--QGRMLMNARYF  129 (138)
T ss_dssp             C---SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS--SCEEEEEEEEC
T ss_pred             C---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEE
Confidence            3   899999999999993     346789999998  79999999995

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=92.56  E-value=1.8  Score=39.55  Aligned_cols=55  Identities=16%  Similarity=0.190  Sum_probs=38.9

Q ss_pred             eEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEeCCCCCC---CCceEEEEEEEc
Q 008305          300 MKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFDDEGPML---APEIIGIAQIAL  354 (570)
Q Consensus       300 ~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d~d~~~~---~d~~lG~~~i~l  354 (570)
                      .++|.+...+.+|.|+|++.+.+...  ....|.|++++......   ....+|.+.+||
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL  137 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKL  137 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEES
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEc
Confidence            57888889999999999999888543  44679999998654311   123556655554

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=92.24  E-value=1  Score=38.87  Aligned_cols=125  Identities=14%  Similarity=0.133  Sum_probs=86.7

Q ss_pred             CCceEEEEEEEEecCCCCC-CCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC-------CCCeEEE
Q 008305          261 KPCGTLDVKLVQAKELTNK-DLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA-------STQHLTV  332 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~-~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~-------~~~~L~~  332 (570)
                      +-.+.+.|+|.++.-=+.. ...+..+|+.-+.+.-..-+.+.|.+.. +.+|.+|-+-.|.|...       .+..+.+
T Consensus        15 ~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l   93 (156)
T 2yrb_A           15 RGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL   93 (156)
T ss_dssp             SSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred             CCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence            4578999999988632111 0123467887777775556677888776 78999999888888421       2346889


Q ss_pred             EEEeCCCCCCCCceEEEEEEEccccCCCee-eEEEEEeeccccccCCC--cceeEEEEEEEEEe
Q 008305          333 RVFDDEGPMLAPEIIGIAQIALKELEPGKV-KDVWLKLVKDVKVQRDT--KNRGQVHLELLYCP  393 (570)
Q Consensus       333 ~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~~--~~~G~l~l~l~~~p  393 (570)
                      +++.....  .-..+|.+.|++.++..... .....+|...     .+  ..-|.|.+.+++..
T Consensus        94 ELhqa~g~--~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~-----~g~~~~~G~LeywiRL~~  150 (156)
T 2yrb_A           94 EVHQAYST--EYETIAACQLKFHEILEKSGRIFCTASLIGT-----KGDIPNFGTVEYWFRLRV  150 (156)
T ss_dssp             EEEEECSS--CEEEEEEEEECCSHHHHCCSCEEEEEEECBS-----SSCCTTSEEEEEEEEEEE
T ss_pred             EEEEeeCC--CceEEEEEEEEhHHhhCcCCceEEEEEEEcC-----CCCcceEEEEEEEEEEec
Confidence            99887653  56799999999999974322 3344566432     23  47899999998863

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=89.39  E-value=7.4  Score=35.53  Aligned_cols=56  Identities=13%  Similarity=0.193  Sum_probs=43.0

Q ss_pred             ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCCC----C-ceeEEEEEeccc
Q 008305          478 NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTFG----K-DKMGKCIMTLTR  533 (570)
Q Consensus       478 ~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~~----~-d~lG~~~i~l~~  533 (570)
                      ..++|.|.+.+.+|.|+|++.+.+...  ....|.|+++......    . ..+|-+.++|-+
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            357888889999999999999988633  5578999998754321    1 378999999875

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=86.70  E-value=3.9  Score=35.19  Aligned_cols=119  Identities=14%  Similarity=0.203  Sum_probs=78.7

Q ss_pred             cceEEEEEEEEeecCCCCC--CCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC-------CCcEEEE
Q 008305          442 VRGVLSITVIAAENLPKVD--LIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG-------QHEMLIL  511 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~--~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-------~~~~L~i  511 (570)
                      ..+.+.++|.++. +.+.-  ..+..+|+.-+.+.- .-..+.|.++. ..+|.+|.+-+|.+...       ....+.+
T Consensus        16 gEnlfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l   93 (156)
T 2yrb_A           16 GENLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL   93 (156)
T ss_dssp             SCEEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred             CCcEEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence            4578999999886 22110  012345655444432 23456777765 78999999988888521       2346889


Q ss_pred             EEEECCCCCCceeEEEEEeccccccCc-eEEEEEEecC-----CCCeEEEEEEEEEe
Q 008305          512 DVYDHDTFGKDKMGKCIMTLTRVMMEG-EIQDSFHIDG-----TKSGKLFLNLKWTP  562 (570)
Q Consensus       512 ~V~d~~~~~~d~lG~~~i~l~~l~~~~-~~~~w~~L~~-----~~~G~i~l~~~~~p  562 (570)
                      ++.......-+.||.+.|+|.+++... ......+|.+     ..-|.+.+.++++.
T Consensus        94 ELhqa~g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~~  150 (156)
T 2yrb_A           94 EVHQAYSTEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRV  150 (156)
T ss_dssp             EEEEECSSCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEEE
T ss_pred             EEEEeeCCCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEec
Confidence            888864322258999999999999554 3555667743     34689999888874

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=86.32  E-value=4.2  Score=45.85  Aligned_cols=90  Identities=14%  Similarity=0.155  Sum_probs=62.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCc----eEeCcccCCCCCCeeeeEEEEEee---cCCCcEEEEEEEE
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN----RAKTRVAHDTLNPVWNQTFDFVVE---DGQHEMLILDVYD  515 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~v~~~t~nP~w~e~f~f~v~---~~~~~~L~i~V~d  515 (570)
                      ...+.|+|.++.++...   ...+-||++.+-.+.+    ...|..+....+|.|||-++|++.   -|..+.|.|.||+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            46899999999999754   3467788887743332    234554455778999999998874   3467899999999


Q ss_pred             CCCC--C----------C-ceeEEEEEeccccc
Q 008305          516 HDTF--G----------K-DKMGKCIMTLTRVM  535 (570)
Q Consensus       516 ~~~~--~----------~-d~lG~~~i~l~~l~  535 (570)
                      ....  +          . ..+|.+.++|-+-.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCTT
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECCc
Confidence            5321  1          1 38999999998743

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=80.68  E-value=10  Score=43.17  Aligned_cols=91  Identities=15%  Similarity=0.188  Sum_probs=63.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCc----eEeCcccCCCCCCeeeeEEEEEee--c-CCCcEEEEEEEE
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN----RAKTRVAHDTLNPVWNQTFDFVVE--D-GQHEMLILDVYD  515 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~V~d  515 (570)
                      ...+.|+|.++.++.... ....+-||++.+-.+.+    ..+|+.+ ...+|.|||-.+|.+.  + |..+.|.|+||+
T Consensus       354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~  431 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRV-PCSNPRWNEWLNYDIYIPDLPRAARLCLSICS  431 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCC-CTTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred             CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceecccc-CCCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence            468899999999886433 33467899988854332    2344433 3467889999888874  3 467899999998


Q ss_pred             CCCC--C--C-ceeEEEEEeccccc
Q 008305          516 HDTF--G--K-DKMGKCIMTLTRVM  535 (570)
Q Consensus       516 ~~~~--~--~-d~lG~~~i~l~~l~  535 (570)
                      ....  +  . ..||.++++|-+..
T Consensus       432 ~~~~~~~~~~~~~lg~~n~~lfd~~  456 (1091)
T 3hhm_A          432 VKGRKGAKEEHCPLAWGNINLFDYT  456 (1091)
T ss_dssp             CCCCC-------CCEEEEEESBCTT
T ss_pred             ecCccCcccccceeEEeeeeeEccC
Confidence            6542  1  2 37999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	570
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	3e-23
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-22
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	3e-21
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	8e-21
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	3e-19
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-16
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	4e-19
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	8e-17
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	6e-19
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	4e-13
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-18
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	7e-17
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-16
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-13
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-15
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-11
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	4e-15
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-11
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	4e-15
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	1e-10
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	5e-15
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	6e-12
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	4e-14
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	1e-12
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	5e-14
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-13
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	8e-14
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	1e-13
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	1e-13
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	4e-09
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	2e-13
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	7e-09
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	8e-13
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-12
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-12
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	3e-12
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	7e-09
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	1e-09
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	4e-08

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 93.7 bits (232), Expect = 3e-23
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 11/139 (7%)

Query: 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEF 320
            P GTL+V LV AK L + D +   DP+V +  R      K++        P WNE F F
Sbjct: 7   GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--QDQKSNVAEGMGTTPEWNETFIF 64

Query: 321 TVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEP-GKVKDVWLKLVKDVKVQRDT 379
           TV +  T  L  ++FD +      + +G A I L+ +   G +      +VK      D 
Sbjct: 65  TVSE-GTTELKAKIFDKDV-GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DE 116

Query: 380 KNRGQVHLELLYCPFGTES 398
           + +G++ + L + P G  S
Sbjct: 117 EYKGEIWVALSFKPSGPSS 135

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 92.1 bits (228), Expect = 1e-22
 Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVE 502
            G L + +++A+ L   D +   DP+V L  +   ++           P WN+TF F V 
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-QDQKSNVAEGMGTTPEWNETFIFTVS 67

Query: 503 DGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQDSFHI---DGTKSGKLFLNL 558
           +G  E+    ++D D   +D  +G+  + L  V +EG I  + +    D    G++++ L
Sbjct: 68  EGTTELKAK-IFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVAL 126

Query: 559 KWTPQ 563
            + P 
Sbjct: 127 SFKPS 131

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (216), Expect = 3e-21
 Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 13/133 (9%)

Query: 264 GTLDVKLVQAKELTN---KDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEF 320
               V +++A ++T     D++   DP+V +F+    D  K ++  NN++NP+WNE FEF
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 321 TVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTK 380
            ++      L + + D     +  E +G A   +  ++ G+ K+V            +  
Sbjct: 63  ILDPNQENVLEITLMDAN--YVMDETLGTATFTVSSMKVGEKKEVPFIF--------NQV 112

Query: 381 NRGQVHLELLYCP 393
               + + L    
Sbjct: 113 TEMVLEMSLEVAS 125

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.3 bits (213), Expect = 8e-21
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 446 LSITVIAAENLPKV---DLIGKADPFVVLQLKKAGNRAKT-RVAHDTLNPVWNQTFDFVV 501
            ++ V+ A  + K    D++   DP+V L +    +  K  R  ++ +NPVWN+TF+F++
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 502 EDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWT 561
           +  Q  +L + + D +    + +G    T++ + +  + +  F  +      L ++L+  
Sbjct: 65  DPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVA 124

Query: 562 P 562
            
Sbjct: 125 S 125

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.7 bits (201), Expect = 3e-19
 Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFD 498
           V   L +T++ A++LP  +     +P+V +     +   N+ +T+    TL P WNQTF 
Sbjct: 12  VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFI 71

Query: 499 FVV---EDGQHEMLILDVYDHDTFGKDK---MGKCIMTLTRVMMEGEIQ 541
           +      + +  ML + ++D     +++   +G+ ++ L   +++ E  
Sbjct: 72  YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 120

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (181), Expect = 2e-16
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFT 321
             L V ++ AK+L +++     +P+V I+  P R     + +KT+   L P WN+ F ++
Sbjct: 14  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73

Query: 322 V---EDASTQHLTVRVFD-DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
                +   + L + ++D         E +G   I L+          W KL
Sbjct: 74  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 124

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.7 bits (201), Expect = 4e-19
 Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 6/118 (5%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVV---LQLKKAGNRAKTRVAHDTLNPVWNQTFDF 499
           R VL + V  A+NL  +D  G +DP+V    +   K+ ++ KT+    +LNP WN+TF F
Sbjct: 14  REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 73

Query: 500 VVEDG-QHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLF 555
            +++  +   L ++++D D   ++  MG     ++ +  +  +   F +   + G+ F
Sbjct: 74  QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL-QKAGVDGWFKLLSQEEGEYF 130

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.1 bits (184), Expect = 8e-17
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFT 321
             L V +  AK L   D  G SDP+V + + P        KT  I   LNP WNE F F 
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 322 VEDAS-TQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
           ++++   + L+V ++D +      + +G     + EL+   V D W KL
Sbjct: 75  LKESDKDRRLSVEIWDWD-LTSRNDFMGSLSFGISELQKAGV-DGWFKL 121

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 6e-19
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 10/131 (7%)

Query: 259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHF 318
           ++K  G L VK+++A +L   D  GKSDPF ++ +   R +     T+   LNP WN+ F
Sbjct: 1   DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQT---HTVYKNLNPEWNKVF 57

Query: 319 EFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRD 378
            F ++D     L V VFD++G    P+ +G   I L  +  G+     LK         +
Sbjct: 58  TFPIKD-IHDVLEVTVFDEDG-DKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL-----E 110

Query: 379 TKNRGQVHLEL 389
              +G ++LE+
Sbjct: 111 QAFKGVIYLEM 121

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 4e-13
 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVED 503
           G+L + V+ A +L   D  GK+DPF +L+L    +R +T   +  LNP WN+ F F ++D
Sbjct: 6   GILQVKVLKAADLLAADFSGKSDPFCLLELGN--DRLQTHTVYKNLNPEWNKVFTFPIKD 63

Query: 504 GQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQ---DSFHIDGTKSGKLFLNLK 559
             H++L + V+D D       +GK  + L  +           +  ++    G ++L + 
Sbjct: 64  -IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 122

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.8 bits (196), Expect = 2e-18
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTV- 322
             L V ++QA EL   D+ G SDP+V +F+ P + +   +K     LNP++NE F F V 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 323 -EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
             +   + L + V+ D       +IIG  ++ +  ++ G V + W  L
Sbjct: 94  YSELGGKTLVMAVY-DFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.6 bits (185), Expect = 7e-17
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 425 EAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN-RAKTR 483
           E  +LGK+      D      L + +I A  LP +D+ G +DP+V + L      + +T+
Sbjct: 16  EEEKLGKLQYSLDYD-FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETK 74

Query: 484 VAHDTLNPVWNQTFDFVV--EDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEI 540
           V   TLNPV+N+ F F V   +   + L++ VYD D F K   +G+  + +  V      
Sbjct: 75  VHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT 134

Query: 541 QDSFHID 547
           ++   + 
Sbjct: 135 EEWRDLQ 141

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.7 bits (183), Expect = 1e-16
 Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLK---KAGNRAKTRVAHDTLNPVWNQTFDF 499
              L++ V+ A +LPK D+ G +DP+V + L    K  ++ KT V   T N V+N+ F F
Sbjct: 14  TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 73

Query: 500 VV--EDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMME 537
            +  E  +   +   V D +   +++ +G+ ++  T     
Sbjct: 74  DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSG 114

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.1 bits (158), Expect = 2e-13
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 5/111 (4%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFT 321
            TL V +++A+ L   D+ G SDP+V + +   + R+   KT       N ++NE F F 
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 322 VEDASTQHLTVRV-FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK 371
           +   S + ++V     D       E+IG   +       G     W ++  
Sbjct: 75  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEICD 123

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.5 bits (177), Expect = 1e-15
 Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 6/103 (5%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRA---KTRVAHDTLNPVWNQTFDF 499
            G L++ ++ A+NL K+D+ G +DP+V + L + G R    KT +  +TLNP +N++F F
Sbjct: 24  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83

Query: 500 VV--EDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGE 539
            V  E  Q   +++ V D+D  GK+  +GK  +       E  
Sbjct: 84  EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELR 126

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.0 bits (147), Expect = 1e-11
 Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFT 321
           G L V +++AK L   D+ G SDP+V I +     R+K  KT    N LNP +NE F F 
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 322 VEDASTQHLTVRV-FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQR--D 378
           V     Q + V V   D   +   + IG   +              +       + +   
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHT 144

Query: 379 TKNRGQVHLEL 389
            +   +V   L
Sbjct: 145 LQVEEEVDAML 155

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.2 bits (171), Expect = 4e-15
 Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 9/125 (7%)

Query: 446 LSITVIAAENLPKV--DLIGKADPFVVLQLKKAGNRAKTR----VAHDTLNPVWNQTFDF 499
           L + +I+ + LPKV  +     DP V++++   G    +R    + ++  NP W+  F+F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 500 VVEDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQDSFHIDGTK--SGKLFL 556
            V      ++   V D+D+  K+  +G+  +    +            +G +  S  LF+
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFV 125

Query: 557 NLKWT 561
            +   
Sbjct: 126 KISIQ 130

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.0 bits (142), Expect = 3e-11
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 265 TLDVKLVQAKEL--TNKDLIGKSDPFVVIFVRPLRD---RMKTSKTINNELNPIWNEHFE 319
            L V+++  ++L   NK+     DP V++ +  +       +T+   NN  NP W+  FE
Sbjct: 5   RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64

Query: 320 FTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
           F V       +   V  D       + IG + I    L+ G      + L
Sbjct: 65  FEVTVPDLALVRFMVE-DYDSSSKNDFIGQSTIPWNSLKQG---YRHVHL 110

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.6 bits (172), Expect = 4e-15
 Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 7/121 (5%)

Query: 424 AEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAK-- 481
           +E A+LG++           G+L++T+I A NL  +DL G +DP+V   L   G R K  
Sbjct: 1   SEKADLGELNFSLCYL-PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKR 59

Query: 482 -TRVAHDTLNPVWNQTFDFVV--EDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMME 537
            T +  +TLNP +N+   F V  E  ++  L + V D+D  G ++ +G C +        
Sbjct: 60  KTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 119

Query: 538 G 538
           G
Sbjct: 120 G 120

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 1e-10
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFT 321
           G L V +++A  L   DL G SDP+V   +     R+K  KT    N LNP +NE   F 
Sbjct: 20  GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79

Query: 322 VEDASTQHLTVRV-FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK 371
           V   S +++ + +   D   +   E+IG+ ++  +  +P   ++ W +++ 
Sbjct: 80  VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLA 129

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.9 bits (170), Expect = 5e-15
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDF 499
           +G L + +I   +L  +D  G +DPFV L L        + KT++   TLNP +N+ F +
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73

Query: 500 VV--EDGQHEMLILDVYDHDTFGKDKM 524
            +   D   + L + V+D+D    +  
Sbjct: 74  DIKHSDLAKKSLDISVWDYDIGKSNDY 100

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.0 bits (147), Expect = 6e-12
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFT 321
           G L V +++   L   D  G SDPFV ++++P         ++     LNP +NE F + 
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74

Query: 322 VEDASTQHLTVR-VFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKD 372
           ++ +     ++     D     + + IG  Q+ +     G+    W + +K+
Sbjct: 75  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKN 124

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 67.2 bits (163), Expect = 4e-14
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 15/131 (11%)

Query: 444 GVLSITVIAAENLPKVDL-----------IGKADPFVVLQLKKAGNRAKTRVAHDTLNPV 492
           G+L I +  A +L                    DP++ L +       +T     T +P 
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD-SRIGQTATKQKTNSPA 64

Query: 493 WNQTFDFVVEDGQHEMLILDVYDHDTFG-KDKMGKCIMTLTRVMMEGEIQDSFHIDGTKS 551
           W+  F   V +G+   L   V+     G  D +  C +    ++  G       ID    
Sbjct: 65  WHDEFVTDVCNGRKIELA--VFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPE 122

Query: 552 GKLFLNLKWTP 562
           GK+++ +  + 
Sbjct: 123 GKVYVIIDLSG 133

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 63.0 bits (152), Expect = 1e-12
 Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 28/143 (19%)

Query: 264 GTLDVKLVQAKELTNKDL-----------IGKSDPFVVIFVRPLRDRMKTSKTINNELNP 312
           G L +K+ +A  L                    DP++ + V     R+  + T     +P
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD--SRIGQTATKQKTNSP 63

Query: 313 IWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL--EPGKVKDVWLKLV 370
            W++ F   V +     L V      G     + +    I  +EL     +  + W+ L 
Sbjct: 64  AWHDEFVTDVCNGRKIELAVFHDAPIGYD---DFVANCTIQFEELLQNGSRHFEDWIDL- 119

Query: 371 KDVKVQRDTKNRGQVHLELLYCP 393
                    +  G+V++ +    
Sbjct: 120 ---------EPEGKVYVIIDLSG 133

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 5e-14
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 443 RGVLSITVIAAENLPKVDLIGK-ADPFVVLQLKKAGN-RAKTRVAHDTLNPVWNQTFDFV 500
           R    + +  A  LP +D     +DP++ + +      + KTRV   TL+P +++TF F 
Sbjct: 21  RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80

Query: 501 V---EDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRV 534
                  Q   L   +   D F +D  +G+ ++ L+ +
Sbjct: 81  GIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 3e-13
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 264 GTLDVKLVQAKELTNKDLIGK-SDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTV 322
               V + +A+ L   D     SDP++ + + P +     ++ +   L+P ++E F F  
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 323 ---EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVK-DVWLKLVK 371
                     L   +          +IIG   I L  +E  + K  +  +++ 
Sbjct: 82  IPYTQIQELALHFTIL-SFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.8 bits (162), Expect = 8e-14
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 15/120 (12%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR-----------MKTSKTINNELNP 312
           G L + ++QA+ L  +D  G SDPFV +++ P R +            + +K +   LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 313 IWNEHFEFTV---EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
            WN+   +     E    + L V V+ D     + + +G   I L           W  L
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVW-DYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.1 bits (160), Expect = 1e-13
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL------------KKAGNRAKTRVAHDTLN 490
            G L I ++ A NL   D  G +DPFV + L              A  + +T+    +LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 491 PVWNQTFDFVV---EDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQDSFHI 546
           P WNQT  +     E    + L + V+D+D F  +  +G+ ++ L+           + +
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

Query: 547 -DGTKS 551
            + T+S
Sbjct: 137 KEQTES 142

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 1e-13
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 5/108 (4%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMK-TSKTINNELNPIWNEHFEFTV 322
             L V  ++A      +  G  D +V   V      ++  +     +L+  W E     +
Sbjct: 26  AELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 323 EDASTQHLTVRV-FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369
            +      T+ +            + G  ++ L           W +L
Sbjct: 83  AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 4e-09
 Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 10/117 (8%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL--KKAGNRAKTRVAHDTLNPVWNQTFDFV 500
           +  L +T + A      +  G  D +V   +  +     A+T +    L+  W +     
Sbjct: 25  KAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP 81

Query: 501 V--EDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQDSFHID--GTKSG 552
           +  E+     L L +   D F +    G+  + L    +         +   G  SG
Sbjct: 82  LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPSSG 138

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.2 bits (158), Expect = 2e-13
 Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 14/128 (10%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRP--LRDRMKTSKTINNELNPIWNEHFEFTVE 323
           L +     +  + +     S PF  + ++     DR KT       + P W   F+  + 
Sbjct: 5   LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY 64

Query: 324 DASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRG 383
           +   + + + +       ++   +G++ +A +  +     + WL L          + + 
Sbjct: 65  E--GRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDL----------QPQA 112

Query: 384 QVHLELLY 391
           +V + + Y
Sbjct: 113 KVLMCVQY 120

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.1 bits (124), Expect = 7e-09
 Identities = 16/121 (13%), Positives = 43/121 (35%), Gaps = 11/121 (9%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLK---KAGNRAKTRVAHDTLNPVWNQTFDFVVE 502
           L I+  + E          + PF  +++K                T+ P W  TFD  + 
Sbjct: 5   LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY 64

Query: 503 DGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFH---IDGTKSGKLFLNLK 559
             +  ++ + +       +D M +  + ++ +    +  +      +D     K+ + ++
Sbjct: 65  --EGRVIQIVLMRAA---EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKVLMCVQ 119

Query: 560 W 560
           +
Sbjct: 120 Y 120

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.4 bits (153), Expect = 8e-13
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN-RAKTRVAHDTLNPVWNQTFDFVV 501
              L + ++ A +LP  D  G +DP+V + L      + +T+V   TLNP++N+TF F V
Sbjct: 17  SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 76

Query: 502 --EDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMMEGEIQDSFHIDGTKSG 552
              +     L   VYD D F +   +G+ ++     + E         D  + G
Sbjct: 77  PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG 130

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (153), Expect = 1e-12
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVE 502
           +  L ITVI+A+            P+V + +   G   KT   ++T +P W Q    +V 
Sbjct: 5   KSQLQITVISAKLKENKKNWFGPSPYVEVTVD--GQSKKTEKCNNTNSPKWKQPLTVIVT 62

Query: 503 DGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVM 535
                 L   V+ H T   D  +G   + +   +
Sbjct: 63  --PVSKLHFRVWSHQTLKSDVLLGTAALDIYETL 94

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 1e-12
 Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 10/129 (7%)

Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
             L + ++ AK   NK       P+V + V     +   ++  NN  +P W +     V 
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKK---TEKCNNTNSPKWKQPLTVIVT 62

Query: 324 DASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL---EPGKVKDVWLKLVKDVKVQRDTK 380
             S  H           + +  ++G A + + E       K+++V + L      +  T+
Sbjct: 63  PVSKLHFR---VWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLG-GDKEPTE 118

Query: 381 NRGQVHLEL 389
             G + + L
Sbjct: 119 TIGDLSICL 127

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.7 bits (149), Expect = 3e-12
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 12/130 (9%)

Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVED 503
            +L + V  A+     +   K + +V L   K  N   T +A     P W Q F F +  
Sbjct: 2   SLLCVGVKKAKFDGAQE---KFNTYVTL---KVQNVKSTTIAVRGSQPSWEQDFMFEINR 55

Query: 504 GQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDS--FHID---GTKSGKLFLNL 558
               + + +V++        +G   + L  +    E        +D        ++    
Sbjct: 56  LDLGLTV-EVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTK 114

Query: 559 KWTPQLVLRD 568
             T   +L D
Sbjct: 115 DPTFHRILLD 124

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.1 bits (124), Expect = 7e-09
 Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 18/134 (13%)

Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA 325
           L V + +AK    ++   K + +V +        +K++        P W + F F +   
Sbjct: 4   LCVGVKKAKFDGAQE---KFNTYVTLK----VQNVKSTTIAVRGSQPSWEQDFMFEINR- 55

Query: 326 STQHLTVRVFDDEGPMLAPEIIGIAQIALKEL--EPGKVKDVWLKLVKDVKVQRD----- 378
               LTV V++         ++G   I L+ +     +    WL L     +        
Sbjct: 56  LDLGLTVEVWNKGLIW--DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGT 113

Query: 379 -TKNRGQVHLELLY 391
                 ++ L+  +
Sbjct: 114 KDPTFHRILLDAHF 127

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 15/98 (15%)

Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLK------KAGNRAKTRVAHDTLNPVWNQT--F 497
           LSITVI+ + L +         +V ++L       K   R K   + +++NPVW +    
Sbjct: 3   LSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58

Query: 498 DFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVM 535
              +   +   L + V +        +G  I+ +  + 
Sbjct: 59  FEKILMPELASLRVAVMEEG---NKFLGHRIIPINALN 93

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 16/103 (15%)

Query: 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPL-----RDRMKTSKTINNELNPIWNEHFE 319
           TL + ++  + L+ +        +V + +  L     R          N +NP+W E   
Sbjct: 2   TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPF 57

Query: 320 FTVEDASTQHLTVR--VFDDEGPMLAPEIIGIAQIALKELEPG 360
              +    +  ++R  V ++       + +G   I +  L  G
Sbjct: 58  VFEKILMPELASLRVAVMEEGN-----KFLGHRIIPINALNSG 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	570
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.87
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.86
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.85
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.84
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.81
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.8
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.8
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.79
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.79
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.79
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.78
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.77
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.77
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.76
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.75
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.74
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.74
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.73
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.72
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.71
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.71
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.71
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.7
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.7
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.69
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.69
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.68
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.68
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.67
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.67
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.67
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.66
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.65
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.64
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.61
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.6
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.57
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.56
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.36
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.35
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	93.52
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	91.0

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=8.9e-22  Score=170.93  Aligned_cols=126  Identities=31%  Similarity=0.541  Sum_probs=108.6

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeC-CCCCCeeecEEEEEEecCCCCeEEEEEEeCC
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTIN-NELNPIWNEHFEFTVEDASTQHLTVRVFDDE  338 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d  338 (570)
                      ..|.|+|+|+|++|++|+..+..|.+||||+++++   .+..+|+++. ++.||+|||+|.|.+.+.. ..|.|+|||++
T Consensus         6 ~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~---~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~-~~L~v~V~d~d   81 (136)
T d1wfja_           6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFTVSEGT-TELKAKIFDKD   81 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS---SCEEECCCCTTCCSSCEEEEEEEEEEESSC-CEEEEEECCSS
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEe---eeeEEEEEEecCCCcEEEeeEEEEEEcCcc-ceEEEEEEEec
Confidence            46899999999999999999988999999999987   5667788775 6899999999999998654 57999999999


Q ss_pred             CCCCCCceEEEEEEEccccCC-CeeeEEEEEeeccccccCCCcceeEEEEEEEEEeccC
Q 008305          339 GPMLAPEIIGIAQIALKELEP-GKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGT  396 (570)
Q Consensus       339 ~~~~~d~~lG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~  396 (570)
                      .. ++|++||++.|+|.++.. +.....|+.+..      .++..|+|++++.|.|.+.
T Consensus        82 ~~-~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~------~~~~~G~i~l~l~~~p~~p  133 (136)
T d1wfja_          82 VG-TEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             SC-TTTCCSEEEEEESHHHHHHSEEEEEEEEEEE------TTEEEEEEEEEEEEEECCS
T ss_pred             CC-CCCCEEEEEEEEhHHhcccCCcCcEEEEecC------CCccCEEEEEEEEEEeCCC
Confidence            98 889999999999999854 455678998853      4577899999999998643

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.9e-22  Score=170.77  Aligned_cols=122  Identities=31%  Similarity=0.557  Sum_probs=106.5

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC
Q 008305          261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP  340 (570)
Q Consensus       261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~  340 (570)
                      +++|+|+|+|++|++|+.++..|.+||||+++++   +++++|++++++.||.|||+|.|.+.++. +.|.|+|||++..
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~-~~L~i~V~d~~~~   78 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELG---NDRLQTHTVYKNLNPEWNKVFTFPIKDIH-DVLEVTVFDEDGD   78 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET---TEEEECCCCSSCSSCCCCEEEEEEESCTT-CEEEEEEEEEETT
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcC---CeEEEEEeeCCceeEEEEEEEEEEEeccC-ceeEEEEEEccCC
Confidence            5799999999999999999999999999999996   67889999999999999999999998654 6899999999998


Q ss_pred             CCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305          341 MLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC  392 (570)
Q Consensus       341 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~  392 (570)
                       ++|++||++.++++++..+.  ..|+.|...   ...++.+|+|++++.|.
T Consensus        79 -~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~---~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          79 -KPPDFLGKVAIPLLSIRDGQ--PNCYVLKNK---DLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             -EEEEECCBCEEEGGGCCSSC--CEECCCBCS---CTTSCCSSEEEEEEEEE
T ss_pred             -cCcceEEEEEEEHHHCCCCC--ceEEEcccc---CCCCceeEEEEEEEEEE
Confidence             88999999999999997764  468777432   22456679999999885

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.3e-21  Score=164.96  Aligned_cols=121  Identities=24%  Similarity=0.479  Sum_probs=106.2

Q ss_pred             ceEEEEEEEEecCCCCC---CCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCC
Q 008305          263 CGTLDVKLVQAKELTNK---DLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEG  339 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~---~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~  339 (570)
                      .+.|+|+|++|+||+..   |..|.+||||++++++...++++|+++.++.||.|||+|.|.+.+.....|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            46899999999999874   345889999999998655677899999999999999999999988777889999999987


Q ss_pred             CCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305          340 PMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCP  393 (570)
Q Consensus       340 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  393 (570)
                      .  +|++||++.++|+++..+...+.|++|.        ....|++++++++.|
T Consensus        82 ~--~d~~lG~~~i~L~~l~~~~~~~~~~~L~--------~~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          82 V--MDETLGTATFTVSSMKVGEKKEVPFIFN--------QVTEMVLEMSLEVAS  125 (126)
T ss_dssp             S--CCEEEEEEEEEGGGSCTTCEEEEEEEET--------TTEEEEEEEEEECCC
T ss_pred             C--CCCeEEEEEEEHHHccCCCeEEEEEEcc--------CCCeEEEEEEEEEEe
Confidence            6  6899999999999999888899999993        345799999998764

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.3e-21  Score=163.19  Aligned_cols=120  Identities=22%  Similarity=0.449  Sum_probs=107.3

Q ss_pred             ceEEEEEEEEeecCCCCC---CCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVD---LIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~---~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~  518 (570)
                      ++.|+|+|++|+||+...   ..|.+||||++.+++ ...+++|++++++.||.|||+|.|.+.+.....|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            588999999999999743   457899999999964 3467899999999999999999999987777889999999998


Q ss_pred             CCCceeEEEEEeccccccCceEEEEEEecCCCCeEEEEEEEEEe
Q 008305          519 FGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWTP  562 (570)
Q Consensus       519 ~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~p  562 (570)
                      .++++||++.++|+++..+.....||+|.+...|+|++++++.|
T Consensus        82 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          82 VMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVAS  125 (126)
T ss_dssp             SCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCC
T ss_pred             CCCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEEe
Confidence            87789999999999998888889999999998999999998876

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.7e-20  Score=155.90  Aligned_cols=115  Identities=30%  Similarity=0.563  Sum_probs=100.3

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC
Q 008305          442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK  521 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~  521 (570)
                      ..|.|+|+|++|+||+..+..|.+||||+++++  ..+++|+++++|.||.|||.|.|.+.++ .+.|.|+|||++..++
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~--~~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~~   80 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELG--NDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDKP   80 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET--TEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcC--CeEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCCcC
Confidence            469999999999999999999999999999995  4788999999999999999999999764 5789999999988876


Q ss_pred             -ceeEEEEEeccccccCceEEEEEEecC-----CCCeEEEEEEEEE
Q 008305          522 -DKMGKCIMTLTRVMMEGEIQDSFHIDG-----TKSGKLFLNLKWT  561 (570)
Q Consensus       522 -d~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~~~~~  561 (570)
                       ++||++.++|+++..+.  .+||.|..     ..+|+|++++++.
T Consensus        81 d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          81 PDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             EEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             cceEEEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEEE
Confidence             69999999999986543  47887743     3479999999875

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=2.4e-19  Score=155.37  Aligned_cols=120  Identities=27%  Similarity=0.545  Sum_probs=102.6

Q ss_pred             cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccC-CCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCC
Q 008305          442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAH-DTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFG  520 (570)
Q Consensus       442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~  520 (570)
                      ..|.|+|+|++|++|+..+..|.+||||++++++  ..++|++++ ++.||.|||.|.|.+.+. ...|.|+|||++..+
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~--~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~~   84 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--QDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVGT   84 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS--CEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSCT
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee--eeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecCCC
Confidence            4699999999999999999999999999999854  567888876 589999999999999853 567999999999887


Q ss_pred             C-ceeEEEEEeccccccCce-EEEEEEec--CCCCeEEEEEEEEEecC
Q 008305          521 K-DKMGKCIMTLTRVMMEGE-IQDSFHID--GTKSGKLFLNLKWTPQL  564 (570)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~~-~~~w~~L~--~~~~G~i~l~~~~~p~~  564 (570)
                      + ++||++.|+|.++..... ...|+.+.  +...|+|+++++|.|..
T Consensus        85 ~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~~  132 (136)
T d1wfja_          85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             CCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeCC
Confidence            6 599999999999876554 46798884  34479999999999864

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.80  E-value=3.7e-19  Score=153.77  Aligned_cols=118  Identities=20%  Similarity=0.323  Sum_probs=100.0

Q ss_pred             CceEEEEEEEEecCCCCCC-----------CCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeE
Q 008305          262 PCGTLDVKLVQAKELTNKD-----------LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHL  330 (570)
Q Consensus       262 ~~G~L~V~V~~A~~L~~~~-----------~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L  330 (570)
                      -.|.|+|+|++|++|++.+           ..+.+||||+++++  +....+|+++.++.||.|||+|.|.+.+  .+.|
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~--~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l   79 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD--DSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKI   79 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred             EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeC--CCcCcEeeEEcCCCCccCccEEEEEEec--CCce
Confidence            3699999999999998743           34678999999996  2345689999999999999999999975  3689


Q ss_pred             EEEEEeCCCCCCCCceEEEEEEEccccCCC--eeeEEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305          331 TVRVFDDEGPMLAPEIIGIAQIALKELEPG--KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPF  394 (570)
Q Consensus       331 ~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~  394 (570)
                      .|+|||++.. ++|++||++.++|+++..+  ...+.|++|.          +.|++++.+.+.|.
T Consensus        80 ~i~V~d~~~~-~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------p~G~v~l~v~~~~~  134 (136)
T d1gmia_          80 ELAVFHDAPI-GYDDFVANCTIQFEELLQNGSRHFEDWIDLE----------PEGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEEECCSS-SSCEEEEEEEEEHHHHTSTTCSEEEEEEECB----------SSCEEEEEEEEEEE
T ss_pred             EEEEEEecCC-CCceeEEEEEEEHHHhhhcCCcceeEEEeCC----------CCcEEEEEEEEEeC
Confidence            9999999998 8899999999999999654  3467899983          46999999998763

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.2e-19  Score=154.68  Aligned_cols=109  Identities=29%  Similarity=0.522  Sum_probs=93.1

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecC-CCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDG-QHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~V~d~~~  518 (570)
                      .+.|.|+|++|+||+.++..|.+||||++++..   +..+++|+++++|.||.|||.|.|.+... ....|.|+|||++.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            478999999999999999999999999999843   34578999999999999999999998654 34579999999998


Q ss_pred             CCC-ceeEEEEEeccccccCceEEEEEEecCCCCe
Q 008305          519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKSG  552 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G  552 (570)
                      .++ ++||++.|+|+++..+ ..++||+|.+...|
T Consensus        94 ~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g  127 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEG  127 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHH
T ss_pred             CCCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCC
Confidence            876 5999999999998654 56899999765444

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.2e-18  Score=152.19  Aligned_cols=106  Identities=30%  Similarity=0.513  Sum_probs=93.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTF  519 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~  519 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++.. +..+++|++++++.||.|||+|.|.+...  ....|.|+|||++..
T Consensus        33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~  112 (143)
T d1rsya_          33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  112 (143)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCC
Confidence            478999999999999999889999999999853 34678999999999999999999988532  467899999999988


Q ss_pred             CC-ceeEEEEEeccccccCceEEEEEEecC
Q 008305          520 GK-DKMGKCIMTLTRVMMEGEIQDSFHIDG  548 (570)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~  548 (570)
                      ++ ++||++.|+|.++..+....+||+|+.
T Consensus       113 ~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_         113 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            76 599999999999987777889999975

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.79  E-value=1e-18  Score=150.99  Aligned_cols=118  Identities=19%  Similarity=0.420  Sum_probs=100.9

Q ss_pred             ccceEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEE
Q 008305          441 IVRGVLSITVIAAENLPKVD-----------LIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEML  509 (570)
Q Consensus       441 ~~~g~L~V~v~~a~~L~~~~-----------~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L  509 (570)
                      ..+|.|+|+|++|++|++.+           ..+.+||||+++++. ....+|++++++.||.|||.|.|.+.+  ...|
T Consensus         3 ~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~-~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l   79 (136)
T d1gmia_           3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD-SRIGQTATKQKTNSPAWHDEFVTDVCN--GRKI   79 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT-EEEEECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred             cEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCC-CcCcEeeEEcCCCCccCccEEEEEEec--CCce
Confidence            35799999999999998753           356789999999963 355789999999999999999999975  4689


Q ss_pred             EEEEEECCCCCC-ceeEEEEEeccccccCc--eEEEEEEecCCCCeEEEEEEEEEec
Q 008305          510 ILDVYDHDTFGK-DKMGKCIMTLTRVMMEG--EIQDSFHIDGTKSGKLFLNLKWTPQ  563 (570)
Q Consensus       510 ~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~--~~~~w~~L~~~~~G~i~l~~~~~p~  563 (570)
                      .|+|||++..++ ++||.+.|+|+++..+.  ....|++|++  +|+|+++++++|.
T Consensus        80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p--~G~v~l~v~~~~~  134 (136)
T d1gmia_          80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEEE
T ss_pred             EEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC--CcEEEEEEEEEeC
Confidence            999999998876 59999999999998664  4678999985  6999999999874

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=7.1e-19  Score=153.62  Aligned_cols=110  Identities=30%  Similarity=0.487  Sum_probs=98.6

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEeC
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFDD  337 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d~  337 (570)
                      ....+.|+|+|++|+||+.++..|.+||||++++.+.+.+.++|++++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus        30 ~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~  109 (143)
T d1rsya_          30 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDF  109 (143)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEEC
T ss_pred             eCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEc
Confidence            356789999999999999999889999999999987667788999999999999999999987532  456899999999


Q ss_pred             CCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      +.. +++++||++.++|+++..+...+.|++|.
T Consensus       110 d~~-~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  141 (143)
T d1rsya_         110 DRF-SKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             CSS-SCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             CCC-CCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence            998 88999999999999998888788999984

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-18  Score=150.03  Aligned_cols=122  Identities=23%  Similarity=0.307  Sum_probs=98.7

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCC
Q 008305          263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPML  342 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~  342 (570)
                      .+.|.|+|++|++++..+..+.+||||++.++   ++.++|++++++.||.|||.|.|.+.+  .+.|.|+|||++.+ +
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~-~   78 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTL-K   78 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSS-S
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEEC---CeEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCC-C
Confidence            47899999999999998878889999999997   678899999999999999999999874  46899999999998 8


Q ss_pred             CCceEEEEEEEccccCC---CeeeE--EEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305          343 APEIIGIAQIALKELEP---GKVKD--VWLKLVKDVKVQRDTKNRGQVHLELLYCP  393 (570)
Q Consensus       343 ~d~~lG~~~i~l~~l~~---~~~~~--~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  393 (570)
                      +|++||++.++|.++..   +....  .|+.+...   .......|+|.+.+.+..
T Consensus        79 ~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~---~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          79 SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD---KEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES---SCTTSEEEEEEEEEESEE
T ss_pred             CCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC---CCCceEEEEEEEEEeeEE
Confidence            99999999999998842   33333  34444322   335567899999887753

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=1.3e-18  Score=149.72  Aligned_cols=108  Identities=31%  Similarity=0.510  Sum_probs=94.0

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeC--CCceEEeeeeCCCCCCeeecEEEEEEecCC-CCeEEEEEEeCCC
Q 008305          263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPL--RDRMKTSKTINNELNPIWNEHFEFTVEDAS-TQHLTVRVFDDEG  339 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~-~~~L~~~v~d~d~  339 (570)
                      .+.|.|+|++|+||+.++..|.+||||++++.+.  +..+++|++++++.||+|||+|.|.+.... ...|.|+|||++.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            4789999999999999998899999999999643  234789999999999999999999986543 3579999999999


Q ss_pred             CCCCCceEEEEEEEccccCCCeeeEEEEEeecc
Q 008305          340 PMLAPEIIGIAQIALKELEPGKVKDVWLKLVKD  372 (570)
Q Consensus       340 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  372 (570)
                      . ++|++||++.++++++..+. .+.|++|.+.
T Consensus        94 ~-~~d~~iG~~~i~l~~l~~~~-~~~W~~L~~~  124 (132)
T d1a25a_          94 T-SRNDFMGSLSFGISELQKAG-VDGWFKLLSQ  124 (132)
T ss_dssp             S-SCCEEEEEEEEEHHHHTTCC-EEEEEECBCH
T ss_pred             C-CCCcEeEEEEEeHHHcCCCC-CCeEEECCCC
Confidence            8 89999999999999997654 5789999654

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.9e-18  Score=148.27  Aligned_cols=107  Identities=29%  Similarity=0.440  Sum_probs=88.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTF  519 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~  519 (570)
                      .+.|.|+|++|+||+..+..|.+||||++++.. +..+++|++++++.||.|||+|.|.+...  ....|.|+|||++..
T Consensus        17 ~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~   96 (130)
T d1dqva1          17 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF   96 (130)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred             CCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCC
Confidence            589999999999999999899999999999853 34578999999999999999999998533  456799999999987


Q ss_pred             CC-ceeEEEEEeccccccCc--eEEEEEEecCC
Q 008305          520 GK-DKMGKCIMTLTRVMMEG--EIQDSFHIDGT  549 (570)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~--~~~~w~~L~~~  549 (570)
                      ++ ++||++.|++.......  ....||+|...
T Consensus        97 ~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~  129 (130)
T d1dqva1          97 SRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  129 (130)
T ss_dssp             SCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             CCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence            66 69999999865443322  34579999764

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.3e-18  Score=151.84  Aligned_cols=108  Identities=27%  Similarity=0.409  Sum_probs=91.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC------------CceEeCcccCCCCCCeeeeEEEEEee---cCCCc
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA------------GNRAKTRVAHDTLNPVWNQTFDFVVE---DGQHE  507 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~------------~~~~kT~v~~~t~nP~w~e~f~f~v~---~~~~~  507 (570)
                      .|.|.|+|++|+||+..+..|.+||||++++...            ..++||++++++.||.|||.|.|..-   +....
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            3789999999999999999999999999998321            12368999999999999999999742   22567


Q ss_pred             EEEEEEEECCCCCC-ceeEEEEEeccccccCceEEEEEEecCCC
Q 008305          508 MLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK  550 (570)
Q Consensus       508 ~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~  550 (570)
                      .|.|+|||++..++ ++||++.|+|.++.......+||+|+...
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            89999999998876 69999999999998877788999998753

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1.6e-18  Score=148.76  Aligned_cols=112  Identities=30%  Similarity=0.453  Sum_probs=93.7

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEe
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFD  336 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d  336 (570)
                      +.+..+.|.|+|++|+||+.++..|.+||||++++.+.+.+.++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        13 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d   92 (130)
T d1dqva1          13 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD   92 (130)
T ss_dssp             CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred             EECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEE
Confidence            3457889999999999999999889999999999976666789999999999999999999998543  45679999999


Q ss_pred             CCCCCCCCceEEEEEEEccc-cCC-CeeeEEEEEeec
Q 008305          337 DEGPMLAPEIIGIAQIALKE-LEP-GKVKDVWLKLVK  371 (570)
Q Consensus       337 ~d~~~~~d~~lG~~~i~l~~-l~~-~~~~~~w~~L~~  371 (570)
                      ++.. ++|++||++.|++.. +.. ......|++|.+
T Consensus        93 ~~~~-~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          93 FDRF-SRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             CCSS-SCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             cCCC-CCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            9998 899999999998653 332 233457999853

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1.9e-17  Score=142.05  Aligned_cols=121  Identities=20%  Similarity=0.347  Sum_probs=93.9

Q ss_pred             eEEEEEEEEecCCCCC--CCCCCCCcEEEEEEEeC--CCceEEeeeeCC-CCCCeeecEEEEEEecCCCCeEEEEEEeCC
Q 008305          264 GTLDVKLVQAKELTNK--DLIGKSDPFVVIFVRPL--RDRMKTSKTINN-ELNPIWNEHFEFTVEDASTQHLTVRVFDDE  338 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~--~~~g~~dpyv~v~l~~~--~~~~~~T~~~~~-t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d  338 (570)
                      ..|+|+|++|++|+..  +..+.+||||++++.+.  ..+.++|+++++ ++||.|||+|.|.+..+....|.|+|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            4799999999999754  45678999999999742  245678887754 579999999999987777778999999999


Q ss_pred             CCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305          339 GPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY  391 (570)
Q Consensus       339 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~  391 (570)
                      .. ++|++||++.++|+++..+   ..|++|....   ...-..++|.+++.+
T Consensus        84 ~~-~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~---g~~~~~~~L~v~i~~  129 (131)
T d1qasa2          84 SS-SKNDFIGQSTIPWNSLKQG---YRHVHLLSKN---GDQHPSATLFVKISI  129 (131)
T ss_dssp             TT-TCCEEEEEEEEEGGGBCCE---EEEEEEECTT---SCEEEEEEEEEEEEE
T ss_pred             CC-CCCcEEEEEEEEEeccCCC---CEEEECCCCC---cCCCCCCEEEEEEEE
Confidence            98 8899999999999999765   3588886432   122346677777765

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.8e-17  Score=141.07  Aligned_cols=104  Identities=23%  Similarity=0.478  Sum_probs=84.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEE-eec--CCCcEEEEEEEEC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFV-VED--GQHEMLILDVYDH  516 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~-v~~--~~~~~L~i~V~d~  516 (570)
                      .+.|.|+|++|+||+..+..+.+||||++++..   ...+++|++++++.||.|||+|.|. +..  .....|.|+|||.
T Consensus        13 ~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~   92 (125)
T d2bwqa1          13 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   92 (125)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEEC
Confidence            578999999999999998889999999999842   3356899999999999999999996 432  2355799999999


Q ss_pred             CCCC--C-ceeEEEEEeccccccCceEEEEEEec
Q 008305          517 DTFG--K-DKMGKCIMTLTRVMMEGEIQDSFHID  547 (570)
Q Consensus       517 ~~~~--~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (570)
                      +..+  + ++||++.++|+++..+.. .+||+|+
T Consensus        93 ~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~  125 (125)
T d2bwqa1          93 ARVREEESEFLGEILIELETALLDDE-PHWYKLQ  125 (125)
T ss_dssp             -------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred             CCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence            8763  2 489999999999876554 6799985

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=3.7e-17  Score=138.57  Aligned_cols=118  Identities=19%  Similarity=0.312  Sum_probs=92.2

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCC
Q 008305          264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLA  343 (570)
Q Consensus       264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~  343 (570)
                      +.|.|+|.+|++|.+++   +.||||+++++   +++.+|++++ +.||.|||+|.|.+.++. +.|.|+|||++..  .
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~---~~k~~T~~~k-~~nP~Wne~f~f~v~~~~-~~L~v~V~d~~~~--~   71 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ---NVKSTTIAVR-GSQPSWEQDFMFEINRLD-LGLTVEVWNKGLI--W   71 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEET---TEEEECCCEE-SSSCEEEEEEEEEECCCS-SEEEEEEEECCSS--C
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeC---CEEEEEEEec-CCCCeEEEEEEEeecccc-ceEEEEEEeCCCc--C
Confidence            68999999999999865   68999999996   6678888876 559999999999998764 6899999999876  6


Q ss_pred             CceEEEEEEEccccCCC--eeeEEEEEeeccccc------cCCCcceeEEEEEEEE
Q 008305          344 PEIIGIAQIALKELEPG--KVKDVWLKLVKDVKV------QRDTKNRGQVHLELLY  391 (570)
Q Consensus       344 d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~------~~~~~~~G~l~l~l~~  391 (570)
                      |++||++.|+|+++..+  .....|++|..+...      .........|.++++|
T Consensus        72 d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~  127 (128)
T d2cjta1          72 DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  127 (128)
T ss_dssp             EEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             CcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence            99999999999999643  345689999654321      1112234567777766

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.6e-17  Score=138.81  Aligned_cols=116  Identities=22%  Similarity=0.339  Sum_probs=94.3

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-  521 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-  521 (570)
                      .+.|.|+|++|++++..+..+.+||||++.+++  ..++|++++++.||.|||.|.|.+..  .+.|.|+|||++.+++ 
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d   80 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDG--QSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSD   80 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETT--EEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCC
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECC--eEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCC
Confidence            478999999999999988888999999999954  67899999999999999999999864  5789999999999877 


Q ss_pred             ceeEEEEEeccccccCc-----eEEEEEEecC-----CCCeEEEEEEEEEe
Q 008305          522 DKMGKCIMTLTRVMMEG-----EIQDSFHIDG-----TKSGKLFLNLKWTP  562 (570)
Q Consensus       522 d~lG~~~i~l~~l~~~~-----~~~~w~~L~~-----~~~G~i~l~~~~~p  562 (570)
                      ++||++.++|.++....     ....|+.|.+     ...|+|.+.+....
T Consensus        81 ~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          81 VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             EEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred             ceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEE
Confidence            59999999999986431     2344555532     23599998887654

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2e-18  Score=150.67  Aligned_cols=109  Identities=27%  Similarity=0.453  Sum_probs=92.8

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc-----------eEEeeeeCCCCCCeeecEEEEEEe---cCCCC
Q 008305          263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR-----------MKTSKTINNELNPIWNEHFEFTVE---DASTQ  328 (570)
Q Consensus       263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~-----------~~~T~~~~~t~nP~Wne~f~f~v~---~~~~~  328 (570)
                      .|.|.|+|++|+||+.++..|.+||||++++.+....           +++|++++++.||.|||+|.|...   +....
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            5899999999999999998999999999999533222           357888999999999999999742   23456


Q ss_pred             eEEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeecc
Q 008305          329 HLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKD  372 (570)
Q Consensus       329 ~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  372 (570)
                      .|.|+|||++.. ++|++||++.++|.++..+.....|++|.+.
T Consensus        97 ~L~i~V~d~d~~-~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~  139 (142)
T d1rh8a_          97 TLEVTVWDYDRF-SSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             EEEEEEEEECSS-SCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             EEEEEEEEecCC-CCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence            899999999998 8899999999999999877778899999654

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=1.4e-16  Score=137.83  Aligned_cols=92  Identities=30%  Similarity=0.499  Sum_probs=79.6

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+..+.+||||++++..   ...++||++++++.||.|||.|.|.+...  ....|.|+|||++
T Consensus        14 ~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~   93 (137)
T d2cm5a1          14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD   93 (137)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCC
Confidence            588999999999999988889999999999842   34568999999999999999999998633  4568999999999


Q ss_pred             CCCC-ceeEEEEEecccc
Q 008305          518 TFGK-DKMGKCIMTLTRV  534 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l  534 (570)
                      ..++ ++||++.+++.++
T Consensus        94 ~~~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          94 IGKSNDYIGGCQLGISAK  111 (137)
T ss_dssp             SSSCCEEEEEEEEETTCC
T ss_pred             CCCCCCEEEEEEeCcccc
Confidence            8766 5999999999864

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=1.9e-16  Score=135.72  Aligned_cols=115  Identities=23%  Similarity=0.411  Sum_probs=91.1

Q ss_pred             eEEEEEEEEeecCCCC--CCCCCCCcEEEEEEeC---CCceEeCcccCCC-CCCeeeeEEEEEeecCCCcEEEEEEEECC
Q 008305          444 GVLSITVIAAENLPKV--DLIGKADPFVVLQLKK---AGNRAKTRVAHDT-LNPVWNQTFDFVVEDGQHEMLILDVYDHD  517 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~--~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t-~nP~w~e~f~f~v~~~~~~~L~i~V~d~~  517 (570)
                      ..|+|+|++|++|+..  +..+.+||||++++.+   +..+++|++++++ .||.|||+|+|.+..+....|.|+|||++
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            5799999999999754  4567899999999964   3467899988765 79999999999997767788999999999


Q ss_pred             CCCC-ceeEEEEEeccccccCceEEEEEEecCCC-----CeEEEEEEEEE
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK-----SGKLFLNLKWT  561 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~~  561 (570)
                      ..++ ++||++.++|+++..+   .+|++|.+..     .++|.+++++.
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence            9876 5999999999998543   4688985442     45677777764

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=1.6e-16  Score=137.54  Aligned_cols=106  Identities=25%  Similarity=0.360  Sum_probs=80.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+..+.+||||++++....   .++||++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~   93 (138)
T d1w15a_          14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE   93 (138)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCC
Confidence            57899999999999999988999999999984322   356899999999999999999998533  3457999999999


Q ss_pred             CCCC-ceeEEEEEecccccc------------CceEEEEEEecC
Q 008305          518 TFGK-DKMGKCIMTLTRVMM------------EGEIQDSFHIDG  548 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~------------~~~~~~w~~L~~  548 (570)
                      ..++ ++||++.|++.+...            +....+|++|..
T Consensus        94 ~~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~~  137 (138)
T d1w15a_          94 RGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD  137 (138)
T ss_dssp             TTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CCCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEccc
Confidence            8866 699999999976421            234567887753

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=3.4e-16  Score=138.48  Aligned_cols=107  Identities=31%  Similarity=0.552  Sum_probs=88.8

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+..+.+||||++++....   ..++|++++++.||+|||+|.|.+...  ....|.|+|||.+
T Consensus        24 ~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~  103 (157)
T d1uowa_          24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  103 (157)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccC
Confidence            57999999999999998988999999999985432   346899999999999999999998644  3568999999999


Q ss_pred             CCCC-ceeEEEEEecccc----------cc--CceEEEEEEecCC
Q 008305          518 TFGK-DKMGKCIMTLTRV----------MM--EGEIQDSFHIDGT  549 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l----------~~--~~~~~~w~~L~~~  549 (570)
                      .+++ ++||++.|++...          ..  .....+||+|...
T Consensus       104 ~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~  148 (157)
T d1uowa_         104 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (157)
T ss_dssp             SSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             CCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence            9876 6999999999763          21  2346799999753

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2e-16  Score=136.88  Aligned_cols=105  Identities=15%  Similarity=0.196  Sum_probs=89.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC--CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA--GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDT  518 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~  518 (570)
                      .+.|.|+|++|+||+.   .|.+||||++++...  ...++|++++++.||.|||.|.|.+...  ....|.|+|||.+.
T Consensus        25 ~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~  101 (138)
T d1wfma_          25 KAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             TTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc
Confidence            4789999999999954   567899999999542  2457899999999999999999998643  45789999999998


Q ss_pred             CCC-ceeEEEEEeccccccCceEEEEEEecCCC
Q 008305          519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK  550 (570)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~  550 (570)
                      .++ ++||++.|+|.++.......+|++|....
T Consensus       102 ~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~  134 (138)
T d1wfma_         102 FSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             SCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             cccceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence            876 69999999999997766778999998653

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=2.2e-16  Score=133.75  Aligned_cols=110  Identities=16%  Similarity=0.295  Sum_probs=90.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCce
Q 008305          444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDK  523 (570)
Q Consensus       444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~  523 (570)
                      +.|.|+|.+|++|...+   ..||||++.++  +.+.+|.+++ +.||.|||.|.|.+.++ ...|.|+|||++..++++
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~--~~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~~d~~   74 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ--NVKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIWDTM   74 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEET--TEEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSSCEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeC--CEEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCcCCcc
Confidence            68999999999998855   57999999995  4788898876 56999999999999865 578999999999887689


Q ss_pred             eEEEEEeccccccCc--eEEEEEEecCC--------------CCeEEEEEEEE
Q 008305          524 MGKCIMTLTRVMMEG--EIQDSFHIDGT--------------KSGKLFLNLKW  560 (570)
Q Consensus       524 lG~~~i~l~~l~~~~--~~~~w~~L~~~--------------~~G~i~l~~~~  560 (570)
                      ||++.|+|+++....  ...+||+|...              ...+|.++++|
T Consensus        75 lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~  127 (128)
T d2cjta1          75 VGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  127 (128)
T ss_dssp             EEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             eEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence            999999999997543  35789999532              14567777665

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.4e-16  Score=133.15  Aligned_cols=105  Identities=26%  Similarity=0.479  Sum_probs=84.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCC-CCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEe-ecC--CCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGK-ADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVV-EDG--QHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~-~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v-~~~--~~~~L~i~V~d~~  517 (570)
                      .+.|.|+|++|+||+..+..+. +||||++++.. +..++||++++++.||.|||+|.|.. ...  ....|.|+|||.+
T Consensus        21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d  100 (138)
T d1ugka_          21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD  100 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECC
Confidence            5789999999999998876654 79999999953 34578999999999999999999973 321  3457999999999


Q ss_pred             CCCC-ceeEEEEEecccccc-CceEEEEEEec
Q 008305          518 TFGK-DKMGKCIMTLTRVMM-EGEIQDSFHID  547 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~-~~~~~~w~~L~  547 (570)
                      .+++ ++||++.++|+++.. +.....|..+.
T Consensus       101 ~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~  132 (138)
T d1ugka_         101 RFSRDDIIGEVLIPLSGIELSEGKMLMNREII  132 (138)
T ss_dssp             SSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred             CCCCCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence            8865 699999999999853 33555565553

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2e-16  Score=136.83  Aligned_cols=110  Identities=18%  Similarity=0.231  Sum_probs=89.9

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCC-CCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC---CCCeEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIG-KSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA---STQHLTVRV  334 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g-~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~---~~~~L~~~v  334 (570)
                      |....+.|.|+|++|+||+.++..+ .+||||++++.+.+.+.++|++++++.||.|||+|.|.....   ....|+|+|
T Consensus        17 Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V   96 (138)
T d1ugka_          17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI   96 (138)
T ss_dssp             EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred             EeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEE
Confidence            3356789999999999999887665 479999999987667788999999999999999999964222   245799999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCC-eeeEEEEEe
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPG-KVKDVWLKL  369 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L  369 (570)
                      ||++.+ ++|++||++.++|+++... .....|..+
T Consensus        97 ~d~d~~-~~~~~iG~~~i~L~~~~~~~~~~~~~~~~  131 (138)
T d1ugka_          97 LSFDRF-SRDDIIGEVLIPLSGIELSEGKMLMNREI  131 (138)
T ss_dssp             EEECSS-CCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred             EECCCC-CCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence            999998 8899999999999998543 334455554

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-16  Score=137.75  Aligned_cols=108  Identities=16%  Similarity=0.118  Sum_probs=92.1

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC-ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEe
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD-RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFD  336 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~-~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d  336 (570)
                      ....+.|.|+|++|++|..   .|.+||||++++.+..+ ..++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        22 ~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d   98 (138)
T d1wfma_          22 DCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRT   98 (138)
T ss_dssp             ETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEE
T ss_pred             CCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEee
Confidence            3567899999999999953   46799999999986432 357899999999999999999998543  45689999999


Q ss_pred             CCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305          337 DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK  371 (570)
Q Consensus       337 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  371 (570)
                      ++.. +++++||++.|+|.++......+.|++|.+
T Consensus        99 ~~~~-~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~  132 (138)
T d1wfma_          99 CDRF-SRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             CCSS-CTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             eccc-ccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence            9998 889999999999999987767789999964

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.9e-16  Score=134.65  Aligned_cols=109  Identities=26%  Similarity=0.429  Sum_probs=86.5

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEE-Eec--CCCCeEEEEE
Q 008305          260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFT-VED--ASTQHLTVRV  334 (570)
Q Consensus       260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~-v~~--~~~~~L~~~v  334 (570)
                      .+..+.|.|+|++|+||+..+..+.+||||++++.+..  ...++|++++++.||.|||+|.|. +..  .....|.|+|
T Consensus        10 ~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v   89 (125)
T d2bwqa1          10 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL   89 (125)
T ss_dssp             ETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEE
T ss_pred             ECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEE
Confidence            45678999999999999999888999999999997543  346899999999999999999996 332  2345799999


Q ss_pred             EeCCCC-CCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305          335 FDDEGP-MLAPEIIGIAQIALKELEPGKVKDVWLKL  369 (570)
Q Consensus       335 ~d~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  369 (570)
                      ||++.. .+.+++||++.++++++.... ...|++|
T Consensus        90 ~d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L  124 (125)
T d2bwqa1          90 WDQARVREEESEFLGEILIELETALLDD-EPHWYKL  124 (125)
T ss_dssp             EEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred             EECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeC
Confidence            999875 134569999999999997655 3579998

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=3.6e-16  Score=138.32  Aligned_cols=113  Identities=28%  Similarity=0.419  Sum_probs=93.5

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV  334 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v  334 (570)
                      |.+..|.|.|+|++|+||+..+..+.+||||++++.+.+.+  .++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus        20 Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v   99 (157)
T d1uowa_          20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV   99 (157)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEE
Confidence            34567899999999999999888899999999999865433  45899999999999999999998654  345799999


Q ss_pred             EeCCCCCCCCceEEEEEEEcccc------------CCCeeeEEEEEeecc
Q 008305          335 FDDEGPMLAPEIIGIAQIALKEL------------EPGKVKDVWLKLVKD  372 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l------------~~~~~~~~w~~L~~~  372 (570)
                      ||++.+ +++++||++.|++...            .+.....+|++|..+
T Consensus       100 ~d~~~~-~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~  148 (157)
T d1uowa_         100 LDYDKI-GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (157)
T ss_dssp             EECCSS-SCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             cccCCC-CCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence            999998 8999999999999753            123445789888543

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.3e-16  Score=134.77  Aligned_cols=98  Identities=24%  Similarity=0.339  Sum_probs=77.9

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV  334 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v  334 (570)
                      |.+..|.|.|+|++|+||+..+..+.+||||++++.+.+..  +++|++++++.||.|||+|.|.+...  ....|.|.|
T Consensus        10 Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v   89 (138)
T d1w15a_          10 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV   89 (138)
T ss_dssp             EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred             EcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEE
Confidence            34567899999999999999998889999999999754433  46789999999999999999987543  334699999


Q ss_pred             EeCCCCCCCCceEEEEEEEcccc
Q 008305          335 FDDEGPMLAPEIIGIAQIALKEL  357 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l  357 (570)
                      ||++.. +++++||++.+++.+.
T Consensus        90 ~d~~~~-~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          90 LDSERG-SRNEVIGRLVLGATAE  111 (138)
T ss_dssp             EECCTT-SCCEEEEEEEESTTCC
T ss_pred             EeCCCC-CCCCEEEEEEEcchhC
Confidence            999998 8899999999999764

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.1e-15  Score=132.10  Aligned_cols=98  Identities=24%  Similarity=0.406  Sum_probs=84.3

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV  334 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v  334 (570)
                      |.+..|.|.|+|++|+||+..+..+.+||||++++.+..  ..+++|++++++.||.|||+|.|.+...  ....|.|.|
T Consensus        10 Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v   89 (137)
T d2cm5a1          10 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV   89 (137)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEe
Confidence            345788999999999999998888999999999997432  3467899999999999999999998643  346799999


Q ss_pred             EeCCCCCCCCceEEEEEEEcccc
Q 008305          335 FDDEGPMLAPEIIGIAQIALKEL  357 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l  357 (570)
                      ||++.. +++++||++.+++.++
T Consensus        90 ~~~~~~-~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          90 WDYDIG-KSNDYIGGCQLGISAK  111 (137)
T ss_dssp             EECCSS-SCCEEEEEEEEETTCC
T ss_pred             eeCCCC-CCCCEEEEEEeCcccc
Confidence            999998 8999999999999865

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=3.1e-15  Score=126.00  Aligned_cols=109  Identities=16%  Similarity=0.298  Sum_probs=86.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCC
Q 008305          266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLA  343 (570)
Q Consensus       266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~  343 (570)
                      +.|.+.++..++.  ..+.+||||++++.+..  .+.++|+++++|+||+|||+|.|.+.+  .+.|.|.|||+|     
T Consensus         7 ~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d-----   77 (123)
T d1bdya_           7 ISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA-----   77 (123)
T ss_dssp             EEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET-----
T ss_pred             EEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc-----
Confidence            4444455555443  45889999999997432  234678999999999999999999975  468999999964     


Q ss_pred             CceEEEEEEEccccC-----CCeeeEEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305          344 PEIIGIAQIALKELE-----PGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCP  393 (570)
Q Consensus       344 d~~lG~~~i~l~~l~-----~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p  393 (570)
                      ++++|.+.+++.++.     .+...+.|++|          ...|+|++++.|++
T Consensus        78 d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L----------~~~Gkl~l~v~~f~  122 (123)
T d1bdya_          78 EDPMSEVTVGVSVLAERCKKNNGKAEFWLDL----------QPQAKVLMCVQYFL  122 (123)
T ss_dssp             TEEEEEEEEEHHHHHHHHHTTTTEEEEEEEC----------BSSCEEEEEEEEEE
T ss_pred             ccccCccEEehhheeeccccCCCcccEEEeC----------CCCEEEEEEEEEec
Confidence            579999999999884     45678899998          35799999999974

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=2.2e-16  Score=137.93  Aligned_cols=104  Identities=30%  Similarity=0.445  Sum_probs=84.1

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEECC
Q 008305          443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDHD  517 (570)
Q Consensus       443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~~  517 (570)
                      .|.|.|+|++|+||+..+..+.+||||++++...   ..+++|++++++.||.|||.|.|.+..  .....|.|+|||++
T Consensus        19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~   98 (145)
T d1dqva2          19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD   98 (145)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred             CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecC
Confidence            5899999999999999888899999999998532   235789999999999999999998753  24567999999999


Q ss_pred             CCCC-ceeEEEEEeccccccCceEEEEEEec
Q 008305          518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHID  547 (570)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (570)
                      ..++ ++||++.|++..+...+ ..+|++|.
T Consensus        99 ~~~~~~~iG~~~i~l~~~~~~~-~~~W~~l~  128 (145)
T d1dqva2          99 CIGHNEVIGVCRVGPEAADPHG-REHWAEML  128 (145)
T ss_dssp             SSSCCEEEEECCCSSCTTCHHH-HHHHHTSS
T ss_pred             CCCCCcEEEEEEECchHcCchh-hHHHHHHH
Confidence            8876 59999999998764322 24455543

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=9.5e-15  Score=122.94  Aligned_cols=108  Identities=15%  Similarity=0.286  Sum_probs=84.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCc
Q 008305          446 LSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKD  522 (570)
Q Consensus       446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d  522 (570)
                      +.|.++.+..+  ....+.+||||++++++.   ...++|+++++|+||+|||+|+|.+.+  ...|.|.|||++   ++
T Consensus         7 ~~~~~~~~~~~--~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---d~   79 (123)
T d1bdya_           7 ISFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---ED   79 (123)
T ss_dssp             EEEEEEECCTT--CCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET---TE
T ss_pred             EEEEEeecccC--CCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc---cc
Confidence            33444444443  345688999999999642   234578888999999999999999975  568999999976   47


Q ss_pred             eeEEEEEecccccc-----CceEEEEEEecCCCCeEEEEEEEEEe
Q 008305          523 KMGKCIMTLTRVMM-----EGEIQDSFHIDGTKSGKLFLNLKWTP  562 (570)
Q Consensus       523 ~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~i~l~~~~~p  562 (570)
                      ++|.+.+++.++..     +...+.|++|+  +.|+|+++++|.+
T Consensus        80 ~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl~l~v~~f~  122 (123)
T d1bdya_          80 PMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEEE
T ss_pred             ccCccEEehhheeeccccCCCcccEEEeCC--CCEEEEEEEEEec
Confidence            99999999999863     34668999997  4799999999975

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=2.9e-16  Score=137.08  Aligned_cols=110  Identities=27%  Similarity=0.467  Sum_probs=89.6

Q ss_pred             ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEE
Q 008305          259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRV  334 (570)
Q Consensus       259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v  334 (570)
                      |.+..|.|.|+|++|+||+..+..+.+||||++++.+.+..  +++|++++++.||.|||+|.|.+..  .....|.|.|
T Consensus        15 Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v   94 (145)
T d1dqva2          15 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAV   94 (145)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEE
T ss_pred             EcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEE
Confidence            44577999999999999999888899999999999754333  5789999999999999999998753  2446799999


Q ss_pred             EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305          335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV  370 (570)
Q Consensus       335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  370 (570)
                      ||++.. +++++||++.|++..+.... ...|+++.
T Consensus        95 ~d~~~~-~~~~~iG~~~i~l~~~~~~~-~~~W~~l~  128 (145)
T d1dqva2          95 VDYDCI-GHNEVIGVCRVGPEAADPHG-REHWAEML  128 (145)
T ss_dssp             EECCSS-SCCEEEEECCCSSCTTCHHH-HHHHHTSS
T ss_pred             EecCCC-CCCcEEEEEEECchHcCchh-hHHHHHHH
Confidence            999998 88999999999998764222 34565553

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.4e-12  Score=105.06  Aligned_cols=111  Identities=22%  Similarity=0.348  Sum_probs=78.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeC---CCceEEeee--eCCCCCCeeecE-EEE-EEecCCCCeEEEEEEeC
Q 008305          265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPL---RDRMKTSKT--INNELNPIWNEH-FEF-TVEDASTQHLTVRVFDD  337 (570)
Q Consensus       265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~---~~~~~~T~~--~~~t~nP~Wne~-f~f-~v~~~~~~~L~~~v~d~  337 (570)
                      +|.|+|++|++|+.+    +.||||++++-+.   ..++.+|++  ..++.||.|||+ |.| .+..++...|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999765    4799999999631   223344443  478899999976 444 34555556899999996


Q ss_pred             CCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEE
Q 008305          338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELL  390 (570)
Q Consensus       338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~  390 (570)
                      +     |++||++.+|++.+..|-   .+++|....   ...-..+.|.+.+.
T Consensus        78 d-----~~~lG~~~ipl~~l~~Gy---R~vpL~~~~---g~~l~~~~L~v~i~  119 (122)
T d2zkmx2          78 G-----NKFLGHRIIPINALNSGY---HHLCLHSES---NMPLTMPALFIFLE  119 (122)
T ss_dssp             T-----TEEEEEEEEEGGGBCCEE---EEEEEECTT---CCEEEEEEEEEEEE
T ss_pred             C-----CCEEEEEEEEcccCcCCc---eEEEccCCC---cCCCCCceEEEEEE
Confidence            4     689999999999998764   567775432   11123455555544

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.1e-11  Score=103.59  Aligned_cols=100  Identities=22%  Similarity=0.378  Sum_probs=73.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeC----CCceEeCcc--cCCCCCCeeeeE-EEEE-eecCCCcEEEEEEEEC
Q 008305          445 VLSITVIAAENLPKVDLIGKADPFVVLQLKK----AGNRAKTRV--AHDTLNPVWNQT-FDFV-VEDGQHEMLILDVYDH  516 (570)
Q Consensus       445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~----~~~~~kT~v--~~~t~nP~w~e~-f~f~-v~~~~~~~L~i~V~d~  516 (570)
                      .|.|+|++|++|+..    ..||||++++.+    ...+.+|++  ..++.||.|||. |.|. +..+....|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            589999999999864    379999999953    223444544  356899999976 4443 4445566899999997


Q ss_pred             CCCCCceeEEEEEeccccccCceEEEEEEecCCCCeEE
Q 008305          517 DTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKL  554 (570)
Q Consensus       517 ~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i  554 (570)
                      +   +++||++.++++.+..+   .++++|.+.....+
T Consensus        78 d---~~~lG~~~ipl~~l~~G---yR~vpL~~~~g~~l  109 (122)
T d2zkmx2          78 G---NKFLGHRIIPINALNSG---YHHLCLHSESNMPL  109 (122)
T ss_dssp             T---TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEE
T ss_pred             C---CCEEEEEEEEcccCcCC---ceEEEccCCCcCCC
Confidence            5   58999999999998543   46788876654333