Citrus Sinensis ID: 008311

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570
Protein Sequence
MAQWPGHDDSQQLIRRDRSMVSISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTDIDETDAQAHLEIEDNAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYSWDAKLVLALAAFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLNNLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTGMGHEFVISTSEAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLKALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGKT
Secondary Structure (PSIPRED)
cccccccccHHHHHHHcccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccHHHHcccHHHHHHHHHHEEEEcccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHHcccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccEEEEHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccEEEcccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHcccccEEEEEEcccccEEcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHcccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccHccccccccccccHHHcHccHHHHEEHHEEccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccEEEEHHHHcccEEEEEEccccccHHHHHHHHHHHHcccHccccccccEEEEEEEEccccccccHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHccccccEEEEEcccccEEcHcHHHHHHHHccccccccHHHHHHHHHHccccHHHHHccccHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHcccccHEEHHHccccccc
Coil and Loop (DISEMBL)
maqwpghddsqqlirrdrsmvsisddnMMMRQIQathapdgrevdvkpLFNLVEDILnratfqtdideTDAQAHLEIEDNAQQAGFLAMIDAISFTIDRISCEIACkalggsdahATTLSLFSMLSNYSWDAKLVLALAAFALYYGEFWLLAQIYSSNQLAKSMAILKQlpsimehtsgplksRFDTLNNLIKAMMGVTRCIVEfkdmpsnyitqdapefssamahipIAVYWTIRSVVACATQittltgmgheFVISTSEAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLKALIYAkddlqplvdgstkrrvnIEVLRRKNVLLLISDLDISQEELSILEQIYNEsrlhltrqeshyevvwipivdhfihwddptqKKFETLqssmpwytvyhptlidRAVIRYVKDVwhfknkpilvvldpqgrvvspnaLHMMWiwgsnafpftsLREEALWKEETWRLELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYvgkstkrdkcgeswqplqlKSLVTSGKT
Flexible Loop (DISEMBL)
maqwpghddsqqlirrdRSMVSISDDNMMMRQIQAthapdgrevdVKPLFNLVEDILNRATFQTDIDETDAQAHLEIEDNAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYSWDAKLVLALAAFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLNNLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTGMGHEFVISTSEAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLKALIYAKddlqplvdgstkrrvnievlrrkNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAarsvantariplemvyVGKStkrdkcgeswqplqlkslvtsgkt
Low Complexity Region (SEG)
MAQWPGHDDSQQLIRRDRSMVSISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTDIDETDAQAHLEIEDNAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYSWDaklvlalaafalYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLNNLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTGMGHEFVISTSEAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLKALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGKT
Disordered region (IsUnstruct)
*******************************************VDVKPLFNLVEDILNRATFQTDIDETDAQAHLEIEDNAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYSWDAKLVLALAAFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLNNLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTGMGHEFVISTSEAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLKALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKS************************
Disordered Region (DISOPRED)
***************************MMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQT****************AQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYSWDAKLVLALAAFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLNNLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTGMGHEFVISTSEAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLKALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQIYNE*********SHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPL****L******
Disordered Region (DISEMBL)
**********QQLIRRDRSMVSISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTDIDETDAQAHLEIEDNAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYSWDAKLVLALAAFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLNNLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTGMGHEFVISTSEAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLKALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGKT
Disordered Region (DISPRO)
*******************MVSISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTD*******AHLEIEDNAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYSWDAKLVLALAAFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLNNLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTGMGHEFVISTSEAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLKALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLV*****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQWPGHDDSQQLIRRDRSMVSISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTDIDETDAQAHLEIEDNAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYSWDAKLVLALAAFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLNNLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTGMGHEFVISTSEAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLKALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	570	2.2.26 [Sep-21-2011]
Q0JIL1	394	Probable nucleoredoxin 2	yes	no	0.178	0.258	0.283	1e-06
Q7XPE8	471	Probable nucleoredoxin 3	no	no	0.157	0.191	0.254	0.0002
Q8VZQ0	392	Probable nucleoredoxin 3	no	no	0.171	0.25	0.274	0.0003

>sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 11/113 (9%)

Query: 376 HLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDV 435
            L    + +EV+++          D  +  FE    +MPW  V      D    + + + 
Sbjct: 69  QLKEHGAGFEVIFVSC--------DENRPSFERFHRAMPWPAV---PFGDIGCKKRLSER 117

Query: 436 WHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRL 488
           +  +  P LVVL P G VV P+A+ ++  +G  AFPFTS R   L  +E  + 
Sbjct: 118 FQVEGIPRLVVLAPNGEVVQPDAVELVHRYGDRAFPFTSARVAELEADEQRKF 170

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 8

>sp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 3 OS=Oryza sativa subsp. japonica GN=Os04g0608600 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 16/106 (15%)

Query: 382 SHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNK 441
            +++V++I +        D  +++F+   S+MPW+ + +        ++ +  ++  K  
Sbjct: 239 GNFQVIFISM--------DRNEEEFQASLSAMPWFAIPYSD----TTVQELSRIFTIKGI 286

Query: 442 PILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLR----EEALWKE 483
           P L++L P G+V   +   ++  +G+ AFPFT  R    EE L KE
Sbjct: 287 PTLLILGPDGKVFKTDGRRIISKYGAMAFPFTESRAYELEEVLKKE 332

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 15/113 (13%)

Query: 364 SILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423
           S L  +YNE     T  +  +EV+ I          D   ++F    ++MPW  + +   
Sbjct: 223 SQLVDVYNELA---TTDKGSFEVILIST--------DRDSREFNINMTNMPWLAIPYEDR 271

Query: 424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLR 476
             + + R    +++ K  P LV++ P+ + V+ NA  M+ ++GS +FPFT  R
Sbjct: 272 TRQDLCR----IFNVKLIPALVIIGPEEKTVTTNAREMVSLYGSRSFPFTESR 320

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	570
224141277	716	predicted protein [Populus trichocarpa]	0.945	0.752	0.739	0.0
296087565	1487	unnamed protein product [Vitis vinifera]	0.947	0.363	0.738	0.0
359488786	780	PREDICTED: uncharacterized protein LOC10	0.938	0.685	0.739	0.0
359488672	825	PREDICTED: uncharacterized protein LOC10	0.947	0.654	0.721	0.0
359488792	752	PREDICTED: uncharacterized protein LOC10	0.947	0.718	0.714	0.0
296087570	659	unnamed protein product [Vitis vinifera]	0.928	0.802	0.721	0.0
225452266	688	PREDICTED: uncharacterized protein LOC10	0.912	0.755	0.720	0.0
296087569	694	unnamed protein product [Vitis vinifera]	0.926	0.760	0.717	0.0
296087568	664	unnamed protein product [Vitis vinifera]	0.926	0.795	0.711	0.0
225452256	688	PREDICTED: uncharacterized protein LOC10	0.912	0.755	0.711	0.0

>gi|224141277|ref|XP_002324001.1| predicted protein [Populus trichocarpa] gi|222867003|gb|EEF04134.1| predicted protein [Populus trichocarpa]

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/542 (73%), Positives = 473/542 (87%), Gaps = 3/542 (0%)

Query: 10  SQQLIRRDRSMVSISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTDIDET 69
           +QQLIR DRSM+++SDDN+MM+QI  THAPDGREVDVKPL +LVEDIL RAT QTD   T
Sbjct: 18  NQQLIRSDRSMITMSDDNVMMKQIVETHAPDGREVDVKPLLHLVEDILKRATLQTDTSLT 77

Query: 70  DAQAHLEIEDNAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYS 129
            +QAH E ED    A F  M+D++S+TIDRISCEIA K  GG+D HATT+ LF+ML++YS
Sbjct: 78  TSQAHAESEDKTNHANFAVMLDSLSYTIDRISCEIAYK--GGADGHATTVELFNMLASYS 135

Query: 130 WDAKLVLALAAFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLN 189
           WDAKLVL LAAFAL YGEFWLLAQIYSSNQLAKSMAILKQLP+I+EH SGPLK RFD LN
Sbjct: 136 WDAKLVLTLAAFALNYGEFWLLAQIYSSNQLAKSMAILKQLPNILEH-SGPLKPRFDALN 194

Query: 190 NLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLT 249
           NLIK MM VTRC+VEFKD+P  YI+ +    S+AMAH+P AVYWT+RSV+ACA QIT+LT
Sbjct: 195 NLIKVMMDVTRCVVEFKDLPPTYISHEVSALSAAMAHVPTAVYWTVRSVLACAAQITSLT 254

Query: 250 GMGHEFVISTSEAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSI 309
            MG+EF IST++AWELSTLAHKL NI E L+K +ATCY++I+EK++ EAYQML+ LF+ I
Sbjct: 255 TMGYEFSISTTKAWELSTLAHKLSNILEHLRKQLATCYQYIDEKRNVEAYQMLLNLFEMI 314

Query: 310 HIDNMKVLKALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQI 369
           HIDNMKVLKALIYAKDD+QPL+DGS KRRV+++VLRRKNVLLLIS LDIS +EL+ILEQI
Sbjct: 315 HIDNMKVLKALIYAKDDIQPLIDGSNKRRVHLDVLRRKNVLLLISGLDISNDELAILEQI 374

Query: 370 YNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVI 429
           YNES  H TR +S Y++VWIPI DH + W DP ++KFE+LQ+SMPWYTVYHP+LID+A I
Sbjct: 375 YNESSHHGTRLDSQYDLVWIPITDHSVQWTDPLKEKFESLQNSMPWYTVYHPSLIDKAAI 434

Query: 430 RYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLE 489
           R++++VWHF+NKPILVVLDPQG+VVSPNALHMMWIWGSNAFPFTSLREE+LW+EETWRLE
Sbjct: 435 RFIREVWHFRNKPILVVLDPQGKVVSPNALHMMWIWGSNAFPFTSLREESLWREETWRLE 494

Query: 490 LLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR 549
           LLVDGIDP++L+WIKE KYIF+YGGDDVEWVRKFT  AR+VA  ARIPLEMVYVGKS KR
Sbjct: 495 LLVDGIDPVILNWIKEEKYIFMYGGDDVEWVRKFTNTARAVAQAARIPLEMVYVGKSRKR 554

Query: 550 DK 551
           ++
Sbjct: 555 EQ 556

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087565|emb|CBI34821.3| unnamed protein product [Vitis vinifera]

 Score =  854 bits (2206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/543 (73%), Positives = 474/543 (87%), Gaps = 3/543 (0%)

Query: 11   QQLIRRDRSMVSISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTDIDETD 70
            QQ+I+ DRSM+++SDDN MM+QI ATHA DGR++DV+PL+ LVEDILNR+T   D   T 
Sbjct: 852  QQMIKGDRSMITMSDDNAMMKQIHATHAHDGRQIDVRPLYQLVEDILNRSTPGVDAIVTT 911

Query: 71   AQAHLE-IEDNAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYS 129
             +  +E +ED  Q AGF+AMI+A+SFTIDRISCEIACK   G DAHATTLS+F+ML++YS
Sbjct: 912  TETRVEPLEDRTQHAGFIAMIEALSFTIDRISCEIACKCSAGGDAHATTLSIFNMLASYS 971

Query: 130  WDAKLVLALAAFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLN 189
            WDAKLVL LAAFAL YGEFWLLAQIYSSNQLAKSMAILKQ+P ++EH S  LK RFD LN
Sbjct: 972  WDAKLVLTLAAFALNYGEFWLLAQIYSSNQLAKSMAILKQVPILLEH-SALLKPRFDALN 1030

Query: 190  NLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLT 249
            NLI+AMM VTRCI+EFK++P  YITQD P  S AMAHIP AVYWTIRS+VACATQI +LT
Sbjct: 1031 NLIRAMMDVTRCIIEFKELPPMYITQDVPALSIAMAHIPTAVYWTIRSIVACATQIASLT 1090

Query: 250  GMGHEFVISTS-EAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDS 308
             MGHE+ IST+ E WELSTLAHK+ +I + LKK +  CY++IEEK++ E YQML  LF S
Sbjct: 1091 SMGHEYAISTTNETWELSTLAHKINSILDHLKKQLFICYQYIEEKRNVETYQMLQNLFQS 1150

Query: 309  IHIDNMKVLKALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQ 368
            IHIDNMK+LKALIYAKDD+QPLVDGSTKRRV+I+VLRRKNVLLLISDLDISQ+ELSILEQ
Sbjct: 1151 IHIDNMKILKALIYAKDDMQPLVDGSTKRRVHIDVLRRKNVLLLISDLDISQDELSILEQ 1210

Query: 369  IYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAV 428
            IYNESR+H TR ES YEVVW+PIVDH + W DP QK+FE LQ++MPW++V+ PTLID+AV
Sbjct: 1211 IYNESRVHATRMESQYEVVWVPIVDHSLEWADPVQKQFENLQATMPWFSVHSPTLIDKAV 1270

Query: 429  IRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRL 488
            IR++K+VWHF+NKPILVVLDPQG+VVSPNA+HMMWIWGSNAFPFTSLREEALWKEETW+L
Sbjct: 1271 IRFIKEVWHFRNKPILVVLDPQGKVVSPNAIHMMWIWGSNAFPFTSLREEALWKEETWKL 1330

Query: 489  ELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK 548
            ELLVDG DP +L+WIKEGK+I+LYGG D+EW+RKFTT A++VA+ ARIPLEMVYVGKSTK
Sbjct: 1331 ELLVDGTDPTILNWIKEGKFIYLYGGTDMEWIRKFTTTAKAVASAARIPLEMVYVGKSTK 1390

Query: 549  RDK 551
            R++
Sbjct: 1391 REQ 1393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488786|ref|XP_002271518.2| PREDICTED: uncharacterized protein LOC100245845 [Vitis vinifera]

 Score =  849 bits (2193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/542 (73%), Positives = 473/542 (87%), Gaps = 7/542 (1%)

Query: 11  QQLIRRDRSMVSISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTDIDETD 70
           QQ+I+ DRSM+++SDDN MM+QI ATHA DGR++DV+PL+ LVEDILNR+T  T   ET 
Sbjct: 81  QQMIKGDRSMITMSDDNAMMKQIHATHAHDGRQIDVRPLYQLVEDILNRSTPGTT--ETR 138

Query: 71  AQAHLEIEDNAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYSW 130
            +    +ED  Q AGF+AMI+A+SFTIDRISCEIACK   G DAHATTLS+F+ML++YSW
Sbjct: 139 VEP---LEDRTQHAGFIAMIEALSFTIDRISCEIACKCSAGGDAHATTLSIFNMLASYSW 195

Query: 131 DAKLVLALAAFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLNN 190
           DAKLVL LAAFAL YGEFWLLAQIYSSNQLAKSMAILKQ+P ++EH S  LK RFD LNN
Sbjct: 196 DAKLVLTLAAFALNYGEFWLLAQIYSSNQLAKSMAILKQVPILLEH-SALLKPRFDALNN 254

Query: 191 LIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTG 250
           LI+AMM VTRCI+EFK++P  YITQD P  S AMAHIP AVYWTIRS+VACATQI +LT 
Sbjct: 255 LIRAMMDVTRCIIEFKELPPMYITQDVPALSIAMAHIPTAVYWTIRSIVACATQIASLTS 314

Query: 251 MGHEFVISTS-EAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSI 309
           MGHE+ IST+ E WELSTLAHK+ +I + LKK +  CY++IEEK++ E YQML  LF SI
Sbjct: 315 MGHEYAISTTNETWELSTLAHKINSILDHLKKQLFICYQYIEEKRNVETYQMLQNLFQSI 374

Query: 310 HIDNMKVLKALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQI 369
           HIDNMK+LKALIYAKDD+QPLVDGSTKRRV+I+VLRRKNVLLLISDLDISQ+ELSILEQI
Sbjct: 375 HIDNMKILKALIYAKDDMQPLVDGSTKRRVHIDVLRRKNVLLLISDLDISQDELSILEQI 434

Query: 370 YNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVI 429
           YNESR+H TR ES YEVVW+PIVDH + W DP QK+FE LQ++MPW++V+ PTLID+AVI
Sbjct: 435 YNESRVHATRMESQYEVVWVPIVDHSLEWADPVQKQFENLQATMPWFSVHSPTLIDKAVI 494

Query: 430 RYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLE 489
           R++K+VWHF+NKPILVVLDPQG+VVSPNA+HMMWIWGSNAFPFTSLREEALWKEETW+LE
Sbjct: 495 RFIKEVWHFRNKPILVVLDPQGKVVSPNAIHMMWIWGSNAFPFTSLREEALWKEETWKLE 554

Query: 490 LLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR 549
           LLVDG DP +L+WIKEGK+I+LYGG D+EW+RKFTT A++VA+ ARIPLEMVYVGKSTKR
Sbjct: 555 LLVDGTDPTILNWIKEGKFIYLYGGTDMEWIRKFTTTAKAVASAARIPLEMVYVGKSTKR 614

Query: 550 DK 551
           ++
Sbjct: 615 EQ 616

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488672|ref|XP_003633800.1| PREDICTED: uncharacterized protein LOC100244128 isoform 2 [Vitis vinifera]

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/543 (72%), Positives = 470/543 (86%), Gaps = 3/543 (0%)

Query: 11  QQLIRRDRSMVSISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTDIDETD 70
            QLIR DRSM+++SDDNMM++QI ATHAPDGRE DVKPLF LVEDILNRAT   D   + 
Sbjct: 120 HQLIRHDRSMITMSDDNMMVKQIHATHAPDGREFDVKPLFQLVEDILNRATPGVDPLISA 179

Query: 71  AQAHLEI-EDNAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYS 129
           AQ  +E  +D   QA F+A+++A+SFTIDRISCEIA K+LGG DAHATTLS+F +L++YS
Sbjct: 180 AQTRIETSDDRTNQASFIALLEALSFTIDRISCEIAYKSLGGGDAHATTLSIFDLLTSYS 239

Query: 130 WDAKLVLALAAFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLN 189
           W+AKLVL L+AFA+ YGEFWLLAQIYSSNQLAKSMAILKQ+P I+EH SG LK RFD LN
Sbjct: 240 WEAKLVLTLSAFAVNYGEFWLLAQIYSSNQLAKSMAILKQVPIILEH-SGQLKPRFDALN 298

Query: 190 NLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLT 249
           NLI+AM+ +TRCI+EFK++PS YI+QD P  ++AM HIP AVYWTIRSVVACATQITTLT
Sbjct: 299 NLIRAMVAITRCIIEFKELPSMYISQDVPALATAMTHIPTAVYWTIRSVVACATQITTLT 358

Query: 250 GMGHEFVIS-TSEAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDS 308
            MGHE+  S T+EAWELST+AHK+ +I + LKK +  CY++I++K + E +QML+ LF+S
Sbjct: 359 SMGHEYWTSATNEAWELSTMAHKINSILDLLKKQLTLCYQYIDDKWNAETFQMLLNLFES 418

Query: 309 IHIDNMKVLKALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQ 368
           IHIDNMK+L+ALI  KDD+QPL++GSTKRRVNI+VLRRKNVLLLIS L IS +ELSILEQ
Sbjct: 419 IHIDNMKILRALISPKDDVQPLLEGSTKRRVNIDVLRRKNVLLLISGLSISHDELSILEQ 478

Query: 369 IYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAV 428
           IYNESR+H TR ES YEVVWIP+VD  + W D  Q +FETLQ++MPWY+VY PTLID+AV
Sbjct: 479 IYNESRVHGTRMESQYEVVWIPVVDRSVMWTDAMQDRFETLQATMPWYSVYTPTLIDKAV 538

Query: 429 IRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRL 488
           IR++K+VWHF+NKPILVVLDPQGRVVSPNA+HMMWIWGS AFPFTSLREEALWKEETWRL
Sbjct: 539 IRFIKEVWHFRNKPILVVLDPQGRVVSPNAIHMMWIWGSTAFPFTSLREEALWKEETWRL 598

Query: 489 ELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK 548
           ELLVDGIDP VL+W+KEGK+I+LYGG D+EW+RKFTT A++VA+ ARIPLEMVYVGKS K
Sbjct: 599 ELLVDGIDPTVLNWVKEGKFIYLYGGTDMEWIRKFTTTAKAVASAARIPLEMVYVGKSNK 658

Query: 549 RDK 551
           R++
Sbjct: 659 REQ 661

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488792|ref|XP_003633822.1| PREDICTED: uncharacterized protein LOC100249294 [Vitis vinifera]

 Score =  824 bits (2129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/543 (71%), Positives = 471/543 (86%), Gaps = 3/543 (0%)

Query: 11  QQLIRRDRSMVSISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTDIDETD 70
           Q+LI+ DRSM+++SDDNMM++QI ATHAPDGRE DVKPLF LVEDILNRAT   D   + 
Sbjct: 47  QKLIKHDRSMITMSDDNMMVKQIHATHAPDGREFDVKPLFQLVEDILNRATPGVDPLISA 106

Query: 71  AQAHLEI-EDNAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYS 129
           AQ  +E  +D   QA F+A+++A+SFTIDRISCEIA K+LGG DAHA TLS+F++L++YS
Sbjct: 107 AQTRIETSDDRTNQASFIALLEALSFTIDRISCEIAYKSLGGGDAHAMTLSIFNLLTSYS 166

Query: 130 WDAKLVLALAAFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLN 189
           W+AKLVL L+AFA+ YGEFWLLAQI SSNQLAKSMAILKQ+P+I+EH SG LK RFD LN
Sbjct: 167 WEAKLVLTLSAFAVNYGEFWLLAQISSSNQLAKSMAILKQVPTILEH-SGQLKPRFDALN 225

Query: 190 NLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLT 249
           NLI+AM+ +TRCI+EFK++PS YI+QD P  ++AM HIP AVYWTIRSVVACATQITT T
Sbjct: 226 NLIRAMVAITRCIIEFKELPSMYISQDVPALATAMKHIPTAVYWTIRSVVACATQITTFT 285

Query: 250 GMGHEFVIS-TSEAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDS 308
            MGHE+ IS T+EAWELST+AHK+ +I + LKK +  CY++I++K++ E +QML+ LF+S
Sbjct: 286 SMGHEYWISATNEAWELSTMAHKINSILDLLKKQLTLCYQYIDDKRNAETFQMLLNLFES 345

Query: 309 IHIDNMKVLKALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQ 368
           IHIDNMK+L+ALI  KDD+QPL++GSTKRRVNI+VLRRKNVLLLIS L IS +ELSIL+Q
Sbjct: 346 IHIDNMKILRALISPKDDVQPLLEGSTKRRVNIDVLRRKNVLLLISGLSISHDELSILDQ 405

Query: 369 IYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAV 428
           IYNESR+H TR ES YEVVWIP+VD  + W D  Q +F TLQ++MPWY+VY PTLID+AV
Sbjct: 406 IYNESRVHGTRMESQYEVVWIPVVDRSVVWTDAMQDRFVTLQATMPWYSVYTPTLIDKAV 465

Query: 429 IRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRL 488
           IR++K+VWHF+NKPILVVLDPQGRVVSPNA+HMMWIWGS AFPFTSLREEALWKEETWRL
Sbjct: 466 IRFIKEVWHFRNKPILVVLDPQGRVVSPNAIHMMWIWGSTAFPFTSLREEALWKEETWRL 525

Query: 489 ELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK 548
           ELLVDGIDP VL+W+KEGK+I+LYGG D+EW+RKFTT AR+VA+ ARIPLEMVYVGKS K
Sbjct: 526 ELLVDGIDPTVLNWVKEGKFIYLYGGTDMEWIRKFTTTARAVASAARIPLEMVYVGKSNK 585

Query: 549 RDK 551
           R++
Sbjct: 586 REQ 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087570|emb|CBI34826.3| unnamed protein product [Vitis vinifera]

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/535 (72%), Positives = 461/535 (86%), Gaps = 6/535 (1%)

Query: 23  ISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTDIDETDAQAHLEI-EDNA 81
           +SDDNMM++QI ATHAPDGRE DVKPLF LVEDILNRAT   D   + AQ  +E  +D  
Sbjct: 1   MSDDNMMVKQIHATHAPDGREFDVKPLFQLVEDILNRATPGVDPLISAAQTRIETSDDRT 60

Query: 82  QQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYSWDAKLVLALAAF 141
            QA F+A+++A+SFTIDRISCEIA K+LGG DAHATTLS+F +L++YSW+AKLVL L+AF
Sbjct: 61  NQASFIALLEALSFTIDRISCEIAYKSLGGGDAHATTLSIFDLLTSYSWEAKLVLTLSAF 120

Query: 142 ALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLNNLIKAMMGVTRC 201
           A+ YGEFWLLAQIYSSNQLAKSMAILKQ+P I+EH SG LK RFD LNNLI+AM+ +TRC
Sbjct: 121 AVNYGEFWLLAQIYSSNQLAKSMAILKQVPIILEH-SGQLKPRFDALNNLIRAMVAITRC 179

Query: 202 IVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTGMGHEFVIS-TS 260
           I+EFK++PS YI+QD P  ++AM HIP AVYWTIRSVVACATQITTLT MGHE+  S T+
Sbjct: 180 IIEFKELPSMYISQDVPALATAMTHIPTAVYWTIRSVVACATQITTLTSMGHEYWTSATN 239

Query: 261 EAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLKAL 320
           EAWELST+AHK+ +I + LKK +  CY++I++K + E +QML+ LF+SIHIDNMK+L+AL
Sbjct: 240 EAWELSTMAHKINSILDLLKKQLTLCYQYIDDKWNAETFQMLLNLFESIHIDNMKILRAL 299

Query: 321 IYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQ 380
           I  KDD+QPL++GSTKRRVNI+VLRRKNVLLLIS L IS +ELSILEQIYNESR+H TR 
Sbjct: 300 ISPKDDVQPLLEGSTKRRVNIDVLRRKNVLLLISGLSISHDELSILEQIYNESRVHGTRM 359

Query: 381 ESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKN 440
           ES YEVVWIP+VD  + W D  Q +FETLQ++MPWY+VY PTLID+AVIR++K+VWHF+N
Sbjct: 360 ESQYEVVWIPVVDRSVMWTDAMQDRFETLQATMPWYSVYTPTLIDKAVIRFIKEVWHFRN 419

Query: 441 KPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPLVL 500
           KPILVVLDPQGRVVSPNA+HMMWIWGS AFPFTSLREEALWKEETWRLELLVDGIDP VL
Sbjct: 420 KPILVVLDPQGRVVSPNAIHMMWIWGSTAFPFTSLREEALWKEETWRLELLVDGIDPTVL 479

Query: 501 DWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRD---KC 552
           +W+KEGK+I+LYGG D+EW+RKFTT A++VA+ ARIPLEMVYVGKS KR+   KC
Sbjct: 480 NWVKEGKFIYLYGGTDMEWIRKFTTTAKAVASAARIPLEMVYVGKSNKREQVRKC 534

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452266|ref|XP_002270119.1| PREDICTED: uncharacterized protein LOC100244128 isoform 1 [Vitis vinifera]

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/533 (72%), Positives = 459/533 (86%), Gaps = 13/533 (2%)

Query: 23  ISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRAT---FQTDIDETDAQAHLEIED 79
           +SDDNMM++QI ATHAPDGRE DVKPLF LVEDILNRAT    QT I+ +D        D
Sbjct: 1   MSDDNMMVKQIHATHAPDGREFDVKPLFQLVEDILNRATPGAAQTRIETSD--------D 52

Query: 80  NAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYSWDAKLVLALA 139
              QA F+A+++A+SFTIDRISCEIA K+LGG DAHATTLS+F +L++YSW+AKLVL L+
Sbjct: 53  RTNQASFIALLEALSFTIDRISCEIAYKSLGGGDAHATTLSIFDLLTSYSWEAKLVLTLS 112

Query: 140 AFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLNNLIKAMMGVT 199
           AFA+ YGEFWLLAQIYSSNQLAKSMAILKQ+P I+EH SG LK RFD LNNLI+AM+ +T
Sbjct: 113 AFAVNYGEFWLLAQIYSSNQLAKSMAILKQVPIILEH-SGQLKPRFDALNNLIRAMVAIT 171

Query: 200 RCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTGMGHEFVIS- 258
           RCI+EFK++PS YI+QD P  ++AM HIP AVYWTIRSVVACATQITTLT MGHE+  S 
Sbjct: 172 RCIIEFKELPSMYISQDVPALATAMTHIPTAVYWTIRSVVACATQITTLTSMGHEYWTSA 231

Query: 259 TSEAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLK 318
           T+EAWELST+AHK+ +I + LKK +  CY++I++K + E +QML+ LF+SIHIDNMK+L+
Sbjct: 232 TNEAWELSTMAHKINSILDLLKKQLTLCYQYIDDKWNAETFQMLLNLFESIHIDNMKILR 291

Query: 319 ALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLT 378
           ALI  KDD+QPL++GSTKRRVNI+VLRRKNVLLLIS L IS +ELSILEQIYNESR+H T
Sbjct: 292 ALISPKDDVQPLLEGSTKRRVNIDVLRRKNVLLLISGLSISHDELSILEQIYNESRVHGT 351

Query: 379 RQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHF 438
           R ES YEVVWIP+VD  + W D  Q +FETLQ++MPWY+VY PTLID+AVIR++K+VWHF
Sbjct: 352 RMESQYEVVWIPVVDRSVMWTDAMQDRFETLQATMPWYSVYTPTLIDKAVIRFIKEVWHF 411

Query: 439 KNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPL 498
           +NKPILVVLDPQGRVVSPNA+HMMWIWGS AFPFTSLREEALWKEETWRLELLVDGIDP 
Sbjct: 412 RNKPILVVLDPQGRVVSPNAIHMMWIWGSTAFPFTSLREEALWKEETWRLELLVDGIDPT 471

Query: 499 VLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDK 551
           VL+W+KEGK+I+LYGG D+EW+RKFTT A++VA+ ARIPLEMVYVGKS KR++
Sbjct: 472 VLNWVKEGKFIYLYGGTDMEWIRKFTTTAKAVASAARIPLEMVYVGKSNKREQ 524

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087569|emb|CBI34825.3| unnamed protein product [Vitis vinifera]

 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/531 (71%), Positives = 460/531 (86%), Gaps = 3/531 (0%)

Query: 23  ISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTDIDETDAQAHLEI-EDNA 81
           +SDDNMM++QI ATHAPDGRE DVKPLF LVEDILNRAT   D   + AQ  +E  +D  
Sbjct: 1   MSDDNMMVKQIHATHAPDGREFDVKPLFQLVEDILNRATPGVDPLISAAQTRIETSDDRT 60

Query: 82  QQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYSWDAKLVLALAAF 141
            QA F+A+++A+SFTIDRISCEIA K+LGG DAHA TLS+F++L++YSW+AKLVL L+AF
Sbjct: 61  NQASFIALLEALSFTIDRISCEIAYKSLGGGDAHAMTLSIFNLLTSYSWEAKLVLTLSAF 120

Query: 142 ALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLNNLIKAMMGVTRC 201
           A+ YGEFWLLAQI SSNQLAKSMAILKQ+P+I+EH SG LK RFD LNNLI+AM+ +TRC
Sbjct: 121 AVNYGEFWLLAQISSSNQLAKSMAILKQVPTILEH-SGQLKPRFDALNNLIRAMVAITRC 179

Query: 202 IVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTGMGHEFVIS-TS 260
           I+EFK++PS YI+QD P  ++AM HIP AVYWTIRSVVACATQITT T MGHE+ IS T+
Sbjct: 180 IIEFKELPSMYISQDVPALATAMKHIPTAVYWTIRSVVACATQITTFTSMGHEYWISATN 239

Query: 261 EAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLKAL 320
           EAWELST+AHK+ +I + LKK +  CY++I++K++ E +QML+ LF+SIHIDNMK+L+AL
Sbjct: 240 EAWELSTMAHKINSILDLLKKQLTLCYQYIDDKRNAETFQMLLNLFESIHIDNMKILRAL 299

Query: 321 IYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQ 380
           I  KDD+QPL++GSTKRRVNI+VLRRKNVLLLIS L IS +ELSIL+QIYNESR+H TR 
Sbjct: 300 ISPKDDVQPLLEGSTKRRVNIDVLRRKNVLLLISGLSISHDELSILDQIYNESRVHGTRM 359

Query: 381 ESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKN 440
           ES YEVVWIP+VD  + W D  Q +F TLQ++MPWY+VY PTLID+AVIR++K+VWHF+N
Sbjct: 360 ESQYEVVWIPVVDRSVVWTDAMQDRFVTLQATMPWYSVYTPTLIDKAVIRFIKEVWHFRN 419

Query: 441 KPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPLVL 500
           KPILVVLDPQGRVVSPNA+HMMWIWGS AFPFTSLREEALWKEETWRLELLVDGIDP VL
Sbjct: 420 KPILVVLDPQGRVVSPNAIHMMWIWGSTAFPFTSLREEALWKEETWRLELLVDGIDPTVL 479

Query: 501 DWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDK 551
           +W+KEGK+I+LYGG D+EW+RKFTT AR+VA+ ARIPLEMVYVGKS KR++
Sbjct: 480 NWVKEGKFIYLYGGTDMEWIRKFTTTARAVASAARIPLEMVYVGKSNKREQ 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087568|emb|CBI34824.3| unnamed protein product [Vitis vinifera]

 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/531 (71%), Positives = 460/531 (86%), Gaps = 3/531 (0%)

Query: 23  ISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTDIDETDAQAHLEI-EDNA 81
           +SDDNMM++QI ATHAPDGRE DVKPLF LVEDILNRAT   D   + AQ  +E  +D  
Sbjct: 1   MSDDNMMVKQIHATHAPDGREFDVKPLFQLVEDILNRATPGVDPLISAAQTRIETSDDRT 60

Query: 82  QQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYSWDAKLVLALAAF 141
            QA F A+++A+SFTIDRISCEIA K+LGG DAHATTLS+F++L++YSW+AKLVL L+AF
Sbjct: 61  NQASFFALLEALSFTIDRISCEIAYKSLGGGDAHATTLSIFNLLTSYSWEAKLVLTLSAF 120

Query: 142 ALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLNNLIKAMMGVTRC 201
           A+ YGEFWLLAQI SSNQLAKSMAILKQ+P+I+EH SG LK RFD LNNLI+AM+ +TRC
Sbjct: 121 AVNYGEFWLLAQISSSNQLAKSMAILKQVPTILEH-SGQLKPRFDALNNLIRAMVAITRC 179

Query: 202 IVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTGMGHEFVIS-TS 260
           I+EFK++PS YI+QD P  ++AM HIP AVYWTIRSVVACATQITTLT MGHE+ IS T+
Sbjct: 180 IIEFKELPSMYISQDVPALATAMTHIPTAVYWTIRSVVACATQITTLTSMGHEYWISATN 239

Query: 261 EAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLKAL 320
           EAWELST+AHK+ +I + LKK +  CY++I++K++ E +QML+ LF+SIHIDNMK+L+AL
Sbjct: 240 EAWELSTMAHKINSILDLLKKQLTLCYQYIDDKRNAETFQMLLNLFESIHIDNMKILRAL 299

Query: 321 IYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQ 380
           I  KDD+QPL++GSTKRRVNI+VLRRKNVLLLIS L IS +ELSIL+QIYNESR H TR 
Sbjct: 300 ISPKDDVQPLLEGSTKRRVNIDVLRRKNVLLLISGLSISHDELSILDQIYNESRDHGTRM 359

Query: 381 ESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKN 440
           ES YEVVWIP+VD  + W D  Q +F TLQ++MPWY+VY PTLID+AVIR++K+VWHF+N
Sbjct: 360 ESQYEVVWIPVVDRSVVWTDAMQDRFVTLQATMPWYSVYTPTLIDKAVIRFIKEVWHFRN 419

Query: 441 KPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPLVL 500
           KPILVVLDPQG+VVSPNA+HMMWIWGS AFPFTSLREEALW+EE+W+LELLVDGIDP +L
Sbjct: 420 KPILVVLDPQGKVVSPNAIHMMWIWGSTAFPFTSLREEALWREESWKLELLVDGIDPTIL 479

Query: 501 DWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDK 551
           +WIKEGK+I+LYGG D+EW+RKFTT AR+VA+ ARIPLEMVYVG+S KR++
Sbjct: 480 NWIKEGKFIYLYGGTDLEWIRKFTTTARAVASAARIPLEMVYVGQSKKREQ 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452256|ref|XP_002271555.1| PREDICTED: uncharacterized protein LOC100268167 [Vitis vinifera]

 Score =  802 bits (2072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/533 (71%), Positives = 460/533 (86%), Gaps = 13/533 (2%)

Query: 23  ISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRAT---FQTDIDETDAQAHLEIED 79
           +SDDN+M++QI ATHAPDGRE DVKPLF LVEDILNRAT    QT I+ +D        D
Sbjct: 1   MSDDNIMVKQIHATHAPDGREFDVKPLFQLVEDILNRATPGAAQTRIETSD--------D 52

Query: 80  NAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSMLSNYSWDAKLVLALA 139
              QA F+A+++A+SFTIDRISCEIA K+LGG DAHATTLS+F++L++YSW+AKLVL L+
Sbjct: 53  RTNQASFIALLEALSFTIDRISCEIAYKSLGGGDAHATTLSIFNLLTSYSWEAKLVLTLS 112

Query: 140 AFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLNNLIKAMMGVT 199
           AFA+ YGEFWLLAQIYSSNQLAKSMAILKQ+P+I+EH SG LK RFD LNNLI+AM+  T
Sbjct: 113 AFAVNYGEFWLLAQIYSSNQLAKSMAILKQVPTILEH-SGQLKPRFDALNNLIRAMVAST 171

Query: 200 RCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTGMGHEFVIS- 258
           RCI+EFK++PS YI+QD P  ++AM HIP AVYWTIRSVVACATQITT T MGHE+ IS 
Sbjct: 172 RCIIEFKELPSMYISQDVPALATAMTHIPTAVYWTIRSVVACATQITTFTSMGHEYWISA 231

Query: 259 TSEAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLK 318
           T+EAWELST+AHK+ +I + LKK +  CY++I++K++ E +QML+ LFDSIHIDNMK+L+
Sbjct: 232 TNEAWELSTMAHKINSILDLLKKQLTLCYQYIDDKRNAETFQMLLNLFDSIHIDNMKILR 291

Query: 319 ALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLT 378
           ALI  KDD+QPL++GSTKRRVNI+VLRRKNVLLLIS L IS +ELSILEQIYNESR+H T
Sbjct: 292 ALISPKDDVQPLLEGSTKRRVNIDVLRRKNVLLLISGLSISHDELSILEQIYNESRVHGT 351

Query: 379 RQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHF 438
           R ES YEVVWIP+VD  + W D  Q +F TLQ++MPWY+VY PTLID+AVIR++K+VWHF
Sbjct: 352 RMESQYEVVWIPVVDRSVVWTDAMQDRFVTLQATMPWYSVYTPTLIDKAVIRFIKEVWHF 411

Query: 439 KNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPL 498
           +NKPILVVLDPQG+VVSPNA+HMMWIWGS AFPFTSLREEALW+EE+W+LELLVDGIDP 
Sbjct: 412 RNKPILVVLDPQGKVVSPNAIHMMWIWGSTAFPFTSLREEALWREESWKLELLVDGIDPT 471

Query: 499 VLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDK 551
           +L+WIKEGK+I+LYGG D+EW+RKFTT AR+VA+ ARIPLEMVYVG+S KR++
Sbjct: 472 ILNWIKEGKFIYLYGGTDMEWIRKFTTTARAVASAARIPLEMVYVGQSKKREQ 524

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	570
TAIR|locus:2084158	740	SEOR1 "Sieve-Element-Occlusion	0.938	0.722	0.512	1e-148
TAIR|locus:2084143	822	SEOa "sieve element occlusion	0.915	0.635	0.388	8.7e-95
TAIR|locus:2008590	576	AT1G67790 "AT1G67790" [Arabido	0.440	0.435	0.300	1.3e-32

TAIR|locus:2084158 SEOR1 "Sieve-Element-Occlusion-Related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1452 (516.2 bits), Expect = 1.0e-148, P = 1.0e-148
 Identities = 280/546 (51%), Positives = 381/546 (69%)

Query:     6 GHDDSQQLIRRDRSMVSISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTD 65
             G   S ++I      +S SD++MM++ IQ TH+PD REV V+ L +LVEDIL+RAT  ++
Sbjct:    21 GKTPSMEMIPATGLAMS-SDESMMLKLIQQTHSPDAREVQVRGLLSLVEDILDRATLDSE 79

Query:    66 IDETDAQAHLEIEDNAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHATTLSLFSML 125
              D   +   L  ED   Q+  ++++D++S+ IDR++CEIA K+L GSD+H  T+S+F  L
Sbjct:    80 -DTNASMLPLPTEDKLMQSSMMSVLDSVSYAIDRVACEIAYKSLTGSDSHEITMSVFEHL 138

Query:   126 SNYSWDXXXXXXXXXXXXYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGPLKSRF 185
             S++ WD             YGEFWLL Q YS NQLAKS+A+LK +P +    +  L+S  
Sbjct:   139 SSFQWDGKLVLTLAAFALNYGEFWLLVQFYSKNQLAKSLAMLKLVP-VQNRVT--LESVS 195

Query:   186 DTLNNLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQI 245
               LN+LI+ M  VT C+VE  ++P  YIT D P+ S  ++ IPIAVYWTIRSV+AC +QI
Sbjct:   196 QGLNDLIREMKSVTACVVELSELPDRYITPDVPQLSRILSTIPIAVYWTIRSVIACISQI 255

Query:   246 TTLTGMGHEFVISTSEAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKL 305
               +T MGHE + +  + WE S LA+KLKNIH+ L + +  CYRHIE+++S E+ ++L  L
Sbjct:   256 NMITAMGHEMMNTQMDLWETSMLANKLKNIHDHLAETLRLCYRHIEKQRSSESLKVLHSL 315

Query:   306 FDSIHIDNMKVLKALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI 365
             FD+ HIDNMK+L AL++ K  + PL DG TKR+V+++VLRRK VLLLISDL+I Q+ELSI
Sbjct:   316 FDTTHIDNMKILTALVHPKPHITPLQDGLTKRKVHLDVLRRKTVLLLISDLNILQDELSI 375

Query:   366 LEQIYNESRLHLTRQE--SH--YEVVWIPIVDHFIHWD-DPT-QKKFETLQSSMPWYTVY 419
              EQIY ESR +L   +  SH  YEVVW+P+VD    ++  P  QKKFE L+  MPWY+V 
Sbjct:   376 FEQIYTESRRNLVGVDGKSHMPYEVVWVPVVDPIEDFERSPILQKKFEDLRDPMPWYSVD 435

Query:   420 HPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEA 479
              P LI+R V+ +++  WHF NKPILVV+DPQG   S NALHM+WIWG+ AFPFT  REE 
Sbjct:   436 SPKLIERHVVEFMRGRWHFMNKPILVVIDPQGNEASLNALHMIWIWGTEAFPFTRSREEE 495

Query:   480 LWKEETWRLELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLE 539
             LW+ ET+ L L+VDGID ++ +WIK   YIFLYGGDD++W+R+FT AA++ A  + + LE
Sbjct:   496 LWRRETFSLNLIVDGIDSVIFNWIKPDNYIFLYGGDDLDWIRRFTMAAKATAKDSNVNLE 555

Query:   540 MVYVGK 545
             M YVGK
Sbjct:   556 MAYVGK 561

GO:0005634 "nucleus" evidence=ISM

GO:0043621 "protein self-association" evidence=IPI

TAIR|locus:2084143 SEOa "sieve element occlusion a" [Arabidopsis thaliana (taxid:3702)]

 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 217/559 (38%), Positives = 312/559 (55%)

Query:     6 GHDDSQQLIRRDRSMVSISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTD 65
             G    Q   R  R M S+SDD +M  ++  TH+PD    DV  L ++V DI    +    
Sbjct:   119 GPGKKQAFHRNGRPMFSLSDDRVMADRVLKTHSPDMIFFDVTSLLSVVNDIFK--SHVPS 176

Query:    66 IDETDAQAHLEIEDNAQQAGFLAMIDAISFTIDRISCEIACKALGGSDAHA--------- 116
             ID +  +  L  +D A    F    D I    D+ISCEI CK L G ++H          
Sbjct:   177 IDSSAPKPSLVFKDYADHTSFETFADLI----DQISCEIDCKCLHGGESHGMMTSGLHLD 232

Query:   117 ----TTLSLFSMLSNYSWDXXXXXXXXXXXXYYGEFWLLAQIYSSNQLAKSMAILKQLPS 172
                 TT S+ S++S Y WD             YG F LLA+ +++NQL KS+A++KQLPS
Sbjct:   233 SRNTTTFSVLSLVSKYRWDAKLVLVLSALAVKYGVFLLLAETHATNQLTKSLALIKQLPS 292

Query:   173 IMEHTSGPLKSRFDTLNNLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVY 232
             I    +  L  R D    L++ M+ +T  I++   +P N+IT     F+    HIP AVY
Sbjct:   293 IFSRQNA-LHQRLDKTRILMQDMVDLTTTIIDIYQLPPNHITA---AFTD---HIPTAVY 345

Query:   233 WTIRSVVACATQITTLTGMGHEFVISTSEAWELSTLAHKLKNIHESLKKLMATCYRHIEE 292
             W +R V+ C + I+  +G   + ++S  E  E+   + +L+ I+  L +        IEE
Sbjct:   346 WIVRCVLICVSHISGASGFKQDQIMSFMEVSEIHENSERLRKINAYLLEQFKKSKMTIEE 405

Query:   293 KKSHEAYQMLVKLFDSI-HIDNMKVLKALIYAKDDLQPLVDGSTKRRVNIEVLRRKNVLL 351
                 E YQ L++ F +I H+D +  L  L+   D L     G +KRRV I VL +K+VLL
Sbjct:   406 GIIEEEYQELIQTFTTIIHVDVVPPLLRLLRPIDFLYHGA-GVSKRRVGINVLTQKHVLL 464

Query:   352 LISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQS 411
             LISDL+  ++EL ILE +Y E+      Q+S +E++W+P+ D    W +    KFE L  
Sbjct:   465 LISDLENIEKELYILESLYTEAW-----QQS-FEILWVPVQDF---WTEADDAKFEALHM 515

Query:   412 SMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFP 471
             +M WY +  P  + RA IR+V++ W FKN+PILV LDP+G+V+S NA  M+WIW   A P
Sbjct:   516 NMRWYVLGEPRKLRRAAIRFVREWWGFKNRPILVALDPKGQVMSTNAFPMVWIWQPFAHP 575

Query:   472 FTSLREEALWKEETWRLELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVA 531
             FT+ RE  LW E+ W LE L+DG DP  L+ + +GKYI LYGG+D++W++ FT+  R+VA
Sbjct:   576 FTTARERDLWSEQEWNLEFLIDGTDPHSLNQLVDGKYICLYGGEDMQWIKNFTSLWRNVA 635

Query:   532 NTARIPLEMVYVGKSTKRD 550
               A I LEMVYVGK   ++
Sbjct:   636 KAANIQLEMVYVGKRNPKN 654

GO:0009507 "chloroplast" evidence=ISM

GO:0043621 "protein self-association" evidence=IPI

TAIR|locus:2008590 AT1G67790 "AT1G67790" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-32, P = 1.3e-32
 Identities = 80/266 (30%), Positives = 149/266 (56%)

Query:   287 YRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLKALIYAKDDLQPLVDGSTKRRVNIEVLRR 346
             +  I  K++     +L +   +I++   +V+K+ +     +Q +      ++++I  ++ 
Sbjct:   181 FEKIPFKQAKLDNNILGETLSNIYLTTYRVVKSALTC---MQQIPYFKQTQQISITEVQD 237

Query:   347 KNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF 406
             K  LLL+S   + +    +L+Q+Y+      T  E +YE++W+PI      W D  ++ F
Sbjct:   238 KVTLLLLSKPPV-EPLFFLLQQLYDHPSN--TNTEQNYEIIWVPIPSSQ-KWTDEEKEIF 293

Query:   407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-NKPILVVLDPQGRVVSPNALHMMWIW 465
             +   +S+PW +V  P L+   ++ + K  WH+K N+ +LVV+D  GR V+ NA+ M+ IW
Sbjct:   294 DFYSNSLPWISVRQPWLMSSTILNFFKQEWHYKDNEAMLVVIDSNGRFVNMNAMDMVLIW 353

Query:   466 GSNAFPFTSLREEALWKEETWRLELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTT 525
             G  A+PF+  RE+ LWKE  W + LL+DGI P       EG+ I ++G ++++W+ +F +
Sbjct:   354 GVKAYPFSVSREDELWKEHGWSINLLLDGIHPTF-----EGREICIFGSENLDWIDEFVS 408

Query:   526 AARSVANTARIPLEMVYVGKSTKRDK 551
              AR + N     LE++Y+    +RD+
Sbjct:   409 LARKIQNLG-FQLELIYLSNQ-RRDE 432

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	570
cd03009	131	cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l	8e-05

>gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 15/107 (14%)

Query: 366 LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLID 425
           L + Y +  L  + +   +E+V       FI WD   ++ F    S MPW  V  P   D
Sbjct: 40  LVEFYEK--LKESGKN--FEIV-------FISWDR-DEESFNDYFSKMPWLAV--P-FSD 84

Query: 426 RAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPF 472
           R     +   +  +  P L++LD  G VV+ +A  ++  +G++AFPF
Sbjct: 85  RERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	570
PF14576	286	SEO_N: Sieve element occlusion N-terminus	100.0
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.93
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.92
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.92
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.9
PF14577	235	SEO_C: Sieve element occlusion C-terminus	99.87
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.79
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.69
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.65
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.64
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.6
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.59
PLN02412	167	probable glutathione peroxidase	99.58
PTZ00056	199	glutathione peroxidase; Provisional	99.57
PTZ00256	183	glutathione peroxidase; Provisional	99.57
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.56
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.55
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.55
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.55
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.55
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.54
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.52
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.52
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.52
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.5
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.49
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.48
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.47
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.47
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.46
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.45
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.45
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.44
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.43
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.42
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.42
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.42
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.41
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.41
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.4
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.37
PRK13190	202	putative peroxiredoxin; Provisional	99.35
PRK13599	215	putative peroxiredoxin; Provisional	99.35
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.33
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.31
PRK15000	200	peroxidase; Provisional	99.31
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.28
PRK13191	215	putative peroxiredoxin; Provisional	99.28
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.24
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.23
PRK13189	222	peroxiredoxin; Provisional	99.23
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.16
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.08
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.07
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.01
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	98.94
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.93
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.89
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	98.87
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	98.86
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	98.76
PHA02278	103	thioredoxin-like protein	98.7
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.7
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	98.68
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.68
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.67
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.65
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	98.62
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	98.62
PRK09381	109	trxA thioredoxin; Provisional	98.61
PRK10996	139	thioredoxin 2; Provisional	98.6
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.6
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	98.59
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	98.58
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	98.58
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	98.58
PTZ00051	98	thioredoxin; Provisional	98.55
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	98.53
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	98.52
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	98.52
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	98.49
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	98.49
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	98.49
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.47
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	98.45
PTZ00062	204	glutaredoxin; Provisional	98.43
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	98.43
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	98.38
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.36
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	98.34
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	98.33
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.3
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	98.28
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	98.27
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	98.27
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	98.26
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.23
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	98.22
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	98.21
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.2
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	98.17
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	98.14
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	98.13
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.13
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	98.11
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	98.11
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	98.1
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	98.09
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	98.07
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	98.06
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	98.04
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	98.02
PTZ00102	477	disulphide isomerase; Provisional	98.02
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	98.01
PTZ00102	477	disulphide isomerase; Provisional	97.95
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	97.91
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	97.9
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	97.89
cd02947	93	TRX_family TRX family; composed of two groups: Gro	97.88
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	97.79
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	97.74
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	97.71
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	97.61
PLN02309	457	5'-adenylylsulfate reductase	97.6
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	97.52
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	97.45
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	97.42
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	97.39
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	97.37
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	97.35
smart00594	122	UAS UAS domain.	97.32
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	97.25
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	97.19
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.14
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	97.08
PHA02125	75	thioredoxin-like protein	97.05
PF13728	215	TraF: F plasmid transfer operon protein	96.96
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	96.93
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	96.91
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	96.89
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	96.86
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	96.85
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	96.82
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	96.81
PHA02278	103	thioredoxin-like protein	96.8
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	96.78
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	96.65
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	96.5
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	96.42
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	96.38
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	96.36
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	96.33
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	96.31
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	96.16
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	96.16
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	96.14
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	96.09
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	96.07
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	95.95
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	95.9
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	95.9
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	95.87
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	95.78
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	95.76
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	95.71
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	95.71
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	95.71
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	95.69
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	95.69
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	95.67
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	95.64
PRK10996	139	thioredoxin 2; Provisional	95.63
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	95.6
cd02947	93	TRX_family TRX family; composed of two groups: Gro	95.56
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	95.53
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	95.53
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	95.52
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	95.51
PRK09381	109	trxA thioredoxin; Provisional	95.47
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	95.4
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	95.34
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	95.26
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	95.2
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	95.15
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	95.14
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	95.13
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	95.09
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	95.06
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	95.05
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	95.04
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	95.04
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	95.02
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	95.01
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	94.92
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	94.87
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	94.73
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	94.72
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	94.68
PTZ00051	98	thioredoxin; Provisional	94.66
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	94.57
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	94.54
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	94.52
COG2143	182	Thioredoxin-related protein [Posttranslational mod	94.51
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	94.35
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	94.27
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	94.19
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	94.1
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	94.06
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	94.01
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	94.01
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	94.0
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	93.98
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	93.9
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	93.8
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	93.77
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	93.58
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	93.48
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	93.32
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	93.28
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	93.26
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	93.25
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	93.14
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	93.14
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	93.0
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	92.9
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	92.79
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	92.69
PRK10638	83	glutaredoxin 3; Provisional	92.65
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	92.38
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	92.37
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	92.2
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	92.16
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	91.97
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	91.89
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	91.77
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	91.76
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	91.7
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	91.55
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	91.12
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	91.06
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	90.93
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	90.88
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.8
PHA02125	75	thioredoxin-like protein	90.58
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	90.34
PLN02309	457	5'-adenylylsulfate reductase	90.26
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	90.23
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	90.12
PRK11200	85	grxA glutaredoxin 1; Provisional	89.81
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	89.58
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	89.58
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	89.55
KOG3425	128	consensus Uncharacterized conserved protein [Funct	89.46
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	89.39
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	89.39
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	89.37
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	88.92
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	88.77
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	88.59
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	88.53
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	88.52
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	88.51
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	88.48
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	88.47
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	88.34
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	87.87
PRK11200	85	grxA glutaredoxin 1; Provisional	87.77
PRK10329	81	glutaredoxin-like protein; Provisional	87.46
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	87.2
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	87.2
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	87.19
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	86.53
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	86.28
PTZ00056	199	glutathione peroxidase; Provisional	85.63
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	85.62
PRK13728	181	conjugal transfer protein TrbB; Provisional	84.91
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	84.62
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	84.58
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	84.33
PHA03050	108	glutaredoxin; Provisional	84.22
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	83.43
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	83.34
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	83.29
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	82.69
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	82.49
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	82.34
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	82.13
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	81.54
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	81.1
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	80.69
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	80.58
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	80.46
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	80.35
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	80.2

>PF14576 SEO_N: Sieve element occlusion N-terminus

Probab=100.00  E-value=2.3e-110  Score=846.82  Aligned_cols=284  Identities=62%  Similarity=0.992  Sum_probs=269.1

Q ss_pred             cCcchhHHHHHhhhcCCCCCccChhhhHHHHHHHHhhhcccccccc-chhhhhhhh-hhhhhhhhhhhhhcchhhhhhhh
Q 008311           23 ISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTDIDE-TDAQAHLEI-EDNAQQAGFLAMIDAISFTIDRI  100 (570)
Q Consensus        23 ~sd~~i~~~~i~~tH~~d~~~~D~~~l~~~v~~i~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~i  100 (570)
                      +|||++||||||+||+||||+|||+|||++||||++||+++++... ...+.+.+. +++..+.++.+++||++|+||||
T Consensus         1 ~~~D~~ilk~I~~TH~pd~~~~Dv~~Ll~~venIl~~at~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~l~~~i~rI   80 (286)
T PF14576_consen    1 TSDDDQILKQIYATHVPDGRKFDVEPLLHLVENILKRATPIVGDSIDTVVQKHPEALEDKDYQIEPIASFEPLFYTIKRI   80 (286)
T ss_pred             CCcHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHhhhhhcchhhhhhhcchhhhhhhhcccchHhhcCchhHHHHHH
Confidence            4688888999999999999999999999999999999988773222 233444444 67778888899999999999999


Q ss_pred             hhheeeccCCCCchhhhHHHHHhhhccCcchhHHHHHHHHHHhhhhhhhhhhhccCCcHHHHHHHHHcCCchhhhccCCC
Q 008311          101 SCEIACKALGGSDAHATTLSLFSMLSNYSWDAKLVLALAAFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGP  180 (570)
Q Consensus       101 s~em~~k~~~~~~~h~tt~~il~~L~~ysWdaK~vl~laAFal~YGefw~l~q~~~~~~lakS~a~lkq~p~~~~~~~~~  180 (570)
                      ||||+|||+||+|||+|||+|||+||+|||||||||||||||+||||||||+|+|++||||||||+|||||+|+||. ++
T Consensus        81 Scem~ck~~g~~~aH~TTm~Il~~Ls~YsWDAK~VLtLAAFAl~YGeFwlLaq~~~~n~LakSlA~LkqlP~i~~~~-~~  159 (286)
T PF14576_consen   81 SCEMSCKCSGEEDAHQTTMSILNMLSSYSWDAKAVLTLAAFALEYGEFWLLAQIYPTNPLAKSLAILKQLPDILEHS-DS  159 (286)
T ss_pred             HHHheecCCCCchHhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhHHHHhhhcccCHHHHHHHHHhcchhhhhhh-hc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             CcchhhhHHHHHHHHHHHhhhhhhcccCCcccccCCcccHHHHhhhchhHHHHHHHHHHHHhhhcccccccCcccccccc
Q 008311          181 LKSRFDTLNNLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTGMGHEFVISTS  260 (570)
Q Consensus       181 ~k~~~~~~~~Lvk~~~~v~~~i~e~~~l~~~y~~~d~p~l~~a~~~ip~~vYW~I~s~vac~~~i~~l~~~~~~~~~~~~  260 (570)
                      +||||+++|+|||+||||++||+||++||++||++|||+|++|++|||++|||||||+|||++||++||+||+| +.+++
T Consensus       160 lk~r~~~ln~LVk~mldV~~cIief~~L~~~y~~~Dvpal~~a~~~IPvavYWtI~siVAc~sqI~~lt~~~~e-~~~~~  238 (286)
T PF14576_consen  160 LKPRFDALNNLVKAMLDVTKCIIEFEELPSQYITKDVPALSTALAHIPVAVYWTIRSIVACASQITGLTGMGHE-ITSTT  238 (286)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHcChhhccccchhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcccc-cccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 88999


Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhcch
Q 008311          261 EAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHI  311 (570)
Q Consensus       261 ~~~els~~~~kl~~i~~~L~~~l~~c~~~i~~~~~~e~Y~~l~~lf~~~~~  311 (570)
                      ++||||+|++||++|++|||+||+.|++||++   +|+|++|+++|++||+
T Consensus       239 ~~~eLS~l~~KL~~I~~~Lk~qL~~C~~~I~~---~E~y~~l~~lf~t~~~  286 (286)
T PF14576_consen  239 EAWELSSLAHKLSNILSHLKKQLDLCRQQIEE---IEDYQMLLKLFETPHI  286 (286)
T ss_pred             hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999999999   9999999999999863

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.93  E-value=1.1e-25  Score=203.45  Aligned_cols=127  Identities=26%  Similarity=0.451  Sum_probs=111.8

Q ss_pred             ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH
Q 008311          331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET  408 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~  408 (570)
                      +.+.+|+.+++++++||+|+|+|||+||++|+.++  |.++|+++++    .+.+++|++|++        |.+.+.|.+
T Consensus         3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~----~~~~~~vv~is~--------d~~~~~~~~   70 (131)
T cd03009           3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE----SGKNFEIVFISW--------DRDEESFND   70 (131)
T ss_pred             ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHh----cCCCEEEEEEEC--------CCCHHHHHH
Confidence            45678999999999999999999999999999999  9999999974    135799999996        344578888


Q ss_pred             HHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCC
Q 008311          409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPF  472 (570)
Q Consensus       409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPF  472 (570)
                      +.+++||+.++|+   +.+....+.+.|++.++|+++|||++|+|+.+++++++..||..||||
T Consensus        71 ~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~  131 (131)
T cd03009          71 YFSKMPWLAVPFS---DRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF  131 (131)
T ss_pred             HHHcCCeeEcccC---CHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence            8888999999885   223456788999999999999999999999999999999999999998

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.92  E-value=1.3e-25  Score=210.87  Aligned_cols=133  Identities=23%  Similarity=0.300  Sum_probs=116.1

Q ss_pred             CcccCCCCCeeecc-ccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDGSTKRRVNIE-VLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g~~G~~Vsls-~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ..+.+.+|..+..+ .|+||+|+|||||+||||||.|+  |+++|+++++    .+..|||||||        +|++.++
T Consensus        15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~----~~~~fEVvfVS--------~D~~~~~   82 (157)
T KOG2501|consen   15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKD----NAAPFEVVFVS--------SDRDEES   82 (157)
T ss_pred             CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHh----cCCceEEEEEe--------cCCCHHH
Confidence            34567788888887 69999999999999999999999  9999999985    24589999999        5777788


Q ss_pred             HHHHHc--CCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhh
Q 008311          406 FETLQS--SMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKE  483 (570)
Q Consensus       406 F~~~~~--~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e  483 (570)
                      +++|+.  .++|+++||    ..+.++.+.+.|+|++||++++++|+|++|+.+|+.+|..+|.       ....+++.+
T Consensus        83 ~~~y~~~~~~~W~~iPf----~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~-------~~~~a~~~e  151 (157)
T KOG2501|consen   83 LDEYMLEHHGDWLAIPF----GDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS-------ADPKALVDE  151 (157)
T ss_pred             HHHHHHhcCCCeEEecC----CCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc-------cCHHHHHHH
Confidence            887766  689999999    5567899999999999999999999999999999999999986       456777776


Q ss_pred             c
Q 008311          484 E  484 (570)
Q Consensus       484 ~  484 (570)
                      |
T Consensus       152 w  152 (157)
T KOG2501|consen  152 W  152 (157)
T ss_pred             H
Confidence            3

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.92  E-value=4.8e-25  Score=206.45  Aligned_cols=124  Identities=21%  Similarity=0.406  Sum_probs=101.9

Q ss_pred             CCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhh-hccCCCeEEEEEecccCCCCCChhhHHHHHHHHc
Q 008311          335 TKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHL-TRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQS  411 (570)
Q Consensus       335 ~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~-~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~  411 (570)
                      +-.++++++|+||+|+|||||+|||||+.|+  |.++|++++++. .+.+++|+||+||.        |++.+.++++.+
T Consensus        14 ~~~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~--------D~~~~~~~~f~~   85 (146)
T cd03008          14 DTEREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSM--------DQSEQQQESFLK   85 (146)
T ss_pred             hcccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEEC--------CCCHHHHHHHHH
Confidence            3357788999999999999999999999999  999999997421 00235799999995        444556777777


Q ss_pred             CCC--ceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCC
Q 008311          412 SMP--WYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAF  470 (570)
Q Consensus       412 ~MP--W~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aF  470 (570)
                      +|+  |+.+++.   + .....+.+.|++.++|++||||++|+|+.++++..|..+|.+||
T Consensus        86 ~~~~~~~~~p~~---~-~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~  142 (146)
T cd03008          86 DMPKKWLFLPFE---D-EFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF  142 (146)
T ss_pred             HCCCCceeeccc---c-hHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence            776  9888773   3 23457899999999999999999999999999999999998775

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.90  E-value=2.8e-23  Score=188.93  Aligned_cols=127  Identities=28%  Similarity=0.436  Sum_probs=106.4

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      .+++|.  +++++++++||+|+|+|||+||++|+.++  |+++|+++++    .+.+++|++|++        |++.+.+
T Consensus         2 ~~~~~~--~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~----~~~~v~vi~Vs~--------d~~~~~~   67 (132)
T cd02964           2 FLLDGE--GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE----EGKNFEIVFVSR--------DRSEESF   67 (132)
T ss_pred             ccccCC--ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhh----cCCCeEEEEEec--------CCCHHHH
Confidence            345565  68999999999999999999999999999  9999999974    124799999996        3334556


Q ss_pred             HHHHcCC-CceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhh-hcCCCCCC
Q 008311          407 ETLQSSM-PWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWI-WGSNAFPF  472 (570)
Q Consensus       407 ~~~~~~M-PW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~-~G~~aFPF  472 (570)
                      +.+.+++ +|+.++|.   |......+++.|++.++|++++||++|+|+.+++..++.. ||..||||
T Consensus        68 ~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~  132 (132)
T cd02964          68 NEYFSEMPPWLAVPFE---DEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW  132 (132)
T ss_pred             HHHHhcCCCeEeeccC---cHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence            6666666 79988872   4334567889999999999999999999999999999987 99999998

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PF14577 SEO_C: Sieve element occlusion C-terminus

Probab=99.87  E-value=7.7e-23  Score=203.10  Aligned_cols=91  Identities=62%  Similarity=1.097  Sum_probs=87.7

Q ss_pred             chhHHHHhhhcCccccccccCCCccccccccCCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhh
Q 008311          474 SLREEALWKEETWRLELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCG  553 (570)
Q Consensus       474 ~~~~e~L~~e~~w~~~ll~d~~d~~i~~~~~egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~  553 (570)
                      ++++++||++++|+++|++||+||.|.+|+.||||||||||+|.+|||+||..++++++++++++||+||||+|++|+||
T Consensus         1 ~sree~Lw~e~~W~l~lL~d~Idp~i~~wi~e~kyI~iYGG~D~eWIq~Ft~~a~~va~~a~i~LEm~yvGKsn~~e~v~   80 (235)
T PF14577_consen    1 KSREESLWKEETWFLELLVDGIDPTILNWIKEGKYIFIYGGEDMEWIQEFTKAARKVAKAADIQLEMVYVGKSNPREQVR   80 (235)
T ss_pred             CchHHHhhhhhhHHHHHHHcccCHhHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCChHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccccc
Q 008311          554 ESWQPLQLKSL  564 (570)
Q Consensus       554 ~~~~~~~~~~~  564 (570)
                      +++.+|....|
T Consensus        81 ~~~~~i~~e~l   91 (235)
T PF14577_consen   81 KIIATITSEKL   91 (235)
T ss_pred             HHhhhhhhccc
Confidence            99999987655

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.79  E-value=6.5e-19  Score=150.31  Aligned_cols=91  Identities=22%  Similarity=0.430  Sum_probs=76.8

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCC--Cceeeccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSM--PWYTVYHP  421 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~M--PW~aV~fP  421 (570)
                      ||+|+|+|||+||+||+.++  |.++|+++++     +++++||+||+        |++.+.++++.+++  +|+.+++.
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-----~~~v~~v~Vs~--------d~~~~~~~~~~~~~~~~~~~~~~~   67 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-----KDDVEFVFVSL--------DEDEEEWKKFLKKNNFPWYNVPFD   67 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEE---------SSSHHHHHHHHHTCTTSSEEEETT
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEEe--------CCCHHHHHHHHHhcCCCceEEeeC
Confidence            89999999999999999999  9999999973     46899999996        45667787776666  99999973


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                          ......+.+.|++.++|+++|+|++|+|
T Consensus        68 ----~~~~~~l~~~~~i~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   68 ----DDNNSELLKKYGINGIPTLVLLDPDGKI   95 (95)
T ss_dssp             ----THHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred             ----cchHHHHHHHCCCCcCCEEEEECCCCCC
Confidence                3446789999999999999999999987

...

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.69  E-value=9.1e-17  Score=144.90  Aligned_cols=108  Identities=16%  Similarity=0.126  Sum_probs=82.4

Q ss_pred             CCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCC
Q 008311          336 KRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSM  413 (570)
Q Consensus       336 G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~M  413 (570)
                      |+.+++++++||+|+|+|||+||++|+.++  |+++|+++++      .+++||+|+..+.+   .+.+.+..+++..+ 
T Consensus        13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~------~~~~vi~i~~~~~~---~~~~~~~~~~~~~~-   82 (126)
T cd03012          13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD------DGLVVIGVHSPEFA---FERDLANVKSAVLR-   82 (126)
T ss_pred             CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc------CCeEEEEeccCccc---cccCHHHHHHHHHH-
Confidence            578999999999999999999999999999  9999999963      47999999852111   12233344443333 


Q ss_pred             CceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccc
Q 008311          414 PWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       414 PW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~n  457 (570)
                        +.++||.+.|.  ...+.+.|++.++|+++|||++|+|+...
T Consensus        83 --~~~~~p~~~D~--~~~~~~~~~v~~~P~~~vid~~G~v~~~~  122 (126)
T cd03012          83 --YGITYPVANDN--DYATWRAYGNQYWPALYLIDPTGNVRHVH  122 (126)
T ss_pred             --cCCCCCEEECC--chHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence              23356666665  35678899999999999999999998753

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.65  E-value=6.9e-16  Score=135.44  Aligned_cols=105  Identities=13%  Similarity=0.173  Sum_probs=77.6

Q ss_pred             ccCCCCCeeeccccC-CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          331 VDGSTKRRVNIEVLR-RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       331 ~~g~~G~~Vsls~Lk-GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      +.+.+|+.+++++++ ||+|+|+||++||++|+.++  |.+++++++       .++.|+.++  |       .+.+..+
T Consensus         5 l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~-------~~~~vi~v~--~-------~~~~~~~   68 (114)
T cd02967           5 LTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA-------DWLDVVLAS--D-------GEKAEHQ   68 (114)
T ss_pred             eecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhc-------CCcEEEEEe--C-------CCHHHHH
Confidence            455788999999998 99999999999999999998  989888763       257788765  2       1222333


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccc
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~n  457 (570)
                      ++.++++..  .+|.+.+.    .+.+.|++.++|++++||++|+|+.++
T Consensus        69 ~~~~~~~~~--~~p~~~~~----~~~~~~~~~~~P~~~vid~~G~v~~~~  112 (114)
T cd02967          69 RFLKKHGLE--AFPYVLSA----ELGMAYQVSKLPYAVLLDEAGVIAAKG  112 (114)
T ss_pred             HHHHHhCCC--CCcEEecH----HHHhhcCCCCcCeEEEECCCCeEEecc
Confidence            333333321  13434442    477899999999999999999999875

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.64  E-value=9.3e-16  Score=140.73  Aligned_cols=104  Identities=17%  Similarity=0.212  Sum_probs=83.3

Q ss_pred             CCCCeeeccccCCCEEEEEEecC-CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHH
Q 008311          334 STKRRVNIEVLRRKNVLLLISDL-DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQ  410 (570)
Q Consensus       334 ~~G~~Vsls~LkGKvVlL~FwAs-WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~  410 (570)
                      .+|+.+++++++||+|+|+||++ |||||+.++  |.++++++++      +++++|+|+..+      +.....|.+. 
T Consensus        16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~------~~v~~v~v~~~~------~~~~~~~~~~-   82 (146)
T PF08534_consen   16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD------KGVDVVGVSSDD------DPPVREFLKK-   82 (146)
T ss_dssp             TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT------TTCEEEEEEESS------SHHHHHHHHH-
T ss_pred             CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc------CceEEEEecccC------CHHHHHHHHh-
Confidence            89999999999999999999999 999999999  9999999863      479999998622      3334444432 


Q ss_pred             cCCCceeeccccccChHHHHHHHHhCCCC---------CCceEEEECCCCcEEccc
Q 008311          411 SSMPWYTVYHPTLIDRAVIRYVKDVWHFK---------NKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       411 ~~MPW~aV~fP~l~D~~~~~~L~~~y~V~---------~IPtlVVLDpqGkVv~~n  457 (570)
                      ...+     ||.+.|.  ...+.+.|++.         ++|++++||++|+|+...
T Consensus        83 ~~~~-----~~~~~D~--~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~  131 (146)
T PF08534_consen   83 YGIN-----FPVLSDP--DGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH  131 (146)
T ss_dssp             TTTT-----SEEEEET--TSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred             hCCC-----ceEEech--HHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence            3333     4444563  35688899998         999999999999999763

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.60  E-value=9.4e-16  Score=143.08  Aligned_cols=114  Identities=16%  Similarity=0.187  Sum_probs=75.7

Q ss_pred             ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccC-CCCC-ChhhHHHH
Q 008311          331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDH-FIHW-DDPTQKKF  406 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~-s~~w-~D~~~~~F  406 (570)
                      +.+.+|+.+++++++||+|+|+|||+||| |+.++  |+++|++++      +.+++||+|++.+. +.+- +.+..+.|
T Consensus         7 l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~------~~~~~vv~v~~~~~~~~~~~~~~~~~~f   79 (152)
T cd00340           7 VKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYK------DRGLVVLGFPCNQFGGQEPGSNEEIKEF   79 (152)
T ss_pred             EECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhc------CCCEEEEEeccCccccCCCCCHHHHHHH
Confidence            45678999999999999999999999999 99999  999999996      24799999986210 0000 11223444


Q ss_pred             HHHHcCCCceeeccccccChHHHH-HHHHhCC--CCCCc-----------eEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIR-YVKDVWH--FKNKP-----------ILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~-~L~~~y~--V~~IP-----------tlVVLDpqGkVv~~  456 (570)
                      .+-...+     +||.+.|.+... ...+.|+  +.++|           ++++||++|+|+.+
T Consensus        80 ~~~~~~~-----~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~  138 (152)
T cd00340          80 CETNYGV-----TFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKR  138 (152)
T ss_pred             HHHhcCC-----CceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEE
Confidence            3311122     344443321111 1233344  34556           89999999999976

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.59  E-value=8.4e-15  Score=131.55  Aligned_cols=103  Identities=14%  Similarity=0.047  Sum_probs=75.3

Q ss_pred             CCCC--CeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH
Q 008311          333 GSTK--RRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET  408 (570)
Q Consensus       333 g~~G--~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~  408 (570)
                      +.+|  +.+++++++||+|+|+|||+|||+|+.++  |.++++++         +++||.|++.+     +.+..++|.+
T Consensus        10 ~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---------~~~vv~v~~~~-----~~~~~~~~~~   75 (127)
T cd03010          10 ALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---------RVPIYGINYKD-----NPENALAWLA   75 (127)
T ss_pred             cccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---------CcEEEEEECCC-----CHHHHHHHHH
Confidence            3445  78999999999999999999999999998  87776542         38999998622     2223333432


Q ss_pred             HHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                       ....+|..+.    .|.  ...+.+.|++.++|++++||++|+++..
T Consensus        76 -~~~~~~~~~~----~D~--~~~~~~~~~v~~~P~~~~ld~~G~v~~~  116 (127)
T cd03010          76 -RHGNPYAAVG----FDP--DGRVGIDLGVYGVPETFLIDGDGIIRYK  116 (127)
T ss_pred             -hcCCCCceEE----ECC--cchHHHhcCCCCCCeEEEECCCceEEEE
Confidence             1334554332    354  3468888999999999999999999865

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PLN02412 probable glutathione peroxidase

Probab=99.58  E-value=2.6e-15  Score=142.97  Aligned_cols=117  Identities=15%  Similarity=0.218  Sum_probs=78.2

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCC-C-CCh-hhH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFI-H-WDD-PTQ  403 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~-~-w~D-~~~  403 (570)
                      ..+.+.+|+++++++++||+|+|+|||+|||+|+.++  |+++|+++++      .+++||+||..+... + -+. +..
T Consensus        12 f~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~------~g~~vvgv~~~~~~~~~~~~~~~~~   85 (167)
T PLN02412         12 FTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE------QGFEILAFPCNQFLGQEPGSNEEIQ   85 (167)
T ss_pred             eEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh------CCcEEEEecccccccCCCCCHHHHH
Confidence            3455789999999999999999999999999999988  9999999973      479999999622100 0 011 112


Q ss_pred             HHHHHHHcCCCceeeccccccC--hH------HHHHHHH----hCC--CCCCceEEEECCCCcEEccc
Q 008311          404 KKFETLQSSMPWYTVYHPTLID--RA------VIRYVKD----VWH--FKNKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       404 ~~F~~~~~~MPW~aV~fP~l~D--~~------~~~~L~~----~y~--V~~IPtlVVLDpqGkVv~~n  457 (570)
                      +.|.+   +   +.++||.+.+  ..      .-+.+..    .++  +.+.|+++|||++|+|+..-
T Consensus        86 ~~~~~---~---~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~  147 (167)
T PLN02412         86 QTVCT---R---FKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY  147 (167)
T ss_pred             HHHHH---c---cCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence            33322   1   1234444321  11      1111211    122  66789999999999999864

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.57  E-value=7e-15  Score=144.19  Aligned_cols=115  Identities=10%  Similarity=0.146  Sum_probs=76.4

Q ss_pred             ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCC-CCC-ChhhHHHH
Q 008311          331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHF-IHW-DDPTQKKF  406 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s-~~w-~D~~~~~F  406 (570)
                      +.+.+|+.+++++++||+|+|+|||+|||||+.++  |+++|++++      +.+++||+||..+.. .+. +.++.++|
T Consensus        24 l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~------~~g~~vvgv~~~~~~~~e~d~~e~~~~f   97 (199)
T PTZ00056         24 VKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFN------PLGLEILAFPTSQFLNQEFPNTKDIRKF   97 (199)
T ss_pred             EECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHh------cCceEEEEecchhccCCCCCCHHHHHHH
Confidence            45678999999999999999999999999999999  999999996      357999999962100 000 11233444


Q ss_pred             HHHHcCCCceeeccccccCh--------HHHHHH----HHhCCCC----CC---ceEEEECCCCcEEccc
Q 008311          407 ETLQSSMPWYTVYHPTLIDR--------AVIRYV----KDVWHFK----NK---PILVVLDPQGRVVSPN  457 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~--------~~~~~L----~~~y~V~----~I---PtlVVLDpqGkVv~~n  457 (570)
                      .+ ...+     +||.+.|.        +..+.+    ...|+..    ++   |+++|||++|+|+.+.
T Consensus        98 ~~-~~~~-----~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~  161 (199)
T PTZ00056         98 ND-KNKI-----KYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF  161 (199)
T ss_pred             HH-HcCC-----CceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence            32 1233     44443221        111222    2334443    23   3799999999999654

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.57  E-value=2.3e-14  Score=138.26  Aligned_cols=121  Identities=16%  Similarity=0.249  Sum_probs=79.3

Q ss_pred             CCCCcc--cCCCCCeeeccccCCCEE-EEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccC-C-CCC
Q 008311          326 DLQPLV--DGSTKRRVNIEVLRRKNV-LLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDH-F-IHW  398 (570)
Q Consensus       326 ~~~pl~--~g~~G~~Vsls~LkGKvV-lL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~-s-~~w  398 (570)
                      ...|.|  .+.+|+.+++++++||+| ++.|||+|||||+.++  |+++|+++++      .+++||+||..+. + ..+
T Consensus        18 ~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~------~gv~vv~vs~~~~~~~~~~   91 (183)
T PTZ00256         18 KSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS------QGLEILAFPCNQFMEQEPW   91 (183)
T ss_pred             CcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh------CCcEEEEEecccccccCCC
Confidence            334444  578999999999999965 4566999999999999  9999999963      4799999996210 0 011


Q ss_pred             ChhhHHHHHHHHcCCCceeeccccccC--hH------HHHHHHH--------hCCCCCCce---EEEECCCCcEEccc
Q 008311          399 DDPTQKKFETLQSSMPWYTVYHPTLID--RA------VIRYVKD--------VWHFKNKPI---LVVLDPQGRVVSPN  457 (570)
Q Consensus       399 ~D~~~~~F~~~~~~MPW~aV~fP~l~D--~~------~~~~L~~--------~y~V~~IPt---lVVLDpqGkVv~~n  457 (570)
                      +.++...|..  ++   +.++||.+.|  ..      .-+.+.+        .+++.++|+   ++|||++|+|+.+.
T Consensus        92 ~~~~~~~f~~--~~---~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~  164 (183)
T PTZ00256         92 DEPEIKEYVQ--KK---FNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF  164 (183)
T ss_pred             CHHHHHHHHH--Hh---cCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence            2233334421  12   2345665532  11      1112222        246789995   69999999999763

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.56  E-value=1.8e-14  Score=127.67  Aligned_cols=107  Identities=20%  Similarity=0.279  Sum_probs=85.0

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecC-CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDL-DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAs-WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ..+.+.+|+.+++++++||+++|+||++ |||+|+.++  |.++|+++++      .+++|++|+. |     ..+..+.
T Consensus         8 f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~------~~~~vi~is~-d-----~~~~~~~   75 (124)
T PF00578_consen    8 FTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD------KGVQVIGIST-D-----DPEEIKQ   75 (124)
T ss_dssp             EEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT------TTEEEEEEES-S-----SHHHHHH
T ss_pred             cEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhcc------ceEEeeeccc-c-----cccchhh
Confidence            4456788999999999999999999999 999999999  9999999973      4799999996 2     2233455


Q ss_pred             HHHHHcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEc
Q 008311          406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVS  455 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~  455 (570)
                      |.+.. ..     +||.+.|.  ...+.+.|++.      ..|+.+|||++|+|+.
T Consensus        76 ~~~~~-~~-----~~~~~~D~--~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~  123 (124)
T PF00578_consen   76 FLEEY-GL-----PFPVLSDP--DGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY  123 (124)
T ss_dssp             HHHHH-TC-----SSEEEEET--TSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred             hhhhh-cc-----ccccccCc--chHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence            54432 23     44445564  35688899998      9999999999999975

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.55  E-value=2e-14  Score=158.75  Aligned_cols=113  Identities=11%  Similarity=0.109  Sum_probs=87.7

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ..+.+.+|+.+.++  +||+|+|+|||+||+||+.++  |.++|++++      .++++||.|++.+.+   .+.+.+.|
T Consensus        41 f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k------~~~v~VI~Vs~~~~~---~e~~~~~~  109 (521)
T PRK14018         41 LKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAK------FSSANLITVASPGFL---HEKKDGDF  109 (521)
T ss_pred             eEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhc------cCCeEEEEEeccccc---ccccHHHH
Confidence            34467889999887  999999999999999999999  999999985      246999999852111   23445667


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .++...+.|..  +|.+.|.  ...+.+.|+++++|+++|||++|+++..
T Consensus       110 ~~~~~~~~y~~--~pV~~D~--~~~lak~fgV~giPTt~IIDkdGkIV~~  155 (521)
T PRK14018        110 QKWYAGLDYPK--LPVLTDN--GGTLAQSLNISVYPSWAIIGKDGDVQRI  155 (521)
T ss_pred             HHHHHhCCCcc--cceeccc--cHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence            76666665542  3444564  3568899999999999999999999865

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.55  E-value=1.2e-14  Score=146.26  Aligned_cols=118  Identities=16%  Similarity=0.219  Sum_probs=80.2

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCC-CC-CChhhHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHF-IH-WDDPTQK  404 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s-~~-w~D~~~~  404 (570)
                      ..+.+.+|+.+++++++||+|+|+|||+||++|+.++  |+++|+++++      ++++||+|+..+.. .+ -+.++.+
T Consensus        82 F~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~------~Gv~VIgV~~d~~~~~e~~s~~ei~  155 (236)
T PLN02399         82 FTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT------QGFEILAFPCNQFGGQEPGSNPEIK  155 (236)
T ss_pred             eEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc------CCcEEEEEecccccccCCCCHHHHH
Confidence            3455789999999999999999999999999999999  9999999963      47999999963210 00 0122334


Q ss_pred             HHHHHHcCCCceeecccccc--ChHH------HHHHHHhCC------CCCCceEEEECCCCcEEccc
Q 008311          405 KFETLQSSMPWYTVYHPTLI--DRAV------IRYVKDVWH------FKNKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~--D~~~------~~~L~~~y~------V~~IPtlVVLDpqGkVv~~n  457 (570)
                      +|..  .+   +.++||.+.  |..+      .+.++..++      +++.|+++|||++|+|+.+.
T Consensus       156 ~f~~--~~---~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~  217 (236)
T PLN02399        156 QFAC--TR---FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERY  217 (236)
T ss_pred             HHHH--Hh---cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEE
Confidence            4421  11   234566543  2211      112222222      45679999999999999863

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.55  E-value=2.5e-14  Score=138.12  Aligned_cols=100  Identities=18%  Similarity=0.113  Sum_probs=70.9

Q ss_pred             CCeeecccc-CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcC
Q 008311          336 KRRVNIEVL-RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSS  412 (570)
Q Consensus       336 G~~Vsls~L-kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~  412 (570)
                      |+.++++++ +||+|+|+|||+||+||+.++  |.++++          ++++||+|++.|     +.++.++|.+- ..
T Consensus        57 g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----------~~~~vi~v~~~~-----~~~~~~~~~~~-~~  120 (185)
T PRK15412         57 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----------QGIRVVGMNYKD-----DRQKAISWLKE-LG  120 (185)
T ss_pred             CccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----------cCCEEEEEECCC-----CHHHHHHHHHH-cC
Confidence            466777766 899999999999999999999  876642          258999999521     12233344321 23


Q ss_pred             CCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccc
Q 008311          413 MPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       413 MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~n  457 (570)
                      .+|..+    +.|..  ..+.+.|++.++|++++||++|+|+...
T Consensus       121 ~~~~~~----~~D~~--~~~~~~~gv~~~P~t~vid~~G~i~~~~  159 (185)
T PRK15412        121 NPYALS----LFDGD--GMLGLDLGVYGAPETFLIDGNGIIRYRH  159 (185)
T ss_pred             CCCceE----EEcCC--ccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence            444322    23542  3567889999999999999999998753

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.55  E-value=3.4e-14  Score=132.57  Aligned_cols=114  Identities=21%  Similarity=0.273  Sum_probs=77.3

Q ss_pred             ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecc--cCCCCCChhhHHHH
Q 008311          331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIV--DHFIHWDDPTQKKF  406 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIv--D~s~~w~D~~~~~F  406 (570)
                      +.+.+|+.+++++++||+|+|+|||+|||+|+.++  |.++|+++++      .+++||+||..  ..+..=+.+..+.|
T Consensus         7 l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~------~~~~v~~i~~~~~~~~~~d~~~~~~~f   80 (153)
T TIGR02540         7 VKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGP------SHFNVLAFPCNQFGESEPDSSKEIESF   80 (153)
T ss_pred             eECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh------CCeEEEEEeccccccCCCCCHHHHHHH
Confidence            45678899999999999999999999999999999  9999999973      47999999851  11100012233444


Q ss_pred             HHHHcCCCceeeccccccC-----hH---HHHHHHHhCCCCCCce----EEEECCCCcEEccc
Q 008311          407 ETLQSSMPWYTVYHPTLID-----RA---VIRYVKDVWHFKNKPI----LVVLDPQGRVVSPN  457 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D-----~~---~~~~L~~~y~V~~IPt----lVVLDpqGkVv~~n  457 (570)
                      .+-..     .++||.+.|     ..   ..+....  +..++|+    ++|||++|+|+..-
T Consensus        81 ~~~~~-----~~~fp~~~d~~~~~~~~~~~~~~~~~--~~~~~p~~~~~tflID~~G~v~~~~  136 (153)
T TIGR02540        81 ARRNY-----GVTFPMFSKIKILGSEAEPAFRFLVD--SSKKEPRWNFWKYLVNPEGQVVKFW  136 (153)
T ss_pred             HHHhc-----CCCCCccceEecCCCCCCcHHHHHHh--cCCCCCCCccEEEEEcCCCcEEEEE
Confidence            32111     234555433     11   1112211  3346898    99999999998753

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.54  E-value=3.8e-14  Score=133.24  Aligned_cols=109  Identities=18%  Similarity=0.293  Sum_probs=85.9

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ..+.+.+|+.+++++++||+++|+|||+||++|+.++  |.++++++++      .+++++.|+.        |.+.+.+
T Consensus        44 ~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~------~~~~vi~i~~--------d~~~~~~  109 (173)
T PRK03147         44 FVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE------KGVEIIAVNV--------DETELAV  109 (173)
T ss_pred             cEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc------CCeEEEEEEc--------CCCHHHH
Confidence            4456789999999999999999999999999999998  9999999962      4699999986        2233344


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .++.++.+   ++||.+.|.  ...+.+.|++.++|+++++|++|+++..
T Consensus       110 ~~~~~~~~---~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~g~i~~~  154 (173)
T PRK03147        110 KNFVNRYG---LTFPVAIDK--GRQVIDAYGVGPLPTTFLIDKDGKVVKV  154 (173)
T ss_pred             HHHHHHhC---CCceEEECC--cchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence            44443332   355555564  3578889999999999999999999864

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.52  E-value=7.9e-14  Score=118.85  Aligned_cols=108  Identities=19%  Similarity=0.266  Sum_probs=81.8

Q ss_pred             ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH
Q 008311          331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET  408 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~  408 (570)
                      +.+.+|+.+++++++||+++|+||++||++|+..+  |.+++++++      +.++.++.|++ |.    .  ..+...+
T Consensus         4 ~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~------~~~~~~~~v~~-d~----~--~~~~~~~   70 (116)
T cd02966           4 LPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYK------DDGVEVVGVNV-DD----D--DPAAVKA   70 (116)
T ss_pred             ccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhC------CCCeEEEEEEC-CC----C--CHHHHHH
Confidence            44577899999999999999999999999999998  889988884      24799999986 21    1  1333333


Q ss_pred             HHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      +....+   .++|.+.|.  ...+.+.|++.++|+++|+|++|+++..
T Consensus        71 ~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~P~~~l~d~~g~v~~~  113 (116)
T cd02966          71 FLKKYG---ITFPVLLDP--DGELAKAYGVRGLPTTFLIDRDGRIRAR  113 (116)
T ss_pred             HHHHcC---CCcceEEcC--cchHHHhcCcCccceEEEECCCCcEEEE
Confidence            333333   234434454  3568999999999999999999999864

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.52  E-value=6.3e-14  Score=166.68  Aligned_cols=116  Identities=15%  Similarity=0.178  Sum_probs=84.3

Q ss_pred             CCCcccC----CCCCeeec-cccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCC
Q 008311          327 LQPLVDG----STKRRVNI-EVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWD  399 (570)
Q Consensus       327 ~~pl~~g----~~G~~Vsl-s~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~  399 (570)
                      .+|-|..    .+|+++++ ++++||+|+|+|||+||+||+.++  |+++|++++      +++|+||.|+..+.+   .
T Consensus       396 ~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~------~~~~~vvgV~~~~~D---~  466 (1057)
T PLN02919        396 KVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYK------DQPFTVVGVHSAKFD---N  466 (1057)
T ss_pred             cCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcC------CCCeEEEEEeccccc---c
Confidence            3455543    46888988 589999999999999999999999  999999996      347999999852111   1


Q ss_pred             hhhHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          400 DPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       400 D~~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      +++.+.++++..+.   .+.||.+.|.  ...+.+.|++.++|+++|+|++|+++.+
T Consensus       467 ~~~~~~~~~~~~~~---~i~~pvv~D~--~~~~~~~~~V~~iPt~ilid~~G~iv~~  518 (1057)
T PLN02919        467 EKDLEAIRNAVLRY---NISHPVVNDG--DMYLWRELGVSSWPTFAVVSPNGKLIAQ  518 (1057)
T ss_pred             cccHHHHHHHHHHh---CCCccEEECC--chHHHHhcCCCccceEEEECCCCeEEEE
Confidence            22334444333221   2334444454  3467888999999999999999999865

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.52  E-value=1e-13  Score=131.31  Aligned_cols=117  Identities=14%  Similarity=0.141  Sum_probs=87.1

Q ss_pred             cccCCCCCeeecccc-CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          330 LVDGSTKRRVNIEVL-RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       330 l~~g~~G~~Vsls~L-kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      .+.+.+|+.++++++ +||+|+|+||++|||+|..++  |.++++++++      .+++||.|++.+....+. .+.+.+
T Consensus         8 ~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~------~~v~~v~is~d~~~~~~~-d~~~~~   80 (171)
T cd02969           8 SLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA------KGVAVVAINSNDIEAYPE-DSPENM   80 (171)
T ss_pred             cccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh------CCeEEEEEecCccccccc-cCHHHH
Confidence            346678899999998 999999999999999999988  9999999962      479999999622100000 134455


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcccc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNA  458 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na  458 (570)
                      +++.+...   ++||.+.|..  +.+.+.|++.++|.++|||++|+|+...+
T Consensus        81 ~~~~~~~~---~~~~~l~D~~--~~~~~~~~v~~~P~~~lid~~G~v~~~~~  127 (171)
T cd02969          81 KAKAKEHG---YPFPYLLDET--QEVAKAYGAACTPDFFLFDPDGKLVYRGR  127 (171)
T ss_pred             HHHHHHCC---CCceEEECCc--hHHHHHcCCCcCCcEEEECCCCeEEEeec
Confidence            55443322   3455556653  46888999999999999999999986544

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.50  E-value=1.1e-13  Score=125.78  Aligned_cols=118  Identities=16%  Similarity=0.221  Sum_probs=83.5

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHH-hHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQ-EELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpP-Cr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ..+.+.+|+.+++++++||+++|+||++||++ |..++  |.++|++++++   +.++++||+|++ |...+ +.+..++
T Consensus         5 f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~---~~~~v~~v~vs~-d~~~d-~~~~~~~   79 (142)
T cd02968           5 FTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGAD---GGDDVQVVFISV-DPERD-TPEVLKA   79 (142)
T ss_pred             eEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHh---hcCceEEEEEEE-CCCCC-CHHHHHH
Confidence            34567789999999999999999999999998 99999  99999999741   114699999997 31100 1122334


Q ss_pred             HHHHHcCCCceeeccccccChHHHHHHHHhCCCCCC--------------ceEEEECCCCcEEcc
Q 008311          406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNK--------------PILVVLDPQGRVVSP  456 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~I--------------PtlVVLDpqGkVv~~  456 (570)
                      |.+.. ..+|..+..+    .+....+.+.||+...              |.++||||+|+|+..
T Consensus        80 ~~~~~-~~~~~~l~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~  139 (142)
T cd02968          80 YAKAF-GPGWIGLTGT----PEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY  139 (142)
T ss_pred             HHHHh-CCCcEEEECC----HHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence            43321 2466655532    2234678888987544              569999999999864

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.49  E-value=1.9e-13  Score=132.64  Aligned_cols=105  Identities=13%  Similarity=0.143  Sum_probs=75.6

Q ss_pred             CCcccCCCCCeeecc--ccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhH
Q 008311          328 QPLVDGSTKRRVNIE--VLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQ  403 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls--~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~  403 (570)
                      ...+.+.+|+.++++  .++||+|+|+|||+|||+|+.++  +.+++++.         ++++++|+. |     ++++.
T Consensus        54 ~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---------~~~vv~Is~-~-----~~~~~  118 (189)
T TIGR02661        54 IFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---------ETDVVMISD-G-----TPAEH  118 (189)
T ss_pred             CcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---------CCcEEEEeC-C-----CHHHH
Confidence            344567789999994  57999999999999999999999  88887543         467899983 2     23344


Q ss_pred             HHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          404 KKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       404 ~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      ++|.+- ..+     ++|.+..   ...+.+.|++.++|+.++||++|+|+..
T Consensus       119 ~~~~~~-~~~-----~~~~~~~---~~~i~~~y~v~~~P~~~lID~~G~I~~~  162 (189)
T TIGR02661       119 RRFLKD-HEL-----GGERYVV---SAEIGMAFQVGKIPYGVLLDQDGKIRAK  162 (189)
T ss_pred             HHHHHh-cCC-----Ccceeec---hhHHHHhccCCccceEEEECCCCeEEEc
Confidence            444331 122     2221111   2357789999999999999999999874

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.48  E-value=1.7e-13  Score=130.54  Aligned_cols=109  Identities=14%  Similarity=0.113  Sum_probs=81.7

Q ss_pred             CCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHH-
Q 008311          335 TKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQ-  410 (570)
Q Consensus       335 ~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~-  410 (570)
                      +|+.+++++++||+|+|+|| ++||++|..++  |.++|+++++      .++.||+||+ |     .....+.|.+.. 
T Consensus        18 ~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~------~~v~vv~Is~-d-----~~~~~~~~~~~~~   85 (173)
T cd03015          18 EFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK------LNAEVLGVST-D-----SHFSHLAWRNTPR   85 (173)
T ss_pred             CceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEec-C-----CHHHHHHHHHhhh
Confidence            34799999999999999999 89999999999  9999999963      4799999996 3     122334565432 


Q ss_pred             cCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEccc
Q 008311          411 SSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       411 ~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~n  457 (570)
                      ..+-+..++||.+.|.  ...+.+.|++.      .+|+++|||++|+|+..+
T Consensus        86 ~~~~~~~~~f~~l~D~--~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~  136 (173)
T cd03015          86 KEGGLGKINFPLLADP--KKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT  136 (173)
T ss_pred             hhCCccCcceeEEECC--chhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence            1111223345555565  35677889986      688999999999999875

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.47  E-value=2e-13  Score=123.78  Aligned_cols=107  Identities=19%  Similarity=0.251  Sum_probs=82.9

Q ss_pred             cccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          330 LVDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       330 l~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      .+.+.+|+.+++++++||+++|+|| ++|||+|...+  |.++++++++      ++++||+|++ |     +.+...+|
T Consensus         7 ~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~------~~~~vv~is~-d-----~~~~~~~~   74 (140)
T cd03017           7 TLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA------LGAVVIGVSP-D-----SVESHAKF   74 (140)
T ss_pred             cccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEcC-C-----CHHHHHHH
Confidence            3456789999999999999999999 58999999998  9999999963      4799999995 3     23333444


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCC---------ceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNK---------PILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~I---------PtlVVLDpqGkVv~~  456 (570)
                      .+   +.+   ++||.+.|..  +.+.+.|++...         |+++|||++|+|+..
T Consensus        75 ~~---~~~---~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~  125 (140)
T cd03017          75 AE---KYG---LPFPLLSDPD--GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV  125 (140)
T ss_pred             HH---HhC---CCceEEECCc--cHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence            33   222   2455555653  468889999988         999999999999875

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.47  E-value=2e-13  Score=129.92  Aligned_cols=108  Identities=19%  Similarity=0.101  Sum_probs=82.2

Q ss_pred             ccCCCCCeeeccccCCCEEEEEEecCC-CHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          331 VDGSTKRRVNIEVLRRKNVLLLISDLD-ISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkGKvVlL~FwAsW-CpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      +.+.+|+.+++++++||+|+|+||++| ||||..++  |+++|++++        +++||.||. |     +....++|.
T Consensus        29 l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--------~~~vv~vs~-D-----~~~~~~~f~   94 (167)
T PRK00522         29 LVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--------NTVVLCISA-D-----LPFAQKRFC   94 (167)
T ss_pred             EEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--------CcEEEEEeC-C-----CHHHHHHHH
Confidence            456789999999999999999999999 99999999  999888762        589999995 3     223445565


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCCCCCc---------eEEEECCCCcEEcccc
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKP---------ILVVLDPQGRVVSPNA  458 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IP---------tlVVLDpqGkVv~~na  458 (570)
                      +. ..++    .+|.+.|.. .+.+.+.||+.+.|         +++|||++|+|+....
T Consensus        95 ~~-~~~~----~~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~  148 (167)
T PRK00522         95 GA-EGLE----NVITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL  148 (167)
T ss_pred             Hh-CCCC----CceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence            42 1222    134444532 34678899998887         9999999999997754

>TIGR03137 AhpC peroxiredoxin

Probab=99.46  E-value=1.7e-13  Score=132.85  Aligned_cols=114  Identities=15%  Similarity=0.094  Sum_probs=85.0

Q ss_pred             CCccc--C-CCCC--eeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCC
Q 008311          328 QPLVD--G-STKR--RVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWD  399 (570)
Q Consensus       328 ~pl~~--g-~~G~--~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~  399 (570)
                      .|.|.  + .+|+  .+++++++||+|+|+|| |+||++|..++  |.++|+++++      .+++||+||. |     .
T Consensus         8 aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~------~gv~vi~VS~-D-----~   75 (187)
T TIGR03137         8 IKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKK------LGVEVYSVST-D-----T   75 (187)
T ss_pred             CCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh------cCCcEEEEeC-C-----C
Confidence            45543  3 3465  68888999999999999 99999999999  9999999963      4799999996 3     1


Q ss_pred             hhhHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEccc
Q 008311          400 DPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       400 D~~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~n  457 (570)
                      ....+.|.+...  ....++||.+.|.  ...+.+.|++.      ..|+++|||++|+|+...
T Consensus        76 ~~~~~~~~~~~~--~~~~l~fpllsD~--~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~  135 (187)
T TIGR03137        76 HFVHKAWHDTSE--AIGKITYPMLGDP--TGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE  135 (187)
T ss_pred             HHHHHHHHhhhh--hccCcceeEEECC--ccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence            233455543221  1124567777775  35788899986      469999999999998753

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.45  E-value=3.4e-13  Score=128.73  Aligned_cols=104  Identities=15%  Similarity=0.125  Sum_probs=71.5

Q ss_pred             ccCCCCC--eeecccc-CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          331 VDGSTKR--RVNIEVL-RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       331 ~~g~~G~--~Vsls~L-kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      +.+.+|+  .++++.+ +||+|+|+|||+|||+|+.++  |.++++          ++++|++|+..+     ..++..+
T Consensus        45 l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----------~~~~vi~V~~~~-----~~~~~~~  109 (173)
T TIGR00385        45 LAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----------DGLPIVGVDYKD-----QSQNALK  109 (173)
T ss_pred             ccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----------cCCEEEEEECCC-----ChHHHHH
Confidence            3445565  4555565 799999999999999999998  665542          258999998621     1222233


Q ss_pred             HHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      |-+- ..+||..+.    .|..  ..+.+.|++.++|++++||++|+|+..
T Consensus       110 ~~~~-~~~~f~~v~----~D~~--~~~~~~~~v~~~P~~~~id~~G~i~~~  153 (173)
T TIGR00385       110 FLKE-LGNPYQAIL----IDPN--GKLGLDLGVYGAPETFLVDGNGVILYR  153 (173)
T ss_pred             HHHH-cCCCCceEE----ECCC--CchHHhcCCeeCCeEEEEcCCceEEEE
Confidence            4321 234543222    2542  457888999999999999999999875

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.45  E-value=4.3e-13  Score=122.88  Aligned_cols=109  Identities=14%  Similarity=0.012  Sum_probs=80.5

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCC-CHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLD-ISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsW-CpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ..+.+.+|+.+++++++||+|+|+||++| ||+|+.++  |.++|++++        +++||.|++ |     .....+.
T Consensus         9 f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--------~~~vi~Is~-d-----~~~~~~~   74 (143)
T cd03014           9 FTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--------NTVVLTISA-D-----LPFAQKR   74 (143)
T ss_pred             cEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--------CCEEEEEEC-C-----CHHHHHH
Confidence            33467788999999999999999999999 69999999  999998862        589999996 2     2233455


Q ss_pred             HHHHHcCCCceeeccccccChHHHHHHHHhCCCCC------CceEEEECCCCcEEccc
Q 008311          406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKN------KPILVVLDPQGRVVSPN  457 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~------IPtlVVLDpqGkVv~~n  457 (570)
                      |.+   ++...  .||.+.|.. ...+.+.|++..      .|+++|||++|+|+...
T Consensus        75 ~~~---~~~~~--~~~~l~D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~  126 (143)
T cd03014          75 WCG---AEGVD--NVTTLSDFR-DHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE  126 (143)
T ss_pred             HHH---hcCCC--CceEeecCc-ccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence            543   22211  234344532 246778888863      79999999999998764

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.44  E-value=2.3e-13  Score=131.96  Aligned_cols=99  Identities=12%  Similarity=0.077  Sum_probs=76.7

Q ss_pred             CCCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          327 LQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      +.+.|.-.+|+.+++++++    +|+|||+|||||+.|+  |+++++++         +++|+.|++ |.       +. 
T Consensus        54 ~~~~f~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---------g~~Vi~Vs~-D~-------~~-  111 (181)
T PRK13728         54 APRWFRLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---------GFSVFPYTL-DG-------QG-  111 (181)
T ss_pred             CCCccCCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---------CCEEEEEEe-CC-------CC-
Confidence            4567777899999999998    7789999999999999  99999987         389999996 31       10 


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHHHhCCC--CCCceEEEECCCCcEEccccch
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHF--KNKPILVVLDPQGRVVSPNALH  460 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V--~~IPtlVVLDpqGkVv~~na~~  460 (570)
                                  ...||.++|.. ...+.+.|++  .++|+++++|++|+++......
T Consensus       112 ------------~~~fPv~~dd~-~~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G  156 (181)
T PRK13728        112 ------------DTAFPEALPAP-PDVMQTFFPNIPVATPTTFLVNVNTLEALPLLQG  156 (181)
T ss_pred             ------------CCCCceEecCc-hhHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEEC
Confidence                        03567766421 2456778995  6999999999999997543333

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.43  E-value=6e-13  Score=122.17  Aligned_cols=111  Identities=15%  Similarity=0.101  Sum_probs=81.6

Q ss_pred             CcccCCCCCeeeccccCC-CEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          329 PLVDGSTKRRVNIEVLRR-KNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkG-KvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ..+.+.+|+.+++++++| |+++|+|| ++||++|...+  |+++|+++++      .++.||+|+. |     ..+..+
T Consensus        10 ~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~------~~v~vi~vs~-d-----~~~~~~   77 (149)
T cd03018          10 FELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA------AGAEVLGISV-D-----SPFSLR   77 (149)
T ss_pred             cEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh------CCCEEEEecC-C-----CHHHHH
Confidence            345667899999999999 99888887 99999999999  9999999963      4799999995 2     223344


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHHHhCCCC----CCc--eEEEECCCCcEEccc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK----NKP--ILVVLDPQGRVVSPN  457 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~----~IP--tlVVLDpqGkVv~~n  457 (570)
                      +|.+. ...+     ||.+.|......+.+.|++.    ++|  ++++||++|+|+...
T Consensus        78 ~~~~~-~~~~-----~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~  130 (149)
T cd03018          78 AWAEE-NGLT-----FPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAW  130 (149)
T ss_pred             HHHHh-cCCC-----ceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEE
Confidence            45432 2333     44444642125677889887    444  899999999998763

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.42  E-value=6e-13  Score=129.66  Aligned_cols=111  Identities=12%  Similarity=0.074  Sum_probs=86.5

Q ss_pred             ccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          331 VDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      +.+.+...+++++++||+|+|+|| +.|||+|..++  |.+.|+++++      .+++|++||. |     +....++|.
T Consensus        16 ~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~------~g~~vigIS~-D-----~~~~~~a~~   83 (187)
T PRK10382         16 FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK------LGVDVYSVST-D-----THFTHKAWH   83 (187)
T ss_pred             EeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh------CCCEEEEEeC-C-----CHHHHHHHH
Confidence            333455778889999999999999 99999999999  9999999963      4799999996 3     233456665


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCC----CCC--ceEEEECCCCcEEccc
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHF----KNK--PILVVLDPQGRVVSPN  457 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V----~~I--PtlVVLDpqGkVv~~n  457 (570)
                      +-...+  ..++||.+.|.  ...+.+.||+    .++  |.++|||++|+|+...
T Consensus        84 ~~~~~~--~~l~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~  135 (187)
T PRK10382         84 SSSETI--AKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE  135 (187)
T ss_pred             Hhhccc--cCCceeEEEcC--chHHHHHcCCCcccCCceeeEEEEECCCCEEEEEE
Confidence            432222  35678877775  4689999998    467  9999999999998763

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.42  E-value=1e-12  Score=119.75  Aligned_cols=107  Identities=14%  Similarity=0.180  Sum_probs=78.7

Q ss_pred             cccCCCCCeeeccccC-CC-EEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          330 LVDGSTKRRVNIEVLR-RK-NVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       330 l~~g~~G~~Vsls~Lk-GK-vVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      .+.+.+|+.+++++++ || +|+++||++|||+|+.++  |.++|+++++      .+++||.|+. |     .......
T Consensus         6 ~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~------~~v~vv~V~~-~-----~~~~~~~   73 (149)
T cd02970           6 ELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDA------LGVELVAVGP-E-----SPEKLEA   73 (149)
T ss_pred             cccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh------cCeEEEEEeC-C-----CHHHHHH
Confidence            3456788999999875 34 566667899999999999  9999999963      4799999995 2     1222223


Q ss_pred             HHHHHcCCCceeeccccccChHHHHHHHHhCCCC-----------------------------CCceEEEECCCCcEEcc
Q 008311          406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-----------------------------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-----------------------------~IPtlVVLDpqGkVv~~  456 (570)
                      |.+   ..   .++||.+.|..  ..+.+.|++.                             .+|.++|||++|+|+..
T Consensus        74 ~~~---~~---~~~~p~~~D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~  145 (149)
T cd02970          74 FDK---GK---FLPFPVYADPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFA  145 (149)
T ss_pred             HHH---hc---CCCCeEEECCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEE
Confidence            332   22   23566667763  5678889984                             79999999999999864

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.42  E-value=1.2e-12  Score=121.63  Aligned_cols=108  Identities=14%  Similarity=0.173  Sum_probs=80.6

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecC-CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDL-DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAs-WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ..+.+.+|+.+++++++||+++|+||++ ||++|+.++  |.++++++++      .+++||+|++ |     +.+..++
T Consensus        13 f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~------~~v~vi~Is~-d-----~~~~~~~   80 (154)
T PRK09437         13 FSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK------AGVVVLGIST-D-----KPEKLSR   80 (154)
T ss_pred             cEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEcC-C-----CHHHHHH
Confidence            3355788999999999999999999997 577899998  9999999973      4799999996 2     2333344


Q ss_pred             HHHHHcCCCceeeccccccChHHHHHHHHhCCCCCC------------ceEEEECCCCcEEcc
Q 008311          406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNK------------PILVVLDPQGRVVSP  456 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~I------------PtlVVLDpqGkVv~~  456 (570)
                      |.+. ...+|     |.+.|..  ..+.+.|++.+.            |+++|||++|+|+..
T Consensus        81 ~~~~-~~~~~-----~~l~D~~--~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~  135 (154)
T PRK09437         81 FAEK-ELLNF-----TLLSDED--HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV  135 (154)
T ss_pred             HHHH-hCCCC-----eEEECCC--chHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence            4332 23344     4444542  457788988654            778999999999875

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.41  E-value=1.1e-12  Score=118.80  Aligned_cols=109  Identities=14%  Similarity=0.191  Sum_probs=82.7

Q ss_pred             cccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          330 LVDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       330 l~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      .+.+.+|+.+++++++||+++|+|| ++||++|...+  |.++|+++++      .+++||+|+. |     +....++|
T Consensus         6 ~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~------~~~~~i~is~-d-----~~~~~~~~   73 (140)
T cd02971           6 TLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK------GGAEVLGVSV-D-----SPFSHKAW   73 (140)
T ss_pred             eeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHH
Confidence            4556789999999999999999999 78999999999  9999999963      4799999995 2     22233444


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCc---------eEEEECCCCcEEccc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKP---------ILVVLDPQGRVVSPN  457 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IP---------tlVVLDpqGkVv~~n  457 (570)
                      .+.....+     ||.+.|..  ..+.+.|++...|         +.+|||++|+|+...
T Consensus        74 ~~~~~~~~-----~~~l~D~~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~  126 (140)
T cd02971          74 AEKEGGLN-----FPLLSDPD--GEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE  126 (140)
T ss_pred             HhcccCCC-----ceEEECCC--hHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence            43221333     44445653  4688889988766         899999999999763

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.41  E-value=4e-13  Score=130.64  Aligned_cols=103  Identities=18%  Similarity=0.254  Sum_probs=74.5

Q ss_pred             CCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEE------EEEecccCCCCCChhhHHH
Q 008311          334 STKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEV------VWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       334 ~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEI------V~IsIvD~s~~w~D~~~~~  405 (570)
                      .+.+.++.++|+||+++|+|||+||+|||.+.  |.++    ++      ++|.+      +.|+..|.     -.....
T Consensus        47 ~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~------~~~~~~~y~~t~~IN~dd~-----~~~~~~  111 (184)
T TIGR01626        47 TVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KA------AKFPPVKYQTTTIINADDA-----IVGTGM  111 (184)
T ss_pred             ccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HH------cCCCcccccceEEEECccc-----hhhHHH
Confidence            35567888999999999999999999999999  7777    31      35888      99996221     011223


Q ss_pred             H-H----HHHcCCCceeeccccccChHHHHHHHHhCCCCCCceE-EEECCCCcEEccc
Q 008311          406 F-E----TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPIL-VVLDPQGRVVSPN  457 (570)
Q Consensus       406 F-~----~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtl-VVLDpqGkVv~~n  457 (570)
                      | +    +.....||..    .++|..  ..+...|++.++|++ +|||++|+|+...
T Consensus       112 fVk~fie~~~~~~P~~~----vllD~~--g~v~~~~gv~~~P~T~fVIDk~GkVv~~~  163 (184)
T TIGR01626       112 FVKSSAKKGKKENPWSQ----VVLDDK--GAVKNAWQLNSEDSAIIVLDKTGKVKFVK  163 (184)
T ss_pred             HHHHHHHHhcccCCcce----EEECCc--chHHHhcCCCCCCceEEEECCCCcEEEEE
Confidence            3 2    2234556642    445753  457789999999998 8999999998753

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.40  E-value=9.8e-13  Score=116.94  Aligned_cols=102  Identities=21%  Similarity=0.307  Sum_probs=74.2

Q ss_pred             cccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          330 LVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       330 l~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      .+...+|+.++++.++||+++|+||++||++|+.++  |.+++++           ++++.|++ |..   +.+..+.|.
T Consensus         4 ~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----------~~~i~i~~-~~~---~~~~~~~~~   68 (123)
T cd03011           4 TATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----------YPVVSVAL-RSG---DDGAVARFM   68 (123)
T ss_pred             eeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----------CCEEEEEc-cCC---CHHHHHHHH
Confidence            345678899999999999999999999999999998  8888754           45788885 210   122333443


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                      +. ..++     ||.+.|.  ...+.+.|++.++|+++++|++| ++.
T Consensus        69 ~~-~~~~-----~~~~~d~--~~~~~~~~~i~~~P~~~vid~~g-i~~  107 (123)
T cd03011          69 QK-KGYG-----FPVINDP--DGVISARWGVSVTPAIVIVDPGG-IVF  107 (123)
T ss_pred             HH-cCCC-----ccEEECC--CcHHHHhCCCCcccEEEEEcCCC-eEE
Confidence            32 2234     4444454  24688899999999999999999 654

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.37  E-value=2.5e-12  Score=121.65  Aligned_cols=86  Identities=12%  Similarity=0.138  Sum_probs=59.0

Q ss_pred             CCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCC
Q 008311          336 KRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSM  413 (570)
Q Consensus       336 G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~M  413 (570)
                      |+.++++    ++++|+|||+|||||+.++  |+++|+++         +++|++|++ |      +...+       . 
T Consensus        44 G~~~~l~----~~~lvnFWAsWCppCr~e~P~L~~l~~~~---------~~~Vi~Vs~-d------~~~~~-------~-   95 (153)
T TIGR02738        44 GRHANQD----DYALVFFYQSTCPYCHQFAPVLKRFSQQF---------GLPVYAFSL-D------GQGLT-------G-   95 (153)
T ss_pred             chhhhcC----CCEEEEEECCCChhHHHHHHHHHHHHHHc---------CCcEEEEEe-C------CCccc-------c-
Confidence            5666654    4459999999999999999  99999876         378999996 2      11111       1 


Q ss_pred             CceeeccccccChHHHHHHHHhC---CCCCCceEEEECCCCcEEcc
Q 008311          414 PWYTVYHPTLIDRAVIRYVKDVW---HFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       414 PW~aV~fP~l~D~~~~~~L~~~y---~V~~IPtlVVLDpqGkVv~~  456 (570)
                            ||..++... ..+...|   ++.++|++++||++|+++..
T Consensus        96 ------fp~~~~~~~-~~~~~~~~~~~v~~iPTt~LID~~G~~i~~  134 (153)
T TIGR02738        96 ------FPDPLPATP-EVMQTFFPNPRPVVTPATFLVNVNTRKAYP  134 (153)
T ss_pred             ------cccccCCch-HHHHHHhccCCCCCCCeEEEEeCCCCEEEE
Confidence                  222222111 2234455   88999999999999987654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.35  E-value=2.8e-12  Score=126.06  Aligned_cols=109  Identities=12%  Similarity=0.129  Sum_probs=80.7

Q ss_pred             cCCCCCeeeccccCCCEEEE-EEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH-
Q 008311          332 DGSTKRRVNIEVLRRKNVLL-LISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE-  407 (570)
Q Consensus       332 ~g~~G~~Vsls~LkGKvVlL-~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~-  407 (570)
                      .+..| .+++++++||+|+| +||++|||+|..++  |.+.|+++++      .+++||+||+ |     +......|. 
T Consensus        14 ~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~------~~~~vi~vS~-D-----~~~~~~~w~~   80 (202)
T PRK13190         14 NTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK------LGVELVGLSV-D-----SIYSHIAWLR   80 (202)
T ss_pred             ecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHHHH
Confidence            34455 69999999997766 69999999999999  9999999973      4799999996 2     122333443 


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~  456 (570)
                      .+..+.. ..++||.+.|.  .+.+.+.||+.      .+|.++||||+|+|...
T Consensus        81 ~~~~~~g-~~~~fPll~D~--~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~  132 (202)
T PRK13190         81 DIEERFG-IKIPFPVIADI--DKELAREYNLIDENSGATVRGVFIIDPNQIVRWM  132 (202)
T ss_pred             hHHHhcC-CCceEEEEECC--ChHHHHHcCCccccCCcEEeEEEEECCCCEEEEE
Confidence            2222221 12567777776  35788999984      58999999999999854

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.35  E-value=3e-12  Score=127.28  Aligned_cols=112  Identities=13%  Similarity=0.044  Sum_probs=86.2

Q ss_pred             ccCCCCCeeeccccCCCE-EEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          331 VDGSTKRRVNIEVLRRKN-VLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkGKv-VlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      +.+.+|+.+.+++++||+ |+++|||.|||+|..++  |.++|+++++      .+++||+||+ |     +......|.
T Consensus        13 l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~------~gv~vigIS~-D-----~~~~~~~w~   80 (215)
T PRK13599         13 VVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKE------LNTELIGLSV-D-----QVFSHIKWV   80 (215)
T ss_pred             eECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHHH
Confidence            455688887778999997 47899999999999999  9999999973      4799999996 3     233455665


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCCC-------CCceEEEECCCCcEEcc
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-------~IPtlVVLDpqGkVv~~  456 (570)
                      ++.+++-=..++||.+.|..  +.+.+.||+.       .+|+++||||+|+|+..
T Consensus        81 ~~i~~~~~~~i~fPil~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~  134 (215)
T PRK13599         81 EWIKDNTNIAIPFPVIADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI  134 (215)
T ss_pred             HhHHHhcCCCCceeEEECCC--chHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence            54332211356788887753  4688899973       68999999999999876

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.33  E-value=7.3e-13  Score=125.04  Aligned_cols=66  Identities=18%  Similarity=0.195  Sum_probs=57.1

Q ss_pred             ccccCCeEEEEEecCC-CchHHHHHHHHHHHHhh---CCCCEEEEEEecCCchhhhhhcccc--cccccccc
Q 008311          501 DWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANT---ARIPLEMVYVGKSTKRDKCGESWQP--LQLKSLVT  566 (570)
Q Consensus       501 ~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~---~~~~fEiv~Vs~d~~~e~~~~~~~~--~~~~~~~~  566 (570)
                      ...++||.|++||||+ |+|||+|||.|+++|++   .+.+|||||||+|++++++..+++.  ++|.-+++
T Consensus        28 ~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf   99 (157)
T KOG2501|consen   28 SEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPF   99 (157)
T ss_pred             hHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecC
Confidence            3468999999999999 99999999999999964   5668999999999999999999984  55555544

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.31  E-value=7.9e-12  Score=127.73  Aligned_cols=140  Identities=14%  Similarity=0.063  Sum_probs=95.2

Q ss_pred             HHHHhhhhcchhhHHHHHHHhhccCCCCCccc--C-CCC--Ceeecccc-CCCEEEEEEe-cCCCHHhHHHH--HHHHHH
Q 008311          301 MLVKLFDSIHIDNMKVLKALIYAKDDLQPLVD--G-STK--RRVNIEVL-RRKNVLLLIS-DLDISQEELSI--LEQIYN  371 (570)
Q Consensus       301 ~l~~lf~~~~~D~~~~Lk~LI~~k~~~~pl~~--g-~~G--~~Vsls~L-kGKvVlL~Fw-AsWCpPCr~e~--L~~iY~  371 (570)
                      +..+.|.+. .+.+.....+.-+.  ..|.|.  + .+|  +.++++++ +||+|+|+|| |.|||+|..++  |.+.|+
T Consensus        50 ~~~~~~~~~-~~~~~~~~~~~vGd--~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~  126 (261)
T PTZ00137         50 NGVRNYSTS-EGLCNTVTSSLVGK--LMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLK  126 (261)
T ss_pred             HHHHhccCC-cccccccccccCCC--CCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence            555666663 33333333333333  344443  2 234  46899997 8988777777 89999999999  999999


Q ss_pred             HHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH-HHcCCCceeeccccccChHHHHHHHHhCCCC-----CCceEE
Q 008311          372 ESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET-LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-----NKPILV  445 (570)
Q Consensus       372 elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~-~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-----~IPtlV  445 (570)
                      ++++      .+++|++||+ |     +....+.|.+ ...+.--..++||.+.|.  ...+.+.||+.     .+|.++
T Consensus       127 ef~~------~gv~VigIS~-D-----s~~~h~aw~~~~~~~~g~~~l~fPlLsD~--~~~iakayGv~~~~g~a~R~tF  192 (261)
T PTZ00137        127 EFEE------RGVKVLGVSV-D-----SPFSHKAWKELDVRQGGVSPLKFPLFSDI--SREVSKSFGLLRDEGFSHRASV  192 (261)
T ss_pred             HHHH------CCCEEEEEEC-C-----CHHHHHHHHhhhhhhccccCcceEEEEcC--ChHHHHHcCCCCcCCceecEEE
Confidence            9973      4799999996 3     1224456654 222222235667777775  36789999985     589999


Q ss_pred             EECCCCcEEccc
Q 008311          446 VLDPQGRVVSPN  457 (570)
Q Consensus       446 VLDpqGkVv~~n  457 (570)
                      |||++|+|+...
T Consensus       193 IID~dG~I~~~~  204 (261)
T PTZ00137        193 LVDKAGVVKHVA  204 (261)
T ss_pred             EECCCCEEEEEE
Confidence            999999998753

>PRK15000 peroxidase; Provisional

Probab=99.31  E-value=9.7e-12  Score=122.25  Aligned_cols=104  Identities=14%  Similarity=0.119  Sum_probs=77.5

Q ss_pred             eecccc-CCCEEEEEEecC-CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH-HHcCC
Q 008311          339 VNIEVL-RRKNVLLLISDL-DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET-LQSSM  413 (570)
Q Consensus       339 Vsls~L-kGKvVlL~FwAs-WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~-~~~~M  413 (570)
                      .+++++ +||+|+|+||+. ||++|..++  |.+.|+++++      .+++||.||+ |     +....+.|.+ +....
T Consensus        26 ~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~------~g~~vigvS~-D-----~~~~~~~w~~~~~~~~   93 (200)
T PRK15000         26 FNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK------RGVEVVGVSF-D-----SEFVHNAWRNTPVDKG   93 (200)
T ss_pred             eeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHHHHHHHHhhHHHhC
Confidence            344444 899999999996 899999999  9999999973      4799999996 3     2333455543 22221


Q ss_pred             CceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311          414 PWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       414 PW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~  456 (570)
                      .=..++||.+.|.  .+.+.+.|++.      ++|.++||||+|+|+..
T Consensus        94 g~~~i~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~  140 (200)
T PRK15000         94 GIGPVKYAMVADV--KREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ  140 (200)
T ss_pred             CccccCceEEECC--CcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence            1013567777776  35788999997      79999999999999875

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.28  E-value=1.6e-11  Score=120.01  Aligned_cols=110  Identities=14%  Similarity=0.136  Sum_probs=81.7

Q ss_pred             CCCCCeeeccccCCCEEEEEEec-CCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH-
Q 008311          333 GSTKRRVNIEVLRRKNVLLLISD-LDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET-  408 (570)
Q Consensus       333 g~~G~~Vsls~LkGKvVlL~FwA-sWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~-  408 (570)
                      +.+|+++++++++||+|+|+||+ .||+.|..++  |.++++++++      .+++||+||. |     +......|.. 
T Consensus        23 ~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~------~g~~vv~IS~-d-----~~~~~~~~~~~   90 (199)
T PTZ00253         23 NGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE------LNCEVLACSM-D-----SEYAHLQWTLQ   90 (199)
T ss_pred             CCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH------cCCEEEEEeC-C-----CHHHHHHHHhC
Confidence            34678999999999999999996 7799999999  9999999973      4799999996 3     1222333321 


Q ss_pred             HHcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311          409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~  456 (570)
                      .....-.-.++||.+.|.  .+.+.+.||+.      ..|.++||||+|+|+..
T Consensus        91 ~~~~~~~~~~~fpll~D~--~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~  142 (199)
T PTZ00253         91 ERKKGGLGTMAIPMLADK--TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQI  142 (199)
T ss_pred             hHhhCCccccccceEECc--HhHHHHHcCCcccCCCceEEEEEEECCCCEEEEE
Confidence            111111113577877785  46788999985      36899999999998863

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.28  E-value=1.3e-11  Score=122.67  Aligned_cols=114  Identities=11%  Similarity=0.104  Sum_probs=82.7

Q ss_pred             CCcc--cCCCCCeeec-cccCCCEEEE-EEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChh
Q 008311          328 QPLV--DGSTKRRVNI-EVLRRKNVLL-LISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDP  401 (570)
Q Consensus       328 ~pl~--~g~~G~~Vsl-s~LkGKvVlL-~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~  401 (570)
                      .|.|  .+.+|+ +.+ +.++||+|+| +|||+||++|..++  |.+.|+++++      .+++|++||+ |     +..
T Consensus        13 aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~------~g~~VigvS~-D-----s~~   79 (215)
T PRK13191         13 FPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK------LNTELIGLSV-D-----SNI   79 (215)
T ss_pred             CCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHH
Confidence            4444  455675 566 5589996555 99999999999999  9999999973      4799999996 3     233


Q ss_pred             hHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCC-------CCceEEEECCCCcEEcc
Q 008311          402 TQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       402 ~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-------~IPtlVVLDpqGkVv~~  456 (570)
                      ..+.|.+...+.-=+.++||.+.|..  +.+.+.||+-       .+|.++|||++|+|...
T Consensus        80 ~h~aw~~~~~~~~~~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~  139 (215)
T PRK13191         80 SHIEWVMWIEKNLKVEVPFPIIADPM--GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI  139 (215)
T ss_pred             HHHHHHhhHHHhcCCCCceEEEECCc--hHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence            44556543221111246678777753  6788899973       47999999999999875

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.24  E-value=3.6e-11  Score=118.11  Aligned_cols=110  Identities=10%  Similarity=0.124  Sum_probs=81.5

Q ss_pred             ccCCCCCeeeccccCC-CE-EEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          331 VDGSTKRRVNIEVLRR-KN-VLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkG-Kv-VlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      +.+.+| .+++++++| |+ |+++|||+|||.|..++  |.++|+++++      .+++|++||+ |     +......|
T Consensus        10 ~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~------~gv~vigvS~-D-----~~~~~~~~   76 (203)
T cd03016          10 ADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK------RNVKLIGLSV-D-----SVESHIKW   76 (203)
T ss_pred             EecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH------cCCEEEEEEC-C-----CHHHHHHH
Confidence            344556 589999999 64 56699999999999999  9999999973      4799999996 2     23334445


Q ss_pred             HH-HHcCCCceeeccccccChHHHHHHHHhCCCC----C----CceEEEECCCCcEEcc
Q 008311          407 ET-LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK----N----KPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~-~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~----~----IPtlVVLDpqGkVv~~  456 (570)
                      .+ ...... ..++||.+.|.  ...+.+.||+.    +    .|.++||||+|+|+..
T Consensus        77 ~~~i~~~~~-~~~~fpil~D~--~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~  132 (203)
T cd03016          77 IEDIEEYTG-VEIPFPIIADP--DREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI  132 (203)
T ss_pred             HhhHHHhcC-CCCceeEEECc--hHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence            43 222223 56778887786  35788899975    3    3569999999999865

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.23  E-value=4.5e-11  Score=116.26  Aligned_cols=55  Identities=15%  Similarity=0.062  Sum_probs=48.6

Q ss_pred             ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH-HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI-LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~-L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      +.+.+|+.+++++++||+|+|+|||+||++|...- |+++|+++++      ++++|++||.
T Consensus        10 ~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~q~~~L~~L~~~y~~------~gl~Vlg~p~   65 (183)
T PRK10606         10 VTTIDGEVTTLEKYAGNVLLIVNVASKCGLTPQYEQLENIQKAWAD------QGFVVLGFPC   65 (183)
T ss_pred             eECCCCCEEeHHHhCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHhh------CCeEEEEeec
Confidence            45678899999999999999999999999997533 9999999973      5799999996

>PRK13189 peroxiredoxin; Provisional

Probab=99.23  E-value=4.2e-11  Score=119.56  Aligned_cols=112  Identities=14%  Similarity=0.163  Sum_probs=80.3

Q ss_pred             CcccCCCCCeeeccc-cCCCE-EEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          329 PLVDGSTKRRVNIEV-LRRKN-VLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       329 pl~~g~~G~~Vsls~-LkGKv-VlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ..+.+.+|+ +++++ ++||+ |+++|||+|||+|..++  |.+.|+++++      .+++||+||+ |     +.....
T Consensus        18 F~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~------~~v~VigvS~-D-----~~~~h~   84 (222)
T PRK13189         18 FEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE------LNTELIGLSI-D-----QVFSHI   84 (222)
T ss_pred             cEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH------cCCEEEEEEC-C-----CHHHHH
Confidence            334455664 67766 69995 55689999999999999  9999999973      4799999996 3     223334


Q ss_pred             HHHH-HHcCCCceeeccccccChHHHHHHHHhCCCC-------CCceEEEECCCCcEEcc
Q 008311          405 KFET-LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~-~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-------~IPtlVVLDpqGkVv~~  456 (570)
                      +|.+ +..... ..++||.+.|.  .+.+.+.||+.       .+|.++||||+|+|...
T Consensus        85 aw~~~~~~~~g-~~i~fPllsD~--~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~  141 (222)
T PRK13189         85 KWVEWIKEKLG-VEIEFPIIADD--RGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI  141 (222)
T ss_pred             HHHHhHHHhcC-cCcceeEEEcC--ccHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence            5543 222111 13567777775  35788899975       57999999999999754

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.16  E-value=1.3e-10  Score=108.25  Aligned_cols=73  Identities=16%  Similarity=0.179  Sum_probs=58.6

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      -+||+|+|+|||+||++|+.+.  |.+++++++       .++.|+.|.+ |       .+  .         |      
T Consensus        18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~-------~~~~~v~v~v-d-------~~--~---------~------   65 (142)
T cd02950          18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG-------DQVNFVMLNV-D-------NP--K---------W------   65 (142)
T ss_pred             hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc-------cCeeEEEEEc-C-------Cc--c---------c------
Confidence            4789999999999999999998  999998884       2478888875 2       11  0         1      


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                              ..+.+.|+|+++|+++++|++|+++.+
T Consensus        66 --------~~~~~~~~V~~iPt~v~~~~~G~~v~~   92 (142)
T cd02950          66 --------LPEIDRYRVDGIPHFVFLDREGNEEGQ   92 (142)
T ss_pred             --------HHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence                    124567999999999999999999865

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.08  E-value=4.3e-10  Score=98.62  Aligned_cols=73  Identities=7%  Similarity=0.015  Sum_probs=54.2

Q ss_pred             ccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311          343 VLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH  420 (570)
Q Consensus       343 ~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f  420 (570)
                      +.+||+|+|+|||+||+||+.++  |.++.++++        ++.++-|++        |++.+                
T Consensus        12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--------~v~~~~vd~--------d~~~~----------------   59 (103)
T cd02985          12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--------DVVFLLVNG--------DENDS----------------   59 (103)
T ss_pred             HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--------CCEEEEEEC--------CCChH----------------
Confidence            34699999999999999999998  888887762        466666663        21110                


Q ss_pred             ccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                              ...+.+.|+|+++||++++ ++|+++.+
T Consensus        60 --------~~~l~~~~~V~~~Pt~~~~-~~G~~v~~   86 (103)
T cd02985          60 --------TMELCRREKIIEVPHFLFY-KDGEKIHE   86 (103)
T ss_pred             --------HHHHHHHcCCCcCCEEEEE-eCCeEEEE
Confidence                    1236677999999997777 89998743

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>TIGR02740 TraF-like TraF-like protein

Probab=99.07  E-value=1.3e-10  Score=119.38  Aligned_cols=91  Identities=15%  Similarity=0.222  Sum_probs=67.5

Q ss_pred             CCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCC
Q 008311          336 KRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSM  413 (570)
Q Consensus       336 G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~M  413 (570)
                      ++...+++++||+++++|||+||++|+.++  |.++++++         +++|++|++ |.     +..        .. 
T Consensus       156 ~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---------g~~Vi~Vsv-D~-----~~~--------~~-  211 (271)
T TIGR02740       156 QKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---------GIEVLPVSV-DG-----GPL--------PG-  211 (271)
T ss_pred             HHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---------CcEEEEEeC-CC-----Ccc--------cc-
Confidence            345788899999999999999999999999  99998876         388999997 31     110        11 


Q ss_pred             CceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccc
Q 008311          414 PWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNAL  459 (570)
Q Consensus       414 PW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~  459 (570)
                            ||.+.+.   ..+.+.|||+++|+++++|++|+.+...+.
T Consensus       212 ------fp~~~~d---~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~  248 (271)
T TIGR02740       212 ------FPNARPD---AGQAQQLKIRTVPAVFLADPDPNQFTPIGF  248 (271)
T ss_pred             ------CCcccCC---HHHHHHcCCCcCCeEEEEECCCCEEEEEEe
Confidence                  2322121   236788999999999999997665554333

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.9e-09  Score=102.48  Aligned_cols=110  Identities=19%  Similarity=0.162  Sum_probs=86.2

Q ss_pred             CCCcccCCCCCeeeccccCCCEEEEEEecC-CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhH
Q 008311          327 LQPLVDGSTKRRVNIEVLRRKNVLLLISDL-DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQ  403 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkGKvVlL~FwAs-WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~  403 (570)
                      |...+.+.+|+.|++++++||.|+|||.-- ++|.|-.|.  +.+.|.++++      -+.+|++||. |     +....
T Consensus        11 PdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~------~~a~V~GIS~-D-----s~~~~   78 (157)
T COG1225          11 PDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK------LGAVVLGISP-D-----SPKSH   78 (157)
T ss_pred             CCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh------CCCEEEEEeC-C-----CHHHH
Confidence            344456889999999999999888888755 799999999  9999999973      4799999995 3     35566


Q ss_pred             HHHHHHHcCCCceeeccccccChHHHHHHHHhCCCC------------CCceEEEECCCCcEEcc
Q 008311          404 KKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       404 ~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------------~IPtlVVLDpqGkVv~~  456 (570)
                      ++|.+-      +.++||-+.|..  +.+.+.||+-            ..++++|||++|+|+..
T Consensus        79 ~~F~~k------~~L~f~LLSD~~--~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~  135 (157)
T COG1225          79 KKFAEK------HGLTFPLLSDED--GEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYV  135 (157)
T ss_pred             HHHHHH------hCCCceeeECCc--HHHHHHhCcccccccCccccccccceEEEECCCCeEEEE
Confidence            788653      345677666763  4688889873            36899999999999764

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=98.94  E-value=2.4e-09  Score=93.81  Aligned_cols=67  Identities=6%  Similarity=-0.017  Sum_probs=51.4

Q ss_pred             cccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311          342 EVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY  419 (570)
Q Consensus       342 s~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~  419 (570)
                      ++++||+|+|+|||+||+||+.++  |.++.++++        ++.++.|..        +.                 .
T Consensus        14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--------~~~~~~vd~--------~~-----------------~   60 (100)
T cd02999          14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP--------QIRHLAIEE--------SS-----------------I   60 (100)
T ss_pred             HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--------cCceEEEEC--------CC-----------------C
Confidence            357999999999999999999998  999988874        355555531        10                 1


Q ss_pred             cccccChHHHHHHHHhCCCCCCceEEEECCC
Q 008311          420 HPTLIDRAVIRYVKDVWHFKNKPILVVLDPQ  450 (570)
Q Consensus       420 fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpq  450 (570)
                      +         ..+.+.|+++++||++++++.
T Consensus        61 ~---------~~l~~~~~V~~~PT~~lf~~g   82 (100)
T cd02999          61 K---------PSLLSRYGVVGFPTILLFNST   82 (100)
T ss_pred             C---------HHHHHhcCCeecCEEEEEcCC
Confidence            1         136678999999999999854

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=98.93  E-value=2e-09  Score=96.80  Aligned_cols=83  Identities=23%  Similarity=0.356  Sum_probs=58.5

Q ss_pred             CC-CEEEEEEecCCCHHhHHHH--H---HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311          345 RR-KNVLLLISDLDISQEELSI--L---EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV  418 (570)
Q Consensus       345 kG-KvVlL~FwAsWCpPCr~e~--L---~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV  418 (570)
                      .| |+|+|+|||+||++|+.+.  +   .++.+.++       ++|.++.|++ |.     +.....|+.          
T Consensus        12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~-d~-----~~~~~~~~~----------   68 (125)
T cd02951          12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-------AHFVVVYINI-DG-----DKEVTDFDG----------   68 (125)
T ss_pred             cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-------hheEEEEEEc-cC-----CceeeccCC----------
Confidence            57 9999999999999999987  4   35666664       2588888886 21     111111211          


Q ss_pred             ccccccChHHHHHHHHhCCCCCCceEEEECCC-CcEEcc
Q 008311          419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQ-GRVVSP  456 (570)
Q Consensus       419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpq-GkVv~~  456 (570)
                          . . .....+...|+++++|+++++|++ |+++.+
T Consensus        69 ----~-~-~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~  101 (125)
T cd02951          69 ----E-A-LSEKELARKYRVRFTPTVIFLDPEGGKEIAR  101 (125)
T ss_pred             ----C-C-ccHHHHHHHcCCccccEEEEEcCCCCceeEE
Confidence                0 0 113568889999999999999999 898864

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=98.89  E-value=8.2e-09  Score=89.78  Aligned_cols=74  Identities=7%  Similarity=0.002  Sum_probs=55.0

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--H---HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311          345 RRKNVLLLISDLDISQEELSI--L---EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY  419 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L---~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~  419 (570)
                      .||+|+|+|||+||+||+.+.  +   .++.+.++       +++.++.|.+       .+.+                 
T Consensus        10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~vd~-------~~~~-----------------   58 (104)
T cd02953          10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK-------KDVVLLRADW-------TKND-----------------   58 (104)
T ss_pred             cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh-------CCeEEEEEec-------CCCC-----------------
Confidence            589999999999999999987  3   46777664       2577777764       1110                 


Q ss_pred             cccccChHHHHHHHHhCCCCCCceEEEECC-CCcEEcc
Q 008311          420 HPTLIDRAVIRYVKDVWHFKNKPILVVLDP-QGRVVSP  456 (570)
Q Consensus       420 fP~l~D~~~~~~L~~~y~V~~IPtlVVLDp-qGkVv~~  456 (570)
                             .....+.++|++.++|+++++++ +|+++.+
T Consensus        59 -------~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~   89 (104)
T cd02953          59 -------PEITALLKRFGVFGPPTYLFYGPGGEPEPLR   89 (104)
T ss_pred             -------HHHHHHHHHcCCCCCCEEEEECCCCCCCCcc
Confidence                   01234677899999999999999 8987643

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=98.87  E-value=8.5e-09  Score=90.12  Aligned_cols=69  Identities=13%  Similarity=0.104  Sum_probs=51.4

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .|++|+|+|||+||+||+..+  |.+++++++      +..+.++-|++        | .                    
T Consensus        16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~------~~~~~~~~vd~--------d-~--------------------   60 (102)
T cd02948          16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELG------DDLLHFATAEA--------D-T--------------------   60 (102)
T ss_pred             cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcC------CCcEEEEEEeC--------C-C--------------------
Confidence            589999999999999999998  989988874      12355555542        2 1                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+++++|+++++ ++|+.+.+
T Consensus        61 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~~   86 (102)
T cd02948          61 -------IDTLKRYRGKCEPTFLFY-KNGELVAV   86 (102)
T ss_pred             -------HHHHHHcCCCcCcEEEEE-ECCEEEEE
Confidence                   013467999999987777 58887754

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=98.86  E-value=1.1e-08  Score=87.25  Aligned_cols=68  Identities=12%  Similarity=0.195  Sum_probs=52.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||+||+...  +.++++.++       ..+.++-|.+        +..                    
T Consensus        11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~-------~~~~~~~vd~--------~~~--------------------   55 (96)
T cd02956          11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ-------GQFVLAKVNC--------DAQ--------------------   55 (96)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhC-------CcEEEEEEec--------cCC--------------------
Confidence            589999999999999999988  888888874       2355555543        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|+++++|++++++ +|+++.
T Consensus        56 -------~~l~~~~~i~~~Pt~~~~~-~g~~~~   80 (96)
T cd02956          56 -------PQIAQQFGVQALPTVYLFA-AGQPVD   80 (96)
T ss_pred             -------HHHHHHcCCCCCCEEEEEe-CCEEee
Confidence                   1366789999999999997 898764

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=98.76  E-value=3.1e-08  Score=88.12  Aligned_cols=72  Identities=13%  Similarity=-0.021  Sum_probs=55.4

Q ss_pred             ccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311          343 VLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH  420 (570)
Q Consensus       343 ~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f  420 (570)
                      ..+||+|+|+|||+||++|+...  +.++.++++.      .++.+.-|++        |..                  
T Consensus        21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~------~~v~~~~vd~--------d~~------------------   68 (111)
T cd02963          21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP------LGVGIATVNA--------GHE------------------   68 (111)
T ss_pred             ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh------cCceEEEEec--------ccc------------------
Confidence            34789999999999999999988  8999998852      2466666653        210                  


Q ss_pred             ccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                               ..+.++|+|+++|++++++ +|+++..
T Consensus        69 ---------~~l~~~~~V~~~Pt~~i~~-~g~~~~~   94 (111)
T cd02963          69 ---------RRLARKLGAHSVPAIVGII-NGQVTFY   94 (111)
T ss_pred             ---------HHHHHHcCCccCCEEEEEE-CCEEEEE
Confidence                     1256779999999999995 8887654

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PHA02278 thioredoxin-like protein

Probab=98.70  E-value=4e-08  Score=87.13  Aligned_cols=73  Identities=14%  Similarity=0.319  Sum_probs=52.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +++.|+|+|||+||+||+...  +.++.+++.       .+..++.|.+ |       .+.  +                
T Consensus        13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-------~~~~~~~vdv-d-------~~~--~----------------   59 (103)
T PHA02278         13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGD-------IKKPILTLNL-D-------AED--V----------------   59 (103)
T ss_pred             CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-------CCceEEEEEC-C-------ccc--c----------------
Confidence            688999999999999999877  777765542       2356788875 1       110  0                


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                        |   ...+.++|+|+++||++++. +|+.+.+
T Consensus        60 --d---~~~l~~~~~I~~iPT~i~fk-~G~~v~~   87 (103)
T PHA02278         60 --D---REKAVKLFDIMSTPVLIGYK-DGQLVKK   87 (103)
T ss_pred             --c---cHHHHHHCCCccccEEEEEE-CCEEEEE
Confidence              1   12367789999999999886 4777654

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.70  E-value=7.2e-08  Score=84.40  Aligned_cols=92  Identities=13%  Similarity=0.183  Sum_probs=55.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhh-HHHHHHHHcCCCceeeccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPT-QKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~-~~~F~~~~~~MPW~aV~fP  421 (570)
                      +||+++++||+.|||.|+.+-  +.+..+ +..   ..+.++.++.+++.      .+++ ...+...... +     .+
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~-----~~   67 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDND-VAR---YLKDDFQVIFVNID------DSRDESEAVLDFDGQ-K-----NV   67 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHH-HHC---EEHCECEEEECESH------SHHHHHHHHHSHTCH-S-----SC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHH-HHH---HhhcCeEEEEEecC------Ccccccccccccccc-h-----hh
Confidence            689999999999999999876  444322 221   11236888988861      1221 1122111111 1     11


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .    .....+.+.|+|++.|+++++|++|+++..
T Consensus        68 ~----~~~~~l~~~~~v~gtPt~~~~d~~G~~v~~   98 (112)
T PF13098_consen   68 R----LSNKELAQRYGVNGTPTIVFLDKDGKIVYR   98 (112)
T ss_dssp             H----HHHHHHHHHTT--SSSEEEECTTTSCEEEE
T ss_pred             h----HHHHHHHHHcCCCccCEEEEEcCCCCEEEE
Confidence            1    124578999999999999999999998853

...

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=98.68  E-value=2.4e-07  Score=89.23  Aligned_cols=118  Identities=15%  Similarity=0.219  Sum_probs=83.2

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCHH-hHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQ-EELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpP-Cr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ...+.+.+|+.+++++++||+++|+|.-+-||. |-..+  |.++.+++++   + +.++++|+||+ |+.-+ +.+..+
T Consensus        34 ~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~---~-~~~v~~v~ISv-DP~~D-Tp~~L~  107 (174)
T PF02630_consen   34 DFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGE---E-GKDVQFVFISV-DPERD-TPEVLK  107 (174)
T ss_dssp             T-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHH---T-TTTEEEEEEES-STTTC--HHHHH
T ss_pred             CcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhh---c-cCceEEEEEEe-CCCCC-CHHHHH
Confidence            455778899999999999999999999999954 88777  9999999975   2 56899999997 53211 123345


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHHHhCCCC----------------CCceEEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK----------------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~----------------~IPtlVVLDpqGkVv~~  456 (570)
                      +|.+.+ .-.|..+.+    +.+..+.+.+.|++.                .-..++++||+|+++..
T Consensus       108 ~Y~~~~-~~~~~~ltg----~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~  170 (174)
T PF02630_consen  108 KYAKKF-GPDFIGLTG----SREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI  170 (174)
T ss_dssp             HHHHCH-TTTCEEEEE----EHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred             HHHHhc-CCCcceeEe----CHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence            555433 235666665    444566777777753                22468899999999753

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=98.68  E-value=7.6e-08  Score=87.16  Aligned_cols=69  Identities=10%  Similarity=0.080  Sum_probs=51.9

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+++|+|+|||+|||||+...  |.++-+++.       +.+.++-|.+        |+.                    
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~-------~~v~f~kVDv--------D~~--------------------   57 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS-------NFAVIYLVDI--------DEV--------------------   57 (114)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcc-------CceEEEEEEC--------CCC--------------------
Confidence            468999999999999999766  777777763       2356666664        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+|+++||++++. +|+.+.+
T Consensus        58 -------~~la~~~~V~~iPTf~~fk-~G~~v~~   83 (114)
T cd02954          58 -------PDFNKMYELYDPPTVMFFF-RNKHMKI   83 (114)
T ss_pred             -------HHHHHHcCCCCCCEEEEEE-CCEEEEE
Confidence                   1367789999999999886 7888865

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.67  E-value=3.7e-08  Score=88.94  Aligned_cols=72  Identities=18%  Similarity=0.199  Sum_probs=47.5

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      -+||+|+|+|||+||+||+...  +.+..+...       .+..+|.|.+ |.     +++  .                
T Consensus        17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-------~~~~fv~v~v-d~-----~~~--~----------------   65 (117)
T cd02959          17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISE-------LSHNFVMVNL-ED-----DEE--P----------------   65 (117)
T ss_pred             HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-------hcCcEEEEEe-cC-----CCC--c----------------
Confidence            4789999999999999999887  555433321       1224566654 10     100  0                


Q ss_pred             cccChHHHHHHHHhCCCCC--CceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKN--KPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~--IPtlVVLDpqGkVv~~  456 (570)
                                ..+.|++.+  +|+++++|++|+++.+
T Consensus        66 ----------~~~~~~~~g~~vPt~~f~~~~Gk~~~~   92 (117)
T cd02959          66 ----------KDEEFSPDGGYIPRILFLDPSGDVHPE   92 (117)
T ss_pred             ----------hhhhcccCCCccceEEEECCCCCCchh
Confidence                      112355554  9999999999999875

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.65  E-value=7.8e-07  Score=88.07  Aligned_cols=165  Identities=10%  Similarity=0.057  Sum_probs=97.0

Q ss_pred             CCCEEEEEEe--cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311          345 RRKNVLLLIS--DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH  420 (570)
Q Consensus       345 kGKvVlL~Fw--AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f  420 (570)
                      .|+.|+++++  |+|||||+...  |.++-+++        ++++|.++.+ |     .|+                   
T Consensus        19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~--------~~~~i~~v~v-d-----~~~-------------------   65 (215)
T TIGR02187        19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVS--------PKLKLEIYDF-D-----TPE-------------------   65 (215)
T ss_pred             CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhC--------CCceEEEEec-C-----Ccc-------------------
Confidence            3555666555  59999999865  55555444        2467777765 1     111                   


Q ss_pred             ccccChHHHHHHHHhCCCCCCceEEEECCCCcEEc--ccc---chhHhhhcCCCCCCCchhHHHHhhhcCccccccccCC
Q 008311          421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS--PNA---LHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGI  495 (570)
Q Consensus       421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~--~na---~~~I~~~G~~aFPFt~~~~e~L~~e~~w~~~ll~d~~  495 (570)
                              ...+.+.|+|.++||+++++. |+.+.  ..|   .+.+..           -.+.+..-..     ....+
T Consensus        66 --------~~~l~~~~~V~~~Pt~~~f~~-g~~~~~~~~G~~~~~~l~~-----------~i~~~~~~~~-----~~~~L  120 (215)
T TIGR02187        66 --------DKEEAEKYGVERVPTTIILEE-GKDGGIRYTGIPAGYEFAA-----------LIEDIVRVSQ-----GEPGL  120 (215)
T ss_pred             --------cHHHHHHcCCCccCEEEEEeC-CeeeEEEEeecCCHHHHHH-----------HHHHHHHhcC-----CCCCC
Confidence                    123677899999999999874 55432  112   111110           0111110000     00011


Q ss_pred             Cccc---cccccCCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          496 DPLV---LDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       496 d~~i---~~~~~egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      ++..   .+...++..|-+|.+..|++|+..-+.+.++..+ ...+.++.|..+...+..+ -+++..+||+++.++
T Consensus       121 ~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~~~~~~~~-~~~V~~vPtl~i~~~  195 (215)
T TIGR02187       121 SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEANENPDLAE-KYGVMSVPKIVINKG  195 (215)
T ss_pred             CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCCCCHHHHH-HhCCccCCEEEEecC
Confidence            1111   1112344556666666699999999888887665 4467777788887776554 579999999998764

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=98.62  E-value=9.1e-08  Score=83.46  Aligned_cols=65  Identities=9%  Similarity=-0.007  Sum_probs=47.6

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++++|+|+|||+||+||+...  |.+++++++.   + +.++.+.-+..        +.                  +  
T Consensus        14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~---~-~~~~~~~~vd~--------~~------------------~--   61 (104)
T cd03000          14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKS---S-GSPVRVGKLDA--------TA------------------Y--   61 (104)
T ss_pred             cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHh---c-CCcEEEEEEEC--------cc------------------C--
Confidence            567999999999999999998  9999998863   1 22344444432        10                  1  


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEEC
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLD  448 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLD  448 (570)
                             ..+.+.|+++++|++++++
T Consensus        62 -------~~~~~~~~I~~~Pt~~l~~   80 (104)
T cd03000          62 -------SSIASEFGVRGYPTIKLLK   80 (104)
T ss_pred             -------HhHHhhcCCccccEEEEEc
Confidence                   1256679999999999994

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=98.62  E-value=1.3e-07  Score=86.29  Aligned_cols=80  Identities=11%  Similarity=0.134  Sum_probs=59.0

Q ss_pred             CCCEEEEEEec-------CCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCc
Q 008311          345 RRKNVLLLISD-------LDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPW  415 (570)
Q Consensus       345 kGKvVlL~FwA-------sWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW  415 (570)
                      +||+|+|+|||       +|||||+...  |.++.++++       .++.++-|.+ |....                 |
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-------~~v~fv~Vdv-d~~~~-----------------w   74 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-------EDCVFIYCDV-GDRPY-----------------W   74 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-------CCCEEEEEEc-CCccc-----------------c
Confidence            68999999999       9999999887  999988874       2477888875 21111                 1


Q ss_pred             eeeccccccChHHHHHHHHhCCCC-CCceEEEECCCCcEEccccc
Q 008311          416 YTVYHPTLIDRAVIRYVKDVWHFK-NKPILVVLDPQGRVVSPNAL  459 (570)
Q Consensus       416 ~aV~fP~l~D~~~~~~L~~~y~V~-~IPtlVVLDpqGkVv~~na~  459 (570)
                      .        |.  ...++..|++. ++||+++++..++++..+..
T Consensus        75 ~--------d~--~~~~~~~~~I~~~iPT~~~~~~~~~l~~~~c~  109 (119)
T cd02952          75 R--------DP--NNPFRTDPKLTTGVPTLLRWKTPQRLVEDECL  109 (119)
T ss_pred             c--------Cc--chhhHhccCcccCCCEEEEEcCCceecchhhc
Confidence            1        11  12366789998 99999999888888776643

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PRK09381 trxA thioredoxin; Provisional

Probab=98.61  E-value=1.7e-07  Score=82.04  Aligned_cols=69  Identities=16%  Similarity=0.206  Sum_probs=53.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+++|+|+||++|||+|+...  +.++.++++       .++.+..|.+        +..                    
T Consensus        20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~-------~~~~~~~vd~--------~~~--------------------   64 (109)
T PRK09381         20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-------GKLTVAKLNI--------DQN--------------------   64 (109)
T ss_pred             CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhC-------CCcEEEEEEC--------CCC--------------------
Confidence            378999999999999999998  999999884       2477777764        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|++++.|+++++ ++|+++..
T Consensus        65 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~~   90 (109)
T PRK09381         65 -------PGTAPKYGIRGIPTLLLF-KNGEVAAT   90 (109)
T ss_pred             -------hhHHHhCCCCcCCEEEEE-eCCeEEEE
Confidence                   013456899999999999 68988753

>PRK10996 thioredoxin 2; Provisional

Probab=98.60  E-value=1.7e-07  Score=86.84  Aligned_cols=69  Identities=13%  Similarity=0.168  Sum_probs=52.6

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||++|+.+.  |.+++++++       .++.++-|.+        +..                    
T Consensus        51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~-------~~v~~~~vd~--------~~~--------------------   95 (139)
T PRK10996         51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS-------GKVRFVKVNT--------EAE--------------------   95 (139)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC-------CCeEEEEEeC--------CCC--------------------
Confidence            589999999999999999988  888888764       2455555542        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+|+++|++++++ +|+++..
T Consensus        96 -------~~l~~~~~V~~~Ptlii~~-~G~~v~~  121 (139)
T PRK10996         96 -------RELSARFRIRSIPTIMIFK-NGQVVDM  121 (139)
T ss_pred             -------HHHHHhcCCCccCEEEEEE-CCEEEEE
Confidence                   1356789999999998885 8998764

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.60  E-value=2.4e-07  Score=84.98  Aligned_cols=79  Identities=10%  Similarity=0.064  Sum_probs=53.0

Q ss_pred             CCCEEEEEEecCCCHHhHHHH-----HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311          345 RRKNVLLLISDLDISQEELSI-----LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY  419 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~-----L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~  419 (570)
                      +||+|+|+|+|.||++|+..-     -.++.+.+.       ++|..|-|.+        ++..+ ....          
T Consensus        14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-------~~fv~VkvD~--------~~~~~-~~~~----------   67 (124)
T cd02955          14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-------ENFVPIKVDR--------EERPD-VDKI----------   67 (124)
T ss_pred             cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-------CCEEEEEEeC--------CcCcH-HHHH----------
Confidence            689999999999999999764     235555553       2576665543        11111 1110          


Q ss_pred             cccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccc
Q 008311          420 HPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       420 fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~n  457 (570)
                              ........|++.|.|+++++||+|++++..
T Consensus        68 --------~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~   97 (124)
T cd02955          68 --------YMNAAQAMTGQGGWPLNVFLTPDLKPFFGG   97 (124)
T ss_pred             --------HHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence                    112234478999999999999999999864

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=98.59  E-value=2e-07  Score=82.31  Aligned_cols=69  Identities=14%  Similarity=0.186  Sum_probs=51.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||+||+...  +.++.++++      +.++.+..|..        |.+                    
T Consensus        20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~------~~~~~~~~vd~--------d~~--------------------   65 (109)
T cd02993          20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLA------GSNVKVAKFNA--------DGE--------------------   65 (109)
T ss_pred             cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhc------cCCeEEEEEEC--------Ccc--------------------
Confidence            579999999999999999998  888888885      23577777764        210                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGR  452 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGk  452 (570)
                        +   .....+.|+++++|+++++++.|+
T Consensus        66 --~---~~~~~~~~~v~~~Pti~~f~~~~~   90 (109)
T cd02993          66 --Q---REFAKEELQLKSFPTILFFPKNSR   90 (109)
T ss_pred             --c---hhhHHhhcCCCcCCEEEEEcCCCC
Confidence              0   011234589999999999988765

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.58  E-value=1.5e-07  Score=81.41  Aligned_cols=68  Identities=12%  Similarity=0.005  Sum_probs=51.5

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      .++++|+|+|||+||++|+...  +.++.++++       ..+.+..|++        |+.                   
T Consensus        16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~-------~~~~~~~vd~--------~~~-------------------   61 (101)
T cd03003          16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD-------GVIRIGAVNC--------GDD-------------------   61 (101)
T ss_pred             cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc-------CceEEEEEeC--------Ccc-------------------
Confidence            4679999999999999999987  888888874       2466666654        111                   


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                              ..+.++|+++++|+++++ ++|+.+
T Consensus        62 --------~~~~~~~~v~~~Pt~~~~-~~g~~~   85 (101)
T cd03003          62 --------RMLCRSQGVNSYPSLYVF-PSGMNP   85 (101)
T ss_pred             --------HHHHHHcCCCccCEEEEE-cCCCCc
Confidence                    125667899999999999 678753

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=98.58  E-value=1.9e-07  Score=81.27  Aligned_cols=68  Identities=12%  Similarity=0.050  Sum_probs=52.6

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .|++|+|+|||+||++|+.+.  +.++.++++       ..+.++.|+.        +.+.                   
T Consensus        17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-------~~~~~~~v~~--------~~~~-------------------   62 (109)
T cd03002          17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD-------GLVQVAAVDC--------DEDK-------------------   62 (109)
T ss_pred             CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc-------CCceEEEEec--------Cccc-------------------
Confidence            478899999999999999987  888888774       2477787774        2110                   


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGR  452 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGk  452 (570)
                            ...+.+.|+++++|+++++++.|+
T Consensus        63 ------~~~~~~~~~i~~~Pt~~~~~~~~~   86 (109)
T cd03002          63 ------NKPLCGKYGVQGFPTLKVFRPPKK   86 (109)
T ss_pred             ------cHHHHHHcCCCcCCEEEEEeCCCc
Confidence                  123567799999999999998874

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=98.58  E-value=1.3e-07  Score=81.00  Aligned_cols=67  Identities=12%  Similarity=0.125  Sum_probs=49.7

Q ss_pred             EEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccccC
Q 008311          348 NVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLID  425 (570)
Q Consensus       348 vVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D  425 (570)
                      .|+|+|||+||++|+.+.  +.+++++++.    ...++.++.|..        +..                       
T Consensus        18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~~~~~vd~--------~~~-----------------------   62 (102)
T cd03005          18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNN----ENPSVKIAKVDC--------TQH-----------------------   62 (102)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhc----cCCcEEEEEEEC--------CCC-----------------------
Confidence            499999999999999998  9999999862    123566665542        100                       


Q ss_pred             hHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          426 RAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       426 ~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                          ..+.+.|+++++|+++++ ++|+.+
T Consensus        63 ----~~~~~~~~v~~~Pt~~~~-~~g~~~   86 (102)
T cd03005          63 ----RELCSEFQVRGYPTLLLF-KDGEKV   86 (102)
T ss_pred             ----hhhHhhcCCCcCCEEEEE-eCCCee
Confidence                125567999999999999 677754

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>PTZ00051 thioredoxin; Provisional

Probab=98.55  E-value=1.7e-07  Score=80.08  Aligned_cols=68  Identities=16%  Similarity=0.140  Sum_probs=49.1

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .++.|+|+|||+||++|+.+.  |.++.+++.        ++.++.|..        ++                     
T Consensus        17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--------~~~~~~vd~--------~~---------------------   59 (98)
T PTZ00051         17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--------KMVFVKVDV--------DE---------------------   59 (98)
T ss_pred             cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--------CcEEEEEEC--------cc---------------------
Confidence            478999999999999999998  777777542        344444431        10                     


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                            ...+.+.|+++++|+++++ ++|+++..
T Consensus        60 ------~~~~~~~~~v~~~Pt~~~~-~~g~~~~~   86 (98)
T PTZ00051         60 ------LSEVAEKENITSMPTFKVF-KNGSVVDT   86 (98)
T ss_pred             ------hHHHHHHCCCceeeEEEEE-eCCeEEEE
Confidence                  0135677999999997766 79988754

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=98.53  E-value=3.9e-07  Score=78.55  Aligned_cols=67  Identities=9%  Similarity=0.018  Sum_probs=48.1

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      ++|+ ++|+|||+||+||+.+.  +.++.++++      +.++.+..|..        ++.                   
T Consensus        15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~------~~~v~~~~vd~--------~~~-------------------   60 (101)
T cd02994          15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSD------DLGINVAKVDV--------TQE-------------------   60 (101)
T ss_pred             hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhc------cCCeEEEEEEc--------cCC-------------------
Confidence            4676 57999999999999988  888877653      22455555542        110                   


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                              ..+.++|+++++|+++++ ++|++
T Consensus        61 --------~~~~~~~~i~~~Pt~~~~-~~g~~   83 (101)
T cd02994          61 --------PGLSGRFFVTALPTIYHA-KDGVF   83 (101)
T ss_pred             --------HhHHHHcCCcccCEEEEe-CCCCE
Confidence                    125567999999999887 78875

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=98.52  E-value=4.1e-07  Score=77.42  Aligned_cols=71  Identities=10%  Similarity=0.069  Sum_probs=53.0

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +|++++|+||++||++|+.+.  +.++.+.++.     +.++.++.+..        ++.                    
T Consensus        12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~-----~~~~~~~~~d~--------~~~--------------------   58 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG-----DPDIVLAKVDA--------TAE--------------------   58 (102)
T ss_pred             cCCcEEEEEECCCCHHHHhhChHHHHHHHHhcc-----CCceEEEEEEc--------cch--------------------
Confidence            789999999999999999987  8888887752     22455555542        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|+++++|++++++++|.+..
T Consensus        59 -------~~~~~~~~i~~~P~~~~~~~~~~~~~   84 (102)
T TIGR01126        59 -------KDLASRFGVSGFPTIKFFPKGKKPVD   84 (102)
T ss_pred             -------HHHHHhCCCCcCCEEEEecCCCccee
Confidence                   13567799999999999998887433

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=98.52  E-value=4.4e-07  Score=78.29  Aligned_cols=68  Identities=15%  Similarity=0.188  Sum_probs=52.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+|+|+++||++||++|+...  |.++.++++       .++.++.|++        |++                    
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-------~~v~~~~id~--------d~~--------------------   56 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD-------GAVHFVEIDI--------DED--------------------   56 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC-------CceEEEEEEC--------CCC--------------------
Confidence            578999999999999999998  888888774       2466666653        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|++.++|++++++ +|+++.
T Consensus        57 -------~~l~~~~~v~~vPt~~i~~-~g~~v~   81 (97)
T cd02949          57 -------QEIAEAAGIMGTPTVQFFK-DKELVK   81 (97)
T ss_pred             -------HHHHHHCCCeeccEEEEEE-CCeEEE
Confidence                   1245678999999999995 788874

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.49  E-value=4.4e-07  Score=77.80  Aligned_cols=71  Identities=14%  Similarity=0.174  Sum_probs=49.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++++++|+|||+||++|+.+.  +.++.++++.     ...+.++.|..        +.+                ..  
T Consensus        16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-----~~~~~~~~id~--------~~~----------------~~--   64 (104)
T cd02997          16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-----DGKGVLAAVDC--------TKP----------------EH--   64 (104)
T ss_pred             hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-----CCceEEEEEEC--------CCC----------------cc--
Confidence            577999999999999999998  8888888852     12344444442        110                01  


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                             ..+.+.|+++++|+++++ ++|+++
T Consensus        65 -------~~~~~~~~i~~~Pt~~~~-~~g~~~   88 (104)
T cd02997          65 -------DALKEEYNVKGFPTFKYF-ENGKFV   88 (104)
T ss_pred             -------HHHHHhCCCccccEEEEE-eCCCee
Confidence                   125677899999997766 478764

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.49  E-value=6.7e-07  Score=77.51  Aligned_cols=68  Identities=7%  Similarity=-0.000  Sum_probs=50.4

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+++|+|+|||+||++|+.+.  +.++.++++       ..+.+.-|..        ++                     
T Consensus        18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-------~~~~~~~vd~--------~~---------------------   61 (104)
T cd03004          18 RKEPWLVDFYAPWCGPCQALLPELRKAARALK-------GKVKVGSVDC--------QK---------------------   61 (104)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCcEEEEEEC--------Cc---------------------
Confidence            467999999999999999988  878777763       2455666553        11                     


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                            ...+.+.|+++++|++++++..|+.+
T Consensus        62 ------~~~~~~~~~i~~~Pt~~~~~~g~~~~   87 (104)
T cd03004          62 ------YESLCQQANIRAYPTIRLYPGNASKY   87 (104)
T ss_pred             ------hHHHHHHcCCCcccEEEEEcCCCCCc
Confidence                  11356779999999999998764543

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=98.49  E-value=6e-07  Score=85.13  Aligned_cols=78  Identities=13%  Similarity=0.051  Sum_probs=53.5

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++++|+|+|||+||+||+...  +.++.++++      +.++.++-|.+        |+..+--++           |  
T Consensus        46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~------~~~v~f~~VDv--------d~~~~la~~-----------~--   98 (152)
T cd02962          46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYN------NNNLKFGKIDI--------GRFPNVAEK-----------F--   98 (152)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcc------cCCeEEEEEEC--------CCCHHHHHH-----------c--
Confidence            468999999999999999988  888888774      23588888875        222111111           0  


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcccc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNA  458 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na  458 (570)
                              .+...|+++++||++++. +|+.+.+-.
T Consensus        99 --------~V~~~~~v~~~PT~ilf~-~Gk~v~r~~  125 (152)
T cd02962          99 --------RVSTSPLSKQLPTIILFQ-GGKEVARRP  125 (152)
T ss_pred             --------CceecCCcCCCCEEEEEE-CCEEEEEEe
Confidence                    122235666799999885 898886533

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.47  E-value=5.1e-07  Score=76.87  Aligned_cols=68  Identities=13%  Similarity=0.154  Sum_probs=49.6

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      +|+|+++|||+||++|+...  |.++.+++.       .++.++.|..        ++                      
T Consensus        14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-------~~i~~~~vd~--------~~----------------------   56 (97)
T cd02984          14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-------PSVLFLSIEA--------EE----------------------   56 (97)
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-------CceEEEEEcc--------cc----------------------
Confidence            79999999999999999887  777777652       2344444431        10                      


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                           ...+.+.|++.+.|++++++ +|+++.+
T Consensus        57 -----~~~~~~~~~i~~~Pt~~~~~-~g~~~~~   83 (97)
T cd02984          57 -----LPEISEKFEITAVPTFVFFR-NGTIVDR   83 (97)
T ss_pred             -----CHHHHHhcCCccccEEEEEE-CCEEEEE
Confidence                 01356779999999999995 8988754

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.45  E-value=5.9e-07  Score=78.75  Aligned_cols=73  Identities=11%  Similarity=0.072  Sum_probs=50.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+++|+|+|||+||++|+.+.  +.++.++++++. ....++.+..|..        |.                     
T Consensus        17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~-~~~~~~~~~~vd~--------d~---------------------   66 (108)
T cd02996          17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEF-PDAGKVVWGKVDC--------DK---------------------   66 (108)
T ss_pred             cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhcc-CCCCcEEEEEEEC--------CC---------------------
Confidence            358999999999999999998  888888886311 0011344444432        11                     


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                            ...+.++|+++++|+++++ ++|++.
T Consensus        67 ------~~~l~~~~~v~~~Ptl~~~-~~g~~~   91 (108)
T cd02996          67 ------ESDIADRYRINKYPTLKLF-RNGMMM   91 (108)
T ss_pred             ------CHHHHHhCCCCcCCEEEEE-eCCcCc
Confidence                  0236778999999999999 678743

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PTZ00062 glutaredoxin; Provisional

Probab=98.43  E-value=1.9e-06  Score=85.44  Aligned_cols=145  Identities=10%  Similarity=0.148  Sum_probs=82.7

Q ss_pred             CEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccccc
Q 008311          347 KNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLI  424 (570)
Q Consensus       347 KvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~  424 (570)
                      +.++|+|||+|||||+.-.  |.++-+++.        +  +.|+.+        |++                      
T Consensus        18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--------~--~~F~~V--------~~d----------------------   57 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP--------S--LEFYVV--------NLA----------------------   57 (204)
T ss_pred             CcEEEEEeCCCCcchHHHHHHHHHHHHHCC--------C--cEEEEE--------ccc----------------------
Confidence            4579999999999999766  777766652        2  455554        111                      


Q ss_pred             ChHHHHHHHHhCCCCCCceEEEECCCCcEEcc----ccchhHh---hhcCCCCCCCchhHHHHhhhcCccccccccCCCc
Q 008311          425 DRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP----NALHMMW---IWGSNAFPFTSLREEALWKEETWRLELLVDGIDP  497 (570)
Q Consensus       425 D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~----na~~~I~---~~G~~aFPFt~~~~e~L~~e~~w~~~ll~d~~d~  497 (570)
                                 |+|.++|+.+++. +|+++.+    |+..+..   .|-..      ...++               ...
T Consensus        58 -----------~~V~~vPtfv~~~-~g~~i~r~~G~~~~~~~~~~~~~~~~------~~~~~---------------~~~  104 (204)
T PTZ00062         58 -----------DANNEYGVFEFYQ-NSQLINSLEGCNTSTLVSFIRGWAQK------GSSED---------------TVE  104 (204)
T ss_pred             -----------cCcccceEEEEEE-CCEEEeeeeCCCHHHHHHHHHHHcCC------CCHHH---------------HHH
Confidence                       7889999999995 7777664    3333221   11110      00000               011


Q ss_pred             cccccccCCeEEEEE--ecC---CCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311          498 LVLDWIKEGKYIFLY--GGD---DVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       498 ~i~~~~~egk~I~lY--fga---d~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      .+.+.+.+ +-|.+|  |..   .|++|+    +++++.++.+++++.+=+..|.. ++.+++.-+--..|.+.+.|+
T Consensus       105 ~v~~li~~-~~Vvvf~Kg~~~~p~C~~C~----~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~  177 (204)
T PTZ00062        105 KIERLIRN-HKILLFMKGSKTFPFCRFSN----AVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGE  177 (204)
T ss_pred             HHHHHHhc-CCEEEEEccCCCCCCChhHH----HHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCE
Confidence            12222223 334444  533   377774    56666677799999888876532 123333333345577777775

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=98.43  E-value=9.6e-07  Score=83.42  Aligned_cols=103  Identities=15%  Similarity=0.133  Sum_probs=75.5

Q ss_pred             CCCeeeccc-cCCC-EEEEEEecCCCHHhHHH-H--HHHHHHHHhhhhhccCCCe-EEEEEecccCCCCCChhhHHHHHH
Q 008311          335 TKRRVNIEV-LRRK-NVLLLISDLDISQEELS-I--LEQIYNESRLHLTRQESHY-EVVWIPIVDHFIHWDDPTQKKFET  408 (570)
Q Consensus       335 ~G~~Vsls~-LkGK-vVlL~FwAsWCpPCr~e-~--L~~iY~elk~~~~k~~~~f-EIV~IsIvD~s~~w~D~~~~~F~~  408 (570)
                      +|+.+++++ ++|| +|+++|.+.|||.|..+ +  +.+.|+++++      .+. +|+.||. |     +....++|.+
T Consensus        17 ~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~------~g~~~V~~iS~-D-----~~~~~~~~~~   84 (155)
T cd03013          17 PPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA------KGVDEVICVSV-N-----DPFVMKAWGK   84 (155)
T ss_pred             CCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH------CCCCEEEEEEC-C-----CHHHHHHHHH
Confidence            488999999 5885 67778889999999999 8  9999999973      367 6999996 2     2445566754


Q ss_pred             HHcCCCceeeccccccChHHHHHHHHhCCCC------C-----CceEEEECCCCcEEcc
Q 008311          409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------N-----KPILVVLDPQGRVVSP  456 (570)
Q Consensus       409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~-----IPtlVVLDpqGkVv~~  456 (570)
                      -.. .   .++||.+.|.  .+.+.+.||+.      +     ...++||| +|+|+..
T Consensus        85 ~~~-~---~~~f~lLsD~--~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~  136 (155)
T cd03013          85 ALG-A---KDKIRFLADG--NGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL  136 (155)
T ss_pred             hhC-C---CCcEEEEECC--CHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence            322 1   1356666675  46788899872      2     36789999 6999864

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=98.38  E-value=2.1e-06  Score=76.89  Aligned_cols=75  Identities=8%  Similarity=-0.026  Sum_probs=51.1

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      +|+|+++|||+||++|+.+.  +.++.++++++    ...+.+.-|+.        +.+.                    
T Consensus        19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~----~~~v~~~~vd~--------~~~~--------------------   66 (114)
T cd02992          19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW----RPVVRVAAVDC--------ADEE--------------------   66 (114)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc----CCceEEEEEec--------cchh--------------------
Confidence            47999999999999999998  88888888631    12344444431        1100                    


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCcEEcccc
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNA  458 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na  458 (570)
                           ...+.+.|+++++|+++++.+.+ ....+|
T Consensus        67 -----~~~~~~~~~i~~~Pt~~lf~~~~-~~~~~~   95 (114)
T cd02992          67 -----NVALCRDFGVTGYPTLRYFPPFS-KEATDG   95 (114)
T ss_pred             -----hHHHHHhCCCCCCCEEEEECCCC-ccCCCC
Confidence                 12356779999999999996655 444433

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>TIGR01068 thioredoxin thioredoxin

Probab=98.36  E-value=1.8e-06  Score=73.07  Aligned_cols=67  Identities=18%  Similarity=0.243  Sum_probs=50.9

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      +|.|+|+||++||++|+.+.  |.++.+++.       .++.++.|..        +..                     
T Consensus        14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~--------~~~---------------------   57 (101)
T TIGR01068        14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-------GKVKFVKLNV--------DEN---------------------   57 (101)
T ss_pred             CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-------CCeEEEEEEC--------CCC---------------------
Confidence            57999999999999999988  888877763       2577777753        111                     


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                            ..+.+.|++.++|+++++ ++|+++.
T Consensus        58 ------~~~~~~~~v~~~P~~~~~-~~g~~~~   82 (101)
T TIGR01068        58 ------PDIAAKYGIRSIPTLLLF-KNGKEVD   82 (101)
T ss_pred             ------HHHHHHcCCCcCCEEEEE-eCCcEee
Confidence                  124567899999999999 6787653

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=98.34  E-value=1.6e-06  Score=74.11  Aligned_cols=68  Identities=12%  Similarity=0.070  Sum_probs=50.4

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      ||+|+++|||+||++|+.+.  +.++.++++.     ..++.++-+..        +..                 .   
T Consensus        18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-----~~~~~~~~id~--------~~~-----------------~---   64 (105)
T cd02998          18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-----EDDVVIAKVDA--------DEA-----------------N---   64 (105)
T ss_pred             CCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-----CCCEEEEEEEC--------CCc-----------------c---
Confidence            67999999999999999987  8888888751     23465555542        110                 1   


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCc
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGR  452 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGk  452 (570)
                            ..+.+.|+++++|+++++++.|+
T Consensus        65 ------~~~~~~~~i~~~P~~~~~~~~~~   87 (105)
T cd02998          65 ------KDLAKKYGVSGFPTLKFFPKGST   87 (105)
T ss_pred             ------hhhHHhCCCCCcCEEEEEeCCCC
Confidence                  13566799999999999998764

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=98.33  E-value=1.9e-06  Score=77.76  Aligned_cols=67  Identities=16%  Similarity=0.049  Sum_probs=48.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+++|+|.|||+||+||+...  +.++-++++       +.+.++-|..        |+..                   
T Consensus        28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~-------~~v~~~~Vd~--------d~~~-------------------   73 (113)
T cd03006          28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS-------DQVLFVAINC--------WWPQ-------------------   73 (113)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCeEEEEEEC--------CCCh-------------------
Confidence            568999999999999999988  888888874       2355565553        1110                   


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                             ....++|+|+++||+.++ ++|+.
T Consensus        74 -------~l~~~~~~I~~~PTl~lf-~~g~~   96 (113)
T cd03006          74 -------GKCRKQKHFFYFPVIHLY-YRSRG   96 (113)
T ss_pred             -------HHHHHhcCCcccCEEEEE-ECCcc
Confidence                   112357999999999999 56764

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.30  E-value=3.5e-06  Score=70.41  Aligned_cols=67  Identities=10%  Similarity=0.060  Sum_probs=50.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++++++++||+.||++|+.+.  +.++.+.++.     +.++.++-|+.        ++                     
T Consensus        14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-----~~~~~~~~v~~--------~~---------------------   59 (101)
T cd02961          14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-----DGKVVVAKVDC--------TA---------------------   59 (101)
T ss_pred             CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-----CCceEEEEeec--------cc---------------------
Confidence            456999999999999999998  8888887741     23566665542        11                     


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCC
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQG  451 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqG  451 (570)
                            ...+.+.|+++++|++++++++|
T Consensus        60 ------~~~~~~~~~i~~~Pt~~~~~~~~   82 (101)
T cd02961          60 ------NNDLCSEYGVRGYPTIKLFPNGS   82 (101)
T ss_pred             ------hHHHHHhCCCCCCCEEEEEcCCC
Confidence                  11356779999999999999887

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.28  E-value=5.1e-06  Score=71.20  Aligned_cols=63  Identities=8%  Similarity=-0.019  Sum_probs=47.7

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      +++|+|+|||+||++|+.+.  +.++.++++       ..+.+..+..        ++                      
T Consensus        18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~id~--------~~----------------------   60 (103)
T cd03001          18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK-------GIVKVGAVDA--------DV----------------------   60 (103)
T ss_pred             CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc-------CCceEEEEEC--------cc----------------------
Confidence            56799999999999999998  888887774       2466666642        11                      


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCC
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQ  450 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpq  450 (570)
                           ...+.+.|+++++|+++++++.
T Consensus        61 -----~~~~~~~~~i~~~P~~~~~~~~   82 (103)
T cd03001          61 -----HQSLAQQYGVRGFPTIKVFGAG   82 (103)
T ss_pred             -----hHHHHHHCCCCccCEEEEECCC
Confidence                 0135678999999999999755

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=98.27  E-value=2.4e-06  Score=77.49  Aligned_cols=72  Identities=14%  Similarity=0.133  Sum_probs=51.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCC-eEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESH-YEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~-fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      .+|+|+|.|+|+|||||+.--  |.++-++++        + ..|+-|.+        |+                    
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~--------~~~~f~kVDV--------De--------------------   56 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS--------KMASIYLVDV--------DK--------------------   56 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc--------CceEEEEEec--------cc--------------------
Confidence            689999999999999998765  777777663        3 33444432        11                    


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcC
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGS  467 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~  467 (570)
                             ...+.+.|+++.+|+.+++        .|+.||+-+.|.
T Consensus        57 -------v~dva~~y~I~amPtfvff--------kngkh~~~d~gt   87 (114)
T cd02986          57 -------VPVYTQYFDISYIPSTIFF--------FNGQHMKVDYGS   87 (114)
T ss_pred             -------cHHHHHhcCceeCcEEEEE--------ECCcEEEEecCC
Confidence                   1236777999999999977        566677777774

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=1.7e-06  Score=77.34  Aligned_cols=65  Identities=15%  Similarity=0.133  Sum_probs=47.3

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      +|.|+++|.|+|||||+.--  +.++-.++.        +..++-|++        |+             |        
T Consensus        21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~--------~v~Flkvdv--------de-------------~--------   63 (106)
T KOG0907|consen   21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYP--------DVVFLKVDV--------DE-------------L--------   63 (106)
T ss_pred             CCeEEEEEECCCCcchhhhhhHHHHHHHHCC--------CCEEEEEec--------cc-------------C--------
Confidence            79999999999999999765  666666653        466666664        21             1        


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                            ..+.+.|+++.+||.+++ ++|+.+
T Consensus        64 ------~~~~~~~~V~~~PTf~f~-k~g~~~   87 (106)
T KOG0907|consen   64 ------EEVAKEFNVKAMPTFVFY-KGGEEV   87 (106)
T ss_pred             ------HhHHHhcCceEeeEEEEE-ECCEEE
Confidence                  125677999999999999 455444

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=98.26  E-value=4.1e-06  Score=76.39  Aligned_cols=38  Identities=8%  Similarity=0.123  Sum_probs=31.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      .|+.+++||+++|||||+.+.  |.++-++.         +..|.+|.+
T Consensus        22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---------~~~~y~vdv   61 (122)
T TIGR01295        22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---------KAPIYYIDS   61 (122)
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---------CCcEEEEEC
Confidence            478899999999999999998  88776652         366899986

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.23  E-value=3.1e-06  Score=95.64  Aligned_cols=73  Identities=11%  Similarity=0.037  Sum_probs=52.3

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH---H--HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311          344 LRRKNVLLLISDLDISQEELSI---L--EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV  418 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~---L--~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV  418 (570)
                      -+||+|+|+|||+||++|+...   +  .++.++++        ++.++-|.+       ++.+.               
T Consensus       472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--------~~~~v~vDv-------t~~~~---------------  521 (571)
T PRK00293        472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--------DTVLLQADV-------TANNA---------------  521 (571)
T ss_pred             hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--------CCEEEEEEC-------CCCCh---------------
Confidence            3589999999999999999764   2  45555552        465555553       22110               


Q ss_pred             ccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                               ..+.+.++|++.++|+++++|++|+++.
T Consensus       522 ---------~~~~l~~~~~v~g~Pt~~~~~~~G~~i~  549 (571)
T PRK00293        522 ---------EDVALLKHYNVLGLPTILFFDAQGQEIP  549 (571)
T ss_pred             ---------hhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence                     1234677899999999999999999864

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=1.5e-06  Score=81.91  Aligned_cols=66  Identities=17%  Similarity=0.229  Sum_probs=51.3

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      +.+|++.|||.||+||+...  |+++-.+++       ..|.+.=|.+        |+                  +   
T Consensus        61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~-------g~~k~~kvdt--------D~------------------~---  104 (150)
T KOG0910|consen   61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYA-------GKFKLYKVDT--------DE------------------H---  104 (150)
T ss_pred             CCCEEEEEecCcCccHhHhhHHHHHHHHhhc-------CeEEEEEEcc--------cc------------------c---
Confidence            57999999999999999998  999988885       2477776663        21                  1   


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                            -.+++.|+|+.+|++++++ +|+.+
T Consensus       105 ------~ela~~Y~I~avPtvlvfk-nGe~~  128 (150)
T KOG0910|consen  105 ------PELAEDYEISAVPTVLVFK-NGEKV  128 (150)
T ss_pred             ------cchHhhcceeeeeEEEEEE-CCEEe
Confidence                  1267789999999999985 56655

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.21  E-value=4.8e-06  Score=76.07  Aligned_cols=68  Identities=7%  Similarity=0.032  Sum_probs=48.1

Q ss_pred             CEEEEEEecCCCHH--hHHHH----HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311          347 KNVLLLISDLDISQ--EELSI----LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH  420 (570)
Q Consensus       347 KvVlL~FwAsWCpP--Cr~e~----L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f  420 (570)
                      ++|+++|||.||+|  |+..+    |.++-.++-+     +.++.|+-|.+        |+                   
T Consensus        28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~-----~~~v~~~kVD~--------d~-------------------   75 (120)
T cd03065          28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLE-----DKGIGFGLVDS--------KK-------------------   75 (120)
T ss_pred             ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhh-----cCCCEEEEEeC--------CC-------------------
Confidence            59999999999999  99766    3455444410     23566666653        11                   


Q ss_pred             ccccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                              ...++++|+|+++||++++. +|+++.
T Consensus        76 --------~~~La~~~~I~~iPTl~lfk-~G~~v~  101 (120)
T cd03065          76 --------DAKVAKKLGLDEEDSIYVFK-DDEVIE  101 (120)
T ss_pred             --------CHHHHHHcCCccccEEEEEE-CCEEEE
Confidence                    12377889999999999995 888764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=2.3e-06  Score=88.49  Aligned_cols=68  Identities=16%  Similarity=0.181  Sum_probs=54.0

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      -+-++|+++|||+||+||+..+  |.++-.+++       ..|.++-|++        |+.                   
T Consensus        41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~-------G~f~LakvN~--------D~~-------------------   86 (304)
T COG3118          41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK-------GKFKLAKVNC--------DAE-------------------   86 (304)
T ss_pred             ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC-------CceEEEEecC--------Ccc-------------------
Confidence            3567999999999999999999  999999995       3688888875        211                   


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                              ..+...|||++||+.|++ .+|+.|
T Consensus        87 --------p~vAaqfgiqsIPtV~af-~dGqpV  110 (304)
T COG3118          87 --------PMVAAQFGVQSIPTVYAF-KDGQPV  110 (304)
T ss_pred             --------hhHHHHhCcCcCCeEEEe-eCCcCc
Confidence                    125677999999998877 356655

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=98.17  E-value=5.6e-06  Score=83.27  Aligned_cols=67  Identities=12%  Similarity=0.120  Sum_probs=49.8

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      +++++|+|||+||++|+.+.  +.++.++++       +.+.+.-|..        ++                      
T Consensus        52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~-------~~v~~~~VD~--------~~----------------------   94 (224)
T PTZ00443         52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALK-------GQVNVADLDA--------TR----------------------   94 (224)
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHHHHHHcC-------CCeEEEEecC--------cc----------------------
Confidence            57999999999999999998  888888874       1343333321        11                      


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                           ...+.++|+|+++|++++++ +|+++.
T Consensus        95 -----~~~l~~~~~I~~~PTl~~f~-~G~~v~  120 (224)
T PTZ00443         95 -----ALNLAKRFAIKGYPTLLLFD-KGKMYQ  120 (224)
T ss_pred             -----cHHHHHHcCCCcCCEEEEEE-CCEEEE
Confidence                 01366789999999999998 787764

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=9.6e-06  Score=79.46  Aligned_cols=105  Identities=15%  Similarity=0.172  Sum_probs=80.3

Q ss_pred             CeeeccccCCCEEEEEEecCCC-HHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCC
Q 008311          337 RRVNIEVLRRKNVLLLISDLDI-SQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSM  413 (570)
Q Consensus       337 ~~Vsls~LkGKvVlL~FwAsWC-pPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~M  413 (570)
                      .+++++++.||.++|+|+-.+- +-|-.|+  +.+.|+++++      .+.||++||+ |     +...-.+|.+.-.+.
T Consensus        24 ~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~------~g~eVigvS~-D-----s~fsH~aW~~~~~~~   91 (194)
T COG0450          24 EEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQK------RGVEVIGVST-D-----SVFSHKAWKATIREA   91 (194)
T ss_pred             eEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHH------cCCEEEEEec-C-----cHHHHHHHHhcHHhc
Confidence            3899999999999999998874 5587888  9999999974      4799999996 4     345566776542222


Q ss_pred             Cce-eeccccccChHHHHHHHHhCCCC----C--CceEEEECCCCcEEc
Q 008311          414 PWY-TVYHPTLIDRAVIRYVKDVWHFK----N--KPILVVLDPQGRVVS  455 (570)
Q Consensus       414 PW~-aV~fP~l~D~~~~~~L~~~y~V~----~--IPtlVVLDpqGkVv~  455 (570)
                      .=. .++||.+.|.  .+.+.+.||+-    |  .=.++||||+|+|..
T Consensus        92 ~gi~~i~~PmiaD~--~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~  138 (194)
T COG0450          92 GGIGKIKFPMIADP--KGEIARAYGVLHPEEGLALRGTFIIDPDGVIRH  138 (194)
T ss_pred             CCccceecceEEcC--chhHHHHcCCcccCCCcceeEEEEECCCCeEEE
Confidence            222 3889988775  57899999984    2  346899999999864

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=98.13  E-value=3.1e-06  Score=79.81  Aligned_cols=59  Identities=14%  Similarity=0.171  Sum_probs=51.9

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh--------CCCCEEEEEEecCCchhhhhhccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT--------ARIPLEMVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~--------~~~~fEiv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      ...||.+.|||.|. |+||++|+|.|.++|++        .+.+||+|+||.|.++++++++++.+++
T Consensus        22 ~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~   89 (146)
T cd03008          22 RLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPK   89 (146)
T ss_pred             HhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCC
Confidence            46899999999999 99999999999999964        2346999999999999889999888873

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.13  E-value=1.3e-05  Score=71.30  Aligned_cols=66  Identities=15%  Similarity=0.245  Sum_probs=47.5

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      |+.|+++|||+||+||+...  |.++.+++.        ++.++-|.+        ++                      
T Consensus        24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--------~v~f~~vd~--------~~----------------------   65 (113)
T cd02957          24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP--------ETKFVKINA--------EK----------------------   65 (113)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--------CcEEEEEEc--------hh----------------------
Confidence            68999999999999999876  777766652        344444432        10                      


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                           . .+.+.|+++++|+++++. +|+.+.+
T Consensus        66 -----~-~l~~~~~i~~~Pt~~~f~-~G~~v~~   91 (113)
T cd02957          66 -----A-FLVNYLDIKVLPTLLVYK-NGELIDN   91 (113)
T ss_pred             -----h-HHHHhcCCCcCCEEEEEE-CCEEEEE
Confidence                 1 356679999999988885 6888754

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=98.11  E-value=5.3e-06  Score=70.56  Aligned_cols=61  Identities=13%  Similarity=0.108  Sum_probs=51.7

Q ss_pred             CeEEEEEecCC-CchHHHHHHHHHHHHhhC--CCCEEEEEEecCCchhhhhhccccc--ccccccc
Q 008311          506 GKYIFLYGGDD-VEWVRKFTTAARSVANTA--RIPLEMVYVGKSTKRDKCGESWQPL--QLKSLVT  566 (570)
Q Consensus       506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~--~~~fEiv~Vs~d~~~e~~~~~~~~~--~~~~~~~  566 (570)
                      ||++.|||.+. |++|+++.+.|.++|++.  +.++|+|+||.|+++++++++++..  ++..+..
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~   66 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPF   66 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEET
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEee
Confidence            79999999888 999999999999999764  5999999999999999999998888  5555443

...

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=98.11  E-value=1e-05  Score=76.15  Aligned_cols=67  Identities=4%  Similarity=-0.004  Sum_probs=49.4

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+|+|+|.|||+||+||+...  |.++-++++       +...|+-|.+        |+.                    
T Consensus        22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~-------~~~~~~kVDV--------De~--------------------   66 (142)
T PLN00410         22 EERLVVIRFGHDWDETCMQMDEVLASVAETIK-------NFAVIYLVDI--------TEV--------------------   66 (142)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcC-------CceEEEEEEC--------CCC--------------------
Confidence            568999999999999999886  888887774       2355566654        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                             ..+.+.|++++.|+++++=++|++
T Consensus        67 -------~dla~~y~I~~~~t~~~ffk~g~~   90 (142)
T PLN00410         67 -------PDFNTMYELYDPCTVMFFFRNKHI   90 (142)
T ss_pred             -------HHHHHHcCccCCCcEEEEEECCeE
Confidence                   136677999989888866667764

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.10  E-value=1.7e-05  Score=67.48  Aligned_cols=67  Identities=13%  Similarity=0.135  Sum_probs=50.1

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .++.|+|+|++.||++|+.+.  |.++.++++       .++.++-|..        ++                     
T Consensus        16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~-------~~v~~~~vd~--------~~---------------------   59 (103)
T PF00085_consen   16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYK-------DNVKFAKVDC--------DE---------------------   59 (103)
T ss_dssp             TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTT-------TTSEEEEEET--------TT---------------------
T ss_pred             cCCCEEEEEeCCCCCccccccceecccccccc-------cccccchhhh--------hc---------------------
Confidence            369999999999999999988  888888774       2566666653        10                     


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                            ...+.++|+++++|+++++...+.+
T Consensus        60 ------~~~l~~~~~v~~~Pt~~~~~~g~~~   84 (103)
T PF00085_consen   60 ------NKELCKKYGVKSVPTIIFFKNGKEV   84 (103)
T ss_dssp             ------SHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred             ------cchhhhccCCCCCCEEEEEECCcEE
Confidence                  0236778999999999999654444

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=98.09  E-value=1.6e-05  Score=67.93  Aligned_cols=40  Identities=10%  Similarity=0.040  Sum_probs=31.7

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEe
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIP  390 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~Is  390 (570)
                      ||.|+|+|||+||++|+.+.  +.++.+.+++     ..++.+.-|.
T Consensus        18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-----~~~~~~~~id   59 (104)
T cd02995          18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-----DDNVVIAKMD   59 (104)
T ss_pred             CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-----CCCEEEEEEe
Confidence            58999999999999999988  8888888852     2345555554

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=98.07  E-value=3.5e-05  Score=76.59  Aligned_cols=116  Identities=13%  Similarity=0.203  Sum_probs=83.2

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHH-hHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQ-EELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpP-Cr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ..+.+.+|++++...|+||+++++|.-+-||. |-..+  |.++.+++.+   ..+.++.+|+|++ |+.   .|. .+.
T Consensus        50 f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~---~~~~~v~vv~itv-DPe---rDt-p~~  121 (207)
T COG1999          50 FELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGE---GEGDDVQVVFITV-DPE---RDT-PEV  121 (207)
T ss_pred             eeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcc---ccCCCEEEEEEEE-CCC---CCC-HHH
Confidence            45778899999999999999999999999986 88888  9999999973   2367999999997 531   222 333


Q ss_pred             HHHHHc---CCCceeeccccccChHHHHHHHHhCCCCC---------------CceEEEECCCCcEEcc
Q 008311          406 FETLQS---SMPWYTVYHPTLIDRAVIRYVKDVWHFKN---------------KPILVVLDPQGRVVSP  456 (570)
Q Consensus       406 F~~~~~---~MPW~aV~fP~l~D~~~~~~L~~~y~V~~---------------IPtlVVLDpqGkVv~~  456 (570)
                      .++|..   .-+|..+.-    +.+..+.+.+.|++-.               -...+++|++|++...
T Consensus       122 lk~Y~~~~~~~~~~~ltg----~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~  186 (207)
T COG1999         122 LKKYAELNFDPRWIGLTG----TPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGT  186 (207)
T ss_pred             HHHHhcccCCCCeeeeeC----CHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEE
Confidence            344433   223666654    2345677777777652               2345788888888754

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=98.06  E-value=1.2e-05  Score=72.04  Aligned_cols=68  Identities=10%  Similarity=0.204  Sum_probs=49.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .++.|+++||++||+||+..-  |.++-+++.        ++.++-|.+        ++                     
T Consensus        21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--------~i~f~~Vd~--------~~---------------------   63 (113)
T cd02989          21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL--------ETKFIKVNA--------EK---------------------   63 (113)
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC--------CCEEEEEEc--------cc---------------------
Confidence            357999999999999999776  777776652        355555542        11                     


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                            ...+.+.|+++++|+++++. +|+++.+
T Consensus        64 ------~~~l~~~~~v~~vPt~l~fk-~G~~v~~   90 (113)
T cd02989          64 ------APFLVEKLNIKVLPTVILFK-NGKTVDR   90 (113)
T ss_pred             ------CHHHHHHCCCccCCEEEEEE-CCEEEEE
Confidence                  12367789999999998887 7777753

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=98.04  E-value=1.3e-05  Score=71.77  Aligned_cols=63  Identities=13%  Similarity=0.177  Sum_probs=44.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +++.|+++|||+||+||+...  |.++-.++        +.++++.|.+        |+.                    
T Consensus        21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--------~~i~~~~vd~--------d~~--------------------   64 (113)
T cd02975          21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS--------DKLKLEIYDF--------DED--------------------   64 (113)
T ss_pred             CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc--------CceEEEEEeC--------CcC--------------------
Confidence            355689999999999999765  66665443        2466777764        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCC
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQ  450 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpq  450 (570)
                             ..+.+.|+++++|++++++..
T Consensus        65 -------~~l~~~~~v~~vPt~~i~~~g   85 (113)
T cd02975          65 -------KEKAEKYGVERVPTTIFLQDG   85 (113)
T ss_pred             -------HHHHHHcCCCcCCEEEEEeCC
Confidence                   125677999999999999753

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=98.02  E-value=3.1e-05  Score=74.91  Aligned_cols=87  Identities=15%  Similarity=0.063  Sum_probs=56.9

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      +++|+|+|||+||+||+...  |.++-+++.        .+.++-|.+        ++                      
T Consensus        83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--------~vkF~kVd~--------d~----------------------  124 (175)
T cd02987          83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--------AVKFCKIRA--------SA----------------------  124 (175)
T ss_pred             CcEEEEEEECCCCchHHHHHHHHHHHHHHCC--------CeEEEEEec--------cc----------------------
Confidence            46999999999999999776  777766652        233443332        10                      


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCcEEccc-cchhHhhhcCCCCCCCchhHHHHhh
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPN-ALHMMWIWGSNAFPFTSLREEALWK  482 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~n-a~~~I~~~G~~aFPFt~~~~e~L~~  482 (570)
                           . .+...|+++++||++++- +|+++.+- +.   ...|+.  -|+..+.|..+.
T Consensus       125 -----~-~l~~~f~v~~vPTlllyk-~G~~v~~~vG~---~~~~g~--~f~~~~le~~L~  172 (175)
T cd02987         125 -----T-GASDEFDTDALPALLVYK-GGELIGNFVRV---TEDLGE--DFDAEDLESFLV  172 (175)
T ss_pred             -----h-hhHHhCCCCCCCEEEEEE-CCEEEEEEech---HHhcCC--CCCHHHHHHHHH
Confidence                 0 245568999999998886 68887642 22   233544  566666666654

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PTZ00102 disulphide isomerase; Provisional

Probab=98.02  E-value=5.6e-05  Score=82.36  Aligned_cols=62  Identities=19%  Similarity=0.251  Sum_probs=41.4

Q ss_pred             cCCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..++.+.+|++ +++-.+++.+.+++++++-+.++=.+++..++-...+.+.++....|++++
T Consensus       247 ~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i  308 (477)
T PTZ00102        247 SSGKDLVWFCG-TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLIEEFPGLAY  308 (477)
T ss_pred             cCCccEEEEec-CHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCcccCceEEE
Confidence            45555555554 455567788888888887666655566655554445677777777888775

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=98.01  E-value=1.7e-05  Score=71.70  Aligned_cols=69  Identities=12%  Similarity=0.179  Sum_probs=52.7

Q ss_pred             CCCEEEEEEecCC--CHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311          345 RRKNVLLLISDLD--ISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH  420 (570)
Q Consensus       345 kGKvVlL~FwAsW--CpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f  420 (570)
                      .|.+++|+|||.|  ||+|+...  |.++-+++.       +.+.++-|.+        |+.                  
T Consensus        26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~-------~~v~f~kVdi--------d~~------------------   72 (111)
T cd02965          26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP-------GRFRAAVVGR--------ADE------------------   72 (111)
T ss_pred             CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC-------CcEEEEEEEC--------CCC------------------
Confidence            5678899999997  99999988  888888874       2466666664        110                  


Q ss_pred             ccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                               ..++.+|+|+++||++++. +|+++..
T Consensus        73 ---------~~la~~f~V~sIPTli~fk-dGk~v~~   98 (111)
T cd02965          73 ---------QALAARFGVLRTPALLFFR-DGRYVGV   98 (111)
T ss_pred             ---------HHHHHHcCCCcCCEEEEEE-CCEEEEE
Confidence                     1467789999999998886 6888764

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PTZ00102 disulphide isomerase; Provisional

Probab=97.95  E-value=1.6e-05  Score=86.63  Aligned_cols=69  Identities=12%  Similarity=0.066  Sum_probs=50.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||.|+|+|||+||++|+.+.  +.++.+++++     ...+.+..|..        +..                    
T Consensus       374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~-----~~~v~~~~id~--------~~~--------------------  420 (477)
T PTZ00102        374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD-----NDSIIVAKMNG--------TAN--------------------  420 (477)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc-----CCcEEEEEEEC--------CCC--------------------
Confidence            589999999999999999988  8888777752     23465666653        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                        +     .+.+.|+++++|+++++++.|++
T Consensus       421 --~-----~~~~~~~v~~~Pt~~~~~~~~~~  444 (477)
T PTZ00102        421 --E-----TPLEEFSWSAFPTILFVKAGERT  444 (477)
T ss_pred             --c-----cchhcCCCcccCeEEEEECCCcc
Confidence              0     12345889999999999988775

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=3.4e-05  Score=73.11  Aligned_cols=117  Identities=21%  Similarity=0.226  Sum_probs=80.0

Q ss_pred             ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH-HHHHHHHHhhhhhccCCCeEEEEEecccCC--CCCChhhHHHHH
Q 008311          331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI-LEQIYNESRLHLTRQESHYEVVWIPIVDHF--IHWDDPTQKKFE  407 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~-L~~iY~elk~~~~k~~~~fEIV~IsIvD~s--~~w~D~~~~~F~  407 (570)
                      +.+.+|+.+++++++||+||+-=-||-|+-=-+.- |+.+|+++++      ++|+|++.|-..-.  ..-++++-..|=
T Consensus        10 ~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~------~Gf~VLgFPcNQF~~QEPg~~eEI~~fC   83 (162)
T COG0386          10 VKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQYEGLEALYKKYKD------KGFEVLGFPCNQFGGQEPGSDEEIAKFC   83 (162)
T ss_pred             eeccCCCCccHHHhCCcEEEEEEcccccCCcHhHHHHHHHHHHHhh------CCcEEEeccccccccCCCCCHHHHHHHH
Confidence            45678899999999999999999999998766766 9999999984      58999999963211  111233444453


Q ss_pred             HHHcCCCceeeccccccCh--------HHHHHHHHhCC-------CCCCceEEEECCCCcEEcccc
Q 008311          408 TLQSSMPWYTVYHPTLIDR--------AVIRYVKDVWH-------FKNKPILVVLDPQGRVVSPNA  458 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~--------~~~~~L~~~y~-------V~~IPtlVVLDpqGkVv~~na  458 (570)
                      ...     |.|.||.+--.        +.-+.|++.-.       ++.-=+-++||++|+||.+=+
T Consensus        84 ~~~-----YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~  144 (162)
T COG0386          84 QLN-----YGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS  144 (162)
T ss_pred             Hhc-----cCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence            322     67777753211        22345554432       222336789999999998743

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=97.90  E-value=3e-05  Score=85.57  Aligned_cols=67  Identities=12%  Similarity=0.096  Sum_probs=50.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||+||+...  +.++.++++      +.++.++.|.+        |.+.                   
T Consensus       370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~------~~~v~~~kVdv--------D~~~-------------------  416 (463)
T TIGR00424       370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLA------GSGVKVAKFRA--------DGDQ-------------------  416 (463)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhc------cCCcEEEEEEC--------CCCc-------------------
Confidence            689999999999999999988  888888885      23577777764        2110                   


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCC
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQ  450 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpq  450 (570)
                            .....+.|+|+++||++++...
T Consensus       417 ------~~~~~~~~~I~~~PTii~Fk~g  438 (463)
T TIGR00424       417 ------KEFAKQELQLGSFPTILFFPKH  438 (463)
T ss_pred             ------cHHHHHHcCCCccceEEEEECC
Confidence                  0123456899999999999654

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=97.89  E-value=4e-05  Score=71.12  Aligned_cols=92  Identities=11%  Similarity=0.190  Sum_probs=58.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHH---H--HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311          345 RRKNVLLLISDLDISQEELSI---L--EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY  419 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~---L--~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~  419 (570)
                      +||+|+|+|.+.||++|+..-   +  .++.+.++       ++|  |.|.+..   +++|          ...      
T Consensus        22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-------~~F--v~V~l~~---d~td----------~~~------   73 (130)
T cd02960          22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-------EDF--IMLNLVH---ETTD----------KNL------   73 (130)
T ss_pred             CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-------hCe--EEEEEEe---ccCC----------CCc------
Confidence            689999999999999999876   2  23333332       245  5555411   1111          000      


Q ss_pred             cccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhh
Q 008311          420 HPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKE  483 (570)
Q Consensus       420 fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e  483 (570)
                           ..         .+ .++|+++++|++|+++.+    +.--++...|-+.+.+.+.|...
T Consensus        74 -----~~---------~g-~~vPtivFld~~g~vi~~----i~Gy~~~~~~~y~~~~~~~~~~~  118 (130)
T cd02960          74 -----SP---------DG-QYVPRIMFVDPSLTVRAD----ITGRYSNRLYTYEPADIPLLIEN  118 (130)
T ss_pred             -----Cc---------cC-cccCeEEEECCCCCCccc----ccccccCccceeCcCcHHHHHHH
Confidence                 00         11 368999999999999876    12235566777778877776643

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=97.88  E-value=5.3e-05  Score=61.80  Aligned_cols=65  Identities=15%  Similarity=0.189  Sum_probs=46.9

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      +++++|+||++||++|+...  +.++.++ .       .++.++.|+.        +.                      
T Consensus        10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~-------~~~~~~~i~~--------~~----------------------   51 (93)
T cd02947          10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y-------PKVKFVKVDV--------DE----------------------   51 (93)
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHH-C-------CCceEEEEEC--------CC----------------------
Confidence            38999999999999999877  6666654 1       3577777764        11                      


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                           ...+.+.|++.+.|++++++ +|+++
T Consensus        52 -----~~~~~~~~~v~~~P~~~~~~-~g~~~   76 (93)
T cd02947          52 -----NPELAEEYGVRSIPTFLFFK-NGKEV   76 (93)
T ss_pred             -----ChhHHHhcCcccccEEEEEE-CCEEE
Confidence                 01245568999999999885 56543

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=97.79  E-value=8.8e-05  Score=61.09  Aligned_cols=36  Identities=17%  Similarity=0.177  Sum_probs=28.2

Q ss_pred             EEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          349 VLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       349 VlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      .+..||++||++|+...  |.++.++++       .+++++.|.+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-------~~~~~~~vd~   39 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMG-------DAVEVEYINV   39 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhc-------CceEEEEEeC
Confidence            45679999999999887  888888774       2477777764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=97.74  E-value=0.00011  Score=65.27  Aligned_cols=73  Identities=16%  Similarity=0.241  Sum_probs=49.4

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH---H--HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311          344 LRRKNVLLLISDLDISQEELSI---L--EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV  418 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~---L--~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV  418 (570)
                      -+||.++|||.+.||++|+.+.   |  .++.+.++       ++|-.+.+.+       ++.                 
T Consensus        15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-------~~~v~~~~d~-------~~~-----------------   63 (114)
T cd02958          15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-------ENFIFWQCDI-------DSS-----------------   63 (114)
T ss_pred             hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-------hCEEEEEecC-------CCc-----------------
Confidence            3689999999999999999875   2  34444443       1343333221       110                 


Q ss_pred             ccccccChHHHHHHHHhCCCCCCceEEEECC-CCcEEcc
Q 008311          419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDP-QGRVVSP  456 (570)
Q Consensus       419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDp-qGkVv~~  456 (570)
                              + ...+.+.|++.+.|+++++|| +|+++.+
T Consensus        64 --------e-~~~~~~~~~~~~~P~~~~i~~~~g~~l~~   93 (114)
T cd02958          64 --------E-GQRFLQSYKVDKYPHIAIIDPRTGEVLKV   93 (114)
T ss_pred             --------c-HHHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence                    1 123566788999999999999 8998874

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=97.71  E-value=0.00019  Score=70.54  Aligned_cols=87  Identities=20%  Similarity=0.114  Sum_probs=57.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++++|+|+|||+||+||+...  |.++-.++.        ...++-|.+        +  .                   
T Consensus       101 ~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--------~vkFvkI~a--------d--~-------------------  143 (192)
T cd02988         101 KDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--------DTKFVKIIS--------T--Q-------------------  143 (192)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--------CCEEEEEEh--------H--H-------------------
Confidence            356999999999999999876  777777662        244444432        1  0                   


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhh
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWK  482 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~  482 (570)
                               ....|+++++||++++ .+|+++.+-. . ....|+.  -|+....+.++.
T Consensus       144 ---------~~~~~~i~~lPTlliy-k~G~~v~~iv-G-~~~~gg~--~~~~~~lE~~L~  189 (192)
T cd02988         144 ---------CIPNYPDKNLPTILVY-RNGDIVKQFI-G-LLEFGGM--NTTMEDLEWLLV  189 (192)
T ss_pred             ---------hHhhCCCCCCCEEEEE-ECCEEEEEEe-C-chhhCCC--CCCHHHHHHHHH
Confidence                     0235888999998888 5788775421 1 2234555  567777666654

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=97.61  E-value=0.00013  Score=78.65  Aligned_cols=68  Identities=10%  Similarity=0.099  Sum_probs=47.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++|+++|+|||+||++|+.+.  +.++.+.++.    .+.++.++-|..        ++.                    
T Consensus        17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~----~~~~v~~~~vd~--------~~~--------------------   64 (462)
T TIGR01130        17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKK----KGPPIKLAKVDA--------TEE--------------------   64 (462)
T ss_pred             cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhh----cCCceEEEEEEC--------CCc--------------------
Confidence            578999999999999999988  8888888753    122344444432        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGR  452 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGk  452 (570)
                             ..+.+.|++.+.|+++++. +|+
T Consensus        65 -------~~l~~~~~i~~~Pt~~~~~-~g~   86 (462)
T TIGR01130        65 -------KDLAQKYGVSGYPTLKIFR-NGE   86 (462)
T ss_pred             -------HHHHHhCCCccccEEEEEe-CCc
Confidence                   1356678999999888885 444

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PLN02309 5'-adenylylsulfate reductase

Probab=97.60  E-value=0.00018  Score=79.42  Aligned_cols=68  Identities=15%  Similarity=0.157  Sum_probs=48.4

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|+|+||++|+...  +.++.++++      +.++.|.-|..        |.+..                  
T Consensus       364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~------~~~V~f~kVD~--------d~~~~------------------  411 (457)
T PLN02309        364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLA------GSGVKVAKFRA--------DGDQK------------------  411 (457)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhc------cCCeEEEEEEC--------CCcch------------------
Confidence            689999999999999999887  888888774      23566666553        11100                  


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCC
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQG  451 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqG  451 (570)
                             ....+.|+|+++||++++.+.+
T Consensus       412 -------~la~~~~~I~~~PTil~f~~g~  433 (457)
T PLN02309        412 -------EFAKQELQLGSFPTILLFPKNS  433 (457)
T ss_pred             -------HHHHhhCCCceeeEEEEEeCCC
Confidence                   1123458999999999996543

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.00038  Score=74.76  Aligned_cols=172  Identities=11%  Similarity=0.037  Sum_probs=101.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .++++++.|+|+||++|....  ..++-+.++       ....+.-|   |       .+                    
T Consensus        46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~-------~~~~~~~v---d-------~~--------------------   88 (383)
T KOG0191|consen   46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALK-------GKVKIGAV---D-------CD--------------------   88 (383)
T ss_pred             cCCceEEEEECCCCcchhhhchHHHHHHHHhc-------CceEEEEe---C-------ch--------------------
Confidence            457999999999999999987  666666663       12222222   2       11                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhhc-Cc-cccccccCCCcccc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEE-TW-RLELLVDGIDPLVL  500 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e~-~w-~~~ll~d~~d~~i~  500 (570)
                           ....+.+.|+|++.|++.++.+..+++...+..-..    ..+.|-....+.....- .= ..+|..+.++..+.
T Consensus        89 -----~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~  159 (383)
T KOG0191|consen   89 -----EHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAE----SLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVK  159 (383)
T ss_pred             -----hhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHH----HHHHHHHHhhccccccccCCceEEccccchhhhhh
Confidence                 123477889999999999999886666544411110    01111111011000000 00 11222222222221


Q ss_pred             ccccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC--CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          501 DWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA--RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       501 ~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~--~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                       ...+..+|.+|  +. |..||.+.+...++.+..  +..+++.-+..+ ........+++-..|++.+
T Consensus       160 -~~~~~~lv~f~--aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~-~~~~~~~~~~v~~~Pt~~~  224 (383)
T KOG0191|consen  160 -DSDADWLVEFY--APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT-VHKSLASRLEVRGYPTLKL  224 (383)
T ss_pred             -ccCcceEEEEe--ccccHHhhhcChHHHHHHHHhccCcceEEEeeccc-hHHHHhhhhcccCCceEEE
Confidence             23455666664  66 999999999999998753  578888888777 5667777777777777643

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=97.45  E-value=0.00048  Score=57.45  Aligned_cols=23  Identities=9%  Similarity=0.121  Sum_probs=19.0

Q ss_pred             EEEecCCCHHhHHHH--HHHHHHHH
Q 008311          351 LLISDLDISQEELSI--LEQIYNES  373 (570)
Q Consensus       351 L~FwAsWCpPCr~e~--L~~iY~el  373 (570)
                      +.|+|+|||+|+...  +.++-+++
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~   27 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEEL   27 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHc
Confidence            678999999999887  77776665

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=97.42  E-value=0.00065  Score=69.30  Aligned_cols=120  Identities=13%  Similarity=0.109  Sum_probs=78.8

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCHH-hHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQ-EELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpP-Cr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ...+.+.+|+.+.-.+|+||.+++||.-+-||. |=.|+  |.+.-+++.+.   .+-...=|||++ |+.  . | ..+
T Consensus       121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~---~~~~~~PlFIsv-DPe--R-D-~~~  192 (280)
T KOG2792|consen  121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAK---PGLPPVPLFISV-DPE--R-D-SVE  192 (280)
T ss_pred             ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhcc---CCCCccceEEEe-Ccc--c-C-CHH
Confidence            566888999999999999999999999999986 66666  99999998652   233333589986 431  1 1 233


Q ss_pred             HHHHHHcCCCc--eeeccccccChHHHHHHHHhCCCCCC--c-------------eEEEECCCCcEEccccc
Q 008311          405 KFETLQSSMPW--YTVYHPTLIDRAVIRYVKDVWHFKNK--P-------------ILVVLDPQGRVVSPNAL  459 (570)
Q Consensus       405 ~F~~~~~~MPW--~aV~fP~l~D~~~~~~L~~~y~V~~I--P-------------tlVVLDpqGkVv~~na~  459 (570)
                      ...+|.++..-  +++.=    -.+-++.+++.|+|---  |             ..+++||+|+.+.--|+
T Consensus       193 ~~~eY~~eF~pkllGLTG----T~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~Gr  260 (280)
T KOG2792|consen  193 VVAEYVSEFHPKLLGLTG----TTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGR  260 (280)
T ss_pred             HHHHHHHhcChhhhcccC----CHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcc
Confidence            34444443210  11111    11346678888876322  2             35799999998765433

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.39  E-value=0.00073  Score=58.02  Aligned_cols=66  Identities=18%  Similarity=0.319  Sum_probs=50.2

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      |++++++|++.||+||+...  +.++-++++       +++.+++|..        |+    +                 
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~-------~~v~f~~vd~--------~~----~-----------------   55 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK-------GKLLFVVVDA--------DD----F-----------------   55 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC-------CeEEEEEEch--------Hh----h-----------------
Confidence            89999999999999999887  888888885       2578888763        21    1                 


Q ss_pred             cChHHHHHHHHhCCCC--CCceEEEECC-CCcE
Q 008311          424 IDRAVIRYVKDVWHFK--NKPILVVLDP-QGRV  453 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~--~IPtlVVLDp-qGkV  453 (570)
                            ..+.+.|+++  ++|++++++. +|+.
T Consensus        56 ------~~~~~~~~i~~~~~P~~~~~~~~~~~k   82 (103)
T cd02982          56 ------GRHLEYFGLKEEDLPVIAIINLSDGKK   82 (103)
T ss_pred             ------HHHHHHcCCChhhCCEEEEEecccccc
Confidence                  1145567888  8999999986 3543

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=97.37  E-value=0.00024  Score=64.74  Aligned_cols=63  Identities=11%  Similarity=0.184  Sum_probs=48.2

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCch----------hhhhhc----ccccccccccc
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKR----------DKCGES----WQPLQLKSLVT  566 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~----------e~~~~~----~~~~~~~~~~~  566 (570)
                      .+..|+.+.+|||+. |||||.|.|.|.++.++  .+..++||..|...          ..+++.    .++..+|||+.
T Consensus        19 ~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~   96 (122)
T TIGR01295        19 ALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVH   96 (122)
T ss_pred             HHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEE
Confidence            356789999999999 99999999999999876  45779999998643          123333    34666888864

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=97.35  E-value=0.001  Score=55.88  Aligned_cols=22  Identities=14%  Similarity=-0.192  Sum_probs=20.1

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH
Q 008311          344 LRRKNVLLLISDLDISQEELSI  365 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~  365 (570)
                      -+||+|+|+|+|.||++|+..-
T Consensus        15 ~~~kpvlv~f~a~wC~~C~~l~   36 (82)
T PF13899_consen   15 KEGKPVLVDFGADWCPPCKKLE   36 (82)
T ss_dssp             HHTSEEEEEEETTTTHHHHHHH
T ss_pred             HcCCCEEEEEECCCCHhHHHHH
Confidence            3689999999999999999876

...

>smart00594 UAS UAS domain

Probab=97.32  E-value=0.00096  Score=60.49  Aligned_cols=68  Identities=16%  Similarity=0.335  Sum_probs=46.0

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH-----HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311          344 LRRKNVLLLISDLDISQEELSI-----LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV  418 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~-----L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV  418 (570)
                      =.||.++|||.+.||++|+.+-     =.++.+-++       ++|  |.+.. |    +.+                  
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~-------~~f--v~~~~-d----v~~------------------   72 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR-------ENF--IFWQV-D----VDT------------------   72 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH-------cCE--EEEEe-c----CCC------------------
Confidence            4689999999999999999876     223444442       133  33332 1    011                  


Q ss_pred             ccccccChHHHHHHHHhCCCCCCceEEEECCCC
Q 008311          419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQG  451 (570)
Q Consensus       419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqG  451 (570)
                             .++ ..+.+.|++.+.|+++++||+|
T Consensus        73 -------~eg-~~l~~~~~~~~~P~~~~l~~~~   97 (122)
T smart00594       73 -------SEG-QRVSQFYKLDSFPYVAIVDPRT   97 (122)
T ss_pred             -------hhH-HHHHHhcCcCCCCEEEEEecCC
Confidence                   111 3477789999999999999997

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.25  E-value=0.00071  Score=56.07  Aligned_cols=47  Identities=21%  Similarity=0.172  Sum_probs=37.8

Q ss_pred             eeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          338 RVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       338 ~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      ......+++++++++||+.|||+|+..+  |.++.+++.       ..+.++.+.+
T Consensus        24 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~i~~   72 (127)
T COG0526          24 PLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYG-------GDVEVVAVNV   72 (127)
T ss_pred             ceehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhc-------CCcEEEEEEC
Confidence            3444555699999999999999999998  889988874       1577888875

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=97.19  E-value=0.00093  Score=60.31  Aligned_cols=58  Identities=17%  Similarity=0.217  Sum_probs=47.7

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHHHHHHhh---CCCCEEEEEEecCCchhhhhhccccc
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANT---ARIPLEMVYVGKSTKRDKCGESWQPL  559 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~---~~~~fEiv~Vs~d~~~e~~~~~~~~~  559 (570)
                      ....||++.|||.+. |++|++..+.+.++|++   .+..+++++|+-|.+++.+++.++..
T Consensus        14 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~   75 (131)
T cd03009          14 SSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKM   75 (131)
T ss_pred             HHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcC
Confidence            356899999999888 99999999999999865   33589999999999887766655443

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.14  E-value=0.0025  Score=46.89  Aligned_cols=61  Identities=18%  Similarity=0.159  Sum_probs=41.9

Q ss_pred             EEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccccChH
Q 008311          350 LLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRA  427 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D~~  427 (570)
                      +++||+.||++|+...  +.++ +..       ..+++++.+++.+      ......+                     
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~-------~~~~~~~~~~~~~------~~~~~~~---------------------   45 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALL-------NKGVKFEAVDVDE------DPALEKE---------------------   45 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-Hhh-------CCCcEEEEEEcCC------ChHHhhH---------------------
Confidence            4789999999999998  6666 222       3579999998621      1111111                     


Q ss_pred             HHHHHHHhCCCCCCceEEEECCC
Q 008311          428 VIRYVKDVWHFKNKPILVVLDPQ  450 (570)
Q Consensus       428 ~~~~L~~~y~V~~IPtlVVLDpq  450 (570)
                           ...+++.+.|++++++++
T Consensus        46 -----~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659          46 -----LKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             -----HHhCCCccccEEEEEeCC
Confidence                 234677889999999876

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.0023  Score=62.11  Aligned_cols=111  Identities=20%  Similarity=0.199  Sum_probs=73.8

Q ss_pred             cccCCCCCeeeccccCCCEEEEEEecCCC-HHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          330 LVDGSTKRRVNIEVLRRKNVLLLISDLDI-SQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       330 l~~g~~G~~Vsls~LkGKvVlL~FwAsWC-pPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      +++| .-+.+++++++||+|+|+|+...- --|-.++  +...+++++.      -+-||+++|. |     +.-..-+|
T Consensus        18 VVdG-~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~------~n~eVig~S~-D-----S~fshlAW   84 (196)
T KOG0852|consen   18 VVDG-EFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRK------LNTEVLGIST-D-----SVFSHLAW   84 (196)
T ss_pred             EEcC-cceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHh------cCCeEEEEec-c-----chhhhhhH
Confidence            3455 446899999999999999987652 1244555  8888888873      4789999995 3     22233444


Q ss_pred             HHH-HcCCCceeeccccccChHHHHHHHHhCCC----CCCc--eEEEECCCCcEEc
Q 008311          407 ETL-QSSMPWYTVYHPTLIDRAVIRYVKDVWHF----KNKP--ILVVLDPQGRVVS  455 (570)
Q Consensus       407 ~~~-~~~MPW~aV~fP~l~D~~~~~~L~~~y~V----~~IP--tlVVLDpqGkVv~  455 (570)
                      .+. +++-..-.+..|.+.|.  .+.|.+.||+    .|++  -+++||++|.+..
T Consensus        85 ~ntprk~gGlg~~~iPllsD~--~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~  138 (196)
T KOG0852|consen   85 INTPRKQGGLGPLNIPLLSDL--NHEISRDYGVLKEDEGIALRGLFIIDPDGILRQ  138 (196)
T ss_pred             hcCchhhCCcCccccceeecc--chhhHHhcCceecCCCcceeeeEEEccccceEE
Confidence            321 11111122335555564  5789999998    5666  5999999998854

>PHA02125 thioredoxin-like protein

Probab=97.05  E-value=0.002  Score=53.40  Aligned_cols=16  Identities=6%  Similarity=-0.028  Sum_probs=14.1

Q ss_pred             EEEEecCCCHHhHHHH
Q 008311          350 LLLISDLDISQEELSI  365 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~  365 (570)
                      +++|||+||+||+...
T Consensus         2 iv~f~a~wC~~Ck~~~   17 (75)
T PHA02125          2 IYLFGAEWCANCKMVK   17 (75)
T ss_pred             EEEEECCCCHhHHHHH
Confidence            6799999999999754

>PF13728 TraF: F plasmid transfer operon protein

Probab=96.96  E-value=0.0029  Score=63.38  Aligned_cols=91  Identities=18%  Similarity=0.218  Sum_probs=65.9

Q ss_pred             eeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCce
Q 008311          339 VNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWY  416 (570)
Q Consensus       339 Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~  416 (570)
                      --+..+.+++=+++|..+.|+.|..+.  |..+-+++         +++|+.||+ |.                ..+|  
T Consensus       113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---------g~~v~~vs~-DG----------------~~~~--  164 (215)
T PF13728_consen  113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---------GFSVIPVSL-DG----------------RPIP--  164 (215)
T ss_pred             HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---------CCEEEEEec-CC----------------CCCc--
Confidence            345677889999999999999999998  88887776         599999997 31                1112  


Q ss_pred             eeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhH
Q 008311          417 TVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMM  462 (570)
Q Consensus       417 aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I  462 (570)
                        .||....   ..-+.+++++...|++++++++++....-+.++|
T Consensus       165 --~fp~~~~---~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~  205 (215)
T PF13728_consen  165 --SFPNPRP---DPGQAKRLGVKVTPALFLVNPNTKKWYPVSQGFM  205 (215)
T ss_pred             --CCCCCCC---CHHHHHHcCCCcCCEEEEEECCCCeEEEEeeecC
Confidence              1221111   1236778999999999999999866665554444

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=96.93  E-value=0.003  Score=50.48  Aligned_cols=34  Identities=6%  Similarity=-0.038  Sum_probs=22.0

Q ss_pred             EEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          350 LLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      +..|+++|||+|+...  |.++-+.        ..++++..+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~--------~~~i~~~~id~   38 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAAL--------NPNISAEMIDA   38 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHh--------CCceEEEEEEc
Confidence            4679999999997765  4444221        23466666653

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=96.91  E-value=0.0019  Score=59.74  Aligned_cols=74  Identities=16%  Similarity=0.245  Sum_probs=41.5

Q ss_pred             ccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311          343 VLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH  420 (570)
Q Consensus       343 ~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f  420 (570)
                      .+.++.-+|-|..+|||.|+.++  |.++-+..        .++++=+++.        |+..+..+.           |
T Consensus        38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~--------p~i~~~~i~r--------d~~~el~~~-----------~   90 (129)
T PF14595_consen   38 SIQKPYNILVITETWCGDCARNVPVLAKIAEAN--------PNIEVRIILR--------DENKELMDQ-----------Y   90 (129)
T ss_dssp             T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH---------TTEEEEEE-H--------HHHHHHTTT-----------T
T ss_pred             hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC--------CCCeEEEEEe--------cCChhHHHH-----------H
Confidence            45667788899999999999999  88887754        1467766652        333221111           1


Q ss_pred             ccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                                 +.  .|.+.||+++++|.+|+++.+
T Consensus        91 -----------lt--~g~~~IP~~I~~d~~~~~lg~  113 (129)
T PF14595_consen   91 -----------LT--NGGRSIPTFIFLDKDGKELGR  113 (129)
T ss_dssp             -----------TT---SS--SSEEEEE-TT--EEEE
T ss_pred             -----------Hh--CCCeecCEEEEEcCCCCEeEE
Confidence                       11  577889999999999998764

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=96.89  E-value=0.002  Score=58.53  Aligned_cols=59  Identities=22%  Similarity=0.239  Sum_probs=45.5

Q ss_pred             cccccccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-C--CCEEEEEEecCCchhhhhhcc
Q 008311          498 LVLDWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-R--IPLEMVYVGKSTKRDKCGESW  556 (570)
Q Consensus       498 ~i~~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~--~~fEiv~Vs~d~~~e~~~~~~  556 (570)
                      .++-...+||.+.|||.+. |++|++..+.+.++|++. +  .++++++|+-|...+.+++++
T Consensus         9 ~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~   71 (132)
T cd02964           9 VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYF   71 (132)
T ss_pred             cccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence            3433456899999999887 999999999999998752 2  479999999987665443333

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=96.86  E-value=0.0031  Score=56.80  Aligned_cols=55  Identities=13%  Similarity=0.187  Sum_probs=47.9

Q ss_pred             cCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH-HHHHHHHHhhhhhccCCCeEEEEEecc
Q 008311          332 DGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI-LEQIYNESRLHLTRQESHYEVVWIPIV  392 (570)
Q Consensus       332 ~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~-L~~iY~elk~~~~k~~~~fEIV~IsIv  392 (570)
                      .+.+|+.++++.+|||++|+.=-|+-|+-=.... |+++|+++++      ++|+|++.|-.
T Consensus         7 ~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~qy~~L~~L~~ky~~------~gl~ILaFPcn   62 (108)
T PF00255_consen    7 KDIDGKPVSLSKYKGKVLLIVNVASKCGYTKQYKQLNELYEKYKD------KGLEILAFPCN   62 (108)
T ss_dssp             EBTTSSEEEGGGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGG------GTEEEEEEEBS
T ss_pred             eCCCCCEECHHHcCCCEEEEEecccccCCccccHHHHHHHHHHhc------CCeEEEeeehH
Confidence            4678899999999999999999999998777555 9999999974      47999999963

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=96.85  E-value=0.0038  Score=53.93  Aligned_cols=70  Identities=11%  Similarity=0.003  Sum_probs=47.8

Q ss_pred             ccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311          341 IEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV  418 (570)
Q Consensus       341 ls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV  418 (570)
                      ++++++.+-+..|.+.||++|+.--  +.++-+++        .++++..+.+        +    .             
T Consensus         7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~--------~~i~~~~vd~--------~----~-------------   53 (89)
T cd03026           7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLN--------PNIEHEMIDG--------A----L-------------   53 (89)
T ss_pred             HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC--------CCceEEEEEh--------H----h-------------
Confidence            3478999999999999999999654  44443322        2466665543        1    0             


Q ss_pred             ccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                       +         ..+.++|+|.++|++++   +|+++..
T Consensus        54 -~---------~e~a~~~~V~~vPt~vi---dG~~~~~   78 (89)
T cd03026          54 -F---------QDEVEERGIMSVPAIFL---NGELFGF   78 (89)
T ss_pred             -C---------HHHHHHcCCccCCEEEE---CCEEEEe
Confidence             0         12556799999999975   6887764

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=96.82  E-value=0.0033  Score=51.61  Aligned_cols=61  Identities=16%  Similarity=0.245  Sum_probs=52.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          508 YIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       508 ~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      .|-+|.+..|++|+...+.+.+++++.+..++++.|..+...+..++ ++...+|+++++|+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~-~~v~~vPt~~~~g~   62 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAME-YGIMAVPAIVINGD   62 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHH-cCCccCCEEEECCE
Confidence            35678888899999999999999887777799999999888777765 78899999999885

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=96.81  E-value=0.0075  Score=58.11  Aligned_cols=118  Identities=17%  Similarity=0.190  Sum_probs=74.4

Q ss_pred             ccCCCCCeeeccccCCCEEEEEEecCCCHHhH-HHH-HHHHHHHHhhhhhccCCCeEEEEEecccCC--CCCChhhHHHH
Q 008311          331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEE-LSI-LEQIYNESRLHLTRQESHYEVVWIPIVDHF--IHWDDPTQKKF  406 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr-~e~-L~~iY~elk~~~~k~~~~fEIV~IsIvD~s--~~w~D~~~~~F  406 (570)
                      ..+.+|+.|+++.+|||+||+-=-||-|+-=. ... |..+|+++++      .+|+|+.-|-.--.  .+-++++...|
T Consensus        19 ~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~------~Gl~ILaFPCNQFg~QEp~~n~Ei~~f   92 (171)
T KOG1651|consen   19 AKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKD------QGLEILAFPCNQFGNQEPGSNEEILNF   92 (171)
T ss_pred             EecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhh------CCeEEEEeccccccCcCCCCcHHHHHH
Confidence            34678999999999999999999999998766 566 9999999973      58999999963110  11123344455


Q ss_pred             HH--HHcCCCcee---eccccccChHHHHHHHHhCC------CCCCceEEEECCCCcEEcc
Q 008311          407 ET--LQSSMPWYT---VYHPTLIDRAVIRYVKDVWH------FKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~--~~~~MPW~a---V~fP~l~D~~~~~~L~~~y~------V~~IPtlVVLDpqGkVv~~  456 (570)
                      -.  +....|-+.   |.=.  -..+.-+.|+..=+      |+.-=+-+++|++|+|+.+
T Consensus        93 ~~~r~~~~f~if~KidVNG~--~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~R  151 (171)
T KOG1651|consen   93 VKVRYGAEFPIFQKIDVNGD--NADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKR  151 (171)
T ss_pred             HHhccCCCCccEeEEecCCC--CCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEe
Confidence            43  222222111   1000  01123345553221      2222367899999999876

>PHA02278 thioredoxin-like protein

Probab=96.80  E-value=0.0025  Score=56.59  Aligned_cols=63  Identities=8%  Similarity=0.119  Sum_probs=52.1

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCch---hhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKR---DKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~---e~~~~~~~~~~~~~~~~  566 (570)
                      .+++.+.+||.|+ |+|||.+.|.+.+++++.+...+++.|.-|..+   +.+.+.+++.++||+++
T Consensus        12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~   78 (103)
T PHA02278         12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIG   78 (103)
T ss_pred             hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEE
Confidence            4789999999999 999999999999997663444667777777653   56888999999999975

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=96.78  E-value=0.0042  Score=61.56  Aligned_cols=67  Identities=7%  Similarity=0.016  Sum_probs=40.6

Q ss_pred             cCCCEEEEEEecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          344 LRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      +++.++++.|||+||++|+...  .+.+++..   . ..++.+..|..        +.                  +   
T Consensus       131 ~~~pv~I~~F~a~~C~~C~~~~--~~l~~l~~---~-~~~i~~~~vD~--------~~------------------~---  175 (215)
T TIGR02187       131 LDEPVRIEVFVTPTCPYCPYAV--LMAHKFAL---A-NDKILGEMIEA--------NE------------------N---  175 (215)
T ss_pred             cCCCcEEEEEECCCCCCcHHHH--HHHHHHHH---h-cCceEEEEEeC--------CC------------------C---
Confidence            4555677779999999999644  23333332   1 12455554432        11                  0   


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCc
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGR  452 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGk  452 (570)
                            ..+.++|+|.++|++++. .+|+
T Consensus       176 ------~~~~~~~~V~~vPtl~i~-~~~~  197 (215)
T TIGR02187       176 ------PDLAEKYGVMSVPKIVIN-KGVE  197 (215)
T ss_pred             ------HHHHHHhCCccCCEEEEe-cCCE
Confidence                  125567999999998875 4565

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=96.65  E-value=0.0041  Score=58.02  Aligned_cols=64  Identities=8%  Similarity=0.046  Sum_probs=53.5

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCch-hhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKR-DKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~-e~~~~~~~~~~~~~~~~  566 (570)
                      ...||.+.|||.+. |++|+.+.+.+.+++++.+..+.++.|.-|..+ ..+-+.+++-.+|++++
T Consensus        17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~   82 (142)
T cd02950          17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVF   82 (142)
T ss_pred             HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEE
Confidence            46899999999998 999999999999999876667888988877654 35556788999999876

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=96.50  E-value=0.0059  Score=62.86  Aligned_cols=92  Identities=18%  Similarity=0.193  Sum_probs=66.8

Q ss_pred             eeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCce
Q 008311          339 VNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWY  416 (570)
Q Consensus       339 Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~  416 (570)
                      -.+..+.+++=+++|..+.||.|..+.  |+.+-+++         +++|+.||+ |.       .         .+|  
T Consensus       143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---------gi~v~~VS~-DG-------~---------~~p--  194 (256)
T TIGR02739       143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---------GISVIPISV-DG-------T---------LIP--  194 (256)
T ss_pred             HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---------CCeEEEEec-CC-------C---------CCC--
Confidence            345677889999999999999999999  88888877         499999997 31       1         011  


Q ss_pred             eeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHh
Q 008311          417 TVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMW  463 (570)
Q Consensus       417 aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~  463 (570)
                      .+|-+. .|    .-+.+++|+...|++++++++++...+-|.++|.
T Consensus       195 ~fp~~~-~d----~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS  236 (256)
T TIGR02739       195 GLPNSR-SD----SGQAQHLGVKYFPALYLVNPKSQKMSPLAYGFIS  236 (256)
T ss_pred             CCCCcc-CC----hHHHHhcCCccCceEEEEECCCCcEEEEeeccCC
Confidence            111111 13    2367889999999999999997766665555553

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=96.42  E-value=0.0062  Score=52.81  Aligned_cols=64  Identities=8%  Similarity=0.035  Sum_probs=48.1

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecCCc---hhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKSTK---RDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d~~---~e~~~~~~~~~~~~~~~~  566 (570)
                      +.+||.+.|||++. |+||+.|.+.+   .++++..+..+.++.|.-+.+   ...+.+.+++-.+|++++
T Consensus         8 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~   78 (104)
T cd02953           8 LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF   78 (104)
T ss_pred             HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence            46899999999999 99999999876   355544333788888876543   346667778888888765

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=96.38  E-value=0.009  Score=52.27  Aligned_cols=61  Identities=8%  Similarity=0.022  Sum_probs=51.3

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCch--hhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKR--DKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~--e~~~~~~~~~~~~~~~~  566 (570)
                      .||.+.|+|.+. |++||.+.|.+.+++++. ..+.++.|..|...  ..+.+.+++-++||+++
T Consensus        14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~   77 (103)
T cd02985          14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLF   77 (103)
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEE
Confidence            489999999999 999999999999998876 56777888877654  36777789999999876

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.0072  Score=61.69  Aligned_cols=33  Identities=9%  Similarity=-0.062  Sum_probs=27.5

Q ss_pred             cccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHh
Q 008311          342 EVLRRKNVLLLISDLDISQEELSI--LEQIYNESR  374 (570)
Q Consensus       342 s~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk  374 (570)
                      +.-.||.|++.|.|+||+||..-.  +.++-++|.
T Consensus        17 s~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp   51 (288)
T KOG0908|consen   17 SAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP   51 (288)
T ss_pred             hccCceEEEEEEEecccchHHhhhhHHHHhhhhCc
Confidence            344579999999999999999877  778888774

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=96.33  E-value=0.0098  Score=51.85  Aligned_cols=62  Identities=3%  Similarity=-0.065  Sum_probs=50.2

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCC-CCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTAR-IPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~-~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +..|+.+.|||.+. |++||.+.+.+.+++++.+ ..+.++.|..|  ..+.-+.+++-..|++++
T Consensus        14 i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v~~~Pt~~~   77 (102)
T cd02948          14 LSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRGKCEPTFLF   77 (102)
T ss_pred             HccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCCCcCcEEEE
Confidence            34688999999999 9999999999999988754 45788888888  334567778888898765

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=96.31  E-value=0.0077  Score=61.74  Aligned_cols=91  Identities=15%  Similarity=0.167  Sum_probs=65.2

Q ss_pred             eccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCcee
Q 008311          340 NIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYT  417 (570)
Q Consensus       340 sls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~a  417 (570)
                      -+..+.+++=+++|..+.||.|..+.  |+.+-+++         +++|+.||+ |.       .         ..|  .
T Consensus       137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---------g~~v~~VS~-DG-------~---------~~p--~  188 (248)
T PRK13703        137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---------GLSVIPVSV-DG-------V---------INP--L  188 (248)
T ss_pred             HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---------CCeEEEEec-CC-------C---------CCC--C
Confidence            45677888999999999999999999  88888877         499999997 31       1         011  1


Q ss_pred             eccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHh
Q 008311          418 VYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMW  463 (570)
Q Consensus       418 V~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~  463 (570)
                      +|-+. .|.    -..+.+++...|++++++++++-..+=+.++|.
T Consensus       189 fp~~~-~d~----gqa~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS  229 (248)
T PRK13703        189 LPDSR-TDQ----GQAQRLGVKYFPALMLVDPKSGSVRPLSYGFIT  229 (248)
T ss_pred             CCCCc-cCh----hHHHhcCCcccceEEEEECCCCcEEEEeeccCC
Confidence            11111 132    244789999999999999987666555555443

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=96.16  E-value=0.017  Score=52.95  Aligned_cols=79  Identities=13%  Similarity=0.210  Sum_probs=43.2

Q ss_pred             CCCEEEEEEecC-------CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCc
Q 008311          345 RRKNVLLLISDL-------DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPW  415 (570)
Q Consensus       345 kGKvVlL~FwAs-------WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW  415 (570)
                      .|+.+.|+|.++       |||.|+.-.  +.+.+.+..       ++.-+|.|.+       .  ++..|+.-  .-  
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-------~~~~lv~v~V-------G--~r~~Wkdp--~n--   77 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-------ENARLVYVEV-------G--DRPEWKDP--NN--   77 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-------TTEEEEEEE------------HHHHC-T--TS--
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-------CCceEEEEEc-------C--CHHHhCCC--CC--
Confidence            466777777754       999999988  777776642       2456676664       1  22344320  00  


Q ss_pred             eeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          416 YTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       416 ~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                         +|          +--..|++++|||++-.+..++++..
T Consensus        78 ---~f----------R~~p~~~l~~IPTLi~~~~~~rL~e~  105 (119)
T PF06110_consen   78 ---PF----------RTDPDLKLKGIPTLIRWETGERLVEE  105 (119)
T ss_dssp             ---HH----------HH--CC---SSSEEEECTSS-EEEHH
T ss_pred             ---Cc----------eEcceeeeeecceEEEECCCCccchh
Confidence               11          01125899999999999877776543

; PDB: 1V9W_A 1WOU_A.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=96.16  E-value=0.016  Score=49.16  Aligned_cols=61  Identities=5%  Similarity=-0.050  Sum_probs=50.4

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .|+.+.+||.++ |++|+.+.+.+.++++..+..+-++.|.-|... .+.+.+++..+|++++
T Consensus        11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~l~~~~~i~~~Pt~~~   72 (96)
T cd02956          11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP-QIAQQFGVQALPTVYL   72 (96)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH-HHHHHcCCCCCCEEEE
Confidence            478999999999 999999999999999876556878888877755 4555688999999874

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=96.14  E-value=0.0079  Score=53.95  Aligned_cols=65  Identities=12%  Similarity=0.175  Sum_probs=49.5

Q ss_pred             cccCC-eEEEEEecCC-CchHHHHHHHHH---HHHhhCCCCEEEEEEecCCc------------hhhhhhcccccccccc
Q 008311          502 WIKEG-KYIFLYGGDD-VEWVRKFTTAAR---SVANTARIPLEMVYVGKSTK------------RDKCGESWQPLQLKSL  564 (570)
Q Consensus       502 ~~~eg-k~I~lYfgad-~~w~r~FT~~l~---~vy~~~~~~fEiv~Vs~d~~------------~e~~~~~~~~~~~~~~  564 (570)
                      ..++| |.+.|+|+++ |+||+.+.+.+.   ++.+..+..|.++.|.-|.+            ...+.+.+++-.+|++
T Consensus         9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~   88 (125)
T cd02951           9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV   88 (125)
T ss_pred             HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence            35788 9999999999 999999998764   44433334788888887764            3567777888889986


Q ss_pred             cc
Q 008311          565 VT  566 (570)
Q Consensus       565 ~~  566 (570)
                      ++
T Consensus        89 ~~   90 (125)
T cd02951          89 IF   90 (125)
T ss_pred             EE
Confidence            65

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=96.09  E-value=0.017  Score=52.52  Aligned_cols=61  Identities=10%  Similarity=0.056  Sum_probs=52.5

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .++.+-++|++. |+|||.+.|.+.+++.+-...+.++.|.-|... .+-+.+++.++||+++
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~-~la~~~~V~~iPTf~~   74 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP-DFNKMYELYDPPTVMF   74 (114)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH-HHHHHcCCCCCCEEEE
Confidence            577899999999 999999999999999886666889999999876 4667779999999875

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=96.07  E-value=0.012  Score=51.44  Aligned_cols=62  Identities=5%  Similarity=0.090  Sum_probs=50.0

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..||.+.++|.+. |++||.+.|.+.+++++.+ .+.++-|..++....+.+.+++.++||+.+
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~l   78 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILL   78 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEE
Confidence            5799999999999 9999999999999998754 356666655534556778889999998864

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=95.95  E-value=0.023  Score=47.98  Aligned_cols=60  Identities=8%  Similarity=0.090  Sum_probs=50.9

Q ss_pred             CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ++.+.+||.++ |+.|+.|.|.+.++++..+.++.++.|..+.. ....+.+++-..|++++
T Consensus        17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~v~~~Pt~~~   77 (103)
T PF00085_consen   17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-KELCKKYGVKSVPTIIF   77 (103)
T ss_dssp             SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-HHHHHHTTCSSSSEEEE
T ss_pred             CCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc-chhhhccCCCCCCEEEE
Confidence            78899999888 99999999999999987666999999999866 45567778888998764

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=95.90  E-value=0.016  Score=53.25  Aligned_cols=64  Identities=19%  Similarity=0.103  Sum_probs=46.8

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecCCchhhhhhc-------ccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKSTKRDKCGES-------WQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d~~~e~~~~~-------~~~~~~~~~~~  566 (570)
                      ..+||.|.|+|+++ |+|||.+-+..   .++.+....+|..|.|..++..+-.+++       ++.-+.|++++
T Consensus        12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vf   86 (124)
T cd02955          12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVF   86 (124)
T ss_pred             HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            46899999999999 99999986632   3454555668999999887754433323       45668998876

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=95.90  E-value=0.011  Score=53.44  Aligned_cols=62  Identities=11%  Similarity=0.123  Sum_probs=42.2

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh--CCCCEEEEEEecCCchhhhhhcccccc--cccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT--ARIPLEMVYVGKSTKRDKCGESWQPLQ--LKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~--~~~~fEiv~Vs~d~~~e~~~~~~~~~~--~~~~~~  566 (570)
                      ..+||.|.|+|+++ |+||+.+.+.+.+....  ...+|-++-|..  .++...+.++..+  +|++++
T Consensus        16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~--~~~~~~~~~~~~g~~vPt~~f   82 (117)
T cd02959          16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLED--DEEPKDEEFSPDGGYIPRILF   82 (117)
T ss_pred             HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecC--CCCchhhhcccCCCccceEEE
Confidence            45789999999999 99999999998886543  334555554444  3333333445544  888765

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=95.87  E-value=0.02  Score=47.52  Aligned_cols=63  Identities=6%  Similarity=0.028  Sum_probs=50.9

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC--CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA--RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~--~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +.+++.+.++|.++ |++|+.|.+.+.++++..  +..+.++.|..++ ...+.+.+++-..|++++
T Consensus        12 i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i~~~Pt~~~   77 (101)
T cd02961          12 VKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGVRGYPTIKL   77 (101)
T ss_pred             HhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCCCCCCEEEE
Confidence            45666888888777 999999999999998765  6889999998776 456677788888898754

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=95.78  E-value=0.055  Score=42.69  Aligned_cols=16  Identities=0%  Similarity=-0.226  Sum_probs=13.4

Q ss_pred             EEEEecCCCHHhHHHH
Q 008311          350 LLLISDLDISQEELSI  365 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~  365 (570)
                      +..|+++|||+|+.-.
T Consensus         2 i~lf~~~~C~~C~~~~   17 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAK   17 (74)
T ss_pred             EEEEcCCCChhHHHHH
Confidence            3579999999999864

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=95.76  E-value=0.025  Score=54.74  Aligned_cols=103  Identities=17%  Similarity=0.226  Sum_probs=69.7

Q ss_pred             CcccCCCCCeeeccccCCC-EEEEEEecCC-CHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          329 PLVDGSTKRRVNIEVLRRK-NVLLLISDLD-ISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGK-vVlL~FwAsW-CpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ..+.+.+|+.+++....|+ +|++||.--. -|.|-...  +..-|+++|.      .+.||+++|- |     +-..++
T Consensus        72 ~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kk------a~aeV~GlS~-D-----~s~sqK  139 (211)
T KOG0855|consen   72 FTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKK------AGAEVIGLSG-D-----DSASQK  139 (211)
T ss_pred             cccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhh------cCceEEeecc-C-----chHHHH
Confidence            4466889999999999985 7778777554 57788887  9999999972      5799999996 2     234567


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHHHhCCCCC-----Cc--eEEEECCCC
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKN-----KP--ILVVLDPQG  451 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~-----IP--tlVVLDpqG  451 (570)
                      .|.. ..++|+.     -+.|+  .+.+...||+.+     +|  ..+++|..|
T Consensus       140 aF~s-KqnlPYh-----LLSDp--k~e~ik~lGa~k~p~gg~~~Rsh~if~kg~  185 (211)
T KOG0855|consen  140 AFAS-KQNLPYH-----LLSDP--KNEVIKDLGAPKDPFGGLPGRSHYIFDKGG  185 (211)
T ss_pred             Hhhh-hccCCee-----eecCc--chhHHHHhCCCCCCCCCcccceEEEEecCC
Confidence            7765 3445532     23344  345666677654     23  345555543

>TIGR02180 GRX_euk Glutaredoxin

Probab=95.71  E-value=0.028  Score=46.24  Aligned_cols=32  Identities=19%  Similarity=0.168  Sum_probs=23.1

Q ss_pred             EEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          351 LLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       351 L~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      +.|+++|||+|+...  |.+++  .       ...|+++.|+.
T Consensus         2 ~~f~~~~Cp~C~~~~~~L~~~~--i-------~~~~~~~~v~~   35 (84)
T TIGR02180         2 VVFSKSYCPYCKKAKEILAKLN--V-------KPAYEVVELDQ   35 (84)
T ss_pred             EEEECCCChhHHHHHHHHHHcC--C-------CCCCEEEEeeC
Confidence            569999999999987  55544  2       12488887763

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=95.71  E-value=0.026  Score=49.71  Aligned_cols=63  Identities=6%  Similarity=0.085  Sum_probs=49.6

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCc-hhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~  566 (570)
                      ..||.+.+.|.+. |++|+++.+.+.+++++. +..+.+..|..|.. ..-.++.+++-..||+.+
T Consensus        19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~   84 (109)
T cd02993          19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILF   84 (109)
T ss_pred             hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEE
Confidence            4678888888888 999999999999998764 44699999988863 433445678888998863

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=95.71  E-value=0.031  Score=48.03  Aligned_cols=62  Identities=8%  Similarity=0.063  Sum_probs=49.9

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .++|.+.+||.+. |++|+.+.+.+.+++++.+..+.++.+..|...+ +.+.+++...|++++
T Consensus        11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~-l~~~~~v~~vPt~~i   73 (97)
T cd02949          11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE-IAEAAGIMGTPTVQF   73 (97)
T ss_pred             hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH-HHHHCCCeeccEEEE
Confidence            4788999999877 9999999999999998866678888888776554 445667788888765

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=95.69  E-value=0.03  Score=44.65  Aligned_cols=59  Identities=14%  Similarity=0.223  Sum_probs=44.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|.+..|++|+...+.+.++... ...++...+.-++.++ ..+-++...+|+++++||
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~-~~~i~~~~id~~~~~~-l~~~~~i~~vPti~i~~~   61 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAAL-NPNISAEMIDAAEFPD-LADEYGVMSVPAIVINGK   61 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHh-CCceEEEEEEcccCHh-HHHHcCCcccCEEEECCE
Confidence            5577788899999999999988654 3346666665555544 455678889999999986

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=95.69  E-value=0.026  Score=48.16  Aligned_cols=61  Identities=3%  Similarity=-0.004  Sum_probs=48.3

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .++.+.+||.+. |++||+|.+.+.+++++....+.++.+..+... .+.+.+++-+.|++++
T Consensus        17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~i~~~P~~~~   78 (103)
T cd03001          17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ-SLAQQYGVRGFPTIKV   78 (103)
T ss_pred             CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH-HHHHHCCCCccCEEEE
Confidence            456678888888 999999999999998876667888888776554 4556778888998764

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=95.67  E-value=0.032  Score=48.04  Aligned_cols=63  Identities=14%  Similarity=0.042  Sum_probs=51.9

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +.+++.+.++|.+. |++|+++.|.+.+++++.+..+.+..|..|+..+ +.+-+++-..||+++
T Consensus        15 v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~   78 (101)
T cd03003          15 VNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM-LCRSQGVNSYPSLYV   78 (101)
T ss_pred             hcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH-HHHHcCCCccCEEEE
Confidence            45678899999888 9999999999999998877678889999987654 455678889999854

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=95.64  E-value=0.012  Score=46.24  Aligned_cols=57  Identities=19%  Similarity=0.265  Sum_probs=47.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecC-CchhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKS-TKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d-~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|+...|++|+.....|    ++.|.++|.+-|+++ ..++.+++..+....|.+.++|+
T Consensus         1 V~vy~~~~C~~C~~~~~~L----~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~   58 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFL----DEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGK   58 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHH----HHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTE
T ss_pred             cEEEEcCCCcCHHHHHHHH----HHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCE
Confidence            4578888899997766666    666999999999999 57778888789999999999985

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK10996 thioredoxin 2; Provisional

Probab=95.63  E-value=0.03  Score=51.96  Aligned_cols=63  Identities=11%  Similarity=0.125  Sum_probs=52.6

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +.+||.+.|||.++ |++|+.+.+.+.+++++.+..+.++.|..++.. ++.+.+++-..|++++
T Consensus        49 i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~-~l~~~~~V~~~Ptlii  112 (139)
T PRK10996         49 LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER-ELSARFRIRSIPTIMI  112 (139)
T ss_pred             HhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH-HHHHhcCCCccCEEEE
Confidence            45789999999999 999999999999999887777888778776554 5666778889999876

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=95.60  E-value=0.024  Score=51.89  Aligned_cols=62  Identities=16%  Similarity=0.111  Sum_probs=51.4

Q ss_pred             CCeEEEEEecC-------C-CchHHHHHHHHHHHHhhCCCCEEEEEEecCC------chhhhhhccccc-ccccccc
Q 008311          505 EGKYIFLYGGD-------D-VEWVRKFTTAARSVANTARIPLEMVYVGKST------KRDKCGESWQPL-QLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfga-------d-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~------~~e~~~~~~~~~-~~~~~~~  566 (570)
                      +|+.+.|+|.+       . |++||...|.+.+++.+...+..++.|.-|+      +...++..+++. .+||+++
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~   96 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR   96 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence            58899999988       7 9999999999999988765556677777665      356888999998 9999875

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=95.56  E-value=0.031  Score=45.29  Aligned_cols=61  Identities=10%  Similarity=0.059  Sum_probs=47.6

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+++.+.|||++. |++|+.+.+.+.++.+. ...+.++.+.-++.. ++.+.++.-..|++++
T Consensus         8 ~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~-~~~~~~~v~~~P~~~~   69 (93)
T cd02947           8 KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENP-ELAEEYGVRSIPTFLF   69 (93)
T ss_pred             hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCCh-hHHHhcCcccccEEEE
Confidence            3447777777777 99999999999999877 677888888777643 4566678888998776

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=95.53  E-value=0.024  Score=49.45  Aligned_cols=56  Identities=16%  Similarity=0.158  Sum_probs=43.7

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      +||.+.|||-+. |++|++..+.+.+++++....+.++.++ |++.++.++.++..++
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~   76 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHGL   76 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCC
Confidence            589888888665 9999999999999987655568888886 5666777776665554

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=95.53  E-value=0.028  Score=48.65  Aligned_cols=62  Identities=5%  Similarity=-0.065  Sum_probs=51.0

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~  566 (570)
                      .|+.+.++|.+. |++|+++.+.+.++++..+..+.++.|..|.+ ...+.+.+++-+.|++++
T Consensus        17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~   80 (109)
T cd03002          17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV   80 (109)
T ss_pred             CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence            577788999888 99999999999999987666788888888773 345666788888998875

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=95.52  E-value=0.035  Score=46.23  Aligned_cols=56  Identities=14%  Similarity=0.124  Sum_probs=44.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|+ ..|++|+..-+.+.++.++.+..++++-|.  +.++ ..+ ++...+|+++++|+
T Consensus         3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~~~~-a~~-~~v~~vPti~i~G~   58 (76)
T TIGR00412         3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT--DMNE-ILE-AGVTATPGVAVDGE   58 (76)
T ss_pred             EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--CHHH-HHH-cCCCcCCEEEECCE
Confidence            55665 679999999999999998888888887776  3333 333 69999999999985

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=95.51  E-value=0.029  Score=47.69  Aligned_cols=62  Identities=6%  Similarity=0.012  Sum_probs=50.7

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCC--CCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTAR--IPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~--~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .++.+.++|.+. |++||+|.+.+.++++..+  .++.++.+..+++...+.+.++.-..|++++
T Consensus        17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~   81 (105)
T cd02998          17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF   81 (105)
T ss_pred             CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence            456788888888 9999999999999997643  5788888887775567777788899999875

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PRK09381 trxA thioredoxin; Provisional

Probab=95.47  E-value=0.041  Score=47.98  Aligned_cols=61  Identities=7%  Similarity=0.012  Sum_probs=50.1

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .++.+.++|-+. |++|+.+.+.+.+++++.+..+.++.|..|+..+- .+.+++-..|++++
T Consensus        20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~-~~~~~v~~~Pt~~~   81 (109)
T PRK09381         20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT-APKYGIRGIPTLLL   81 (109)
T ss_pred             CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH-HHhCCCCcCCEEEE
Confidence            467788888666 99999999999999988666799999999877654 44578888998876

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=95.40  E-value=0.042  Score=47.39  Aligned_cols=61  Identities=5%  Similarity=-0.128  Sum_probs=49.8

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .++.+.++|.+. |++|+.+.|.+.+++++.+..+.+..|..+...+ +.+.+++-.+||+++
T Consensus        18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~i~~~Pt~~~   79 (104)
T cd03004          18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES-LCQQANIRAYPTIRL   79 (104)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH-HHHHcCCCcccEEEE
Confidence            467889999888 9999999999999998766678888888887544 556678888898764

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=95.34  E-value=0.047  Score=49.29  Aligned_cols=64  Identities=8%  Similarity=-0.043  Sum_probs=52.8

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..+++.+.+.|-+. |++||.+.|.+.+++++.+..+.++-|..|...+..++.+++-.+||+.+
T Consensus        26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~l   90 (113)
T cd03006          26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHL   90 (113)
T ss_pred             ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEE
Confidence            46789999999999 99999999999999987666688888888777666656677888888754

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=95.26  E-value=0.036  Score=47.18  Aligned_cols=61  Identities=13%  Similarity=0.136  Sum_probs=47.0

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCC---CCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTAR---IPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~---~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+++ +.++|.+. |++|+.+.|.+.+++++.+   ..+.++.|..+... .+.+.+++-.+|++++
T Consensus        15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~   79 (102)
T cd03005          15 AEGN-HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-ELCSEFQVRGYPTLLL   79 (102)
T ss_pred             hcCC-EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-hhHhhcCCCcCCEEEE
Confidence            3444 78888888 9999999999999987643   37888888776654 5566678888998764

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=95.20  E-value=0.095  Score=56.52  Aligned_cols=60  Identities=5%  Similarity=0.027  Sum_probs=46.9

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCC---CEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARI---PLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~---~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..++.+.+||.+. |++|+.|.|.+.++++..+.   .+-++.+..+.+.  +.. ++.-+.|++++
T Consensus       362 ~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--~~~-~~i~~~Pt~~~  425 (462)
T TIGR01130       362 DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--VPP-FEVEGFPTIKF  425 (462)
T ss_pred             cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--cCC-CCccccCEEEE
Confidence            3589999999999 99999999999999876433   6888888776543  333 77778888765

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>TIGR01068 thioredoxin thioredoxin

Probab=95.15  E-value=0.047  Score=45.85  Aligned_cols=61  Identities=8%  Similarity=0.034  Sum_probs=49.8

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +++.+.|||.+. |++|+.|-+.+.+++++.+..+.++.|..++..+ +.+.+++...|++++
T Consensus        13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~P~~~~   74 (101)
T TIGR01068        13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD-IAAKYGIRSIPTLLL   74 (101)
T ss_pred             cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH-HHHHcCCCcCCEEEE
Confidence            356788888777 9999999999999987767779999998876554 566778889999876

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=95.14  E-value=0.029  Score=47.77  Aligned_cols=64  Identities=11%  Similarity=0.056  Sum_probs=47.7

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCC--CCEEEEEEecCCc-hhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTAR--IPLEMVYVGKSTK-RDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~--~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~  566 (570)
                      +.+++.+.++|.++ |++|+++.+.+.++++...  ..+.++.+.-+.+ ...+.+.++.-..|++++
T Consensus        14 ~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~   81 (104)
T cd02997          14 LKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY   81 (104)
T ss_pred             HhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence            45678899999888 9999999999999986533  4455555555542 446667778888898864

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=95.13  E-value=0.035  Score=53.08  Aligned_cols=53  Identities=17%  Similarity=0.070  Sum_probs=42.2

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPL  559 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~  559 (570)
                      ..||.+.|||.++ |++|+++.+.+.+++++   +++++.|+.+++.++.++.++..
T Consensus        61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~  114 (173)
T TIGR00385        61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKEL  114 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHc
Confidence            4789999999888 99999999999998764   58999999876666555554433

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=95.09  E-value=0.048  Score=48.74  Aligned_cols=58  Identities=9%  Similarity=-0.094  Sum_probs=46.1

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccc
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      ...+||.+.|||-+. |++|++..+.+.+++++.  ++.++.|+.+++.+.+++.++...+
T Consensus        21 ~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~   79 (127)
T cd03010          21 ADLKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGN   79 (127)
T ss_pred             HHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCC
Confidence            345799888888666 999999999999997664  3999999988887777776555444

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=95.06  E-value=0.048  Score=49.46  Aligned_cols=60  Identities=15%  Similarity=0.233  Sum_probs=49.0

Q ss_pred             CeEEEEEecC--CCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          506 GKYIFLYGGD--DVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       506 gk~I~lYfga--d~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      |+.|..|.+.  .||+|+.+.|.+.+++++-+..+.++.|.-|+.. ++-..+++..+|||++
T Consensus        28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-~la~~f~V~sIPTli~   89 (111)
T cd02965          28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-ALAARFGVLRTPALLF   89 (111)
T ss_pred             CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-HHHHHcCCCcCCEEEE
Confidence            4444444444  2999999999999999987777888899888876 7888889999999975

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=95.05  E-value=0.046  Score=51.26  Aligned_cols=52  Identities=13%  Similarity=-0.003  Sum_probs=42.6

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGES  555 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~  555 (570)
                      .+||.+.|||-+. |++|+...+.+.+++++. +.++.++.|+.|++++.+++.
T Consensus        59 ~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~  112 (173)
T PRK03147         59 LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNF  112 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHH
Confidence            5789998999777 999999999999999763 457999999998876654433

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=95.04  E-value=0.065  Score=48.88  Aligned_cols=61  Identities=10%  Similarity=0.002  Sum_probs=51.7

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ++|.|-|-||++ |+||+...|.+.+++++-....-++-|.-|.-.+ +.+.++..+||++++
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d-va~~y~I~amPtfvf   74 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV-YTQYFDISYIPSTIF   74 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH-HHHhcCceeCcEEEE
Confidence            689999999999 9999999999999998754337777787776555 888889999999874

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=95.04  E-value=0.051  Score=61.40  Aligned_cols=75  Identities=15%  Similarity=0.055  Sum_probs=50.1

Q ss_pred             CCCEEEEEEecCCCHHhHHHH---HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          345 RRKNVLLLISDLDISQEELSI---LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~---L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      ++|+|+|+|.|.||.-|+.+-   +.+.....+      -.+  +|.+=.     ||+..                    
T Consensus       473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~------~~~--~vlLqa-----DvT~~--------------------  519 (569)
T COG4232         473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA------LQD--VVLLQA-----DVTAN--------------------  519 (569)
T ss_pred             CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh------cCC--eEEEEe-----eecCC--------------------
Confidence            456999999999999999876   443333332      123  344432     23322                    


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                         | +.++.+-++|++-|.|+.++.+++|+-...
T Consensus       520 ---~-p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~  550 (569)
T COG4232         520 ---D-PAITALLKRLGVFGVPTYLFFGPQGSEPEI  550 (569)
T ss_pred             ---C-HHHHHHHHHcCCCCCCEEEEECCCCCcCcC
Confidence               2 234556677999999999999999976543

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=95.02  E-value=0.046  Score=47.50  Aligned_cols=63  Identities=5%  Similarity=0.024  Sum_probs=48.1

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC---CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA---RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~---~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +.+++.+.|+|.+. |++||.+.|.+.+++++.   +.++.+..+..+.. ..+.+.+++-..|++++
T Consensus        12 ~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~I~~~Pt~~l   78 (104)
T cd03000          12 VRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIASEFGVRGYPTIKL   78 (104)
T ss_pred             hccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHHhhcCCccccEEEE
Confidence            34567888999888 999999999999998763   45677777766553 35566788888888754

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=95.01  E-value=0.068  Score=47.84  Aligned_cols=63  Identities=5%  Similarity=0.116  Sum_probs=50.9

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTS  567 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~  567 (570)
                      +..++.+-+||+++ |++|+.+-+.+.++.... ..++++.|..|... ...+.+++..+|++++-
T Consensus        19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~-~l~~~~~v~~vPt~~i~   82 (113)
T cd02975          19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDK-EKAEKYGVERVPTTIFL   82 (113)
T ss_pred             hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCH-HHHHHcCCCcCCEEEEE
Confidence            34677788999887 999999999999998664 45788888887654 56677899999999883

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>TIGR02740 TraF-like TraF-like protein

Probab=94.92  E-value=0.045  Score=56.71  Aligned_cols=61  Identities=5%  Similarity=0.004  Sum_probs=49.5

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCch----------hhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKR----------DKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~----------e~~~~~~~~~~~~~~~~  566 (570)
                      +.|+++.+||.+. |++|+.+.|.+.+++++.|  +++++|+-|...          ....+.+++..+|++++
T Consensus       164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L  235 (271)
T TIGR02740       164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL  235 (271)
T ss_pred             hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence            5688999989888 9999999999999988765  889999988642          23456678888888764

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>TIGR02180 GRX_euk Glutaredoxin

Probab=94.87  E-value=0.047  Score=44.95  Aligned_cols=58  Identities=10%  Similarity=0.166  Sum_probs=43.1

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhh----hhhccccccccccccCCC
Q 008311          510 FLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDK----CGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       510 ~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~----~~~~~~~~~~~~~~~~~~  569 (570)
                      -+|+...||+|++..+.|.+.+  ....++++-|..++..+.    +.+..+...+|++.++|+
T Consensus         2 ~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~   63 (84)
T TIGR02180         2 VVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGK   63 (84)
T ss_pred             EEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCE
Confidence            4676666999999999888873  122399999998866554    444456678999999885

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=94.73  E-value=0.28  Score=55.56  Aligned_cols=125  Identities=14%  Similarity=0.168  Sum_probs=76.5

Q ss_pred             HHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhc-CCCCCCCchhHHHHhhhcCccccccccCCCccccccc--cCC
Q 008311          430 RYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWG-SNAFPFTSLREEALWKEETWRLELLVDGIDPLVLDWI--KEG  506 (570)
Q Consensus       430 ~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G-~~aFPFt~~~~e~L~~e~~w~~~ll~d~~d~~i~~~~--~eg  506 (570)
                      ..+.+.|++..+|+.+++|.+|+-..      |.=+| +.++-|++- .+.|..-.+     -..+++..+.+.+  +++
T Consensus       409 ~~~~~~~~v~~~P~~~i~~~~~~~~~------i~f~g~P~G~Ef~s~-i~~i~~~~~-----~~~~l~~~~~~~i~~~~~  476 (555)
T TIGR03143       409 PESETLPKITKLPTVALLDDDGNYTG------LKFHGVPSGHELNSF-ILALYNAAG-----PGQPLGEELLEKIKKITK  476 (555)
T ss_pred             hhhHhhcCCCcCCEEEEEeCCCcccc------eEEEecCccHhHHHH-HHHHHHhcC-----CCCCCCHHHHHHHHhcCC
Confidence            45677899999999999987764211      22234 344555542 233332111     0012233322222  345


Q ss_pred             e-EEEEEecCCCchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          507 K-YIFLYGGDDVEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       507 k-~I~lYfgad~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      + .|=+|-|-.|+.|.+-...+.+++.+. ++..||+-+..-  . +..+-++++..|+++++|+
T Consensus       477 ~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~--~-~~~~~~~v~~vP~~~i~~~  538 (555)
T TIGR03143       477 PVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF--P-DLKDEYGIMSVPAIVVDDQ  538 (555)
T ss_pred             CeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc--H-HHHHhCCceecCEEEECCE
Confidence            5 477888999999987777777777664 677777766543  3 3444559999999999985

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=94.72  E-value=0.076  Score=45.11  Aligned_cols=60  Identities=3%  Similarity=-0.010  Sum_probs=46.8

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhC-C-CCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTA-R-IPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~-~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +++.+.|+|.+. |++|+.|.+.+.++++.. + .++.+..+..+..+  ....++.-+.|++++
T Consensus        17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~~Pt~~~   79 (104)
T cd02995          17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND--VPSEFVVDGFPTILF   79 (104)
T ss_pred             CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh--hhhhccCCCCCEEEE
Confidence            468888888877 999999999999998763 3 47888888887653  445556678888764

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=94.68  E-value=0.031  Score=48.65  Aligned_cols=64  Identities=14%  Similarity=0.173  Sum_probs=46.1

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHH---HhhCCCCEEEEEEecCCch-------------------hhhhhcccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSV---ANTARIPLEMVYVGKSTKR-------------------DKCGESWQPLQ  560 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~v---y~~~~~~fEiv~Vs~d~~~-------------------e~~~~~~~~~~  560 (570)
                      .+||++.+||++. |++|+.+.+.+.+.   .+..+..+.++++.-+.++                   .++.+.+++-+
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g   82 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG   82 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence            4789999999877 99999999999864   3334557999999998765                   34667778888


Q ss_pred             ccccccC
Q 008311          561 LKSLVTS  567 (570)
Q Consensus       561 ~~~~~~~  567 (570)
                      -||+++-
T Consensus        83 tPt~~~~   89 (112)
T PF13098_consen   83 TPTIVFL   89 (112)
T ss_dssp             SSEEEEC
T ss_pred             cCEEEEE
Confidence            8887753

...

>PTZ00051 thioredoxin; Provisional

Probab=94.66  E-value=0.059  Score=45.74  Aligned_cols=61  Identities=5%  Similarity=0.015  Sum_probs=44.6

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+++.+.|||++. |++||.|.+.+.+++++.. ++-++.|..+. ...+.+.+++..+|++++
T Consensus        16 ~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~   77 (98)
T PTZ00051         16 SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDE-LSEVAEKENITSMPTFKV   77 (98)
T ss_pred             hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcc-hHHHHHHCCCceeeEEEE
Confidence            4678888999888 9999999999999987632 23333333332 346777789999999875

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=94.57  E-value=0.2  Score=48.51  Aligned_cols=79  Identities=13%  Similarity=0.136  Sum_probs=37.3

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH-----HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311          344 LRRKNVLLLISDLDISQEELSI-----LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV  418 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~-----L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV  418 (570)
                      -.+|+|+|.+..+||..|....     =.++-+-+.+       +|  |-|=+ |+     |+. ...+..         
T Consensus        35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-------~F--I~Vkv-Dr-----ee~-Pdid~~---------   89 (163)
T PF03190_consen   35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-------NF--IPVKV-DR-----EER-PDIDKI---------   89 (163)
T ss_dssp             HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-------H---EEEEE-ET-----TT--HHHHHH---------
T ss_pred             hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-------CE--EEEEe-cc-----ccC-ccHHHH---------
Confidence            3589999999999999998654     1122222321       23  43332 32     111 111111         


Q ss_pred             ccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                               .........|..|-|++|+++|+|+.+..
T Consensus        90 ---------y~~~~~~~~~~gGwPl~vfltPdg~p~~~  118 (163)
T PF03190_consen   90 ---------YMNAVQAMSGSGGWPLTVFLTPDGKPFFG  118 (163)
T ss_dssp             ---------HHHHHHHHHS---SSEEEEE-TTS-EEEE
T ss_pred             ---------HHHHHHHhcCCCCCCceEEECCCCCeeee
Confidence                     11122233477899999999999999863

; PDB: 3IRA_A.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=94.54  E-value=0.1  Score=44.10  Aligned_cols=60  Identities=12%  Similarity=0.081  Sum_probs=46.3

Q ss_pred             CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ++.+.++|.+. |++||.+.+.+.+++++...++-++-|..+... .+.+.++.-.+|++++
T Consensus        14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~-~~~~~~~i~~~Pt~~~   74 (97)
T cd02984          14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP-EISEKFEITAVPTFVF   74 (97)
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH-HHHHhcCCccccEEEE
Confidence            68888888888 999999999999998775556777777655433 4556678888888764

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=94.52  E-value=0.06  Score=52.12  Aligned_cols=54  Identities=15%  Similarity=0.079  Sum_probs=43.0

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQ  560 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~  560 (570)
                      ..||.+.|+|-+. |++|++..|.+.++++.   .++++.|+-|++.+.+++.++..+
T Consensus        66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~  120 (185)
T PRK15412         66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELG  120 (185)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcC
Confidence            3799999999777 99999999999998653   689999998777676665554443

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.51  E-value=0.1  Score=50.20  Aligned_cols=87  Identities=14%  Similarity=0.242  Sum_probs=60.5

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH-----HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311          344 LRRKNVLLLISDLDISQEELSI-----LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV  418 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~-----L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV  418 (570)
                      -+||+.+|.|....|+.|.++=     -.++.+-++       +.|-++.+.+.+       ...-.|..--..      
T Consensus        40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk-------~hf~~~~l~i~~-------skpv~f~~g~ke------   99 (182)
T COG2143          40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK-------EHFSAYYLNISY-------SKPVLFKVGDKE------   99 (182)
T ss_pred             ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh-------hCeEEEEEEecc-------CcceEeecCcee------
Confidence            4789999999999999999876     455665564       358889888732       111111110000      


Q ss_pred             ccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                            .....+.|++.|+|++.|+.|+.|.+|+-+-.
T Consensus       100 ------e~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~  131 (182)
T COG2143         100 ------EKMSTEELAQKFAVRSTPTFVFFDKTGKTILE  131 (182)
T ss_pred             ------eeecHHHHHHHhccccCceEEEEcCCCCEEEe
Confidence                  01123579999999999999999999988753

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=94.35  E-value=0.086  Score=46.75  Aligned_cols=60  Identities=10%  Similarity=0.053  Sum_probs=49.6

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESWQPLQLKSLV  565 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~  565 (570)
                      .|+.+.++|-+. |++|+.+.|.+.+++++. +.++.+..|..|... .+.+.+++-+.|+++
T Consensus        23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~-~l~~~~~V~~~Pt~~   84 (111)
T cd02963          23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER-RLARKLGAHSVPAIV   84 (111)
T ss_pred             CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH-HHHHHcCCccCCEEE
Confidence            689999999888 999999999999999874 346888888877654 455668899999887

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=94.27  E-value=0.072  Score=44.97  Aligned_cols=62  Identities=5%  Similarity=0.067  Sum_probs=47.2

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCC--CEEEEEEecCCchhhhhhccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARI--PLEMVYVGKSTKRDKCGESWQPLQLKSLV  565 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~--~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~  565 (570)
                      +.+++.+.|+|.+. |+.||+|.+.+.++++..+.  ++-++.+..+... .+.+.++.-.+|++.
T Consensus        10 ~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~P~~~   74 (102)
T TIGR01126        10 VLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK-DLASRFGVSGFPTIK   74 (102)
T ss_pred             hccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH-HHHHhCCCCcCCEEE
Confidence            34789999999888 99999999999998866332  5777776666544 455567888999884

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=94.19  E-value=0.11  Score=42.76  Aligned_cols=57  Identities=9%  Similarity=0.178  Sum_probs=43.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch----hhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR----DKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~----e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|+...||+|+.....|.+.    +.+++.+.|..+...    +.+++..+...+|.+.++|+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~   62 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKEL----GVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGK   62 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHc----CCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCE
Confidence            5577777799998777777655    779999999998763    34666667788999888874

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=94.10  E-value=0.11  Score=46.75  Aligned_cols=58  Identities=9%  Similarity=-0.099  Sum_probs=44.9

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEec-----CCchhhhhhccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGK-----STKRDKCGESWQPLQL  561 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~-----d~~~e~~~~~~~~~~~  561 (570)
                      ..||.+.|||-+. |++|+.-.+.|.++|++. +..++++.|+.     +++.+.+++.++.-++
T Consensus        21 ~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~   85 (126)
T cd03012          21 LRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGI   85 (126)
T ss_pred             hCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCC
Confidence            4789888888666 999999999999999874 46899999975     3456667666654333

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=94.06  E-value=0.093  Score=43.81  Aligned_cols=61  Identities=8%  Similarity=0.163  Sum_probs=48.2

Q ss_pred             CCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          505 EGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       505 egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      +..-|-||....|++|++=    +++.++.|+++|.+-|+++...+.+++......+|.+.++|+
T Consensus         6 ~~~~V~ly~~~~Cp~C~~a----k~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~   66 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKA----KATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGK   66 (79)
T ss_pred             CCCCEEEEECCCCHhHHHH----HHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCE
Confidence            4556889999999999654    444456699999999998877767776667788999998885

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=94.01  E-value=0.12  Score=46.24  Aligned_cols=62  Identities=8%  Similarity=-0.035  Sum_probs=49.2

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +.+++.+.+||.++ |++|+.+.+.+.+++++.. ++.++.|..|+..+ +.+.+++..+||+++
T Consensus        19 i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~-l~~~~~v~~vPt~l~   81 (113)
T cd02989          19 VKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPF-LVEKLNIKVLPTVIL   81 (113)
T ss_pred             HhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHH-HHHHCCCccCCEEEE
Confidence            34567888888877 9999999999999987643 36778888887664 556678899999875

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=94.01  E-value=0.15  Score=44.55  Aligned_cols=63  Identities=6%  Similarity=0.038  Sum_probs=49.9

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC------CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA------RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~------~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +.+++.+.++|.+. |++|++|.|.+.++++..      +..+.+..|..|... .+.+-+++-+.|++.+
T Consensus        15 i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-~l~~~~~v~~~Ptl~~   84 (108)
T cd02996          15 LQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-DIADRYRINKYPTLKL   84 (108)
T ss_pred             HhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-HHHHhCCCCcCCEEEE
Confidence            45678899999888 999999999999888641      135888888888765 4666778889998864

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=94.00  E-value=0.13  Score=43.26  Aligned_cols=46  Identities=15%  Similarity=0.015  Sum_probs=37.8

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTK  548 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~  548 (570)
                      ...||++.++|.+. |++|+.+.+.+.++.++. +.++.++.|+.|..
T Consensus        16 ~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~   63 (116)
T cd02966          16 DLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD   63 (116)
T ss_pred             HcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence            34588888888776 999999999999998764 36788999998875

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=93.98  E-value=0.037  Score=46.39  Aligned_cols=63  Identities=16%  Similarity=0.109  Sum_probs=44.2

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .-.+||.|.+|||++ |+||+.|...+   .++.+....+|-.+.|..++++...+-..  -..|++++
T Consensus        13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~--~~~P~~~~   79 (82)
T PF13899_consen   13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR--QGYPTFFF   79 (82)
T ss_dssp             HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH--CSSSEEEE
T ss_pred             HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC--ccCCEEEE
Confidence            347899999999999 99999998765   33333345789999988877665442111  33777654

...

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=93.90  E-value=0.09  Score=47.54  Aligned_cols=58  Identities=9%  Similarity=0.054  Sum_probs=44.6

Q ss_pred             ccCCeEEEEEecCC-Cch-HHHHHHHHHHHHhhCC----CCEEEEEEecCCc---hhhhhhcccccc
Q 008311          503 IKEGKYIFLYGGDD-VEW-VRKFTTAARSVANTAR----IPLEMVYVGKSTK---RDKCGESWQPLQ  560 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w-~r~FT~~l~~vy~~~~----~~fEiv~Vs~d~~---~e~~~~~~~~~~  560 (570)
                      -..||++.|+|.+. |++ |+.-.+.+.+++++.+    .++++++|+.|..   .+.++++++..+
T Consensus        19 ~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~   85 (142)
T cd02968          19 DLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFG   85 (142)
T ss_pred             HhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhC
Confidence            34789888888666 998 9999999999987633    3699999998753   466666666553

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=93.80  E-value=0.14  Score=45.34  Aligned_cols=58  Identities=9%  Similarity=0.020  Sum_probs=46.8

Q ss_pred             CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ++.+.++|.+. |++|+.+.+.+.+++++.. .+..+.|..++.  .+.+.+++-.+|++++
T Consensus        24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~--~l~~~~~i~~~Pt~~~   82 (113)
T cd02957          24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA--FLVNYLDIKVLPTLLV   82 (113)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh--HHHHhcCCCcCCEEEE
Confidence            57888888877 9999999999999987743 355677777765  7777888889999875

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=93.77  E-value=0.67  Score=47.49  Aligned_cols=101  Identities=11%  Similarity=0.076  Sum_probs=55.4

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec--ccCC-C-----CCChhh-HHHHHHHHcCC
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI--VDHF-I-----HWDDPT-QKKFETLQSSM  413 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI--vD~s-~-----~w~D~~-~~~F~~~~~~M  413 (570)
                      .+|+++..|+...||.|+++-  +.++.+.         .+++|.++++  ...+ .     -|...+ .+.|+.+....
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~---------g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~  186 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS---------GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASG  186 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc---------CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhh
Confidence            578999999999999999987  5443221         2466766653  2110 0     011112 22333322211


Q ss_pred             CceeeccccccChH------HHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          414 PWYTVYHPTLIDRA------VIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       414 PW~aV~fP~l~D~~------~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                      .-..+..+.....+      ....+.+.+|++|.|++|+.|.+|++.
T Consensus       187 ~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~  233 (251)
T PRK11657        187 GKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQ  233 (251)
T ss_pred             hccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEE
Confidence            11000110000111      123577889999999999999999863

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=93.58  E-value=0.18  Score=43.58  Aligned_cols=63  Identities=11%  Similarity=0.009  Sum_probs=45.1

Q ss_pred             CCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          505 EGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       505 egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      +.-.|-+|.+..|+||+.--+.+.++....+ ++++..+..|...+ ..+-++++++|+++++|+
T Consensus        12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e-~a~~~~V~~vPt~vidG~   74 (89)
T cd03026          12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQD-EVEERGIMSVPAIFLNGE   74 (89)
T ss_pred             CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHH-HHHHcCCccCCEEEECCE
Confidence            3346888888889999998888888876532 34444444444444 344678999999999986

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=93.48  E-value=0.13  Score=50.10  Aligned_cols=55  Identities=13%  Similarity=0.141  Sum_probs=41.3

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQ  560 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~  560 (570)
                      ...||.+.|||.+. |++|++..|.+.+++++.+  +++++|+.| +.+..++.++..+
T Consensus        71 ~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~-~~~~~~~~~~~~~  126 (189)
T TIGR02661        71 IAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDG-TPAEHRRFLKDHE  126 (189)
T ss_pred             hcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCC-CHHHHHHHHHhcC
Confidence            45899999888777 9999999999999987643  678888854 4455555555443

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=93.32  E-value=0.14  Score=45.29  Aligned_cols=41  Identities=17%  Similarity=0.091  Sum_probs=32.1

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecC
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKS  546 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d  546 (570)
                      ....||.+.|||.+. |++|+.+.+.+.+++++    ++++.|+-|
T Consensus        16 ~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~----~~~i~i~~~   57 (123)
T cd03011          16 ESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD----YPVVSVALR   57 (123)
T ss_pred             HHhCCCEEEEEEECCcChhhhhhChHHHHHHhh----CCEEEEEcc
Confidence            346788888888777 99999999999999876    455555544

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=93.28  E-value=0.23  Score=47.25  Aligned_cols=44  Identities=7%  Similarity=0.190  Sum_probs=34.1

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTK  548 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~  548 (570)
                      ..-+++.-++|-+. |+|||+..|.+.+++++.+  ++++.|+-|+.
T Consensus        47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~   91 (153)
T TIGR02738        47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQ   91 (153)
T ss_pred             hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCC
Confidence            33445556667666 9999999999999998754  78889888764

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=93.26  E-value=0.14  Score=41.49  Aligned_cols=57  Identities=7%  Similarity=0.100  Sum_probs=40.6

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhccccc-cccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPL-QLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~-~~~~~~~~~~  569 (570)
                      |-||+...|++|++--.    +.++.++++|.+-|..+. ..+++.+..+.. ..|.++++|+
T Consensus         2 i~ly~~~~Cp~C~~ak~----~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~   60 (75)
T cd03418           2 VEIYTKPNCPYCVRAKA----LLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDV   60 (75)
T ss_pred             EEEEeCCCChHHHHHHH----HHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCE
Confidence            56898888999966444    445569999999998762 223444444544 8999999885

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=93.25  E-value=0.16  Score=42.16  Aligned_cols=56  Identities=16%  Similarity=0.283  Sum_probs=43.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+ +|..|+-|...-..+.++.+..+.++|++-+   ...+++ .-++++..|+++++|+
T Consensus         3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~-~~ygv~~vPalvIng~   58 (76)
T PF13192_consen    3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEI-EKYGVMSVPALVINGK   58 (76)
T ss_dssp             EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHH-HHTT-SSSSEEEETTE
T ss_pred             EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHH-HHcCCCCCCEEEECCE
Confidence            456 5777999998888888888877888888886   233344 7789999999999996

...

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=93.14  E-value=0.25  Score=47.03  Aligned_cols=61  Identities=7%  Similarity=-0.042  Sum_probs=47.8

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhcccccc------cccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESWQPLQ------LKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~~~~~------~~~~~~  566 (570)
                      .++.+.++|.+. |++|+.+.|.+.+++++. +.++.++.|.-|+..+- .+.+++-.      +||+++
T Consensus        46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~l-a~~~~V~~~~~v~~~PT~il  114 (152)
T cd02962          46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNV-AEKFRVSTSPLSKQLPTIIL  114 (152)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHH-HHHcCceecCCcCCCCEEEE
Confidence            467888899888 999999999999999874 45699999998887654 44455555      788764

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=93.14  E-value=0.19  Score=40.86  Aligned_cols=58  Identities=12%  Similarity=0.213  Sum_probs=46.1

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          508 YIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       508 ~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      -|-||....||+|++    ++++-++.|++++.+-|.++...+.+++.-+....|.+.++|+
T Consensus         2 ~v~lys~~~Cp~C~~----ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~   59 (72)
T cd03029           2 SVSLFTKPGCPFCAR----AKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGE   59 (72)
T ss_pred             eEEEEECCCCHHHHH----HHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCE
Confidence            367898888999954    5555566799999999988776666766678889999999885

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=93.00  E-value=0.25  Score=42.34  Aligned_cols=61  Identities=8%  Similarity=0.084  Sum_probs=46.7

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+|+. .++|.+. |++|+++.|.+.++++.. +..+.+..|..++..+ +.+.+++-..|++++
T Consensus        15 ~~~~~-lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~-~~~~~~i~~~Pt~~~   77 (101)
T cd02994          15 LEGEW-MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG-LSGRFFVTALPTIYH   77 (101)
T ss_pred             hCCCE-EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh-HHHHcCCcccCEEEE
Confidence            35664 5888787 999999999999998763 4568888888776554 555667888888865

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=92.90  E-value=0.18  Score=41.12  Aligned_cols=55  Identities=13%  Similarity=0.203  Sum_probs=41.5

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch-hhhhhccccccccccccCCC
Q 008311          510 FLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR-DKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       510 ~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~-e~~~~~~~~~~~~~~~~~~~  569 (570)
                      -+|+...|++|++    +++..++.|++||.+-|..+... +.+++ ++....|.++++|+
T Consensus         2 ~ly~~~~Cp~C~~----ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~g~~~vP~v~~~g~   57 (72)
T TIGR02194         2 TVYSKNNCVQCKM----TKKALEEHGIAFEEINIDEQPEAIDYVKA-QGFRQVPVIVADGD   57 (72)
T ss_pred             EEEeCCCCHHHHH----HHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCcccCEEEECCC
Confidence            4899999999965    44444567999999999877633 34444 47778999999875

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=92.79  E-value=0.2  Score=39.48  Aligned_cols=57  Identities=16%  Similarity=0.112  Sum_probs=40.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|++..|++|+.-.+.+.    +.+..++.+-+..+.. .+++.+..+...+|++++.|+
T Consensus         2 i~lf~~~~C~~C~~~~~~l~----~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~   59 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLT----SKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHK   59 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHH----HCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCE
Confidence            56888888999998665554    4577777666654432 234667788899999998874

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=92.69  E-value=0.5  Score=46.03  Aligned_cols=98  Identities=17%  Similarity=0.126  Sum_probs=51.9

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccC--C-----CCCChhh-HHHHHHHHcCCC
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDH--F-----IHWDDPT-QKKFETLQSSMP  414 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~--s-----~~w~D~~-~~~F~~~~~~MP  414 (570)
                      .||+++..|+...||.|+.+.  |.+    ..     .+-.+.++.+|+...  |     .-|...+ .+.|.+.....+
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~-----~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~  146 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKP----NA-----DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGK  146 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhh----cc-----CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCC
Confidence            488999999999999999987  544    11     122344455554321  0     0011111 233433322211


Q ss_pred             c-eeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          415 W-YTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       415 W-~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                      - -....- ..+.+....+.+.+|+++.|++++-  +|+++
T Consensus       147 ~~~~~~~~-~~~i~~~~~l~~~~gi~gtPtii~~--~G~~~  184 (197)
T cd03020         147 VPPPAASC-DNPVAANLALGRQLGVNGTPTIVLA--DGRVV  184 (197)
T ss_pred             CCCCcccc-CchHHHHHHHHHHcCCCcccEEEEC--CCeEe
Confidence            0 001100 0112234477889999999999843  47664

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PRK10638 glutaredoxin 3; Provisional

Probab=92.65  E-value=0.19  Score=42.17  Aligned_cols=58  Identities=7%  Similarity=0.196  Sum_probs=45.1

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhccccccccccccCCC
Q 008311          508 YIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       508 ~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      .|-+|+...|++|+.-    +++.++.+.+++.+-|..++ ..+.+.+.-.....|.+.++|+
T Consensus         3 ~v~ly~~~~Cp~C~~a----~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~   61 (83)
T PRK10638          3 NVEIYTKATCPFCHRA----KALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQ   61 (83)
T ss_pred             cEEEEECCCChhHHHH----HHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence            3669998999999654    44445669999999998765 4566777777888999988885

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=92.38  E-value=0.26  Score=42.07  Aligned_cols=60  Identities=15%  Similarity=0.063  Sum_probs=47.7

Q ss_pred             CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccc--ccccccc
Q 008311          506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPL--QLKSLVT  566 (570)
Q Consensus       506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~--~~~~~~~  566 (570)
                      |+.+.++|.+. |++|+.+.+.+.+++++-+..+-.+.|..|... ++.+.++..  ++|++++
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~-~~~~~~~i~~~~~P~~~~   74 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG-RHLEYFGLKEEDLPVIAI   74 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH-HHHHHcCCChhhCCEEEE
Confidence            66666666655 999999999999999987777888888887743 466677777  8898875

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=92.37  E-value=0.18  Score=41.54  Aligned_cols=57  Identities=9%  Similarity=0.145  Sum_probs=43.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|+...||+|+    .++++.++.|.++|.+-|..+. ..+++++..+...+|.++++|+
T Consensus         1 v~ly~~~~Cp~C~----~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~   58 (79)
T TIGR02181         1 VTIYTKPYCPYCT----RAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDV   58 (79)
T ss_pred             CEEEecCCChhHH----HHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence            4588888899995    4555556679999999998764 3456666667889999999885

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=92.20  E-value=0.28  Score=39.47  Aligned_cols=57  Identities=11%  Similarity=0.121  Sum_probs=40.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch-hhhhhc-cccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR-DKCGES-WQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~-e~~~~~-~~~~~~~~~~~~~~  569 (570)
                      |-||+...|++|++.-+.|.+    .+..++.+=+.++... +.++.. .+...+|+++++|.
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~----~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g   60 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDK----LGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADG   60 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHH----cCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCC
Confidence            568988889999987776654    4788887776655432 344444 37889999987553

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=92.16  E-value=0.28  Score=43.97  Aligned_cols=60  Identities=7%  Similarity=0.022  Sum_probs=53.0

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+|.|-++|.+. |+|||.--|.+.+++.+-.. ...+-|.-|. -..+-+-+++..|||+++
T Consensus        20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde-~~~~~~~~~V~~~PTf~f   80 (106)
T KOG0907|consen   20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE-LEEVAKEFNVKAMPTFVF   80 (106)
T ss_pred             CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc-CHhHHHhcCceEeeEEEE
Confidence            369999999888 99999999999999877444 8888899998 888999999999999986

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=91.97  E-value=0.41  Score=34.75  Aligned_cols=57  Identities=9%  Similarity=0.040  Sum_probs=43.6

Q ss_pred             EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhh--hccccccccccccCC
Q 008311          511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCG--ESWQPLQLKSLVTSG  568 (570)
Q Consensus       511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~--~~~~~~~~~~~~~~~  568 (570)
                      +|++..|++|+...+.+.+. ...+..++++.++.+...+..+  ........|++++.+
T Consensus         3 ~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~   61 (69)
T cd01659           3 LFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFG   61 (69)
T ss_pred             EEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEe
Confidence            45566699999999999988 5556677777777777666555  477888889888765

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=91.89  E-value=1.3  Score=34.69  Aligned_cols=15  Identities=0%  Similarity=-0.099  Sum_probs=13.1

Q ss_pred             EEEecCCCHHhHHHH
Q 008311          351 LLISDLDISQEELSI  365 (570)
Q Consensus       351 L~FwAsWCpPCr~e~  365 (570)
                      +.|+..|||+|+...
T Consensus         2 ~vy~~~~C~~C~~~~   16 (60)
T PF00462_consen    2 VVYTKPGCPYCKKAK   16 (60)
T ss_dssp             EEEESTTSHHHHHHH
T ss_pred             EEEEcCCCcCHHHHH
Confidence            568999999999876

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=91.77  E-value=0.42  Score=46.35  Aligned_cols=58  Identities=7%  Similarity=0.091  Sum_probs=45.8

Q ss_pred             CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ++.|.++|.++ |++|+.+.+.+.+++++.. .+-.+.|..+..  .+-..+++..+|||++
T Consensus        83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~--~l~~~f~v~~vPTlll  141 (175)
T cd02987          83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT--GASDEFDTDALPALLV  141 (175)
T ss_pred             CcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch--hhHHhCCCCCCCEEEE
Confidence            45888999888 9999999999999997643 344556655554  6777889999999875

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.76  E-value=0.31  Score=49.22  Aligned_cols=170  Identities=9%  Similarity=0.111  Sum_probs=90.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++|.++++|||.||.+|.+-.  +..+-+..+          ...++.+        +.  ..|.               
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----------~~~~~k~--------~a--~~~~---------------   60 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----------NAQFLKL--------EA--EEFP---------------   60 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----------hheeeee--------hh--hhhh---------------
Confidence            889999999999999999866  444433332          1344443        11  1221               


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEE-C--CCCcEEccccchhHhhhcC---CCC-CCCchhHHHHhhhcCccccccccCC
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVL-D--PQGRVVSPNALHMMWIWGS---NAF-PFTSLREEALWKEETWRLELLVDGI  495 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVL-D--pqGkVv~~na~~~I~~~G~---~aF-PFt~~~~e~L~~e~~w~~~ll~d~~  495 (570)
                              .+.+.+.+.+.|..+.+ .  .-.++.+.+...++..+..   ... +........+.+..+=+..   + +
T Consensus        61 --------eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~---~-~  128 (227)
T KOG0911|consen   61 --------EISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNET---D-L  128 (227)
T ss_pred             --------HHHHHHHHhcCceeeeeecchhhhhhhccCcHHHHHHHHHhhhhcccccCCCCCcchhcccccchh---h-H
Confidence                    24555666677776665 2  1234444444444443221   110 1111111111110000000   1 2


Q ss_pred             CccccccccCCeEEEEEe-cCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccc-ccccccc
Q 008311          496 DPLVLDWIKEGKYIFLYG-GDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQP-LQLKSLV  565 (570)
Q Consensus       496 d~~i~~~~~egk~I~lYf-gad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~-~~~~~~~  565 (570)
                      |-.+...+...+ +-||- |.--.|=-.|..+++.+-+..+.+|+.+=|..|..   +|+.++. .+|||++
T Consensus       129 ~~~l~~lv~a~~-v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~Dee---lRqglK~fSdWPTfP  196 (227)
T KOG0911|consen  129 DNRLEKLVKAKP-VMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEE---LRQGLKEFSDWPTFP  196 (227)
T ss_pred             HHHHHHhcccCe-EEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHH---HHHHhhhhcCCCCcc
Confidence            223333334444 44444 55556666899999999999999999999988753   6665554 4677764

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=91.70  E-value=0.39  Score=42.92  Aligned_cols=62  Identities=10%  Similarity=-0.002  Sum_probs=47.0

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhC---CCCEEEEEEecCC-chhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTA---RIPLEMVYVGKST-KRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~---~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~  566 (570)
                      .++.+.++|.+. |++|+.|.+.+.++++..   ...+.+..|..+. ....+.+.++.-..|++++
T Consensus        18 ~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~l   84 (114)
T cd02992          18 SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRY   84 (114)
T ss_pred             CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEE
Confidence            347999999888 999999999999998752   2346666676543 3456777888888998875

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=91.55  E-value=1  Score=40.90  Aligned_cols=68  Identities=7%  Similarity=0.028  Sum_probs=43.6

Q ss_pred             cCCCEEEEEEecC----CCHHhHHHH-HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311          344 LRRKNVLLLISDL----DISQEELSI-LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV  418 (570)
Q Consensus       344 LkGKvVlL~FwAs----WCpPCr~e~-L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV  418 (570)
                      =.+|.+++||.+.    ||..|+.-+ =.++-+-++       .+|-++..++       ...+                
T Consensus        15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln-------~~fv~w~~dv-------~~~e----------------   64 (116)
T cd02991          15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN-------TRMLFWACSV-------AKPE----------------   64 (116)
T ss_pred             hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH-------cCEEEEEEec-------CChH----------------
Confidence            3689999999999    999997766 222222232       2463343332       1111                


Q ss_pred             ccccccChHHHHHHHHhCCCCCCceEEEECCCC
Q 008311          419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQG  451 (570)
Q Consensus       419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqG  451 (570)
                               + ..++..+++++.|++++|++++
T Consensus        65 ---------g-~~la~~l~~~~~P~~~~l~~~~   87 (116)
T cd02991          65 ---------G-YRVSQALRERTYPFLAMIMLKD   87 (116)
T ss_pred             ---------H-HHHHHHhCCCCCCEEEEEEecC
Confidence                     1 3467789999999999996443

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=91.12  E-value=0.39  Score=39.13  Aligned_cols=57  Identities=11%  Similarity=0.092  Sum_probs=45.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-||+...|++|++    ++++-++.|+++|.+=|.++.+ .+.+++..+....|.+.++|+
T Consensus         3 v~ly~~~~C~~C~k----a~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~   60 (73)
T cd03027           3 VTIYSRLGCEDCTA----VRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEK   60 (73)
T ss_pred             EEEEecCCChhHHH----HHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence            55888888999954    5555566799999999988654 557887778888899999885

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=91.06  E-value=0.37  Score=54.50  Aligned_cols=41  Identities=10%  Similarity=-0.062  Sum_probs=36.5

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEec
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGK  545 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~  545 (570)
                      +||.+.|+|-+. |+||+...|.|.+++++. ..+++++.|+.
T Consensus        55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~   97 (521)
T PRK14018         55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVAS   97 (521)
T ss_pred             CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEec
Confidence            799999999888 999999999999999864 46799999875

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=90.93  E-value=0.6  Score=37.54  Aligned_cols=16  Identities=0%  Similarity=-0.207  Sum_probs=13.4

Q ss_pred             EEEEecCCCHHhHHHH
Q 008311          350 LLLISDLDISQEELSI  365 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~  365 (570)
                      +..||++|||+|+...
T Consensus         2 v~ly~~~~C~~C~~~~   17 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLM   17 (77)
T ss_pred             EEEEECCCChhHHHHH
Confidence            3469999999999865

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=90.88  E-value=0.73  Score=43.60  Aligned_cols=60  Identities=15%  Similarity=0.119  Sum_probs=47.9

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLV  565 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~  565 (570)
                      +++.+-+-|+++ |+||+...|.|.+++++-+....++-|.-|... .+-+.++.-+.|+++
T Consensus        22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~-dla~~y~I~~~~t~~   82 (142)
T PLN00410         22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP-DFNTMYELYDPCTVM   82 (142)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH-HHHHHcCccCCCcEE
Confidence            678899999999 999999999999999887767888888888655 455555666455444

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.80  E-value=0.45  Score=50.04  Aligned_cols=58  Identities=5%  Similarity=0.008  Sum_probs=48.9

Q ss_pred             eEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccc
Q 008311          507 KYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLV  565 (570)
Q Consensus       507 k~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~  565 (570)
                      +-|-+||++. |++|+++||.|.++..+.++.|.++.|-.|.. ..|-..+++=++|+++
T Consensus        44 ~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~-p~vAaqfgiqsIPtV~  102 (304)
T COG3118          44 VPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE-PMVAAQFGVQSIPTVY  102 (304)
T ss_pred             CCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc-hhHHHHhCcCcCCeEE
Confidence            4678899999 99999999999999999999999999998874 3566667777777754

>PHA02125 thioredoxin-like protein

Probab=90.58  E-value=0.4  Score=39.53  Aligned_cols=50  Identities=14%  Similarity=0.075  Sum_probs=36.4

Q ss_pred             EEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCC
Q 008311          511 LYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSG  568 (570)
Q Consensus       511 lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~  568 (570)
                      +||++. |+||+.+-+.+.++      .++.+-|..|... .+.+.+++..+||++ .|
T Consensus         3 v~f~a~wC~~Ck~~~~~l~~~------~~~~~~vd~~~~~-~l~~~~~v~~~PT~~-~g   53 (75)
T PHA02125          3 YLFGAEWCANCKMVKPMLANV------EYTYVDVDTDEGV-ELTAKHHIRSLPTLV-NT   53 (75)
T ss_pred             EEEECCCCHhHHHHHHHHHHH------hheEEeeeCCCCH-HHHHHcCCceeCeEE-CC
Confidence            455555 99999999988654      3566666665544 556667999999998 55

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=90.34  E-value=0.51  Score=36.77  Aligned_cols=57  Identities=11%  Similarity=0.162  Sum_probs=42.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|+...|++|+.--..|.+    .+.+++.+-+..+. ..+.+++.......|.+.++|+
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~----~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~   59 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLES----LGIEFEEIDILEDGELREELKELSGWPTVPQIFINGE   59 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH----cCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence            458888889999776666544    47888887777665 3456777777788999988875

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PLN02309 5'-adenylylsulfate reductase

Probab=90.26  E-value=0.62  Score=51.95  Aligned_cols=63  Identities=5%  Similarity=0.040  Sum_probs=52.4

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecC-Cchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKS-TKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d-~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..|+.+.++|.+. |++||.+.+.+.+++++ .+..+.+.-|..| +..+-.++.+++-..||+++
T Consensus       363 ~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~  428 (457)
T PLN02309        363 NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILL  428 (457)
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEE
Confidence            4789999999999 99999999999999877 4556888999888 55555555788889999875

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=90.23  E-value=0.44  Score=44.09  Aligned_cols=62  Identities=6%  Similarity=0.062  Sum_probs=43.9

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccc--cccccccccC
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQ--PLQLKSLVTS  567 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~--~~~~~~~~~~  567 (570)
                      ..++-.+.++++ |+-|+.+.|.+.++++.. .++++-+++.|++.+.+.+++.  .-.+|++++-
T Consensus        40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~  104 (129)
T PF14595_consen   40 QKPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFL  104 (129)
T ss_dssp             -S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE
T ss_pred             CCCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEE
Confidence            445555556666 999999999999998874 3889999999999998888744  8889998875

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=90.12  E-value=0.61  Score=37.63  Aligned_cols=56  Identities=20%  Similarity=0.121  Sum_probs=44.0

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccC-CC
Q 008311          510 FLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTS-GK  569 (570)
Q Consensus       510 ~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~-~~  569 (570)
                      -||+...|++|++-.-.|    ++.|.+||.+.|...+..+++.+..-.-.+|.|+++ |.
T Consensus         2 ~ly~~~~~p~~~rv~~~L----~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~   58 (71)
T cd03060           2 ILYSFRRCPYAMRARMAL----LLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGT   58 (71)
T ss_pred             EEEecCCCcHHHHHHHHH----HHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCc
Confidence            478888899996644433    556999999999887767788887777789999885 75

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=89.81  E-value=0.61  Score=39.22  Aligned_cols=61  Identities=7%  Similarity=0.147  Sum_probs=45.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCC-chhhhhhccc--cccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKST-KRDKCGESWQ--PLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~-~~e~~~~~~~--~~~~~~~~~~~~  569 (570)
                      |-+|+...|++|++=-..|.++..+ .+..+|.+-+..+. ..+.+.+..+  +...|.+.++|+
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~   67 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQK   67 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCE
Confidence            6788888899999888888887654 58888888888653 2334555444  478999999986

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=89.58  E-value=0.75  Score=36.09  Aligned_cols=57  Identities=14%  Similarity=0.179  Sum_probs=40.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|+...|++|+.....+    ++.+.+++.+-+..+.. .+.+++.......|+++++|+
T Consensus         2 v~l~~~~~c~~c~~~~~~l----~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~   59 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFL----DERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDE   59 (73)
T ss_pred             EEEEeCCCChhHHHHHHHH----HHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCE
Confidence            4578888899998755544    44688888888765432 345666667789999988774

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=89.58  E-value=2.3  Score=34.72  Aligned_cols=85  Identities=12%  Similarity=-0.077  Sum_probs=46.5

Q ss_pred             EEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCC--CChhhHHHHHHHHc-CCCceeeccccccC
Q 008311          351 LLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIH--WDDPTQKKFETLQS-SMPWYTVYHPTLID  425 (570)
Q Consensus       351 L~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~--w~D~~~~~F~~~~~-~MPW~aV~fP~l~D  425 (570)
                      ..|+...||.|...-  |.++-...       ..++++++.++.-....  .+............ ...|   .+   .+
T Consensus         2 ~~f~d~~Cp~C~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~   68 (98)
T cd02972           2 VEFFDPLCPYCYLFEPELEKLLYAD-------DGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFE---AL---HE   68 (98)
T ss_pred             eEEECCCCHhHHhhhHHHHHHHhhc-------CCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHH---HH---HH
Confidence            579999999999988  66655222       34688888876321100  01111111111111 0111   11   11


Q ss_pred             hHHHHHHHHhCCCCCCceEEEEC
Q 008311          426 RAVIRYVKDVWHFKNKPILVVLD  448 (570)
Q Consensus       426 ~~~~~~L~~~y~V~~IPtlVVLD  448 (570)
                      .-....+.+.+|+.|.|++++-|
T Consensus        69 ~l~~~~~~~~~g~~g~Pt~v~~~   91 (98)
T cd02972          69 ALADTALARALGVTGTPTFVVNG   91 (98)
T ss_pred             HHHHHHHHHHcCCCCCCEEEECC
Confidence            11234677889999999999977

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=89.55  E-value=0.68  Score=35.34  Aligned_cols=55  Identities=16%  Similarity=0.046  Sum_probs=42.3

Q ss_pred             EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhh-hhhccccccccccccCCC
Q 008311          511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDK-CGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~-~~~~~~~~~~~~~~~~~~  569 (570)
                      ||+...|++|+    +++.+.+..++++|.+.+..++..+. +++....-.+|.|..+|.
T Consensus         3 ly~~~~~~~~~----~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~   58 (71)
T cd00570           3 LYYFPGSPRSL----RVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGL   58 (71)
T ss_pred             EEeCCCCccHH----HHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCE
Confidence            67777799997    44445566699999999998765543 777778889999988874

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.46  E-value=0.68  Score=42.76  Aligned_cols=40  Identities=8%  Similarity=0.087  Sum_probs=26.2

Q ss_pred             CCCEEEEEEec--------CCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          345 RRKNVLLLISD--------LDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       345 kGKvVlL~FwA--------sWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      +||.+.++|.|        +|||.|+.-.  +.+..++.       ..+..+|-|-+
T Consensus        24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a-------p~~~~~v~v~V   73 (128)
T KOG3425|consen   24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA-------PEDVHFVHVYV   73 (128)
T ss_pred             CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC-------CCceEEEEEEe
Confidence            56667777776        6999999877  44444432       34566666653

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=89.39  E-value=0.76  Score=46.54  Aligned_cols=60  Identities=10%  Similarity=0.036  Sum_probs=47.6

Q ss_pred             CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ++.+.++|.+. |++||.+.|.+.+++++.+..+.+..|..++.. .+.+-+++-+.|++++
T Consensus        52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~-~l~~~~~I~~~PTl~~  112 (224)
T PTZ00443         52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL-NLAKRFAIKGYPTLLL  112 (224)
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH-HHHHHcCCCcCCEEEE
Confidence            56788889888 999999999999999876666777777666544 4566678888898764

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=89.39  E-value=3.7  Score=41.65  Aligned_cols=95  Identities=16%  Similarity=0.201  Sum_probs=53.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEE--ecccCCC--------CCChh-hHHHHHHHHc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWI--PIVDHFI--------HWDDP-TQKKFETLQS  411 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~I--sIvD~s~--------~w~D~-~~~~F~~~~~  411 (570)
                      .||+++..|+...||.|++.-  |.++.+          .+++|.++  |+.....        -|... ..+.|.+...
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----------~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~  175 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----------LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMK  175 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhc----------CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHc
Confidence            578999999999999999986  444321          24666665  4311110        12221 2244444332


Q ss_pred             CCCceeeccccc-cChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          412 SMPWYTVYHPTL-IDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       412 ~MPW~aV~fP~l-~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                      .-+   ++-... .+.+....+.+.+||+|.|++++-  +|+++
T Consensus       176 ~~~---~~~~~c~~~v~~~~~la~~lgi~gTPtiv~~--~G~~~  214 (232)
T PRK10877        176 GKD---VSPASCDVDIADHYALGVQFGVQGTPAIVLS--NGTLV  214 (232)
T ss_pred             CCC---CCcccccchHHHhHHHHHHcCCccccEEEEc--CCeEe
Confidence            211   110000 122345578899999999999853  67765

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=89.37  E-value=0.71  Score=51.82  Aligned_cols=31  Identities=13%  Similarity=-0.062  Sum_probs=26.9

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhh
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRL  375 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~  375 (570)
                      ....|++-|.|.||+.|.+..  ..+.-..+++
T Consensus        41 ~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke   73 (493)
T KOG0190|consen   41 GHEFVLVEFYAPWCGHCKALAPEYEKAATELKE   73 (493)
T ss_pred             cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhc
Confidence            347899999999999999988  8888888874

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=88.92  E-value=2  Score=39.36  Aligned_cols=20  Identities=5%  Similarity=0.301  Sum_probs=17.2

Q ss_pred             HHHHHhCCCC--CCceEEEECC
Q 008311          430 RYVKDVWHFK--NKPILVVLDP  449 (570)
Q Consensus       430 ~~L~~~y~V~--~IPtlVVLDp  449 (570)
                      +.|.++|+|+  +.||+.++..
T Consensus        68 ~~L~~~y~I~~~gyPTl~lF~~   89 (116)
T cd03007          68 MELGERYKLDKESYPVIYLFHG   89 (116)
T ss_pred             HHHHHHhCCCcCCCCEEEEEeC
Confidence            4588999999  9999998874

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=88.77  E-value=0.68  Score=41.68  Aligned_cols=58  Identities=17%  Similarity=0.096  Sum_probs=42.6

Q ss_pred             ccCCeEEEEEec--CCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhccccccc
Q 008311          503 IKEGKYIFLYGG--DDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       503 ~~egk~I~lYfg--ad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      ...||.+-|+|.  ..|++|+.=.+.+.+.+++ .+..+++|.|+.|.+ +.++++.+..++
T Consensus        20 ~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~-~~~~~~~~~~~~   80 (140)
T cd03017          20 DLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSV-ESHAKFAEKYGL   80 (140)
T ss_pred             HhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHhCC
Confidence            345888777774  4599999988888888865 345789999999865 566666655443

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=88.59  E-value=0.92  Score=50.69  Aligned_cols=63  Identities=3%  Similarity=-0.008  Sum_probs=50.8

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCch-hhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKR-DKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~-e~~~~~~~~~~~~~~~~  566 (570)
                      ..++.+.++|.+. |++||.+.|.+.+++++. +..+.++.|.-|..+ +...+.+++-.+||+++
T Consensus       369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~  434 (463)
T TIGR00424       369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF  434 (463)
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence            3789999999999 999999999999999873 445788888888654 34456778888998864

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=88.53  E-value=0.8  Score=42.73  Aligned_cols=62  Identities=10%  Similarity=0.063  Sum_probs=39.3

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHH---HHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAAR---SVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~---~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      -.+||.|.|||++| |+||+.+....-   ++.+....+|=+|-+--|..+.....  .....|++++
T Consensus        20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~--~g~~vPtivF   85 (130)
T cd02960          20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSP--DGQYVPRIMF   85 (130)
T ss_pred             HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCc--cCcccCeEEE
Confidence            46899999999999 999999877542   34343455676555554433211111  1246788775

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=88.52  E-value=1.2  Score=47.05  Aligned_cols=42  Identities=12%  Similarity=0.096  Sum_probs=31.0

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      ..+|+|+|.|.||+--+...  +.+.-..+++..    .+=.+||-.+
T Consensus        13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~----P~~kvvwg~V   56 (375)
T KOG0912|consen   13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEF----PEGKVVWGKV   56 (375)
T ss_pred             ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhC----CCcceEEEEc
Confidence            46899999999999888777  667667776532    1245888875

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=88.51  E-value=2.6  Score=42.40  Aligned_cols=107  Identities=14%  Similarity=0.191  Sum_probs=61.3

Q ss_pred             CCcccCCCCCeeeccc-cCCCE--EEEEEe-----cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCC
Q 008311          328 QPLVDGSTKRRVNIEV-LRRKN--VLLLIS-----DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIH  397 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~-LkGKv--VlL~Fw-----AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~  397 (570)
                      .-.|+|.+|+ |+|++ |.|+-  |+-.|-     ..-|+.|-..+  +......+.+      .+.-++.||=   .  
T Consensus        48 ~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~------rd~tfa~vSr---a--  115 (211)
T PF05988_consen   48 DYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHA------RDTTFAVVSR---A--  115 (211)
T ss_pred             CeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHh------CCceEEEEeC---C--
Confidence            3568999996 99988 56763  333332     45699999988  7677777753      3577788872   1  


Q ss_pred             CChhhHHHHHHH-HcCCCceeeccccccChHHHHHHHHhCCC-----CCCceEEEEC-CCCcEEcc
Q 008311          398 WDDPTQKKFETL-QSSMPWYTVYHPTLIDRAVIRYVKDVWHF-----KNKPILVVLD-PQGRVVSP  456 (570)
Q Consensus       398 w~D~~~~~F~~~-~~~MPW~aV~fP~l~D~~~~~~L~~~y~V-----~~IPtlVVLD-pqGkVv~~  456 (570)
                       --+....|++. .-.+|||+..-         ......|++     ...|-+-++= ..|+|-+.
T Consensus       116 -P~~~i~afk~rmGW~~pw~Ss~g---------s~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhT  171 (211)
T PF05988_consen  116 -PLEKIEAFKRRMGWTFPWYSSYG---------SDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHT  171 (211)
T ss_pred             -CHHHHHHHHHhcCCCceEEEcCC---------CcccccccceeccCCCceeEEEEEEcCCEEEEE
Confidence             12233444332 22455655431         123344665     4567555444 33666543

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=88.48  E-value=0.93  Score=41.33  Aligned_cols=54  Identities=13%  Similarity=0.004  Sum_probs=41.1

Q ss_pred             cCCeEEEEEe-cC-CCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhcccc
Q 008311          504 KEGKYIFLYG-GD-DVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQP  558 (570)
Q Consensus       504 ~egk~I~lYf-ga-d~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~  558 (570)
                      ..||.+-|+| +. .|++|+.=.+.+.++++. .+..++++.|+.+++.. +++.++.
T Consensus        26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~-~~~~~~~   82 (146)
T PF08534_consen   26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP-VREFLKK   82 (146)
T ss_dssp             GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH-HHHHHHH
T ss_pred             hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH-HHHHHHh
Confidence            6677644444 44 799999999999999876 67779999999888766 5555544

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=88.47  E-value=0.45  Score=53.32  Aligned_cols=62  Identities=15%  Similarity=0.122  Sum_probs=40.8

Q ss_pred             hHHHHHHHhhccCC----CCCcccCCCCCeeecc------c---cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHh
Q 008311          313 NMKVLKALIYAKDD----LQPLVDGSTKRRVNIE------V---LRRKNVLLLISDLDISQEELSI--LEQIYNESR  374 (570)
Q Consensus       313 ~~~~Lk~LI~~k~~----~~pl~~g~~G~~Vsls------~---LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk  374 (570)
                      +..+.+.+..++-.    .+|+-.+.++.+|..=      +   =.+|.||+-|.|.||++|.+.-  ++++-++++
T Consensus       338 ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~  414 (493)
T KOG0190|consen  338 IESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYK  414 (493)
T ss_pred             HHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhc
Confidence            45556666655443    2455555554434321      1   1579999999999999999987  666666665

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=88.34  E-value=1.3  Score=38.76  Aligned_cols=56  Identities=5%  Similarity=0.003  Sum_probs=42.0

Q ss_pred             cccCCeEEEEEe-cC-CCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhcccc
Q 008311          502 WIKEGKYIFLYG-GD-DVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQP  558 (570)
Q Consensus       502 ~~~egk~I~lYf-ga-d~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~  558 (570)
                      .-+.||++.|+| +. .|+.|+.-.+.+.+.+++ ....+.++.|+.|.++ ++++..+.
T Consensus        21 ~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~-~~~~~~~~   79 (124)
T PF00578_consen   21 SDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPE-EIKQFLEE   79 (124)
T ss_dssp             GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHH-HHHHHHHH
T ss_pred             HHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccccc-chhhhhhh
Confidence            345788776666 33 599999999999999976 4568999999997766 44444443

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=87.87  E-value=6.8  Score=37.71  Aligned_cols=118  Identities=17%  Similarity=0.179  Sum_probs=74.1

Q ss_pred             CcccCCCCCeeeccccCCCEEEEE-EecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLL-ISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~-FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      ..+.+.+...++++++.||..+++ |=+-+-|-|...+ ++|-++...     -.+..|+-||. |     ..=.+++|=
T Consensus        27 ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qv-r~Fn~~aa~-----~~~~~Vl~IS~-D-----LPFAq~RfC   94 (158)
T COG2077          27 FTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQV-RKFNEEAAK-----LGNTVVLCISM-D-----LPFAQKRFC   94 (158)
T ss_pred             eEEEcCcccceeccccCCceEEEEEccCCCCchhhHHH-HHHHHHHhc-----cCCcEEEEEeC-C-----ChhHHhhhh
Confidence            445688889999999999876665 5555788898887 445555431     24688999996 3     233455553


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCC--CCCc-------eEEEECCCCcEEccccchhHhh
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHF--KNKP-------ILVVLDPQGRVVSPNALHMMWI  464 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V--~~IP-------tlVVLDpqGkVv~~na~~~I~~  464 (570)
                      .- ..+.- .++   +.|- +.+..-+.||+  ..-|       ..+|+|.+|+|+..+-...|.+
T Consensus        95 ~a-eGi~n-v~~---lSd~-r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~eit~  154 (158)
T COG2077          95 GA-EGIEN-VIT---LSDF-RDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVPEITE  154 (158)
T ss_pred             hh-cCccc-ceE---hhhh-hhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccchhhc
Confidence            21 11111 111   1121 23456677875  3444       6789999999999877666543

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=87.77  E-value=1.5  Score=36.86  Aligned_cols=34  Identities=9%  Similarity=0.198  Sum_probs=25.1

Q ss_pred             EEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          350 LLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      +..|+.+|||+|+.--  |.++..++        .++++..+++
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~--------~~i~~~~idi   38 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEER--------DDFDYRYVDI   38 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhcccc--------cCCcEEEEEC
Confidence            4569999999999987  77776543        2466777776

>PRK10329 glutaredoxin-like protein; Provisional

Probab=87.46  E-value=1.2  Score=37.68  Aligned_cols=56  Identities=14%  Similarity=0.201  Sum_probs=41.1

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|...+|++|+.    +++..++.|++||.+-|..|.. .+.++. .+.-.+|.+++.|.
T Consensus         3 v~lYt~~~Cp~C~~----ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~   59 (81)
T PRK10329          3 ITIYTRNDCVQCHA----TKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDL   59 (81)
T ss_pred             EEEEeCCCCHhHHH----HHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCE
Confidence            56999999999966    4444466799999999987653 334444 36678888887763

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=87.20  E-value=1.3  Score=39.94  Aligned_cols=46  Identities=17%  Similarity=0.331  Sum_probs=36.4

Q ss_pred             CeEEEEEe-cCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhh
Q 008311          506 GKYIFLYG-GDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDK  551 (570)
Q Consensus       506 gk~I~lYf-gad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~  551 (570)
                      ++.+.+++ +..|++|+.-.+.|.+.+++ .+..+++|.|+.|+.++.
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~   71 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKL   71 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHH
Confidence            45666665 55699999999999999976 356799999998876543

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=87.20  E-value=1.3  Score=40.24  Aligned_cols=45  Identities=11%  Similarity=-0.090  Sum_probs=36.3

Q ss_pred             cCCeEEEEEe--cCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch
Q 008311          504 KEGKYIFLYG--GDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR  549 (570)
Q Consensus       504 ~egk~I~lYf--gad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~  549 (570)
                      ..||.+-|||  |.+|++|+.=.+.+.+.+++. ..++++-|+.|+++
T Consensus        24 ~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~~~vi~Is~d~~~   70 (143)
T cd03014          24 FAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-DNTVVLTISADLPF   70 (143)
T ss_pred             hCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEECCCHH
Confidence            4677766666  555999999999999999875 37999999988754

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=87.19  E-value=1.2  Score=40.26  Aligned_cols=39  Identities=15%  Similarity=0.170  Sum_probs=29.5

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      .+++++..|+..+||.|+.+-  |.+++.++.        ++.+++.++
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~--------~~~~~~~~~   44 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP--------DVRVVFKEF   44 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC--------CceEEEEeC
Confidence            478999999999999999987  777665442        356666554

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=86.53  E-value=1.5  Score=41.70  Aligned_cols=57  Identities=11%  Similarity=-0.108  Sum_probs=43.3

Q ss_pred             cCCeEEEEEe--cCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccc
Q 008311          504 KEGKYIFLYG--GDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLK  562 (570)
Q Consensus       504 ~egk~I~lYf--gad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~  562 (570)
                      ..||.+-|+|  +..|++|+.=.+.+.+.|++.+ +++++-||.|.+ +..++..+..+++
T Consensus        42 ~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~-~~~~~f~~~~~~~  100 (167)
T PRK00522         42 FAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLP-FAQKRFCGAEGLE  100 (167)
T ss_pred             hCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCH-HHHHHHHHhCCCC
Confidence            4687665555  5569999999999999988753 899999999876 3446666666654

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=86.28  E-value=1.2  Score=39.05  Aligned_cols=59  Identities=8%  Similarity=0.117  Sum_probs=42.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcc----ccccccccccCCC
Q 008311          507 KYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESW----QPLQLKSLVTSGK  569 (570)
Q Consensus       507 k~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~----~~~~~~~~~~~~~  569 (570)
                      .-|-+|+-..||+|++    ++++-++.+++|+.+-|..+....+.++.+    +.-.+|.+.++|+
T Consensus         8 ~~Vvvysk~~Cp~C~~----ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~   70 (99)
T TIGR02189         8 KAVVIFSRSSCCMCHV----VKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGK   70 (99)
T ss_pred             CCEEEEECCCCHHHHH----HHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCE
Confidence            4477998888999965    444555669999999999876544443333    4567788888885

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PTZ00056 glutathione peroxidase; Provisional

Probab=85.63  E-value=1.4  Score=43.39  Aligned_cols=58  Identities=9%  Similarity=0.116  Sum_probs=46.2

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecC-------Cchhhhhhccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKS-------TKRDKCGESWQPLQL  561 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d-------~~~e~~~~~~~~~~~  561 (570)
                      ..||.+-|.|-+. |++|++=.+.|.++|++ .+..++++-|+.+       ++.+.+++.++..++
T Consensus        37 ~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~  103 (199)
T PTZ00056         37 LKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI  103 (199)
T ss_pred             hCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC
Confidence            4689888888777 99999999999999976 4566999999864       455778887766544

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=85.62  E-value=4.5  Score=41.50  Aligned_cols=121  Identities=13%  Similarity=0.219  Sum_probs=73.1

Q ss_pred             CCCCCcccCCCCCe-eecccc-C-CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCC
Q 008311          325 DDLQPLVDGSTKRR-VNIEVL-R-RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWD  399 (570)
Q Consensus       325 ~~~~pl~~g~~G~~-Vsls~L-k-GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~  399 (570)
                      .++-.-+...+|++ .++.++ + +++++|+|.+--|||-+.-+  ++++.+++.+     --+|-+|+|-=.-.++.|.
T Consensus        78 ~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d-----~adFl~VYI~EAHpsDgW~  152 (237)
T PF00837_consen   78 PAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD-----VADFLIVYIEEAHPSDGWA  152 (237)
T ss_pred             CCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh-----hhheehhhHhhhCcCCCcc
Confidence            33333344556666 899887 4 48999999999999999888  9999999974     2367777762100112221


Q ss_pred             -------------hhhH-HHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCc-eEEEECCCCcEEcccc
Q 008311          400 -------------DPTQ-KKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKP-ILVVLDPQGRVVSPNA  458 (570)
Q Consensus       400 -------------D~~~-~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IP-tlVVLDpqGkVv~~na  458 (570)
                                   -+++ ..-+.+....|    ..|.+.|. ......+.|+  ..| .++||. +|||+...|
T Consensus       153 ~~~~~~~i~qh~sledR~~aA~~l~~~~~----~~pi~vD~-mdN~~~~~Yg--A~PeRlyIi~-~gkv~Y~Gg  218 (237)
T PF00837_consen  153 FGNNPYEIPQHRSLEDRLRAAKLLKEEFP----QCPIVVDT-MDNNFNKAYG--ALPERLYIIQ-DGKVVYKGG  218 (237)
T ss_pred             CCCCceeecCCCCHHHHHHHHHHHHhhCC----CCCEEEEc-cCCHHHHHhC--CCcceEEEEE-CCEEEEeCC
Confidence                         1111 22223333333    34445564 3445566665  456 466664 999998765

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=84.91  E-value=1.6  Score=43.02  Aligned_cols=38  Identities=8%  Similarity=0.195  Sum_probs=30.5

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK  548 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~  548 (570)
                      +..|++..|++|++|.|.+++++++.+  |+++-|+-|.+
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~  110 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQ  110 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCC
Confidence            444567779999999999999998864  78888887643

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=84.62  E-value=0.92  Score=51.45  Aligned_cols=67  Identities=15%  Similarity=0.092  Sum_probs=47.2

Q ss_pred             CEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccccc
Q 008311          347 KNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLI  424 (570)
Q Consensus       347 KvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~  424 (570)
                      |.-+|-|.++|||.||.|.  .+++-+.++.       =-.||-|-.||=     -                        
T Consensus        58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~-------W~~vv~vaaVdC-----A------------------------  101 (606)
T KOG1731|consen   58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEK-------WRPVVRVAAVDC-----A------------------------  101 (606)
T ss_pred             hhHHHHHHHhhhhhhhhcchHHHHHHHHHhc-------ccceeEEEEeec-----c------------------------
Confidence            4567889999999999998  8887777752       123555554431     0                        


Q ss_pred             ChHHHHHHHHhCCCCCCceEEEECCC
Q 008311          425 DRAVIRYVKDVWHFKNKPILVVLDPQ  450 (570)
Q Consensus       425 D~~~~~~L~~~y~V~~IPtlVVLDpq  450 (570)
                      | +....+.+.|+|++.|++--.-|+
T Consensus       102 ~-~~N~~lCRef~V~~~Ptlryf~~~  126 (606)
T KOG1731|consen  102 D-EENVKLCREFSVSGYPTLRYFPPD  126 (606)
T ss_pred             c-hhhhhhHhhcCCCCCceeeecCCc
Confidence            0 012347888999999999998876

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=84.58  E-value=1.4  Score=53.98  Aligned_cols=43  Identities=14%  Similarity=-0.016  Sum_probs=37.7

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEec
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGK  545 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~  545 (570)
                      ...||++.|+|-+. |++||...|.|.++|++ .+..|+++-|+.
T Consensus       417 ~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~  461 (1057)
T PLN02919        417 DLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHS  461 (1057)
T ss_pred             hcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEec
Confidence            45799999999999 99999999999999987 456699999963

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=84.33  E-value=1.3  Score=40.92  Aligned_cols=58  Identities=9%  Similarity=0.004  Sum_probs=42.5

Q ss_pred             ccCCeEEEEEec--CCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhccccccc
Q 008311          503 IKEGKYIFLYGG--DDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       503 ~~egk~I~lYfg--ad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      ...||++-|+|.  ..|++|+.=.+.+.+.+++ .+..++++.|+.|.+ +.++++.+..++
T Consensus        27 ~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~-~~~~~~~~~~~~   87 (154)
T PRK09437         27 DFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP-EKLSRFAEKELL   87 (154)
T ss_pred             HhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHhCC
Confidence            357887777774  4599999888888888766 456799999998854 666666655443

>PHA03050 glutaredoxin; Provisional

Probab=84.22  E-value=2.1  Score=38.39  Aligned_cols=61  Identities=11%  Similarity=0.100  Sum_probs=43.0

Q ss_pred             CCeEEEEEecCCCchHHHHHHHHHHHHhhCCC---CEEEEEEecCCc----hhhhhhccccccccccccCCC
Q 008311          505 EGKYIFLYGGDDVEWVRKFTTAARSVANTARI---PLEMVYVGKSTK----RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       505 egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~---~fEiv~Vs~d~~----~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      .++.|-+|.-..||+|+.    ++++-++.++   +||.+-|.+..+    ++.+.+.-+--..|.+.++|+
T Consensus        11 ~~~~V~vys~~~CPyC~~----ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~   78 (108)
T PHA03050         11 ANNKVTIFVKFTCPFCRN----ALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKT   78 (108)
T ss_pred             ccCCEEEEECCCChHHHH----HHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCE
Confidence            345588998888999955    4444455465   899999997444    345555555568899988885

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=83.43  E-value=4.5  Score=37.07  Aligned_cols=48  Identities=13%  Similarity=0.062  Sum_probs=36.8

Q ss_pred             eeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          339 VNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       339 Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      ..+..-.+++++..|...-||+|+.+.  +.++.+++-+     ..++.+++.++
T Consensus         5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~-----~~~v~~~~~~~   54 (162)
T PF13462_consen    5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYID-----PGKVKFVFRPV   54 (162)
T ss_dssp             EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEES
T ss_pred             CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC-----CCceEEEEEEc
Confidence            345556789999999999999999987  7788888732     24788999876

...

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=83.34  E-value=2.5  Score=39.95  Aligned_cols=58  Identities=9%  Similarity=0.077  Sum_probs=44.2

Q ss_pred             CCeEEEEEecC-CCchHHHHHHHHHHHHhhC-CCCEEEEEEecCC-------chhhhhhcccccccc
Q 008311          505 EGKYIFLYGGD-DVEWVRKFTTAARSVANTA-RIPLEMVYVGKST-------KRDKCGESWQPLQLK  562 (570)
Q Consensus       505 egk~I~lYfga-d~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~-------~~e~~~~~~~~~~~~  562 (570)
                      .||.+-|||.+ .|+.|+.-.+.+.+++++. +.++++|.|+.|.       +.++++++++..+++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~   90 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYP   90 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCC
Confidence            67777666644 4999999999999999774 4689999999875       456777766655544

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=83.29  E-value=2.5  Score=37.33  Aligned_cols=66  Identities=11%  Similarity=0.051  Sum_probs=43.9

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecCC-chhhhhhccccccccccccC
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKSLVTS  567 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~~  567 (570)
                      .-.++|.+.+|+.++ |++|+.|....   .++.+..+.+|-.+-+.-++ ...++.+.+++-+.|++++-
T Consensus        13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i   83 (114)
T cd02958          13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII   83 (114)
T ss_pred             HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence            346899999999777 99999997532   22222233355555444433 34478888888899988753

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=82.69  E-value=2.9  Score=34.14  Aligned_cols=55  Identities=27%  Similarity=0.306  Sum_probs=45.6

Q ss_pred             EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      ||+...|++|++=.-.|    +..|+++|.+-|...+.++.+.+....-.+|.|+.+|.
T Consensus         1 Ly~~~~Sp~~~kv~~~l----~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~   55 (75)
T PF13417_consen    1 LYGFPGSPYSQKVRLAL----EEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGE   55 (75)
T ss_dssp             EEEETTSHHHHHHHHHH----HHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTE
T ss_pred             CCCcCCChHHHHHHHHH----HHcCCeEEEeccCcccchhHHHhhcccccceEEEECCE
Confidence            78889999997644444    55699999999998888889999988889999998774

...

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=82.49  E-value=4.3  Score=33.07  Aligned_cols=32  Identities=13%  Similarity=-0.011  Sum_probs=21.5

Q ss_pred             EEEecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          351 LLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       351 L~FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      +.|++.|||+|+..-  ++.+++       +.+|+++-|..
T Consensus         3 ~~y~~~~Cp~C~~~~--~~l~~~-------~~~~~~~~v~~   34 (82)
T cd03419           3 VVFSKSYCPYCKRAK--SLLKEL-------GVKPAVVELDQ   34 (82)
T ss_pred             EEEEcCCCHHHHHHH--HHHHHc-------CCCcEEEEEeC
Confidence            568999999998764  333333       23577777763

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=82.34  E-value=9.2  Score=39.51  Aligned_cols=118  Identities=17%  Similarity=0.169  Sum_probs=64.6

Q ss_pred             CcccC--CCCCeeeccc-cCCCE-EEEEEecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          329 PLVDG--STKRRVNIEV-LRRKN-VLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       329 pl~~g--~~G~~Vsls~-LkGKv-VlL~FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      |.+.|  .+|+.+++.+ ++||+ |+..|+.-|-..|...-...+.+++..+   .+..+++|-|++.+       .-.+
T Consensus       102 P~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~---~~~~~q~v~In~~e-------~~~k  171 (252)
T PF05176_consen  102 PNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQE---PYGRVQIVEINLIE-------NWLK  171 (252)
T ss_pred             CCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhC---CCCceEEEEEecch-------HHHH
Confidence            55555  5777888755 89996 3333444555444444444555555421   12389999999833       2222


Q ss_pred             HHH------HHHcCCC-ceeeccccccChHHHHHHHHhCCCCC--CceEEEECCCCcEEcc
Q 008311          405 KFE------TLQSSMP-WYTVYHPTLIDRAVIRYVKDVWHFKN--KPILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~------~~~~~MP-W~aV~fP~l~D~~~~~~L~~~y~V~~--IPtlVVLDpqGkVv~~  456 (570)
                      .|-      .+.+.+| +..-.|....+......+++..++.+  ..-.+|||++|+|.-.
T Consensus       172 ~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWa  232 (252)
T PF05176_consen  172 SWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWA  232 (252)
T ss_pred             HHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeC
Confidence            221      2334444 10011111111111346888888876  4668899999999754

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=82.13  E-value=2.1  Score=40.74  Aligned_cols=46  Identities=15%  Similarity=0.073  Sum_probs=38.0

Q ss_pred             cCCeEEEEEe--cCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCch
Q 008311          504 KEGKYIFLYG--GDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKR  549 (570)
Q Consensus       504 ~egk~I~lYf--gad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~  549 (570)
                      ..||++-|||  +..|++|+.-.+.+.+.|++ ....+.++.||.|...
T Consensus        27 ~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~   75 (173)
T cd03015          27 YKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHF   75 (173)
T ss_pred             hCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHH
Confidence            4689988888  56699999999999999876 3467999999987653

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=81.54  E-value=3  Score=34.03  Aligned_cols=60  Identities=13%  Similarity=0.066  Sum_probs=40.2

Q ss_pred             CeEEEEE-ecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccc--cccccccc
Q 008311          506 GKYIFLY-GGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQ--PLQLKSLV  565 (570)
Q Consensus       506 gk~I~lY-fgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~--~~~~~~~~  565 (570)
                      ++.+.+. ++..|+.|+.+.+.+.+++++.+..++++.+...+..+.....++  ...+|+++
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~   94 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLL   94 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEE
Confidence            6666665 455599999999999999987554666666666533334444444  55666665

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=81.10  E-value=3.3  Score=37.08  Aligned_cols=54  Identities=17%  Similarity=0.030  Sum_probs=40.4

Q ss_pred             ccCCeEEEEEe--cCCCchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhccc
Q 008311          503 IKEGKYIFLYG--GDDVEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYf--gad~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~~  557 (570)
                      ...||.+-|||  +..|++|+.-.+.+.+.|++. ...+++|.|+.|+++ ..++..+
T Consensus        19 ~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~-~~~~~~~   75 (140)
T cd02971          19 DFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPF-SHKAWAE   75 (140)
T ss_pred             HhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHh
Confidence            34688777777  445999999999999998763 457999999988654 4444444

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=80.69  E-value=3.1  Score=33.37  Aligned_cols=56  Identities=16%  Similarity=0.020  Sum_probs=41.2

Q ss_pred             EEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC---chhhhhhccccccccccccCCC
Q 008311          510 FLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST---KRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       510 ~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~---~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      -||+...|+.|+.    ++.+.++.|.+||.+.|.-.+   ..+.+++..-.-.+|.|+.+|.
T Consensus         2 ~Ly~~~~~~~~~~----v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~   60 (74)
T cd03045           2 DLYYLPGSPPCRA----VLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGF   60 (74)
T ss_pred             EEEeCCCCCcHHH----HHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCE
Confidence            3788888999974    444446679999999997433   3467887776778899987763

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=80.58  E-value=3.3  Score=37.68  Aligned_cols=57  Identities=14%  Similarity=-0.090  Sum_probs=39.2

Q ss_pred             cCC-eEEEEEe--cCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhccccccc
Q 008311          504 KEG-KYIFLYG--GDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       504 ~eg-k~I~lYf--gad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      ..| |.+-|+|  +..|++|+.=.+.+.+++++ .+.++.++.|+.|.++ .++++.+..++
T Consensus        25 ~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~-~~~~~~~~~~~   85 (149)
T cd03018          25 FRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPF-SLRAWAEENGL   85 (149)
T ss_pred             HcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHH-HHHHHHHhcCC
Confidence            445 6544444  55599999988899988876 3467999999987643 46655554433

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=80.46  E-value=4  Score=34.52  Aligned_cols=57  Identities=11%  Similarity=0.232  Sum_probs=42.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc--h-hhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK--R-DKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~--~-e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|.=..||+|.+    ++++-++.|.+||.+.|..+..  . +.+++.-+....|.+.++|+
T Consensus         3 v~iyt~~~CPyC~~----ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~   62 (80)
T COG0695           3 VTIYTKPGCPYCKR----AKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGK   62 (80)
T ss_pred             EEEEECCCCchHHH----HHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCE
Confidence            55777666999954    5555567799999999999984  3 34445447888999999885

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=80.35  E-value=8.5  Score=39.46  Aligned_cols=123  Identities=11%  Similarity=0.083  Sum_probs=76.0

Q ss_pred             eeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCe-EEEEEecccCCCCCChhhHHHHHHHHcCCC
Q 008311          338 RVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHY-EVVWIPIVDHFIHWDDPTQKKFETLQSSMP  414 (570)
Q Consensus       338 ~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~f-EIV~IsIvD~s~~w~D~~~~~F~~~~~~MP  414 (570)
                      ...+...+|+|++|-+-..+|..|..-.  |..+-.++..      +++ +|-|+-|..    .....+..+..+....|
T Consensus        18 ~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~------~g~~~I~f~vVN~----~~~~s~~~~~~l~~r~~   87 (238)
T PF04592_consen   18 QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLEN------EGLSNISFMVVNH----QGEHSRLKYWELKRRVS   87 (238)
T ss_pred             chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHH------CCCCceEEEEEcC----CCcchhHHHHHHHHhCC
Confidence            5677889999999999999999999977  9999999963      233 555554422    23445555555554433


Q ss_pred             ceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHH
Q 008311          415 WYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREE  478 (570)
Q Consensus       415 W~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e  478 (570)
                         ..+|++........+.+.++-+ .=-.+|+|+=|+++..    +..-|..-.|||......
T Consensus        88 ---~~ipVyqq~~~q~dvW~~L~G~-kdD~~iyDRCGrL~~~----i~~P~S~l~~~~ve~Ai~  143 (238)
T PF04592_consen   88 ---EHIPVYQQDENQPDVWELLNGS-KDDFLIYDRCGRLTYH----IPLPYSFLQFPYVEAAIK  143 (238)
T ss_pred             ---CCCceecCCccccCHHHHhCCC-cCcEEEEeccCcEEEE----ecCcHHHhcCHHHHHHHH
Confidence               1234332222233455555433 3457899999999864    223344455666544433

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=80.20  E-value=3.2  Score=34.15  Aligned_cols=55  Identities=22%  Similarity=0.208  Sum_probs=41.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhccccccccccccC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKSLVTS  567 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~~  567 (570)
                      +=||+...|++|++-.-.|    ++.|+++|.+-|+++. ..+.+++....-..|.|+.+
T Consensus         2 ~~Ly~~~~sp~~~kv~~~L----~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~   57 (77)
T cd03041           2 LELYEFEGSPFCRLVREVL----TELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDP   57 (77)
T ss_pred             ceEecCCCCchHHHHHHHH----HHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeC
Confidence            3489999999997544444    5569999999998654 34667777777788888763

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	570
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 4e-11
 Identities = 63/517 (12%), Positives = 142/517 (27%), Gaps = 151/517 (29%)

Query: 9   DSQQLIRRDRSMVSISDDNMMMRQIQAT-------HAPDGREVDVKPLFNLVEDILNRAT 61
             +     +     + D   M + I +         + D        LF  +        
Sbjct: 24  VFEDAFVDNFDCKDVQD---MPKSILSKEEIDHIIMSKD-AVSGTLRLFWTLLSKQEEMV 79

Query: 62  --FQTDIDETDAQ---AHLEIEDNAQQAGFLAMIDAIS-----------FTIDRISCEIA 105
             F  ++   + +   + ++ E           I+              + + R+   + 
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 106 CKALGGSDAHATTLSLFSMLSNYSWDAKLVLALAAF-------ALYYGEFWLLAQIYSSN 158
            +        A  + +  +L +     K  +AL           + +  FWL     +  
Sbjct: 140 LRQALLELRPAKNVLIDGVLGS----GKTWVALDVCLSYKVQCKMDFKIFWL-----NLK 190

Query: 159 QLAKSMAILKQLPSIMEHTSGPLKSRFDTLNNLIKAMMGVTRCIVEFKDMPSNYITQDAP 218
                  +L+ L  ++        SR D  +N+          I   +      +     
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-------IHSIQAELRRLLKS--K 241

Query: 219 EFSSA---MAHIPIAVYWTIRSVVA----CATQITT----------------LTGMGHEF 255
            + +    + ++        ++  A    C   +TT                ++   H  
Sbjct: 242 PYENCLLVLLNV-----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 256 VISTSEAWEL---------STLAHKLKNIH--------------------------ESLK 280
            ++  E   L           L  ++   +                          + L 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 281 KLMATCYRHIEEKKSHEAYQMLVKLF-DSIHIDNMKVLKALIYA--KDDLQPLVDGSTKR 337
            ++ +    +E  +  + +  L  +F  S HI    +L  + +   K D+  +V+   K 
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 338 RVNIEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIH 397
                ++ ++     IS   I    L +  ++ NE  LH  R           IVDH+  
Sbjct: 415 S----LVEKQPKESTISIPSIY---LELKVKLENEYALH--RS----------IVDHY-- 453

Query: 398 WDDPTQKKFETLQSSMP-------WYTVYHPTLIDRA 427
                 K F++     P        +  +H   I+  
Sbjct: 454 ---NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 35/250 (14%), Positives = 67/250 (26%), Gaps = 91/250 (36%)

Query: 341 IEVLRRKNVLLLISDLD---ISQEELSIL-----EQIYNESRLHLTRQESHYEVVWI--- 389
           + V         + + D   +     SIL     + I                + W    
Sbjct: 22  LSVFEDA----FVDNFDCKDVQDMPKSILSKEEIDHIIMSK----DAVSGTLRLFWTLLS 73

Query: 390 ---PIVDHFIHWDDPTQKKFETLQSSMPWYTVYH-PTLIDRAVIRYVKDVWHFKNKPILV 445
               +V  F+  ++  +  ++ L S  P  T    P+++ R  I     +++        
Sbjct: 74  KQEEMVQKFV--EEVLRINYKFLMS--PIKTEQRQPSMMTRMYIEQRDRLYN-------- 121

Query: 446 VLDPQGRVVSPNALHMMWIWGSNAFPFTSL---REEALWKEETWRLELLVDGIDPLVLDW 502
             D Q                     F      R +   K     LEL            
Sbjct: 122 --DNQ--------------------VFAKYNVSRLQPYLKLRQALLEL------------ 147

Query: 503 IKEGKYIFLYG----GDDVEWVRKFTTAARSVANTARIPLEM---VY---VGKSTKRDKC 552
            +  K + + G    G       K T  A  V  + ++  +M   ++   +      +  
Sbjct: 148 -RPAKNVLIDGVLGSG-------K-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 553 GESWQPLQLK 562
            E  Q L  +
Sbjct: 199 LEMLQKLLYQ 208

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	570
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.86
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.85
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.84
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.84
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.8
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.77
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.76
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.75
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.74
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.73
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.73
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.71
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.71
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.54
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.7
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.69
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.68
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.68
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.68
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.67
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.67
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.67
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.66
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.66
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.65
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.65
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.65
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.65
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.64
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.64
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.64
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.63
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.63
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.63
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.63
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.63
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.63
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.62
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.62
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.61
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.61
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.61
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.61
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.61
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.61
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.6
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.6
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.6
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.6
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.6
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.6
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.59
3me7_A	170	Putative uncharacterized protein; electron transfe	99.59
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.59
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.59
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.59
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.59
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.59
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.59
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.37
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.59
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.59
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.59
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.59
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.59
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.58
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.58
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.58
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.58
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.58
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.58
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.57
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.57
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.57
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.56
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.56
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.56
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.56
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.55
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.54
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.54
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.54
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.53
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.53
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.53
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.52
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.52
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.52
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.52
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.5
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.5
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.49
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.48
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.48
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.47
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.45
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.45
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.45
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.42
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.34
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.27
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.26
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.26
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.26
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.26
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.25
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.25
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.23
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.21
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.2
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.13
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.06
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.03
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.01
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.0
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	98.99
2kuc_A	130	Putative disulphide-isomerase; structural genomics	98.99
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.99
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	98.98
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.97
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	98.97
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	98.95
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	98.93
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.93
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	98.92
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	98.92
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	98.91
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.91
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	98.9
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	98.9
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.9
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.89
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.41
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	98.89
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	98.89
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	98.88
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.87
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	98.87
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	98.87
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	98.87
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	98.87
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.87
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	98.87
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	98.87
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.87
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	98.86
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	98.86
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	98.85
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.85
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	98.84
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.84
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.83
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	98.82
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	98.82
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	98.82
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	98.82
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	98.81
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.81
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.81
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.81
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	98.81
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.81
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.8
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	98.8
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	98.8
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.79
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	98.78
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	98.77
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.77
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	98.76
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.76
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.76
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.76
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.75
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	98.75
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.74
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.74
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	98.73
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	98.72
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.72
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.71
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.71
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	98.71
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	98.71
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	98.7
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.68
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.66
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.64
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	98.64
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	98.63
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	98.63
2qsi_A	137	Putative hydrogenase expression/formation protein;	98.6
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.57
1mek_A	120	Protein disulfide isomerase; electron transport, r	98.54
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.51
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.51
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.48
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.48
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.48
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.47
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.45
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.42
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	98.42
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.4
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	98.39
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	97.75
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.37
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	98.35
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	98.34
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.34
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.3
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.29
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.25
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	98.25
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	98.22
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	98.2
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	98.16
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.15
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.15
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.12
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	98.06
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.06
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.05
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.03
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.0
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	97.96
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	97.91
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.88
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.61
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.53
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	97.53
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	97.52
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.49
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	97.48
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	97.37
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	97.36
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	97.35
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.35
1ttz_A	87	Conserved hypothetical protein; structural genomic	97.24
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	97.23
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	97.21
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	97.19
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	97.18
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	97.16
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	97.16
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.14
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	97.11
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	97.11
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	97.09
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	97.09
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	97.07
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.06
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	97.05
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	97.03
2l57_A	126	Uncharacterized protein; structural genomics, unkn	97.02
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	97.01
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	96.99
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.99
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	96.99
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	96.98
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	96.98
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	96.97
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	96.96
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	96.95
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	96.95
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	96.95
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	96.95
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	96.95
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	96.94
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	96.93
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	96.92
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	96.9
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	96.89
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	96.87
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	96.86
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	96.84
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	96.83
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	96.8
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	96.76
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	96.76
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	96.75
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	96.74
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	96.74
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	96.74
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	96.73
2lrt_A	152	Uncharacterized protein; structural genomics, thio	96.71
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	96.71
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	96.69
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	96.68
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	96.67
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	96.67
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	96.66
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	96.66
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	96.65
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	96.65
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	96.63
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	96.62
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	96.62
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	96.6
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	96.59
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	96.59
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	96.58
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	96.55
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	96.53
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	96.52
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	96.51
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	96.51
4evm_A	138	Thioredoxin family protein; structural genomics, n	96.5
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	96.5
3raz_A	151	Thioredoxin-related protein; structural genomics,	96.48
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	96.48
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	96.48
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	96.46
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	95.45
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	96.41
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	96.39
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	96.36
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	96.36
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	96.36
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	96.32
1kte_A	105	Thioltransferase; redox-active center, electron tr	96.3
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	96.29
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	96.28
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	96.27
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	96.27
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	96.26
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	96.25
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	96.23
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	96.23
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	96.2
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	96.19
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	96.18
2kuc_A	130	Putative disulphide-isomerase; structural genomics	96.17
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	95.16
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	96.15
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	96.14
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	96.14
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	96.14
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	96.13
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	96.09
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	96.06
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	96.06
1mek_A	120	Protein disulfide isomerase; electron transport, r	96.04
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	95.99
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	95.99
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	95.95
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	95.93
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	95.89
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	95.89
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	95.88
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	95.86
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	95.86
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	95.85
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	95.82
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	95.76
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	95.75
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	95.74
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	95.74
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	95.73
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	95.73
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	94.71
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	95.72
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	95.7
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	95.7
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	95.69
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	95.6
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	95.55
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	95.55
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	95.54
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	95.53
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	95.49
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	95.49
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	95.47
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	95.44
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	94.41
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	95.32
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	95.31
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	95.3
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	95.26
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	95.23
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	95.23
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	95.21
2qsi_A	137	Putative hydrogenase expression/formation protein;	95.21
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	95.2
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	95.16
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	95.12
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	95.1
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	95.08
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	95.03
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	95.03
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	95.0
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	95.0
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	94.97
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	94.92
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	94.88
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	94.87
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	94.87
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	94.86
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	94.82
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	94.8
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	94.67
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	94.51
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	94.46
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	94.41
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	94.35
3ira_A	173	Conserved protein; methanosarcina mazei,structural	94.27
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	94.12
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	94.11
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	94.11
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	94.11
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	94.03
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	94.02
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	93.88
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	93.84
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	93.8
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	93.79
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	93.67
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	93.56
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	93.45
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	93.41
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	93.41
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	93.19
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	93.15
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	93.09
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	93.05
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	93.05
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	92.97
3me7_A	170	Putative uncharacterized protein; electron transfe	92.93
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	92.85
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	92.73
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	92.72
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	92.7
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	92.7
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	92.63
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	92.61
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	92.57
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	92.57
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	92.48
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	92.45
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	92.3
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	92.24
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	92.16
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	92.16
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	92.1
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	92.07
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	91.98
1kte_A	105	Thioltransferase; redox-active center, electron tr	91.98
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	91.93
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	91.9
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	91.89
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	91.77
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	91.61
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	91.47
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	91.46
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	91.45
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	91.42
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	91.41
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	91.41
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	91.32
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	91.11
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	91.08
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	90.93
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	90.87
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	90.8
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	90.63
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	90.6
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	90.58
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	90.34
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	90.04
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	90.03
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	89.7
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	89.42
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	89.4
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	89.19
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	89.07
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	89.06
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	88.91
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	88.71
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	88.39
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	88.34
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	88.04
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	87.87
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	87.82
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	87.06
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	86.73
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	86.71
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	86.69
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	85.93
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	85.76
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	85.21
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	85.19
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	84.93
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	84.56
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	84.29
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	83.89
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	83.84
4hoj_A	210	REGF protein; GST, glutathione S-transferase, enzy	82.86
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	82.7
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	80.83
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	80.8

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.86  E-value=3.8e-21  Score=178.59  Aligned_cols=128  Identities=17%  Similarity=0.346  Sum_probs=108.9

Q ss_pred             cccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          330 LVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       330 l~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      .+.+.+| .+++++++||+|+|+|||+||+||+.++  |.++|+++++     ..+++||+|++        |.+.+.++
T Consensus        33 ~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~-----~~~v~vv~v~~--------d~~~~~~~   98 (165)
T 3s9f_A           33 KLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHD-----SKNFEIILASW--------DEEEDDFN   98 (165)
T ss_dssp             CEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEEC--------CCSHHHHH
T ss_pred             eeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhcc-----CCCeEEEEEec--------CCCHHHHH
Confidence            4567788 9999999999999999999999999999  9999999963     24799999996        34556778


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCC-CcEEccccchhHhhhc-CCCCCCCc
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQ-GRVVSPNALHMMWIWG-SNAFPFTS  474 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpq-GkVv~~na~~~I~~~G-~~aFPFt~  474 (570)
                      ++..+++|..+++.   .......+.+.|++.++|+++|+|++ |+|+.++++..+.... .+.|||..
T Consensus        99 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~~~d~~~~~fpw~~  164 (165)
T 3s9f_A           99 AYYAKMPWLSIPFA---NRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWRD  164 (165)
T ss_dssp             HHHTTCSSEECCTT---CHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCCC
T ss_pred             HHHHhCCCcccccC---chhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHHhhCcccccCCCCC
Confidence            88889999888774   22334688999999999999999998 9999999999998755 67899974

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.85  E-value=7.1e-21  Score=170.40  Aligned_cols=129  Identities=19%  Similarity=0.324  Sum_probs=109.7

Q ss_pred             cccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          330 LVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       330 l~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      .+.+.+|+.+++++++||+|+|+|||+||++|+.++  |.++|+++++     ..+++||+|++        |.+.+.++
T Consensus        12 ~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~-----~~~~~vv~v~~--------d~~~~~~~   78 (144)
T 1i5g_A           12 NVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAE-----KKNFEVMLISW--------DESAEDFK   78 (144)
T ss_dssp             EEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEEC--------CSSHHHHH
T ss_pred             EEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc-----CCCEEEEEEeC--------CCCHHHHH
Confidence            466789999999999999999999999999999999  9999999962     24799999996        33456677


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEEC-CCCcEEccccchhHhhhc-CCCCCCCc
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLD-PQGRVVSPNALHMMWIWG-SNAFPFTS  474 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLD-pqGkVv~~na~~~I~~~G-~~aFPFt~  474 (570)
                      ++..+++|..+++.  . .+....+.+.|++.++|+++++| ++|+++..++...+...+ ...|||++
T Consensus        79 ~~~~~~~~~~~~~~--~-~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~~  144 (144)
T 1i5g_A           79 DYYAKMPWLALPFE--D-RKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWPN  144 (144)
T ss_dssp             HHHTTCSSEECCTT--C-HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCCC
T ss_pred             HHHHhCCccccccC--c-hHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhhCcccccCCCCC
Confidence            88888999887763  2 12346789999999999999999 999999999999998877 47799964

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.84  E-value=1.8e-20  Score=168.51  Aligned_cols=129  Identities=19%  Similarity=0.304  Sum_probs=109.1

Q ss_pred             cccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          330 LVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       330 l~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      .+.+.+| .+++++++||+|+|+|||+||++|+.++  |.++|+++++     +.+++|++|++        |.+.+.++
T Consensus        13 ~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~-----~~~~~vv~v~~--------d~~~~~~~   78 (146)
T 1o8x_A           13 KLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHE-----SKNFEVVFCTW--------DEEEDGFA   78 (146)
T ss_dssp             EEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEEC--------CCSHHHHH
T ss_pred             EEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhh-----cCCeEEEEEeC--------CCCHHHHH
Confidence            4667899 9999999999999999999999999999  9999999962     24799999996        33456778


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEEC-CCCcEEccccchhHhhhc-CCCCCCCch
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLD-PQGRVVSPNALHMMWIWG-SNAFPFTSL  475 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLD-pqGkVv~~na~~~I~~~G-~~aFPFt~~  475 (570)
                      ++..+++|..+++.   ..+....+.+.|++.++|+++++| ++|+++.+++...+.+.+ ...|||++.
T Consensus        79 ~~~~~~~~~~~~~~---~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~~~  145 (146)
T 1o8x_A           79 GYFAKMPWLAVPFA---QSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKDA  145 (146)
T ss_dssp             HHHTTCSSEECCGG---GHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCCC
T ss_pred             HHHHHCCceeeccc---hhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHHhhCCccccCCCCCC
Confidence            88888999887763   212346789999999999999999 999999999999888766 578999864

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.84  E-value=2.6e-20  Score=166.11  Aligned_cols=128  Identities=19%  Similarity=0.326  Sum_probs=108.4

Q ss_pred             cccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          330 LVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       330 l~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      .+.+.+| .+++++++||+|+|+|||+||++|+.++  |.++|+++++     ..+++|++|++        |.+.+.++
T Consensus        13 ~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~-----~~~~~vv~i~~--------d~~~~~~~   78 (144)
T 1o73_A           13 NLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHV-----AKNFEVVLISW--------DENESDFH   78 (144)
T ss_dssp             CBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEEC--------CSSHHHHH
T ss_pred             EeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhcc-----CCCEEEEEEeC--------CCCHHHHH
Confidence            4667899 9999999999999999999999999999  9999999962     24799999996        33456777


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEEC-CCCcEEccccchhHhhhc-CCCCCCCc
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLD-PQGRVVSPNALHMMWIWG-SNAFPFTS  474 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLD-pqGkVv~~na~~~I~~~G-~~aFPFt~  474 (570)
                      ++..+++|..+++.   .......+.+.|++.++|+++++| ++|+++...+...+...+ ...|||.+
T Consensus        79 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~W~~  144 (144)
T 1o73_A           79 DYYGKMPWLALPFD---QRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWPN  144 (144)
T ss_dssp             HHHTTCSSEECCTT---CHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCCC
T ss_pred             HHHHhCCceEeecc---chhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHHhhCCCccCCCCCC
Confidence            88888999888763   222346788999999999999999 899999999999998866 47799963

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.80  E-value=2.3e-19  Score=160.52  Aligned_cols=115  Identities=16%  Similarity=0.159  Sum_probs=91.4

Q ss_pred             CCCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHH---HHHHHhhhhhccCCCeEEEEEecccCCCCCChh
Q 008311          327 LQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQ---IYNESRLHLTRQESHYEVVWIPIVDHFIHWDDP  401 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~---iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~  401 (570)
                      +...+.+.+|+.+++++++||+|+|+|||+||+||+.++  |.+   +|+++++      .+++||+|+.        |.
T Consensus        12 p~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~------~~~~vi~i~~--------d~   77 (142)
T 3eur_A           12 LNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAA------KKLKVLSIYP--------DE   77 (142)
T ss_dssp             CCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHT------TSEEEEEEEC--------SS
T ss_pred             CCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhcc------CCeEEEEEEc--------CC
Confidence            344466789999999999999999999999999999999  999   9999963      4799999996        33


Q ss_pred             hHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcccc
Q 008311          402 TQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNA  458 (570)
Q Consensus       402 ~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na  458 (570)
                      +.+.+.++..+++.   +||.+.|......+.+.|++.++|+++++|++|+|+.++.
T Consensus        78 ~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  131 (142)
T 3eur_A           78 ELDEWKKHRNDFAK---EWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDA  131 (142)
T ss_dssp             CHHHHHHHGGGSCT---TSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEEE
T ss_pred             CHHHHHHHHHhccc---ccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecCC
Confidence            44566666555442   3333446544455789999999999999999999998653

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.77  E-value=1.7e-18  Score=153.85  Aligned_cols=112  Identities=15%  Similarity=0.125  Sum_probs=87.1

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHH---HHHHHhhhhhccCCCeEEEEEecccCCCCCChhh
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQ---IYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPT  402 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~---iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~  402 (570)
                      ...+.+.+|+.+++++++||+|+|+|||+||+||+.++  |.+   +++++++      .+++||+|++        |.+
T Consensus         9 ~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~------~~~~~v~v~~--------d~~   74 (142)
T 3ewl_A            9 DFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVEN------GTLRVLAIYP--------DEN   74 (142)
T ss_dssp             CCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHH------TSEEEEEEEC--------SSC
T ss_pred             CCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhcc------CCeEEEEEEe--------cCC
Confidence            34466789999999999999999999999999999998  777   9999963      3699999996        333


Q ss_pred             HHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          403 QKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       403 ~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .+.++++..+.++   +||.+.|..+.....+.|++.++|+++++|++|+++..
T Consensus        75 ~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  125 (142)
T 3ewl_A           75 REEWATKAVYMPQ---GWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILK  125 (142)
T ss_dssp             HHHHHHHHTTSCT---TCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEEC
T ss_pred             HHHHHHHHHHcCC---CcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEec
Confidence            4455555554442   45555675433222458999999999999999999873

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.76  E-value=1.4e-18  Score=155.46  Aligned_cols=108  Identities=7%  Similarity=0.032  Sum_probs=79.8

Q ss_pred             CCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHH
Q 008311          333 GSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQ  410 (570)
Q Consensus       333 g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~  410 (570)
                      +.+|+.+++++++||+|+|+|||+||+||+.++  |.++|+++++      ++++||+|++ |.    ..+..++|.+ .
T Consensus        19 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~------~~~~vv~vs~-d~----~~~~~~~~~~-~   86 (143)
T 4fo5_A           19 LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGP------DKIAMCSISM-DE----KESIFTETVK-I   86 (143)
T ss_dssp             -----CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCT------TTEEEEEEEC-CS----CHHHHHHHHH-H
T ss_pred             cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCc------CCEEEEEEEc-cC----CHHHHHHHHH-H
Confidence            678999999999999999999999999999999  9999999862      4799999996 21    1222333332 2


Q ss_pred             cCCCc-eeeccccccChH-HHHHHHHhCCCCCCceEEEECCCCcEEccc
Q 008311          411 SSMPW-YTVYHPTLIDRA-VIRYVKDVWHFKNKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       411 ~~MPW-~aV~fP~l~D~~-~~~~L~~~y~V~~IPtlVVLDpqGkVv~~n  457 (570)
                      ..++| ..+.     |.. ....+.+.|++.++|++++||++|+|+.++
T Consensus        87 ~~~~~~~~~~-----d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (143)
T 4fo5_A           87 DKLDLSTQFH-----EGLGKESELYKKYDLRKGFKNFLINDEGVIIAAN  130 (143)
T ss_dssp             HTCCGGGEEE-----CTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEES
T ss_pred             hCCCCceeee-----cccccchHHHHHcCCCCCCcEEEECCCCEEEEcc
Confidence            45677 3333     321 134688999999999999999999999864

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.75  E-value=4.4e-18  Score=155.16  Aligned_cols=110  Identities=15%  Similarity=0.263  Sum_probs=88.5

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ...+.+.+|+.+++++++||+|+|+|||+||++|+.++  |.++|+++++      .+++||+|++        |...+.
T Consensus        17 ~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~------~~~~vv~i~~--------d~~~~~   82 (152)
T 2lrt_A           17 DIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYAS------QGFEIYQISL--------DGDEHF   82 (152)
T ss_dssp             CCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG------GTEEEEEEEC--------SCCHHH
T ss_pred             CeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhcc------CCeEEEEEEc--------cCCHHH
Confidence            34456789999999999999999999999999999999  9999999973      3699999996        223345


Q ss_pred             HHHHHcCCCceeeccccccChHH-HHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          406 FETLQSSMPWYTVYHPTLIDRAV-IRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~~~-~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      ++++..++||..+.     |..+ ...+.+.|++.++|+++|||++|+|+..
T Consensus        83 ~~~~~~~~~~~~~~-----d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  129 (152)
T 2lrt_A           83 WKTSADNLPWVCVR-----DANGAYSSYISLYNVTNLPSVFLVNRNNELSAR  129 (152)
T ss_dssp             HHHHHTTCSSEEEE-----CSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEE
T ss_pred             HHHHHhCCCceEEE-----CCCCcchHHHHHcCcccCceEEEECCCCeEEEe
Confidence            56666667775544     4322 2247889999999999999999999875

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.74  E-value=1.6e-17  Score=162.90  Aligned_cols=195  Identities=9%  Similarity=0.072  Sum_probs=138.2

Q ss_pred             ccCC-CCC--eeeccc-cCCCEEEEEEe-cCCCHHhH-HHH--HHHHHHHHhhhhhccCCCe-EEEEEecccCCCCCChh
Q 008311          331 VDGS-TKR--RVNIEV-LRRKNVLLLIS-DLDISQEE-LSI--LEQIYNESRLHLTRQESHY-EVVWIPIVDHFIHWDDP  401 (570)
Q Consensus       331 ~~g~-~G~--~Vsls~-LkGKvVlL~Fw-AsWCpPCr-~e~--L~~iY~elk~~~~k~~~~f-EIV~IsIvD~s~~w~D~  401 (570)
                      +.+. +|+  .+++++ ++||+|+|+|| |+|||+|+ .++  |.++|+++++      .++ +||+||. |     +..
T Consensus        14 l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~------~~~~~vv~is~-d-----~~~   81 (241)
T 1nm3_A           14 FRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKK------YGVDDILVVSV-N-----DTF   81 (241)
T ss_dssp             EEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHH------TTCCEEEEEES-S-----CHH
T ss_pred             EEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH------CCCCEEEEEEc-C-----CHH
Confidence            4443 566  899999 99999999999 99999999 899  9999999973      479 9999996 3     233


Q ss_pred             hHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCC-----------CCceEEEECCCCcEEccccchhHhhhcCCCC
Q 008311          402 TQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-----------NKPILVVLDPQGRVVSPNALHMMWIWGSNAF  470 (570)
Q Consensus       402 ~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-----------~IPtlVVLDpqGkVv~~na~~~I~~~G~~aF  470 (570)
                      ..+.|.+- ...+    .||.+.|.  ...+.+.||+.           .+|+++|| ++|+|+....-.     ...+=
T Consensus        82 ~~~~~~~~-~~~~----~~~~l~D~--~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~-----~~~~~  148 (241)
T 1nm3_A           82 VMNAWKED-EKSE----NISFIPDG--NGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEP-----NEPGD  148 (241)
T ss_dssp             HHHHHHHH-TTCT----TSEEEECT--TSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECC-----SCSSC
T ss_pred             HHHHHHHh-cCCC----ceEEEECC--CcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEec-----cCCCc
Confidence            44555442 1222    15555675  34688889985           35999999 999998753211     11112


Q ss_pred             CCCchhHHHHhhhcCccccccccCCCccccccccCCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchh
Q 008311          471 PFTSLREEALWKEETWRLELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRD  550 (570)
Q Consensus       471 PFt~~~~e~L~~e~~w~~~ll~d~~d~~i~~~~~egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e  550 (570)
                      |+.....+++++.       +.    +.    ......|-+|....|+.|++-...|    ++.++++|.+-|..+...+
T Consensus       149 ~~~~~~~~~il~~-------l~----~~----~i~~~~i~ly~~~~Cp~C~~a~~~L----~~~~i~~~~~~i~~~~~~~  209 (241)
T 1nm3_A          149 PFKVSDADTMLKY-------LA----PQ----HQVQESISIFTKPGCPFCAKAKQLL----HDKGLSFEEIILGHDATIV  209 (241)
T ss_dssp             CCSSSSHHHHHHH-------HC----TT----SCCCCCEEEEECSSCHHHHHHHHHH----HHHTCCCEEEETTTTCCHH
T ss_pred             cceecCHHHHHHH-------hh----hh----ccccceEEEEECCCChHHHHHHHHH----HHcCCceEEEECCCchHHH
Confidence            4444556666643       11    11    1134458889888899997554444    4559999999999887768


Q ss_pred             hhhhccccccccccccCCC
Q 008311          551 KCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~  569 (570)
                      .+++..+....|.++++|+
T Consensus       210 ~l~~~~g~~~vP~~~~~g~  228 (241)
T 1nm3_A          210 SVRAVSGRTTVPQVFIGGK  228 (241)
T ss_dssp             HHHHHTCCSSSCEEEETTE
T ss_pred             HHHHHhCCCCcCEEEECCE
Confidence            8888888889999999885

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=1.5e-17  Score=150.02  Aligned_cols=115  Identities=16%  Similarity=0.236  Sum_probs=87.9

Q ss_pred             CCCcccCCCCCeeecc--ccCCCEEEEEEecCCCHH--hHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCCh
Q 008311          327 LQPLVDGSTKRRVNIE--VLRRKNVLLLISDLDISQ--EELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDD  400 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls--~LkGKvVlL~FwAsWCpP--Cr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D  400 (570)
                      +...+.+.+|+.++++  +++||+|+|+|||+||+|  |+.++  |.++|++++.     +++++||+|++ |.    ..
T Consensus        12 p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~-----~~~~~~v~v~~-d~----~~   81 (150)
T 3fw2_A           12 PFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKK-----NKYIGMLGISL-DV----DK   81 (150)
T ss_dssp             CCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTT-----CSSEEEEEEEC-CS----CH
T ss_pred             CccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhcc-----CCCeEEEEEEc-CC----CH
Confidence            3445678899999999  999999999999999999  99999  9999999931     34799999996 21    12


Q ss_pred             hhHHHHHHHHcCCCceeeccccccChH-HHHHHHHhCCCCCCceEEEECCCCcEEccc
Q 008311          401 PTQKKFETLQSSMPWYTVYHPTLIDRA-VIRYVKDVWHFKNKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       401 ~~~~~F~~~~~~MPW~aV~fP~l~D~~-~~~~L~~~y~V~~IPtlVVLDpqGkVv~~n  457 (570)
                      +..+.|.+ ...++|..+.     |.. ....+.+.|++.++|+++++|++|+++...
T Consensus        82 ~~~~~~~~-~~~~~~~~~~-----d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  133 (150)
T 3fw2_A           82 QQWKDAIK-RDTLDWEQVC-----DFGGLNSEVAKQYSIYKIPANILLSSDGKILAKN  133 (150)
T ss_dssp             HHHHHHHH-HTTCCSEEEC-----CSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred             HHHHHHHH-HhCCCceEEE-----cCcccchHHHHHcCCCccCeEEEECCCCEEEEcc
Confidence            23333332 2355665443     431 134688999999999999999999999875

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.73  E-value=1.6e-17  Score=150.08  Aligned_cols=113  Identities=17%  Similarity=0.198  Sum_probs=87.1

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ...+.+.+|+.+++++++||+|+|+|||+||++|+.++  |.++++++++      .+++|++|++ |.    +.+..+.
T Consensus        11 ~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~------~~~~vv~v~~-d~----~~~~~~~   79 (152)
T 2lrn_A           11 AITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKD------KGFTIYGVST-DR----REEDWKK   79 (152)
T ss_dssp             CCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTT------TTEEEEEEEC-CS----CHHHHHH
T ss_pred             CceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcc------CCeEEEEEEc-cC----CHHHHHH
Confidence            34456789999999999999999999999999999999  9999999962      4699999996 21    1223333


Q ss_pred             HHHHHcCCCceeeccccccChHH-HHHHHHhCCCCCCceEEEECCCCcEEccc
Q 008311          406 FETLQSSMPWYTVYHPTLIDRAV-IRYVKDVWHFKNKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~~~-~~~L~~~y~V~~IPtlVVLDpqGkVv~~n  457 (570)
                      |.+ ...++|..+.     |... ...+.+.|++.++|+++++|++|+++...
T Consensus        80 ~~~-~~~~~~~~~~-----d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  126 (152)
T 2lrn_A           80 AIE-EDKSYWNQVL-----LQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKE  126 (152)
T ss_dssp             HHH-HHTCCSEEEE-----ECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEEC
T ss_pred             HHH-HhCCCCeEEe-----cccchhHHHHHHhCCCcCCeEEEECCCCeEEEee
Confidence            332 2355665443     4321 46788999999999999999999999764

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.71  E-value=8.3e-18  Score=152.09  Aligned_cols=111  Identities=13%  Similarity=0.178  Sum_probs=81.3

Q ss_pred             CCCeeeccccCCCEEEEEEecCCCHHhHHH-H--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHc
Q 008311          335 TKRRVNIEVLRRKNVLLLISDLDISQEELS-I--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQS  411 (570)
Q Consensus       335 ~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e-~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~  411 (570)
                      +|+.+++++++||+|+|+|||+||+||+.+ +  |.++|++++      +++++||.|++....  ..+.+.+..+++..
T Consensus        17 ~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~------~~~v~~v~v~~~~~~--~~~~~~~~~~~~~~   88 (158)
T 3eyt_A           17 SATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFP------EDKVAVLGLHTVFEH--HEAMTPISLKAFLH   88 (158)
T ss_dssp             CSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSC------TTTEEEEEEECCCSC--GGGSCHHHHHHHHH
T ss_pred             CCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhC------cCCEEEEEEEecccc--cccCCHHHHHHHHH
Confidence            689999999999999999999999999996 7  999999996      247999999962100  00122333333333


Q ss_pred             CCCceeeccccccChHHHH---HHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          412 SMPWYTVYHPTLIDRAVIR---YVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       412 ~MPW~aV~fP~l~D~~~~~---~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      +.   .++||.+.|.....   .+.+.|++.++|+++|+|++|+++..
T Consensus        89 ~~---~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  133 (158)
T 3eyt_A           89 EY---RIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAH  133 (158)
T ss_dssp             HT---TCCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEE
T ss_pred             Hc---CCCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence            22   22345445543211   58899999999999999999999875

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.71  E-value=3.2e-17  Score=148.01  Aligned_cols=110  Identities=13%  Similarity=0.160  Sum_probs=84.1

Q ss_pred             CcccC-CCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDG-STKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g-~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      |.|.. .+|+.+++++++||+|+|+|||+||+||+.++  |.++|++++      +.+++||.|++ |     +.+....
T Consensus         6 ~~~~~~~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~------~~~v~vv~v~~-d-----~~~~~~~   73 (151)
T 3raz_A            6 DELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQK------KGSVDMVGIAL-D-----TSDNIGN   73 (151)
T ss_dssp             -CEEETTTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSC------TTTEEEEEEES-S-----CHHHHHH
T ss_pred             chhhcccCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhc------cCCeEEEEEEC-C-----ChHHHHH
Confidence            34433 68999999999999999999999999999999  999999985      35799999997 3     2344445


Q ss_pred             HHHHHcCCCceeeccccccCh-HHHHHHHHhCC--CCCCceEEEECCCCcEEcc
Q 008311          406 FETLQSSMPWYTVYHPTLIDR-AVIRYVKDVWH--FKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~-~~~~~L~~~y~--V~~IPtlVVLDpqGkVv~~  456 (570)
                      |.+. ..++|     |.+.|. .....+.+.|+  +.++|+++++|++|+++..
T Consensus        74 ~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  121 (151)
T 3raz_A           74 FLKQ-TPVSY-----PIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQT  121 (151)
T ss_dssp             HHHH-SCCSS-----CEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEE
T ss_pred             HHHH-cCCCC-----ceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEE
Confidence            5432 33444     333232 22457889999  9999999999999999764

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.54  E-value=7.7e-19  Score=155.68  Aligned_cols=120  Identities=15%  Similarity=0.185  Sum_probs=92.3

Q ss_pred             cccCCCCCeeeccc-cCCC-EEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          330 LVDGSTKRRVNIEV-LRRK-NVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       330 l~~g~~G~~Vsls~-LkGK-vVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      .+.+.+|+.+++++ ++|| +|+|+|||+|||+|+.++  |.++|+++++    .+.+++|++|++.+     +.+..+.
T Consensus         8 ~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~----~~~~~~v~~v~~d~-----~~~~~~~   78 (143)
T 2lus_A            8 KLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVD----DSAPFEIIFVSSDR-----SEDDMFQ   78 (143)
Confidence            35567889999999 9999 999999999999999999  9999999963    13579999999621     1122233


Q ss_pred             HHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHh
Q 008311          406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMW  463 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~  463 (570)
                      |.+ ....+|..+++.    .+....+.+.|++.++|+++++|++|+++..+++..+.
T Consensus        79 ~~~-~~~~~~~~~~~~----~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~  131 (143)
T 2lus_A           79 YMM-ESHGDWLAIPYR----SGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQ  131 (143)
Confidence            322 134577766652    22345788999999999999999999999998887665

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.70  E-value=1.6e-17  Score=150.23  Aligned_cols=112  Identities=15%  Similarity=0.168  Sum_probs=81.2

Q ss_pred             CCCCeeeccccCCCEEEEEEecCCCHHhHHH-H--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHH
Q 008311          334 STKRRVNIEVLRRKNVLLLISDLDISQEELS-I--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQ  410 (570)
Q Consensus       334 ~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e-~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~  410 (570)
                      .+|+.+++++++||+|+|+|||+||+||+.+ +  |.++|+++++      .+++||.|++....  -.+.+.+..+++.
T Consensus        18 ~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~------~~v~~v~v~~~~~~--~~~~~~~~~~~~~   89 (160)
T 3lor_A           18 VNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDE------SQVQVIGLHSVFEH--HDVMTPEALKVFI   89 (160)
T ss_dssp             SSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCT------TTEEEEEEECCCSC--GGGSCHHHHHHHH
T ss_pred             cCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCc------CCcEEEEEeccccc--cccCCHHHHHHHH
Confidence            5789999999999999999999999999996 7  9999999962      46999999962100  0012233344333


Q ss_pred             cCCCceeeccccccChHHH----HHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          411 SSMPWYTVYHPTLIDRAVI----RYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       411 ~~MPW~aV~fP~l~D~~~~----~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .+.   .++||.+.|....    ..+.+.|++.++|+++|+|++|+++..
T Consensus        90 ~~~---~~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  136 (160)
T 3lor_A           90 DEF---GIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQV  136 (160)
T ss_dssp             HHT---TCCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred             HHc---CCCCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEE
Confidence            322   2234444454221    127889999999999999999999875

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.69  E-value=4.2e-17  Score=144.63  Aligned_cols=114  Identities=13%  Similarity=0.216  Sum_probs=86.9

Q ss_pred             CCCcccCCCCCeeecc--ccCCCEEEEEEecCCCHHhHHHH--HHHHHHHH-hhhhhccCCCeEEEEEecccCCCCCChh
Q 008311          327 LQPLVDGSTKRRVNIE--VLRRKNVLLLISDLDISQEELSI--LEQIYNES-RLHLTRQESHYEVVWIPIVDHFIHWDDP  401 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls--~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~el-k~~~~k~~~~fEIV~IsIvD~s~~w~D~  401 (570)
                      +...+.+.+|+.++++  +++||+|+|+|||+||++|+.++  |.++++++ +      +.+++|+.|++ |.    ..+
T Consensus        12 p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~------~~~~~~v~v~~-d~----~~~   80 (148)
T 3fkf_A           12 PYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKK------NKNFAMLGISL-DI----DRE   80 (148)
T ss_dssp             CCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTT------CTTEEEEEEEC-CS----CHH
T ss_pred             CCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcC------CCCeEEEEEEC-CC----CHH
Confidence            3444667899999999  99999999999999999999999  99999998 4      34699999996 21    122


Q ss_pred             hHHHHHHHHcCCCceeeccccccChHH-HHHHHHhCCCCCCceEEEECCCCcEEccc
Q 008311          402 TQKKFETLQSSMPWYTVYHPTLIDRAV-IRYVKDVWHFKNKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       402 ~~~~F~~~~~~MPW~aV~fP~l~D~~~-~~~L~~~y~V~~IPtlVVLDpqGkVv~~n  457 (570)
                      ..+.|.+ ...++|..+.     |... ...+.+.|++.++|+++++|++|+++...
T Consensus        81 ~~~~~~~-~~~~~~~~~~-----d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  131 (148)
T 3fkf_A           81 AWETAIK-KDTLSWDQVC-----DFTGLSSETAKQYAILTLPTNILLSPTGKILARD  131 (148)
T ss_dssp             HHHHHHH-HTTCCSEEEC-----CSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred             HHHHHHH-HcCCCceEEE-----ccCCcchHHHHhcCCCCcCEEEEECCCCeEEEec
Confidence            2333332 2455665443     3211 34688999999999999999999999764

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.68  E-value=3e-16  Score=142.39  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=88.7

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHH-hHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQ-EELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpP-Cr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ..+.+.+|+.+++++++||+|+|+|||+||+| |+.++  |.++|+++++.  .+..+++||+|++ |...+ +.+..+.
T Consensus         6 f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~--~~~~~~~vv~vs~-d~~~d-~~~~~~~   81 (164)
T 2ggt_A            6 FSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSI--TTLPDLTPLFISI-DPERD-TKEAIAN   81 (164)
T ss_dssp             CEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHS--SSSCCEEEEEEES-CTTTC-CHHHHHH
T ss_pred             eEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhc--cCCCcEEEEEEEe-CCCCC-CHHHHHH
Confidence            44567899999999999999999999999999 99999  99999999741  1124899999997 32100 1223344


Q ss_pred             HHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCc---------------eEEEECCCCcEEcc
Q 008311          406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKP---------------ILVVLDPQGRVVSP  456 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IP---------------tlVVLDpqGkVv~~  456 (570)
                      |.+. ...+|..+.-    +.+....+.+.|++.++|               +++|||++|+++..
T Consensus        82 ~~~~-~~~~~~~l~~----~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~  142 (164)
T 2ggt_A           82 YVKE-FSPKLVGLTG----TREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY  142 (164)
T ss_dssp             HHHT-TCSSCEEEEC----CHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEE
T ss_pred             HHHH-cCCCeEEEeC----CHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEE
Confidence            4432 3456655432    233456788999999999               89999999999875

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.68  E-value=1.8e-17  Score=147.12  Aligned_cols=113  Identities=17%  Similarity=0.192  Sum_probs=85.9

Q ss_pred             CCCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          327 LQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      +...+.+.+|+.+++++++||+|+|+|||+||++|+.++  |.++++++++      .+++||.|++ |.    +.+..+
T Consensus        12 p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~------~~~~~v~v~~-d~----~~~~~~   80 (148)
T 3hcz_A           12 PNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRA------KGIQVYAANI-ER----KDEEWL   80 (148)
T ss_dssp             CCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGG------GTEEEEEEEC-CS----SSHHHH
T ss_pred             CceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhcc------CCEEEEEEEe-cC----CHHHHH
Confidence            334466789999999999999999999999999999999  9999999963      3699999997 21    222334


Q ss_pred             HHHHHHcCCC-ceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          405 KFETLQSSMP-WYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MP-W~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      +|.+. ..++ |.     .+.|......+.+.|++.++|+++++|++|+++..
T Consensus        81 ~~~~~-~~~~~~~-----~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~  127 (148)
T 3hcz_A           81 KFIRS-KKIGGWL-----NVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAK  127 (148)
T ss_dssp             HHHHH-HTCTTSE-----EEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEE
T ss_pred             HHHHH-cCCCCce-----EEeccccchhHHHhcCcCCCCEEEEECCCCcEEEe
Confidence            44332 2344 43     23354333337889999999999999999999875

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.68  E-value=1.5e-16  Score=146.03  Aligned_cols=110  Identities=14%  Similarity=0.157  Sum_probs=86.7

Q ss_pred             CCCcccCCCCCeeeccccCCCE-EEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhh
Q 008311          327 LQPLVDGSTKRRVNIEVLRRKN-VLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPT  402 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkGKv-VlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~  402 (570)
                      +...+.+.+|+.+++++++||+ |+|+|| |+|||+|+.++  |.++|+++++      .+++||+|++ |     +.+.
T Consensus         9 P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~------~~v~vv~vs~-d-----~~~~   76 (161)
T 3drn_A            9 PLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKD------YDVVVIGVSS-D-----DINS   76 (161)
T ss_dssp             CCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHT------TCEEEEEEES-C-----CHHH
T ss_pred             CCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHH------cCCEEEEEeC-C-----CHHH
Confidence            3345567899999999999998 999999 99999999999  9999999973      4699999996 3     2334


Q ss_pred             HHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCC----CceEEEECCCCcEEcc
Q 008311          403 QKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKN----KPILVVLDPQGRVVSP  456 (570)
Q Consensus       403 ~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~----IPtlVVLDpqGkVv~~  456 (570)
                      .+.|.+. ..++     ||.+.|.  ...+.+.|++.+    +|+++|||++|+|+..
T Consensus        77 ~~~~~~~-~~~~-----~~~~~d~--~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~  126 (161)
T 3drn_A           77 HKRFKEK-YKLP-----FILVSDP--DKKIRELYGAKGFILPARITFVIDKKGIIRHI  126 (161)
T ss_dssp             HHHHHHH-TTCC-----SEEEECT--TSHHHHHTTCCCSSSCCCEEEEECTTSBEEEE
T ss_pred             HHHHHHH-hCCC-----ceEEECC--cHHHHHHcCCCCcCcccceEEEECCCCEEEEE
Confidence            4444432 2334     4444563  346889999999    9999999999999865

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.67  E-value=1.7e-16  Score=142.62  Aligned_cols=109  Identities=17%  Similarity=0.300  Sum_probs=84.7

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ..+.+.+|+.+++++++||+|+|+|||+||++|+.++  |.++++++++      .+++|++|++ |.    +.+..+.|
T Consensus         9 ~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~------~~v~vv~v~~-d~----~~~~~~~~   77 (151)
T 2f9s_A            9 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS------QGVEIVAVNV-GE----SKIAVHNF   77 (151)
T ss_dssp             CEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG------GTEEEEEEEE-SC----CHHHHHHH
T ss_pred             ceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc------CCeEEEEEEC-CC----CHHHHHHH
Confidence            4456789999999999999999999999999999999  9999999963      3699999997 21    23333444


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .+. ..++     ||.+.|.  ...+.+.|++.++|+++++|++|+++..
T Consensus        78 ~~~-~~~~-----~~~~~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  119 (151)
T 2f9s_A           78 MKS-YGVN-----FPVVLDT--DRQVLDAYDVSPLPTTFLINPEGKVVKV  119 (151)
T ss_dssp             HHH-HTCC-----SCEEEET--TSHHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred             HHH-cCCC-----ceEEECC--chHHHHhcCCCCCCeEEEECCCCcEEEE
Confidence            332 2333     4444454  2467889999999999999999999864

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.67  E-value=2.7e-16  Score=140.88  Aligned_cols=108  Identities=15%  Similarity=0.166  Sum_probs=83.8

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ..+.+ +|+.+++++++||+|+|+||++||++|+.++  |.++++++++      .+++||+|++ |       .+.+..
T Consensus        12 f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~------~~~~~v~v~~-d-------~~~~~~   76 (152)
T 3gl3_A           12 FALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKA------KGFQVVAVNL-D-------AKTGDA   76 (152)
T ss_dssp             CEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGG------GTEEEEEEEC-C-------SSHHHH
T ss_pred             eEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc------CCeEEEEEEC-C-------CCHHHH
Confidence            34556 8999999999999999999999999999999  9999999963      3699999996 2       223333


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .++..+.+   ++||.+.|..  ..+.+.|++.++|+++++|++|+++..
T Consensus        77 ~~~~~~~~---~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~~G~i~~~  121 (152)
T 3gl3_A           77 MKFLAQVP---AEFTVAFDPK--GQTPRLYGVKGMPTSFLIDRNGKVLLQ  121 (152)
T ss_dssp             HHHHHHSC---CCSEEEECTT--CHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred             HHHHHHcC---CCCceeECCc--chhHHHcCCCCCCeEEEECCCCCEEEE
Confidence            33333332   2344444642  468899999999999999999999875

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.67  E-value=4.6e-16  Score=134.75  Aligned_cols=114  Identities=17%  Similarity=0.230  Sum_probs=87.5

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ..+.+.+|+.+++++++||+|+|+||++||++|+.++  |.+++++++       .++.+|.|...+.+   .+.+.+.+
T Consensus         5 f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~v~i~~~~~~---~~~~~~~~   74 (138)
T 4evm_A            5 FELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAG-------DDYVVLTVVSPGHK---GEQSEADF   74 (138)
T ss_dssp             CEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCT-------TTEEEEEEECTTST---TCCCHHHH
T ss_pred             ceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhC-------CCcEEEEEEcCCCC---chhhHHHH
Confidence            3456789999999999999999999999999999999  999988752       46888888542211   23445666


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .++..+.++.  +||.+.|.  ...+.+.|++.++|+++++|++|+++..
T Consensus        75 ~~~~~~~~~~--~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  120 (138)
T 4evm_A           75 KNWYKGLDYK--NLPVLVDP--SGKLLETYGVRSYPTQAFIDKEGKLVKT  120 (138)
T ss_dssp             HHHHTTCCCT--TCCEEECT--TCHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             HHHHhhcCCC--CeeEEECc--chHHHHHcCcccCCeEEEECCCCcEEEe
Confidence            6666655542  44444554  3468899999999999999999999865

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.66  E-value=8.2e-16  Score=140.68  Aligned_cols=120  Identities=11%  Similarity=0.047  Sum_probs=88.0

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCHH-hHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQ-EELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpP-Cr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ...+.+.+|+.+++++++||+|+|+|||+||+| |+.++  |.++++++++.+  ...+++||+|++ |...+ +.+..+
T Consensus         8 ~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~--~~~~v~vv~is~-d~~~d-~~~~~~   83 (171)
T 2rli_A            8 DFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEP--GLPPVQPVFITV-DPERD-DVEAMA   83 (171)
T ss_dssp             CCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHST--TSCCEEEEEEES-CSTTC-CHHHHH
T ss_pred             CeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhcc--CCCceEEEEEEE-CCCCC-CHHHHH
Confidence            345667899999999999999999999999999 99999  999999996311  125899999997 32100 122334


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCc---------------eEEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKP---------------ILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IP---------------tlVVLDpqGkVv~~  456 (570)
                      .|.+. ...+|..+.-    +.+....+.+.|++..+|               +++|||++|+|+..
T Consensus        84 ~~~~~-~~~~~~~l~~----~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~  145 (171)
T 2rli_A           84 RYVQD-FHPRLLGLTG----STKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY  145 (171)
T ss_dssp             HHHHT-TCTTCCEEEC----CHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEE
T ss_pred             HHHHH-cCCCeEEEeC----CHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEE
Confidence            44331 2345544432    223345788899999888               99999999999875

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.66  E-value=8.2e-17  Score=146.11  Aligned_cols=115  Identities=10%  Similarity=0.134  Sum_probs=87.6

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      |.+.+.+|+.+++++++||+|+|+|||+||++|+.++  |.+++++++.      .+++||+|++.+..   .+...+.+
T Consensus        21 p~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~------~~~~vv~v~~~~~~---~~~~~~~~   91 (164)
T 2h30_A           21 STMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKF------SSANLITVASPGFL---HEKKDGEF   91 (164)
T ss_dssp             TTCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGG------TTSEEEEEECTTST---TCCCTTHH
T ss_pred             CccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc------CCcEEEEEEcCCCc---cccCHHHH
Confidence            4677788999999999999999999999999999999  9999999863      46999999973211   12233456


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .++.....|..  +|...|.  ...+.+.|++.++|+++++|++|+++..
T Consensus        92 ~~~~~~~~~~~--~~~~~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  137 (164)
T 2h30_A           92 QKWYAGLNYPK--LPVVTDN--GGTIAQNLNISVYPSWALIGKDGDVQRI  137 (164)
T ss_dssp             HHHHTTSCCTT--SCEEECT--TCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred             HHHHHhCCCCc--ceEEEcC--chHHHHHcCCCccceEEEECCCCcEEEE
Confidence            66555444321  3333343  3468889999999999999999999864

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.65  E-value=5.5e-16  Score=139.19  Aligned_cols=111  Identities=14%  Similarity=0.178  Sum_probs=84.7

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ...+.+.+|+.+++++++||+|+|+||++||++|+.++  |.+++++++      +.+++|+.|++ |..   +.+..+.
T Consensus        10 ~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~------~~~~~~v~v~~-d~~---~~~~~~~   79 (154)
T 3kcm_A           10 DFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMA------GKPFRMLCVSI-DEG---GKVAVEE   79 (154)
T ss_dssp             CCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT------TSSEEEEEEEC-CTT---HHHHHHH
T ss_pred             CeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc------cCCeEEEEEEc-CCc---chHHHHH
Confidence            34466789999999999999999999999999999999  999999985      24799999996 210   1222333


Q ss_pred             HHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      |.+. ...+     ||.+.|.  ...+.+.|++.++|+++|||++|+++..
T Consensus        80 ~~~~-~~~~-----~~~~~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  122 (154)
T 3kcm_A           80 FFRK-TGFT-----LPVLLDA--DKRVGKLYGTTGVPETFVIDRHGVILKK  122 (154)
T ss_dssp             HHHH-HCCC-----CCEEECT--TCHHHHHHTCCSBCEEEEECTTSBEEEE
T ss_pred             HHHH-cCCC-----eeEEecC--chHHHHHhCCCCCCeEEEECCCCcEEEE
Confidence            3322 2333     4444454  3468889999999999999999999875

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.65  E-value=6.3e-16  Score=149.78  Aligned_cols=128  Identities=7%  Similarity=-0.053  Sum_probs=83.6

Q ss_pred             ccCCCCCc--ccCCC-CCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCC-C
Q 008311          323 AKDDLQPL--VDGST-KRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHF-I  396 (570)
Q Consensus       323 ~k~~~~pl--~~g~~-G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s-~  396 (570)
                      ......|.  +.+.+ |+.+++++++||+|+|+|||+|||||+.++  |.++|+++++      ++++||+|++.+.. .
T Consensus        21 ~~~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~------~g~~vv~v~~d~~~~~   94 (208)
T 2f8a_A           21 QSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGP------RGLVVLGFPCNQFGHQ   94 (208)
T ss_dssp             -CCCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTEEEEEEECCCSTTT
T ss_pred             hhcCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccC------CCeEEEEEECCccccc
Confidence            33333444  45677 999999999999999999999999999999  9999999973      36999999972100 0


Q ss_pred             C-CChhhHHHHHHHHcCCCceeeccccccCh--------HHHHHHHHhC-------------------------CCCCCc
Q 008311          397 H-WDDPTQKKFETLQSSMPWYTVYHPTLIDR--------AVIRYVKDVW-------------------------HFKNKP  442 (570)
Q Consensus       397 ~-w~D~~~~~F~~~~~~MPW~aV~fP~l~D~--------~~~~~L~~~y-------------------------~V~~IP  442 (570)
                      + -+.+..+.|.++...-.-+.++||.+.|.        +..+.+++.+                         +++..|
T Consensus        95 e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p  174 (208)
T 2f8a_A           95 ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNF  174 (208)
T ss_dssp             TCSCHHHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTT
T ss_pred             CCCCHHHHHHHHHhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCc
Confidence            0 01233445544211000134456544221        1223343333                         266779


Q ss_pred             eEEEECCCCcEEcc
Q 008311          443 ILVVLDPQGRVVSP  456 (570)
Q Consensus       443 tlVVLDpqGkVv~~  456 (570)
                      +++|||++|+|+.+
T Consensus       175 ~tflID~~G~i~~~  188 (208)
T 2f8a_A          175 EKFLVGPDGVPLRR  188 (208)
T ss_dssp             CEEEECTTSCEEEE
T ss_pred             eEEEEcCCCcEEEE
Confidence            99999999999875

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.65  E-value=7.4e-16  Score=139.62  Aligned_cols=108  Identities=13%  Similarity=0.124  Sum_probs=82.0

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ..+.+.+|+.+++++++||+|+|+||++||++|+.++  |.++++++++      .+++||.|++ |.    ..+..+.|
T Consensus        17 ~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~------~~v~~v~v~~-d~----~~~~~~~~   85 (165)
T 3or5_A           17 FSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWAS------RGFTFVGIAV-NE----QLPNVKNY   85 (165)
T ss_dssp             CEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTT------TTEEEEEEEC-SC----CHHHHHHH
T ss_pred             ceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc------CCeEEEEEEC-CC----CHHHHHHH
Confidence            4456789999999999999999999999999999999  9999999962      4699999996 21    22333444


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhC------CCCCCceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVW------HFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y------~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .+. ..++     ||.+.|..   .+.+.|      ++.++|+++++|++|+++..
T Consensus        86 ~~~-~~~~-----~~~~~~~~---~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~  132 (165)
T 3or5_A           86 MKT-QGII-----YPVMMATP---ELIRAFNGYIDGGITGIPTSFVIDASGNVSGV  132 (165)
T ss_dssp             HHH-HTCC-----SCEEECCH---HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEE
T ss_pred             HHH-cCCC-----CceEecCH---HHHHHHhhhhccCCCCCCeEEEECCCCcEEEE
Confidence            331 2344     44444542   455556      89999999999999999864

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.65  E-value=3.3e-16  Score=143.02  Aligned_cols=106  Identities=10%  Similarity=0.118  Sum_probs=85.0

Q ss_pred             ccCCCCCeeeccccCCCEEEEEEec-CCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          331 VDGSTKRRVNIEVLRRKNVLLLISD-LDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkGKvVlL~FwA-sWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      +.+.+|+.+++++++||+|+|+||+ +|||+|+.++  |.++|+++++      .+++||+|++ |     +.+..+.|.
T Consensus        20 l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~------~~~~vv~vs~-d-----~~~~~~~~~   87 (163)
T 3gkn_A           20 LSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDK------AGAKILGVSR-D-----SVKSHDNFC   87 (163)
T ss_dssp             EECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHH------TTCEEEEEES-S-----CHHHHHHHH
T ss_pred             ccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHHH
Confidence            5578999999999999999999998 9999999999  9999999973      3799999996 3     234455565


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCCCC------------CceEEEECCCCcEEcc
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKN------------KPILVVLDPQGRVVSP  456 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~------------IPtlVVLDpqGkVv~~  456 (570)
                      +. ..+     +||.+.|.  ...+.+.|++..            +|+++|||++|+|+..
T Consensus        88 ~~-~~~-----~~~~~~d~--~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~  140 (163)
T 3gkn_A           88 AK-QGF-----AFPLVSDG--DEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQA  140 (163)
T ss_dssp             HH-HCC-----SSCEEECT--TCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEE
T ss_pred             HH-hCC-----CceEEECC--cHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEE
Confidence            42 233     44555564  346888999987            9999999999999874

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.64  E-value=2.8e-16  Score=152.40  Aligned_cols=118  Identities=14%  Similarity=0.091  Sum_probs=87.4

Q ss_pred             CCcccCCCCCeeeccccCCC-EEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRK-NVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGK-vVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ...+.+.+|+.+++++++|| +|+|+|||+|||+|+.++  |.++|+++++      .+++||+|++.+.. ...+.+.+
T Consensus        40 ~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~------~~v~vv~Vs~d~~~-~~~~d~~~  112 (218)
T 3u5r_E           40 DFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAG------QGLAVVAINSNDAQ-AFPEETLE  112 (218)
T ss_dssp             CCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTT------TTEEEEEEECSCTT-TCGGGSHH
T ss_pred             CcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHh------CCcEEEEEECCccc-ccccCCHH
Confidence            34566889999999999999 599999999999999999  9999999963      46999999973210 00002233


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~n  457 (570)
                      ..+++..+.   .++||.+.|.  ...+.+.|++.++|+++|||++|+|+.+.
T Consensus       113 ~~~~~~~~~---~~~~~~l~D~--~~~~~~~~~v~~~P~~~liD~~G~i~~~g  160 (218)
T 3u5r_E          113 RVGAEVKAY---GYGFPYLKDA--SQSVAKAYGAACTPDFFLYDRERRLVYHG  160 (218)
T ss_dssp             HHHHHHHHH---TCCSCEEECT--TCHHHHHHTCCEESEEEEECTTCBEEEEE
T ss_pred             HHHHHHHHh---CCCccEEECC--ccHHHHHcCCCCCCeEEEECCCCcEEEec
Confidence            333333222   2355655564  34688999999999999999999998653

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.64  E-value=8e-17  Score=148.62  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=80.0

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ...+.+.+|+.+++++++||+|+|+|| |+|||||+.++  |.++|+++++      .+++||+||. |     +.+..+
T Consensus        12 dF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~------~~~~~v~vs~-d-----~~~~~~   79 (157)
T 4g2e_A           12 DFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQ------VNAVVLGISV-D-----PPFSNK   79 (157)
T ss_dssp             CCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGG------CSSEEEEEES-S-----CHHHHH
T ss_pred             CeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccc------cCceEeeecc-c-----chhHHH
Confidence            344568899999999999999999999 99999999999  9999999863      5799999996 3     344555


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHHHhCCCC-----------CCceEEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-----------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-----------~IPtlVVLDpqGkVv~~  456 (570)
                      +|.+- ..++     ||.+.|..  ..+.+.||+.           ..|+++|||++|+|+..
T Consensus        80 ~~~~~-~~~~-----~p~l~D~~--~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~  134 (157)
T 4g2e_A           80 AFKEH-NKLN-----FTILSDYN--REVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYK  134 (157)
T ss_dssp             HHHHH-TTCC-----SEEEECTT--SHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEE
T ss_pred             HHHHH-cCCc-----EEEEEcCC--cHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEE
Confidence            66542 3344     55555653  4688889873           46889999999999865

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.64  E-value=5.4e-17  Score=153.25  Aligned_cols=121  Identities=12%  Similarity=0.153  Sum_probs=82.4

Q ss_pred             CCCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          327 LQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      +...+.+.+|+.+++++++||+|+|+|||+|||||+.++  |.++|+++++      ++++||+|++.+.. .-...+.+
T Consensus        27 p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~------~~~~vi~is~d~~~-~~e~~~~~   99 (187)
T 3dwv_A           27 FDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKS------QGFTVLAFPSNQFG-GQEPGNEE   99 (187)
T ss_dssp             GGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGG------GTCEEEEEEBCCCS-SCSSSBTT
T ss_pred             CCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhh------CCeEEEEEECcccC-CCCCCCHH
Confidence            344566789999999999999999999999999999999  9999999973      36999999972100 00011233


Q ss_pred             HHHHHHcCCCceeecccccc--ChH------HHHHHH----HhCCCCCCc---eEEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYHPTLI--DRA------VIRYVK----DVWHFKNKP---ILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~--D~~------~~~~L~----~~y~V~~IP---tlVVLDpqGkVv~~  456 (570)
                      ..+++..+  -+.++||.+.  |..      ..+.+.    ..|++..+|   +++|||++|+|+..
T Consensus       100 ~~~~~~~~--~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~  164 (187)
T 3dwv_A          100 EIKEFVCT--KFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVER  164 (187)
T ss_dssp             HHHHSCCB--CCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHHHh--ccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEE
Confidence            44444331  1223444432  111      112222    445777888   99999999999876

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.63  E-value=8.2e-16  Score=135.53  Aligned_cols=110  Identities=13%  Similarity=0.240  Sum_probs=84.3

Q ss_pred             cccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          330 LVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       330 l~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      .+.+.+|+.+++++ +||+|+|+||++||++|+.++  |.+++++++      +.+++||.|++.+     .+.+.+.++
T Consensus        19 ~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~------~~~~~~v~v~~d~-----~~~~~~~~~   86 (145)
T 3erw_A           19 LMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHP------SDSVKLVTVNLVN-----SEQNQQVVE   86 (145)
T ss_dssp             EEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCC------CSSEEEEEEECGG-----GSSCHHHHH
T ss_pred             eeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcC------CCCEEEEEEEccC-----CcCCHHHHH
Confidence            45678999999999 999999999999999999999  999999885      2479999999722     112334444


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      ++.....   ++||.+.|.  ...+.+.|++.++|+++++|++|+++..
T Consensus        87 ~~~~~~~---~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  130 (145)
T 3erw_A           87 DFIKANK---LTFPIVLDS--KGELMKEYHIITIPTSFLLNEKGEIEKT  130 (145)
T ss_dssp             HHHHHTT---CCSCEEECS--SSHHHHHTTCCEESEEEEECTTCCEEEE
T ss_pred             HHHHHcC---CceeEEEcC--chhHHHhcCcCccCeEEEEcCCCcEEEE
Confidence            4433322   234545554  2468899999999999999999999864

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.63  E-value=7e-16  Score=144.33  Aligned_cols=115  Identities=13%  Similarity=0.178  Sum_probs=85.1

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ..+.+.+|+.+++++++||+|+|+|||+||++|+.++  |.+++++++      +. ++||+|++.+ .....+.+.+..
T Consensus        16 f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~------~~-~~~v~v~~d~-~~~~~~d~~~~~   87 (188)
T 2cvb_A           16 AELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYR------GK-VAFVGINAND-YEKYPEDAPEKM   87 (188)
T ss_dssp             CEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTT------TT-EEEEEEECCC-TTTCGGGSHHHH
T ss_pred             ceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhh------cC-eEEEEEEcCc-cccccccCHHHH
Confidence            4456789999999999999999999999999999998  999999985      23 9999999621 100001223333


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .++..+.   .++||.+.|.  ...+.+.|++.++|+++|+|++|+++..
T Consensus        88 ~~~~~~~---~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  132 (188)
T 2cvb_A           88 AAFAEEH---GIFFPYLLDE--TQEVAKAYRALRTPEVFLFDERRLLRYH  132 (188)
T ss_dssp             HHHHHHH---TCCSCEEECS--SSHHHHHTTCCEESEEEEECTTCBEEEE
T ss_pred             HHHHHHh---CCCceEEECC--cchHHHHcCCCCCCeEEEECCCCcEEEE
Confidence            3333222   2345555564  2457889999999999999999999877

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.63  E-value=7.3e-16  Score=142.59  Aligned_cols=115  Identities=13%  Similarity=0.150  Sum_probs=76.5

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCC--ChhhHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHW--DDPTQK  404 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w--~D~~~~  404 (570)
                      ..+.+.+|+.+++++++||+|+|+|||+||+||+ ++  |.++|+++++      .+++||+|++.+...+.  +.+..+
T Consensus        15 f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~------~~v~vv~vs~d~~~~~~~d~~~~~~   87 (171)
T 3cmi_A           15 LAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKD------EGFTIIGFPCNQFGHQEPGSDEEIA   87 (171)
T ss_dssp             CCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGG------GTEEEEEEEECSCC-----------
T ss_pred             eEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhcc------CCeEEEEEECcccCCCCCCCHHHHH
Confidence            3456788999999999999999999999999999 88  9999999973      36999999972100000  111223


Q ss_pred             HHH-HHHcCCCceeeccccccChH--------HHHHH-HHhCCCCCCc------eEEEECCCCcEEcc
Q 008311          405 KFE-TLQSSMPWYTVYHPTLIDRA--------VIRYV-KDVWHFKNKP------ILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~-~~~~~MPW~aV~fP~l~D~~--------~~~~L-~~~y~V~~IP------tlVVLDpqGkVv~~  456 (570)
                      +|. + ...++     ||.+.|.+        ..+.+ .+.|++.++|      +++|||++|+|+..
T Consensus        88 ~~~~~-~~~~~-----~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~  149 (171)
T 3cmi_A           88 QFCQL-NYGVT-----FPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYER  149 (171)
T ss_dssp             --------CCC-----SCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEE
T ss_pred             HHHHh-ccCCC-----ceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEE
Confidence            332 2 12233     44333211        11122 3468999999      99999999999875

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.63  E-value=8.6e-16  Score=143.12  Aligned_cols=116  Identities=16%  Similarity=0.118  Sum_probs=80.7

Q ss_pred             CcccCC--CCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          329 PLVDGS--TKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       329 pl~~g~--~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ..+.+.  +|+.+++++++||+|+|+|||+||++|+.++  |.++|+++++..-+...+++||.|++ |..   +.+..+
T Consensus        40 f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~-d~~---~~~~~~  115 (183)
T 3lwa_A           40 IGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINV-RDY---SRDIAQ  115 (183)
T ss_dssp             CEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEEC-SCC---CHHHHH
T ss_pred             eeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEEC-CCC---CHHHHH
Confidence            345677  8999999999999999999999999999999  99999999741000012339999996 210   122233


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHHHhC---CCCCCceEEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVW---HFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y---~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .|.+. ..++|     |.+.|..  ..+.+.|   ++.++|++++||++|+++..
T Consensus       116 ~~~~~-~~~~~-----~~~~d~~--~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  162 (183)
T 3lwa_A          116 DFVTD-NGLDY-----PSIYDPP--FMTAASLGGVPASVIPTTIVLDKQHRPAAV  162 (183)
T ss_dssp             HHHHH-TTCCS-----CEEECTT--CGGGGGTTTCCTTCCSEEEEECTTSCEEEE
T ss_pred             HHHHH-cCCCc-----cEEECCc--chHHHHhccCCCCCCCeEEEECCCCcEEEE
Confidence            44321 24444     4444542  2344444   68999999999999999864

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.63  E-value=6.1e-16  Score=141.31  Aligned_cols=114  Identities=11%  Similarity=0.075  Sum_probs=83.1

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCC----------
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHF----------  395 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s----------  395 (570)
                      ...+.+.+|+.+++++++||+|+|+||++||++|+.++  |.+++++++        +++||+|++ |..          
T Consensus        19 ~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--------~v~vv~i~~-d~~~~~~~~~~~~   89 (165)
T 3ha9_A           19 SFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--------EISVIAIDF-WTAEALKALGLNK   89 (165)
T ss_dssp             CCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--------TEEEEEEEC-CSHHHHHHHTCCS
T ss_pred             CCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--------CcEEEEEEe-ccccccccccccc
Confidence            34466788999999999999999999999999999999  999999873        699999996 200          


Q ss_pred             CCC-ChhhHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          396 IHW-DDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       396 ~~w-~D~~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                      ... ...+.+.++++..+..+-  +||.+.|   ...+.+.|++.++|+++|+|++|+++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d---~~~~~~~~~v~~~P~~~lid~~G~i~~  145 (165)
T 3ha9_A           90 PGYPPPDTPEMFRKFIANYGDP--SWIMVMD---DGSLVEKFNVRSIDYIVIMDKSSNVLY  145 (165)
T ss_dssp             TTSCCCCCHHHHHHHHHHHSCT--TSEEEEC---CSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred             ccCCCCCCHHHHHHHHHHcCCC--CeeEEeC---hHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence            000 002333333333222110  3444446   346889999999999999999999998

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.63  E-value=1e-15  Score=133.78  Aligned_cols=105  Identities=13%  Similarity=0.047  Sum_probs=81.4

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ..+.+.+|+.+++++++||+|+|+||++||++|+.++  |.+++++++        +++++.|++.+     +.+..+.|
T Consensus         7 ~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--------~~~~~~v~~~~-----~~~~~~~~   73 (136)
T 1lu4_A            7 FTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--------AVTFVGIATRA-----DVGAMQSF   73 (136)
T ss_dssp             CEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEECSS-----CHHHHHHH
T ss_pred             eEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--------CcEEEEEEcCC-----CHHHHHHH
Confidence            4466788999999999999999999999999999998  999988872        68999999621     23333444


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                      .+. ..++     ||.+.|.  ...+.+.|++.++|+++++|++|+++
T Consensus        74 ~~~-~~~~-----~~~~~d~--~~~~~~~~~i~~~P~~~lid~~G~i~  113 (136)
T 1lu4_A           74 VSK-YNLN-----FTNLNDA--DGVIWARYNVPWQPAFVFYRADGTST  113 (136)
T ss_dssp             HHH-HTCC-----SEEEECT--TSHHHHHTTCCSSSEEEEECTTSCEE
T ss_pred             HHH-cCCC-----ceEEECC--chhHHHhcCCCCCCEEEEECCCCcEE
Confidence            332 2334     4444453  24678899999999999999999998

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.62  E-value=7.7e-16  Score=137.95  Aligned_cols=109  Identities=13%  Similarity=0.177  Sum_probs=85.2

Q ss_pred             cccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          330 LVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       330 l~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      .+.+.+|+.+++++++||+|+|+||++||++|+.++  |.+++++++      +.++.|++|++ |.    ..+..++|.
T Consensus        14 ~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~------~~~~~~v~v~~-d~----~~~~~~~~~   82 (152)
T 2lja_A           14 SYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYA------GKDIHFVSLSC-DK----NKKAWENMV   82 (152)
T ss_dssp             EEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHST------TSSEEEEEEEC-CS----CHHHHHHHH
T ss_pred             EeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhc------cCCeEEEEEEc-cC----cHHHHHHHH
Confidence            566789999999999999999999999999999998  999999885      34799999996 21    222333443


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      + ....+|+.+..    |.  ...+.+.|++.++|+++++|++|+++..
T Consensus        83 ~-~~~~~~~~~~~----d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  124 (152)
T 2lja_A           83 T-KDQLKGIQLHM----GT--DRTFMDAYLINGIPRFILLDRDGKIISA  124 (152)
T ss_dssp             H-HHTCCSEEEEC----SS--CTHHHHHTTCCSSCCEEEECTTSCEEES
T ss_pred             H-hcCCCCceeec----Cc--chhHHHHcCcCCCCEEEEECCCCeEEEc
Confidence            3 23566654443    43  3468889999999999999999999875

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.62  E-value=7.6e-16  Score=150.15  Aligned_cols=110  Identities=16%  Similarity=0.148  Sum_probs=84.3

Q ss_pred             CCCCCeeeccccCCCEEEEEEec-CCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHH
Q 008311          333 GSTKRRVNIEVLRRKNVLLLISD-LDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETL  409 (570)
Q Consensus       333 g~~G~~Vsls~LkGKvVlL~FwA-sWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~  409 (570)
                      +.+|+.+++++++||+|+|+||| +||++|+.++  |.++|+++++      ++++||+|++ |     +.++.+.|.+.
T Consensus        56 d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~------~~v~vv~Is~-D-----~~~~~~~~~~~  123 (222)
T 3ztl_A           56 NGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNS------RNCQVIACST-D-----SQYSHLAWDNL  123 (222)
T ss_dssp             TTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHT------TTEEEEEEES-S-----CHHHHHHHHHS
T ss_pred             CCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHHHHHHHHHH
Confidence            33559999999999999999997 9999999999  9999999973      4799999996 3     24455566543


Q ss_pred             Hc-CCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311          410 QS-SMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       410 ~~-~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~  456 (570)
                      .. ...-..++||.+.|..  ..+.+.|++.      .+|+++|||++|+|+..
T Consensus       124 ~~~~~~~~~~~~~~l~D~~--~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~  175 (222)
T 3ztl_A          124 DRKSGGLGHMKIPLLADRK--QEISKAYGVFDEEDGNAFRGLFIIDPNGILRQI  175 (222)
T ss_dssp             CGGGTSCCSCSSCEEECSS--SHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEE
T ss_pred             hhhhccccccceeEEeCCc--hHHHHHcCCeecCCCCccceEEEECCCCeEEEE
Confidence            21 1011134455555642  4688899998      89999999999999876

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.61  E-value=9.4e-16  Score=139.57  Aligned_cols=106  Identities=10%  Similarity=0.065  Sum_probs=82.6

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ..+.+.+|+.+++++++||+|+|+||++||++|+.++  |.+++++++      +.+++||.|++ |       .+.+.|
T Consensus        24 f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~------~~~~~~v~v~~-d-------~~~~~~   89 (158)
T 3hdc_A           24 FKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFP------KGDLVVLAVNV-E-------KRFPEK   89 (158)
T ss_dssp             CEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSS------TTSEEEEEEEC-S-------SSCCGG
T ss_pred             ceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcc------cCCeEEEEEeC-C-------HHHHHH
Confidence            3456789999999999999999999999999999999  999999985      24799999986 2       222222


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .+ ...++     ||.+.|.  ...+.+.|++.++|+++++|++|+++..
T Consensus        90 ~~-~~~~~-----~~~~~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  131 (158)
T 3hdc_A           90 YR-RAPVS-----FNFLSDA--TGQVQQRYGANRLPDTFIVDRKGIIRQR  131 (158)
T ss_dssp             GG-GCCCS-----CEEEECT--TSHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred             HH-HcCCC-----ceEEECc--hHHHHHHhCCCCcceEEEEcCCCCEEEE
Confidence            21 12333     4444454  3468899999999999999999999875

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.61  E-value=1.4e-15  Score=141.72  Aligned_cols=111  Identities=19%  Similarity=0.204  Sum_probs=82.3

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ..+.+.+|+.+++++++||+|+|+||++||++|+.++  |.++|++++      +.+++||+|++ |..   +.+..+.|
T Consensus        43 f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~------~~~~~vv~v~~-d~~---~~~~~~~~  112 (186)
T 1jfu_A           43 LAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLS------GPNFEVVAINI-DTR---DPEKPKTF  112 (186)
T ss_dssp             CEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHC------BTTEEEEEEEC-CCS---CTTHHHHH
T ss_pred             cEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhc------cCCcEEEEEEC-CCC---CHHHHHHH
Confidence            4456889999999999999999999999999999999  999999995      24799999997 311   12334455


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCC----CCceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK----NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~----~IPtlVVLDpqGkVv~~  456 (570)
                      .+. ...++    ||.+.|..  ..+.+.|++.    ++|+++|||++|+|+..
T Consensus       113 ~~~-~~~~~----~~~~~d~~--~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~  159 (186)
T 1jfu_A          113 LKE-ANLTR----LGYFNDQK--AKVFQDLKAIGRALGMPTSVLVDPQGCEIAT  159 (186)
T ss_dssp             HHH-TTCCT----TCCEECTT--CHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred             HHH-cCCCC----CceEECCc--chHHHHhccccccCCCCEEEEECCCCCEEEE
Confidence            432 22222    23333542  3456667764    99999999999999875

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.61  E-value=1.3e-15  Score=143.26  Aligned_cols=107  Identities=9%  Similarity=0.073  Sum_probs=84.1

Q ss_pred             cccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          330 LVDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       330 l~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      .+.+.+|+.+++++++||+|+|+|| |+||++|+.++  |.++|+++++      .+++||+|+. |     +.+..+.|
T Consensus        35 ~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~------~~~~vv~Vs~-D-----~~~~~~~~  102 (179)
T 3ixr_A           35 PLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQ------INATVLGVSR-D-----SVKSHDSF  102 (179)
T ss_dssp             CEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHT------TTEEEEEEES-C-----CHHHHHHH
T ss_pred             eEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEcC-C-----CHHHHHHH
Confidence            3556789999999999999999999 99999999999  9999999973      4799999996 3     34455566


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCC------------CceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKN------------KPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~------------IPtlVVLDpqGkVv~~  456 (570)
                      .+. ..+     +||.+.|.  ...+.+.|++..            .|+++|||++|+|+..
T Consensus       103 ~~~-~~~-----~f~~l~D~--~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~  156 (179)
T 3ixr_A          103 CAK-QGF-----TFPLVSDS--DAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEA  156 (179)
T ss_dssp             HHH-HTC-----CSCEEECT--TCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEE
T ss_pred             HHH-cCC-----ceEEEECC--chHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEE
Confidence            542 233     45555564  246788898853            6999999999999875

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.61  E-value=1.2e-15  Score=136.84  Aligned_cols=112  Identities=11%  Similarity=0.113  Sum_probs=84.6

Q ss_pred             CCCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          327 LQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      +...+.+.+|+.+++++++||+|+|+||++||++|+.++  |.++++++++      .++.|++|++ |.+   +.+..+
T Consensus         9 p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~------~~~~vv~v~~-~~~---~~~~~~   78 (153)
T 2l5o_A            9 PAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKN------KNFQVLAVAQ-PID---PIESVR   78 (153)
T ss_dssp             CSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGG------TTEEEEEEEC-TTS---CHHHHH
T ss_pred             CCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhcc------CCeEEEEEec-CCC---CHHHHH
Confidence            344566789999999999999999999999999999999  9999999863      4699999986 211   223334


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .|.+ ...++|     |.+.|.  ...+.+.|++.++|+++++|++|+++..
T Consensus        79 ~~~~-~~~~~~-----~~~~d~--~~~~~~~~~i~~~P~~~lid~~G~i~~~  122 (153)
T 2l5o_A           79 QYVK-DYGLPF-----TVMYDA--DKAVGQAFGTQVYPTSVLIGKKGEILKT  122 (153)
T ss_dssp             HHHH-HTTCCS-----EEEECS--SCHHHHHHTCCSSSEEEEECSSSCCCEE
T ss_pred             HHHH-HcCCCc-----eEEcCc--hHHHHHHcCCCccCeEEEECCCCcEEEE
Confidence            4433 123443     333343  2457889999999999999999999754

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.61  E-value=9.4e-16  Score=139.35  Aligned_cols=111  Identities=19%  Similarity=0.127  Sum_probs=85.0

Q ss_pred             CCcccCCCCCeeeccccCCC-EEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhH
Q 008311          328 QPLVDGSTKRRVNIEVLRRK-NVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQ  403 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGK-vVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~  403 (570)
                      ...+.+.+|+.+++++++|| +|+|+|| |+||++|+.++  |.++|++++      +.+++||+|++ |     +.+..
T Consensus        17 ~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~------~~~~~vv~is~-d-----~~~~~   84 (160)
T 1xvw_A           17 DFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFE------NDDSAALAISV-G-----PPPTH   84 (160)
T ss_dssp             CCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTS------SSSEEEEEEES-C-----CHHHH
T ss_pred             CeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHH------HCCcEEEEEeC-C-----CHHHH
Confidence            34456789999999999998 9999998 99999999999  999999885      24799999996 3     23344


Q ss_pred             HHHHHHHcCCCceeeccccccChHHHHHHHHhCCCC----CCc--eEEEECCCCcEEcc
Q 008311          404 KKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK----NKP--ILVVLDPQGRVVSP  456 (570)
Q Consensus       404 ~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~----~IP--tlVVLDpqGkVv~~  456 (570)
                      +.|.+. ...     +||.+.|......+.+.|++.    ++|  +++|+|++|+|+..
T Consensus        85 ~~~~~~-~~~-----~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~  137 (160)
T 1xvw_A           85 KIWATQ-SGF-----TFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFA  137 (160)
T ss_dssp             HHHHHH-HTC-----CSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEE
T ss_pred             HHHHHh-cCC-----CceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEE
Confidence            445432 222     345455631124578899998    999  99999999999875

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.61  E-value=9.3e-16  Score=150.35  Aligned_cols=116  Identities=13%  Similarity=0.079  Sum_probs=86.5

Q ss_pred             CCcccCC--CC--Ceeecccc-CCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCC
Q 008311          328 QPLVDGS--TK--RRVNIEVL-RRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWD  399 (570)
Q Consensus       328 ~pl~~g~--~G--~~Vsls~L-kGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~  399 (570)
                      ...+.+.  +|  +.++++++ +||+|+|+|| |+|||+|+.++  |.++|+++++      .+++||+||+ |     +
T Consensus        33 ~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~------~~v~vv~Is~-D-----~  100 (221)
T 2c0d_A           33 NFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFEN------KNVELLGISV-D-----S  100 (221)
T ss_dssp             CCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHH------TTEEEEEEES-S-----C
T ss_pred             CeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----C
Confidence            3344555  78  89999999 9999999999 99999999999  9999999973      4799999996 3     2


Q ss_pred             hhhHHHHHHHHcCCCce-eeccccccChHHHHHHHHhCCC-----CCCceEEEECCCCcEEccc
Q 008311          400 DPTQKKFETLQSSMPWY-TVYHPTLIDRAVIRYVKDVWHF-----KNKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       400 D~~~~~F~~~~~~MPW~-aV~fP~l~D~~~~~~L~~~y~V-----~~IPtlVVLDpqGkVv~~n  457 (570)
                      .+..+.|.+.....+-+ .++||.+.|.  ...+.+.|++     ..+|+++|||++|+|+...
T Consensus       101 ~~~~~~~~~~~~~~~g~~~~~fp~l~D~--~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~  162 (221)
T 2c0d_A          101 VYSHLAWKNMPIEKGGIGNVEFTLVSDI--NKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQT  162 (221)
T ss_dssp             HHHHHHHHHSCGGGTCCCSCSSEEEECT--TSHHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHHhhhhcCccCCceEEEECC--chHHHHHcCCcccCCCccceEEEECCCCeEEEEE
Confidence            33445555422110101 2345555564  3468889999     4799999999999999763

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.60  E-value=3.3e-15  Score=146.28  Aligned_cols=121  Identities=11%  Similarity=-0.015  Sum_probs=79.2

Q ss_pred             CcccCCC-CCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCC--CCCChhhH
Q 008311          329 PLVDGST-KRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHF--IHWDDPTQ  403 (570)
Q Consensus       329 pl~~g~~-G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s--~~w~D~~~  403 (570)
                      ..+.+.+ |+.+++++++||+|+|+|||+|||||+ ++  |+++|+++++      ++++||+||..+-.  ...+.+..
T Consensus        38 F~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~------~g~~Vlgvs~d~f~~~e~~~~~~i  110 (215)
T 2i3y_A           38 YEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKP------YGLVVLGFPCNQFGKQEPGDNKEI  110 (215)
T ss_dssp             CEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGG------GTEEEEEEECCCSTTCCCSCHHHH
T ss_pred             cEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhcc------CCeEEEEEEccccCcCCCCCHHHH
Confidence            3456788 999999999999999999999999999 88  9999999973      37999999963110  00122334


Q ss_pred             HHHHHHHcCCCceeeccccccCh--------HHHHHHHHhC-------C--------------CCCCceEEEECCCCcEE
Q 008311          404 KKFETLQSSMPWYTVYHPTLIDR--------AVIRYVKDVW-------H--------------FKNKPILVVLDPQGRVV  454 (570)
Q Consensus       404 ~~F~~~~~~MPW~aV~fP~l~D~--------~~~~~L~~~y-------~--------------V~~IPtlVVLDpqGkVv  454 (570)
                      ++|.++...-.=+.++||.+.|.        +..+.+....       +              ++..|+++|||++|+|+
T Consensus       111 ~~f~~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv  190 (215)
T 2i3y_A          111 LPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPV  190 (215)
T ss_dssp             HHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEE
T ss_pred             HHHHHhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEE
Confidence            45544210000134456654321        1123343321       1              23348999999999998


Q ss_pred             cc
Q 008311          455 SP  456 (570)
Q Consensus       455 ~~  456 (570)
                      .+
T Consensus       191 ~~  192 (215)
T 2i3y_A          191 MR  192 (215)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.60  E-value=6.5e-15  Score=134.16  Aligned_cols=118  Identities=15%  Similarity=0.160  Sum_probs=79.6

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccC-C-CCCChhhHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDH-F-IHWDDPTQK  404 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~-s-~~w~D~~~~  404 (570)
                      ..+.+.+|+.+++++++||+|+|+|||+|||+|+.++  |.++|+++++      ++++||+|++.+. . ..++.+..+
T Consensus        14 f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~------~~~~vv~v~~d~~~~~~~~~~~~~~   87 (169)
T 2v1m_A           14 FTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVG------KGLRILAFPCNQFGGQEPWAEAEIK   87 (169)
T ss_dssp             CEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTEEEEEEECCCSTTCCCSCHHHHH
T ss_pred             ceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhc------CCeEEEEEECCccCCCCCCCHHHHH
Confidence            3456789999999999999999999999999999999  9999999963      3699999997210 0 011233445


Q ss_pred             HH-HHHHcCCCceeeccccccChH------HHHHHH-HhCC-----CCCCceEEEECCCCcEEcc
Q 008311          405 KF-ETLQSSMPWYTVYHPTLIDRA------VIRYVK-DVWH-----FKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F-~~~~~~MPW~aV~fP~l~D~~------~~~~L~-~~y~-----V~~IPtlVVLDpqGkVv~~  456 (570)
                      .| .+. ...+|..+..   .|..      ..+.+. ..++     ++.+|+++|||++|+++..
T Consensus        88 ~~~~~~-~~~~~~~~~~---~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~  148 (169)
T 2v1m_A           88 KFVTEK-YGVQFDMFSK---IKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKR  148 (169)
T ss_dssp             HHHHHH-HCCCSEEBCC---CCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHh-cCCCCceEEE---EeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEE
Confidence            55 221 2334322210   1211      112222 2235     5667999999999999875

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.60  E-value=1.2e-15  Score=147.84  Aligned_cols=109  Identities=15%  Similarity=0.074  Sum_probs=82.5

Q ss_pred             CCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHc
Q 008311          335 TKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQS  411 (570)
Q Consensus       335 ~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~  411 (570)
                      +|+.+++++++||+|+|+|| |+|||+|+.++  |.++|+++++      .+++||+||+ |     +.+..+.|.+...
T Consensus        37 ~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~------~~v~vv~Is~-D-----~~~~~~~~~~~~~  104 (211)
T 2pn8_A           37 EFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS------INTEVVACSV-D-----SQFTHLAWINTPR  104 (211)
T ss_dssp             EEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT------TTEEEEEEES-S-----CHHHHHHHHTSCG
T ss_pred             CCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHHHHHHHHHHhh
Confidence            56899999999999999999 99999999999  9999999963      4799999996 3     2333444543211


Q ss_pred             CC-CceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEccc
Q 008311          412 SM-PWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       412 ~M-PW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~n  457 (570)
                      +. ..-.++||.+.|.  ...+.+.|++.      .+|+++|||++|+|+...
T Consensus       105 ~~~g~~~~~fp~l~D~--~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~  155 (211)
T 2pn8_A          105 RQGGLGPIRIPLLSDL--THQISKDYGVYLEDSGHTLRGLFIIDDKGILRQIT  155 (211)
T ss_dssp             GGTCCCSCSSCEEECT--TSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             hccCccCCceEEEECC--chHHHHHcCCcccCCCcccceEEEECCCCEEEEEE
Confidence            00 0003456666674  35688899994      699999999999998763

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.60  E-value=2.2e-15  Score=133.19  Aligned_cols=109  Identities=13%  Similarity=0.165  Sum_probs=81.2

Q ss_pred             CCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHH
Q 008311          333 GSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQ  410 (570)
Q Consensus       333 g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~  410 (570)
                      +.+|+.+++++++||+|+|+||++||++|+.++  |.++++++++       +++|++|++.+..   .+.+.+.+.++.
T Consensus        16 ~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~-------~~~~~~v~~~~~~---~~~~~~~~~~~~   85 (148)
T 2b5x_A           16 WLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD-------QLNVVAVHMPRSE---DDLDPGKIKETA   85 (148)
T ss_dssp             EESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-------TSEEEEEECCCST---TTSSHHHHHHHH
T ss_pred             cccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcC-------CcEEEEEEcCCCc---cccCHHHHHHHH
Confidence            458999999999999999999999999999999  9999999852       3999999962211   111233344433


Q ss_pred             cCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          411 SSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       411 ~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .+..   ++||.+.|.  ...+.+.|++.++|+++++|++|+++..
T Consensus        86 ~~~~---~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  126 (148)
T 2b5x_A           86 AEHD---ITQPIFVDS--DHALTDAFENEYVPAYYVFDKTGQLRHF  126 (148)
T ss_dssp             HHTT---CCSCEEECS--SCHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred             HHcC---CCcceEECC--chhHHHHhCCCCCCEEEEECCCCcEEEE
Confidence            3222   234444453  2458889999999999999999999874

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.60  E-value=7e-16  Score=146.46  Aligned_cols=114  Identities=10%  Similarity=0.070  Sum_probs=88.9

Q ss_pred             cccCC--CCC---eeecccc-CCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCCh
Q 008311          330 LVDGS--TKR---RVNIEVL-RRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDD  400 (570)
Q Consensus       330 l~~g~--~G~---~Vsls~L-kGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D  400 (570)
                      .+.+.  +|+   .++++++ +||+|+|+|| |+||+||+.++  |.++|+++++      .+++||+|++ |     ..
T Consensus        11 ~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~------~~v~vv~Is~-d-----~~   78 (198)
T 1zof_A           11 KAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHE------KGFNVIGVSI-D-----SE   78 (198)
T ss_dssp             EEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHH------TTEEEEEEES-S-----CH
T ss_pred             EeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHH------cCCEEEEEEC-C-----CH
Confidence            34555  788   9999999 9999999999 99999999999  9999999973      3799999996 3     23


Q ss_pred             hhHHHHHH-HHcCCCceeeccccccChHHHHHHHHhCCCC-----CCceEEEECCCCcEEccc
Q 008311          401 PTQKKFET-LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-----NKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       401 ~~~~~F~~-~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-----~IPtlVVLDpqGkVv~~n  457 (570)
                      +..+.|.+ +.....|+.++||.+.|.  ...+.+.|++.     ++|+++|||++|+|+...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~  139 (198)
T 1zof_A           79 QVHFAWKNTPVEKGGIGQVSFPMVADI--TKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAV  139 (198)
T ss_dssp             HHHHHHHTSCGGGTCCCCCSSCEEECT--TSHHHHHTTCEETTTEECEEEEEEETTTEEEEEE
T ss_pred             HHHHHHHHhhhhcccccCceeEEEECC--chHHHHHhCCcccCCcccceEEEECCCCEEEEEE
Confidence            33444433 122234556677776674  35688899999     999999999999998763

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.60  E-value=6.7e-15  Score=134.19  Aligned_cols=117  Identities=15%  Similarity=0.275  Sum_probs=79.7

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCC-CC-CChhhHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHF-IH-WDDPTQK  404 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s-~~-w~D~~~~  404 (570)
                      ..+.+.+|+.+++++++||+|+|+|||+||++|+.++  |.++|+++++      .+++||+|++.+.. .+ .+.+..+
T Consensus        15 f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~------~~~~vv~vs~d~~~~~~~~~~~~~~   88 (170)
T 2p5q_A           15 FTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKD------QGLEILAFPCNQFGEEEPGTNDQIT   88 (170)
T ss_dssp             CEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTEEEEEEECCTTTTCCCSCHHHHH
T ss_pred             eEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhcc------CCEEEEEEECCCCCCCCCCCHHHHH
Confidence            4456789999999999999999999999999999999  9999999973      36999999972100 00 0223334


Q ss_pred             HHHHHHcCCCceeeccccc--cChH------HHHHHH-HhCCC--CCCc---eEEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYHPTL--IDRA------VIRYVK-DVWHF--KNKP---ILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l--~D~~------~~~~L~-~~y~V--~~IP---tlVVLDpqGkVv~~  456 (570)
                      .|.+....++     ||.+  .|..      ..+.+. +.+++  .++|   +++|||++|+|+..
T Consensus        89 ~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~  149 (170)
T 2p5q_A           89 DFVCTRFKSE-----FPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDR  149 (170)
T ss_dssp             HHHHHHTCCC-----SCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHhcCCC-----ceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEe
Confidence            4433112333     3333  1221      111121 23567  7889   99999999999875

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.59  E-value=2.2e-15  Score=138.69  Aligned_cols=108  Identities=11%  Similarity=0.046  Sum_probs=82.3

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEec-CCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISD-LDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwA-sWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ..+.+.+|+.+++++++||+|+|+||+ +||++|+.++  |.++|+++ .       +++||+||+ |     +.+..+.
T Consensus        25 f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~-------~v~vv~is~-d-----~~~~~~~   90 (163)
T 1psq_A           25 FSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-D-------NTVVLTVSM-D-----LPFAQKR   90 (163)
T ss_dssp             CEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T-------TEEEEEEES-S-----CHHHHHH
T ss_pred             EEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-C-------CcEEEEEEC-C-----CHHHHHH
Confidence            445678999999999999999999995 9999999999  99998877 2       599999996 3     2344555


Q ss_pred             HHHHHcCCCceeeccccccC-hHHHHHHHHhCCCC----CC--ceEEEECCCCcEEccc
Q 008311          406 FETLQSSMPWYTVYHPTLID-RAVIRYVKDVWHFK----NK--PILVVLDPQGRVVSPN  457 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D-~~~~~~L~~~y~V~----~I--PtlVVLDpqGkVv~~n  457 (570)
                      |.+. ...+    +||.+.| .  ...+.+.|++.    ++  |+++|||++|+|+...
T Consensus        91 ~~~~-~~~~----~~~~l~D~~--~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~  142 (163)
T 1psq_A           91 WCGA-EGLD----NAIMLSDYF--DHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVE  142 (163)
T ss_dssp             HHHH-HTCT----TSEEEECTT--TCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEE
T ss_pred             HHHh-cCCC----CcEEecCCc--hhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEE
Confidence            6542 2330    3444445 3  24678889987    44  9999999999998763

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.59  E-value=5.9e-15  Score=137.61  Aligned_cols=118  Identities=15%  Similarity=0.115  Sum_probs=85.2

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCH-HhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDIS-QEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCp-PCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ..+.+.+|+.+++++++||+|+|+||++||| +|..++  |.++|+++++    .+.+++||+||+ |.. + +.+..++
T Consensus        11 f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~----~~~~~~vv~is~-d~~-d-~~~~~~~   83 (170)
T 3me7_A           11 ITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGT----PGKDFWVITFTF-DPK-D-TLEDIKR   83 (170)
T ss_dssp             CEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCC----BTTTBEEEEEEC-CTT-C-CHHHHHH
T ss_pred             eEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhh----cCCceEEEEEEC-CCC-C-CHHHHHH
Confidence            3567889999999999999999999999997 699999  9999999963    246799999997 321 1 2334455


Q ss_pred             HHHHH-cCC-CceeeccccccChHHHHHHHHhCCC---------CCCceEEEECCCCcEEcc
Q 008311          406 FETLQ-SSM-PWYTVYHPTLIDRAVIRYVKDVWHF---------KNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       406 F~~~~-~~M-PW~aV~fP~l~D~~~~~~L~~~y~V---------~~IPtlVVLDpqGkVv~~  456 (570)
                      |.+.. ... .|.-+.   ..+.+....+.+.||+         ...|+++|||++|+|+..
T Consensus        84 ~~~~~~~~~~~w~~l~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~  142 (170)
T 3me7_A           84 FQKEYGIDGKGWKVVK---AKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDY  142 (170)
T ss_dssp             HHHHTTCCSSSEEEEE---ESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEE
T ss_pred             HHHHcCCCCCCeEEEe---CCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEE
Confidence            54322 122 243211   1144456778888774         457899999999999864

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.59  E-value=6.4e-15  Score=140.82  Aligned_cols=117  Identities=11%  Similarity=0.101  Sum_probs=83.8

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCHH-hHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQ-EELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpP-Cr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ...+.+.+|+.+++++++||+|+|+|||+||+| |+.++  |.++|+++++.   .+.+++||+|++ |..   .| ..+
T Consensus        23 ~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~---~~~~v~vv~Is~-D~~---~d-~~~   94 (200)
T 2b7k_A           23 PFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSK---YGITLQPLFITC-DPA---RD-SPA   94 (200)
T ss_dssp             CCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHH---HCCCCEEEEEES-CTT---TC-CHH
T ss_pred             CEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHh---hCCceEEEEEEC-CCC---CC-CHH
Confidence            344567899999999999999999999999998 99999  99999999741   135799999997 321   01 223


Q ss_pred             HHHHHHc--CCCceeeccccccChHHHHHHHHhCCCC-CCc---------------eEEEECCCCcEEcc
Q 008311          405 KFETLQS--SMPWYTVYHPTLIDRAVIRYVKDVWHFK-NKP---------------ILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~--~MPW~aV~fP~l~D~~~~~~L~~~y~V~-~IP---------------tlVVLDpqGkVv~~  456 (570)
                      ..+++..  ..+|..++.    +.+....+.+.|++. ++|               +++|||++|+|+..
T Consensus        95 ~~~~~~~~~~~~~~~l~~----~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~  160 (200)
T 2b7k_A           95 VLKEYLSDFHPSILGLTG----TFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA  160 (200)
T ss_dssp             HHHHHHTTSCTTCEEEEC----CHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred             HHHHHHHHcCCCceEEeC----CHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEE
Confidence            3344433  345655542    223456788889987 454               88999999999865

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.59  E-value=6.8e-16  Score=145.84  Aligned_cols=117  Identities=14%  Similarity=0.127  Sum_probs=81.9

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccC--CCCCChhhH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDH--FIHWDDPTQ  403 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~--s~~w~D~~~  403 (570)
                      ...+.+.+|+.+++++++||+|+|+|||+|||+|+.++  |.++|+++++      .+++||+|++.+.  ....+.+..
T Consensus        30 ~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~------~~v~vv~vs~d~~~~~~~~~~~~~  103 (190)
T 2vup_A           30 DFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKS------QGFTVLAFPCNQFGGQEPGNEEEI  103 (190)
T ss_dssp             GSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTCEEEEEECCCSTTCCCSCHHHH
T ss_pred             CeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhc------CCeEEEEEEcCccCCCCCCCHHHH
Confidence            34456789999999999999999999999999999999  9999999973      3699999997210  000123334


Q ss_pred             HHHH-HHHcCCCceeecccccc--ChH------HHHHH-HHhCCCCCCc------eEEEECCCCcEEcc
Q 008311          404 KKFE-TLQSSMPWYTVYHPTLI--DRA------VIRYV-KDVWHFKNKP------ILVVLDPQGRVVSP  456 (570)
Q Consensus       404 ~~F~-~~~~~MPW~aV~fP~l~--D~~------~~~~L-~~~y~V~~IP------tlVVLDpqGkVv~~  456 (570)
                      ++|. +. ...+     ||.+.  |..      ..+.+ .+.|++.++|      +++|||++|+|+..
T Consensus       104 ~~~~~~~-~~~~-----~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~  166 (190)
T 2vup_A          104 KEFVCTK-FKAE-----FPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVER  166 (190)
T ss_dssp             HHHHHHH-HCCC-----SCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHHh-cCCC-----eEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEE
Confidence            4554 21 2233     33332  211      11122 3457999999      99999999999875

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.59  E-value=5.9e-15  Score=132.72  Aligned_cols=111  Identities=15%  Similarity=0.160  Sum_probs=86.8

Q ss_pred             CCCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          327 LQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      +...+.+.+|+.+++++++ |+|+|+|||+||++|+.++  |.++++++         +++|++|++ |     .+.+.+
T Consensus        12 p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---------~v~~v~v~~-d-----~~~~~~   75 (154)
T 3ia1_A           12 PDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---------GVPFYVISR-E-----PRDTRE   75 (154)
T ss_dssp             CCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---------CCCEEEEEC-C-----TTCCHH
T ss_pred             CceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---------CCeEEEEeC-C-----CcccHH
Confidence            3345667899999999999 9999999999999999999  99999887         378999996 2     123445


Q ss_pred             HHHHHHcCCCceeeccccccCh-HHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDR-AVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~-~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .++++..+.++   +||.+.|. .....+.+.|++.++|+++++|++|+++..
T Consensus        76 ~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  125 (154)
T 3ia1_A           76 VVLEYMKTYPR---FIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVAL  125 (154)
T ss_dssp             HHHHHHTTCTT---EEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEE
T ss_pred             HHHHHHHHcCC---CcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEE
Confidence            56666555443   45555551 124678999999999999999999999875

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.59  E-value=4.8e-15  Score=138.74  Aligned_cols=116  Identities=13%  Similarity=0.069  Sum_probs=78.5

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccC-CCC-CChhhHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDH-FIH-WDDPTQK  404 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~-s~~-w~D~~~~  404 (570)
                      ..+.+.+|+.+++++++||+|+|+|||+|||+|+.++  |.++|+++++      ++++||+|++.+. +.+ .+.+..+
T Consensus        30 f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~------~~v~vv~vs~d~~~~~e~~~~~~~~  103 (183)
T 2obi_A           30 FSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAE------CGLRILAFPCNQFGKQEPGSNEEIK  103 (183)
T ss_dssp             CEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTEEEEEEECCCSTTCCCSCHHHHH
T ss_pred             eEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhc------CCeEEEEEECCCCCCCCCCCHHHHH
Confidence            4456789999999999999999999999999999999  9999999973      3699999996210 000 1223334


Q ss_pred             HHHHHHcCCCceeecccccc--ChH------HHHHHHHhC---C-----CCCCceEEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYHPTLI--DRA------VIRYVKDVW---H-----FKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~--D~~------~~~~L~~~y---~-----V~~IPtlVVLDpqGkVv~~  456 (570)
                      +|.   .+.   .++||.+.  |..      ..+.+....   +     ++.+|+++|||++|+|+..
T Consensus       104 ~~~---~~~---~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~  165 (183)
T 2obi_A          104 EFA---AGY---NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR  165 (183)
T ss_dssp             HHH---HTT---TCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEE
T ss_pred             HHH---HHc---CCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEE
Confidence            443   222   22344332  211      112222221   3     4557999999999999875

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.59  E-value=4.3e-15  Score=129.25  Aligned_cols=106  Identities=16%  Similarity=0.098  Sum_probs=79.9

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ..+.+.+|+.+++++++||+|+|+||++||++|+.++  |.+++++++        +++++.|++.+     +.+..+.|
T Consensus         8 ~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--------~~~~~~v~~~~-----~~~~~~~~   74 (136)
T 1zzo_A            8 FSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--------EVTFVGVAGLD-----QVPAMQEF   74 (136)
T ss_dssp             CEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEECSS-----CHHHHHHH
T ss_pred             cccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--------CeEEEEEeCCC-----CHHHHHHH
Confidence            3456778999999999999999999999999999999  999988772        58999999621     22233333


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                      .+. ..++    +||.+.|.  ...+.+.|++.++|+++++|++|+++
T Consensus        75 ~~~-~~~~----~~~~~~d~--~~~~~~~~~i~~~P~~~~id~~g~i~  115 (136)
T 1zzo_A           75 VNK-YPVK----TFTQLADT--DGSVWANFGVTQQPAYAFVDPHGNVD  115 (136)
T ss_dssp             HHH-TTCT----TSEEEECT--TCHHHHHTTCCSSSEEEEECTTCCEE
T ss_pred             HHH-cCCC----ceEEEEcC--CcHHHHHcCCCCCceEEEECCCCCEE
Confidence            321 2330    23333443  24678899999999999999999997

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.59  E-value=3.7e-15  Score=136.71  Aligned_cols=117  Identities=10%  Similarity=0.132  Sum_probs=81.8

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCH-HhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDIS-QEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCp-PCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ...+.+.+|+.+++++++||+|+|+|||+||+ +|+.++  |.++|+++++   + +.+++||+|++ |..    ..+.+
T Consensus        15 ~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~---~-~~~~~vv~is~-d~~----~d~~~   85 (174)
T 1xzo_A           15 PFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKA---E-NIDVRIISFSV-DPE----NDKPK   85 (174)
T ss_dssp             CCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHH---T-TCCCEEEEEES-CTT----TCCHH
T ss_pred             CcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhh---c-CCcEEEEEEEe-CCC----CCCHH
Confidence            34466889999999999999999999999999 999999  9999999974   2 33699999997 310    01223


Q ss_pred             HHHHHHcCCCceeecc---ccccC--hHHHHHHHH------------hCCCCCCceEEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYH---PTLID--RAVIRYVKD------------VWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~f---P~l~D--~~~~~~L~~------------~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      ..+++..+..   ++|   |.+.|  .+..+.+..            .|++..+|+++|||++|+|+..
T Consensus        86 ~~~~~~~~~~---~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~  151 (174)
T 1xzo_A           86 QLKKFAANYP---LSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD  151 (174)
T ss_dssp             HHHHHHTTSC---CCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred             HHHHHHHHcC---CCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEE
Confidence            3344443322   223   33334  222222221            2567889999999999999875

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.37  E-value=9.7e-17  Score=145.73  Aligned_cols=110  Identities=17%  Similarity=0.175  Sum_probs=83.5

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHH-HHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQ-IYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~-iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ..+.+.+|+.+++++++||+|+|+|||+||++|+.++  |.+ ++++++.     +.+++||.|++ |       .+.+.
T Consensus        16 f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~-----~~~~~vv~v~~-d-------~~~~~   82 (159)
T 2ls5_A           16 FTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKD-----NADFALIGIDR-D-------EPLEK   82 (159)
Confidence            3456778999999999999999999999999999999  888 9988851     34799999986 2       22222


Q ss_pred             HHHHHcCCCceeeccccccChHHHHHHHHhCC--CCCCceEEEECCCCcEEcc
Q 008311          406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWH--FKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~--V~~IPtlVVLDpqGkVv~~  456 (570)
                      .+++..+..   ++||.+.|.  ...+.+.|+  +.++|+++++|++|+++..
T Consensus        83 ~~~~~~~~~---~~~~~~~d~--~~~~~~~~~~~~~~~P~~~lid~~G~i~~~  130 (159)
T 2ls5_A           83 VLAFAKSTG---VTYPLGLDP--GADIFAKYALRDAGITRNVLIDREGKIVKL  130 (159)
Confidence            333333322   355666664  356888999  5679999999999999875

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.59  E-value=5.5e-15  Score=143.61  Aligned_cols=56  Identities=11%  Similarity=-0.071  Sum_probs=49.9

Q ss_pred             CcccCCC-CCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          329 PLVDGST-KRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       329 pl~~g~~-G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      ..+.+.+ |+.+++++++||+|+|+|||+||||| .++  |.++|+++++      ++++||+||.
T Consensus        20 F~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~------~g~~vlgvs~   78 (207)
T 2r37_A           20 YGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAP------FGLVILGFPC   78 (207)
T ss_dssp             CEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGG------GTEEEEEEEC
T ss_pred             eEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhcc------CCEEEEEEEC
Confidence            3456778 99999999999999999999999999 678  9999999973      3699999996

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.59  E-value=1.8e-16  Score=147.87  Aligned_cols=110  Identities=17%  Similarity=0.173  Sum_probs=85.8

Q ss_pred             CCCcccCCCCCeeecccc--CCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChh
Q 008311          327 LQPLVDGSTKRRVNIEVL--RRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDP  401 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~L--kGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~  401 (570)
                      |...+.+.+|+.++++++  +||+|+|+|| |+|||+|+.++  |.+.|+++++      .+++||+||. |     +.+
T Consensus        12 PdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~------~~v~vv~is~-d-----~~~   79 (164)
T 4gqc_A           12 PDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEK------ANAEVLAISV-D-----SPW   79 (164)
T ss_dssp             CCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGG------SSSEEEEEES-S-----CHH
T ss_pred             cCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhc------cCceEEEecC-C-----CHH
Confidence            444566889999999998  8999999887 99999999999  9999999963      4799999996 3     344


Q ss_pred             hHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCC----------CCceEEEECCCCcEEcc
Q 008311          402 TQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK----------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       402 ~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~----------~IPtlVVLDpqGkVv~~  456 (570)
                      ..++|.+. ..     ++||.+.|..  ..+.+.||+.          ..|+++|||++|+|+..
T Consensus        80 ~~~~~~~~-~~-----~~fp~l~D~~--~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~  136 (164)
T 4gqc_A           80 CLKKFKDE-NR-----LAFNLLSDYN--REVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYK  136 (164)
T ss_dssp             HHHHHHHH-TT-----CCSEEEECTT--SHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEE
T ss_pred             HHHHHHHh-cC-----cccceeecCc--hHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEE
Confidence            45666542 23     3566666753  4688899984          37899999999999865

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.59  E-value=3.3e-15  Score=148.18  Aligned_cols=116  Identities=15%  Similarity=0.086  Sum_probs=87.9

Q ss_pred             CCCccc-----CCCCCeeeccccCCCEEEEEEec-CCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCC
Q 008311          327 LQPLVD-----GSTKRRVNIEVLRRKNVLLLISD-LDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHW  398 (570)
Q Consensus       327 ~~pl~~-----g~~G~~Vsls~LkGKvVlL~FwA-sWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w  398 (570)
                      +.|.|.     +.+|+.+++++++||+|+|+||+ +|||+|+.++  |.++|+++++      .+++||+||+ |     
T Consensus        53 ~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~------~gv~vv~Is~-D-----  120 (240)
T 3qpm_A           53 PAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRA------INTEVVACSV-D-----  120 (240)
T ss_dssp             BCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHT------TTEEEEEEES-S-----
T ss_pred             CCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----
Confidence            455554     45677999999999999999999 9999999999  9999999973      4799999996 3     


Q ss_pred             ChhhHHHHHHHH-cCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311          399 DDPTQKKFETLQ-SSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       399 ~D~~~~~F~~~~-~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~  456 (570)
                      +.+..+.|.+.. ....-..++||.+.|..  ..+.+.|++.      .+|+++|||++|+|+..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~--~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~  183 (240)
T 3qpm_A          121 SQFTHLAWIITPRKQGGLGPMKIPLLSDLT--HQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQI  183 (240)
T ss_dssp             CHHHHHHHHHSCGGGTCCCSCSSCEEECTT--SHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             CHHHHHHHHHHHHhhcCCCCCceeEEeCch--HHHHHHhCCccccCCCccceEEEEcCCCeEEEE
Confidence            234445564421 11111134566666753  5788999997      68999999999999876

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.59  E-value=5.4e-15  Score=138.23  Aligned_cols=111  Identities=15%  Similarity=0.068  Sum_probs=80.9

Q ss_pred             cCCCCCcccCCCC--CeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCC
Q 008311          324 KDDLQPLVDGSTK--RRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWD  399 (570)
Q Consensus       324 k~~~~pl~~g~~G--~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~  399 (570)
                      ...+...+.+.+|  +.+++++++||+|+|+|||+||++|+.++  |.++|++          +++||+|++.|     +
T Consensus        34 ~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----------~v~vv~vs~~d-----~   98 (176)
T 3kh7_A           34 KPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ----------GVVIYGINYKD-----D   98 (176)
T ss_dssp             SBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----------TCEEEEEEESC-----C
T ss_pred             CcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC----------CCEEEEEeCCC-----C
Confidence            3334445667777  89999999999999999999999999998  8887753          48999999722     2


Q ss_pred             hhhHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          400 DPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       400 D~~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .+..+.|.+. ...+|..+    +.|.  ...+.+.|++.++|+++|||++|+|+..
T Consensus        99 ~~~~~~~~~~-~~~~~~~~----~~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  148 (176)
T 3kh7_A           99 NAAAIKWLNE-LHNPYLLS----ISDA--DGTLGLDLGVYGAPETYLIDKQGIIRHK  148 (176)
T ss_dssp             HHHHHHHHHH-TTCCCSEE----EEET--TCHHHHHHTCCSSCEEEEECTTCBEEEE
T ss_pred             HHHHHHHHHH-cCCCCceE----EECC--cchHHHHcCCCCCCeEEEECCCCeEEEE
Confidence            3333344321 23444322    2243  3468889999999999999999999864

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.59  E-value=1.3e-14  Score=135.62  Aligned_cols=120  Identities=18%  Similarity=0.238  Sum_probs=78.6

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCC--CCCChhhHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHF--IHWDDPTQK  404 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s--~~w~D~~~~  404 (570)
                      ..+.+.+|+.+++++++||+|+|+|||+|||||+.++  |.++|+++++      ++++||+|++.+-.  ..-+.+..+
T Consensus        21 f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~------~~~~vi~is~d~~~~~~~d~~~~~~   94 (180)
T 3kij_A           21 FEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGP------SHFSVLAFPCNQFGESEPRPSKEVE   94 (180)
T ss_dssp             CEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTT------TSEEEEEEECCCSTTCCCSCHHHHH
T ss_pred             eEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhcc------CCeEEEEEECCccccCCCCCHHHHH
Confidence            3356789999999999999999999999999999999  9999999963      47999999963200  000233344


Q ss_pred             HHHHHHcCCCceeeccccccCh---HHHHHHHHhCCCCCCce----EEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDR---AVIRYVKDVWHFKNKPI----LVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~---~~~~~L~~~y~V~~IPt----lVVLDpqGkVv~~  456 (570)
                      +|.+.....+|..+......+.   .....+...  +.++|+    ++|||++|+|+..
T Consensus        95 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~p~~~~~~~lid~~G~i~~~  151 (180)
T 3kij_A           95 SFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDS--SKKEPRWNFWKYLVNPEGQVVKF  151 (180)
T ss_dssp             HHHHHHHCCCSCBBCCCCCSSTTCCHHHHHHHHH--HTCCCSSTTCEEEECTTSCEEEE
T ss_pred             HHHHHhcCCCCceeeeeeccCccccHHHHHHHhc--CCCCccccceEEEECCCCCEEEE
Confidence            5543212233221110001111   122233332  347898    9999999999875

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.58  E-value=4.5e-16  Score=145.95  Aligned_cols=117  Identities=14%  Similarity=0.122  Sum_probs=78.3

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccC-CCCC-ChhhH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDH-FIHW-DDPTQ  403 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~-s~~w-~D~~~  403 (570)
                      ...+.+.+|+.+++++++||+|+|+|||+|||||+.++  |.++|+++++      ++++||+|++.+. ..+. +.+..
T Consensus        31 ~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~------~~v~vv~vs~d~~~~~e~~~~~~~  104 (181)
T 2p31_A           31 DFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGP------HHFNVLAFPCNQFGQQEPDSNKEI  104 (181)
T ss_dssp             GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTEEEEEEECCCSTTCCCSCHHHH
T ss_pred             ceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhc------CCEEEEEEECcCCCCCCCCCHHHH
Confidence            34456789999999999999999999999999999999  9999999973      3699999997210 0000 12233


Q ss_pred             HHHHHHHcCCCceeecccccc--ChHHH--HHHHHhCCCCCCc-------eEEEECCCCcEEcc
Q 008311          404 KKFETLQSSMPWYTVYHPTLI--DRAVI--RYVKDVWHFKNKP-------ILVVLDPQGRVVSP  456 (570)
Q Consensus       404 ~~F~~~~~~MPW~aV~fP~l~--D~~~~--~~L~~~y~V~~IP-------tlVVLDpqGkVv~~  456 (570)
                      +.|.+-...+     +||.+.  |..+.  ..+. .|.+.++|       +++|||++|+|+..
T Consensus       105 ~~~~~~~~~~-----~~p~~~~~d~~g~~~~~~~-~~~~~~~P~~~~~~~~~~lid~~G~i~~~  162 (181)
T 2p31_A          105 ESFARRTYSV-----SFPMFSKIAVTGTGAHPAF-KYLAQTSGKEPTWNFWKYLVAPDGKVVGA  162 (181)
T ss_dssp             HHHHHHHHCC-----CSCBBCCCCCSSTTSCHHH-HHHHHHHSCCCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHhhcCC-----CceeEeecccCCccchhhh-hhhhhcCCCccccceeEEEEcCCCCEEEE
Confidence            4443321223     344332  21110  0011 23456678       99999999999875

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.58  E-value=1.7e-15  Score=142.04  Aligned_cols=116  Identities=11%  Similarity=0.104  Sum_probs=84.1

Q ss_pred             Cccc-CCCCCeeeccccCCC-EEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          329 PLVD-GSTKRRVNIEVLRRK-NVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       329 pl~~-g~~G~~Vsls~LkGK-vVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ..+. +.+|+.+++++++|| +|+|+|||+||++|+.++  |.++++++++      .+++||.|++ |........+.+
T Consensus        27 f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~------~~v~vv~v~~-d~~~~~~~d~~~   99 (196)
T 2ywi_A           27 FALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMP------KGVSFVAINS-NDAEQYPEDSPE   99 (196)
T ss_dssp             CEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGG------GTCEEEEEEC-SCTTTCGGGSHH
T ss_pred             eeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHh------CCcEEEEEEC-CccccccccCHH
Confidence            3455 789999999999998 599999999999999999  9999999963      3699999996 210000001223


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      ...++..+.   .++||.+.|.  ...+.+.|++.++|+++|+|++|+++..
T Consensus       100 ~~~~~~~~~---~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  146 (196)
T 2ywi_A          100 NMKKVAEEL---GYPFPYLYDE--TQEVAKAYDAACTPDFYIFDRDLKCVYR  146 (196)
T ss_dssp             HHHHHHHHH---TCCSCEEECS--SCHHHHHHTCCEESEEEEEETTCBEEEE
T ss_pred             HHHHHHHHc---CCCceEEECC--chHHHHHhCCCCCCeEEEEcCCCeEEEc
Confidence            333332221   2344545554  2457889999999999999999999876

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.58  E-value=3.3e-15  Score=141.45  Aligned_cols=111  Identities=12%  Similarity=0.056  Sum_probs=83.9

Q ss_pred             ccCC-CC--CeeeccccCCCEEEEEEec-CCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          331 VDGS-TK--RRVNIEVLRRKNVLLLISD-LDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       331 ~~g~-~G--~~Vsls~LkGKvVlL~FwA-sWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      +.+. +|  +.+++++++||+|+|+||+ +|||+|+.++  |.++|+++++      .+++||+||+ |     +.+..+
T Consensus        12 l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~------~~v~vv~Is~-d-----~~~~~~   79 (186)
T 1n8j_A           12 NQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQK------LGVDVYSVST-D-----THFTHK   79 (186)
T ss_dssp             EEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH------TTEEEEEEES-S-----CHHHHH
T ss_pred             eecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHHHHH
Confidence            4455 58  8999999999999999995 9999999999  9999999973      4799999996 3     233445


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEccc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~n  457 (570)
                      .|.+...  .+-.++||.+.|.  ...+.+.|++.      ..|+++|||++|+|+...
T Consensus        80 ~~~~~~~--~~~~~~fp~l~D~--~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~  134 (186)
T 1n8j_A           80 AWHSSSE--TIAKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE  134 (186)
T ss_dssp             HHHHHCT--TGGGCCSEEEECT--TSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHcC--cccCCceeEEECC--chHHHHHhCCccCCCCceeeEEEEECCCCeEEEEE
Confidence            5544221  1113445555564  34578889987      379999999999998763

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.58  E-value=1.6e-15  Score=142.62  Aligned_cols=117  Identities=12%  Similarity=0.049  Sum_probs=78.8

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccC--CCCCChhhH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDH--FIHWDDPTQ  403 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~--s~~w~D~~~  403 (570)
                      ...+.+.+|+.+++++++||+|+|+|||+|||+|+.++  |.++|+++++      ++++||+|++.+.  ...++.+..
T Consensus        31 ~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~------~~v~vv~is~d~~~~~~~~~~~~~  104 (185)
T 2gs3_A           31 EFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAE------CGLRILAFPCNQFGKQEPGSNEEI  104 (185)
T ss_dssp             GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTEEEEEEECCTTTTCCCSCHHHH
T ss_pred             CceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhc------CCeEEEEEECcccCCCCCCCHHHH
Confidence            34456789999999999999999999999999999999  9999999973      3699999996210  001122333


Q ss_pred             HHHHHHHcCCCceeecccccc--ChH------HHHHHHHhC---C-----CCCCceEEEECCCCcEEcc
Q 008311          404 KKFETLQSSMPWYTVYHPTLI--DRA------VIRYVKDVW---H-----FKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       404 ~~F~~~~~~MPW~aV~fP~l~--D~~------~~~~L~~~y---~-----V~~IPtlVVLDpqGkVv~~  456 (570)
                      ++|.+ ....+     ||.+.  |..      ..+.+.+.+   +     ++.+|+++|||++|+|+..
T Consensus       105 ~~~~~-~~~~~-----~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~  167 (185)
T 2gs3_A          105 KEFAA-GYNVK-----FDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR  167 (185)
T ss_dssp             HHHHH-HTTCC-----SEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEE
T ss_pred             HHHHH-HcCCC-----CeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEe
Confidence            44432 12333     33332  111      112222221   4     3447999999999999875

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.58  E-value=3.2e-15  Score=142.77  Aligned_cols=108  Identities=13%  Similarity=0.123  Sum_probs=84.0

Q ss_pred             CC--CeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHH
Q 008311          335 TK--RRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETL  409 (570)
Q Consensus       335 ~G--~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~  409 (570)
                      +|  +.+++++++||+|+|+|| |+||++|+.++  |.++|+++++      .+++||+|++ |     +.+..+.|.+.
T Consensus        23 ~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~------~~v~vi~Is~-D-----~~~~~~~~~~~   90 (202)
T 1uul_A           23 NGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD------IGCEVLACSM-D-----SEYSHLAWTSI   90 (202)
T ss_dssp             TSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHT------TTEEEEEEES-S-----CHHHHHHHHHS
T ss_pred             CCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHHHHH
Confidence            57  899999999999999999 99999999999  9999999963      4799999996 3     23344455432


Q ss_pred             H-cCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311          410 Q-SSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       410 ~-~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~  456 (570)
                      . ....+-.++||.+.|.  ...+.+.|++.      ++|+++|||++|+|+..
T Consensus        91 ~~~~~~~~~~~~p~l~D~--~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~  142 (202)
T 1uul_A           91 ERKRGGLGQMNIPILADK--TKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQI  142 (202)
T ss_dssp             CGGGTCCCSCSSCEEECT--TCHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             HHhhCCCCCCceeEEECC--chHHHHHcCCccCCCCceeeEEEEECCCCEEEEE
Confidence            1 1112224556666664  35688899999      99999999999999876

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.57  E-value=3.4e-15  Score=145.47  Aligned_cols=110  Identities=13%  Similarity=0.089  Sum_probs=85.9

Q ss_pred             CCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH-
Q 008311          333 GSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET-  408 (570)
Q Consensus       333 g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~-  408 (570)
                      +.+|+.+++++++||+|+|+|| |+|||+|+.++  |.++|+++++      .+++||+|++ |     +....+.|.+ 
T Consensus        43 ~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~------~~v~vv~Is~-D-----~~~~~~~~~~~  110 (220)
T 1zye_A           43 SGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD------VNCEVVAVSV-D-----SHFSHLAWINT  110 (220)
T ss_dssp             SSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH------TTEEEEEEES-S-----CHHHHHHHHTS
T ss_pred             CCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHHHHHHHHHH
Confidence            5678999999999999999999 99999999999  9999999973      3799999996 2     2333444543 


Q ss_pred             HHcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311          409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~  456 (570)
                      +.....+..++||.+.|.  ...+.+.|++.      ++|+++|||++|+|+..
T Consensus       111 ~~~~~g~~~~~fp~l~D~--~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~  162 (220)
T 1zye_A          111 PRKNGGLGHMNIALLSDL--TKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHL  162 (220)
T ss_dssp             CGGGTCCCSCSSEEEECT--TSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             HHHhCCCcCCceEEEECC--cHHHHHHhCCeecCCCcccceEEEECCCCEEEEE
Confidence            212222224556666664  35688999999      99999999999999875

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.57  E-value=3.3e-15  Score=141.68  Aligned_cols=105  Identities=11%  Similarity=0.098  Sum_probs=81.8

Q ss_pred             CeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCC
Q 008311          337 RRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSM  413 (570)
Q Consensus       337 ~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~M  413 (570)
                      +.+++++++||+|+|+|| |+||++|+.++  |.++|+++++      .+++||+|++ |     ..+..+.|.+...  
T Consensus        36 ~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~------~~v~vv~Vs~-d-----~~~~~~~~~~~~~--  101 (195)
T 2bmx_A           36 TTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFED------RDAQILGVSI-D-----SEFAHFQWRAQHN--  101 (195)
T ss_dssp             EEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHT------TTEEEEEEES-S-----CHHHHHHHHHHCT--
T ss_pred             cEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHHHHHHHHHHhc--
Confidence            899999999999999999 99999999999  9999999963      4799999996 3     2334455543221  


Q ss_pred             CceeeccccccChHHHHHHHHhCCCC-----CCceEEEECCCCcEEccc
Q 008311          414 PWYTVYHPTLIDRAVIRYVKDVWHFK-----NKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       414 PW~aV~fP~l~D~~~~~~L~~~y~V~-----~IPtlVVLDpqGkVv~~n  457 (570)
                      .+..++||.+.|.  ...+.+.|++.     ++|+++|||++|+|+...
T Consensus       102 ~~~~~~~~~~~d~--~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~  148 (195)
T 2bmx_A          102 DLKTLPFPMLSDI--KRELSQAAGVLNADGVADRVTFIVDPNNEIQFVS  148 (195)
T ss_dssp             TGGGCCSCEEECT--TSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEE
T ss_pred             cccCCceeEEeCC--chHHHHHhCCcccCCCccceEEEEcCCCeEEEEE
Confidence            1113445555564  35678899999     999999999999998763

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.57  E-value=4.5e-15  Score=139.42  Aligned_cols=109  Identities=13%  Similarity=0.086  Sum_probs=84.4

Q ss_pred             cccCCCCC----eeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhh
Q 008311          330 LVDGSTKR----RVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPT  402 (570)
Q Consensus       330 l~~g~~G~----~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~  402 (570)
                      .+.+.+|+    .+++++++||+|+|+|| |+||++|+.++  |.++|+++++      .+++||+|++ |     ..+.
T Consensus        11 ~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~------~~v~vv~vs~-d-----~~~~   78 (187)
T 1we0_A           11 RAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKK------LGVEVYSVST-D-----THFV   78 (187)
T ss_dssp             EEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHH------TTEEEEEEES-S-----CHHH
T ss_pred             EEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHH------cCCEEEEEEC-C-----CHHH
Confidence            34556777    99999999999999999 99999999999  9999999973      3799999996 3     2334


Q ss_pred             HHHHHHHHc---CCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEccc
Q 008311          403 QKKFETLQS---SMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       403 ~~~F~~~~~---~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~n  457 (570)
                      .+.|.+...   .++     ||.+.|.  ...+.+.|++.      ++|+++|||++|+|+...
T Consensus        79 ~~~~~~~~~~~~~~~-----~~~~~d~--~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~  135 (187)
T 1we0_A           79 HKAWHENSPAVGSIE-----YIMIGDP--SQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIE  135 (187)
T ss_dssp             HHHHHHSCHHHHTCC-----SEEEECT--TCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHhccccCCC-----ceEEECC--chHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEE
Confidence            445543221   344     4444453  24678899998      999999999999998763

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.56  E-value=4e-15  Score=137.44  Aligned_cols=110  Identities=16%  Similarity=0.092  Sum_probs=83.3

Q ss_pred             CCCcccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhH
Q 008311          327 LQPLVDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQ  403 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~  403 (570)
                      +...+.+.+|+.+++++++||+|+|+|| ++||++|+.++  |.++|++ +        +++||+||. |     +.+..
T Consensus        27 P~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~--------~~~vv~is~-d-----~~~~~   91 (166)
T 3p7x_A           27 PDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK-E--------EGIVLTISA-D-----LPFAQ   91 (166)
T ss_dssp             CCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-T--------TSEEEEEES-S-----CHHHH
T ss_pred             CCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc-C--------CCEEEEEEC-C-----CHHHH
Confidence            3344668899999999999999999999 78999999999  8888865 2        699999995 3     34455


Q ss_pred             HHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCC------CceEEEECCCCcEEccc
Q 008311          404 KKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKN------KPILVVLDPQGRVVSPN  457 (570)
Q Consensus       404 ~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~------IPtlVVLDpqGkVv~~n  457 (570)
                      ++|.+. ..++    +||.+.|. ....+.+.|++..      .|+++|||++|+|+...
T Consensus        92 ~~~~~~-~~~~----~~~~l~D~-~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~  145 (166)
T 3p7x_A           92 KRWCAS-AGLD----NVITLSDH-RDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKE  145 (166)
T ss_dssp             HHHHHH-HTCS----SCEEEECT-TTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEE
T ss_pred             HHHHHH-cCCC----ceEEccCC-chhHHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence            666542 2331    34444454 0236788899985      89999999999998763

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.56  E-value=3.3e-15  Score=141.10  Aligned_cols=113  Identities=16%  Similarity=0.122  Sum_probs=85.7

Q ss_pred             ccCC--CC--Ceeecccc-CCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhh
Q 008311          331 VDGS--TK--RRVNIEVL-RRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPT  402 (570)
Q Consensus       331 ~~g~--~G--~~Vsls~L-kGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~  402 (570)
                      +.+.  +|  +.++++++ +||+|+|+|| |+||++|+.++  |.++|+++++      .+++||+|++ |     +.+.
T Consensus        11 l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~------~~v~vv~Is~-d-----~~~~   78 (192)
T 2h01_A           11 AEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE------RNVELLGCSV-D-----SKFT   78 (192)
T ss_dssp             EEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH------TTEEEEEEES-S-----CHHH
T ss_pred             eEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEe-C-----CHHH
Confidence            4455  78  89999999 9999999999 99999999999  9999999963      4799999996 3     2333


Q ss_pred             HHHHHHHH-cCCCceeeccccccChHHHHHHHHhCCCC-----CCceEEEECCCCcEEccc
Q 008311          403 QKKFETLQ-SSMPWYTVYHPTLIDRAVIRYVKDVWHFK-----NKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       403 ~~~F~~~~-~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-----~IPtlVVLDpqGkVv~~n  457 (570)
                      .+.|.+.. ....+..++||.+.|.  ...+.+.|++.     .+|+++|||++|+|+...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~l~D~--~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~  137 (192)
T 2h01_A           79 HLAWKKTPLSQGGIGNIKHTLISDI--SKSIARSYDVLFNESVALRAFVLIDKQGVVQHLL  137 (192)
T ss_dssp             HHHHHTSCGGGTCCCSCSSEEEECT--TSHHHHHTTCEETTTEECCEEEEECTTSBEEEEE
T ss_pred             HHHHHHhHHhhCCccCCCcCeEECC--cHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEE
Confidence            44443321 1112223455656664  35688999999     899999999999998763

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.56  E-value=2e-14  Score=138.49  Aligned_cols=170  Identities=14%  Similarity=0.115  Sum_probs=113.7

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      .+||+|+|+|||+||+||+.+.  |.++++++++    .+.++.++.|..        +..                   
T Consensus        30 ~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~~~~~vd~--------~~~-------------------   78 (241)
T 3idv_A           30 ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKD----KDPPIPVAKIDA--------TSA-------------------   78 (241)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHT----SSSCCCEEEEET--------TTC-------------------
T ss_pred             hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhh----cCCceEEEEEec--------cCC-------------------
Confidence            4789999999999999999999  9999999963    123466776653        111                   


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhh---cCcc--ccccccCCC
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKE---ETWR--LELLVDGID  496 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e---~~w~--~~ll~d~~d  496 (570)
                              ..+.++|+|+++|++++++ +|+++...+.            .+.....+...+   ..|.  ...+..-.+
T Consensus        79 --------~~l~~~~~v~~~Pt~~~~~-~g~~~~~~g~------------~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~  137 (241)
T 3idv_A           79 --------SVLASRFDVSGYPTIKILK-KGQAVDYEGS------------RTQEEIVAKVREVSQPDWTPPPEVTLVLTK  137 (241)
T ss_dssp             --------HHHHHHTTCCSSSEEEEEE-TTEEEECCSC------------SCHHHHHHHHHHHHSTTCCCCCCSSEECCT
T ss_pred             --------HHHHHhcCCCcCCEEEEEc-CCCcccccCc------------ccHHHHHHHHhhccCcccccccccceeccH
Confidence                    1367789999999999996 6776643221            122222222211   0111  001111011


Q ss_pred             ccccccccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC---CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          497 PLVLDWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA---RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       497 ~~i~~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~---~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ......+.+++.+.++|.+. |++|+.|.+.+.+++++.   +.++.++.|..+... .+.+.+++..+||+++
T Consensus       138 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~  210 (241)
T 3idv_A          138 ENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAET-DLAKRFDVSGYPTLKI  210 (241)
T ss_dssp             TTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCH-HHHHHTTCCSSSEEEE
T ss_pred             HHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCH-HHHHHcCCcccCEEEE
Confidence            12222346788999999998 999999999999998652   445888888877654 4667778889999876

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.56  E-value=9.2e-15  Score=133.53  Aligned_cols=118  Identities=13%  Similarity=0.235  Sum_probs=83.3

Q ss_pred             CCCcccCCCCCeeeccccCCCEEEEEEecCCCHH-hHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhH
Q 008311          327 LQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQ-EELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQ  403 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpP-Cr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~  403 (570)
                      +...+.+.+| .+++++++||+|+|+|||+||+| |+.++  |.++|+++++.   +.++++||+|++ |...+ +.+..
T Consensus        17 p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~---~~~~v~vv~is~-d~~~d-~~~~~   90 (172)
T 2k6v_A           17 VDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPK---AQERVQVIFVSV-DPERD-PPEVA   90 (172)
T ss_dssp             CCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHH---HHTTEEEEEEES-CTTTC-CHHHH
T ss_pred             CCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhh---ccCCEEEEEEEE-CCCCC-CHHHH
Confidence            3445677899 99999999999999999999998 99999  99999998631   113799999997 32100 12334


Q ss_pred             HHHHHHHcCCCceeeccccccChH-HHHHHHHhCC---------------CCCCceEEEECCCCcEEccc
Q 008311          404 KKFETLQSSMPWYTVYHPTLIDRA-VIRYVKDVWH---------------FKNKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       404 ~~F~~~~~~MPW~aV~fP~l~D~~-~~~~L~~~y~---------------V~~IPtlVVLDpqGkVv~~n  457 (570)
                      +.|.+. ...+|..+.     |.. ....+.+.|+               +.++|+++|+| +|+|+...
T Consensus        91 ~~~~~~-~~~~~~~l~-----d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~  153 (172)
T 2k6v_A           91 DRYAKA-FHPSFLGLS-----GSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLY  153 (172)
T ss_dssp             HHHHHH-HCTTEEEEC-----CCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEE
T ss_pred             HHHHHH-hCCCcEEEe-----CCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEE
Confidence            445432 234554433     432 2345666666               46899999999 99998753

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.55  E-value=2.7e-14  Score=133.64  Aligned_cols=121  Identities=10%  Similarity=0.110  Sum_probs=82.3

Q ss_pred             CCCcccCCCCCeeeccccCCCEEEEEEecCCCH-HhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhH
Q 008311          327 LQPLVDGSTKRRVNIEVLRRKNVLLLISDLDIS-QEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQ  403 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCp-PCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~  403 (570)
                      +...+.+.+|+.+++++|+||+|+|+||++||| +|..++  |.++++.+++    .+.++++|+||+ |...+ +.+..
T Consensus        13 PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~----~~~~v~~v~isv-Dp~~D-tp~~l   86 (170)
T 4hde_A           13 ETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKE----EKLDVQFVSFSV-DPDLD-KPENL   86 (170)
T ss_dssp             CCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHH----TTCCCEEEEEES-CTTTC-CHHHH
T ss_pred             CCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhc----ccccceeEeeec-Ccccc-cHHHH
Confidence            344567899999999999999999999999997 899999  9999999974    256899999997 42100 12233


Q ss_pred             HHHHHHHc--CCCceeeccccccChH-HHHHHHHhCC----------CCCCceEEEECCCCcEEcc
Q 008311          404 KKFETLQS--SMPWYTVYHPTLIDRA-VIRYVKDVWH----------FKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       404 ~~F~~~~~--~MPW~aV~fP~l~D~~-~~~~L~~~y~----------V~~IPtlVVLDpqGkVv~~  456 (570)
                      ++|.+.+.  ...|..+..+   +.+ ..+.....|+          +..-|+++|||++|+|+..
T Consensus        87 ~~y~~~~~~~~~~~~~ltg~---~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~  149 (170)
T 4hde_A           87 KAFIQKFTEDTSNWNLLTGY---SLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKK  149 (170)
T ss_dssp             HHHHTTTCSCCTTEEEEBCS---CHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEE
T ss_pred             HHHHHHcCCCCCCceecCcc---cHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEE
Confidence            44543221  2246555432   212 2223333333          3345799999999999853

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.54  E-value=3.3e-15  Score=138.06  Aligned_cols=108  Identities=18%  Similarity=0.134  Sum_probs=81.0

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ..+.+.+|+.+++++++||+|+|+|| ++||++|+.++  |.++|+++ .       +++||+||+ |     +.+..++
T Consensus        26 f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~-------~v~vv~Is~-d-----~~~~~~~   91 (165)
T 1q98_A           26 FILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-S-------NTIVLCISA-D-----LPFAQAR   91 (165)
T ss_dssp             CEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-T-------TEEEEEEES-S-----CHHHHTT
T ss_pred             eEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-C-------CCEEEEEeC-C-----CHHHHHH
Confidence            34568899999999999999999999 89999999999  99999987 2       599999996 2     2222223


Q ss_pred             HHHHHcCCCceee-ccccccChHHHHHHHHhCCCCC---------CceEEEECCCCcEEccc
Q 008311          406 FETLQSSMPWYTV-YHPTLIDRAVIRYVKDVWHFKN---------KPILVVLDPQGRVVSPN  457 (570)
Q Consensus       406 F~~~~~~MPW~aV-~fP~l~D~~~~~~L~~~y~V~~---------IPtlVVLDpqGkVv~~n  457 (570)
                      |   ..+.   .+ +||.+.|. ....+.+.|++..         .|+++|||++|+|+...
T Consensus        92 ~---~~~~---~~~~~~~l~D~-~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~  146 (165)
T 1q98_A           92 F---CGAE---GIENAKTVSTF-RNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQ  146 (165)
T ss_dssp             C---TTTT---TCTTEEEEECT-TCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             H---HHHc---CCCceEEeecc-ccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEE
Confidence            3   2222   23 34545563 1246788898853         59999999999998764

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.54  E-value=1e-14  Score=152.94  Aligned_cols=111  Identities=14%  Similarity=0.123  Sum_probs=83.9

Q ss_pred             cCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHH
Q 008311          332 DGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETL  409 (570)
Q Consensus       332 ~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~  409 (570)
                      .+.+|+.+++++++||+|+|+|||+||++|+.++  |.++|+++++      .+++||.|++.+..   .+.+.+.++++
T Consensus        68 ~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~------~~v~vi~Vs~d~~~---~~d~~~~~~~~  138 (352)
T 2hyx_A           68 NTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKD------SGLAVIGVHTPEYA---FEKVPGNVAKG  138 (352)
T ss_dssp             SSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG------GTEEEEEEECCSSG---GGGCHHHHHHH
T ss_pred             CCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhc------CCeEEEEEECCccc---ccCCHHHHHHH
Confidence            3678999999999999999999999999999999  9999999963      36999999862100   01233344443


Q ss_pred             HcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          410 QSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       410 ~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      ..+.   .++||.+.|.  ...+.+.|++.++|+++|||++|+|+..
T Consensus       139 ~~~~---~l~fpv~~D~--~~~l~~~ygV~~~Pt~~lID~~G~Iv~~  180 (352)
T 2hyx_A          139 AANL---GISYPIALDN--NYATWTNYRNRYWPAEYLIDATGTVRHI  180 (352)
T ss_dssp             HHHH---TCCSCEEECT--TSHHHHHTTCCEESEEEEECTTSBEEEE
T ss_pred             HHHc---CCCccEEeCC--cHHHHHHcCCCccCEEEEEeCCCeEEEE
Confidence            3322   2345555564  2467889999999999999999999875

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.54  E-value=1.6e-14  Score=133.49  Aligned_cols=111  Identities=12%  Similarity=0.111  Sum_probs=84.3

Q ss_pred             CCCccc----CCCC--Ceeeccc-cCCCEEEEEEe-cCCCHHhH-HHH--HHHHHHHHhhhhhccCCCeE-EEEEecccC
Q 008311          327 LQPLVD----GSTK--RRVNIEV-LRRKNVLLLIS-DLDISQEE-LSI--LEQIYNESRLHLTRQESHYE-VVWIPIVDH  394 (570)
Q Consensus       327 ~~pl~~----g~~G--~~Vsls~-LkGKvVlL~Fw-AsWCpPCr-~e~--L~~iY~elk~~~~k~~~~fE-IV~IsIvD~  394 (570)
                      ..|.|.    +.+|  +++++++ ++||+|+|+|| |+|||+|+ .++  |.++|+++++      .+++ ||+||. | 
T Consensus         9 ~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~------~~v~~vv~Is~-d-   80 (162)
T 1tp9_A            9 VLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKS------KGVTEILCISV-N-   80 (162)
T ss_dssp             BCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHH------TTCCCEEEEES-S-
T ss_pred             CCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH------CCCCEEEEEEC-C-
Confidence            455543    6789  9999999 99999999999 89999999 899  9999999973      3799 999996 3 


Q ss_pred             CCCCChhhHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCC------C-----CceEEEECCCCcEEcc
Q 008311          395 FIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------N-----KPILVVLDPQGRVVSP  456 (570)
Q Consensus       395 s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~-----IPtlVVLDpqGkVv~~  456 (570)
                          +.+..++|.+. ...  -. +||.+.|..  ..+.+.||+.      |     +|+++||| +|+|+..
T Consensus        81 ----~~~~~~~~~~~-~~~--~~-~~~~l~D~~--~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~  142 (162)
T 1tp9_A           81 ----DPFVMKAWAKS-YPE--NK-HVKFLADGS--ATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAA  142 (162)
T ss_dssp             ----CHHHHHHHHHT-CTT--CS-SEEEEECTT--SHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEE
T ss_pred             ----CHHHHHHHHHh-cCC--CC-CeEEEECCC--chHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEE
Confidence                23344555431 122  11 455566753  5688899986      3     89999999 9999876

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.53  E-value=1e-14  Score=135.08  Aligned_cols=106  Identities=15%  Similarity=0.161  Sum_probs=79.9

Q ss_pred             cccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          330 LVDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       330 l~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      .+.+.+|+.+++++++||+|+|+|| ++|||+|+.++  |.++|+++ .       +++||+|++ |     +.+..++|
T Consensus        31 ~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~-------~v~vv~Is~-d-----~~~~~~~~   96 (171)
T 2yzh_A           31 VVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM-E-------GVDVTVVSM-D-----LPFAQKRF   96 (171)
T ss_dssp             EEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T-------TEEEEEEES-S-----CHHHHHHH
T ss_pred             EEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-C-------CceEEEEeC-C-----CHHHHHHH
Confidence            4567899999999999999999999 89999999999  99998877 2       699999996 3     23344555


Q ss_pred             HHHHcCCCceeeccccccC-hHHHHHHHHhCCCC-------C--CceEEEECCCCcEEccc
Q 008311          407 ETLQSSMPWYTVYHPTLID-RAVIRYVKDVWHFK-------N--KPILVVLDPQGRVVSPN  457 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D-~~~~~~L~~~y~V~-------~--IPtlVVLDpqGkVv~~n  457 (570)
                      .+. ...+    +||.+.| .  ...+ +.|++.       +  .|+++|||++|+|+...
T Consensus        97 ~~~-~~~~----~~~~l~D~~--~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~  149 (171)
T 2yzh_A           97 CES-FNIQ----NVTVASDFR--YRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQ  149 (171)
T ss_dssp             HHH-TTCC----SSEEEECTT--TCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             HHH-cCCC----CeEEeecCc--cCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEE
Confidence            442 2330    3444446 3  2346 889885       2  69999999999998763

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.53  E-value=1.3e-14  Score=140.93  Aligned_cols=113  Identities=16%  Similarity=0.127  Sum_probs=84.9

Q ss_pred             cccCC--CC--Ceeecccc-CCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChh
Q 008311          330 LVDGS--TK--RRVNIEVL-RRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDP  401 (570)
Q Consensus       330 l~~g~--~G--~~Vsls~L-kGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~  401 (570)
                      .+.+.  +|  +.++++++ +||+|+|+|| |+||++|+.++  |.++|+++++      .+++||+|++ |     +.+
T Consensus        31 ~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~------~~v~vv~Is~-D-----~~~   98 (213)
T 2i81_A           31 KAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHE------RNVELLGCSV-D-----SKY   98 (213)
T ss_dssp             EEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHH------TTEEEEEEES-S-----CHH
T ss_pred             EeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHH
Confidence            34455  78  89999999 9999999999 99999999999  9999999973      4799999996 3     233


Q ss_pred             hHHHHHHHHcCC-CceeeccccccChHHHHHHHHhCCCC-----CCceEEEECCCCcEEcc
Q 008311          402 TQKKFETLQSSM-PWYTVYHPTLIDRAVIRYVKDVWHFK-----NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       402 ~~~~F~~~~~~M-PW~aV~fP~l~D~~~~~~L~~~y~V~-----~IPtlVVLDpqGkVv~~  456 (570)
                      ..+.|.+..... .--.++||.+.|.  ...+.+.|++.     .+|+++|||++|+|+..
T Consensus        99 ~~~~~~~~~~~~~g~~~~~fp~l~D~--~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~  157 (213)
T 2i81_A           99 THLAWKKTPLAKGGIGNIKHTLLSDI--TKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHL  157 (213)
T ss_dssp             HHHHHHSSCGGGTCCCSCSSEEEECT--TSHHHHHTTCEETTTEECEEEEEECTTSBEEEE
T ss_pred             HHHHHHHHHHhhCCccCCCceEEECC--chHHHHHhCCccccCCcccEEEEECCCCEEEEE
Confidence            344443321100 0002345555564  35688999999     89999999999999876

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.53  E-value=1.2e-14  Score=132.96  Aligned_cols=107  Identities=14%  Similarity=0.172  Sum_probs=82.7

Q ss_pred             CcccCCCCCeeeccccCCC--EEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhH
Q 008311          329 PLVDGSTKRRVNIEVLRRK--NVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQ  403 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGK--vVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~  403 (570)
                      ..+.+.+|+.+++++++||  +|+|+|| |+|||+|+.++  |.++|+++++      .+ +||+|+. |     +.+..
T Consensus        16 f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~------~~-~vv~is~-d-----~~~~~   82 (159)
T 2a4v_A           16 LSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE------YA-AVFGLSA-D-----SVTSQ   82 (159)
T ss_dssp             CEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT------TC-EEEEEES-C-----CHHHH
T ss_pred             eEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHh------CC-cEEEEeC-C-----CHHHH
Confidence            4456789999999999997  8999987 99999999999  9999999963      35 9999996 2     23344


Q ss_pred             HHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCc------eEEEECCCCcEEccc
Q 008311          404 KKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKP------ILVVLDPQGRVVSPN  457 (570)
Q Consensus       404 ~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IP------tlVVLDpqGkVv~~n  457 (570)
                      +.|.+. ..+     +||.+.|.  ...+.+.|++...|      +++|| ++|+|+...
T Consensus        83 ~~~~~~-~~~-----~~~~l~D~--~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~  133 (159)
T 2a4v_A           83 KKFQSK-QNL-----PYHLLSDP--KREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKR  133 (159)
T ss_dssp             HHHHHH-HTC-----SSEEEECT--TCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEE
T ss_pred             HHHHHH-hCC-----CceEEECC--ccHHHHHhCCcccccCCccceEEEE-cCCEEEEEE
Confidence            555442 233     34555564  34678899999988      89999 999998763

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.52  E-value=3.1e-14  Score=127.74  Aligned_cols=109  Identities=15%  Similarity=0.125  Sum_probs=79.7

Q ss_pred             CCCcccCCCC--------CeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCC
Q 008311          327 LQPLVDGSTK--------RRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFI  396 (570)
Q Consensus       327 ~~pl~~g~~G--------~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~  396 (570)
                      +...+.+.+|        +.+++++++||+|+|+||++||++|+.++  |.+++++         .++++++|++.+   
T Consensus        15 p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~---------~~v~~v~v~~~~---   82 (156)
T 1kng_A           15 PQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD---------KRFQLVGINYKD---   82 (156)
T ss_dssp             CCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC---------TTSEEEEEEESC---
T ss_pred             CCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc---------CCeEEEEEECCC---
Confidence            3344556777        89999999999999999999999999988  7776643         259999999622   


Q ss_pred             CCChhhHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          397 HWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       397 ~w~D~~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                        +.+..+.|.+. ..++|..+.    .|.  ...+.+.|++.++|+++++|++|+++..
T Consensus        83 --~~~~~~~~~~~-~~~~~~~~~----~d~--~~~~~~~~~v~~~P~~~~id~~G~i~~~  133 (156)
T 1kng_A           83 --AADNARRFLGR-YGNPFGRVG----VDA--NGRASIEWGVYGVPETFVVGREGTIVYK  133 (156)
T ss_dssp             --CHHHHHHHHHH-HCCCCSEEE----EET--TSHHHHHTTCCSSCEEEEECTTSBEEEE
T ss_pred             --CHHHHHHHHHH-cCCCCceee----eCc--hhHHHHhcCcCccCeEEEEcCCCCEEEE
Confidence              23334444332 234544222    243  3468889999999999999999999864

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.52  E-value=2.1e-14  Score=134.55  Aligned_cols=109  Identities=12%  Similarity=0.033  Sum_probs=82.8

Q ss_pred             Cccc-CCCCCeeecccc-CCCEEEEEEe-cCCCHHhHH-HH--HHHHHHHHhhhhhccCCCe-EEEEEecccCCCCCChh
Q 008311          329 PLVD-GSTKRRVNIEVL-RRKNVLLLIS-DLDISQEEL-SI--LEQIYNESRLHLTRQESHY-EVVWIPIVDHFIHWDDP  401 (570)
Q Consensus       329 pl~~-g~~G~~Vsls~L-kGKvVlL~Fw-AsWCpPCr~-e~--L~~iY~elk~~~~k~~~~f-EIV~IsIvD~s~~w~D~  401 (570)
                      ..+. +.+|++++++++ +||+|+|+|| |+|||+|+. ++  |.++|+++++      .++ +||+||. |     +..
T Consensus        12 f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~------~gv~~vv~Is~-d-----~~~   79 (167)
T 2wfc_A           12 VTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHG------KGVDIIACMAV-N-----DSF   79 (167)
T ss_dssp             CEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHH------TTCCEEEEEES-S-----CHH
T ss_pred             cEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH------CCCCEEEEEeC-C-----CHH
Confidence            3455 778999999998 9999988885 999999999 99  9999999973      479 9999996 3     233


Q ss_pred             hHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCC-----------CceEEEECCCCcEEcc
Q 008311          402 TQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKN-----------KPILVVLDPQGRVVSP  456 (570)
Q Consensus       402 ~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~-----------IPtlVVLDpqGkVv~~  456 (570)
                      ..+.|.+- ..++.   .||.+.|.  ...+.+.|++..           .|+++|| ++|+|+..
T Consensus        80 ~~~~~~~~-~~~~~---~fp~l~D~--~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~  138 (167)
T 2wfc_A           80 VMDAWGKA-HGADD---KVQMLADP--GGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKV  138 (167)
T ss_dssp             HHHHHHHH-TTCTT---TSEEEECT--TSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEE
T ss_pred             HHHHHHHh-cCCCc---ceEEEECC--CCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEE
Confidence            44555442 23330   15556675  346888899864           3999999 99999876

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.52  E-value=8.2e-15  Score=146.93  Aligned_cols=116  Identities=15%  Similarity=0.082  Sum_probs=87.1

Q ss_pred             CCCccc-----CCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCC
Q 008311          327 LQPLVD-----GSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHW  398 (570)
Q Consensus       327 ~~pl~~-----g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w  398 (570)
                      ++|.|.     +.+|+.+++++++||+|+|+|| ++||++|..++  |.++|+++++      .+++||+||+ |     
T Consensus        67 ~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~------~gv~vv~IS~-D-----  134 (254)
T 3tjj_A           67 PAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS------INTEVVACSV-D-----  134 (254)
T ss_dssp             BCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHT------TTEEEEEEES-S-----
T ss_pred             CCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH------cCCEEEEEcC-C-----
Confidence            455554     5578899999999999999999 99999999999  9999999973      4799999996 3     


Q ss_pred             ChhhHHHHHHHH-cCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311          399 DDPTQKKFETLQ-SSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       399 ~D~~~~~F~~~~-~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~  456 (570)
                      +......|.+.. ....-..++||.+.|..  ..+.+.|++.      .+|+++|||++|+|+..
T Consensus       135 ~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~--~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~  197 (254)
T 3tjj_A          135 SQFTHLAWINTPRRQGGLGPIRIPLLSDLT--HQISKDYGVYLEDSGHTLRGLFIIDDKGILRQI  197 (254)
T ss_dssp             CHHHHHHHHTSCGGGTSCCSCSSCEEECTT--SHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCcccccceeeCcH--HHHHHHcCCccccCCCccceEEEECCCCeEEEE
Confidence            234445554321 11000034566666753  5688899985      58999999999999876

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.52  E-value=7.1e-15  Score=134.95  Aligned_cols=109  Identities=15%  Similarity=0.046  Sum_probs=81.5

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCC-CHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLD-ISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsW-CpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ...+.+.+|+.+++++++||+|+|+||++| |++|+.++  |.++|+++ .       +++||+|++ |     +.+..+
T Consensus        26 ~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~-------~~~vv~is~-d-----~~~~~~   91 (167)
T 2jsy_A           26 DFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-G-------DVNVYTISA-D-----LPFAQA   91 (167)
T ss_dssp             CCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-S-------SCEEEEEEC-S-----SGGGTS
T ss_pred             ceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-C-------CCEEEEEEC-C-----CHHHHH
Confidence            344568899999999999999999999999 99999999  99999988 2       599999996 3     122222


Q ss_pred             HHHHHHcCCCceeeccccccC-hHHHHHHHHhCCCCC------CceEEEECCCCcEEccc
Q 008311          405 KFETLQSSMPWYTVYHPTLID-RAVIRYVKDVWHFKN------KPILVVLDPQGRVVSPN  457 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D-~~~~~~L~~~y~V~~------IPtlVVLDpqGkVv~~n  457 (570)
                      .|.   .+..+.  +||.+.| .  ...+.+.|++..      .|+++|||++|+|+...
T Consensus        92 ~~~---~~~~~~--~~~~~~d~~--~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~  144 (167)
T 2jsy_A           92 RWC---GANGID--KVETLSDHR--DMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAE  144 (167)
T ss_dssp             CCG---GGSSCT--TEEEEEGGG--TCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEE
T ss_pred             HHH---HhcCCC--CceEeeCCc--hhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEE
Confidence            332   222211  3444445 3  245788899987      39999999999998764

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.50  E-value=1.4e-14  Score=139.22  Aligned_cols=108  Identities=20%  Similarity=0.148  Sum_probs=81.6

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ..+.+.+|+.+++++++||+|+|+|| ++||++|+.++  |.++|++++        +++||+||. |     +.+..++
T Consensus        61 f~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~~--------~v~vv~Is~-D-----~~~~~~~  126 (200)
T 3zrd_A           61 FTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELE--------NTVVLCISS-D-----LPFAQSR  126 (200)
T ss_dssp             CEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTST--------TEEEEEEES-S-----CHHHHTT
T ss_pred             eEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHhC--------CCEEEEEEC-C-----CHHHHHH
Confidence            44568899999999999999999999 67999999999  999999872        599999995 2     2222233


Q ss_pred             HHHHHcCCCceee-ccccccChHHHHHHHHhCCCC-------C--CceEEEECCCCcEEccc
Q 008311          406 FETLQSSMPWYTV-YHPTLIDRAVIRYVKDVWHFK-------N--KPILVVLDPQGRVVSPN  457 (570)
Q Consensus       406 F~~~~~~MPW~aV-~fP~l~D~~~~~~L~~~y~V~-------~--IPtlVVLDpqGkVv~~n  457 (570)
                      |   ..+   +.+ +||.+.|.. ...+.+.|++.       +  .|+++|||++|+|+...
T Consensus       127 ~---~~~---~~~~~f~~l~D~~-~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~  181 (200)
T 3zrd_A          127 F---CGA---EGLSNVITLSTLR-GADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSE  181 (200)
T ss_dssp             C---TTT---TTCTTEEEEETTS-CTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             H---HHH---cCCCCceEEecCc-hHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEE
Confidence            3   222   233 455555641 34678889885       3  59999999999998764

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.50  E-value=1.5e-14  Score=135.05  Aligned_cols=106  Identities=16%  Similarity=0.100  Sum_probs=79.8

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCC-CHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLD-ISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsW-CpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ..+.+.+|+.+++++++||+|+|+||++| |++|+.++  |.++|++ +        +++||+|++ |     +.+..++
T Consensus        27 f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~--------~v~vv~Is~-D-----~~~~~~~   91 (175)
T 1xvq_A           27 FTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA-S--------GATVLCVSK-D-----LPFAQKR   91 (175)
T ss_dssp             CEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH-T--------TCEEEEEES-S-----CHHHHTT
T ss_pred             eEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh-c--------CCEEEEEEC-C-----CHHHHHH
Confidence            34567899999999999999999999999 99999999  9999987 3        589999996 3     2222233


Q ss_pred             HHHHHcCCCceee-ccccccChHHHHHHHHhCCCCCC---------ceEEEECCCCcEEccc
Q 008311          406 FETLQSSMPWYTV-YHPTLIDRAVIRYVKDVWHFKNK---------PILVVLDPQGRVVSPN  457 (570)
Q Consensus       406 F~~~~~~MPW~aV-~fP~l~D~~~~~~L~~~y~V~~I---------PtlVVLDpqGkVv~~n  457 (570)
                      |.   .+.   .+ +||.+.|..  ..+.+.|++...         |+++|||++|+|+...
T Consensus        92 ~~---~~~---~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~  145 (175)
T 1xvq_A           92 FC---GAE---GTENVMPASAFR--DSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTE  145 (175)
T ss_dssp             CC------------CEEEEECTT--SSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEE
T ss_pred             HH---HHc---CCCCceEeeCCH--HHHHHHhCCcccccccCCcccceEEEECCCCeEEEEE
Confidence            32   221   22 344455642  467888999887         9999999999998763

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.49  E-value=8e-14  Score=127.53  Aligned_cols=106  Identities=17%  Similarity=0.087  Sum_probs=77.2

Q ss_pred             CcccCC--CCCeeecccc-CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhH
Q 008311          329 PLVDGS--TKRRVNIEVL-RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQ  403 (570)
Q Consensus       329 pl~~g~--~G~~Vsls~L-kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~  403 (570)
                      ..+.+.  +|+.++++++ +||+|+|+|||+|||+|+.++  |.+++++          +++|++|++.+     +.+..
T Consensus        31 f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----------~v~vv~v~~~~-----~~~~~   95 (168)
T 2b1k_A           31 FRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----------GIRVVGMNYKD-----DRQKA   95 (168)
T ss_dssp             CEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----------TCCEEEEEESC-----CHHHH
T ss_pred             eEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC----------CCEEEEEECCC-----ChHHH
Confidence            344566  8999999885 999999999999999999988  7776642          58899999722     23334


Q ss_pred             HHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          404 KKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       404 ~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      ..|.+. ...+|..+    +.|.  ...+.+.|++.++|+++++|++|+++..
T Consensus        96 ~~~~~~-~~~~~~~~----~~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  141 (168)
T 2b1k_A           96 ISWLKE-LGNPYALS----LFDG--DGMLGLDLGVYGAPETFLIDGNGIIRYR  141 (168)
T ss_dssp             HHHHHH-HCCCCSEE----EEET--TCHHHHHHTCCSSSEEEEECTTSBEEEE
T ss_pred             HHHHHH-cCCCCcee----eECc--chHHHHHcCccccCEEEEECCCCeEEEE
Confidence            444332 23444321    1233  2457889999999999999999999864

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.48  E-value=5.2e-14  Score=134.45  Aligned_cols=130  Identities=14%  Similarity=0.074  Sum_probs=90.8

Q ss_pred             CCCcc--cCC--CC-Ceeeccc-cCCC-EEEEEEecCCCHHhHH-HH--HHHHHHHHhhhhhccCCCeE-EEEEecccCC
Q 008311          327 LQPLV--DGS--TK-RRVNIEV-LRRK-NVLLLISDLDISQEEL-SI--LEQIYNESRLHLTRQESHYE-VVWIPIVDHF  395 (570)
Q Consensus       327 ~~pl~--~g~--~G-~~Vsls~-LkGK-vVlL~FwAsWCpPCr~-e~--L~~iY~elk~~~~k~~~~fE-IV~IsIvD~s  395 (570)
                      ..|.|  .+.  +| +.+++++ ++|| +|+++|||+|||+|+. ++  |+++|+++++      .+++ ||+||. |  
T Consensus        31 ~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~------~gv~~vv~Is~-d--  101 (184)
T 3uma_A           31 KLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILA------RGVDDIAVVAV-N--  101 (184)
T ss_dssp             BCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHT------TTCCEEEEEES-S--
T ss_pred             CCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHH------cCCCEEEEEEC-C--
Confidence            34444  455  78 9999999 8999 5566788999999999 88  9999999973      4788 999996 2  


Q ss_pred             CCCChhhHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCC-----------CCceEEEECCCCcEEccccchhHhh
Q 008311          396 IHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-----------NKPILVVLDPQGRVVSPNALHMMWI  464 (570)
Q Consensus       396 ~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-----------~IPtlVVLDpqGkVv~~na~~~I~~  464 (570)
                         +....++|.+- ...|   -.||.+.|..  ..+.+.||+.           ..|.++||| +|+|+....      
T Consensus       102 ---~~~~~~~f~~~-~~~~---~~fp~l~D~~--~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~------  165 (184)
T 3uma_A          102 ---DLHVMGAWATH-SGGM---GKIHFLSDWN--AAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNI------  165 (184)
T ss_dssp             ---CHHHHHHHHHH-HTCT---TTSEEEECTT--CHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEE------
T ss_pred             ---CHHHHHHHHHH-hCCC---CceEEEEcCc--hHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEE------
Confidence               23345566542 2223   0166666753  5688899985           358899996 999987532      


Q ss_pred             hcCCCCCCCchhHHHHhh
Q 008311          465 WGSNAFPFTSLREEALWK  482 (570)
Q Consensus       465 ~G~~aFPFt~~~~e~L~~  482 (570)
                       |.+.=+++.+..+++++
T Consensus       166 -~~~~g~~~~~~~~~vL~  182 (184)
T 3uma_A          166 -EESPGQATASGAAAMLE  182 (184)
T ss_dssp             -CSSTTCCSTTSHHHHHH
T ss_pred             -eCCCCCCcCCCHHHHHh
Confidence             22223566666666654

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.48  E-value=4.8e-14  Score=133.41  Aligned_cols=110  Identities=15%  Similarity=0.077  Sum_probs=80.3

Q ss_pred             Cccc-CCCCCeeeccc-cCCCEE-EEEEecCCCHHhHH-HH--HHHHHHHHhhhhhccCCCeEEEE-EecccCCCCCChh
Q 008311          329 PLVD-GSTKRRVNIEV-LRRKNV-LLLISDLDISQEEL-SI--LEQIYNESRLHLTRQESHYEVVW-IPIVDHFIHWDDP  401 (570)
Q Consensus       329 pl~~-g~~G~~Vsls~-LkGKvV-lL~FwAsWCpPCr~-e~--L~~iY~elk~~~~k~~~~fEIV~-IsIvD~s~~w~D~  401 (570)
                      ..+. +.+|+.+++++ ++||+| +++|||+|||+|+. ++  |.+.|+++++      .+++||+ ||. |     +..
T Consensus        24 f~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~------~gv~vv~~iS~-D-----~~~   91 (173)
T 3mng_A           24 VEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKA------KGVQVVACLSV-N-----DAF   91 (173)
T ss_dssp             CEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHT------TTCCEEEEEES-S-----CHH
T ss_pred             eEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh------CCCEEEEEEcC-C-----CHH
Confidence            3345 77899999999 599955 55667999999994 88  9999999973      4799997 985 2     233


Q ss_pred             hHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCC-------------CCceEEEECCCCcEEccc
Q 008311          402 TQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-------------NKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       402 ~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-------------~IPtlVVLDpqGkVv~~n  457 (570)
                      ..++|.+- ...+   .+||.+.|.  ...+.+.||+.             ..|.++||| +|+|+...
T Consensus        92 ~~~~f~~~-~~~~---~~fp~l~D~--~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~  153 (173)
T 3mng_A           92 VTGEWGRA-HKAE---GKVRLLADP--TGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALN  153 (173)
T ss_dssp             HHHHHHHH-TTCT---TTCEEEECT--TCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred             HHHHHHHH-hCCC---CceEEEECC--ChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEE
Confidence            45566542 2222   126666675  34688888875             359999999 99998763

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.47  E-value=8.9e-14  Score=136.52  Aligned_cols=115  Identities=10%  Similarity=0.060  Sum_probs=84.2

Q ss_pred             CCcccCCCCCeeeccccCCC--EEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhH
Q 008311          328 QPLVDGSTKRRVNIEVLRRK--NVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQ  403 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGK--vVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~  403 (570)
                      ...+.+.+| ++++++++||  +|+++|||+|||+|..++  |.++|+++++      .+++||+||+ |     +....
T Consensus        13 ~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~------~~v~vi~IS~-D-----~~~~~   79 (224)
T 1prx_A           13 NFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAK------RNVKLIALSI-D-----SVEDH   79 (224)
T ss_dssp             CCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHT------TTEEEEEEES-S-----CHHHH
T ss_pred             CcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHH------CCCEEEEEcC-C-----CHHHH
Confidence            344567788 9999999998  677788999999999999  9999999963      4799999996 3     23344


Q ss_pred             HHHHHH-HcCCCc---eeeccccccChHHHHHHHHhCCCC------------CCceEEEECCCCcEEccc
Q 008311          404 KKFETL-QSSMPW---YTVYHPTLIDRAVIRYVKDVWHFK------------NKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       404 ~~F~~~-~~~MPW---~aV~fP~l~D~~~~~~L~~~y~V~------------~IPtlVVLDpqGkVv~~n  457 (570)
                      ..|.+. .....-   ..++||.+.|.  ...+.+.|++.            .+|+++|||++|+|+...
T Consensus        80 ~~~~~~i~~~~~~~~~~~~~fpil~D~--~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~  147 (224)
T 1prx_A           80 LAWSKDINAYNSEEPTEKLPFPIIDDR--NRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSI  147 (224)
T ss_dssp             HHHHHHHHHHTTSCCCSCCSSCEEECT--TCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHhhCcccccCcCcceeecC--chHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEE
Confidence            455432 111110   23456666674  34678889873            379999999999998753

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.45  E-value=9.1e-14  Score=136.07  Aligned_cols=114  Identities=8%  Similarity=0.043  Sum_probs=83.5

Q ss_pred             CcccCC--CCCeeeccccCCC--EEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhh
Q 008311          329 PLVDGS--TKRRVNIEVLRRK--NVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPT  402 (570)
Q Consensus       329 pl~~g~--~G~~Vsls~LkGK--vVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~  402 (570)
                      ..+.+.  +| ++++++++||  +|+++|||+|||+|..++  |.++|+++++      .+++||+||+ |     +...
T Consensus        12 F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~------~~v~vi~vS~-D-----~~~~   78 (220)
T 1xcc_A           12 FTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLK------LNCKLIGFSC-N-----SKES   78 (220)
T ss_dssp             CEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHT------TTEEEEEEES-S-----CHHH
T ss_pred             cEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH------cCCEEEEEeC-C-----CHHH
Confidence            344566  78 8999999998  666677999999999999  9999999973      4799999996 3     2334


Q ss_pred             HHHHHHHHcCC-CceeeccccccChHHHHHHHHhCCCC------------CCceEEEECCCCcEEccc
Q 008311          403 QKKFETLQSSM-PWYTVYHPTLIDRAVIRYVKDVWHFK------------NKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       403 ~~~F~~~~~~M-PW~aV~fP~l~D~~~~~~L~~~y~V~------------~IPtlVVLDpqGkVv~~n  457 (570)
                      .+.|.+..... .=..++||.+.|.  .+.+.+.|++.            .+|+++|||++|+|+...
T Consensus        79 ~~~~~~~i~~~~~~~~~~fpil~D~--~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~  144 (220)
T 1xcc_A           79 HDKWIEDIKYYGKLNKWEIPIVCDE--SRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATV  144 (220)
T ss_dssp             HHHHHHHHHHHHTCSCCCCCEEECT--TSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHHHhcCCCCcceeEECc--hhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEE
Confidence            45554321100 0034567766675  34688889983            379999999999998763

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.45  E-value=7.2e-14  Score=138.48  Aligned_cols=114  Identities=8%  Similarity=0.050  Sum_probs=85.0

Q ss_pred             CCcccCCCCCeeeccccCCC-EEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhH
Q 008311          328 QPLVDGSTKRRVNIEVLRRK-NVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQ  403 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGK-vVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~  403 (570)
                      ...+.+.+| ++++++++|| +|+|+|| |+|||+|..++  |.++|+++++      .+++||+||+ |     +....
T Consensus        11 dF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~------~~v~vigIS~-D-----~~~~~   77 (233)
T 2v2g_A           11 NFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKK------RGVKLIALSC-D-----NVADH   77 (233)
T ss_dssp             CCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHH------TTEEEEEEES-S-----CHHHH
T ss_pred             CcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHH------cCCEEEEEcC-C-----CHHHH
Confidence            344567788 8999999998 9999998 99999999999  9999999973      4799999996 3     23344


Q ss_pred             HHHHHHHc---CCCceeeccccccChHHHHHHHHhCCCC------------CCceEEEECCCCcEEccc
Q 008311          404 KKFETLQS---SMPWYTVYHPTLIDRAVIRYVKDVWHFK------------NKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       404 ~~F~~~~~---~MPW~aV~fP~l~D~~~~~~L~~~y~V~------------~IPtlVVLDpqGkVv~~n  457 (570)
                      +.|.+...   +.. ..++||.+.|.  .+.+.+.|++.            .+|+++|||++|+|+...
T Consensus        78 ~~~~~~i~~~~~~~-~~~~fpil~D~--~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~  143 (233)
T 2v2g_A           78 KEWSEDVKCLSGVK-GDMPYPIIADE--TRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSI  143 (233)
T ss_dssp             HHHHHHHHHHHTCC-SSCSSCEEECT--TCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHhhCcc-cCCceEEEECC--hHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEE
Confidence            55544211   110 02356666674  34688889984            589999999999998753

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.45  E-value=8.8e-14  Score=139.49  Aligned_cols=112  Identities=11%  Similarity=0.072  Sum_probs=84.9

Q ss_pred             cccCCCCCeeec-ccc--CCCE-EEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhH
Q 008311          330 LVDGSTKRRVNI-EVL--RRKN-VLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQ  403 (570)
Q Consensus       330 l~~g~~G~~Vsl-s~L--kGKv-VlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~  403 (570)
                      .+.+.+| ++++ +++  +||+ |+++|||+||++|..++  |.++|+++++      .+++||+||+ |     +....
T Consensus        15 ~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~------~gv~VI~VS~-D-----s~~~~   81 (249)
T 3a2v_A           15 EVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQR------LGVDLIGLSV-D-----SVFSH   81 (249)
T ss_dssp             EEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHH------TTEEEEEEES-S-----CHHHH
T ss_pred             EEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHh------CCcEEEEEEC-C-----CHHHH
Confidence            3445677 7999 999  9995 56689999999999999  9999999973      3799999996 3     23444


Q ss_pred             HHHHHHHcCCCceeeccccccChHHHHHHHHhCCCC-------CCceEEEECCCCcEEcc
Q 008311          404 KKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       404 ~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-------~IPtlVVLDpqGkVv~~  456 (570)
                      ..|.+...+..-..++||.+.|.  .+.+.+.|++.       ++|+++|||++|+|+..
T Consensus        82 ~~w~~~~~~~~~~~i~fPil~D~--~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~  139 (249)
T 3a2v_A           82 IKWKEWIERHIGVRIPFPIIADP--QGTVARRLGLLHAESATHTVRGVFIVDARGVIRTM  139 (249)
T ss_dssp             HHHHHHHHHHTCCCCCSCEEECT--TSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEE
T ss_pred             HHHHHHHHHhcCCCCceeEEECC--chHHHHHhCCccccCCCcccceEEEECCCCeEEEE
Confidence            55654221111125667777674  35688899987       89999999999999875

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.42  E-value=2.1e-13  Score=127.83  Aligned_cols=101  Identities=9%  Similarity=0.040  Sum_probs=75.5

Q ss_pred             Ceeecccc-CCC-EEEEEEecCCCHHhHHH-H--HHHHHHHHhhhhhccCCCeE-EEEEecccCCCCCChhhHHHHHHHH
Q 008311          337 RRVNIEVL-RRK-NVLLLISDLDISQEELS-I--LEQIYNESRLHLTRQESHYE-VVWIPIVDHFIHWDDPTQKKFETLQ  410 (570)
Q Consensus       337 ~~Vsls~L-kGK-vVlL~FwAsWCpPCr~e-~--L~~iY~elk~~~~k~~~~fE-IV~IsIvD~s~~w~D~~~~~F~~~~  410 (570)
                      ++++++++ +|| +|+++|||+|||||+.+ +  |.++|+++++      .+++ ||+||. |     +....+.|.+-.
T Consensus        33 ~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~------~g~~~vv~Is~-d-----~~~~~~~~~~~~  100 (171)
T 2pwj_A           33 STTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKA------KGVDSVICVAI-N-----DPYTVNAWAEKI  100 (171)
T ss_dssp             CCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHH------TTCSEEEEEES-S-----CHHHHHHHHHHT
T ss_pred             ceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHH------CCCCEEEEEeC-C-----CHHHHHHHHHHh
Confidence            89999996 996 77889999999999999 8  9999999973      3689 999996 2     233445554421


Q ss_pred             cCCCceeeccccccChHHHHHHHHhCCCCC-----------CceEEEECCCCcEEcc
Q 008311          411 SSMPWYTVYHPTLIDRAVIRYVKDVWHFKN-----------KPILVVLDPQGRVVSP  456 (570)
Q Consensus       411 ~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~-----------IPtlVVLDpqGkVv~~  456 (570)
                       .+   ..+||.+.|.  ...+.+.||+..           .|++++|| +|+|+..
T Consensus       101 -~~---~~~fp~l~D~--~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~  150 (171)
T 2pwj_A          101 -QA---KDAIEFYGDF--DGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKAL  150 (171)
T ss_dssp             -TC---TTTSEEEECT--TCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEE
T ss_pred             -CC---CCceEEEECC--ccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEE
Confidence             21   1246666675  345778888752           57889999 9999875

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.34  E-value=1.6e-12  Score=128.05  Aligned_cols=115  Identities=13%  Similarity=0.131  Sum_probs=89.3

Q ss_pred             CCCccc-----CCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCC
Q 008311          327 LQPLVD-----GSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHW  398 (570)
Q Consensus       327 ~~pl~~-----g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w  398 (570)
                      ++|.|.     +.+|++|++++++||+|+|+|| +.|||.|..++  +.+.|+++++      .+.+||+||. |     
T Consensus        28 ~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~------~g~~vigiS~-D-----   95 (216)
T 3sbc_A           28 QAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEE------QGAQVLFAST-D-----   95 (216)
T ss_dssp             BCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHH------TTEEEEEEES-S-----
T ss_pred             cCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhcc------CCceEEEeec-C-----
Confidence            456554     5577899999999999999999 99999999999  9999999974      4799999996 3     


Q ss_pred             ChhhHHHHHHH-HcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEc
Q 008311          399 DDPTQKKFETL-QSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVS  455 (570)
Q Consensus       399 ~D~~~~~F~~~-~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~  455 (570)
                      +......|.+. .....-..++||.+.|.  .+.+.+.||+-      ..+.++||||+|+|..
T Consensus        96 s~~sh~aw~~~~~~~~~~~~l~fpllsD~--~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~  157 (216)
T 3sbc_A           96 SEYSLLAWTNIPRKEGGLGPINIPLLADT--NHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRH  157 (216)
T ss_dssp             CHHHHHHHHTSCGGGTCCCSCSSCEEECT--TSHHHHHHTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             chhhHHHHHHHHHHhCCccCcccceEeCC--CCHHHHHcCCeeccCCceeeEEEEECCCCeEEE
Confidence            34456667542 22222235778877775  45789999982      3578999999999965

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.27  E-value=8.5e-12  Score=123.09  Aligned_cols=115  Identities=14%  Similarity=0.161  Sum_probs=91.7

Q ss_pred             CCCccc------CCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCC
Q 008311          327 LQPLVD------GSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIH  397 (570)
Q Consensus       327 ~~pl~~------g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~  397 (570)
                      ++|.|.      +.+|++|++++++||+|+|+|+ +.|||.|..|+  +.+.|+++++      .+.+||+||. |    
T Consensus        31 ~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~------~g~~vigiS~-D----   99 (219)
T 3tue_A           31 PAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNE------LNCEVLACSI-D----   99 (219)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHT------TTEEEEEEES-S----
T ss_pred             cCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhcc------CCcEEEEeeC-C----
Confidence            466664      5688899999999999999999 89999999999  9999999973      4899999996 3    


Q ss_pred             CChhhHHHHHH-HHcCCCceeeccccccChHHHHHHHHhCCC----CCCc--eEEEECCCCcEEc
Q 008311          398 WDDPTQKKFET-LQSSMPWYTVYHPTLIDRAVIRYVKDVWHF----KNKP--ILVVLDPQGRVVS  455 (570)
Q Consensus       398 w~D~~~~~F~~-~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V----~~IP--tlVVLDpqGkVv~  455 (570)
                       +.....+|.+ ...+..-..++||.+.|.  .+.+.+.||+    .+++  .++||||+|+|..
T Consensus       100 -s~~sh~~w~~~~~~~~~~~~l~fpllsD~--~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~  161 (219)
T 3tue_A          100 -SEYAHLQWTLQDRKKGGLGTMAIPILADK--TKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQ  161 (219)
T ss_dssp             -CHHHHHHHHHSCGGGTCCCSCSSCEEECT--TSHHHHHTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             -chhhHHHHhhhhHHhcCccccccccccCc--ccHHHHHcCCcccCCCeeEEEEEEECCCCeEEE
Confidence             3456677754 234445556788887776  4579999998    2444  7999999999965

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.26  E-value=1.3e-11  Score=109.88  Aligned_cols=82  Identities=10%  Similarity=0.067  Sum_probs=67.4

Q ss_pred             cCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHH
Q 008311          332 DGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETL  409 (570)
Q Consensus       332 ~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~  409 (570)
                      .+.+|..+.++.++||+|+|+|||+||++|+.+.  |.+++++++       .++.++.|.+        |+.       
T Consensus        37 ~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~-------~~~~~~~v~~--------~~~-------   94 (141)
T 3hxs_A           37 ADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA-------GKIYIYKVNV--------DKE-------   94 (141)
T ss_dssp             CCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC-------
T ss_pred             hccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CceEEEEEEC--------CCC-------
Confidence            4556778899999999999999999999999999  999998885       2577888774        211       


Q ss_pred             HcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          410 QSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       410 ~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                                          ..+.+.|++.++|+++++|++|+++.
T Consensus        95 --------------------~~~~~~~~v~~~Pt~~~~~~~g~~~~  120 (141)
T 3hxs_A           95 --------------------PELARDFGIQSIPTIWFVPMKGEPQV  120 (141)
T ss_dssp             --------------------HHHHHHTTCCSSSEEEEECSSSCCEE
T ss_pred             --------------------HHHHHHcCCCCcCEEEEEeCCCCEEE
Confidence                                12567799999999999999999863

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.26  E-value=2e-11  Score=107.65  Aligned_cols=86  Identities=8%  Similarity=0.137  Sum_probs=68.5

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      .|.+...+++.++....+||+|+|+|||+||+||+.+.  |.++++++++       ++.++.|++        |+.   
T Consensus        24 ~~~~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~-------~v~~~~vd~--------d~~---   85 (128)
T 3ul3_B           24 VPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK-------RIYLLKVDL--------DKN---   85 (128)
T ss_dssp             --CCCCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-------GEEEEEEEG--------GGC---
T ss_pred             CCccccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC-------CeEEEEEEC--------CCC---
Confidence            55666777777788788999999999999999999999  9999998852       577888874        211   


Q ss_pred             HHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                                              ..+.++|+++++|+++++ ++|+++.+
T Consensus        86 ------------------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~  111 (128)
T 3ul3_B           86 ------------------------ESLARKFSVKSLPTIILL-KNKTMLAR  111 (128)
T ss_dssp             ------------------------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             ------------------------HHHHHHcCCCCcCEEEEE-ECCEEEEE
Confidence                                    136678999999999999 78998764

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.26  E-value=1e-11  Score=128.63  Aligned_cols=106  Identities=15%  Similarity=0.085  Sum_probs=80.7

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ...+.+.+|+++++++|+||+|+|+|| +.|||.|..++ ..+.+ .      ..++++||+||. |     +....+.|
T Consensus         6 ~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~-~~~~~-~------~~~~~~v~gis~-D-----~~~~~~~f   71 (322)
T 4eo3_A            6 HFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREA-VEFSR-E------NFEKAQVVGISR-D-----SVEALKRF   71 (322)
T ss_dssp             CCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHH-HHHHH-S------CCTTEEEEEEES-C-----CHHHHHHH
T ss_pred             CcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHH-HHHHH-H------hhCCCEEEEEeC-C-----CHHHHHHH
Confidence            455678899999999999999999999 57899999987 22222 1      135799999996 3     34455677


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCC----CCCceEEEECCCCcEEc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHF----KNKPILVVLDPQGRVVS  455 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V----~~IPtlVVLDpqGkVv~  455 (570)
                      .+-      +.++||.+.|..  ..+.+.||+    ..+|+++|||++|+|+.
T Consensus        72 ~~~------~~l~fp~l~D~~--~~v~~~ygv~~~~~~~r~tfiId~~G~i~~  116 (322)
T 4eo3_A           72 KEK------NDLKVTLLSDPE--GILHEFFNVLENGKTVRSTFLIDRWGFVRK  116 (322)
T ss_dssp             HHH------HTCCSEEEECTT--CHHHHHTTCEETTEECCEEEEECTTSBEEE
T ss_pred             HHh------hCCceEEEEcCc--hHHHHhcCCCCCCcCccEEEEECCCCEEEE
Confidence            653      235677777863  578999999    35899999999999973

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.26  E-value=5.9e-12  Score=124.59  Aligned_cols=107  Identities=11%  Similarity=0.103  Sum_probs=78.9

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCC-CHHhH-----HHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCCh
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLD-ISQEE-----LSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDD  400 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsW-CpPCr-----~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D  400 (570)
                      ..+.+.+|+.+++++++||+|+|+||++| ||+|.     .++  |.+.   ++        +++||+||. |     +.
T Consensus        31 FtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~--------gv~VvgIS~-D-----s~   93 (224)
T 3keb_A           31 FMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WP--------HLKLIVITV-D-----SP   93 (224)
T ss_dssp             CEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CT--------TSEEEEEES-S-----CH
T ss_pred             eEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cC--------CCEEEEEEC-C-----CH
Confidence            34557789999999999999999999999 99999     776  5544   22        589999996 3     34


Q ss_pred             hhHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCC---------CceEEEECCCCcEEcccc
Q 008311          401 PTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKN---------KPILVVLDPQGRVVSPNA  458 (570)
Q Consensus       401 ~~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~---------IPtlVVLDpqGkVv~~na  458 (570)
                      ...++|.+-. ..+    +||.+.|.. ...+.+.||+..         .|+++|||++|+|+....
T Consensus        94 ~~~~~f~~~~-gl~----~fplLsD~~-~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~  154 (224)
T 3keb_A           94 SSLARARHEH-GLP----NIALLSTLR-GRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSER  154 (224)
T ss_dssp             HHHHHHHHHH-CCT----TCEEEESTT-CTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEE
T ss_pred             HHHHHHHHHc-CCC----CceEEEcCC-chHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEe
Confidence            4456665422 221    355566741 246888899864         799999999999997643

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.25  E-value=6.6e-12  Score=118.40  Aligned_cols=77  Identities=13%  Similarity=0.207  Sum_probs=57.2

Q ss_pred             eccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCcee
Q 008311          340 NIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYT  417 (570)
Q Consensus       340 sls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~a  417 (570)
                      .+++++||+|+|+|||+|||||+.++  |.++++++.        +++|+.|++        |+..+..+          
T Consensus        48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~--------~v~~~~v~~--------d~~~~~~~----------  101 (167)
T 1z6n_A           48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--------NIELAIISK--------GRAEDDLR----------  101 (167)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--------TEEEEEECH--------HHHHHHTT----------
T ss_pred             HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--------CcEEEEEEC--------CCCHHHHH----------
Confidence            45678999999999999999999999  999987652        588888874        32211100          


Q ss_pred             eccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          418 VYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       418 V~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                       .|    .         ..+++++|+++++|++|+++.+
T Consensus       102 -~~----~---------~~~v~~iPt~i~~~~~G~~~~~  126 (167)
T 1z6n_A          102 -QR----L---------ALERIAIPLVLVLDEEFNLLGR  126 (167)
T ss_dssp             -TT----T---------TCSSCCSSEEEEECTTCCEEEE
T ss_pred             -HH----H---------HcCCCCcCeEEEECCCCCEEEE
Confidence             01    0         1258999999999999998753

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.25  E-value=3.7e-12  Score=116.78  Aligned_cols=91  Identities=12%  Similarity=0.099  Sum_probs=66.5

Q ss_pred             CCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--H---HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH
Q 008311          335 TKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--L---EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET  408 (570)
Q Consensus       335 ~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L---~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~  408 (570)
                      .|+.+.++..+||+|+|+|| |+||+||+.++  |   .++.+.++       .++.++.|.+ +      +..      
T Consensus        36 ~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~-------~~~~~v~vd~-~------~~~------   95 (154)
T 2ju5_A           36 YAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG-------VHLHMVEVDF-P------QKN------   95 (154)
T ss_dssp             HHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH-------HHCEEEEEEC-C------SSC------
T ss_pred             HHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc-------CcEEEEEecC-c------ccc------
Confidence            45566777788999999999 99999999998  6   56654442       2577777775 1      111      


Q ss_pred             HHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                         .++     ++. .|  ....+.+.|++.++|+++++|++|+++.+
T Consensus        96 ---~~~-----~~~-~~--~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~  132 (154)
T 2ju5_A           96 ---HQP-----EEQ-RQ--KNQELKAQYKVTGFPELVFIDAEGKQLAR  132 (154)
T ss_dssp             ---CCC-----HHH-HH--HHHHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             ---CCC-----hhh-Hh--hHHHHHHHcCCCCCCEEEEEcCCCCEEEE
Confidence               122     221 12  24578899999999999999999999875

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.23  E-value=1.3e-12  Score=120.74  Aligned_cols=102  Identities=11%  Similarity=0.114  Sum_probs=62.6

Q ss_pred             eeccccCCCEEEEEEecCCCHHhHHHH--H---HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCC
Q 008311          339 VNIEVLRRKNVLLLISDLDISQEELSI--L---EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSM  413 (570)
Q Consensus       339 Vsls~LkGKvVlL~FwAsWCpPCr~e~--L---~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~M  413 (570)
                      +..+..+||+|+|+|||+||+||+.+.  +   .++.+.+++       ++.++.|++.+.     ++....+ .+....
T Consensus        40 ~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~-------~~~~v~v~~d~~-----~~~~~~~-~~~~~~  106 (172)
T 3f9u_A           40 MEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN-------DYVLITLYVDNK-----TPLTEPV-KIMENG  106 (172)
T ss_dssp             HHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH-------HCEEEEEETTCC-----CEEEEEE-EEEETT
T ss_pred             HHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-------CEEEEEEecCcc-----cccchhh-hhhhcc
Confidence            334446799999999999999999853  2   566666542       588999986211     1000000 001112


Q ss_pred             CceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          414 PWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       414 PW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .+..+..  +.+ .......+.|++.++|+++++|++|+++.+
T Consensus       107 ~~~~~~~--~~~-~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~  146 (172)
T 3f9u_A          107 TERTLRT--VGD-KWSYLQRVKFGANAQPFYVLIDNEGNPLNK  146 (172)
T ss_dssp             EEEEEEE--HHH-HHHHHHHHHHSCCCSSEEEEECTTSCBSSC
T ss_pred             hhhhhhh--hhh-hhhHHHHHHcCCCCcceEEEECCCCCEEee
Confidence            2222221  112 112233688999999999999999999875

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.21  E-value=4.4e-11  Score=104.53  Aligned_cols=77  Identities=10%  Similarity=0.090  Sum_probs=62.0

Q ss_pred             eccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCcee
Q 008311          340 NIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYT  417 (570)
Q Consensus       340 sls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~a  417 (570)
                      .....+||+|+|+|||+||++|+.+.  |.+++++++       .++.++.|++        +                 
T Consensus        20 ~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~-------~~v~~~~v~~--------~-----------------   67 (126)
T 2l57_A           20 LEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE-------GKFNIYYARL--------E-----------------   67 (126)
T ss_dssp             TTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS-------SSCEEEEEET--------T-----------------
T ss_pred             HHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc-------CCeEEEEEeC--------C-----------------
Confidence            34556899999999999999999998  888888874       3688999883        1                 


Q ss_pred             eccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          418 VYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       418 V~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                            .|.  ...+.+.|++.++|+++++|++|+++.+
T Consensus        68 ------~d~--~~~~~~~~~v~~~Pt~~~~~~~G~~~~~   98 (126)
T 2l57_A           68 ------EEK--NIDLAYKYDANIVPTTVFLDKEGNKFYV   98 (126)
T ss_dssp             ------SSH--HHHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             ------CCc--hHHHHHHcCCcceeEEEEECCCCCEEEE
Confidence                  011  2346778999999999999999999763

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.20  E-value=9.8e-12  Score=110.83  Aligned_cols=83  Identities=10%  Similarity=-0.040  Sum_probs=63.6

Q ss_pred             CCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--H---HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          333 GSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--L---EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       333 g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L---~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      +.++....+++.+||+|+|+|||+||++|+.+.  +   .+++++++        ++.++.|++ +      +..     
T Consensus        18 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~--------~~~~~~vd~-~------~~~-----   77 (134)
T 2fwh_A           18 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--------DTVLLQANV-T------AND-----   77 (134)
T ss_dssp             SHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--------TSEEEEEEC-T------TCC-----
T ss_pred             CHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--------CcEEEEEeC-C------CCc-----
Confidence            334445667778899999999999999999977  5   77777663        488888875 1      100     


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                                       |  ....+.+.|++.++|+++++|++|+++
T Consensus        78 -----------------~--~~~~l~~~~~v~~~Pt~~~~d~~G~~v  105 (134)
T 2fwh_A           78 -----------------A--QDVALLKHLNVLGLPTILFFDGQGQEH  105 (134)
T ss_dssp             -----------------H--HHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred             -----------------c--hHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence                             1  124577889999999999999999997

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.13  E-value=6.7e-11  Score=104.32  Aligned_cols=75  Identities=21%  Similarity=0.209  Sum_probs=60.4

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HH--HHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LE--QIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY  419 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~--~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~  419 (570)
                      .+||+|+|+|||+||+||+.+.  |.  ++.++++.       ++.++.|++       .+                   
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~-------~~~~~~vd~-------~~-------------------   73 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAK-------HFEVVKIDV-------GN-------------------   73 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH-------HCEEEEEEC-------TT-------------------
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC-------CEEEEEEeC-------Cc-------------------
Confidence            4699999999999999999998  88  88888752       588888875       11                   


Q ss_pred             cccccChHHHHHHHHhCCC---CCCceEEEECCCCcEEccc
Q 008311          420 HPTLIDRAVIRYVKDVWHF---KNKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       420 fP~l~D~~~~~~L~~~y~V---~~IPtlVVLDpqGkVv~~n  457 (570)
                      .    |.  ...+.+.|++   .++|+++++|++|+++.+.
T Consensus        74 ~----~~--~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~  108 (133)
T 3fk8_A           74 F----DR--NLELSQAYGDPIQDGIPAVVVVNSDGKVRYTT  108 (133)
T ss_dssp             T----TS--SHHHHHHTTCGGGGCSSEEEEECTTSCEEEEC
T ss_pred             c----cc--hHHHHHHhCCccCCccceEEEECCCCCEEEEe
Confidence            0    11  2347788999   9999999999999998763

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.06  E-value=2.1e-09  Score=103.44  Aligned_cols=171  Identities=9%  Similarity=0.040  Sum_probs=104.3

Q ss_pred             cCCCEEEEEE----ecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCcee
Q 008311          344 LRRKNVLLLI----SDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYT  417 (570)
Q Consensus       344 LkGKvVlL~F----wAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~a  417 (570)
                      +++.+++++|    ||.||++|+.++  +.++++++..     .+++.++.|..        ++                
T Consensus        19 ~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~-----~~~v~~~~vd~--------~~----------------   69 (229)
T 2ywm_A           19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVG-----QDKIKLDIYSP--------FT----------------   69 (229)
T ss_dssp             CCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHC-----TTTEEEEEECT--------TT----------------
T ss_pred             ccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCC-----CCceEEEEecC--------cc----------------
Confidence            3455677777    699999999999  8999888852     23577666642        11                


Q ss_pred             eccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhhcCccccccccCCCc
Q 008311          418 VYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDP  497 (570)
Q Consensus       418 V~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e~~w~~~ll~d~~d~  497 (570)
                                 ...+.++|+|+++|++++++..+.++...|...     .+.  +.. -...+.....     -...++.
T Consensus        70 -----------~~~l~~~~~v~~~Ptl~~~~~~~~~~~~~G~~~-----~~~--l~~-~~~~~~~~~~-----~~~~l~~  125 (229)
T 2ywm_A           70 -----------HKEETEKYGVDRVPTIVIEGDKDYGIRYIGLPA-----GLE--FTT-LINGIFHVSQ-----RKPQLSE  125 (229)
T ss_dssp             -----------CHHHHHHTTCCBSSEEEEESSSCCCEEEESCCC-----TTH--HHH-HHHHHHHHHT-----TCCSCCH
T ss_pred             -----------cHHHHHHcCCCcCcEEEEECCCcccceecCCcc-----HHH--HHH-HHHHHHhccC-----CccCCCH
Confidence                       123677899999999999963222222222110     000  000 0111111000     0001111


Q ss_pred             ccccc--ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          498 LVLDW--IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       498 ~i~~~--~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      ...+.  ...++.+.++|.+. |++|+.+.+.+.+++++. .++.++.|..+...+ +.+.+++.+.|+++++|+
T Consensus       126 ~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~G~  198 (229)
T 2ywm_A          126 KTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAN-DYITSKVIDASENQD-LAEQFQVVGVPKIVINKG  198 (229)
T ss_dssp             HHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHC-TTEEEEEEEGGGCHH-HHHHTTCCSSSEEEEGGG
T ss_pred             HHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHC-CCeEEEEEECCCCHH-HHHHcCCcccCEEEECCE
Confidence            11111  13456667777677 999999999999998875 478888888776544 555678999999998775

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.03  E-value=4.7e-10  Score=97.32  Aligned_cols=69  Identities=10%  Similarity=0.112  Sum_probs=51.6

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      .++|+|+|+|||+||+||+...  +.++.+++.        ++.++-|.+        |+.                   
T Consensus        18 ~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~--------~~~~~~vd~--------d~~-------------------   62 (105)
T 3zzx_A           18 AGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS--------DVVFLKVDV--------DEC-------------------   62 (105)
T ss_dssp             TTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TEEEEEEET--------TTC-------------------
T ss_pred             cCCCEEEEEEECCCCCCccCCCcchhhhhhccC--------CeEEEEEec--------ccC-------------------
Confidence            3579999999999999999887  777766552        455555543        210                   


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                              ..+.+.|+|+++||++++ ++|+++.+
T Consensus        63 --------~~l~~~~~V~~~PT~~~~-~~G~~v~~   88 (105)
T 3zzx_A           63 --------EDIAQDNQIACMPTFLFM-KNGQKLDS   88 (105)
T ss_dssp             --------HHHHHHTTCCBSSEEEEE-ETTEEEEE
T ss_pred             --------HHHHHHcCCCeecEEEEE-ECCEEEEE
Confidence                    136778999999998887 78998764

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.01  E-value=8.1e-10  Score=98.41  Aligned_cols=68  Identities=7%  Similarity=0.123  Sum_probs=55.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||++|+.+.  |.+++++++       +++.++.|.+        |+.                    
T Consensus        37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~-------~~v~~~~vd~--------~~~--------------------   81 (136)
T 2l5l_A           37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYD-------GQIVIYKVDT--------EKE--------------------   81 (136)
T ss_dssp             CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc-------CCEEEEEEeC--------CCC--------------------
Confidence            469999999999999999998  889888874       2578888774        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                             ..+.+.|++.++|+++++|++|+++
T Consensus        82 -------~~l~~~~~v~~~Pt~~~~~~~G~~~  106 (136)
T 2l5l_A           82 -------QELAGAFGIRSIPSILFIPMEGKPE  106 (136)
T ss_dssp             -------HHHHHHTTCCSSCEEEEECSSSCCE
T ss_pred             -------HHHHHHcCCCCCCEEEEECCCCcEE
Confidence                   1356679999999999999999986

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.00  E-value=6.6e-09  Score=99.39  Aligned_cols=170  Identities=9%  Similarity=0.003  Sum_probs=100.1

Q ss_pred             ccCCCEEEEEEecC-CCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          343 VLRRKNVLLLISDL-DISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       343 ~LkGKvVlL~FwAs-WCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      ..++++++++|||. ||++|+...  ..++++.+    ..+++.++.|.+        +..                   
T Consensus        19 ~~~~~v~lv~f~~~~~C~~C~~~~--~~~~~la~----~~~~v~~~~vd~--------~~~-------------------   65 (226)
T 1a8l_A           19 KMVNPVKLIVFVRKDHCQYCDQLK--QLVQELSE----LTDKLSYEIVDF--------DTP-------------------   65 (226)
T ss_dssp             GCCSCEEEEEEECSSSCTTHHHHH--HHHHHHHT----TCTTEEEEEEET--------TSH-------------------
T ss_pred             hcCCCeEEEEEecCCCCchhHHHH--HHHHHHHh----hCCceEEEEEeC--------CCc-------------------
Confidence            35678899999999 999998765  33333332    123577777764        110                   


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEE--ccccchhHhhhcCCCCCCCchhHHHHhhhcCccccccccCCCccc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV--SPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPLV  499 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv--~~na~~~I~~~G~~aFPFt~~~~e~L~~e~~w~~~ll~d~~d~~i  499 (570)
                            ....+.+.|+|+++|+++++ ++|+.+  ...        |.   |-. .....+..... ....-...++...
T Consensus        66 ------~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~~--------G~---~~~-~~l~~~l~~~l-~~~~~~~~l~~~~  125 (226)
T 1a8l_A           66 ------EGKELAKRYRIDRAPATTIT-QDGKDFGVRYF--------GL---PAG-HEFAAFLEDIV-DVSREETNLMDET  125 (226)
T ss_dssp             ------HHHHHHHHTTCCSSSEEEEE-ETTBCCSEEEE--------SC---CCT-THHHHHHHHHH-HHHHTCCCCCHHH
T ss_pred             ------ccHHHHHHcCCCcCceEEEE-cCCceeeEEEe--------cc---CcH-HHHHHHHHHHH-hhcCCCCCCCHHH
Confidence                  01236677999999999998 445421  111        11   110 11111111000 0000000112211


Q ss_pred             cccc--cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCC----CCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          500 LDWI--KEGKYIFLYGGDD-VEWVRKFTTAARSVANTAR----IPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       500 ~~~~--~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~----~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+.+  ..++.+.++|.+. |++|+.+.|.+.+++++.+    .++.++.|..|...+ +.+-+++.++|++++
T Consensus       126 ~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~  198 (226)
T 1a8l_A          126 KQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE-WADQYNVMAVPKIVI  198 (226)
T ss_dssp             HHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH-HHHHTTCCSSCEEEE
T ss_pred             HHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHH-HHHhCCCcccCeEEE
Confidence            1111  3456658888888 9999999999999987633    578889998876544 555678889999876

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=98.99  E-value=7.4e-10  Score=105.79  Aligned_cols=119  Identities=8%  Similarity=0.031  Sum_probs=83.8

Q ss_pred             Ceeecccc-CCC-EEEEEEecCCCHHhHH-HH--HHHHHHHHhhhhhccCCCe-EEEEEecccCCCCCChhhHHHHHHHH
Q 008311          337 RRVNIEVL-RRK-NVLLLISDLDISQEEL-SI--LEQIYNESRLHLTRQESHY-EVVWIPIVDHFIHWDDPTQKKFETLQ  410 (570)
Q Consensus       337 ~~Vsls~L-kGK-vVlL~FwAsWCpPCr~-e~--L~~iY~elk~~~~k~~~~f-EIV~IsIvD~s~~w~D~~~~~F~~~~  410 (570)
                      ++++++++ +|| +|+++||+.|||+|.. ++  +.+.|+++++      .++ +|+.||. |     +....++|.+- 
T Consensus        37 ~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~------~g~d~VigIS~-D-----~~~~~~~f~~~-  103 (176)
T 4f82_A           37 NACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRA------AGIDEIWCVSV-N-----DAFVMGAWGRD-  103 (176)
T ss_dssp             EEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHH------TTCCEEEEEES-S-----CHHHHHHHHHH-
T ss_pred             eEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHh------CCCCEEEEEeC-C-----CHHHHHHHHHH-
Confidence            78999997 998 5677999999999999 99  9999999974      368 9999996 3     23455666542 


Q ss_pred             cCCCceeeccccccChHHHHHHHHhCCCC------C-----CceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHH
Q 008311          411 SSMPWYTVYHPTLIDRAVIRYVKDVWHFK------N-----KPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEA  479 (570)
Q Consensus       411 ~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~-----IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~  479 (570)
                      ...+  . .||.+.|.  ...+.+.||+.      |     .|.++|| ++|+|+....       +..+ +++.+..++
T Consensus       104 ~~l~--~-~f~lLsD~--~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~-------~~~~-~~~~~~a~~  169 (176)
T 4f82_A          104 LHTA--G-KVRMMADG--SAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAV-------EAPG-KFEVSDAAS  169 (176)
T ss_dssp             TTCT--T-TSEEEECT--TCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEE-------CCTT-CCSSSSHHH
T ss_pred             hCCC--C-CceEEEcC--chHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEE-------cCCC-CcchhhHHH
Confidence            2222  0 26666675  34678888873      2     5889999 9999986532       1111 455555666


Q ss_pred             Hhh
Q 008311          480 LWK  482 (570)
Q Consensus       480 L~~  482 (570)
                      +++
T Consensus       170 vL~  172 (176)
T 4f82_A          170 VLA  172 (176)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=3.9e-10  Score=98.60  Aligned_cols=79  Identities=9%  Similarity=0.065  Sum_probs=56.9

Q ss_pred             eeeccccCCCEEEEEEecCCCHHhHHHH--H---HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcC
Q 008311          338 RVNIEVLRRKNVLLLISDLDISQEELSI--L---EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSS  412 (570)
Q Consensus       338 ~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L---~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~  412 (570)
                      .+.++..+||+|+|+|||+||++|+.+.  +   .++.+.++       .++.++.|.+        +.           
T Consensus        19 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~vd~--------~~-----------   72 (130)
T 2kuc_A           19 ALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN-------RHFVNLKMDM--------EK-----------   72 (130)
T ss_dssp             HHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHH-------HHSEEEEECS--------SS-----------
T ss_pred             HHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHh-------cCeEEEEEec--------CC-----------
Confidence            3455556899999999999999999987  5   44544443       1355555543        11           


Q ss_pred             CCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          413 MPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       413 MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                                  +  ....+.+.|++.++|+++++|++|+++.+
T Consensus        73 ------------~--~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~  102 (130)
T 2kuc_A           73 ------------G--EGVELRKKYGVHAYPTLLFINSSGEVVYR  102 (130)
T ss_dssp             ------------T--THHHHHHHTTCCSSCEEEEECTTSCEEEE
T ss_pred             ------------c--chHHHHHHcCCCCCCEEEEECCCCcEEEE
Confidence                        0  02346778999999999999999999864

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.99  E-value=2.5e-09  Score=121.27  Aligned_cols=167  Identities=8%  Similarity=-0.008  Sum_probs=105.9

Q ss_pred             ccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311          341 IEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV  418 (570)
Q Consensus       341 ls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV  418 (570)
                      ++.++||+|+|+|||+||+||+.++  |.+++++++       +++.++.|+.        ++.                
T Consensus       450 ~~~~~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~-------~~v~~~~vd~--------~~~----------------  498 (780)
T 3apo_A          450 FPASDKEPWLVDFFAPWSPPSRALLPELRKASTLLY-------GQLKVGTLDC--------TIH----------------  498 (780)
T ss_dssp             SCTTCCSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC----------------
T ss_pred             HHHcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhc-------CCeEEEEEeC--------CCC----------------
Confidence            3445899999999999999999998  999999885       2577787764        111                


Q ss_pred             ccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhhcCccccccccCCCcc
Q 008311          419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPL  498 (570)
Q Consensus       419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e~~w~~~ll~d~~d~~  498 (570)
                                 ..+.+.|+++++|++++++ +|++....        |    +.+.....+..++..-  .-+. .++..
T Consensus       499 -----------~~~~~~~~v~~~Pt~~~~~-~g~~~~~~--------g----~~~~~~l~~fi~~~~~--~~v~-~l~~~  551 (780)
T 3apo_A          499 -----------EGLCNMYNIQAYPTTVVFN-QSSIHEYE--------G----HHSAEQILEFIEDLRN--PSVV-SLTPS  551 (780)
T ss_dssp             -----------HHHHHHTTCCSSSEEEEEE-TTEEEEEC--------S----CSCHHHHHHHHHHHHS--CSEE-ECCHH
T ss_pred             -----------HHHHHHcCCCcCCeEEEEc-CCceeeec--------C----cccHHHHHHHHHhhcc--ccee-ecCcc
Confidence                       0156679999999999994 57653221        2    1222232222221100  0000 01111


Q ss_pred             -cccccc---CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          499 -VLDWIK---EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       499 -i~~~~~---egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                       ..+-+.   .++.+.++|.+. |++|+++.+.+.+++++.+..+-++.|..+..+ .+.+.+++-+.|++++
T Consensus       552 ~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pti~~  623 (780)
T 3apo_A          552 TFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYH-SFCTQENVQRYPEIRF  623 (780)
T ss_dssp             HHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTTH-HHHHHTTCCSSSEEEE
T ss_pred             cHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCCeEEEEEECcchH-HHHHHcCCCCCCeEEE
Confidence             111112   256667777777 999999999999999875556666777666433 3455567777888765

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=98.98  E-value=6.8e-10  Score=96.42  Aligned_cols=69  Identities=13%  Similarity=0.131  Sum_probs=54.7

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      .+||+|+|+|||+||+||+.+.  |.+++++++        ++.++.|.+        |+.                   
T Consensus        29 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--------~v~~~~vd~--------d~~-------------------   73 (116)
T 3qfa_C           29 AGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS--------NVIFLEVDV--------DDC-------------------   73 (116)
T ss_dssp             HTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT--------TSEEEEEET--------TTT-------------------
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--------CCEEEEEEC--------CCC-------------------
Confidence            3789999999999999999998  888877663        377777764        211                   


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                              ..+.+.|+++++|+++++ ++|+++.+
T Consensus        74 --------~~l~~~~~v~~~Pt~~~~-~~G~~~~~   99 (116)
T 3qfa_C           74 --------QDVASECEVKSMPTFQFF-KKGQKVGE   99 (116)
T ss_dssp             --------HHHHHHTTCCSSSEEEEE-SSSSEEEE
T ss_pred             --------HHHHHHcCCccccEEEEE-eCCeEEEE
Confidence                    136678999999999998 88988754

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.97  E-value=1.1e-09  Score=93.86  Aligned_cols=68  Identities=13%  Similarity=0.132  Sum_probs=54.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||++|+.+.  |.+++++++        ++.++.|.+        |+                     
T Consensus        23 ~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~--------~~~~~~vd~--------~~---------------------   65 (109)
T 3f3q_A           23 QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP--------QADFYKLDV--------DE---------------------   65 (109)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TT---------------------
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--------CCEEEEEEC--------CC---------------------
Confidence            589999999999999999998  888888773        377777764        21                     


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                        +    ..+.+.|+++++|++++++ +|+++.+
T Consensus        66 --~----~~l~~~~~v~~~Pt~~~~~-~G~~~~~   92 (109)
T 3f3q_A           66 --L----GDVAQKNEVSAMPTLLLFK-NGKEVAK   92 (109)
T ss_dssp             --C----HHHHHHTTCCSSSEEEEEE-TTEEEEE
T ss_pred             --C----HHHHHHcCCCccCEEEEEE-CCEEEEE
Confidence              0    1356779999999999998 9988764

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=98.97  E-value=9.4e-10  Score=93.75  Aligned_cols=70  Identities=11%  Similarity=0.062  Sum_probs=54.2

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      .+||+|+|+|||+||++|+.+.  |.+++++++        ++.++.|.+       .+.                    
T Consensus        22 ~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~--------~v~~~~vd~-------~~~--------------------   66 (111)
T 2pu9_C           22 AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL--------DVIFLKLDC-------NQE--------------------   66 (111)
T ss_dssp             CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEEC-------SST--------------------
T ss_pred             cCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC--------CeEEEEEec-------Ccc--------------------
Confidence            4689999999999999999998  888887763        477777764       111                    


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                         +    ..+.+.|+++++|+ ++++++|+++.+
T Consensus        67 ---~----~~~~~~~~v~~~Pt-~~~~~~G~~~~~   93 (111)
T 2pu9_C           67 ---N----KTLAKELGIRVVPT-FKILKENSVVGE   93 (111)
T ss_dssp             ---T----HHHHHHHCCSBSSE-EEEESSSSEEEE
T ss_pred             ---h----HHHHHHcCCCeeeE-EEEEeCCcEEEE
Confidence               1    23667799999999 666799998753

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=98.95  E-value=8.7e-10  Score=100.90  Aligned_cols=67  Identities=12%  Similarity=0.059  Sum_probs=53.9

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||+||+.+.  |.+++++++       +.+.++.|++        |+.                    
T Consensus        22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~-------~~~~~~~vd~--------d~~--------------------   66 (149)
T 3gix_A           22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS-------KMAAIYLVDV--------DQT--------------------   66 (149)
T ss_dssp             CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTT-------TTEEEEEEET--------TTC--------------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcc-------CceEEEEEEC--------CcC--------------------
Confidence            489999999999999999999  998888774       2477777764        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                             ..+.+.|+|.++|+++ ++++|+++
T Consensus        67 -------~~l~~~~~v~~~Pt~~-~~~~G~~v   90 (149)
T 3gix_A           67 -------AVYTQYFDISYIPSTV-FFFNGQHM   90 (149)
T ss_dssp             -------CHHHHHTTCCSSSEEE-EEETTEEE
T ss_pred             -------HHHHHHcCCCccCeEE-EEECCeEE
Confidence                   1256779999999999 77899988

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=98.93  E-value=2e-09  Score=93.03  Aligned_cols=73  Identities=10%  Similarity=0.194  Sum_probs=54.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+|||||+.+.  |.+++++++         ..|+++.+ +     ...+.                   
T Consensus        28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~---------~~v~~~~~-~-----~~~~~-------------------   73 (118)
T 1zma_A           28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETK---------AHIYFINS-E-----EPSQL-------------------   73 (118)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC---------CCCEEEET-T-----CGGGH-------------------
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHhcC---------CeEEEEEC-C-----CcCcH-------------------
Confidence            578999999999999999999  888888763         34677775 1     11110                   


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                          +....+.+.|+++++|+++++ ++|+++.+
T Consensus        74 ----~~~~~~~~~~~i~~~Pt~~~~-~~G~~~~~  102 (118)
T 1zma_A           74 ----NDLQAFRSRYGIPTVPGFVHI-TDGQINVR  102 (118)
T ss_dssp             ----HHHHHHHHHHTCCSSCEEEEE-ETTEEEEE
T ss_pred             ----HHHHHHHHHcCCCCCCeEEEE-ECCEEEEE
Confidence                112346778999999999999 48988743

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.93  E-value=1.2e-09  Score=92.43  Aligned_cols=68  Identities=13%  Similarity=0.217  Sum_probs=47.6

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||+||+.+.  |.++.+++.        ++.++.|++        |+..                   
T Consensus        17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~--------~~~~~~vd~--------~~~~-------------------   61 (105)
T 4euy_A           17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--------YVEKIEILL--------QDMQ-------------------   61 (105)
T ss_dssp             CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT--------TEEEEEEEE--------CCC--------------------
T ss_pred             cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC--------CceEEEEEC--------CCCH-------------------
Confidence            689999999999999999988  888777652        477787775        1110                   


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                              .+.+.|+++++|++++++ +|+++.+
T Consensus        62 --------~l~~~~~v~~~Pt~~~~~-~G~~~~~   86 (105)
T 4euy_A           62 --------EIAGRYAVFTGPTVLLFY-NGKEILR   86 (105)
T ss_dssp             ----------------CCCCEEEEEE-TTEEEEE
T ss_pred             --------HHHHhcCCCCCCEEEEEe-CCeEEEE
Confidence                    245678999999999995 9998754

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=98.92  E-value=1.7e-09  Score=92.17  Aligned_cols=70  Identities=16%  Similarity=0.244  Sum_probs=53.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+++|||+||++|+.+.  |.+++++++.      .++.++.|++        +..                    
T Consensus        20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~------~~~~~~~vd~--------~~~--------------------   65 (112)
T 3d6i_A           20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSN------SNVSFLSIDA--------DEN--------------------   65 (112)
T ss_dssp             TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGG------TTSEEEEEET--------TTC--------------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCC------CCEEEEEEec--------ccC--------------------
Confidence            489999999999999999998  8888887641      3588888874        210                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+++++|+++++ ++|+++.+
T Consensus        66 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~~   91 (112)
T 3d6i_A           66 -------SEISELFEISAVPYFIII-HKGTILKE   91 (112)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------HHHHHHcCCCcccEEEEE-ECCEEEEE
Confidence                   135677999999999888 69998763

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=98.92  E-value=1.4e-09  Score=93.32  Aligned_cols=69  Identities=22%  Similarity=0.230  Sum_probs=56.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||++|+.+.  |.+++++++       +++.++.|++        |+.                  + 
T Consensus        16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~-------~~v~~~~vd~--------~~~------------------~-   61 (112)
T 2voc_A           16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMG-------DKLKIVKIDV--------DEN------------------Q-   61 (112)
T ss_dssp             SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHT-------TTCEEEEEET--------TTC------------------C-
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC-------CCcEEEEEEC--------CCC------------------H-
Confidence            799999999999999999998  999998884       2588888875        210                  0 


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                              .+.+.|+++++|+++++ ++|+++.+
T Consensus        62 --------~l~~~~~v~~~Pt~~~~-~~G~~~~~   86 (112)
T 2voc_A           62 --------ETAGKYGVMSIPTLLVL-KDGEVVET   86 (112)
T ss_dssp             --------SHHHHTTCCSBSEEEEE-ETTEEEEE
T ss_pred             --------HHHHHcCCCcccEEEEE-eCCEEEEE
Confidence                    15667999999999999 99998753

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=98.91  E-value=3.4e-09  Score=88.81  Aligned_cols=69  Identities=16%  Similarity=0.161  Sum_probs=55.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+++|||+||++|+.+.  |.++.++++       +++.++.|++        |+.                    
T Consensus        16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-------~~v~~~~v~~--------~~~--------------------   60 (105)
T 1nsw_A           16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA-------DKVTVAKLNV--------DEN--------------------   60 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHST-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCcEEEEEEC--------cCC--------------------
Confidence            579999999999999999998  888888774       2488888875        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+++++|+++++ ++|+++.+
T Consensus        61 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~~   86 (105)
T 1nsw_A           61 -------PETTSQFGIMSIPTLILF-KGGRPVKQ   86 (105)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------HHHHHHcCCccccEEEEE-eCCeEEEE
Confidence                   125667999999999999 89998753

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.91  E-value=2.8e-10  Score=105.63  Aligned_cols=77  Identities=14%  Similarity=0.188  Sum_probs=54.5

Q ss_pred             eeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCce
Q 008311          339 VNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWY  416 (570)
Q Consensus       339 Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~  416 (570)
                      +.....+||+|+|+|||+||+||+.+.  |.++.+..+.       ++.++.|++ |       .+..         +  
T Consensus        39 ~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~-------~~~~~~v~~-d-------~~~~---------~--   92 (164)
T 1sen_A           39 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISEL-------SHNFVMVNL-E-------DEEE---------P--   92 (164)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH-------HTTSEEEEE-E-------GGGS---------C--
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc-------CCeEEEEEe-c-------CCch---------H--
Confidence            444456899999999999999999999  7776655431       356788876 1       1110         0  


Q ss_pred             eeccccccChHHHHHHHHhCCC--CCCceEEEECCCCcEEcc
Q 008311          417 TVYHPTLIDRAVIRYVKDVWHF--KNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       417 aV~fP~l~D~~~~~~L~~~y~V--~~IPtlVVLDpqGkVv~~  456 (570)
                                     +.+.|++  .++|+++++|++|+++.+
T Consensus        93 ---------------~~~~~~~~~~~~Pt~~~~d~~G~~~~~  119 (164)
T 1sen_A           93 ---------------KDEDFSPDGGYIPRILFLDPSGKVHPE  119 (164)
T ss_dssp             ---------------SCGGGCTTCSCSSEEEEECTTSCBCTT
T ss_pred             ---------------HHHHhcccCCcCCeEEEECCCCCEEEE
Confidence                           1123445  669999999999999864

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=98.90  E-value=1.9e-09  Score=97.92  Aligned_cols=69  Identities=7%  Similarity=0.040  Sum_probs=55.0

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||+||+.+.  |.+++++++       +++.++.|++        |+.                  + 
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-------~~v~~~~vd~--------d~~------------------~-   67 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK-------NFAVIYLVDI--------TEV------------------P-   67 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT-------TTEEEEEEET--------TTC------------------C-
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC-------CCeEEEEEcc--------ccC------------------H-
Confidence            489999999999999999999  999998884       2588888875        111                  0 


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                              .+.+.|+++++|+++++ .+|+++..
T Consensus        68 --------~~~~~~~i~~~Pt~~~~-~~G~~v~~   92 (142)
T 1qgv_A           68 --------DFNKMYELYDPCTVMFF-FRNKHIMI   92 (142)
T ss_dssp             --------TTTTSSCSCSSCEEEEE-ETTEEEEE
T ss_pred             --------HHHHHcCCCCCCEEEEE-ECCcEEEE
Confidence                    13567999999999999 58888763

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=98.90  E-value=4e-09  Score=88.11  Aligned_cols=69  Identities=13%  Similarity=0.202  Sum_probs=55.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++|+|+++|||+||++|+.+.  +.+++++++       +++.++.|++        |+.                    
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~v~~--------~~~--------------------   62 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYE-------GKADILKLDV--------DEN--------------------   62 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC--------------------
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc-------CCcEEEEEEC--------CcC--------------------
Confidence            899999999999999999998  999998885       2488888874        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+++++|++++++ +|+++.+
T Consensus        63 -------~~~~~~~~v~~~Pt~~~~~-~G~~~~~   88 (106)
T 3die_A           63 -------PSTAAKYEVMSIPTLIVFK-DGQPVDK   88 (106)
T ss_dssp             -------HHHHHHTTCCSBSEEEEEE-TTEEEEE
T ss_pred             -------HHHHHhCCCcccCEEEEEe-CCeEEEE
Confidence                   1256679999999999995 9988753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.90  E-value=1.4e-09  Score=108.19  Aligned_cols=68  Identities=12%  Similarity=0.182  Sum_probs=56.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||+||+.+.  +.+++++++       +++.++.|++        |+.                    
T Consensus        25 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-------~~~~~~~vd~--------~~~--------------------   69 (287)
T 3qou_A           25 MTTPVLFYFWSERSQHCLQLTPILESLAAQYN-------GQFILAKLDC--------DAE--------------------   69 (287)
T ss_dssp             TTSCEEEEEECTTCTTTTTTHHHHHHHHHHHT-------SSSEEEEEET--------TTC--------------------
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHcC-------CCeEEEEEeC--------ccC--------------------
Confidence            589999999999999999999  999999885       2588888875        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|+|+++||++++ ++|+++.
T Consensus        70 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~   94 (287)
T 3qou_A           70 -------QMIAAQFGLRAIPTVYLF-QNGQPVD   94 (287)
T ss_dssp             -------HHHHHTTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHHcCCCCCCeEEEE-ECCEEEE
Confidence                   136678999999999999 7898875

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.89  E-value=3.5e-09  Score=89.59  Aligned_cols=67  Identities=3%  Similarity=-0.026  Sum_probs=53.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+++|||+||+||+.+.  |.++.+++.        ++.++.|++        |+.                    
T Consensus        20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~--------~~~~~~vd~--------~~~--------------------   63 (107)
T 1gh2_A           20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--------QAVFLEVDV--------HQC--------------------   63 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTS--------------------
T ss_pred             CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC--------CcEEEEEEC--------ccC--------------------
Confidence            689999999999999999998  888877662        477888774        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|+++++|+++++ ++|+++.
T Consensus        64 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~   88 (107)
T 1gh2_A           64 -------QGTAATNNISATPTFQFF-RNKVRID   88 (107)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHhcCCCcccEEEEE-ECCeEEE
Confidence                   125667999999999988 7898875

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.41  E-value=1.8e-10  Score=101.03  Aligned_cols=78  Identities=10%  Similarity=0.158  Sum_probs=58.0

Q ss_pred             CCeeeccccCCCEEEEEEecCCCHHhHHHH--H---HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHH
Q 008311          336 KRRVNIEVLRRKNVLLLISDLDISQEELSI--L---EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQ  410 (570)
Q Consensus       336 G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L---~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~  410 (570)
                      .+.+.....+||+|+|+|||+||++|+.+.  +   .++.+.++       .++.++.|++        +.+.       
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~vd~--------~~~~-------   66 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE-------ARFVVASVSV--------DTPE-------   66 (130)
Confidence            456777778999999999999999999987  6   67766653       2466666653        1110       


Q ss_pred             cCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECC-CCcE
Q 008311          411 SSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDP-QGRV  453 (570)
Q Consensus       411 ~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDp-qGkV  453 (570)
                                        ...+.+.|++.++|+++++|+ +|++
T Consensus        67 ------------------~~~~~~~~~v~~~Pt~~~~d~~~G~~   92 (130)
T 2lst_A           67 ------------------GQELARRYRVPGTPTFVFLVPKAGAW   92 (130)
Confidence                              123567799999999999997 4887

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=4.2e-09  Score=91.85  Aligned_cols=68  Identities=6%  Similarity=-0.042  Sum_probs=53.4

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      ++|+ |+|+|||+||++|+.+.  |.++++++++      .++.++.|.+        ++.                   
T Consensus        21 ~~~~-vlv~f~a~wC~~C~~~~p~~~~~~~~~~~------~~v~~~~vd~--------~~~-------------------   66 (126)
T 1x5e_A           21 LEGD-WMIEFYAPWCPACQNLQPEWESFAEWGED------LEVNIAKVDV--------TEQ-------------------   66 (126)
T ss_dssp             TSSE-EEEEEECSSCHHHHHHHHHHHHHHHHHGG------GTCEEEEEET--------TTC-------------------
T ss_pred             hCCC-EEEEEECCCCHHHHHHhHHHHHHHHHhcc------CCeEEEEEEC--------cCC-------------------
Confidence            4555 89999999999999999  9999988852      3588888774        111                   


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                              ..+.+.|+++++|+++++ ++|++.
T Consensus        67 --------~~~~~~~~v~~~Pt~~~~-~~G~~~   90 (126)
T 1x5e_A           67 --------PGLSGRFIINALPTIYHC-KDGEFR   90 (126)
T ss_dssp             --------HHHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred             --------HHHHHHcCCcccCEEEEE-eCCeEE
Confidence                    125677999999999999 899864

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=98.89  E-value=1.2e-09  Score=96.86  Aligned_cols=69  Identities=17%  Similarity=0.166  Sum_probs=55.4

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      .+||+|+|+|||+||++|+.+.  |.+++++++        ++.++.|++        |+.                   
T Consensus        44 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--------~v~~~~v~~--------~~~-------------------   88 (139)
T 3d22_A           44 RDGKIVLANFSARWCGPSRQIAPYYIELSENYP--------SLMFLVIDV--------DEL-------------------   88 (139)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTS-------------------
T ss_pred             hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--------CCEEEEEeC--------ccc-------------------
Confidence            4699999999999999999998  888887662        478888874        211                   


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                              ..+.+.|+++++|+++++ ++|+++.+
T Consensus        89 --------~~~~~~~~v~~~Pt~~~~-~~G~~~~~  114 (139)
T 3d22_A           89 --------SDFSASWEIKATPTFFFL-RDGQQVDK  114 (139)
T ss_dssp             --------HHHHHHTTCCEESEEEEE-ETTEEEEE
T ss_pred             --------HHHHHHcCCCcccEEEEE-cCCeEEEE
Confidence                    136677999999999888 89998753

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=98.88  E-value=4.2e-09  Score=88.71  Aligned_cols=69  Identities=17%  Similarity=0.247  Sum_probs=55.0

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||++|+.+.  |.++.++++       .++.++.|++        +..                  + 
T Consensus        19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~v~~--------~~~------------------~-   64 (108)
T 2trx_A           19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-------GKLTVAKLNI--------DQN------------------P-   64 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTEEEEEEET--------TTC------------------T-
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhC-------CCcEEEEEEC--------CCC------------------H-
Confidence            579999999999999999998  888888774       2577887774        110                  0 


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                              .+.+.|++.++|+++++ ++|+++.+
T Consensus        65 --------~~~~~~~v~~~Pt~~~~-~~G~~~~~   89 (108)
T 2trx_A           65 --------GTAPKYGIRGIPTLLLF-KNGEVAAT   89 (108)
T ss_dssp             --------THHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             --------HHHHHcCCcccCEEEEE-eCCEEEEE
Confidence                    15567999999999999 89998753

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=3.9e-09  Score=92.21  Aligned_cols=72  Identities=4%  Similarity=0.012  Sum_probs=55.1

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||++|+.+.  +.++++++++.   .+.++.++.|.+        +..                    
T Consensus        24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~~~~~vd~--------~~~--------------------   72 (133)
T 1x5d_A           24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQ---TKGKVKLAAVDA--------TVN--------------------   72 (133)
T ss_dssp             SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHH---TTTSEEEEEEET--------TTC--------------------
T ss_pred             CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhh---cCCcEEEEEEEC--------CCC--------------------
Confidence            479999999999999999998  88999888621   123577777764        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|+++++|+++++++ |+++.
T Consensus        73 -------~~l~~~~~v~~~Pt~~~~~~-g~~~~   97 (133)
T 1x5d_A           73 -------QVLASRYGIRGFPTIKIFQK-GESPV   97 (133)
T ss_dssp             -------CHHHHHHTCCSSSEEEEEET-TEEEE
T ss_pred             -------HHHHHhCCCCeeCeEEEEeC-CCceE
Confidence                   12567799999999999998 87553

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=98.87  E-value=4.9e-09  Score=89.06  Aligned_cols=68  Identities=24%  Similarity=0.161  Sum_probs=54.4

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||++|+.+.  |.+++++++       +++.++.|++        |.+                    
T Consensus        22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~v~~--------~~~--------------------   66 (112)
T 1t00_A           22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG-------DKIEIVKLNI--------DEN--------------------   66 (112)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhc-------CCeEEEEEEc--------CCC--------------------
Confidence            479999999999999999998  888888874       2588888875        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|++.++|+++++ ++|+++.
T Consensus        67 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~   91 (112)
T 1t00_A           67 -------PGTAAKYGVMSIPTLNVY-QGGEVAK   91 (112)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHhCCCCcccEEEEE-eCCEEEE
Confidence                   125667999999998877 7999874

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.87  E-value=2.4e-09  Score=93.89  Aligned_cols=79  Identities=8%  Similarity=0.073  Sum_probs=55.9

Q ss_pred             CCCeeecccc-CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHc
Q 008311          335 TKRRVNIEVL-RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQS  411 (570)
Q Consensus       335 ~G~~Vsls~L-kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~  411 (570)
                      ++........ +||+|+|+|||+||++|+.+.  |.+++++++.     ..++.++.|.+        +..         
T Consensus        13 ~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~-----~~~~~~~~vd~--------~~~---------   70 (133)
T 2dj3_A           13 VGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKG-----QKDLVIAKMDA--------TAN---------   70 (133)
T ss_dssp             CTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTT-----SSSEEEEEECT--------TTS---------
T ss_pred             cCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC-----CCCEEEEEecC--------CcC---------
Confidence            3343433333 489999999999999999999  9999998852     23566666543        110         


Q ss_pred             CCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          412 SMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       412 ~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                               +         .+.+.|+++++|+++++++.|++
T Consensus        71 ---------~---------~~~~~~~v~~~Pt~~~~~~g~~~   94 (133)
T 2dj3_A           71 ---------D---------ITNDQYKVEGFPTIYFAPSGDKK   94 (133)
T ss_dssp             ---------C---------CCCSSCCCSSSSEEEEECTTCTT
T ss_pred             ---------H---------HHHhhcCCCcCCEEEEEeCCCcc
Confidence                     0         12346999999999999987754

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=98.87  E-value=5.8e-09  Score=87.66  Aligned_cols=69  Identities=14%  Similarity=0.187  Sum_probs=54.4

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+++|||+||++|+.+.  |.+++++++       .++.++.|++        |+.                    
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~v~~--------~~~--------------------   62 (107)
T 1dby_A           18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK-------DKLKCVKLNT--------DES--------------------   62 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhC-------CceEEEEEEC--------CCC--------------------
Confidence            479999999999999999998  888888874       2488888874        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+++++|+++++ ++|+++.+
T Consensus        63 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~~   88 (107)
T 1dby_A           63 -------PNVASEYGIRSIPTIMVF-KGGKKCET   88 (107)
T ss_dssp             -------HHHHHHHTCCSSCEEEEE-SSSSEEEE
T ss_pred             -------HHHHHHCCCCcCCEEEEE-eCCEEEEE
Confidence                   125667899999998887 79998753

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=98.87  E-value=5.3e-09  Score=92.10  Aligned_cols=68  Identities=10%  Similarity=0.207  Sum_probs=53.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||++|+.+.  |.+++++++        ++.++.|++        |+.                    
T Consensus        37 ~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--------~v~~~~vd~--------d~~--------------------   80 (124)
T 1xfl_A           37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--------NVLFLKVDT--------DEL--------------------   80 (124)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--------SEEEEEEET--------TTS--------------------
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--------CcEEEEEEC--------ccC--------------------
Confidence            699999999999999999998  888877662        477777764        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+++++|+++++ ++|+++.+
T Consensus        81 -------~~l~~~~~v~~~Pt~~~~-~~G~~~~~  106 (124)
T 1xfl_A           81 -------KSVASDWAIQAMPTFMFL-KEGKILDK  106 (124)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------HHHHHHcCCCccCEEEEE-ECCEEEEE
Confidence                   136678999999998877 89998754

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.87  E-value=4e-09  Score=96.07  Aligned_cols=68  Identities=7%  Similarity=0.092  Sum_probs=54.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||++|+.+.  |.+++++++        ++.++.|++        ++.                    
T Consensus        31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--------~v~~~~vd~--------~~~--------------------   74 (153)
T 2wz9_A           31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--------QVSFVKLEA--------EGV--------------------   74 (153)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTS--------------------
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC--------CeEEEEEEC--------CCC--------------------
Confidence            489999999999999999988  888877652        577888875        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+++++|++++++ +|+++.+
T Consensus        75 -------~~l~~~~~v~~~Pt~~~~~-~G~~~~~  100 (153)
T 2wz9_A           75 -------PEVSEKYEISSVPTFLFFK-NSQKIDR  100 (153)
T ss_dssp             -------HHHHHHTTCCSSSEEEEEE-TTEEEEE
T ss_pred             -------HHHHHHcCCCCCCEEEEEE-CCEEEEE
Confidence                   1356779999999999999 9998753

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=98.87  E-value=2.3e-08  Score=97.73  Aligned_cols=69  Identities=4%  Similarity=-0.069  Sum_probs=54.5

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||+||+.+.  +.++++++++    .+.++.++.|++ +     .|+                     
T Consensus        29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~v~~~~vd~-~-----~~~---------------------   77 (244)
T 3q6o_A           29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKA----WRPALYLAALDC-A-----EET---------------------   77 (244)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGG----GTTTEEEEEEET-T-----STT---------------------
T ss_pred             CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHh----ccCcEEEEEEeC-C-----chh---------------------
Confidence            359999999999999999999  9999999863    134688888875 1     011                     


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCC
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQ  450 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpq  450 (570)
                            ...+.+.|+|+++|+++++++.
T Consensus        78 ------~~~l~~~~~v~~~Pt~~~~~~g   99 (244)
T 3q6o_A           78 ------NSAVCRDFNIPGFPTVRFFXAF   99 (244)
T ss_dssp             ------THHHHHHTTCCSSSEEEEECTT
T ss_pred             ------hHHHHHHcCCCccCEEEEEeCC
Confidence                  1246778999999999999973

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=98.87  E-value=3e-09  Score=94.90  Aligned_cols=76  Identities=17%  Similarity=0.186  Sum_probs=55.0

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      +++ +|+|+|||+||+||+.+.  |.++++++         ++.++.|++.+      +.+....               
T Consensus        30 ~~~-~vlv~F~a~wC~~C~~~~p~l~~l~~~~---------~v~~~~vd~~~------~~~~~~~---------------   78 (135)
T 3emx_A           30 LQG-DAILAVYSKTCPHCHRDWPQLIQASKEV---------DVPIVMFIWGS------LIGEREL---------------   78 (135)
T ss_dssp             HTS-SEEEEEEETTCHHHHHHHHHHHHHHTTC---------CSCEEEEEECT------TCCHHHH---------------
T ss_pred             hCC-cEEEEEECCcCHhhhHhChhHHHHHHHC---------CCEEEEEECCC------chhhhhh---------------
Confidence            355 899999999999999998  77776654         27788888622      1111111               


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                         |  ....+.+.|++.++|++++++ +|+++.+
T Consensus        79 ---d--~~~~l~~~~~v~~~Pt~~~~~-~G~~v~~  107 (135)
T 3emx_A           79 ---S--AARLEMNKAGVEGTPTLVFYK-EGRIVDK  107 (135)
T ss_dssp             ---H--HHHHHHHHHTCCSSSEEEEEE-TTEEEEE
T ss_pred             ---h--hhHHHHHHcCCceeCeEEEEc-CCEEEEE
Confidence               1  134578889999999888887 9998764

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.87  E-value=5.8e-09  Score=90.59  Aligned_cols=69  Identities=13%  Similarity=0.148  Sum_probs=55.6

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||++|+.+.  |.+++++++       .++.++.|++        |+.                    
T Consensus        30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~-------~~v~~~~vd~--------d~~--------------------   74 (119)
T 1w4v_A           30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQH-------GKVVMAKVDI--------DDH--------------------   74 (119)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TSSEEEEEET--------TTT--------------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCeEEEEEeC--------CCC--------------------
Confidence            579999999999999999998  888888774       2588888874        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|++.++|+++++ ++|+++.+
T Consensus        75 -------~~l~~~~~v~~~Pt~~~~-~~G~~~~~  100 (119)
T 1w4v_A           75 -------TDLAIEYEVSAVPTVLAM-KNGDVVDK  100 (119)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------HHHHHHcCCCcccEEEEE-eCCcEEEE
Confidence                   136677999999999999 89998753

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=98.86  E-value=1.5e-09  Score=97.00  Aligned_cols=74  Identities=12%  Similarity=0.141  Sum_probs=48.8

Q ss_pred             ccccCCCEEEEEEecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311          341 IEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH  420 (570)
Q Consensus       341 ls~LkGKvVlL~FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f  420 (570)
                      ++..+||+|+|+|||+||+||+.+.  ..++++.+       .+.|+++.+ |     .|+                   
T Consensus        35 l~~~~~k~vvv~F~a~wC~~C~~~~--p~l~~l~~-------~~~v~~~~v-d-----~~~-------------------   80 (133)
T 3cxg_A           35 FSSTQNSSIVIKFGAVWCKPCNKIK--EYFKNQLN-------YYYVTLVDI-D-----VDI-------------------   80 (133)
T ss_dssp             HTC-CCSEEEEEEECTTCHHHHHTH--HHHHGGGG-------TEECEEEEE-E-----TTT-------------------
T ss_pred             HHhcCCCEEEEEEECCCCHHHHHHH--HHHHHHHH-------hcCEEEEEE-e-----ccc-------------------
Confidence            4556799999999999999999975  23344431       234555544 1     111                   


Q ss_pred             ccccChHHHHHHHHhCCCCCCceEEEE-CCCCc--EEcc
Q 008311          421 PTLIDRAVIRYVKDVWHFKNKPILVVL-DPQGR--VVSP  456 (570)
Q Consensus       421 P~l~D~~~~~~L~~~y~V~~IPtlVVL-DpqGk--Vv~~  456 (570)
                              ...+.+.|+++++|+++++ |++|+  ++.+
T Consensus        81 --------~~~l~~~~~v~~~Pt~~~~~~~~g~g~~~~~  111 (133)
T 3cxg_A           81 --------HPKLNDQHNIKALPTFEFYFNLNNEWVLVHT  111 (133)
T ss_dssp             --------CHHHHHHTTCCSSSEEEEEEEETTEEEEEEE
T ss_pred             --------hHHHHHhcCCCCCCEEEEEEecCCCeEEEEE
Confidence                    0236678999999999999 45665  6653

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=98.86  E-value=3.6e-09  Score=91.88  Aligned_cols=70  Identities=11%  Similarity=0.056  Sum_probs=53.0

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      .+||+|+++|||+|||||+.+.  +.+++++++        ++.++.|.+       .++                    
T Consensus        35 ~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--------~~~~~~vd~-------~~~--------------------   79 (124)
T 1faa_A           35 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--------DVIFLKLDC-------NQE--------------------   79 (124)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEEC-------SST--------------------
T ss_pred             cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC--------CCEEEEEec-------Ccc--------------------
Confidence            3789999999999999999998  888887763        467777764       111                    


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                         +    ..+.+.|+++++|++ +++++|+++.+
T Consensus        80 ---~----~~~~~~~~v~~~Pt~-~~~~~G~~~~~  106 (124)
T 1faa_A           80 ---N----KTLAKELGIRVVPTF-KILKENSVVGE  106 (124)
T ss_dssp             ---T----HHHHHHHCCSSSSEE-EEEETTEEEEE
T ss_pred             ---h----HHHHHHcCCCeeeEE-EEEeCCcEEEE
Confidence               1    235677999999995 45589998754

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.85  E-value=8.6e-09  Score=86.34  Aligned_cols=70  Identities=14%  Similarity=0.147  Sum_probs=56.0

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      -+||+|+|+|||+||++|+.+.  |.++.++++       +++.++.|++        |+.                   
T Consensus        19 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~v~~--------~~~-------------------   64 (109)
T 3tco_A           19 RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK-------GKAVFGRLNV--------DEN-------------------   64 (109)
T ss_dssp             HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTSEEEEEET--------TTC-------------------
T ss_pred             hcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhC-------CCceEEEEcc--------ccC-------------------
Confidence            3689999999999999999998  888888874       2577777764        111                   


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                              ..+.+.|++.++|+++++ ++|+++.+
T Consensus        65 --------~~~~~~~~i~~~Pt~~~~-~~g~~~~~   90 (109)
T 3tco_A           65 --------QKIADKYSVLNIPTTLIF-VNGQLVDS   90 (109)
T ss_dssp             --------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             --------HHHHHhcCcccCCEEEEE-cCCcEEEe
Confidence                    135667999999999999 99998764

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.85  E-value=7.2e-09  Score=87.49  Aligned_cols=68  Identities=12%  Similarity=0.244  Sum_probs=54.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++|+|+|+|||+||++|+.+.  +.++.++++       +++.++.|++        |+.                    
T Consensus        21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~-------~~v~~~~vd~--------~~~--------------------   65 (111)
T 3gnj_A           21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYE-------ESFGFYYVDV--------EEE--------------------   65 (111)
T ss_dssp             SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTT-------TTSEEEEEET--------TTC--------------------
T ss_pred             cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcC-------CceEEEEEEC--------CcC--------------------
Confidence            579999999999999999998  888888774       2588888875        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|+++++|+++++ ++|+++.
T Consensus        66 -------~~l~~~~~v~~~Pt~~~~-~~g~~~~   90 (111)
T 3gnj_A           66 -------KTLFQRFSLKGVPQILYF-KDGEYKG   90 (111)
T ss_dssp             -------HHHHHHTTCCSSCEEEEE-ETTEEEE
T ss_pred             -------hhHHHhcCCCcCCEEEEE-ECCEEEE
Confidence                   135677999999999999 7898874

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=98.84  E-value=1.1e-08  Score=85.53  Aligned_cols=69  Identities=17%  Similarity=0.180  Sum_probs=55.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+||++||++|+.+.  |.++.++++       +++.++.|++        +..                    
T Consensus        19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~v~~--------~~~--------------------   63 (107)
T 2i4a_A           19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA-------GKVTVAKVNI--------DDN--------------------   63 (107)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHT-------TSEEEEEEET--------TTC--------------------
T ss_pred             CCCEEEEEEECCCChhHHHHhHHHHHHHHHhC-------CcEEEEEEEC--------CCC--------------------
Confidence            579999999999999999998  888888874       2588888875        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|++.++|+++++ ++|+++.+
T Consensus        64 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~~   89 (107)
T 2i4a_A           64 -------PETPNAYQVRSIPTLMLV-RDGKVIDK   89 (107)
T ss_dssp             -------CHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------HHHHHhcCCCccCEEEEE-eCCEEEEE
Confidence                   025667999999999999 99998753

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.84  E-value=5.7e-09  Score=87.26  Aligned_cols=69  Identities=13%  Similarity=0.105  Sum_probs=54.3

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      .+||+|+|+|||+||++|+.+.  +.++.++++        ++.++.|+.        |+.                   
T Consensus        18 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--------~~~~~~vd~--------~~~-------------------   62 (105)
T 3m9j_A           18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS--------NVIFLEVDV--------DDC-------------------   62 (105)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHST--------TSEEEEEET--------TTC-------------------
T ss_pred             cCCCeEEEEEECCCChhhHHHHHHHHHHHHHcc--------CeEEEEEEh--------hhh-------------------
Confidence            4689999999999999999998  888887763        377777764        211                   


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                              ..+.+.|+++++|+++++ ++|+++.+
T Consensus        63 --------~~~~~~~~v~~~Pt~~~~-~~g~~~~~   88 (105)
T 3m9j_A           63 --------QDVASESEVKSMPTFQFF-KKGQKVGE   88 (105)
T ss_dssp             --------HHHHHHTTCCBSSEEEEE-ETTEEEEE
T ss_pred             --------HHHHHHcCCCcCcEEEEE-ECCeEEEE
Confidence                    125677999999999999 78888754

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.83  E-value=6.4e-09  Score=90.26  Aligned_cols=68  Identities=9%  Similarity=0.125  Sum_probs=53.6

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||++|+.+.  |.++.++++        ++.++.|++        |+.                    
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~--------~v~~~~vd~--------~~~--------------------   72 (114)
T 2oe3_A           29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP--------DVRFVKCDV--------DES--------------------   72 (114)
T ss_dssp             HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT--------TSEEEEEET--------TTC--------------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--------CCEEEEEEC--------CCC--------------------
Confidence            689999999999999999998  888887763        377887774        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.++|+++++|+++++ ++|+++.+
T Consensus        73 -------~~l~~~~~v~~~Pt~~~~-~~G~~~~~   98 (114)
T 2oe3_A           73 -------PDIAKECEVTAMPTFVLG-KDGQLIGK   98 (114)
T ss_dssp             -------HHHHHHTTCCSBSEEEEE-ETTEEEEE
T ss_pred             -------HHHHHHCCCCcccEEEEE-eCCeEEEE
Confidence                   125677999999998876 89998753

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.82  E-value=3.4e-09  Score=93.77  Aligned_cols=70  Identities=16%  Similarity=0.172  Sum_probs=53.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||++|+.+.  |.++++++++    .+.++.++.|.+        ++                     
T Consensus        33 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~----~~~~v~~~~vd~--------~~---------------------   79 (140)
T 2dj1_A           33 DKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKD----NDPPIAVAKIDA--------TS---------------------   79 (140)
T ss_dssp             TCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHS----SSSCCEEEEECT--------TT---------------------
T ss_pred             cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhc----cCCceEEEEEeC--------cc---------------------
Confidence            589999999999999999998  9999999863    123466666543        11                     


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                        +    ..+.+.|+++++|+++++ ++|++.
T Consensus        80 --~----~~~~~~~~v~~~Pt~~~~-~~G~~~  104 (140)
T 2dj1_A           80 --A----SMLASKFDVSGYPTIKIL-KKGQAV  104 (140)
T ss_dssp             --C----HHHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred             --c----HHHHHHCCCCccCeEEEE-ECCcEE
Confidence              0    236678999999999999 789854

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=98.82  E-value=2.4e-09  Score=99.45  Aligned_cols=95  Identities=13%  Similarity=0.131  Sum_probs=62.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||+||+...  +.+. .++.+..     +..+|.|.+ |.     +..                    
T Consensus        43 ~~KpVlV~F~A~WC~~Ck~m~p~~~~~-~~~~~~~-----~~~fv~V~v-D~-----e~~--------------------   90 (151)
T 3ph9_A           43 SKKPLMVIHHLEDCQYSQALKKVFAQN-EEIQEMA-----QNKFIMLNL-MH-----ETT--------------------   90 (151)
T ss_dssp             HTCCEEEEECCTTCHHHHHHHHHHHHC-HHHHHHH-----HHTCEEEEE-SS-----CCS--------------------
T ss_pred             cCCcEEEEEECCCCHhHHHHHHHHhcC-HHHHHHh-----hcCeEEEEe-cC-----Cch--------------------
Confidence            689999999999999999976  3332 1221100     122566665 10     000                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhh
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKE  483 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e  483 (570)
                        +      +...|++.++|+++++|++|+++.+    .+-..+...|++.+...+.++++
T Consensus        91 --~------~~~~~~v~~~PT~~f~~~~G~~v~~----~~G~~~~~~~~~~~~~~~~ll~~  139 (151)
T 3ph9_A           91 --D------KNLSPDGQYVPRIMFVDPSLTVRAD----IAGRYSNRLYTYEPRDLPLLIEN  139 (151)
T ss_dssp             --C------GGGCTTCCCSSEEEEECTTSCBCTT----CCCSCTTSTTCCCGGGHHHHHHH
T ss_pred             --h------hHhhcCCCCCCEEEEECCCCCEEEE----EeCCcCCcccccchhhHHHHHHH
Confidence              1      1234788999999999999999874    12223456788988888877754

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=98.82  E-value=8.9e-09  Score=87.25  Aligned_cols=69  Identities=16%  Similarity=0.195  Sum_probs=56.0

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+||++||++|+.+.  |.++.++++       .++.++.|++        |..                    
T Consensus        24 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~v~~~~v~~--------~~~--------------------   68 (115)
T 1thx_A           24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYS-------DRLKVVKLEI--------DPN--------------------   68 (115)
T ss_dssp             CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT-------TTCEEEEEES--------TTC--------------------
T ss_pred             CCceEEEEEECCCCHHHHHhHHHHHHHHHHhC-------CcEEEEEEEc--------CCC--------------------
Confidence            589999999999999999998  888888774       2488888875        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|++.++|+++++ ++|+++.+
T Consensus        69 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~~   94 (115)
T 1thx_A           69 -------PTTVKKYKVEGVPALRLV-KGEQILDS   94 (115)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------HHHHHHcCCCceeEEEEE-cCCEEEEE
Confidence                   125677999999999999 99998763

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=98.82  E-value=4.2e-09  Score=93.42  Aligned_cols=69  Identities=17%  Similarity=0.262  Sum_probs=55.1

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||++|+.+.  |.++.++++       +++.++.|++        |+.                  + 
T Consensus        39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-------~~v~~~~vd~--------~~~------------------~-   84 (128)
T 2o8v_B           39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQ-------GKLTVAKLNI--------DQN------------------P-   84 (128)
T ss_dssp             CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTT-------TTEEEEEEET--------TTC------------------C-
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc-------CCeEEEEEEC--------CCC------------------H-
Confidence            589999999999999999998  888888774       2588888875        111                  0 


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                              .+.+.|++.++|+++++ ++|+++.+
T Consensus        85 --------~l~~~~~v~~~Pt~~~~-~~G~~~~~  109 (128)
T 2o8v_B           85 --------GTAPKYGIRGIPTLLLF-KNGEVAAT  109 (128)
T ss_dssp             --------TTSGGGTCCSSSEEEEE-ETTEEEEE
T ss_pred             --------HHHHHcCCCccCEEEEE-eCCEEEEE
Confidence                    14457899999999999 89998753

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=98.81  E-value=8.1e-09  Score=92.85  Aligned_cols=70  Identities=6%  Similarity=0.071  Sum_probs=55.9

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      -+||+|+|+|||+||++|+.+.  |.+++++++       .++.++.|++        |+.                   
T Consensus        53 ~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~-------~~~~~~~vd~--------~~~-------------------   98 (148)
T 3p2a_A           53 QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERA-------GKVRFVKVNT--------EAE-------------------   98 (148)
T ss_dssp             TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC-------------------
T ss_pred             hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcC-------CceEEEEEEC--------cCC-------------------
Confidence            4789999999999999999998  999998874       2577787764        211                   


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                              ..+.+.|++.++|+++++ ++|+++.+
T Consensus        99 --------~~l~~~~~v~~~Pt~~~~-~~G~~~~~  124 (148)
T 3p2a_A           99 --------PALSTRFRIRSIPTIMLY-RNGKMIDM  124 (148)
T ss_dssp             --------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             --------HHHHHHCCCCccCEEEEE-ECCeEEEE
Confidence                    135678999999999998 59998753

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.81  E-value=1.1e-08  Score=87.60  Aligned_cols=68  Identities=12%  Similarity=0.073  Sum_probs=53.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||++|+.+.  |.+++++++        ++.++.|++        +..                    
T Consensus        25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--------~v~~~~vd~--------~~~--------------------   68 (112)
T 1syr_A           25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--------KMVFIKVDV--------DEV--------------------   68 (112)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTT--------------------
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--------CCEEEEEEC--------CCC--------------------
Confidence            689999999999999999998  888887763        478888874        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|++.++|+++++ ++|+++.+
T Consensus        69 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~~   94 (112)
T 1syr_A           69 -------SEVTEKENITSMPTFKVY-KNGSSVDT   94 (112)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------HHHHHHcCCCcccEEEEE-ECCcEEEE
Confidence                   135667999999997766 69998753

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.81  E-value=1.2e-08  Score=85.25  Aligned_cols=70  Identities=16%  Similarity=0.122  Sum_probs=54.5

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      .+||+|+++||++||++|+.+.  |.++.++++       .++.++.|++        |+                    
T Consensus        18 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~v~~--------~~--------------------   62 (106)
T 1xwb_A           18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFA-------DNVVVLKVDV--------DE--------------------   62 (106)
T ss_dssp             HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTEEEEEEET--------TT--------------------
T ss_pred             cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhC-------CCeEEEEEec--------cc--------------------
Confidence            4789999999999999999998  888887773       3577888774        21                    


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                         +    ..+.+.|+++++|+++++ ++|+++.+
T Consensus        63 ---~----~~~~~~~~v~~~Pt~~~~-~~G~~~~~   89 (106)
T 1xwb_A           63 ---C----EDIAMEYNISSMPTFVFL-KNGVKVEE   89 (106)
T ss_dssp             ---C----HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             ---h----HHHHHHcCCCcccEEEEE-cCCcEEEE
Confidence               0    135677999999997766 78988753

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.81  E-value=7.9e-09  Score=87.57  Aligned_cols=68  Identities=12%  Similarity=0.117  Sum_probs=53.7

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      ||+|+|+||++||++|+.+.  |.++.++++       +++.++.|++        |.                      
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~--------~~----------------------   66 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYA-------GKVIFLKVDV--------DA----------------------   66 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTSEEEEEET--------TT----------------------
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-------CCeEEEEEEC--------Cc----------------------
Confidence            89999999999999999998  888888774       2588888874        21                      


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                       +    ..+.+.|+++++|+++++ ++|+++.+
T Consensus        67 -~----~~~~~~~~v~~~Pt~~~~-~~G~~~~~   93 (112)
T 1ep7_A           67 -V----AAVAEAAGITAMPTFHVY-KDGVKADD   93 (112)
T ss_dssp             -T----HHHHHHHTCCBSSEEEEE-ETTEEEEE
T ss_pred             -h----HHHHHHcCCCcccEEEEE-ECCeEEEE
Confidence             0    135667899999997766 89998753

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=98.81  E-value=6.1e-09  Score=90.80  Aligned_cols=69  Identities=12%  Similarity=0.087  Sum_probs=54.0

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||++|+.+.  |.++++++.        ++.++.|++        |+.                    
T Consensus        22 ~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~--------~v~~~~vd~--------~~~--------------------   65 (118)
T 2f51_A           22 APGLVLVDFFATWCGPCQRLGQILPSIAEANK--------DVTFIKVDV--------DKN--------------------   65 (118)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTC--------------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--------CeEEEEEEC--------CCC--------------------
Confidence            489999999999999999988  888877662        578888875        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECC---CCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDP---QGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDp---qGkVv~~  456 (570)
                             ..+.+.|+++++|++++++.   +|+++.+
T Consensus        66 -------~~~~~~~~i~~~Pt~~~~~~~~~~G~~~~~   95 (118)
T 2f51_A           66 -------GNAADAYGVSSIPALFFVKKEGNEIKTLDQ   95 (118)
T ss_dssp             -------HHHHHHTTCCSSSEEEEEEEETTEEEEEEE
T ss_pred             -------HHHHHhcCCCCCCEEEEEeCCCCcceEEEe
Confidence                   12567799999999999976   4777653

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.81  E-value=9.1e-09  Score=88.85  Aligned_cols=67  Identities=9%  Similarity=0.170  Sum_probs=53.1

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+++||++||++|+.+.  |.++.++++        ++.++.|++        |+.                    
T Consensus        33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--------~~~~~~vd~--------~~~--------------------   76 (122)
T 2vlu_A           33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFP--------NAVFLKVDV--------DEL--------------------   76 (122)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTC--------------------
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--------CcEEEEEEC--------CCC--------------------
Confidence            589999999999999999998  888887763        377887774        210                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|+++++|+++++ ++|+++.
T Consensus        77 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~  101 (122)
T 2vlu_A           77 -------KPIAEQFSVEAMPTFLFM-KEGDVKD  101 (122)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHHcCCCcccEEEEE-eCCEEEE
Confidence                   135677999999997777 8999875

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.80  E-value=1.3e-08  Score=84.95  Aligned_cols=68  Identities=16%  Similarity=0.160  Sum_probs=54.9

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+++|+||++||++|+.+.  |.++.++++       +++.++.|++        +..                    
T Consensus        17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~v~~--------~~~--------------------   61 (109)
T 2yzu_A           17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYE-------GKLLVAKLDV--------DEN--------------------   61 (109)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTB-------TTBEEEEEET--------TTC--------------------
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhh-------CceEEEEEEC--------CCC--------------------
Confidence            579999999999999999998  888888774       2588888874        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|++.++|+++++ ++|+++.
T Consensus        62 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~   86 (109)
T 2yzu_A           62 -------PKTAMRYRVMSIPTVILF-KDGQPVE   86 (109)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HhHHHhCCCCcCCEEEEE-eCCcEee
Confidence                   125667999999999999 8999875

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=98.80  E-value=1e-08  Score=94.30  Aligned_cols=69  Identities=9%  Similarity=0.046  Sum_probs=56.1

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||+||+.+.  |.+++++++       .++.++.|++        |+.                    
T Consensus        63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~-------~~v~~~~vd~--------~~~--------------------  107 (155)
T 2ppt_A           63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLA-------GQVRLAKIDT--------QAH--------------------  107 (155)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT-------TTCEEEEEET--------TTS--------------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHcc-------CCEEEEEEeC--------Ccc--------------------
Confidence            689999999999999999999  999999885       2488888874        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.++|+++++|+++++ ++|+++.+
T Consensus       108 -------~~l~~~~~i~~~Pt~~~~-~~G~~~~~  133 (155)
T 2ppt_A          108 -------PAVAGRHRIQGIPAFILF-HKGRELAR  133 (155)
T ss_dssp             -------THHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------HHHHHHcCCCcCCEEEEE-eCCeEEEE
Confidence                   126678999999999999 79998753

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=98.80  E-value=6.6e-09  Score=89.77  Aligned_cols=67  Identities=4%  Similarity=-0.121  Sum_probs=54.0

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||++|+.+.  |.+++++++       +++.++.|++        +..                    
T Consensus        20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~vd~--------~~~--------------------   64 (122)
T 3aps_A           20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIK-------GKVRAGKVDC--------QAY--------------------   64 (122)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCeEEEEEeC--------cCC--------------------
Confidence            478999999999999999998  999988884       2578888875        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                             ..+.+.|+++++|+++++++.|++
T Consensus        65 -------~~~~~~~~v~~~Pt~~~~~~~~~~   88 (122)
T 3aps_A           65 -------PQTCQKAGIKAYPSVKLYQYERAK   88 (122)
T ss_dssp             -------HHHHHHTTCCSSSEEEEEEEEGGG
T ss_pred             -------HHHHHHcCCCccceEEEEeCCCcc
Confidence                   125667999999999999988874

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.79  E-value=1.4e-08  Score=83.85  Aligned_cols=68  Identities=7%  Similarity=0.044  Sum_probs=54.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+++||++||++|+.+.  +.++.++++        ++.++.|++        |..                    
T Consensus        15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--------~~~~~~v~~--------~~~--------------------   58 (104)
T 2e0q_A           15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYP--------QVGFGKLNS--------DEN--------------------   58 (104)
T ss_dssp             HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTC--------------------
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHHcC--------CceEEEEEC--------CCC--------------------
Confidence            689999999999999999998  888877763        277888874        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+++++|+++++ ++|+++.+
T Consensus        59 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~~   84 (104)
T 2e0q_A           59 -------PDIAARYGVMSLPTVIFF-KDGEPVDE   84 (104)
T ss_dssp             -------HHHHHHTTCCSSCEEEEE-ETTEEEEE
T ss_pred             -------HHHHHhCCccccCEEEEE-ECCeEhhh
Confidence                   125667999999999999 89998753

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=6.1e-09  Score=92.65  Aligned_cols=70  Identities=7%  Similarity=0.025  Sum_probs=52.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++|+|+|+|||+||+||+.+.  |.+++++++      +.++.++.|.+        ++..                   
T Consensus        25 ~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~------~~~v~~~~vd~--------~~~~-------------------   71 (137)
T 2dj0_A           25 KRVTWIVEFFANWSNDCQSFAPIYADLSLKYN------CTGLNFGKVDV--------GRYT-------------------   71 (137)
T ss_dssp             TTSCEEEEECCTTCSTTTTTHHHHHHHHHHHC------SSSCEEEECCT--------TTCH-------------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC------CCCeEEEEEeC--------ccCH-------------------
Confidence            567999999999999999998  999998884      23577777654        2111                   


Q ss_pred             ccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~  456 (570)
                              .+.++|++.      ++|+++++ ++|+++.+
T Consensus        72 --------~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~  102 (137)
T 2dj0_A           72 --------DVSTRYKVSTSPLTKQLPTLILF-QGGKEAMR  102 (137)
T ss_dssp             --------HHHHHTTCCCCSSSSCSSEEEEE-SSSSEEEE
T ss_pred             --------HHHHHccCcccCCcCCCCEEEEE-ECCEEEEE
Confidence                    134456666      99999999 78998754

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=98.77  E-value=2.9e-08  Score=108.98  Aligned_cols=72  Identities=6%  Similarity=-0.031  Sum_probs=57.2

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      ||+|+|+|||+||+||+.++  +.++++++++    .+.++.|+.|++        +.+                     
T Consensus        30 ~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~----~~~~v~~~~VD~--------d~d---------------------   76 (519)
T 3t58_A           30 SSAWAVEFFASWCGHAIAFAPTWKELANDVKD----WRPALNLAVLDC--------AEE---------------------   76 (519)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHHHHGG----GTTTEEEEEEET--------TSG---------------------
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHhhC----cCCcEEEEEEEC--------Ccc---------------------
Confidence            59999999999999999999  9999999963    134688888875        111                     


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECC---CCcEE
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDP---QGRVV  454 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDp---qGkVv  454 (570)
                          ....+.+.|+|+++|+++++++   +|+.+
T Consensus        77 ----~~~~l~~~~~V~~~PTl~~f~~g~~~G~~~  106 (519)
T 3t58_A           77 ----TNSAVCREFNIAGFPTVRFFQAFTKNGSGA  106 (519)
T ss_dssp             ----GGHHHHHHTTCCSBSEEEEECTTCCSCCCE
T ss_pred             ----ccHHHHHHcCCcccCEEEEEcCcccCCCce
Confidence                0124677899999999999997   66643

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.77  E-value=9.7e-09  Score=88.09  Aligned_cols=69  Identities=10%  Similarity=0.130  Sum_probs=52.6

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      .++|+++++|||+||++|+...  |.++.+++        .++.++.|.+        ++                    
T Consensus        17 ~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~--------~~v~~~~vd~--------~~--------------------   60 (110)
T 2l6c_A           17 EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARA--------PQVAISSVDS--------EA--------------------   60 (110)
T ss_dssp             TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTC--------TTSCEEEEEG--------GG--------------------
T ss_pred             HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHC--------CCcEEEEEcC--------cC--------------------
Confidence            3579999999999999999987  66655443        2577777764        21                    


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                         +    ..+.+.|+++++|+++++ ++|+++.+
T Consensus        61 ---~----~~l~~~~~v~~~Pt~~~~-~~G~~v~~   87 (110)
T 2l6c_A           61 ---R----PELMKELGFERVPTLVFI-RDGKVAKV   87 (110)
T ss_dssp             ---C----HHHHHHTTCCSSCEEEEE-ESSSEEEE
T ss_pred             ---C----HHHHHHcCCcccCEEEEE-ECCEEEEE
Confidence               0    125677999999999999 89998764

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=98.76  E-value=2.1e-08  Score=83.53  Aligned_cols=69  Identities=10%  Similarity=0.129  Sum_probs=54.0

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+++++||++||++|+.+.  |.++.++++       .++.++.|++        ++.                    
T Consensus        17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~v~~--------~~~--------------------   61 (105)
T 1fb6_A           17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS-------GKIAVYKLNT--------DEA--------------------   61 (105)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCcEEEEEECCCChHHHHHHHHHHHHHHHhc-------CceEEEEEcC--------cch--------------------
Confidence            479999999999999999998  888888774       2477787774        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+++++|+++++ ++|+++.+
T Consensus        62 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~~   87 (105)
T 1fb6_A           62 -------PGIATQYNIRSIPTVLFF-KNGERKES   87 (105)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------HHHHHhCCCCcccEEEEE-eCCeEEEE
Confidence                   135677999999998877 79998753

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.76  E-value=1.7e-08  Score=95.98  Aligned_cols=84  Identities=8%  Similarity=0.020  Sum_probs=53.4

Q ss_pred             eeccccCCCEEEEEEecCCCHHhHHHH-----HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCC
Q 008311          339 VNIEVLRRKNVLLLISDLDISQEELSI-----LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSM  413 (570)
Q Consensus       339 Vsls~LkGKvVlL~FwAsWCpPCr~e~-----L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~M  413 (570)
                      +.....+||+|+|+|||+||+||+...     ..++-+.+++       +|.+|-|..        |+..+--..+    
T Consensus        32 ~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~-------~fv~ikVD~--------de~~~l~~~y----   92 (173)
T 3ira_A           32 FEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE-------AFVSIKVDR--------EERPDIDNIY----   92 (173)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH-------HCEEEEEET--------TTCHHHHHHH----
T ss_pred             HHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHh-------cCceeeeCC--------cccCcHHHHH----
Confidence            344445799999999999999999854     2345555531       354444432        2211111111    


Q ss_pred             CceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          414 PWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       414 PW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                                     ...+...+++.++|+++++||+|+++..
T Consensus        93 ---------------~~~~q~~~gv~g~Pt~v~l~~dG~~v~~  120 (173)
T 3ira_A           93 ---------------MTVCQIILGRGGWPLNIIMTPGKKPFFA  120 (173)
T ss_dssp             ---------------HHHHHHHHSCCCSSEEEEECTTSCEEEE
T ss_pred             ---------------HHHHHHHcCCCCCcceeeECCCCCceee
Confidence                           1122334799999999999999999874

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.76  E-value=1.5e-08  Score=85.39  Aligned_cols=72  Identities=10%  Similarity=0.085  Sum_probs=52.9

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++|+|+|+|||+||++|+.+.  +.++.++++.    ...++.++.|.+        ++.                    
T Consensus        20 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~~~~~vd~--------~~~--------------------   67 (111)
T 3uvt_A           20 AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFP----GLAGVKIAEVDC--------TAE--------------------   67 (111)
T ss_dssp             HSSEEEEEEECSSCHHHHHHHHHHHHHHTCCCC----C-CCEEEEEEET--------TTC--------------------
T ss_pred             cCCcEEEEEECCCChhHHHhhHHHHHHHHHhhc----cCCceEEEEEec--------ccc--------------------
Confidence            489999999999999999988  7777776542    123566776663        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+++++|+++++ ++|+++.+
T Consensus        68 -------~~l~~~~~v~~~Pt~~~~-~~g~~~~~   93 (111)
T 3uvt_A           68 -------RNICSKYSVRGYPTLLLF-RGGKKVSE   93 (111)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------HhHHHhcCCCcccEEEEE-eCCcEEEe
Confidence                   125677999999998888 78887643

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.76  E-value=3e-08  Score=86.84  Aligned_cols=72  Identities=10%  Similarity=0.041  Sum_probs=54.1

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+|+|+|+|||+||+||+.+.  +.++.++++..  ..+.++.++.|..        ++.                    
T Consensus        32 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~--~~~~~v~~~~vd~--------~~~--------------------   81 (127)
T 3h79_A           32 PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQK--RNHLTFVAARIDG--------EKY--------------------   81 (127)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTS--TTTTTEEEEEEET--------TTC--------------------
T ss_pred             CCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhc--ccCCCeEEEEEEc--------ccc--------------------
Confidence            489999999999999999998  88888887531  1124566666653        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                             ..+.++|+|+++|+++++++.|++
T Consensus        82 -------~~l~~~~~v~~~Pt~~~~~~g~~~  105 (127)
T 3h79_A           82 -------PDVIERMRVSGFPTMRYYTRIDKQ  105 (127)
T ss_dssp             -------HHHHHHTTCCSSSEEEEECSSCSS
T ss_pred             -------HhHHHhcCCccCCEEEEEeCCCCC
Confidence                   136678999999999999887764

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.75  E-value=1.5e-08  Score=89.77  Aligned_cols=67  Identities=9%  Similarity=0.080  Sum_probs=53.5

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||++|+.+.  |.++.++++        ++.++.|++        |+.                    
T Consensus        36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--------~v~~~~vd~--------d~~--------------------   79 (125)
T 1r26_A           36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--------TVKFAKVDA--------DNN--------------------   79 (125)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--------TSEEEEEET--------TTC--------------------
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--------CCEEEEEEC--------CCC--------------------
Confidence            689999999999999999998  888877762        478888874        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|++.++|+++++ ++|+++.
T Consensus        80 -------~~l~~~~~v~~~Pt~~i~-~~G~~~~  104 (125)
T 1r26_A           80 -------SEIVSKCRVLQLPTFIIA-RSGKMLG  104 (125)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHHcCCCcccEEEEE-eCCeEEE
Confidence                   126677999999997777 8999875

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.75  E-value=1.1e-08  Score=89.37  Aligned_cols=66  Identities=6%  Similarity=-0.020  Sum_probs=53.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+|+|+|+|||+||++|+.+.  |.+++++++       +.+.++.|++        |+.                    
T Consensus        34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~-------~~~~~~~vd~--------~~~--------------------   78 (130)
T 2dml_A           34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALK-------DVVKVGAVNA--------DKH--------------------   78 (130)
T ss_dssp             CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTT-------TTSEEEEEET--------TTC--------------------
T ss_pred             CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhc-------CceEEEEEeC--------CCC--------------------
Confidence            479999999999999999998  888888874       2477777764        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGR  452 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGk  452 (570)
                             ..+.+.|+++++|+++++++.|+
T Consensus        79 -------~~l~~~~~v~~~Pt~~~~~~~~~  101 (130)
T 2dml_A           79 -------QSLGGQYGVQGFPTIKIFGANKN  101 (130)
T ss_dssp             -------HHHHHHHTCCSSSEEEEESSCTT
T ss_pred             -------HHHHHHcCCCccCEEEEEeCCCC
Confidence                   13567799999999999999988

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.74  E-value=1.1e-07  Score=97.75  Aligned_cols=169  Identities=11%  Similarity=0.120  Sum_probs=101.1

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      .+.++++|++.||++|+...  +.++.++++.       .+-+++|..        +..  .                  
T Consensus       135 ~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~-------~i~f~~vd~--------~~~--~------------------  179 (361)
T 3uem_A          135 IKTHILLFLPKSVSDYDGKLSNFKTAAESFKG-------KILFIFIDS--------DHT--D------------------  179 (361)
T ss_dssp             CCEEEEEECCSSSSSHHHHHHHHHHHHGGGTT-------TCEEEEECT--------TSG--G------------------
T ss_pred             CCcEEEEEEeCCchhHHHHHHHHHHHHHHccC-------ceEEEEecC--------ChH--H------------------
Confidence            35789999999999999988  8888888852       355565542        210  0                  


Q ss_pred             cChHHHHHHHHhCCCCC--CceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhh---c-------------C
Q 008311          424 IDRAVIRYVKDVWHFKN--KPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKE---E-------------T  485 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~--IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e---~-------------~  485 (570)
                           ...+.+.||+++  +|++++++..+....         +....-+++.....+...+   .             .
T Consensus       180 -----~~~~~~~fgi~~~~~P~~~~~~~~~~~~k---------y~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~  245 (361)
T 3uem_A          180 -----NQRILEFFGLKKEECPAVRLITLEEEMTK---------YKPESEELTAERITEFCHRFLEGKIKPHLMSQELPED  245 (361)
T ss_dssp             -----GHHHHHHTTCCTTTCSEEEEEECC--CCE---------ECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTT
T ss_pred             -----HHHHHHHcCCCccCCccEEEEEcCCcccc---------cCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcc
Confidence                 123566789987  999999987443211         0001112333333222211   0             1


Q ss_pred             ccccccccCCCccccccc-cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCC--CEEEEEEecCCchhhhhhccccccc
Q 008311          486 WRLELLVDGIDPLVLDWI-KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARI--PLEMVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       486 w~~~ll~d~~d~~i~~~~-~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~--~fEiv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      |....+..-.+......+ ..+|.+.++|.+. |++|+++.|.+.+++++.+.  ++-++.|..+...   .+.+++-+.
T Consensus       246 ~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~---~~~~~v~~~  322 (361)
T 3uem_A          246 WDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE---VEAVKVHSF  322 (361)
T ss_dssp             TTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB---CSSCCCCSS
T ss_pred             cccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc---hhhcCCccc
Confidence            111111000000111112 4789999999999 99999999999999987433  4666666655544   345788889


Q ss_pred             ccccc
Q 008311          562 KSLVT  566 (570)
Q Consensus       562 ~~~~~  566 (570)
                      |++++
T Consensus       323 Pt~~~  327 (361)
T 3uem_A          323 PTLKF  327 (361)
T ss_dssp             SEEEE
T ss_pred             CeEEE
Confidence            99865

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.74  E-value=2.1e-08  Score=83.38  Aligned_cols=69  Identities=12%  Similarity=0.126  Sum_probs=53.4

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      .+||+|+++||++|||+|+.+.  |.++.++++        ++.++.|++        ++.                   
T Consensus        17 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--------~~~~~~v~~--------~~~-------------------   61 (104)
T 2vim_A           17 NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--------EVEFAKVDV--------DQN-------------------   61 (104)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTC-------------------
T ss_pred             cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC--------CCEEEEEec--------cCC-------------------
Confidence            4689999999999999999988  877777652        577888874        210                   


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                              ..+.+.|++.++|++++++ +|+++.+
T Consensus        62 --------~~~~~~~~v~~~Pt~~~~~-~g~~~~~   87 (104)
T 2vim_A           62 --------EEAAAKYSVTAMPTFVFIK-DGKEVDR   87 (104)
T ss_dssp             --------HHHHHHTTCCSSSEEEEEE-TTEEEEE
T ss_pred             --------HHHHHHcCCccccEEEEEe-CCcEEEE
Confidence                    1256679999999988775 8988754

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=98.73  E-value=1.7e-08  Score=90.35  Aligned_cols=68  Identities=16%  Similarity=0.170  Sum_probs=54.4

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||++|+.+.  |.++.++++       +++.++.|.+        |+.                    
T Consensus        23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~-------~~v~~~~vd~--------~~~--------------------   67 (140)
T 3hz4_A           23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYG-------SSAVFGRINI--------ATN--------------------   67 (140)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT-------TTSEEEEEET--------TTC--------------------
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHhC-------CceEEEEEEC--------CcC--------------------
Confidence            389999999999999999998  999998885       2488888874        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|+++++|+++++ ++|+++.
T Consensus        68 -------~~l~~~~~v~~~Pt~~~~-~~G~~~~   92 (140)
T 3hz4_A           68 -------PWTAEKYGVQGTPTFKFF-CHGRPVW   92 (140)
T ss_dssp             -------HHHHHHHTCCEESEEEEE-ETTEEEE
T ss_pred             -------HhHHHHCCCCcCCEEEEE-eCCcEEE
Confidence                   125667899999998888 7898874

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.72  E-value=2.4e-08  Score=89.41  Aligned_cols=88  Identities=11%  Similarity=0.044  Sum_probs=60.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||+||+.+.  |.++.+++.        ++.++.|.+        +..                  + 
T Consensus        29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~--------~v~~~~vd~--------~~~------------------~-   73 (135)
T 2dbc_A           29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP--------ETKFVKAIV--------NSC------------------I-   73 (135)
T ss_dssp             SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS--------SEEEEEECC--------SSS------------------C-
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--------CcEEEEEEh--------hcC------------------c-
Confidence            468999999999999999998  888877652        455666553        110                  0 


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhh
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKE  483 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e  483 (570)
                                 +.|+++++|++++++ +|+++.+-.-  ...+|..  -|+....+.++++
T Consensus        74 -----------~~~~i~~~Pt~~~~~-~G~~v~~~~G--~~~~~~~--~~~~~~l~~~l~~  118 (135)
T 2dbc_A           74 -----------EHYHDNCLPTIFVYK-NGQIEGKFIG--IIECGGI--NLKLEELEWKLSE  118 (135)
T ss_dssp             -----------SSCCSSCCSEEEEES-SSSCSEEEES--TTTTTCT--TCCHHHHHHHHHH
T ss_pred             -----------ccCCCCCCCEEEEEE-CCEEEEEEEe--EEeeCCC--cCCHHHHHHHHHH
Confidence                       358999999999997 9998764221  1123332  3566666666655

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.72  E-value=1.5e-08  Score=87.14  Aligned_cols=69  Identities=10%  Similarity=0.090  Sum_probs=51.0

Q ss_pred             ccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311          343 VLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH  420 (570)
Q Consensus       343 ~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f  420 (570)
                      ..+||+|+++|||+||++|+.+.  +.++++++         ++.++.|++        |+                   
T Consensus        30 ~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---------~~~~~~vd~--------~~-------------------   73 (117)
T 2xc2_A           30 QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---------DAIFVKVDV--------DK-------------------   73 (117)
T ss_dssp             HTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---------SSEEEEEET--------TT-------------------
T ss_pred             hCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---------CcEEEEEEC--------Cc-------------------
Confidence            34799999999999999999987  66655432         466666663        21                   


Q ss_pred             ccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                          +    ..+.+.|+++++|+++++ ++|+++.+
T Consensus        74 ----~----~~~~~~~~v~~~Pt~~~~-~~G~~~~~  100 (117)
T 2xc2_A           74 ----L----EETARKYNISAMPTFIAI-KNGEKVGD  100 (117)
T ss_dssp             ----S----HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             ----c----HHHHHHcCCCccceEEEE-eCCcEEEE
Confidence                0    135677999999997777 79998753

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.71  E-value=2.6e-08  Score=84.96  Aligned_cols=68  Identities=10%  Similarity=0.141  Sum_probs=53.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+||++||++|+.+.  |.++.++++        ++.++.|++        |..                    
T Consensus        27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--------~~~~~~v~~--------~~~--------------------   70 (118)
T 2vm1_A           27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--------GAIFLKVDV--------DEL--------------------   70 (118)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTS--------------------
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--------CcEEEEEEc--------ccC--------------------
Confidence            489999999999999999998  888877662        477777764        210                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+++++|+++++ ++|+++.+
T Consensus        71 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~~   96 (118)
T 2vm1_A           71 -------KDVAEAYNVEAMPTFLFI-KDGEKVDS   96 (118)
T ss_dssp             -------HHHHHHTTCCSBSEEEEE-ETTEEEEE
T ss_pred             -------HHHHHHcCCCcCcEEEEE-eCCeEEEE
Confidence                   135677999999998888 79998753

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.71  E-value=2.5e-08  Score=84.35  Aligned_cols=68  Identities=12%  Similarity=0.277  Sum_probs=52.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+||++||++|+.+.  |.++.++++        ++.++.|++        |+.                    
T Consensus        25 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--------~v~~~~v~~--------~~~--------------------   68 (113)
T 1ti3_A           25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--------NVTFLKVDV--------DEL--------------------   68 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--------SEEEEEEET--------TTC--------------------
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--------CcEEEEEEc--------ccc--------------------
Confidence            589999999999999999988  877777652        477777764        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|++.++|+++++ ++|+++.+
T Consensus        69 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~~   94 (113)
T 1ti3_A           69 -------KAVAEEWNVEAMPTFIFL-KDGKLVDK   94 (113)
T ss_dssp             -------HHHHHHHHCSSTTEEEEE-ETTEEEEE
T ss_pred             -------HHHHHhCCCCcccEEEEE-eCCEEEEE
Confidence                   125567899999999888 79998754

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=98.71  E-value=3.8e-08  Score=84.44  Aligned_cols=69  Identities=19%  Similarity=0.225  Sum_probs=54.4

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||++|+.+.  |.++.++++       .++.++.|++        +..                    
T Consensus        29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~v~~--------~~~--------------------   73 (121)
T 2i1u_A           29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERA-------TDLTVAKLDV--------DTN--------------------   73 (121)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCeEEEEEEC--------CCC--------------------
Confidence            479999999999999999998  888888774       2588888875        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|++.++|+++++ ++|+++.+
T Consensus        74 -------~~~~~~~~i~~~Pt~~~~-~~g~~~~~   99 (121)
T 2i1u_A           74 -------PETARNFQVVSIPTLILF-KDGQPVKR   99 (121)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------HHHHHhcCCCcCCEEEEE-ECCEEEEE
Confidence                   125677999999999888 59988753

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=98.71  E-value=8e-08  Score=97.88  Aligned_cols=67  Identities=10%  Similarity=0.051  Sum_probs=53.5

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||+||+.+.  +.+++++++       ..+.|+.|.+        |.+.                   
T Consensus        34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~-------~~~~~~~v~~--------d~~~-------------------   79 (298)
T 3ed3_A           34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLD-------GVVQVAAVNC--------DLNK-------------------   79 (298)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTSEEEEEET--------TSTT-------------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHcc-------CCcEEEEEEc--------cCcc-------------------
Confidence            478999999999999999999  999998885       2488898885        2100                   


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCC
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQG  451 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqG  451 (570)
                            ...+.+.|+|+++|+++++++.+
T Consensus        80 ------~~~l~~~~~I~~~Pt~~~~~~g~  102 (298)
T 3ed3_A           80 ------NKALCAKYDVNGFPTLMVFRPPK  102 (298)
T ss_dssp             ------THHHHHHTTCCBSSEEEEEECCC
T ss_pred             ------CHHHHHhCCCCccceEEEEECCc
Confidence                  12467789999999999998644

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=98.70  E-value=1e-08  Score=98.08  Aligned_cols=69  Identities=9%  Similarity=-0.001  Sum_probs=55.3

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      .+||+|+|+|||+||+||+.+.  +.++.++++       .++.++.|.+        +..                   
T Consensus       112 ~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~-------~~v~~~~vd~--------~~~-------------------  157 (210)
T 3apq_A          112 NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVD-------GLLRIGAVNC--------GDD-------------------  157 (210)
T ss_dssp             HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTB-------TTBEEEEEET--------TTC-------------------
T ss_pred             ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhc-------CceEEEEEEC--------Ccc-------------------
Confidence            5789999999999999999999  999988874       2477777764        111                   


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                              ..+.+.|+++++|+++++ ++|+++.
T Consensus       158 --------~~l~~~~~v~~~Pt~~~~-~~G~~~~  182 (210)
T 3apq_A          158 --------RMLCRMKGVNSYPSLFIF-RSGMAAV  182 (210)
T ss_dssp             --------HHHHHHTTCCSSSEEEEE-CTTSCCE
T ss_pred             --------HHHHHHcCCCcCCeEEEE-ECCCcee
Confidence                    125667999999999999 9998754

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.68  E-value=2.4e-08  Score=87.65  Aligned_cols=77  Identities=8%  Similarity=0.116  Sum_probs=56.1

Q ss_pred             CCCEEEEEEecC-------CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCc
Q 008311          345 RRKNVLLLISDL-------DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPW  415 (570)
Q Consensus       345 kGKvVlL~FwAs-------WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW  415 (570)
                      +||+|+|+|||+       |||||+.+.  |.+++++++       +++.++.|.+       .+.  ..         |
T Consensus        23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~-------~~~~~~~vd~-------~~~--~~---------~   77 (123)
T 1wou_A           23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS-------EGCVFIYCQV-------GEK--PY---------W   77 (123)
T ss_dssp             TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC-------TTEEEEEEEC-------CCH--HH---------H
T ss_pred             CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcC-------CCcEEEEEEC-------CCc--hh---------h
Confidence            589999999999       999999998  888877663       3688888875       121  11         1


Q ss_pred             eeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          416 YTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       416 ~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .        |.  ...+.+.|+++++|+++++++.++++..
T Consensus        78 ~--------d~--~~~~~~~~~i~~~Pt~~~~~~~~~~~g~  108 (123)
T 1wou_A           78 K--------DP--NNDFRKNLKVTAVPTLLKYGTPQKLVES  108 (123)
T ss_dssp             H--------CT--TCHHHHHHCCCSSSEEEETTSSCEEEGG
T ss_pred             h--------ch--hHHHHHHCCCCeeCEEEEEcCCceEecc
Confidence            1        11  1236667999999999999985555543

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.66  E-value=2.3e-08  Score=96.71  Aligned_cols=68  Identities=18%  Similarity=0.256  Sum_probs=54.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||+||+.+.  |.+++++++       .++.++.|++        |..                  + 
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-------~~v~~~~vd~--------d~~------------------~-   74 (222)
T 3dxb_A           29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-------GKLTVAKLNI--------DQN------------------P-   74 (222)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC------------------T-
T ss_pred             cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc-------CCcEEEEEEC--------CCC------------------H-
Confidence            589999999999999999999  999999885       2488888875        110                  0 


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                              .+.+.|+|.++|++++++ +|+++.
T Consensus        75 --------~l~~~~~v~~~Pt~~~~~-~G~~~~   98 (222)
T 3dxb_A           75 --------GTAPKYGIRGIPTLLLFK-NGEVAA   98 (222)
T ss_dssp             --------TTGGGGTCCSBSEEEEEE-TTEEEE
T ss_pred             --------HHHHHcCCCcCCEEEEEE-CCeEEE
Confidence                    135679999999999985 898875

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.64  E-value=1.7e-08  Score=88.08  Aligned_cols=70  Identities=11%  Similarity=0.107  Sum_probs=54.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||++|+.+.  |.++.++++.      .++.++.|++        |..                    
T Consensus        32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~------~~v~~~~vd~--------d~~--------------------   77 (121)
T 2j23_A           32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG------DKVGFYKVDV--------DEQ--------------------   77 (121)
T ss_dssp             SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHH------HHSEEEEEET--------TTC--------------------
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcC------CcEEEEEEEC--------cCC--------------------
Confidence            689999999999999999998  8888777652      2488888874        210                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|++.++|+++++ ++|+++.+
T Consensus        78 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~~  103 (121)
T 2j23_A           78 -------SQIAQEVGIRAMPTFVFF-KNGQKIDT  103 (121)
T ss_dssp             -------HHHHHHHTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------HHHHHHcCCCcccEEEEE-ECCeEEee
Confidence                   125667899999999888 59998764

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=98.64  E-value=4.2e-08  Score=84.38  Aligned_cols=70  Identities=10%  Similarity=0.025  Sum_probs=51.9

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      -+||+|+|+|||+||++|+.+.  |.+++++++..  ....++.++.|.+        ++.           +       
T Consensus        23 ~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~--~~~~~v~~~~vd~--------~~~-----------~-------   74 (121)
T 2djj_A           23 DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKS--EFKDRVVIAKVDA--------TAN-----------D-------   74 (121)
T ss_dssp             CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTS--SCTTSSEEEEEET--------TTS-----------C-------
T ss_pred             cCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhc--ccCCceEEEEEEC--------ccc-----------c-------
Confidence            3789999999999999999999  99999988520  0012577777764        110           0       


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                                +.+  +++++|+++++++.|++
T Consensus        75 ----------~~~--~v~~~Pt~~~~~~~~~~   94 (121)
T 2djj_A           75 ----------VPD--EIQGFPTIKLYPAGAKG   94 (121)
T ss_dssp             ----------CSS--CCSSSSEEEEECSSCTT
T ss_pred             ----------ccc--ccCcCCeEEEEeCcCCC
Confidence                      011  88999999999998873

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=98.63  E-value=9.7e-08  Score=84.97  Aligned_cols=68  Identities=18%  Similarity=0.188  Sum_probs=53.1

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +++.|+|+||++||++|+.+.  |.++.++++       .++.++.|++        +..                    
T Consensus        49 ~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~-------~~v~~~~vd~--------~~~--------------------   93 (140)
T 1v98_A           49 GAPLTLVDFFAPWCGPCRLVSPILEELARDHA-------GRLKVVKVNV--------DEH--------------------   93 (140)
T ss_dssp             CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTEEEEEEET--------TTC--------------------
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHHHHHHcc-------CceEEEEEEC--------CCC--------------------
Confidence            444499999999999999998  888888774       2588888874        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|++.++|+++++ ++|+++.
T Consensus        94 -------~~l~~~~~v~~~Pt~~~~-~~G~~~~  118 (140)
T 1v98_A           94 -------PGLAARYGVRSVPTLVLF-RRGAPVA  118 (140)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHHCCCCccCEEEEE-eCCcEEE
Confidence                   125677999999999999 7999875

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=98.63  E-value=4.2e-08  Score=92.30  Aligned_cols=67  Identities=7%  Similarity=0.110  Sum_probs=51.1

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+|+|++.|||+||+||+..-  |.++-+++.       +...|+-|.+        |+.                  | 
T Consensus        40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~-------~~v~f~kVDV--------De~------------------~-   85 (160)
T 2av4_A           40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIK-------NFCVIYLVDI--------TEV------------------P-   85 (160)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT-------TTEEEEEEET--------TTC------------------C-
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcc-------CCcEEEEEEC--------CCC------------------H-
Confidence            358999999999999999987  888888874       2466777765        210                  1 


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                        |      ++++|+|+++||++++- +|+.+
T Consensus        86 --e------~a~~y~V~siPT~~fFk-~G~~v  108 (160)
T 2av4_A           86 --D------FNTMYELYDPVSVMFFY-RNKHM  108 (160)
T ss_dssp             --T------TTTTTTCCSSEEEEEEE-TTEEE
T ss_pred             --H------HHHHcCCCCCCEEEEEE-CCEEE
Confidence              1      46679999999998884 66666

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=98.60  E-value=7e-08  Score=88.70  Aligned_cols=69  Identities=13%  Similarity=0.124  Sum_probs=55.7

Q ss_pred             CCC-EEEEEEecCCC--HHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311          345 RRK-NVLLLISDLDI--SQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY  419 (570)
Q Consensus       345 kGK-vVlL~FwAsWC--pPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~  419 (570)
                      +++ +|+|+|||+||  +||+...  |.++-+++.       .++.|+-|++        |+.                 
T Consensus        31 ~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~-------~~v~~~KVdv--------De~-----------------   78 (137)
T 2qsi_A           31 HSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFP-------GRLVAAEVAA--------EAE-----------------   78 (137)
T ss_dssp             TSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTST-------TTEEEEEECG--------GGH-----------------
T ss_pred             cCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHcc-------CCcEEEEEEC--------CCC-----------------
Confidence            444 99999999999  9999988  888888774       3688888874        211                 


Q ss_pred             cccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          420 HPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       420 fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                                ..+..+|+|++|||++++ ++|+++.+
T Consensus        79 ----------~~la~~ygV~siPTlilF-kdG~~v~~  104 (137)
T 2qsi_A           79 ----------RGLMARFGVAVCPSLAVV-QPERTLGV  104 (137)
T ss_dssp             ----------HHHHHHHTCCSSSEEEEE-ECCEEEEE
T ss_pred             ----------HHHHHHcCCccCCEEEEE-ECCEEEEE
Confidence                      236778999999999999 69999876

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.57  E-value=1.7e-07  Score=89.56  Aligned_cols=72  Identities=10%  Similarity=0.012  Sum_probs=53.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .|++++++|||+||+||+.+.  +.++++++++   ++++++.++.|.+        ++                  +  
T Consensus       133 ~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~---~~~~~v~~~~vd~--------~~------------------~--  181 (226)
T 1a8l_A          133 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTK---AGKGKILGDMVEA--------IE------------------Y--  181 (226)
T ss_dssp             CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHH---TTCCCEEEEEEEG--------GG------------------C--
T ss_pred             CCCcEEEEEeCCCCCccHHHHHHHHHHHHhccc---ccCCcEEEEEEEc--------cc------------------C--
Confidence            456779999999999999998  9999988852   1224677777764        21                  0  


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|+|+++|+++++ ++|+.+.
T Consensus       182 -------~~l~~~~~v~~~Pt~~~~-~~G~~~~  206 (226)
T 1a8l_A          182 -------PEWADQYNVMAVPKIVIQ-VNGEDRV  206 (226)
T ss_dssp             -------HHHHHHTTCCSSCEEEEE-ETTEEEE
T ss_pred             -------HHHHHhCCCcccCeEEEE-eCCceeE
Confidence                   125677999999997777 5888764

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=98.54  E-value=2.1e-08  Score=85.13  Aligned_cols=70  Identities=7%  Similarity=0.068  Sum_probs=52.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||++|+.+.  +.++++++++    .+.++.++.|..        ++                  .+ 
T Consensus        23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~v~~~~vd~--------~~------------------~~-   71 (120)
T 1mek_A           23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKA----EGSEIRLAKVDA--------TE------------------ES-   71 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTT----TCCCCBCEEEET--------TT------------------CC-
T ss_pred             cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhc----cCCcEEEEEEcC--------CC------------------CH-
Confidence            689999999999999999988  8888888853    123455555543        11                  01 


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                              .+.++|+++++|+++++ ++|+++
T Consensus        72 --------~~~~~~~v~~~Pt~~~~-~~g~~~   94 (120)
T 1mek_A           72 --------DLAQQYGVRGYPTIKFF-RNGDTA   94 (120)
T ss_dssp             --------SSHHHHTCCSSSEEEEE-ESSCSS
T ss_pred             --------HHHHHCCCCcccEEEEE-eCCCcC
Confidence                    14556899999999999 688765

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.51  E-value=1.9e-07  Score=89.50  Aligned_cols=71  Identities=10%  Similarity=0.068  Sum_probs=55.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+|+|+|+|||+||+||+.+.  +.++.++++.    ...++.++.|.+        ++.                    
T Consensus       146 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~----~~~~v~~~~vd~--------~~~--------------------  193 (241)
T 3idv_A          146 DADIILVEFYAPWCGHCKKLAPEYEKAAKELSK----RSPPIPLAKVDA--------TAE--------------------  193 (241)
T ss_dssp             HCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHT----SSSCCCEEEEET--------TTC--------------------
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhc----cCCcEEEEEEEC--------CCC--------------------
Confidence            579999999999999999988  9999998863    134577777764        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|+|+++|++++++ +|+.+.
T Consensus       194 -------~~l~~~~~v~~~Pt~~~~~-~g~~~~  218 (241)
T 3idv_A          194 -------TDLAKRFDVSGYPTLKIFR-KGRPYD  218 (241)
T ss_dssp             -------HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             -------HHHHHHcCCcccCEEEEEE-CCeEEE
Confidence                   1267789999999999997 577654

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.51  E-value=8.1e-07  Score=100.75  Aligned_cols=164  Identities=6%  Similarity=-0.105  Sum_probs=105.9

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      ++++++.|+|+||++|....  +.++.+++++       ++.++.|..        +.                  +   
T Consensus       563 ~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~-------~v~~~~vd~--------~~------------------~---  606 (780)
T 3apo_A          563 DEVWMVDFYSPWSHPSQVLMPEWKRMARTLTG-------LINVGSVDC--------GQ------------------Y---  606 (780)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-------TSEEEEEET--------TT------------------T---
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC-------CeEEEEEEC--------cc------------------h---
Confidence            57889999999999999987  8888888852       465665542        10                  0   


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCc----EEccccchhHhhhcCCCCCCCchhHHHHhhhcCccccccccCCCcc-
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGR----VVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPL-  498 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGk----Vv~~na~~~I~~~G~~aFPFt~~~~e~L~~e~~w~~~ll~d~~d~~-  498 (570)
                            ..+.+.|++++.|+++++.+.++    .+..+|           .+.+.....+...+..  ...+.+ ++.. 
T Consensus       607 ------~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g-----------~~~~~~~l~~fi~~~~--~~~v~~-l~~~~  666 (780)
T 3apo_A          607 ------HSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNG-----------WNRDAYSLRSWGLGFL--PQASID-LTPQT  666 (780)
T ss_dssp             ------HHHHHHTTCCSSSEEEEECCCSSSCCSCEECCC-----------SCCSHHHHHHHHHTTS--CCCSEE-ECHHH
T ss_pred             ------HHHHHHcCCCCCCeEEEEcCCCcCccchhhcCC-----------CCCCHHHHHHHHhhhc--cccccc-CCHHH
Confidence                  12556799999999999986543    221111           1222222222222211  000110 1111 


Q ss_pred             ccc-cccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          499 VLD-WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       499 i~~-~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..+ ....||.+.++|.+. |++|+.+.|.+.+++++.+.++.++.|..+...+ +.+.+++.++|++++
T Consensus       667 ~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~  735 (780)
T 3apo_A          667 FNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQ-TCQKAGIKAYPSVKL  735 (780)
T ss_dssp             HHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH-HHHHTTCCSSSEEEE
T ss_pred             HHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHH-HHHhcCCCcCCEEEE
Confidence            111 124678899999888 9999999999999998755578888888876554 555678889999865

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.48  E-value=3e-08  Score=87.40  Aligned_cols=69  Identities=17%  Similarity=0.247  Sum_probs=50.3

Q ss_pred             CCCEEEEEEecCCCH--------------HhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH
Q 008311          345 RRKNVLLLISDLDIS--------------QEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET  408 (570)
Q Consensus       345 kGKvVlL~FwAsWCp--------------PCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~  408 (570)
                      +||+|+++|||+||+              ||+...  +.++.++++       +++.++.|++        |+.      
T Consensus        20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~-------~~~~~~~vd~--------d~~------   78 (123)
T 1oaz_A           20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ-------GKLTVAKLNI--------DQN------   78 (123)
T ss_dssp             CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------------CEEEEEET--------TSC------
T ss_pred             CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhc-------CCeEEEEEEC--------CCC------
Confidence            589999999999999              999988  888777764       2477787775        111      


Q ss_pred             HHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                                  +         .+.+.|+++++|+++++ ++|+++.+
T Consensus        79 ------------~---------~l~~~~~v~~~Pt~~~~-~~G~~~~~  104 (123)
T 1oaz_A           79 ------------P---------GTAPKYGIRGIPTLLLF-KNGEVAAT  104 (123)
T ss_dssp             ------------T---------TTGGGGTCCBSSEEEEE-ESSSEEEE
T ss_pred             ------------H---------HHHHHcCCCccCEEEEE-ECCEEEEE
Confidence                        0         14567999999999999 99998753

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.48  E-value=6.7e-08  Score=77.72  Aligned_cols=61  Identities=15%  Similarity=0.137  Sum_probs=47.8

Q ss_pred             EEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccccC
Q 008311          348 NVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLID  425 (570)
Q Consensus       348 vVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D  425 (570)
                      +++++|||+|||+|+.+.  |.++.++++       ++++++.|++        |++                       
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~--------~~~-----------------------   44 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFG-------DKIDVEKIDI--------MVD-----------------------   44 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHC-------SSCCEEEECT--------TTC-----------------------
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhc-------CCeEEEEEEC--------CCC-----------------------
Confidence            468899999999999998  888888874       3688888875        111                       


Q ss_pred             hHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          426 RAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       426 ~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                      .    .+.+.|+++++|++++   +|++
T Consensus        45 ~----~~~~~~~v~~~Pt~~~---~G~~   65 (85)
T 1nho_A           45 R----EKAIEYGLMAVPAIAI---NGVV   65 (85)
T ss_dssp             G----GGGGGTCSSCSSEEEE---TTTE
T ss_pred             H----HHHHhCCceeeCEEEE---CCEE
Confidence            0    1456799999999998   8886

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.48  E-value=7.3e-08  Score=77.53  Aligned_cols=62  Identities=21%  Similarity=0.248  Sum_probs=48.7

Q ss_pred             CEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccccc
Q 008311          347 KNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLI  424 (570)
Q Consensus       347 KvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~  424 (570)
                      ++++++||++|||+|+.+.  |.++.++++       ++++++.|++        |++                  +   
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~--------~~~------------------~---   46 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMP-------DAVEVEYINV--------MEN------------------P---   46 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCS-------SSEEEEEEES--------SSS------------------C---
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcC-------CceEEEEEEC--------CCC------------------H---
Confidence            5789999999999999998  888888773       3688888875        110                  0   


Q ss_pred             ChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          425 DRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       425 D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                            .+.+.|+++++|++++   +|++
T Consensus        47 ------~~~~~~~v~~~Pt~~~---~G~~   66 (85)
T 1fo5_A           47 ------QKAMEYGIMAVPTIVI---NGDV   66 (85)
T ss_dssp             ------CTTTSTTTCCSSEEEE---TTEE
T ss_pred             ------HHHHHCCCcccCEEEE---CCEE
Confidence                  1345689999999998   8887

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=98.47  E-value=1.1e-07  Score=94.95  Aligned_cols=91  Identities=16%  Similarity=0.109  Sum_probs=62.5

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||+||+...  |.++++++.        ++.++.|.+        +.      .              
T Consensus       132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~--------~v~f~kVd~--------d~------~--------------  175 (245)
T 1a0r_P          132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP--------MVKFCKIKA--------SN------T--------------  175 (245)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT--------TSEEEEEEH--------HH------H--------------
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--------CCEEEEEeC--------Cc------H--------------
Confidence            489999999999999999998  888888763        366666653        11      0              


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhhc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEE  484 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e~  484 (570)
                        +      +.+.|++.++||++++. +|+++.+- .... ..|..  -|+....+.++.+.
T Consensus       176 --~------l~~~~~I~~~PTll~~~-~G~~v~~~-vG~~-~~~g~--~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          176 --G------AGDRFSSDVLPTLLVYK-GGELLSNF-ISVT-EQLAE--EFFTGDVESFLNEY  224 (245)
T ss_dssp             --C------CTTSSCTTTCSEEEEEE-TTEEEEEE-TTGG-GGSCT--TCCHHHHHHHHHTT
T ss_pred             --H------HHHHCCCCCCCEEEEEE-CCEEEEEE-eCCc-ccccc--cccHHHHHHHHHHc
Confidence              0      23468999999998885 99987541 1111 12211  26667777777653

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.45  E-value=2.8e-06  Score=83.77  Aligned_cols=65  Identities=12%  Similarity=0.023  Sum_probs=49.0

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhC---C-CCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTA---R-IPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~---~-~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      ..|+...+.|.+. |++|++..|.+.+++.+.   + .++.+..|.-+...+ +.+.+++.+.|+++++|+
T Consensus       136 ~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~-~~~~~~V~~vPt~~i~G~  205 (243)
T 2hls_A          136 LKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPD-IADKYGVMSVPSIAINGY  205 (243)
T ss_dssp             CCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHH-HHHHTTCCSSSEEEETTE
T ss_pred             cCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHH-HHHHcCCeeeCeEEECCE
Confidence            3577777767666 999999999999988653   2 567777777665544 444578899999999875

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.42  E-value=4.5e-07  Score=71.89  Aligned_cols=60  Identities=13%  Similarity=-0.030  Sum_probs=44.9

Q ss_pred             EEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccccCh
Q 008311          349 VLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDR  426 (570)
Q Consensus       349 VlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D~  426 (570)
                      +.++|||+||++|+...  |.++.++++       .+++++.|          |                   .      
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~-------~~~~~~~v----------~-------------------~------   39 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELG-------IDAEFEKI----------K-------------------E------   39 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTT-------CCEEEEEE----------C-------------------S------
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcC-------CceEEEEe----------c-------------------C------
Confidence            45899999999999988  888887763       24555544          1                   0      


Q ss_pred             HHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          427 AVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       427 ~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                         ..+.+.|+++++|++++   +|+++..
T Consensus        40 ---~~~~~~~~v~~~Pt~~~---~G~~~~~   63 (77)
T 1ilo_A           40 ---MDQILEAGLTALPGLAV---DGELKIM   63 (77)
T ss_dssp             ---HHHHHHHTCSSSSCEEE---TTEEEEC
T ss_pred             ---HHHHHHCCCCcCCEEEE---CCEEEEc
Confidence               12456789999999998   8998765

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=98.42  E-value=1.3e-07  Score=87.14  Aligned_cols=69  Identities=12%  Similarity=0.136  Sum_probs=53.8

Q ss_pred             CCCEEEEEEecCC--CHHhHHHH--HHHHHHHHhhhhhccCCC-eEEEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311          345 RRKNVLLLISDLD--ISQEELSI--LEQIYNESRLHLTRQESH-YEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY  419 (570)
Q Consensus       345 kGKvVlL~FwAsW--CpPCr~e~--L~~iY~elk~~~~k~~~~-fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~  419 (570)
                      .+++|+|+|||.|  |+||+...  |.++-+++.       ++ +.|+-|++        |+                  
T Consensus        33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~-------g~~v~~~KVdv--------De------------------   79 (140)
T 2qgv_A           33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFP-------DYTWQVAIADL--------EQ------------------   79 (140)
T ss_dssp             TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCT-------TSCCEEEECCH--------HH------------------
T ss_pred             CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcC-------CCeEEEEEEEC--------CC------------------
Confidence            5567899999999  99998877  888877763       24 77887764        21                  


Q ss_pred             cccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          420 HPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       420 fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                               ...++.+|+|++|||++++ ++|+++.+
T Consensus        80 ---------~~~lA~~ygV~sIPTlilF-k~G~~v~~  106 (140)
T 2qgv_A           80 ---------SEAIGDRFGAFRFPATLVF-TGGNYRGV  106 (140)
T ss_dssp             ---------HHHHHHHHTCCSSSEEEEE-ETTEEEEE
T ss_pred             ---------CHHHHHHcCCccCCEEEEE-ECCEEEEE
Confidence                     1237788999999999999 79999865

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.40  E-value=3.6e-07  Score=97.58  Aligned_cols=67  Identities=7%  Similarity=0.069  Sum_probs=52.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||+||+.+.  +.++++++++     ..++.++.|..        +..         .          
T Consensus       369 ~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~-----~~~v~~~~id~--------~~~---------~----------  416 (481)
T 3f8u_A          369 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSK-----DPNIVIAKMDA--------TAN---------D----------  416 (481)
T ss_dssp             TTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTT-----CSSEEEEEEET--------TSS---------C----------
T ss_pred             CCCcEEEEEecCcChhHHHhhHHHHHHHHHhcc-----CCCEEEEEEEC--------Cch---------h----------
Confidence            389999999999999999999  9999999863     23566666653        110         0          


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGR  452 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGk  452 (570)
                               +.+.|++.++|+++++++.|+
T Consensus       417 ---------~~~~~~v~~~Pt~~~~~~~~~  437 (481)
T 3f8u_A          417 ---------VPSPYEVRGFPTIYFSPANKK  437 (481)
T ss_dssp             ---------CCTTCCCCSSSEEEEECTTCT
T ss_pred             ---------hHhhCCCcccCEEEEEeCCCe
Confidence                     123589999999999998887

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=98.39  E-value=7.1e-07  Score=79.24  Aligned_cols=87  Identities=14%  Similarity=0.054  Sum_probs=60.5

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      +++|+++|||+||+||+...  |.++-+++.        ++.++-|.+        |+.                     
T Consensus        23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~--------~v~f~kvd~--------d~~---------------------   65 (118)
T 3evi_A           23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFP--------ETKFVKAIV--------NSC---------------------   65 (118)
T ss_dssp             TCEEEEEEECTTSHHHHHHHHHHHHHHHHCT--------TSEEEEEEG--------GGT---------------------
T ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--------CCEEEEEEh--------HHh---------------------
Confidence            45999999999999999987  777766652        466666653        210                     


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhh
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKE  483 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e  483 (570)
                               .+.|+++++||++++ ++|+.+.+-. . ....|..  -|+....|..+.+
T Consensus        66 ---------~~~~~v~~~PT~~~f-k~G~~v~~~~-G-~~~~gg~--~~~~~~le~~L~~  111 (118)
T 3evi_A           66 ---------IQHYHDNCLPTIFVY-KNGQIEAKFI-G-IIECGGI--NLKLEELEWKLAE  111 (118)
T ss_dssp             ---------STTCCGGGCSEEEEE-ETTEEEEEEE-S-TTTTTCS--SCCHHHHHHHHHT
T ss_pred             ---------HHHCCCCCCCEEEEE-ECCEEEEEEe-C-hhhhCCC--CCCHHHHHHHHHH
Confidence                     134889999999988 5898886521 1 1123433  5888888877765

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=97.75  E-value=3.9e-08  Score=81.50  Aligned_cols=68  Identities=19%  Similarity=0.259  Sum_probs=51.5

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+++||++|||+|+.+.  +.++.++++       .++.++.|++        |..                    
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~v~~--------~~~--------------------   62 (106)
T 2yj7_A           18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYE-------GKVKVVKVNV--------DEN--------------------   62 (106)
Confidence            579999999999999999988  888887774       2455665553        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                             ..+.+.|++.++|+++++ ++|+++.
T Consensus        63 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~   87 (106)
T 2yj7_A           63 -------PNTAAQYGIRSIPTLLLF-KNGQVVD   87 (106)
Confidence                   124566899999999999 8998864

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.37  E-value=1.1e-08  Score=88.88  Aligned_cols=34  Identities=6%  Similarity=-0.097  Sum_probs=27.7

Q ss_pred             CeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHH
Q 008311          337 RRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIY  370 (570)
Q Consensus       337 ~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY  370 (570)
                      +.++++..+||.++++|||+|||||+.+.  |.++.
T Consensus         3 ~~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a   38 (106)
T 3kp8_A            3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAF   38 (106)
T ss_dssp             HHHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGG
T ss_pred             HhhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHH
Confidence            34667778899999999999999999986  55444

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=98.35  E-value=4.8e-08  Score=87.35  Aligned_cols=74  Identities=12%  Similarity=0.078  Sum_probs=49.1

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      -+.+.++|+|||.||++|+.+-  +...|+....     ...+.|+.|.+.+        +          .|      +
T Consensus        16 ~~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~-----~~~~~l~~vdv~~--------~----------~~------~   66 (116)
T 3dml_A           16 DKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE-----GRAAPVQRLQMRD--------P----------LP------P   66 (116)
T ss_dssp             ---CEEEEEEECTTCHHHHHHHHHTTTTGGGSHH-----HHHSCEEEEETTS--------C----------CC------T
T ss_pred             ccCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhh-----cccceEEEEECCC--------C----------Cc------h
Confidence            3557899999999999999876  3334432210     1247788888611        1          00      0


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                         +      ++..|+|.++||+++++ +|+.+.+
T Consensus        67 ---~------la~~~~V~g~PT~i~f~-~G~ev~R   91 (116)
T 3dml_A           67 ---G------LELARPVTFTPTFVLMA-GDVESGR   91 (116)
T ss_dssp             ---T------CBCSSCCCSSSEEEEEE-TTEEEEE
T ss_pred             ---h------HHHHCCCCCCCEEEEEE-CCEEEee
Confidence               1      33458899999999999 9999874

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=98.34  E-value=1.5e-06  Score=77.21  Aligned_cols=70  Identities=14%  Similarity=0.227  Sum_probs=54.4

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      +|+|+++|+|+|||||+.-.  +.++.++ .        ++.++.|.+        |+.+                    
T Consensus        24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~-~--------~v~~~~vdV--------de~r--------------------   66 (112)
T 3iv4_A           24 NKYVFVLKHSETCPISANAYDQFNKFLYE-R--------DMDGYYLIV--------QQER--------------------   66 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHH-H--------TCCEEEEEG--------GGGH--------------------
T ss_pred             CCCEEEEEECCcCHhHHHHHHHHHHHhcc-C--------CceEEEEEe--------ecCc--------------------
Confidence            78999999999999999887  7777763 1        477888875        2111                    


Q ss_pred             cChHHHHHHHHhCCCCC-CceEEEECCCCcEEcc
Q 008311          424 IDRAVIRYVKDVWHFKN-KPILVVLDPQGRVVSP  456 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~-IPtlVVLDpqGkVv~~  456 (570)
                         +.-..+++.|+|++ .|+++++ ++|+++..
T Consensus        67 ---~~Sn~IA~~~~V~h~sPq~il~-k~G~~v~~   96 (112)
T 3iv4_A           67 ---DLSDYIAKKTNVKHESPQAFYF-VNGEMVWN   96 (112)
T ss_dssp             ---HHHHHHHHHHTCCCCSSEEEEE-ETTEEEEE
T ss_pred             ---hhhHHHHHHhCCccCCCeEEEE-ECCEEEEE
Confidence               12245889999995 9999999 89999875

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.34  E-value=2.9e-08  Score=86.28  Aligned_cols=68  Identities=9%  Similarity=0.113  Sum_probs=51.4

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+||++||++|+.+.  |.+++++++        ++.++.|++        |..                    
T Consensus        35 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--------~v~~~~v~~--------~~~--------------------   78 (130)
T 1wmj_A           35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--------GAVFLKVDV--------DEL--------------------   78 (130)
T ss_dssp             TTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--------TBCCEECCT--------TTS--------------------
T ss_pred             cCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--------CCEEEEEec--------cch--------------------
Confidence            589999999999999999988  888877763        466666653        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|++.++|+++++ ++|+++.+
T Consensus        79 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~~  104 (130)
T 1wmj_A           79 -------KEVAEKYNVEAMPTFLFI-KDGAEADK  104 (130)
T ss_dssp             -------GGGHHHHTCCSSCCCCBC-TTTTCCBC
T ss_pred             -------HHHHHHcCCCccceEEEE-eCCeEEEE
Confidence                   124567899999998777 89988653

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.30  E-value=1.3e-06  Score=86.08  Aligned_cols=71  Identities=10%  Similarity=0.058  Sum_probs=52.9

Q ss_pred             ccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311          343 VLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH  420 (570)
Q Consensus       343 ~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f  420 (570)
                      +++|++++++|||+|||+|+...  |.+++.+++.   +...++.+..|.+        +.                  +
T Consensus       135 ~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~---~~~~~v~~~~vd~--------~~------------------~  185 (243)
T 2hls_A          135 SLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWK---QGNPVILSEAVEA--------YE------------------N  185 (243)
T ss_dssp             HCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHH---TTCCCEEEEEEET--------TT------------------C
T ss_pred             HcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHccc---ccCCcEEEEEEEC--------cc------------------C
Confidence            46799999999999999999998  8888888741   1114677777654        11                  1


Q ss_pred             ccccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                               ..+.+.|+|+++|++++   +|+++
T Consensus       186 ---------~~~~~~~~V~~vPt~~i---~G~~~  207 (243)
T 2hls_A          186 ---------PDIADKYGVMSVPSIAI---NGYLV  207 (243)
T ss_dssp             ---------HHHHHHTTCCSSSEEEE---TTEEE
T ss_pred             ---------HHHHHHcCCeeeCeEEE---CCEEE
Confidence                     12556799999999988   78865

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.29  E-value=3.4e-07  Score=89.38  Aligned_cols=90  Identities=17%  Similarity=0.165  Sum_probs=60.4

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +||+|+|+|||+||++|+...  |.++.+++.        ++.++.|.+        +      ..              
T Consensus       119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~--------~v~f~~vd~--------~------~~--------------  162 (217)
T 2trc_P          119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--------MVKFCKIRA--------S------NT--------------  162 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--------TSEEEEEEH--------H------HH--------------
T ss_pred             CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC--------CeEEEEEEC--------C------cH--------------
Confidence            469999999999999999988  777766552        466666653        1      00              


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhh
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKE  483 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e  483 (570)
                              .+.+.|++.++|+++++. +|+++.+- .......| .  -|+....+.++.+
T Consensus       163 --------~l~~~~~i~~~PTl~~~~-~G~~v~~~-~G~~~~~g-~--~~~~~~Le~~L~~  210 (217)
T 2trc_P          163 --------GAGDRFSSDVLPTLLVYK-GGELISNF-ISVAEQFA-E--DFFAADVESFLNE  210 (217)
T ss_dssp             --------TCSTTSCGGGCSEEEEEE-TTEEEEEE-TTGGGGSC-S--SCCHHHHHHHHHT
T ss_pred             --------HHHHHCCCCCCCEEEEEE-CCEEEEEE-eCCcccCc-c--cCCHHHHHHHHHH
Confidence                    023458999999999995 99987531 12122222 2  3666667776654

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.25  E-value=6.9e-06  Score=85.72  Aligned_cols=74  Identities=9%  Similarity=0.114  Sum_probs=53.6

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++|+|+|+|||+||++|+...  +.++.+++++... .+.++.++.|..        +.                     
T Consensus        21 ~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~-~~~~v~~~~Vd~--------~~---------------------   70 (382)
T 2r2j_A           21 NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFP-NENQVVFARVDC--------DQ---------------------   70 (382)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC----CCEEEEEEET--------TT---------------------
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcC-CCCceEEEEEEC--------Cc---------------------
Confidence            579999999999999999998  9999998853100 012466666553        10                     


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                        +    ..+.++|+|+++|+++++ ++|+++.
T Consensus        71 --~----~~l~~~~~v~~~Pt~~~f-~~G~~~~   96 (382)
T 2r2j_A           71 --H----SDIAQRYRISKYPTLKLF-RNGMMMK   96 (382)
T ss_dssp             --C----HHHHHHTTCCEESEEEEE-ETTEEEE
T ss_pred             --c----HHHHHhcCCCcCCEEEEE-eCCcEee
Confidence              1    236778999999999877 5788764

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=98.25  E-value=1.4e-06  Score=83.27  Aligned_cols=101  Identities=12%  Similarity=0.123  Sum_probs=73.8

Q ss_pred             Ceeeccc-cCCCEEEEE-EecCCCHHhH-HHH--HHHHHHHH-hhhhhccCCCeE-EEEEecccCCCCCChhhHHHHHHH
Q 008311          337 RRVNIEV-LRRKNVLLL-ISDLDISQEE-LSI--LEQIYNES-RLHLTRQESHYE-VVWIPIVDHFIHWDDPTQKKFETL  409 (570)
Q Consensus       337 ~~Vsls~-LkGKvVlL~-FwAsWCpPCr-~e~--L~~iY~el-k~~~~k~~~~fE-IV~IsIvD~s~~w~D~~~~~F~~~  409 (570)
                      +.+++++ ++||.|+|+ |.+.|||.|- .++  +.+.|.++ ++      .+.+ |+.||. |     +....+.|.+.
T Consensus        33 ~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~------~g~~~V~gvS~-D-----~~~~~~~~~~~  100 (182)
T 1xiy_A           33 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKE------NNFDDIYCITN-N-----DIYVLKSWFKS  100 (182)
T ss_dssp             EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT------SCCSEEEEEES-S-----CHHHHHHHHHH
T ss_pred             eeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHh------CCCcEEEEEeC-C-----CHHHHHHHHHH
Confidence            7999998 699876665 5677999999 888  99999999 73      3684 999996 3     34455677653


Q ss_pred             HcCCCceeeccccccChHHHHHHHHhCCCC------C-----CceEEEECCCCcEEccc
Q 008311          410 QSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------N-----KPILVVLDPQGRVVSPN  457 (570)
Q Consensus       410 ~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~-----IPtlVVLDpqGkVv~~n  457 (570)
                      . ...    +||.+.|.  ...+.+.||+.      |     ...++||| +|+|+...
T Consensus       101 ~-~~~----~f~lLsD~--~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~  151 (182)
T 1xiy_A          101 M-DIK----KIKYISDG--NSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMF  151 (182)
T ss_dssp             T-TCC----SSEEEECT--TSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEE
T ss_pred             c-CCC----CceEEEeC--chHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEE
Confidence            2 221    46666675  35688889873      2     46789999 99998763

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=98.22  E-value=7.6e-07  Score=81.30  Aligned_cols=67  Identities=12%  Similarity=0.242  Sum_probs=43.7

Q ss_pred             CCEEEEEEecCC--CHHhHHHH--HHHHHHHHhhhhhccCCCeE--EEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311          346 RKNVLLLISDLD--ISQEELSI--LEQIYNESRLHLTRQESHYE--VVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY  419 (570)
Q Consensus       346 GKvVlL~FwAsW--CpPCr~e~--L~~iY~elk~~~~k~~~~fE--IV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~  419 (570)
                      ++.++++|||.|  |+||+...  |.++++++ +       ++.  ++.|++        |+                  
T Consensus        34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~-------~v~~~~~~Vd~--------d~------------------   79 (142)
T 2es7_A           34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P-------QFDWQVAVADL--------EQ------------------   79 (142)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T-------TSCCEEEEECH--------HH------------------
T ss_pred             CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c-------ccceeEEEEEC--------CC------------------
Confidence            345788899988  99999988  88888766 2       355  777753        21                  


Q ss_pred             cccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          420 HPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       420 fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                               ...+.++|+|+++||++++ ++|+++.+
T Consensus        80 ---------~~~la~~~~V~~iPT~~~f-k~G~~v~~  106 (142)
T 2es7_A           80 ---------SEAIGDRFNVRRFPATLVF-TDGKLRGA  106 (142)
T ss_dssp             ---------HHHHHHTTTCCSSSEEEEE-SCC----C
T ss_pred             ---------CHHHHHhcCCCcCCeEEEE-eCCEEEEE
Confidence                     1236778999999999999 89998754

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=98.20  E-value=1.4e-06  Score=94.73  Aligned_cols=70  Identities=6%  Similarity=-0.006  Sum_probs=53.0

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccC----CCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQE----SHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV  418 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~----~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV  418 (570)
                      ++|+|+|+|||+||+||+.+.  +.++++++++.   .+    +++.++-|.+        |+.                
T Consensus        41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~---~g~~~~~~v~f~~VD~--------d~~----------------   93 (470)
T 3qcp_A           41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVE---HGKDALQIATAAAVNC--------ASE----------------   93 (470)
T ss_dssp             GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCS---SCSSGGGGCEEEEEET--------TTC----------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhh---cccccCceEEEEEEEC--------CCC----------------
Confidence            348999999999999999999  99999888531   11    1477777764        211                


Q ss_pred             ccccccChHHHHHHHHhCCCCCCceEEEECCCCc
Q 008311          419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGR  452 (570)
Q Consensus       419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGk  452 (570)
                                 ..+.+.|+|+++|+++++++.|.
T Consensus        94 -----------~~la~~y~V~~~PTlilf~~gg~  116 (470)
T 3qcp_A           94 -----------VDLCRKYDINFVPRLFFFYPRDS  116 (470)
T ss_dssp             -----------HHHHHHTTCCSSCEEEEEEESSC
T ss_pred             -----------HHHHHHcCCCccCeEEEEECCCc
Confidence                       13667899999999999987664

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=98.16  E-value=2.6e-06  Score=80.76  Aligned_cols=102  Identities=12%  Similarity=0.148  Sum_probs=74.3

Q ss_pred             Ceeeccc-cCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeE-EEEEecccCCCCCChhhHHHHHHHHc
Q 008311          337 RRVNIEV-LRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYE-VVWIPIVDHFIHWDDPTQKKFETLQS  411 (570)
Q Consensus       337 ~~Vsls~-LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fE-IV~IsIvD~s~~w~D~~~~~F~~~~~  411 (570)
                      +++++++ ++||.|+|+|. +.|||.|..++  +.+.|.++++      .+.+ |+.||. |     +....++|.+...
T Consensus        32 ~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~------~gv~~VigIS~-D-----~~~~~~~w~~~~~   99 (171)
T 2xhf_A           32 KSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKE------EGYHTIACIAV-N-----DPFVMAAWGKTVD   99 (171)
T ss_dssp             CEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHH------TTCCEEEEEES-S-----CHHHHHHHHHHHC
T ss_pred             cEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHH------CCCCEEEEEeC-C-----CHHHHHHHHHhcC
Confidence            8999999 59998777765 46899999999  9999999974      3685 999996 3     3445677765322


Q ss_pred             CCCceeeccccccChHHHHHHHHhCCCC-----------CCceEEEECCCCcEEccc
Q 008311          412 SMPWYTVYHPTLIDRAVIRYVKDVWHFK-----------NKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       412 ~MPW~aV~fP~l~D~~~~~~L~~~y~V~-----------~IPtlVVLDpqGkVv~~n  457 (570)
                       ..   .+||.+.|.  ...+.+.||+.           ..-.++||| +|+|+...
T Consensus       100 -~~---~~f~lLSD~--~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~  149 (171)
T 2xhf_A          100 -PE---HKIRMLADM--HGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVS  149 (171)
T ss_dssp             -TT---CCSEEEECT--TSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred             -CC---CCeEEEEeC--CchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEE
Confidence             20   146666675  35678888863           235678998 99998753

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.15  E-value=9e-06  Score=86.74  Aligned_cols=67  Identities=7%  Similarity=-0.008  Sum_probs=51.5

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      +|++|+|+|||+||++|+.+.  +.++.+++++       .+.++.|..        +..                    
T Consensus        20 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~-------~v~~~~vd~--------~~~--------------------   64 (481)
T 3f8u_A           20 SAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG-------IVPLAKVDC--------TAN--------------------   64 (481)
T ss_dssp             SSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-------TCCEEEEET--------TTC--------------------
T ss_pred             CCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcC-------ceEEEEEEC--------CCC--------------------
Confidence            448999999999999999998  9999988852       355666653        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                             ..+.++|+|+++|+++++ ++|+++
T Consensus        65 -------~~l~~~~~v~~~Ptl~~~-~~g~~~   88 (481)
T 3f8u_A           65 -------TNTCNKYGVSGYPTLKIF-RDGEEA   88 (481)
T ss_dssp             -------HHHHHHTTCCEESEEEEE-ETTEEE
T ss_pred             -------HHHHHhcCCCCCCEEEEE-eCCcee
Confidence                   236778999999999988 677654

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.15  E-value=3.7e-06  Score=80.64  Aligned_cols=63  Identities=6%  Similarity=-0.022  Sum_probs=47.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+++++++|||+||++|+.+.  +.++.+++        .++.++.|.+        +.                  +  
T Consensus       135 ~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~--------~~v~~~~vd~--------~~------------------~--  178 (229)
T 2ywm_A          135 DIPIEIWVFVTTSCGYCPSAAVMAWDFALAN--------DYITSKVIDA--------SE------------------N--  178 (229)
T ss_dssp             CSCEEEEEEECTTCTTHHHHHHHHHHHHHHC--------TTEEEEEEEG--------GG------------------C--
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHC--------CCeEEEEEEC--------CC------------------C--
Confidence            456779999999999999998  77777665        2577777764        21                  1  


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                             ..+.+.|+++++|++++   +|++
T Consensus       179 -------~~l~~~~~v~~~Pt~~~---~G~~  199 (229)
T 2ywm_A          179 -------QDLAEQFQVVGVPKIVI---NKGV  199 (229)
T ss_dssp             -------HHHHHHTTCCSSSEEEE---GGGT
T ss_pred             -------HHHHHHcCCcccCEEEE---CCEE
Confidence                   12667899999999998   7774

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.12  E-value=3.9e-06  Score=86.08  Aligned_cols=64  Identities=8%  Similarity=0.059  Sum_probs=48.4

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||++|+.+.  +.++.+++++     ..++.++.|..        +..                    
T Consensus       266 ~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~-----~~~v~~~~vd~--------~~~--------------------  312 (361)
T 3uem_A          266 EKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKD-----HENIVIAKMDS--------TAN--------------------  312 (361)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-----CSSEEEEEEET--------TTC--------------------
T ss_pred             CCCcEEEEEecCcCHhHHHHHHHHHHHHHHhcc-----CCcEEEEEEEC--------Ccc--------------------
Confidence            689999999999999999998  9999998863     23465555542        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCC
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQ  450 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpq  450 (570)
                        +       .+.|+|+++|+++++++.
T Consensus       313 --~-------~~~~~v~~~Pt~~~~~~~  331 (361)
T 3uem_A          313 --E-------VEAVKVHSFPTLKFFPAS  331 (361)
T ss_dssp             --B-------CSSCCCCSSSEEEEECSS
T ss_pred             --c-------hhhcCCcccCeEEEEECC
Confidence              0       124799999999999765

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=98.06  E-value=1.3e-05  Score=76.67  Aligned_cols=72  Identities=14%  Similarity=0.075  Sum_probs=50.9

Q ss_pred             CCCEEEEEEec-------CCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCc
Q 008311          345 RRKNVLLLISD-------LDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPW  415 (570)
Q Consensus       345 kGKvVlL~FwA-------sWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW  415 (570)
                      ++.+|+++|||       .||+||+.+.  +.++-++++.+.  .++++.|+-|.+        |+              
T Consensus        36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~--~~~~v~f~kvD~--------d~--------------   91 (178)
T 3ga4_A           36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQA--PQSLNLFFTVDV--------NE--------------   91 (178)
T ss_dssp             TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHC--TTCCEEEEEEET--------TT--------------
T ss_pred             CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhcc--CCCCEEEEEEEC--------cc--------------
Confidence            45689999999       4999999998  888888875211  113454554442        21              


Q ss_pred             eeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          416 YTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       416 ~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                                   ...+.++|+|+++|+++++.+.|..
T Consensus        92 -------------~~~la~~~~I~siPtl~~F~~g~~~  116 (178)
T 3ga4_A           92 -------------VPQLVKDLKLQNVPHLVVYPPAESN  116 (178)
T ss_dssp             -------------CHHHHHHTTCCSSCEEEEECCCCGG
T ss_pred             -------------CHHHHHHcCCCCCCEEEEEcCCCCC
Confidence                         1236778999999999999876644

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.06  E-value=1.9e-05  Score=76.30  Aligned_cols=98  Identities=13%  Similarity=0.123  Sum_probs=55.6

Q ss_pred             eccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChh------------hHHH
Q 008311          340 NIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDP------------TQKK  405 (570)
Q Consensus       340 sls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~------------~~~~  405 (570)
                      .+..-+||++++.||+.|||+|+.+.  |.++.++          ++.|+++.+ .......+.            ..+.
T Consensus        80 ~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~----------~v~v~~~~~-p~~~~~~~s~~~a~a~~~a~d~~~~  148 (216)
T 1eej_A           80 VYKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL----------GITVRYLAF-PRQGLDSDAEKEMKAIWCAKDKNKA  148 (216)
T ss_dssp             EECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT----------TEEEEEEEC-CTTCSSSHHHHHHHHHHTSSSHHHH
T ss_pred             eecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhC----------CcEEEEEEC-CccCCCchHHHHHHHHHhccCHHHH
Confidence            33445789999999999999999998  7776431          466776643 110000111            1123


Q ss_pred             HHHHHcCCCceeeccccc-cChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          406 FETLQSSMPWYTVYHPTL-IDRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l-~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                      |.+.....+   ++++.. ...+....+.+.|||++.|++++.|  |+.
T Consensus       149 ~~~~~~~~~---~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~d--G~~  192 (216)
T 1eej_A          149 FDDVMAGKS---VAPASCDVDIADHYALGVQLGVSGTPAVVLSN--GTL  192 (216)
T ss_dssp             HHHHHTTCC---CCCCCCSCCHHHHHHHHHHHTCCSSSEEECTT--SCE
T ss_pred             HHHHHhCCC---CChhHHHHHHHHHHHHHHHcCCCccCEEEEcC--CeE
Confidence            443322211   111110 1122345688899999999986644  543

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.05  E-value=8.5e-06  Score=75.75  Aligned_cols=71  Identities=17%  Similarity=0.210  Sum_probs=48.9

Q ss_pred             CCCEEEEEEecCCCHHhHHHH---H--HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311          345 RRKNVLLLISDLDISQEELSI---L--EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY  419 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~---L--~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~  419 (570)
                      .||+|+|+|+|.||++|+.+-   +  .++.+.+++       +|..|-+.+       ++.                  
T Consensus        41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~-------~fv~v~~d~-------~~~------------------   88 (153)
T 2dlx_A           41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-------HFIFWQVYH-------DSE------------------   88 (153)
T ss_dssp             HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-------TEEEEEEES-------SSH------------------
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc-------CeEEEEEec-------CCH------------------
Confidence            489999999999999999874   1  344444432       354444432       110                  


Q ss_pred             cccccChHHHHHHHHhCCCCCCceEEEECCC-CcEEc
Q 008311          420 HPTLIDRAVIRYVKDVWHFKNKPILVVLDPQ-GRVVS  455 (570)
Q Consensus       420 fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpq-GkVv~  455 (570)
                             + ...+.+.|++.+.|+++++|++ |+.+.
T Consensus        89 -------~-~~~l~~~y~v~~~P~~~fld~~~G~~l~  117 (153)
T 2dlx_A           89 -------E-GQRYIQFYKLGDFPYVSILDPRTGQKLV  117 (153)
T ss_dssp             -------H-HHHHHHHHTCCSSSEEEEECTTTCCCCE
T ss_pred             -------h-HHHHHHHcCCCCCCEEEEEeCCCCcEee
Confidence                   1 1245678999999999999998 87654

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.03  E-value=1.9e-05  Score=81.14  Aligned_cols=67  Identities=15%  Similarity=0.157  Sum_probs=46.5

Q ss_pred             CCCEEEEEEecCCCHHhHHHH---------HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCc
Q 008311          345 RRKNVLLLISDLDISQEELSI---------LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPW  415 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~---------L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW  415 (570)
                      ++++|+|+|||+||+ |+.+.         +.++.++++      +.++.++-|..        +..             
T Consensus        27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~------~~~v~~~~Vd~--------~~~-------------   78 (350)
T 1sji_A           27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLE------HKDIGFVMVDA--------KKE-------------   78 (350)
T ss_dssp             TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGG------GSSEEEEEEET--------TTT-------------
T ss_pred             hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHh------hcCcEEEEEeC--------CCC-------------
Confidence            579999999999999 96442         344444443      12566666653        111             


Q ss_pred             eeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          416 YTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       416 ~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                                    ..+.++|+|+++||++++ ++|++.
T Consensus        79 --------------~~l~~~~~v~~~Pt~~~~-~~g~~~  102 (350)
T 1sji_A           79 --------------AKLAKKLGFDEEGSLYVL-KGDRTI  102 (350)
T ss_dssp             --------------HHHHHHHTCCSTTEEEEE-ETTEEE
T ss_pred             --------------HHHHHhcCCCccceEEEE-ECCcEE
Confidence                          136778999999999999 778854

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.00  E-value=1.4e-05  Score=85.91  Aligned_cols=59  Identities=7%  Similarity=0.034  Sum_probs=45.3

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhC---CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTA---RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~---~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+|.+.++|.+. |++|+.+.|.+.+++++.   +.++-++.|..+..  ...+ +++-++||+++
T Consensus       375 ~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~--~~~~-~~v~~~Pt~~~  437 (504)
T 2b5e_A          375 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEN--DVRG-VVIEGYPTIVL  437 (504)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGC--CCSS-CCCSSSSEEEE
T ss_pred             CCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCcc--cccc-CCceecCeEEE
Confidence            588999999999 999999999999998752   34666666655443  3444 88889999875

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=97.96  E-value=7.9e-06  Score=70.00  Aligned_cols=69  Identities=12%  Similarity=0.062  Sum_probs=41.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccccc
Q 008311          345 RRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLI  424 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~  424 (570)
                      +++.|++ |||+|||+|+...  .+.+++.       ..|+++-|..        +....                    
T Consensus        18 ~~~~vv~-f~a~~C~~C~~~~--~~l~~~~-------~~~~~v~v~~--------~~~~~--------------------   59 (116)
T 2e7p_A           18 SSAPVVV-FSKTYCGYCNRVK--QLLTQVG-------ASYKVVELDE--------LSDGS--------------------   59 (116)
T ss_dssp             TSSSEEE-EECTTCHHHHHHH--HHHHHHT-------CCCEEEEGGG--------STTHH--------------------
T ss_pred             cCCCEEE-EECCCChhHHHHH--HHHHHcC-------CCeEEEEccC--------CCChH--------------------
Confidence            4566666 9999999999876  2223332       2354443321        11111                    


Q ss_pred             ChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          425 DRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       425 D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                        +....+.+.|++.++|++ ++  +|+++..
T Consensus        60 --~~~~~l~~~~~v~~~Pt~-~~--~g~~v~~   86 (116)
T 2e7p_A           60 --QLQSALAHWTGRGTVPNV-FI--GGKQIGG   86 (116)
T ss_dssp             --HHHHHHHHHHSCCSSCEE-EE--TTEEEEC
T ss_pred             --HHHHHHHHHhCCCCcCEE-EE--CCEEECC
Confidence              112347778999999999 44  6887753

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=97.91  E-value=9.4e-06  Score=87.34  Aligned_cols=67  Identities=16%  Similarity=0.194  Sum_probs=48.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||+||+.+.  +.++.++++.    .+.++.++.|..        +.         .           
T Consensus       375 ~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~v~~~~vd~--------~~---------~-----------  422 (504)
T 2b5e_A          375 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYAN----ATSDVLIAKLDH--------TE---------N-----------  422 (504)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHH----HCSSCEEEEEEG--------GG---------C-----------
T ss_pred             CCCCEEEEEECCCChhHHHHhHHHHHHHHHhhc----cCCcEEEEEecC--------Cc---------c-----------
Confidence            489999999999999999999  9999988862    123455555542        10         0           


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                        +      +.. |+++++||++++ ++|+.
T Consensus       423 --~------~~~-~~v~~~Pt~~~~-~~G~~  443 (504)
T 2b5e_A          423 --D------VRG-VVIEGYPTIVLY-PGGKK  443 (504)
T ss_dssp             --C------CSS-CCCSSSSEEEEE-CCTTS
T ss_pred             --c------ccc-CCceecCeEEEE-eCCce
Confidence              1      112 789999999999 78865

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.88  E-value=8.1e-05  Score=68.36  Aligned_cols=35  Identities=3%  Similarity=0.006  Sum_probs=29.8

Q ss_pred             eeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHH
Q 008311          339 VNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNES  373 (570)
Q Consensus       339 Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~el  373 (570)
                      ..+..-.||++++.||+.|||+|+.+.  |.++++++
T Consensus        15 ~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~   51 (175)
T 3gyk_A           15 PVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDAD   51 (175)
T ss_dssp             CEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHC
T ss_pred             CCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhC
Confidence            345566899999999999999999999  88888765

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.61  E-value=0.00021  Score=66.95  Aligned_cols=41  Identities=12%  Similarity=0.010  Sum_probs=34.3

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      -.||++++.||+.|||+|+.+.  |.++.+++.       ++++++.+|+
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~-------~~v~~~~~~~   65 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAP-------QDVVLKQVPI   65 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCC-------TTEEEEEEEC
T ss_pred             CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCC-------CCeEEEEEec
Confidence            4689999999999999999998  777766653       3688999997

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.53  E-value=0.0004  Score=66.84  Aligned_cols=92  Identities=11%  Similarity=0.046  Sum_probs=51.4

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChh------------hHHHHHHHH
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDP------------TQKKFETLQ  410 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~------------~~~~F~~~~  410 (570)
                      .||++++.||+.|||+|+.+.  |.++ .+         .++.|+++.+ .......+.            ..+.|.+.+
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~-~~---------~~v~v~~~~~-p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~  153 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEY-ND---------LGITVRYLAF-PRAGMNNQTAKQMEAIWTAKDPVFALNEAE  153 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHH-HH---------TTEEEEEEEC-CSSTTCSHHHHHHHHHHHSSSHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHH-Hh---------CCcEEEEEEC-CccCCCchHHHHHHHHHhCcCHHHHHHHHH
Confidence            579999999999999999998  7763 22         1366666532 100000111            112233322


Q ss_pred             cCCCceeeccccc-cChHHHHHHHHhCCCCCCceEEEECCCCc
Q 008311          411 SSMPWYTVYHPTL-IDRAVIRYVKDVWHFKNKPILVVLDPQGR  452 (570)
Q Consensus       411 ~~MPW~aV~fP~l-~D~~~~~~L~~~y~V~~IPtlVVLDpqGk  452 (570)
                      ..-+   ++.... ...+....+.+.+||+|.|++++  .+|+
T Consensus       154 ~~~~---~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~  191 (211)
T 1t3b_A          154 KGNL---PKEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGE  191 (211)
T ss_dssp             TTCC---CSSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSC
T ss_pred             cCCC---CChHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCE
Confidence            2111   111000 01123456788999999999988  5676

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=97.53  E-value=6.7e-05  Score=60.67  Aligned_cols=62  Identities=15%  Similarity=0.137  Sum_probs=38.9

Q ss_pred             EEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccccChH
Q 008311          350 LLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRA  427 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D~~  427 (570)
                      +..||++|||+|+...  |.++.+++         +.++..+.+ |     .|..                      +  
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~---------~~~~~~~~v-~-----~~~~----------------------~--   44 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPS---------KYTVEIVHL-G-----TDKA----------------------R--   44 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTT---------TEEEEEEET-T-----TCSS----------------------T--
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhc---------CCeEEEEEe-c-----CChh----------------------h--
Confidence            4568999999999877  55543322         345555554 1     1100                      1  


Q ss_pred             HHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          428 VIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       428 ~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                        ..+.+.||++++|++++   +|+++.
T Consensus        45 --~~~~~~~gv~~vPt~~i---~g~~~~   67 (80)
T 2k8s_A           45 --IAEAEKAGVKSVPALVI---DGAAFH   67 (80)
T ss_dssp             --HHHHHHHTCCEEEEEEE---TTEEEE
T ss_pred             --HHHHHHcCCCcCCEEEE---CCEEEE
Confidence              12345689999999887   788654

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=97.52  E-value=0.00013  Score=58.77  Aligned_cols=64  Identities=9%  Similarity=0.126  Sum_probs=43.1

Q ss_pred             EEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccccChH
Q 008311          350 LLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRA  427 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D~~  427 (570)
                      ++.||++|||+|+...  |.++..+++        ++++..|.+        +.+.       .             .  
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--------~i~~~~vdi--------~~~~-------~-------------~--   44 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERD--------DFQYQYVDI--------RAEG-------I-------------T--   44 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS--------SCEEEEECH--------HHHT-------C-------------C--
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCC--------CceEEEEec--------ccCh-------H-------------H--
Confidence            5679999999999877  777665542        478888775        1110       0             0  


Q ss_pred             HHHHHHHhCC--CCCCceEEEECCCCcEEc
Q 008311          428 VIRYVKDVWH--FKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       428 ~~~~L~~~y~--V~~IPtlVVLDpqGkVv~  455 (570)
                       ...+.+.++  +.++|++++   +|+.+.
T Consensus        45 -~~~l~~~~~~~~~~vP~i~~---~g~~i~   70 (85)
T 1ego_A           45 -KEDLQQKAGKPVETVPQIFV---DQQHIG   70 (85)
T ss_dssp             -SHHHHHHTCCCSCCSCEEEE---TTEEEE
T ss_pred             -HHHHHHHhCCCCceeCeEEE---CCEEEE
Confidence             123666788  899999854   577764

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.49  E-value=0.00085  Score=65.93  Aligned_cols=105  Identities=6%  Similarity=-0.058  Sum_probs=57.9

Q ss_pred             eeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCCh---------hhH-HHH
Q 008311          339 VNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDD---------PTQ-KKF  406 (570)
Q Consensus       339 Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D---------~~~-~~F  406 (570)
                      +.+..-.+|++++.||+.|||+|+.+.  |.++.++         .++.|+++++--.. ..+.         .+. +.|
T Consensus        90 i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~---------g~v~v~~~~~p~~~-~~s~~~a~a~~~a~d~~~~~  159 (241)
T 1v58_A           90 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS---------GKVQLRTLLVGVIK-PESPATAAAILASKDPAKTW  159 (241)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT---------TSEEEEEEECCCSS-TTHHHHHHHHHHSSSHHHHH
T ss_pred             ceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC---------CcEEEEEEECCcCC-CcHHHHHHHHHHccCHHHHH
Confidence            333344789999999999999999988  6654431         25778777651000 0010         011 222


Q ss_pred             HHHHcCCCceeeccccccCh------HHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          407 ETLQSSMPWYTVYHPTLIDR------AVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~------~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                      +.+...+.--.+.-....+.      .....+.+.+||++.|++++.|.+|++
T Consensus       160 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~  212 (241)
T 1v58_A          160 QQYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL  212 (241)
T ss_dssp             HHHHHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred             HHHHHHhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence            22211110000000000000      122356788999999999999989975

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=97.48  E-value=0.00023  Score=74.09  Aligned_cols=73  Identities=11%  Similarity=0.110  Sum_probs=45.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHH-HH---HHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311          345 RRKNVLLLISDLDISQEELSI-LE---QIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH  420 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~-L~---~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f  420 (570)
                      .+++|+|+|||+||++|+..- |.   -.|++....- + +.++.++-|..        ++.                  
T Consensus        29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~-~-~~~v~~~~Vd~--------~~~------------------   80 (367)
T 3us3_A           29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVL-E-DKGVGFGLVDS--------EKD------------------   80 (367)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHH-T-TTTEEEEEEET--------TTT------------------
T ss_pred             hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHh-h-cCCceEEEEeC--------ccc------------------
Confidence            469999999999999984432 22   3444432211 1 23466665553        111                  


Q ss_pred             ccccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                               ..++++|+|+++||++++. +|+++.
T Consensus        81 ---------~~l~~~~~V~~~PTl~~f~-~G~~~~  105 (367)
T 3us3_A           81 ---------AAVAKKLGLTEEDSIYVFK-EDEVIE  105 (367)
T ss_dssp             ---------HHHHHHHTCCSTTEEEEEE-TTEEEE
T ss_pred             ---------HHHHHHcCCCcCceEEEEE-CCcEEE
Confidence                     1367789999999999886 577653

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=97.37  E-value=0.00029  Score=62.05  Aligned_cols=57  Identities=14%  Similarity=0.208  Sum_probs=46.4

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCC--CCEEEEEEecCCchhhhhhccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTAR--IPLEMVYVGKSTKRDKCGESWQPL  559 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~--~~fEiv~Vs~d~~~e~~~~~~~~~  559 (570)
                      ...||.+.|||.+. |++|+.+.+.+.+++++.+  ..+++++|+.|.+.+.++++++..
T Consensus        25 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~   84 (144)
T 1i5g_A           25 SLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKM   84 (144)
T ss_dssp             GGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTC
T ss_pred             HcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhC
Confidence            46899999999888 9999999999999998643  689999999998765554444433

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=97.36  E-value=0.00045  Score=60.55  Aligned_cols=58  Identities=17%  Similarity=0.200  Sum_probs=47.1

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCC--CCEEEEEEecCCchhhhhhccccc
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTAR--IPLEMVYVGKSTKRDKCGESWQPL  559 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~--~~fEiv~Vs~d~~~e~~~~~~~~~  559 (570)
                      ....||.+.|||.+. |++|+.+.+.+.+++++.+  .++++++|+.|.+.+.++++++..
T Consensus        24 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~   84 (144)
T 1o73_A           24 GSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKM   84 (144)
T ss_dssp             GGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTC
T ss_pred             HHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhC
Confidence            346899999999888 9999999999999997633  689999999998766555554443

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=97.35  E-value=0.00031  Score=62.16  Aligned_cols=56  Identities=18%  Similarity=0.224  Sum_probs=45.6

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCC--CCEEEEEEecCCchhhhhhcccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTAR--IPLEMVYVGKSTKRDKCGESWQP  558 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~--~~fEiv~Vs~d~~~e~~~~~~~~  558 (570)
                      ...||.+.|||.+. |++|+.+.+.+.+++++.+  .++++++|+.|.+.+.++++++.
T Consensus        25 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~   83 (146)
T 1o8x_A           25 SLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAK   83 (146)
T ss_dssp             GGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTT
T ss_pred             HhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHH
Confidence            46899999999888 9999999999999998643  68999999999876544444433

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.35  E-value=0.00052  Score=64.07  Aligned_cols=40  Identities=8%  Similarity=-0.090  Sum_probs=33.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      .||++++.||+.|||+|+.+.  |.++.+++.       .++.++.+|+
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~-------~~v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLP-------ADVHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCC-------TTEEEEEEEC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCC-------CCeEEEEEeh
Confidence            789999999999999999998  777666552       3688888886

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=97.24  E-value=0.00038  Score=58.49  Aligned_cols=16  Identities=19%  Similarity=0.127  Sum_probs=13.8

Q ss_pred             EEEEecCCCHHhHHHH
Q 008311          350 LLLISDLDISQEELSI  365 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~  365 (570)
                      ++.|||+||+||+...
T Consensus         3 vv~f~a~~C~~C~~~~   18 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAV   18 (87)
T ss_dssp             EEEEECSSCHHHHHHH
T ss_pred             EEEEECCCCchHHHHH
Confidence            5679999999999765

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=97.23  E-value=0.00045  Score=63.28  Aligned_cols=63  Identities=14%  Similarity=0.139  Sum_probs=49.4

Q ss_pred             ccccccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCC--CCEEEEEEecCCchhhhhhccccccc
Q 008311          499 VLDWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTAR--IPLEMVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       499 i~~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~--~~fEiv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      +.-....||.+.|||.+. |++|+.+.+.+.++|++.+  ..+++++|+.|.+.+.+++.++..++
T Consensus        41 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~  106 (165)
T 3s9f_A           41 ADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPW  106 (165)
T ss_dssp             ECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSS
T ss_pred             ccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCC
Confidence            333346899999999888 9999999999999998633  58999999999987655555544433

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=97.21  E-value=0.00028  Score=62.53  Aligned_cols=67  Identities=9%  Similarity=0.070  Sum_probs=47.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+++|+++|||+ |+||+...  |.++-++++       .++.++.|.+        |+                  +| 
T Consensus        22 ~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~-------gk~~f~~vd~--------d~------------------~~-   66 (133)
T 2djk_A           22 AGIPLAYIFAET-AEERKELSDKLKPIAEAQR-------GVINFGTIDA--------KA------------------FG-   66 (133)
T ss_dssp             TTSCEEEEECSC-SSSHHHHHHHHHHHHHSST-------TTSEEEEECT--------TT------------------TG-
T ss_pred             CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhC-------CeEEEEEEch--------HH------------------hH-
Confidence            357899999999 89999655  767666653       3577888864        21                  11 


Q ss_pred             ccChHHHHHHHHhCCCCC--CceEEEECC-CCcEE
Q 008311          423 LIDRAVIRYVKDVWHFKN--KPILVVLDP-QGRVV  454 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~--IPtlVVLDp-qGkVv  454 (570)
                              .+.+.||+++  +|++++++. +|+..
T Consensus        67 --------~~a~~~gi~~~~iPtl~i~~~~~g~~~   93 (133)
T 2djk_A           67 --------AHAGNLNLKTDKFPAFAIQEVAKNQKF   93 (133)
T ss_dssp             --------GGTTTTTCCSSSSSEEEEECTTTCCBC
T ss_pred             --------HHHHHcCCCcccCCEEEEEecCcCccc
Confidence                    1455699999  999999984 67663

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=97.19  E-value=0.00069  Score=55.89  Aligned_cols=64  Identities=6%  Similarity=0.087  Sum_probs=54.2

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      +++.+.+||.++ |++|+.+.+.+.+++++.+..+.++.|..|+..+ +.+.+++-..|++++  +|+
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~~~~~~G~   84 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPS-TAAKYEVMSIPTLIVFKDGQ   84 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHTTCCSBSEEEEEETTE
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHH-HHHhCCCcccCEEEEEeCCe
Confidence            789999999888 9999999999999998877679999999887765 455678889999876  553

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=97.18  E-value=0.00057  Score=59.93  Aligned_cols=35  Identities=23%  Similarity=0.201  Sum_probs=26.0

Q ss_pred             EEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          348 NVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       348 vVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      .+++.||+.|||+|+...  |.++-+++         ++++.-|.|
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~---------~i~~~~vDI   66 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKS---------WFELEVINI   66 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHS---------CCCCEEEET
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhc---------CCeEEEEEC
Confidence            568889999999999877  66665543         366666665

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=97.16  E-value=0.00086  Score=55.75  Aligned_cols=65  Identities=9%  Similarity=0.069  Sum_probs=54.1

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..||.+.++|.++ |++|+.+.+.+.+++++.+.++.++.|..|+..+ +.+.+++-..|++++  +|+
T Consensus        18 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~~~~~~G~   85 (108)
T 2trx_A           18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPTLLLFKNGE   85 (108)
T ss_dssp             TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT-HHHHTTCCSSSEEEEEETTE
T ss_pred             hcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHH-HHHHcCCcccCEEEEEeCCE
Confidence            4688999999888 9999999999999998866679999998887654 555678889999987  664

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=97.16  E-value=0.00041  Score=64.98  Aligned_cols=62  Identities=13%  Similarity=0.170  Sum_probs=53.1

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcc--cccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESW--QPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~--~~~~~~~~~~  566 (570)
                      ..||.+.++|++. |+|||.+.|.+.+++++.+ +++++.|+-|...+.++++.  ++.++|++++
T Consensus        52 ~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~  116 (167)
T 1z6n_A           52 IERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLV  116 (167)
T ss_dssp             CCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEE
T ss_pred             hCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEE
Confidence            4689999999999 9999999999999987643 79999999988877777765  5889999765

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.14  E-value=0.0013  Score=61.22  Aligned_cols=40  Identities=10%  Similarity=-0.208  Sum_probs=34.0

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      +||++++.||+.|||+|+.+.  |.++.++++       .++.+..+|+
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~-------~~v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALP-------SDAYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSC-------TTEEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCC-------CceEEEEecc
Confidence            689999999999999999988  888877763       3688888886

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=97.11  E-value=0.00085  Score=55.67  Aligned_cols=65  Identities=9%  Similarity=0.099  Sum_probs=53.3

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..||.+.++|.+. |++|+.+.+.+.+++++.+..+.++.|..|+..+ +.+.+++-..|++++  +|+
T Consensus        17 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~~~~~~G~   84 (107)
T 1dby_A           17 ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN-VASEYGIRSIPTIMVFKGGK   84 (107)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHHTCCSSCEEEEESSSS
T ss_pred             cCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH-HHHHCCCCcCCEEEEEeCCE
Confidence            3578888888887 9999999999999998766679999999887654 445568889999877  664

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=97.11  E-value=0.00073  Score=56.68  Aligned_cols=65  Identities=12%  Similarity=0.148  Sum_probs=53.6

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..||.+.++|.+. |++|+.+.+.+.+++++.+..+.++.|..|...+ +.+.+++-..|++++  +|+
T Consensus        21 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~~~~~~G~   88 (112)
T 1t00_A           21 KNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPG-TAAKYGVMSIPTLNVYQGGE   88 (112)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             hCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHH-HHHhCCCCcccEEEEEeCCE
Confidence            4688888888888 9999999999999998866679999999887655 455578889999887  553

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=97.09  E-value=0.0011  Score=54.74  Aligned_cols=64  Identities=11%  Similarity=0.057  Sum_probs=53.8

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      +|+.+.+||.++ |++|+.+.+.+.+++++.+.++.++.|..|+..+ +.+.+++-..|++++  +|+
T Consensus        19 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~~~~~~G~   85 (106)
T 1xwb_A           19 SGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECED-IAMEYNISSMPTFVFLKNGV   85 (106)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             CCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHH-HHHHcCCCcccEEEEEcCCc
Confidence            688999999888 9999999999999988866789999999887654 555678889999987  554

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=97.09  E-value=0.00066  Score=59.10  Aligned_cols=67  Identities=9%  Similarity=0.031  Sum_probs=56.3

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ...+||.+.++|.+. |++|+.+.+.+.+++++.+.++.++.|..|+.. ++.+.+++-++|++++  +|+
T Consensus        38 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~  107 (128)
T 3ul3_B           38 VNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNE-SLARKFSVKSLPTIILLKNKT  107 (128)
T ss_dssp             TTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCH-HHHHHTTCCSSSEEEEEETTE
T ss_pred             HHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCH-HHHHHcCCCCcCEEEEEECCE
Confidence            346899999999888 999999999999999876678999999988765 4556678999999887  554

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=97.07  E-value=0.00082  Score=56.55  Aligned_cols=64  Identities=5%  Similarity=-0.051  Sum_probs=53.2

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      .||.+.++|.+. |++|+.+.+.+.+++++.+ ++.++.|..++....+.+.+++-.+|++++  +|+
T Consensus        23 ~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~   89 (111)
T 2pu9_C           23 GDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENS   89 (111)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSTTHHHHHHHCCSBSSEEEEESSSS
T ss_pred             CCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC-CeEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCc
Confidence            588899999888 9999999999999988744 478888888766667777889999999887  554

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.06  E-value=0.0068  Score=55.45  Aligned_cols=49  Identities=8%  Similarity=-0.012  Sum_probs=39.0

Q ss_pred             eeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          338 RVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       338 ~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      .+.+..-.+|++++.|+..|||+|+.+.  +.++.+++.+     +.++.|++.++
T Consensus        19 ~~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-----~~~v~~~~~~~   69 (175)
T 1z6m_A           19 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVK-----SGKVERIIKLF   69 (175)
T ss_dssp             SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH-----TTSEEEEEEEC
T ss_pred             CcccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhh-----CCcEEEEEEeC
Confidence            3455566899999999999999999998  8888887742     23688888876

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=97.05  E-value=0.00093  Score=55.23  Aligned_cols=66  Identities=8%  Similarity=0.094  Sum_probs=54.0

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ...||.+.++|.++ |++|+.+.+.+.+++++.+..+.++.|..|+..+ +.+.+++-..|++++  +|+
T Consensus        14 ~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~-~~~~~~v~~~Pt~~~~~~G~   82 (105)
T 1nsw_A           14 IQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE-TTSQFGIMSIPTLILFKGGR   82 (105)
T ss_dssp             HSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             HhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHH-HHHHcCCccccEEEEEeCCe
Confidence            34678888888888 9999999999999998866679999998887654 555678889999887  664

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=97.03  E-value=0.00069  Score=57.46  Aligned_cols=64  Identities=6%  Similarity=0.091  Sum_probs=53.8

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      .||.+.++|.++ |++|+.+.+.+.+++++.+.++.++.|..|+..+ +.+.+++-.+|++++  +|+
T Consensus        16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~~G~   82 (112)
T 2voc_A           16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQE-TAGKYGVMSIPTLLVLKDGE   82 (112)
T ss_dssp             SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCS-HHHHTTCCSBSEEEEEETTE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHH-HHHHcCCCcccEEEEEeCCE
Confidence            789999999888 9999999999999998765579999999887654 455568889999987  665

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=97.02  E-value=0.00082  Score=57.96  Aligned_cols=66  Identities=12%  Similarity=0.146  Sum_probs=54.9

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEe--cCCchhhhhhcccccccccccc---CCC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVG--KSTKRDKCGESWQPLQLKSLVT---SGK  569 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs--~d~~~e~~~~~~~~~~~~~~~~---~~~  569 (570)
                      ..+||.+.++|.+. |++|+.+.+.+.+++++.+..+.++.|.  .|... .+.+.+++..+|++++   +|+
T Consensus        23 ~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~-~~~~~~~v~~~Pt~~~~~~~G~   94 (126)
T 2l57_A           23 AKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNI-DLAYKYDANIVPTTVFLDKEGN   94 (126)
T ss_dssp             CCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHH-HHHHHTTCCSSSEEEEECTTCC
T ss_pred             HhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchH-HHHHHcCCcceeEEEEECCCCC
Confidence            46789999999888 9999999999999998866789999999  65443 4566678899999988   675

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=97.01  E-value=0.00063  Score=54.08  Aligned_cols=59  Identities=5%  Similarity=0.044  Sum_probs=48.1

Q ss_pred             EEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          510 FLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       510 ~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      .++|++. |++|+.+.+.+.+++++.+.+++++.|.-|+..+- .+.+++...|+++++|+
T Consensus         5 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~-~~~~~v~~~Pt~~~~G~   64 (85)
T 1nho_A            5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREK-AIEYGLMAVPAIAINGV   64 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGG-GGGTCSSCSSEEEETTT
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHH-HHhCCceeeCEEEECCE
Confidence            3556666 99999999999999887666789999988876654 44568889999999886

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=96.99  E-value=0.00069  Score=53.83  Aligned_cols=60  Identities=12%  Similarity=0.108  Sum_probs=48.7

Q ss_pred             EEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      ..++|++. |++|+++.+.+.+++++.+.+++++.|.-|+..+ +.+-+++-..|+++++|+
T Consensus         5 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~~G~   65 (85)
T 1fo5_A            5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ-KAMEYGIMAVPTIVINGD   65 (85)
T ss_dssp             EEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC-TTTSTTTCCSSEEEETTE
T ss_pred             EEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHH-HHHHCCCcccCEEEECCE
Confidence            45566666 9999999999999988877789999999887664 445568889999999875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.99  E-value=0.001  Score=72.35  Aligned_cols=67  Identities=9%  Similarity=-0.011  Sum_probs=48.1

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      +.+++++..||++|||||+...  |.++-.++        .++++.-|.+        +.                  + 
T Consensus       115 ~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~--------~~v~~~~vd~--------~~------------------~-  159 (521)
T 1hyu_A          115 IDGDFEFETYYSLSCHNCPDVVQALNLMAVLN--------PRIKHTAIDG--------GT------------------F-  159 (521)
T ss_dssp             CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC--------TTEEEEEEET--------TT------------------C-
T ss_pred             cCCCcceEEEECCCCcCcHHHHHHHHHHHhHc--------CceEEEEEec--------hh------------------h-
Confidence            4577889999999999999876  66654432        2466666653        10                  1 


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                              ..+.++|++.++|++++   +|+.+..
T Consensus       160 --------~~~~~~~~i~svPt~~i---~g~~~~~  183 (521)
T 1hyu_A          160 --------QNEITERNVMGVPAVFV---NGKEFGQ  183 (521)
T ss_dssp             --------HHHHHHTTCCSSSEEEE---TTEEEEE
T ss_pred             --------HHHHHHhCCCccCEEEE---CCEEEec
Confidence                    13677799999999987   8888754

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=96.99  E-value=0.0013  Score=54.19  Aligned_cols=65  Identities=11%  Similarity=0.101  Sum_probs=53.4

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..|+.+.++|.++ |++|+.+.+.+.+++++.+..+.++.|..|+..+ +.+.+++-..|++++  +|+
T Consensus        18 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~~~~~~G~   85 (107)
T 2i4a_A           18 KASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPE-TPNAYQVRSIPTLMLVRDGK   85 (107)
T ss_dssp             TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCH-HHHHTTCCSSSEEEEEETTE
T ss_pred             hCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHH-HHHhcCCCccCEEEEEeCCE
Confidence            4688899999888 9999999999999988765579999999887654 445567889999887  664

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=96.98  E-value=0.00087  Score=57.51  Aligned_cols=64  Identities=5%  Similarity=-0.046  Sum_probs=53.0

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      +||.+.++|.++ |++|+.+.+.+.+++++.+ ++.++.|..++....+.+.+++-.+|++++  +|+
T Consensus        36 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~  102 (124)
T 1faa_A           36 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENS  102 (124)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSTTHHHHHHHCCSSSSEEEEEETTE
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC-CCEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCc
Confidence            688888999888 9999999999999987743 477888888766667778889999999887  554

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=96.98  E-value=0.001  Score=57.13  Aligned_cols=65  Identities=6%  Similarity=0.038  Sum_probs=53.9

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..||.+.|||.++ |++|+.+.+.+.+++++.+.++.++.|..|+..+ +.+.+++-..|++++  +|+
T Consensus        29 ~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~-l~~~~~v~~~Pt~~~~~~G~   96 (119)
T 1w4v_A           29 NSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTD-LAIEYEVSAVPTVLAMKNGD   96 (119)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             cCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHH-HHHHcCCCcccEEEEEeCCc
Confidence            3678888999888 9999999999999998766679999998887654 556678889999987  664

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=96.97  E-value=0.001  Score=55.38  Aligned_cols=65  Identities=12%  Similarity=0.155  Sum_probs=54.3

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..++.+.++|.+. |++|+.+.+.+.+++++.+..+.++.|.-|+.. .+.+.+++-.+|++++  +|+
T Consensus        20 ~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~g~   87 (111)
T 3gnj_A           20 DEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEK-TLFQRFSLKGVPQILYFKDGE   87 (111)
T ss_dssp             TSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCH-HHHHHTTCCSSCEEEEEETTE
T ss_pred             hcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcCh-hHHHhcCCCcCCEEEEEECCE
Confidence            4678889999888 999999999999999887768999999988765 4556678889999877  564

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=96.96  E-value=0.0012  Score=54.31  Aligned_cols=64  Identities=3%  Similarity=-0.011  Sum_probs=52.5

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      .+|.+.++|.+. |++|+.+.+.+.+++++.+.++.++.|..|+..+ +.+.+++-..|++++  +|+
T Consensus        17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~~~~~~g~   83 (105)
T 1fb6_A           17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG-IATQYNIRSIPTVLFFKNGE   83 (105)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHH-HHHhCCCCcccEEEEEeCCe
Confidence            578888888777 9999999999999998866679999998887654 455678889999887  554

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=96.95  E-value=0.0013  Score=55.11  Aligned_cols=65  Identities=12%  Similarity=0.055  Sum_probs=53.5

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..|+.+.+||.++ |++|+.+.+.+.+++++.+..+.++.|..|+..+ +.+.+++-..|++++  +|+
T Consensus        23 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~-~~~~~~v~~~Pt~~~~~~G~   90 (115)
T 1thx_A           23 KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT-TVKKYKVEGVPALRLVKGEQ   90 (115)
T ss_dssp             TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             cCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHH-HHHHcCCCceeEEEEEcCCE
Confidence            4688888888888 9999999999999998766679999999887654 455568889999887  554

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=96.95  E-value=0.0012  Score=54.43  Aligned_cols=65  Identities=6%  Similarity=0.085  Sum_probs=53.9

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..||.+.+||.++ |++|+.+.+.+.+++++.+.++.++.|..|+..+ +.+.+++-..|++++  +|+
T Consensus        16 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~~~~~~g~   83 (109)
T 2yzu_A           16 GQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPK-TAMRYRVMSIPTVILFKDGQ   83 (109)
T ss_dssp             HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHh-HHHhCCCCcCCEEEEEeCCc
Confidence            4688889999888 9999999999999998766679999999887654 555678889999887  664

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=96.95  E-value=0.0014  Score=57.53  Aligned_cols=65  Identities=9%  Similarity=0.069  Sum_probs=54.5

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..||.+.++|.+. |++|+.+.+.+.+++++.+.++.++.|..|+..+ +.+.+++-.+|++++  +|+
T Consensus        38 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~~G~  105 (128)
T 2o8v_B           38 KADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPTLLLFKNGE  105 (128)
T ss_dssp             TCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCT-TSGGGTCCSSSEEEEEETTE
T ss_pred             hcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHH-HHHHcCCCccCEEEEEeCCE
Confidence            4689999999888 9999999999999998866679999999887654 556678889999987  664

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=96.95  E-value=0.0011  Score=58.41  Aligned_cols=56  Identities=14%  Similarity=0.022  Sum_probs=46.8

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhcccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESWQP  558 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~~~  558 (570)
                      ...||.+.|+|.+. |++|+...+.+.++|++. +..++++.|+.|.+.+.+++.++.
T Consensus        29 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~   86 (143)
T 4fo5_A           29 NQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKI   86 (143)
T ss_dssp             CSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHH
T ss_pred             HhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHH
Confidence            35899999999888 999999999999999874 468999999999877666555544

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=96.95  E-value=0.0011  Score=56.06  Aligned_cols=65  Identities=9%  Similarity=0.072  Sum_probs=52.9

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      +.+||.+.++|.+. |++|+.+.+.+.+++++.+ .+.++.|..|...+ +.+.+++-.+|++++  +|+
T Consensus        21 ~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~-~~~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~~G~   88 (109)
T 3f3q_A           21 IAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGD-VAQKNEVSAMPTLLLFKNGK   88 (109)
T ss_dssp             TTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             HhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHH-HHHHcCCCccCEEEEEECCE
Confidence            45799999999888 9999999999999988743 37888888876654 556688999999987  553

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=96.94  E-value=0.0032  Score=58.42  Aligned_cols=41  Identities=12%  Similarity=0.007  Sum_probs=34.0

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      +.||++++.||..|||+|..+.  |.++.+++.       .+++++++|+
T Consensus        23 ~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~-------~~v~~~~~p~   65 (193)
T 2rem_A           23 LAGKIEVVEIFGYTCPHCAHFDSKLQAWGARQA-------KDVRFTLVPA   65 (193)
T ss_dssp             CTTCEEEEEEECTTCHHHHHHHHHHHHHHHTSC-------TTEEEEEEEC
T ss_pred             CCCCeEEEEEECCCChhHhhhhHHHHHHHHhcC-------CceEEEEeCc
Confidence            4789999999999999999998  777766552       3688888887

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=96.93  E-value=0.0013  Score=54.88  Aligned_cols=62  Identities=8%  Similarity=0.095  Sum_probs=46.2

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +.++|.+.+||.++ |++|+.+.|.+.+++++.+ ++.++.|..|+..+ +.+.+++.++|++++
T Consensus        15 ~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~~~~~-l~~~~~v~~~Pt~~~   77 (105)
T 4euy_A           15 IEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQE-IAGRYAVFTGPTVLL   77 (105)
T ss_dssp             TTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEECCC----------CCCCEEEE
T ss_pred             HhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECCCCHH-HHHhcCCCCCCEEEE
Confidence            35789999999988 9999999999999988753 68999998887654 555678889999876

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=96.92  E-value=0.0013  Score=55.79  Aligned_cols=65  Identities=11%  Similarity=0.155  Sum_probs=53.7

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      .+|+.+.+||.++ |++|+.+.+.+.+++++.+.++.++.|..|...+ +.+.+++-..|++++  +|+
T Consensus        28 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~i~~~Pt~~~~~~g~   95 (121)
T 2i1u_A           28 SSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE-TARNFQVVSIPTLILFKDGQ   95 (121)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHH-HHHhcCCCcCCEEEEEECCE
Confidence            4688888999888 9999999999999998766679999999887654 555678889999987  554

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=96.90  E-value=0.0011  Score=54.73  Aligned_cols=63  Identities=8%  Similarity=0.121  Sum_probs=52.9

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..+|+.+.+||.+. |++|+.+.+.+.+++++.+..+.++.|..|+..+ +.+.+++-..|++++
T Consensus        18 ~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~i~~~Pt~~~   81 (109)
T 3tco_A           18 IRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQK-IADKYSVLNIPTTLI   81 (109)
T ss_dssp             HHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHH-HHHHTTCCSSSEEEE
T ss_pred             HhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHH-HHHhcCcccCCEEEE
Confidence            45689999999888 9999999999999998877789999999887654 555678889999665

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=96.89  E-value=0.0011  Score=55.37  Aligned_cols=63  Identities=10%  Similarity=-0.019  Sum_probs=51.9

Q ss_pred             CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ||.+.++|.++ |++|+.+.+.+.+++++.+.++.++.|..|...+ +.+.+++-..|++++  +|+
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~~~~G~   89 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAA-VAEAAGITAMPTFHVYKDGV   89 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHH-HHHHHTCCBSSEEEEEETTE
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHH-HHHHcCCCcccEEEEEECCe
Confidence            88888888888 9999999999999988765578999998877554 555668889999887  564

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=96.87  E-value=0.0019  Score=56.17  Aligned_cols=64  Identities=9%  Similarity=0.117  Sum_probs=52.8

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..||.+.+||.+. |++|+.+.+.+.+++++.+ ++.++.|..|+.. ++.+.+++-.+|++++  +|+
T Consensus        36 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~  102 (124)
T 1xfl_A           36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELK-SVASDWAIQAMPTFMFLKEGK  102 (124)
T ss_dssp             HTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSH-HHHHHTTCCSSSEEEEEETTE
T ss_pred             hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECccCH-HHHHHcCCCccCEEEEEECCE
Confidence            3689999999888 9999999999999988754 6888888887654 4556678889999987  664

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=96.86  E-value=0.0015  Score=55.25  Aligned_cols=65  Identities=8%  Similarity=0.078  Sum_probs=52.9

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      +.+||.+.+||.++ |++|+.+.+.+.+++++.+ ++.++.|..|+..+ +.+.+++-..|++++  +|+
T Consensus        23 ~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~-~~~~~~v~~~Pt~~~~~~G~   90 (112)
T 1syr_A           23 ISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSE-VTEKENITSMPTFKVYKNGS   90 (112)
T ss_dssp             HHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTTHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             HccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCCHH-HHHHcCCCcccEEEEEECCc
Confidence            35789999999888 9999999999999988744 58889998887654 445578889999987  564

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=96.84  E-value=0.0019  Score=53.87  Aligned_cols=64  Identities=13%  Similarity=0.159  Sum_probs=51.8

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..|+.+.++|.++ |++|+.+.+.+.+++++.+ ++.++.|..|+..+ +.+.+++-..|++++  +|+
T Consensus        24 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~-~~~~~~v~~~Pt~~~~~~G~   90 (113)
T 1ti3_A           24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKA-VAEEWNVEAMPTFIFLKDGK   90 (113)
T ss_dssp             TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHH-HHHHHHCSSTTEEEEEETTE
T ss_pred             hcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccccHH-HHHhCCCCcccEEEEEeCCE
Confidence            3688999999888 9999999999999987754 78889998887654 445567889999987  554

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=96.83  E-value=0.0012  Score=56.12  Aligned_cols=38  Identities=13%  Similarity=0.156  Sum_probs=25.5

Q ss_pred             CCCEEEEEEecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          345 RRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      ..++++++||+.|||+|+...  .+.+++.       .++++.-|.+
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~--~~L~~l~-------~~i~~~~vdi   51 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAK--EVLQPYK-------DRFILQEVDI   51 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHH--HHTSTTS-------SSSEEEEEET
T ss_pred             CCCCEEEEEeCCCCcchHHHH--HHHHHhh-------hCCeEEEEEC
Confidence            346678889999999998764  2223332       2367777775

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=96.80  E-value=0.0019  Score=55.39  Aligned_cols=63  Identities=6%  Similarity=0.011  Sum_probs=52.1

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      .||.+.|+|.+. |++|+.+.+.+.+++++.+. +.++.|..|+.. ++.+.+++-.+|++++  +|+
T Consensus        30 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~   95 (116)
T 3qfa_C           30 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQ-DVASECEVKSMPTFQFFKKGQ   95 (116)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTTTH-HHHHHTTCCSSSEEEEESSSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCH-HHHHHcCCccccEEEEEeCCe
Confidence            689999999888 99999999999999887544 888889888765 4556678999999887  553

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=96.76  E-value=0.0021  Score=53.00  Aligned_cols=60  Identities=7%  Similarity=-0.018  Sum_probs=50.1

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +||.+.+||.++ |++|+.+.+.+.+++++.+. +.++.|..|+..+ +.+.+++-+.|++++
T Consensus        19 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~   79 (105)
T 3m9j_A           19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQD-VASESEVKSMPTFQF   79 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTTCHH-HHHHTTCCBSSEEEE
T ss_pred             CCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhhhHH-HHHHcCCCcCcEEEE
Confidence            688999999888 99999999999999877433 8888888887654 555678999999887

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=96.76  E-value=0.0007  Score=61.37  Aligned_cols=64  Identities=23%  Similarity=0.275  Sum_probs=51.3

Q ss_pred             ccCCeEEEEEe-cCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecCCch----------hhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYG-GDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKSTKR----------DKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYf-gad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d~~~----------e~~~~~~~~~~~~~~~~  566 (570)
                      ..+||.+.||| |+. |++|+.+.+.+   .++.+..+.+|.++.|..++..          .++.+.+++-.+|++++
T Consensus        44 ~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~  122 (154)
T 2ju5_A           44 KQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVF  122 (154)
T ss_dssp             HHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEE
T ss_pred             HhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEE
Confidence            35789999999 577 99999999999   6765554567888888877653          46778889999999876

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=96.75  E-value=0.0022  Score=52.19  Aligned_cols=64  Identities=6%  Similarity=0.038  Sum_probs=52.1

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..|+.+.+||.++ |++|+.+.+.+.+++++.+. +.++.|..|+..+ +.+.+++-..|++++  +|+
T Consensus        14 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~~v~~~Pt~~~~~~g~   80 (104)
T 2e0q_A           14 ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENPD-IAARYGVMSLPTVIFFKDGE   80 (104)
T ss_dssp             HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHH-HHHHTTCCSSCEEEEEETTE
T ss_pred             hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCHH-HHHhCCccccCEEEEEECCe
Confidence            4688888988887 99999999999999887544 8899998887654 455668888999987  664

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=96.74  E-value=0.0011  Score=56.68  Aligned_cols=62  Identities=10%  Similarity=0.247  Sum_probs=48.2

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCch-----hhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKR-----DKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~-----e~~~~~~~~~~~~~~~~  566 (570)
                      +.+|+.+.+||++. |++|+.|.|.+.+++++.+.  .++++..++..     ..+.+.+++..+|++++
T Consensus        26 ~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~   93 (118)
T 1zma_A           26 LDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA--HIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVH   93 (118)
T ss_dssp             HHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC--CCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEE
T ss_pred             HhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC--eEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEE
Confidence            35688899999999 99999999999999876553  46677555433     35667788889999865

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=96.74  E-value=0.0024  Score=55.93  Aligned_cols=63  Identities=5%  Similarity=-0.067  Sum_probs=53.7

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ...||.+.|||.+. |++|+.+.+.+.+++++.+..+.++.|..|+..+ +.+.+++-.+|++++
T Consensus        48 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~~~  111 (141)
T 3hxs_A           48 YLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPE-LARDFGIQSIPTIWF  111 (141)
T ss_dssp             CCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHTTCCSSSEEEE
T ss_pred             HhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHH-HHHHcCCCCcCEEEE
Confidence            34789999999888 9999999999999998877789999999887654 556678899999876

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=96.74  E-value=0.0019  Score=55.45  Aligned_cols=65  Identities=9%  Similarity=0.074  Sum_probs=52.5

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..+||.+.++|.+. |++|+.+.+.+.+++++.+. +.++.|..|+..+ +.+.+++-.+|++++  +|+
T Consensus        27 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~~G~   94 (114)
T 2oe3_A           27 IKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDESPD-IAKECEVTAMPTFVLGKDGQ   94 (114)
T ss_dssp             HHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTTCHH-HHHHTTCCSBSEEEEEETTE
T ss_pred             HhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHH-HHHHCCCCcccEEEEEeCCe
Confidence            35788999999888 99999999999999887544 8888888877654 555668889999987  554

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=96.73  E-value=0.0022  Score=52.65  Aligned_cols=63  Identities=14%  Similarity=0.211  Sum_probs=51.1

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      +||.+.++|.++ |++|+.+.+.+.+++++.+ ++.++.|..|+..+ +.+.+++...|++++  +|+
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~-~~~~~~v~~~Pt~~~~~~g~   83 (104)
T 2vim_A           18 KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEE-AAAKYSVTAMPTFVFIKDGK   83 (104)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccCCHH-HHHHcCCccccEEEEEeCCc
Confidence            688888888777 9999999999999987754 68888888887654 555678889999887  553

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=96.71  E-value=0.0025  Score=57.16  Aligned_cols=60  Identities=15%  Similarity=0.009  Sum_probs=48.7

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhcccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQPLQLK  562 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~  562 (570)
                      ...||.+.|+|.+. |++|+...+.+.+++++ .+..++++.|+.|..++.++++.+.++++
T Consensus        32 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~   93 (152)
T 2lrt_A           32 DLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWV   93 (152)
T ss_dssp             TGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSE
T ss_pred             HhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCce
Confidence            35789999999888 99999999999999976 34469999999999888766665544444

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=96.71  E-value=0.0033  Score=53.56  Aligned_cols=63  Identities=13%  Similarity=-0.031  Sum_probs=49.2

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCch----------------------hhhhhccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKR----------------------DKCGESWQPL  559 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~----------------------e~~~~~~~~~  559 (570)
                      ...||.+.|+|.+. |++|+.+.+.+.+++++.+ +++++.|+.|++.                      ..+.+.+++.
T Consensus        22 ~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~  100 (136)
T 1zzo_A           22 SLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVT  100 (136)
T ss_dssp             GGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCC
T ss_pred             HhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCC
Confidence            45788888888777 9999999999999998866 8999999987643                      3444555666


Q ss_pred             ccccccc
Q 008311          560 QLKSLVT  566 (570)
Q Consensus       560 ~~~~~~~  566 (570)
                      .+|++++
T Consensus       101 ~~P~~~~  107 (136)
T 1zzo_A          101 QQPAYAF  107 (136)
T ss_dssp             SSSEEEE
T ss_pred             CCceEEE
Confidence            6777655

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.0018  Score=54.29  Aligned_cols=64  Identities=13%  Similarity=0.222  Sum_probs=49.8

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      .||.+.++|.++ |++|+.+.+.+.+++++. ..++.++.|..|...+ +.+.+++-.+|++++  +|+
T Consensus        20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~~~~G~   87 (112)
T 3d6i_A           20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSE-ISELFEISAVPYFIIIHKGT   87 (112)
T ss_dssp             TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHH-HHHHcCCCcccEEEEEECCE
Confidence            488999999888 999999999999998762 3458889998887654 455578899999887  564

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=96.68  E-value=0.00088  Score=58.33  Aligned_cols=63  Identities=13%  Similarity=0.135  Sum_probs=51.8

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHH--HHHhhCCCCEEEEEEecC--Cchhhhhhcccc---cccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAAR--SVANTARIPLEMVYVGKS--TKRDKCGESWQP---LQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~--~vy~~~~~~fEiv~Vs~d--~~~e~~~~~~~~---~~~~~~~~  566 (570)
                      .+||.+.|||+++ |++|+.+.+.+.  ++++..+.++.++.|..+  +...++.+.+++   ..+|++++
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~   97 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVV   97 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEE
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEE
Confidence            5799999999999 999999999999  887765557999999883  234456777888   89999875

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=96.67  E-value=0.003  Score=55.52  Aligned_cols=62  Identities=8%  Similarity=0.005  Sum_probs=51.7

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..||.+.++|.+. |++|+.+.+.+.+++++.+..+.++.|..|+..+ +.+.+++-.+|++++
T Consensus        36 ~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~   98 (136)
T 2l5l_A           36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQE-LAGAFGIRSIPSILF   98 (136)
T ss_dssp             CCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHTTCCSSCEEEE
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHH-HHHHcCCCCCCEEEE
Confidence            4678889999888 9999999999999998866679999999887654 555568889999875

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=96.67  E-value=0.0037  Score=53.55  Aligned_cols=63  Identities=11%  Similarity=0.040  Sum_probs=50.7

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCc---------------------hhhhhhcccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTK---------------------RDKCGESWQPLQ  560 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~---------------------~e~~~~~~~~~~  560 (570)
                      ...||.+.|+|.+. |++|+.+.+.+.+++++.+ +++++.|+.|++                     ...+.+.++...
T Consensus        21 ~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~   99 (136)
T 1lu4_A           21 SLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPW   99 (136)
T ss_dssp             GGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCS
T ss_pred             HhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCC
Confidence            45789888888777 9999999999999998866 899999998874                     344555567777


Q ss_pred             cccccc
Q 008311          561 LKSLVT  566 (570)
Q Consensus       561 ~~~~~~  566 (570)
                      +|++++
T Consensus       100 ~P~~~l  105 (136)
T 1lu4_A          100 QPAFVF  105 (136)
T ss_dssp             SSEEEE
T ss_pred             CCEEEE
Confidence            787654

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=96.66  E-value=0.0017  Score=57.51  Aligned_cols=65  Identities=8%  Similarity=-0.006  Sum_probs=54.0

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..++.+.++|.+. |++|+.|.+.+.+++++.+..+.++.|..|+..+ +.+.+++-.+|++++  +|+
T Consensus        22 ~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~~G~   89 (140)
T 3hz4_A           22 DSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPW-TAEKYGVQGTPTFKFFCHGR   89 (140)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHH-HHHHHTCCEESEEEEEETTE
T ss_pred             hCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHh-HHHHCCCCcCCEEEEEeCCc
Confidence            3588899999888 9999999999999998766679999999887654 556678899999987  554

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=96.66  E-value=0.0044  Score=55.12  Aligned_cols=54  Identities=13%  Similarity=-0.037  Sum_probs=45.8

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhcc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESW  556 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~  556 (570)
                      ...||.+.|+|.+. |++|+.+.+.+.+++++ .+..++++.|+.|++.+.+++++
T Consensus        31 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~   86 (165)
T 3or5_A           31 SLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYM   86 (165)
T ss_dssp             GGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHH
T ss_pred             HcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHH
Confidence            45899999999777 99999999999999976 34569999999998887777663

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=96.65  E-value=0.0013  Score=53.02  Aligned_cols=61  Identities=15%  Similarity=0.139  Sum_probs=48.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      +-+|.+..|++|+...+.+.++.++.+.+++++-|..|....+.-+-++...+|+++++|+
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i~g~   64 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVIDGA   64 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEETTE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEECCE
Confidence            5677777799999999999998877788899988887632333334568899999999886

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=96.65  E-value=0.0042  Score=54.47  Aligned_cols=55  Identities=9%  Similarity=0.134  Sum_probs=45.6

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHH---HHhh-CCCCEEEEEEecCCchhhhhhccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARS---VANT-ARIPLEMVYVGKSTKRDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~---vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~  557 (570)
                      ...||++.|+|-+. |++|+...+.+.+   +|++ .+..++++.|+.|++.+.+++.++
T Consensus        28 ~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~   87 (142)
T 3eur_A           28 QFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRN   87 (142)
T ss_dssp             TCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGG
T ss_pred             HcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHH
Confidence            45789999999777 9999999999999   8875 457899999999998777554433

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=96.63  E-value=0.005  Score=54.61  Aligned_cols=47  Identities=19%  Similarity=0.142  Sum_probs=40.3

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCch
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKR  549 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~  549 (570)
                      ...||.+.|+|.+. |++|+...+.+.+++++. +..++++.|+.|.+.
T Consensus        26 ~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~   74 (152)
T 2lrn_A           26 DFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRRE   74 (152)
T ss_dssp             GGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCH
T ss_pred             HcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCH
Confidence            45899999999887 999999999999999763 456999999999764

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=96.62  E-value=0.0025  Score=54.28  Aligned_cols=63  Identities=10%  Similarity=0.056  Sum_probs=51.1

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      +||.+.++|.++ |++|+.+.+.+.+++++.+. +.++.|..|+..+ +.+.+++-.+|++++  +|+
T Consensus        33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~~~~G~   98 (122)
T 2vlu_A           33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKP-IAEQFSVEAMPTFLFMKEGD   98 (122)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCCCHH-HHHHcCCCcccEEEEEeCCE
Confidence            588888888888 99999999999999877443 8888888887554 555678889999887  554

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=96.62  E-value=0.004  Score=54.78  Aligned_cols=64  Identities=11%  Similarity=0.104  Sum_probs=51.5

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchh----------------------hhhhcccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRD----------------------KCGESWQP  558 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e----------------------~~~~~~~~  558 (570)
                      ...||.+.|+|.+. |++|+.+.+.+.+++++. +..+.++.|+.|...+                      ++.+.+++
T Consensus        27 ~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (152)
T 2lja_A           27 DLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLI  106 (152)
T ss_dssp             TTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTC
T ss_pred             HcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCc
Confidence            45789999999887 999999999999999874 4579999999988764                      45556667


Q ss_pred             cccccccc
Q 008311          559 LQLKSLVT  566 (570)
Q Consensus       559 ~~~~~~~~  566 (570)
                      ..+|++++
T Consensus       107 ~~~P~~~l  114 (152)
T 2lja_A          107 NGIPRFIL  114 (152)
T ss_dssp             CSSCCEEE
T ss_pred             CCCCEEEE
Confidence            77777655

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=96.60  E-value=0.0029  Score=52.75  Aligned_cols=61  Identities=7%  Similarity=-0.101  Sum_probs=50.5

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+||.+.++|.+. |++|+.+.+.+.+++++. .++.++.|..|+..+ +.+.+++..+|++++
T Consensus        19 ~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~   80 (107)
T 1gh2_A           19 AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQCQG-TAATNNISATPTFQF   80 (107)
T ss_dssp             TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSHH-HHHHTTCCSSSEEEE
T ss_pred             CCCCEEEEEEECCCChhhHHHHHHHHHHHHHC-CCcEEEEEECccCHH-HHHhcCCCcccEEEE
Confidence            3688999999888 999999999999998875 368888888887554 556678889999876

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=96.59  E-value=0.0035  Score=54.17  Aligned_cols=62  Identities=10%  Similarity=0.044  Sum_probs=50.3

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCC-CCEEEEEEecCC------------------------chhhhhhcccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTAR-IPLEMVYVGKST------------------------KRDKCGESWQP  558 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~-~~fEiv~Vs~d~------------------------~~e~~~~~~~~  558 (570)
                      .||.+.|+|.+. |++|+.+.+.+.+++++.+ .+++++.|+.|.                        +...+.+.+++
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  112 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI  112 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence            889999999777 9999999999999998744 789999999875                        23456667777


Q ss_pred             cccccccc
Q 008311          559 LQLKSLVT  566 (570)
Q Consensus       559 ~~~~~~~~  566 (570)
                      ..+|++++
T Consensus       113 ~~~P~~~l  120 (145)
T 3erw_A          113 ITIPTSFL  120 (145)
T ss_dssp             CEESEEEE
T ss_pred             CccCeEEE
Confidence            78887543

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=96.59  E-value=0.0024  Score=53.76  Aligned_cols=63  Identities=11%  Similarity=0.113  Sum_probs=51.2

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      +||.+.++|.++ |++|+.+.+.+.+++++.+ ++.++.|..|+.. .+.+.+++-..|++++  +|+
T Consensus        27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~   92 (118)
T 2vm1_A           27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDELK-DVAEAYNVEAMPTFLFIKDGE   92 (118)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSH-HHHHHTTCCSBSEEEEEETTE
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcccCH-HHHHHcCCCcCcEEEEEeCCe
Confidence            588888888888 9999999999999988754 6888888887654 4556678889999987  664

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=96.58  E-value=0.0025  Score=49.88  Aligned_cols=56  Identities=18%  Similarity=0.147  Sum_probs=44.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|. ..|++|+.+.+.+.+++++.+.+++++.|.    ..+..+.+++..+|+++++|+
T Consensus         4 v~f~a-~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~----~~~~~~~~~v~~~Pt~~~~G~   59 (77)
T 1ilo_A            4 IQIYG-TGCANCQMLEKNAREAVKELGIDAEFEKIK----EMDQILEAGLTALPGLAVDGE   59 (77)
T ss_dssp             EEEEC-SSSSTTHHHHHHHHHHHHHTTCCEEEEEEC----SHHHHHHHTCSSSSCEEETTE
T ss_pred             EEEEc-CCChhHHHHHHHHHHHHHHcCCceEEEEec----CHHHHHHCCCCcCCEEEECCE
Confidence            33443 359999999999999998877789988887    345566778999999999885

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=96.55  E-value=0.0028  Score=54.99  Aligned_cols=64  Identities=6%  Similarity=-0.010  Sum_probs=50.3

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCC--------------------------chhhhhhc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKST--------------------------KRDKCGES  555 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~--------------------------~~e~~~~~  555 (570)
                      ...||.+.|+|.+. |++|+.+.+.+.+++++.+..++++.|+.|.                          ...++.+.
T Consensus        26 ~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  105 (148)
T 2b5x_A           26 LIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDA  105 (148)
T ss_dssp             HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHH
T ss_pred             hcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHH
Confidence            45788888888777 9999999999999998744449999998653                          23466677


Q ss_pred             ccccccccccc
Q 008311          556 WQPLQLKSLVT  566 (570)
Q Consensus       556 ~~~~~~~~~~~  566 (570)
                      +++..+|++++
T Consensus       106 ~~v~~~P~~~l  116 (148)
T 2b5x_A          106 FENEYVPAYYV  116 (148)
T ss_dssp             TCCCCSSEEEE
T ss_pred             hCCCCCCEEEE
Confidence            78888888765

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=96.53  E-value=0.0037  Score=54.42  Aligned_cols=54  Identities=15%  Similarity=0.158  Sum_probs=43.7

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHH---HHhh-CCCCEEEEEEecCCchhhhhhcc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARS---VANT-ARIPLEMVYVGKSTKRDKCGESW  556 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~---vy~~-~~~~fEiv~Vs~d~~~e~~~~~~  556 (570)
                      ...||.+.|+|.+. |++|+...+.+.+   ++++ .+..++++.|+.|.+.+.+++.+
T Consensus        24 ~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~   82 (142)
T 3ewl_A           24 RLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKA   82 (142)
T ss_dssp             GCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHH
T ss_pred             hcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHH
Confidence            45799999999888 9999999998887   7754 34569999999998877765443

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.52  E-value=0.0019  Score=56.49  Aligned_cols=66  Identities=9%  Similarity=0.178  Sum_probs=52.4

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC---CCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA---RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~---~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      +.++|.+.|+|.+. |++|+.+.+.+.+++++.   +.++.++.|..++.. .+.+.+++-.+|++++  +|+
T Consensus        31 ~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~  102 (140)
T 2dj1_A           31 VADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS-MLASKFDVSGYPTIKILKKGQ  102 (140)
T ss_dssp             HTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCH-HHHHHTTCCSSSEEEEEETTE
T ss_pred             HhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccH-HHHHHCCCCccCeEEEEECCc
Confidence            45789999999988 999999999999998652   335888888877664 4555678889999887  553

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=96.51  E-value=0.0042  Score=55.77  Aligned_cols=61  Identities=11%  Similarity=0.082  Sum_probs=51.8

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .|+.+.++|.+. |++|+.+.|.+.+++++.+..+.++.|.-|... .+.+.+++..+|++++
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~~~~~~i~~~Pt~~~   83 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVP-DFNKMYELYDPCTVMF   83 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCC-TTTTSSCSCSSCEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCH-HHHHHcCCCCCCEEEE
Confidence            589999999999 999999999999999876667999999888654 4566678889999864

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=96.51  E-value=0.0032  Score=53.48  Aligned_cols=62  Identities=6%  Similarity=0.090  Sum_probs=50.8

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      .||.+.++|.++ |++|+.+.+.+.+++++.  ++.++.|..|+..+ +.+.+++-..|++++  +|+
T Consensus        32 ~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~~~~G~   96 (117)
T 2xc2_A           32 KNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLEE-TARKYNISAMPTFIAIKNGE   96 (117)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTTSHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCccHH-HHHHcCCCccceEEEEeCCc
Confidence            688899999888 999999999999998765  77888888776544 555678889999887  564

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=96.50  E-value=0.007  Score=51.20  Aligned_cols=41  Identities=15%  Similarity=0.020  Sum_probs=37.4

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEE
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYV  543 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~V  543 (570)
                      ...||.+.|||.+. |++|+...+.+.+++++.+..+.++.|
T Consensus        19 ~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i   60 (138)
T 4evm_A           19 DYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTV   60 (138)
T ss_dssp             GGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEE
T ss_pred             HhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            45899999999888 999999999999999887888999999

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=96.50  E-value=0.0046  Score=54.33  Aligned_cols=51  Identities=14%  Similarity=0.026  Sum_probs=41.8

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhh
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKC  552 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~  552 (570)
                      ....||.+.|||.+. |++|+.+.+.+.+++++ .+..++++.|+.|.+.+..
T Consensus        24 ~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~   76 (152)
T 3gl3_A           24 SDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDA   76 (152)
T ss_dssp             GGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHH
T ss_pred             HHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHH
Confidence            346899999988777 99999999999999876 3445999999999776543

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=96.48  E-value=0.0059  Score=54.06  Aligned_cols=46  Identities=13%  Similarity=-0.046  Sum_probs=40.6

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTK  548 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~  548 (570)
                      ...||.+.|+|.+. |++|+...+.+.+++++ .+..++++.|+.|++
T Consensus        21 ~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~   68 (151)
T 3raz_A           21 SLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTS   68 (151)
T ss_dssp             GCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCH
T ss_pred             HhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCh
Confidence            46899999999888 99999999999999987 467899999999753

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=96.48  E-value=0.0037  Score=55.50  Aligned_cols=63  Identities=8%  Similarity=0.049  Sum_probs=53.9

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +..||.+.|+|.++ |++|+.+.+.+.+++++.+.++.++.|..|+..+ +.+.+++..+|++++
T Consensus        52 ~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~v~~~Pt~~~  115 (148)
T 3p2a_A           52 LQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPA-LSTRFRIRSIPTIML  115 (148)
T ss_dssp             TTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHTTCCSSSEEEE
T ss_pred             HhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHH-HHHHCCCCccCEEEE
Confidence            46789999999888 9999999999999998877779999998887654 556678999999876

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=96.48  E-value=0.0037  Score=52.87  Aligned_cols=65  Identities=9%  Similarity=0.102  Sum_probs=51.5

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      +.+++.+.++|.+. |++|+.+.+.+.+++++.+ ++.++.|..++..+ +.+.+++-.+|++++  +|+
T Consensus        16 ~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~~G~   83 (110)
T 2l6c_A           16 FEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARPE-LMKELGFERVPTLVFIRDGK   83 (110)
T ss_dssp             HTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGGCHH-HHHHTTCCSSCEEEEEESSS
T ss_pred             HHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcCCHH-HHHHcCCcccCEEEEEECCE
Confidence            45678888888888 9999999999999987643 67778887766544 555678889999987  775

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=96.46  E-value=0.0051  Score=53.27  Aligned_cols=62  Identities=13%  Similarity=0.098  Sum_probs=50.8

Q ss_pred             CCeEEEEEecC--------CCchHHHHHHHHHHHHhhCCCCEEEEEEecC------Cchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGD--------DVEWVRKFTTAARSVANTARIPLEMVYVGKS------TKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfga--------d~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d------~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .||.+.++|.+        -|++|+.+.|.+.+++++.+.++.++.|.-+      ++...+.+.+++-.+|++++
T Consensus        23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~~i~~~Pt~~~   98 (123)
T 1wou_A           23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLK   98 (123)
T ss_dssp             TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEEEE
T ss_pred             CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHCCCCeeCEEEE
Confidence            37888888855        4999999999999999886668999999885      44556777789999999875

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=95.45  E-value=0.00048  Score=59.64  Aligned_cols=65  Identities=11%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecCC-chhhhhhcccccccccccc
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~  566 (570)
                      ...+||.+.|||.+. |++|+.+.+.+   .++++..+.++.++.|..|+ ....+.+.+++-.+|++++
T Consensus        15 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~   84 (130)
T 2lst_A           15 AQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVF   84 (130)
Confidence            356899999999999 99999999998   78877666678888888764 3456778889999999877

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=96.41  E-value=0.0092  Score=53.31  Aligned_cols=64  Identities=9%  Similarity=0.142  Sum_probs=52.3

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCc------------------hhhhhhcccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTK------------------RDKCGESWQPLQLK  562 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~------------------~e~~~~~~~~~~~~  562 (570)
                      ...||.+.|||.+. |++|+...+.+.+++++. +..++++.|+.|..                  ...+.+.+++..+|
T Consensus        38 ~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  117 (158)
T 3hdc_A           38 QYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLP  117 (158)
T ss_dssp             GGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSS
T ss_pred             HhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcc
Confidence            45799999999777 999999999999999874 47899999999872                  44677777888888


Q ss_pred             c-ccc
Q 008311          563 S-LVT  566 (570)
Q Consensus       563 ~-~~~  566 (570)
                      + +++
T Consensus       118 ~~~li  122 (158)
T 3hdc_A          118 DTFIV  122 (158)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            8 444

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=96.39  E-value=0.0047  Score=52.60  Aligned_cols=62  Identities=6%  Similarity=-0.152  Sum_probs=51.3

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..+|.+.++|.++ |++|+.+.+.+.+++++.+.++.++.|..++..+ +.+.+++-.+|++++
T Consensus        19 ~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~   81 (122)
T 3aps_A           19 QGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQ-TCQKAGIKAYPSVKL   81 (122)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH-HHHHTTCCSSSEEEE
T ss_pred             cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHH-HHHHcCCCccceEEE
Confidence            4678899999888 9999999999999988765578999998887654 455578888999875

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=96.36  E-value=0.0021  Score=55.40  Aligned_cols=65  Identities=8%  Similarity=0.021  Sum_probs=51.9

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCC-CEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARI-PLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~-~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      .+||.+.++|.++ |++|+.+.+.+.+++++... ++.++.|..|+..+ +.+.+++-..|++++  +|+
T Consensus        31 ~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~-~~~~~~v~~~Pt~~~~~~G~   99 (121)
T 2j23_A           31 GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQ-IAQEVGIRAMPTFVFFKNGQ   99 (121)
T ss_dssp             SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHH-HHHHHTCCSSSEEEEEETTE
T ss_pred             cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHH-HHHHcCCCcccEEEEEECCe
Confidence            5788899999888 99999999999999876433 48899999887654 555667889999887  553

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=96.36  E-value=0.0068  Score=50.20  Aligned_cols=63  Identities=10%  Similarity=0.107  Sum_probs=50.7

Q ss_pred             CeEEEEEecCC-CchHHHHHHHHHHHHhhCC---CCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          506 GKYIFLYGGDD-VEWVRKFTTAARSVANTAR---IPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~---~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ++.+.++|.+. |++|+.+.+.+.+++++..   ..+.++.|..++..+ +.+.+++-.+|++++  +|+
T Consensus        21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~~g~   89 (111)
T 3uvt_A           21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERN-ICSKYSVRGYPTLLLFRGGK   89 (111)
T ss_dssp             SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHh-HHHhcCCCcccEEEEEeCCc
Confidence            77888888888 9999999999999987632   578888898886654 556678889999887  553

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.36  E-value=0.0039  Score=53.69  Aligned_cols=62  Identities=3%  Similarity=-0.012  Sum_probs=50.4

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCC----CCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTAR----IPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~----~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..++.+.++|.+. |++|+.+.+.+.+++++.+    ..+.++.|..++..+ +.+.+++-.+|++++
T Consensus        23 ~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~v~~~Pt~~~   89 (133)
T 1x5d_A           23 DSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQV-LASRYGIRGFPTIKI   89 (133)
T ss_dssp             TSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCH-HHHHHTCCSSSEEEE
T ss_pred             cCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHH-HHHhCCCCeeCeEEE
Confidence            4578999999888 9999999999999987643    679999998887654 445568888999876

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=96.32  E-value=0.0046  Score=54.11  Aligned_cols=64  Identities=14%  Similarity=0.137  Sum_probs=52.7

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..++.+.++|.+. |++|+.+.+.+.+++++.+ ++.++.|..|...+ +.+.+++-.+|++++  +|+
T Consensus        35 ~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~-l~~~~~v~~~Pt~~i~~~G~  101 (125)
T 1r26_A           35 SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSE-IVSKCRVLQLPTFIIARSGK  101 (125)
T ss_dssp             HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHH-HHHHcCCCcccEEEEEeCCe
Confidence            5788999999888 9999999999999988753 58888998887654 455578889999987  664

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=96.30  E-value=0.007  Score=50.72  Aligned_cols=23  Identities=9%  Similarity=0.289  Sum_probs=16.8

Q ss_pred             HHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          430 RYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       430 ~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                      ..+.+.+++.++|++++   +|+.+.
T Consensus        58 ~~l~~~~g~~~vP~i~~---~g~~i~   80 (105)
T 1kte_A           58 DYLQQLTGARTVPRVFI---GKECIG   80 (105)
T ss_dssp             HHHHHHHSCCCSCEEEE---TTEEEE
T ss_pred             HHHHHHhCCCCcCeEEE---CCEEEe
Confidence            34667789999999754   677764

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=96.29  E-value=0.012  Score=51.84  Aligned_cols=64  Identities=11%  Similarity=0.106  Sum_probs=50.4

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCc-hhh---------------------hhhcccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTK-RDK---------------------CGESWQP  558 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~-~e~---------------------~~~~~~~  558 (570)
                      ...||.+.|+|.+. |++|+...+.+.+++++. +..++++.|+.|.. .+.                     +.+.+++
T Consensus        25 ~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  104 (154)
T 3kcm_A           25 DLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGT  104 (154)
T ss_dssp             GGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTC
T ss_pred             hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCC
Confidence            45889999988777 999999999999999874 45899999999986 332                     5556677


Q ss_pred             cccc-cccc
Q 008311          559 LQLK-SLVT  566 (570)
Q Consensus       559 ~~~~-~~~~  566 (570)
                      ..+| ++++
T Consensus       105 ~~~P~~~li  113 (154)
T 3kcm_A          105 TGVPETFVI  113 (154)
T ss_dssp             CSBCEEEEE
T ss_pred             CCCCeEEEE
Confidence            7777 4454

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=96.28  E-value=0.0058  Score=53.07  Aligned_cols=48  Identities=8%  Similarity=0.080  Sum_probs=41.1

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC--CCCEEEEEEecCCchh
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA--RIPLEMVYVGKSTKRD  550 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~--~~~fEiv~Vs~d~~~e  550 (570)
                      ...||.+.|+|.+. |++|+...+.+.+++++.  +..++++.|+.|.+.+
T Consensus        30 ~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~   80 (148)
T 3fkf_A           30 RFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDRE   80 (148)
T ss_dssp             TTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHH
T ss_pred             ccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHH
Confidence            45899999999877 999999999999999874  4559999999987653

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=96.27  E-value=0.0071  Score=54.23  Aligned_cols=43  Identities=7%  Similarity=0.022  Sum_probs=38.8

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKS  546 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d  546 (570)
                      ...||.+.|+|.+. |++|+.+.+.+.+++++.+ .++++.|+.|
T Consensus        34 ~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d   77 (165)
T 3ha9_A           34 NVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFW   77 (165)
T ss_dssp             GCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECC
T ss_pred             HhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEec
Confidence            45899999988777 9999999999999998867 9999999998

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=96.27  E-value=0.0079  Score=52.98  Aligned_cols=63  Identities=16%  Similarity=0.060  Sum_probs=49.8

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCch---------------------hhhhhccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKR---------------------DKCGESWQPL  559 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~---------------------e~~~~~~~~~  559 (570)
                      ...||.+.|||.+. |++|+.+.+.+.+++++. +.+++++.|+.|.+.                     ..+.+.+++.
T Consensus        23 ~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  102 (151)
T 2f9s_A           23 DLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVS  102 (151)
T ss_dssp             GGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCC
T ss_pred             HcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCC
Confidence            45799999999877 999999999999998763 447999999998754                     3455566777


Q ss_pred             cccccc
Q 008311          560 QLKSLV  565 (570)
Q Consensus       560 ~~~~~~  565 (570)
                      .+|+++
T Consensus       103 ~~P~~~  108 (151)
T 2f9s_A          103 PLPTTF  108 (151)
T ss_dssp             SSCEEE
T ss_pred             CCCeEE
Confidence            778743

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=96.26  E-value=0.0027  Score=55.23  Aligned_cols=54  Identities=11%  Similarity=-0.023  Sum_probs=43.8

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhcc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESW  556 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~  556 (570)
                      ...||.+.|||.+. |++|+...+.+.+++++. +..++++.|+.|++.+.+++.+
T Consensus        28 ~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~   83 (148)
T 3hcz_A           28 DVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFI   83 (148)
T ss_dssp             GCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHH
T ss_pred             HcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHH
Confidence            45899999999877 999999999999998763 3469999999997776544433

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=96.25  E-value=0.0061  Score=52.40  Aligned_cols=60  Identities=7%  Similarity=0.065  Sum_probs=50.7

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .||.+.++|.+. |++|+.+.+.+.+++++. ..+.++.|..|+..+ +.+.+++-.+|++++
T Consensus        22 ~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~-~~~~~~i~~~Pt~~~   82 (118)
T 2f51_A           22 APGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNGN-AADAYGVSSIPALFF   82 (118)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHH-HHHHTTCCSSSEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCCCHH-HHHhcCCCCCCEEEE
Confidence            588899999888 999999999999998876 678899998887654 556678889999876

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.23  E-value=0.0073  Score=52.15  Aligned_cols=61  Identities=5%  Similarity=0.046  Sum_probs=49.2

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCC--CCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTAR--IPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~--~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+|.+.++|.+. |++|+.+.+.+.+++++..  ..+.++.|..++.. .+.+.+++..+|++++
T Consensus        24 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~   87 (133)
T 2dj3_A           24 PKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAND-ITNDQYKVEGFPTIYF   87 (133)
T ss_dssp             TTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSC-CCCSSCCCSSSSEEEE
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCH-HHHhhcCCCcCCEEEE
Confidence            589999999998 9999999999999987633  56888888776654 3445678889999875

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=96.23  E-value=0.0071  Score=53.45  Aligned_cols=55  Identities=5%  Similarity=0.044  Sum_probs=45.6

Q ss_pred             ccCCeEEEEEecCC-Cch--HHHHHHHHHHHHhh--CCCCEEEEEEecCCchhhhhhccc
Q 008311          503 IKEGKYIFLYGGDD-VEW--VRKFTTAARSVANT--ARIPLEMVYVGKSTKRDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w--~r~FT~~l~~vy~~--~~~~fEiv~Vs~d~~~e~~~~~~~  557 (570)
                      ...||.+.|+|.+. |++  |+...+.+.+++++  .+..++++.|+.|++.+.++++++
T Consensus        30 ~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~   89 (150)
T 3fw2_A           30 AFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIK   89 (150)
T ss_dssp             TTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHH
T ss_pred             hhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHH
Confidence            45799999999777 999  99999999999976  445699999999988765555444

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=96.20  E-value=0.0086  Score=54.13  Aligned_cols=62  Identities=11%  Similarity=0.016  Sum_probs=52.5

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .++|.+.++|.+. |++|+.+.|.+.+++++.+..+.++.|.-|... ++.+.+++..+|++++
T Consensus        21 ~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~-~l~~~~~v~~~Pt~~~   83 (149)
T 3gix_A           21 TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTA-VYTQYFDISYIPSTVF   83 (149)
T ss_dssp             CCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCC-HHHHHTTCCSSSEEEE
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCH-HHHHHcCCCccCeEEE
Confidence            3689999999999 999999999999999876666999999887654 4566678889999875

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=96.19  E-value=0.022  Score=45.26  Aligned_cols=16  Identities=13%  Similarity=0.059  Sum_probs=13.6

Q ss_pred             EEEEecCCCHHhHHHH
Q 008311          350 LLLISDLDISQEELSI  365 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~  365 (570)
                      ++.||++|||+|+...
T Consensus         3 v~~f~~~~C~~C~~~~   18 (81)
T 1h75_A            3 ITIYTRNDCVQCHATK   18 (81)
T ss_dssp             EEEEECTTCHHHHHHH
T ss_pred             EEEEcCCCChhHHHHH
Confidence            4569999999999865

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=96.18  E-value=0.0098  Score=52.24  Aligned_cols=63  Identities=13%  Similarity=0.020  Sum_probs=50.9

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      .++ +.++|.+. |++|+.|.+.+.+++++.+.++.++.|..|+..+ +.+.+++..+|++++  +|+
T Consensus        50 ~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~~G~  115 (140)
T 1v98_A           50 APL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPG-LAARYGVRSVPTLVLFRRGA  115 (140)
T ss_dssp             CCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             CCC-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHH-HHHHCCCCccCEEEEEeCCc
Confidence            345 77888777 9999999999999998766679999999887654 556678889999887  664

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=96.17  E-value=0.0028  Score=54.60  Aligned_cols=63  Identities=10%  Similarity=0.043  Sum_probs=50.7

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecCC-chhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+||.+.|+|.+. |++|+.+.+.+   .++.+..+..+.++-|..++ ....+.+.+++-.+|++++
T Consensus        25 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~   92 (130)
T 2kuc_A           25 VEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLF   92 (130)
T ss_dssp             HHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEE
T ss_pred             hcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEE
Confidence            4789999999888 99999999988   56655444567778887775 4567888889999999986

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=95.16  E-value=0.00084  Score=58.43  Aligned_cols=53  Identities=19%  Similarity=0.226  Sum_probs=43.5

Q ss_pred             cCCe-EEEEEecCC-CchHHHHHHHHHHHHhhC---CCCEEEEEEecCCchhhhhhcc
Q 008311          504 KEGK-YIFLYGGDD-VEWVRKFTTAARSVANTA---RIPLEMVYVGKSTKRDKCGESW  556 (570)
Q Consensus       504 ~egk-~I~lYfgad-~~w~r~FT~~l~~vy~~~---~~~fEiv~Vs~d~~~e~~~~~~  556 (570)
                      ..|| .+.|||.+. |++|+.+.+.+.+++++.   +.++++++|+.|++.+.+++++
T Consensus        23 ~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~   80 (143)
T 2lus_A           23 LKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYM   80 (143)
Confidence            5788 999999888 999999999999998763   4689999999997765444433

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=96.15  E-value=0.0063  Score=55.34  Aligned_cols=65  Identities=6%  Similarity=0.068  Sum_probs=53.7

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..|+.+.+||.+. |++|+.|.+.+.+++++....+.++.|..|+..+ +.+-+++-.+|++++  +|+
T Consensus        62 ~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~-l~~~~~i~~~Pt~~~~~~G~  129 (155)
T 2ppt_A           62 RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPA-VAGRHRIQGIPAFILFHKGR  129 (155)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTH-HHHHTTCCSSSEEEEEETTE
T ss_pred             hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHH-HHHHcCCCcCCEEEEEeCCe
Confidence            5688899999888 9999999999999998755569999998887654 555678889999887  564

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=96.14  E-value=0.0068  Score=54.51  Aligned_cols=62  Identities=5%  Similarity=0.046  Sum_probs=51.5

Q ss_pred             CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ||.+.++|.+. |++|+.+.+.+.+++++. .++.++.|..|+..+ +.+.+++..+|++++  +|+
T Consensus        32 ~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~~G~   96 (153)
T 2wz9_A           32 KSLLVVHFWAPWAPQCAQMNEVMAELAKEL-PQVSFVKLEAEGVPE-VSEKYEISSVPTFLFFKNSQ   96 (153)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSHH-HHHHTTCCSSSEEEEEETTE
T ss_pred             CCeEEEEEECCCCHhHHHHHHHHHHHHHHc-CCeEEEEEECCCCHH-HHHHcCCCCCCEEEEEECCE
Confidence            88899999888 999999999999998774 468888888877654 555678999999987  664

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=96.14  E-value=0.0068  Score=52.35  Aligned_cols=24  Identities=13%  Similarity=0.151  Sum_probs=17.8

Q ss_pred             HHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          429 IRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       429 ~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                      ...+.+.++++++|++++   +|+.+.
T Consensus        64 ~~~l~~~~g~~~vP~v~i---~g~~ig   87 (114)
T 2hze_A           64 RDYFEQITGGKTVPRIFF---GKTSIG   87 (114)
T ss_dssp             HHHHHHHHSCCSSCEEEE---TTEEEE
T ss_pred             HHHHHHHhCCCCcCEEEE---CCEEEe
Confidence            345777889999998754   587764

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=96.14  E-value=0.0059  Score=51.74  Aligned_cols=59  Identities=3%  Similarity=0.004  Sum_probs=47.3

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCC-----CEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARI-----PLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~-----~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..++.+.++|.+. |++|+.|.+.+.+++++.+.     .+.++.|..++..  +.+  ++-.+|++++
T Consensus        23 ~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~--~v~~~Pt~~~   87 (121)
T 2djj_A           23 DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND--VPD--EIQGFPTIKL   87 (121)
T ss_dssp             CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC--CSS--CCSSSSEEEE
T ss_pred             cCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc--ccc--ccCcCCeEEE
Confidence            4789999999888 99999999999999876433     7888888877654  444  7788888765

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=96.13  E-value=0.011  Score=50.45  Aligned_cols=60  Identities=5%  Similarity=-0.011  Sum_probs=49.0

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+|.+.++|.++ |+||+.+.|.+.++++..+ ++.++.|..|... ++.+.+++-++||+++
T Consensus        19 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d~~~-~l~~~~~V~~~PT~~~   79 (105)
T 3zzx_A           19 GNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-DVVFLKVDVDECE-DIAQDNQIACMPTFLF   79 (105)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TEEEEEEETTTCH-HHHHHTTCCBSSEEEE
T ss_pred             CCCEEEEEEECCCCCCccCCCcchhhhhhccC-CeEEEEEecccCH-HHHHHcCCCeecEEEE
Confidence            478999999999 9999999999999987643 5677777777654 4666778999999876

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.09  E-value=0.0069  Score=52.03  Aligned_cols=62  Identities=10%  Similarity=0.056  Sum_probs=48.5

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..+++ +.++|.+. |++|+.+.+.+.+++++. +.++.++.|.-|+..+ +.+.+++-.+|++++
T Consensus        20 ~~~~~-vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~-~~~~~~v~~~Pt~~~   83 (126)
T 1x5e_A           20 LLEGD-WMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPG-LSGRFIINALPTIYH   83 (126)
T ss_dssp             HTSSE-EEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHH-HHHHTTCCSSSEEEE
T ss_pred             HhCCC-EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHH-HHHHcCCcccCEEEE
Confidence            34555 67788777 999999999999998763 3478899998887654 455578889999876

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=96.06  E-value=0.0062  Score=53.26  Aligned_cols=61  Identities=10%  Similarity=0.126  Sum_probs=50.5

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..||.+.++|.++ |++|+.+.+.+.+++++. .++.++.|..|+.. .+.+.+++-.+|++++
T Consensus        44 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~v~~~~~~-~~~~~~~v~~~Pt~~~  105 (139)
T 3d22_A           44 RDGKIVLANFSARWCGPSRQIAPYYIELSENY-PSLMFLVIDVDELS-DFSASWEIKATPTFFF  105 (139)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSH-HHHHHTTCCEESEEEE
T ss_pred             hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEEEeCcccH-HHHHHcCCCcccEEEE
Confidence            4689999999888 999999999999998775 36888899888755 4556678889999876

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=96.06  E-value=0.0085  Score=57.97  Aligned_cols=63  Identities=5%  Similarity=-0.061  Sum_probs=53.2

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCC---CCEEEEEEecCC-chhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTAR---IPLEMVYVGKST-KRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~---~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..++.+.++|.+. |++|+.|.|.+.+++++.+   ..+.++.|..+. ...++.+.+++..+|++++
T Consensus        28 ~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt~~~   95 (244)
T 3q6o_A           28 GSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRF   95 (244)
T ss_dssp             SCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSEEEE
T ss_pred             hCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCEEEE
Confidence            3569999999999 9999999999999998744   489999999864 4567888889999999864

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=96.04  E-value=0.0035  Score=52.47  Aligned_cols=66  Identities=8%  Similarity=0.112  Sum_probs=51.8

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC---CCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA---RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~---~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..+||.+.++|.+. |++|+.|.+.+.+++++.   +.++.++.|..++.. .+.+.+++-..|++++  +|+
T Consensus        21 ~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~   92 (120)
T 1mek_A           21 LAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES-DLAQQYGVRGYPTIKFFRNGD   92 (120)
T ss_dssp             HHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC-SSHHHHTCCSSSEEEEEESSC
T ss_pred             HccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCH-HHHHHCCCCcccEEEEEeCCC
Confidence            35789999999888 999999999999998763   356777777776654 4555678889999987  665

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.99  E-value=0.0066  Score=52.21  Aligned_cols=62  Identities=6%  Similarity=0.045  Sum_probs=51.5

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..+|.+.++|.+. |++|+.+.+.+.+++++.+..+.++.|..|+..+ +.+.+++-.+|++++
T Consensus        33 ~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~v~~~Pt~~~   95 (130)
T 2dml_A           33 QSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQS-LGGQYGVQGFPTIKI   95 (130)
T ss_dssp             TCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHH-HHHHHTCCSSSEEEE
T ss_pred             cCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHH-HHHHcCCCccCEEEE
Confidence            4688899999888 9999999999999998766668888898887654 455578889999876

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=95.99  E-value=0.0098  Score=57.01  Aligned_cols=62  Identities=8%  Similarity=0.026  Sum_probs=52.8

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..+|.+.|+|.+. |++|+.+.+.+.+++++.+..+.++.|..|+..+ +.+.+++..+|++++
T Consensus        28 ~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~-l~~~~~v~~~Pt~~~   90 (222)
T 3dxb_A           28 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPTLLL   90 (222)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTT-TGGGGTCCSBSEEEE
T ss_pred             hcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHH-HHHHcCCCcCCEEEE
Confidence            4689999999888 9999999999999998876679999999887655 445578899999887

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=95.95  E-value=0.008  Score=55.04  Aligned_cols=54  Identities=9%  Similarity=-0.009  Sum_probs=43.9

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCE------EEEEEecCC-chhhhhhcc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPL------EMVYVGKST-KRDKCGESW  556 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~f------Eiv~Vs~d~-~~e~~~~~~  556 (570)
                      ...||.+.|+|.+. |++|+...+.+.+++++. +..+      +++.|+.|+ +.+.+++++
T Consensus        56 ~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~  118 (183)
T 3lwa_A           56 DFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFV  118 (183)
T ss_dssp             GGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHH
T ss_pred             HhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHH
Confidence            46899999999777 999999999999998752 2235      999999998 777777774

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=95.93  E-value=0.0064  Score=53.58  Aligned_cols=63  Identities=11%  Similarity=0.048  Sum_probs=48.3

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc----CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT----SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~----~~~  569 (570)
                      ..||.+.++|.+. |++|+.+.+.+.+++++.  .+.++.|..|... .+.+.+++..+|++++    +|+
T Consensus        38 ~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~~~g~  105 (133)
T 3cxg_A           38 TQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHP-KLNDQHNIKALPTFEFYFNLNNE  105 (133)
T ss_dssp             -CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTTCH-HHHHHTTCCSSSEEEEEEEETTE
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccchH-HHHHhcCCCCCCEEEEEEecCCC
Confidence            3578999999888 999999999998887654  4666666666544 4556678999999876    664

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=95.89  E-value=0.0091  Score=54.94  Aligned_cols=58  Identities=9%  Similarity=-0.059  Sum_probs=45.3

Q ss_pred             ccccccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccc
Q 008311          499 VLDWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPL  559 (570)
Q Consensus       499 i~~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~  559 (570)
                      +......||.+.|||.+. |++|+...+.+.+++++   .++++.|+-|++.+.+++.++..
T Consensus        51 ~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~~d~~~~~~~~~~~~  109 (176)
T 3kh7_A           51 LTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAIKWLNEL  109 (176)
T ss_dssp             EEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEESCCHHHHHHHHHHT
T ss_pred             ecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHc
Confidence            333456799999988777 99999999999999887   69999999776666665554443

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=95.89  E-value=0.0099  Score=51.99  Aligned_cols=68  Identities=7%  Similarity=0.184  Sum_probs=40.4

Q ss_pred             EEEEecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccccChHHH
Q 008311          350 LLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVI  429 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D~~~~  429 (570)
                      ++.|+++|||+|+.. |.++.+++.      ..++++..+.+ |.     +.+.                      .+..
T Consensus        27 Vvvf~~~~Cp~C~~a-lk~~L~~~~------~~~i~~~~vdi-d~-----~~~~----------------------~~~~   71 (118)
T 3c1r_A           27 IFVASKTYCPYCHAA-LNTLFEKLK------VPRSKVLVLQL-ND-----MKEG----------------------ADIQ   71 (118)
T ss_dssp             EEEEECSSCHHHHHH-HHHHHTTSC------CCGGGEEEEEG-GG-----STTH----------------------HHHH
T ss_pred             EEEEEcCCCcCHHHH-HHHHHHHcC------CCCCCeEEEEC-cc-----CCCh----------------------HHHH
Confidence            344999999999986 344443332      12356666776 11     1110                      1123


Q ss_pred             HHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          430 RYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       430 ~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                      ..+++.+++.++|++++   +|+.+.
T Consensus        72 ~~l~~~~g~~tvP~vfi---~g~~ig   94 (118)
T 3c1r_A           72 AALYEINGQRTVPNIYI---NGKHIG   94 (118)
T ss_dssp             HHHHHHHSCCSSCEEEE---TTEEEE
T ss_pred             HHHHHHhCCCCcCEEEE---CCEEEE
Confidence            45777789999998754   677663

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=95.88  E-value=0.013  Score=51.87  Aligned_cols=44  Identities=11%  Similarity=-0.065  Sum_probs=38.0

Q ss_pred             ccCCeEEEEEecCC-CchHHHH-HHHHHHHHhhCC-CCEEEEEEecC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKF-TTAARSVANTAR-IPLEMVYVGKS  546 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~F-T~~l~~vy~~~~-~~fEiv~Vs~d  546 (570)
                      ...||.+.|+|.+. |++|+.. .+.+.+++++.+ ..++++.|+.|
T Consensus        25 ~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~   71 (158)
T 3eyt_A           25 DLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTV   71 (158)
T ss_dssp             GGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECC
T ss_pred             HhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEec
Confidence            45799999999877 9999997 999999998744 67999999964

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=95.86  E-value=0.005  Score=60.72  Aligned_cols=61  Identities=7%  Similarity=0.039  Sum_probs=52.6

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .||.+.++|.+. |+||+.+.|.+.+++++.+.++.++.|..|... .+.+.+++.++||+++
T Consensus        25 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~   86 (287)
T 3qou_A           25 MTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQ-MIAAQFGLRAIPTVYL   86 (287)
T ss_dssp             TTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCH-HHHHTTTCCSSSEEEE
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCH-HHHHHcCCCCCCeEEE
Confidence            489999999999 999999999999999876667999999888654 5667788999999876

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=95.86  E-value=0.021  Score=52.07  Aligned_cols=23  Identities=13%  Similarity=0.208  Sum_probs=17.5

Q ss_pred             HHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          430 RYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       430 ~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                      ..+.+.+++.++|++++   +|+.+.
T Consensus        92 ~~L~~~~g~~tvP~ifi---~G~~ig  114 (146)
T 2ht9_A           92 DALYKMTGERTVPRIFV---NGTFIG  114 (146)
T ss_dssp             HHHHHHHSCCCSCEEEE---TTEEEE
T ss_pred             HHHHHHhCCCCcCeEEE---CCEEEe
Confidence            45777889999999864   677764

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=95.85  E-value=0.014  Score=54.85  Aligned_cols=60  Identities=12%  Similarity=0.062  Sum_probs=52.9

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLV  565 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~  565 (570)
                      +++.|.+-|+|+ |+|||...|.+.+++++.+..+.++.|.-|... .+.+.+++.++|||+
T Consensus        40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~-e~a~~y~V~siPT~~  100 (160)
T 2av4_A           40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVP-DFNTMYELYDPVSVM  100 (160)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCC-TTTTTTTCCSSEEEE
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCH-HHHHHcCCCCCCEEE
Confidence            578899999999 999999999999999887777889999888654 578889999999995

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=95.82  E-value=0.013  Score=51.97  Aligned_cols=45  Identities=11%  Similarity=0.012  Sum_probs=38.2

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecC
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKS  546 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d  546 (570)
                      ....||.+.|+|.+. |++|+.+.+.+.+++++ .+..++++.|+.|
T Consensus        34 ~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~   80 (164)
T 2h30_A           34 YLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASP   80 (164)
T ss_dssp             GCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECT
T ss_pred             HHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcC
Confidence            346899999999888 99999999999999876 3456999999864

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=95.76  E-value=0.0069  Score=54.46  Aligned_cols=46  Identities=15%  Similarity=0.124  Sum_probs=37.9

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhh
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKC  552 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~  552 (570)
                      ..||.+.|+|.+. |++|+.+.+.+.+++++   .++++.|+.|++.+.+
T Consensus        49 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~   95 (168)
T 2b1k_A           49 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKA   95 (168)
T ss_dssp             CCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHH
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHH
Confidence            5899988988777 99999999999999876   6889999866554433

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=95.75  E-value=0.017  Score=52.94  Aligned_cols=94  Identities=20%  Similarity=0.206  Sum_probs=51.9

Q ss_pred             ccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEE--ecccCCCC--------CC-hhhHHHHHHH
Q 008311          343 VLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWI--PIVDHFIH--------WD-DPTQKKFETL  409 (570)
Q Consensus       343 ~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~I--sIvD~s~~--------w~-D~~~~~F~~~  409 (570)
                      .-.||++++.|+..+||.|+.+.  |.+    +        .++.|+++  |+......        |. ....+.|+.+
T Consensus        11 ~~~a~~~vv~f~D~~Cp~C~~~~~~l~~----l--------~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~   78 (147)
T 3gv1_A           11 RGNGKLKVAVFSDPDCPFCKRLEHEFEK----M--------TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDW   78 (147)
T ss_dssp             ETTCCEEEEEEECTTCHHHHHHHHHHTT----C--------CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHH
T ss_pred             cCCCCEEEEEEECCCChhHHHHHHHHhh----c--------CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHH
Confidence            34679999999999999999976  432    2        13556655  54110000        00 0112233332


Q ss_pred             H--cCCCceeecccccc-ChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          410 Q--SSMPWYTVYHPTLI-DRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       410 ~--~~MPW~aV~fP~l~-D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                      .  ...|-   ..+... .......+.+.+||++.|++++  .+|++
T Consensus        79 ~~~g~~~~---~~~~~~~~v~~~~~la~~~gI~gtPt~vi--~nG~~  120 (147)
T 3gv1_A           79 MRKGKFPV---GGSICDNPVAETTSLGEQFGFNGTPTLVF--PNGRT  120 (147)
T ss_dssp             HHHCCCCT---TCCCCSCSHHHHHHHHHHTTCCSSCEEEC--TTSCE
T ss_pred             HhCCCCCC---ccHHHHHHHHHHHHHHHHhCCCccCEEEE--ECCEE
Confidence            2  12220   011110 1123457889999999999998  57764

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=95.74  E-value=0.0039  Score=53.47  Aligned_cols=64  Identities=11%  Similarity=0.098  Sum_probs=51.5

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      .+||.+.+||.+. |++|+.+.+.+.+++++.+ ++.++.|..|+.. ++.+.+++...|++++  +|+
T Consensus        34 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~  100 (130)
T 1wmj_A           34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDELK-EVAEKYNVEAMPTFLFIKDGA  100 (130)
T ss_dssp             TTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTTSG-GGHHHHTCCSSCCCCBCTTTT
T ss_pred             hcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccchH-HHHHHcCCCccceEEEEeCCe
Confidence            3688999999888 9999999999999987754 6778888777654 4556678889999988  554

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=95.74  E-value=0.014  Score=55.16  Aligned_cols=65  Identities=17%  Similarity=0.055  Sum_probs=54.2

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..|+.+.++|.+. |++|+.+.|.+.+++++.+..+.++.|..|...+ +.+-+++-.+|++++  +|+
T Consensus       112 ~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~~G~  179 (210)
T 3apq_A          112 NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRM-LCRMKGVNSYPSLFIFRSGM  179 (210)
T ss_dssp             HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHH-HHHHTTCCSSSEEEEECTTS
T ss_pred             ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHH-HHHHcCCCcCCeEEEEECCC
Confidence            5788999999888 9999999999999998766679999998887654 555678899999886  554

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=95.73  E-value=0.0084  Score=52.60  Aligned_cols=61  Identities=13%  Similarity=0.092  Sum_probs=48.6

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecCCc---hhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKSTK---RDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d~~---~e~~~~~~~~~~~~~~~~  566 (570)
                      .||.+.|+|.+. |++|+.+.+.+   .+++++.+ ++.++.|.-+..   ...+.+.+++..+|++++
T Consensus        30 ~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~~~   97 (134)
T 2fwh_A           30 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPTILF   97 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEE
T ss_pred             cCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHHHHHcCCCCCCEEEE
Confidence            488999999888 99999999888   78876644 488888888643   346777788899999875

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=95.73  E-value=0.017  Score=52.80  Aligned_cols=55  Identities=16%  Similarity=0.039  Sum_probs=43.7

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCc-hhhhhhccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTK-RDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~-~e~~~~~~~  557 (570)
                      ...||.+.|+|.+. |++|+...+.+.+++++. +..++++.|+.|.+ .+.+++.++
T Consensus        57 ~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~  114 (186)
T 1jfu_A           57 DFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLK  114 (186)
T ss_dssp             GGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHH
T ss_pred             HcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHH
Confidence            35799999999777 999999999999999874 47899999999875 344444433

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=94.71  E-value=0.0017  Score=53.04  Aligned_cols=65  Identities=12%  Similarity=0.098  Sum_probs=51.7

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--CCC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--SGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--~~~  569 (570)
                      ..+|.+.++|.+. |++|+.+.+.+.+++++.+.++.++.|..|+.. .+.+.++.-..|++++  +|+
T Consensus        17 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~   84 (106)
T 2yj7_A           17 KSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENP-NTAAQYGIRSIPTLLLFKNGQ   84 (106)
Confidence            4678888888888 999999999999998776557888888877654 4556678888999887  664

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.72  E-value=0.018  Score=50.53  Aligned_cols=64  Identities=11%  Similarity=-0.001  Sum_probs=47.8

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCC----------------------chhhhhhcccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKST----------------------KRDKCGESWQP  558 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~----------------------~~e~~~~~~~~  558 (570)
                      ...||.+.|+|.+. |++|+...+.+.+++++. +..++++.|+.|.                      +...+.+.+++
T Consensus        25 ~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  104 (153)
T 2l5o_A           25 DLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGT  104 (153)
T ss_dssp             HHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTC
T ss_pred             HhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCC
Confidence            35789988888777 999999999999998763 4569999998542                      23345566667


Q ss_pred             cccccccc
Q 008311          559 LQLKSLVT  566 (570)
Q Consensus       559 ~~~~~~~~  566 (570)
                      -.+|++++
T Consensus       105 ~~~P~~~l  112 (153)
T 2l5o_A          105 QVYPTSVL  112 (153)
T ss_dssp             CSSSEEEE
T ss_pred             CccCeEEE
Confidence            77777654

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=95.70  E-value=0.021  Score=56.51  Aligned_cols=68  Identities=13%  Similarity=0.163  Sum_probs=45.0

Q ss_pred             CCCEEEEEEec--CCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCCh--hhHHHHHHHHcCCCceeecc
Q 008311          345 RRKNVLLLISD--LDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDD--PTQKKFETLQSSMPWYTVYH  420 (570)
Q Consensus       345 kGKvVlL~FwA--sWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D--~~~~~F~~~~~~MPW~aV~f  420 (570)
                      .+++|+|+|||  +||+  ....+.++.++++.     ..++.|+-|.+ |      +  .+                  
T Consensus        21 ~~~~vlV~FyA~~pWCg--l~P~~e~lA~~~~~-----~~~v~~akVDv-d------~~g~~------------------   68 (240)
T 2qc7_A           21 KSKFVLVKFDTQYPYGE--KQDEFKRLAENSAS-----SDDLLVAEVGI-S------DYGDK------------------   68 (240)
T ss_dssp             GCSEEEEEECCSSCCSH--HHHHHHHHHHHHTT-----CTTEEEEEECC-C------CSSSC------------------
T ss_pred             CCCCEEEEEeCCCCCCc--chHHHHHHHHHhcC-----CCCeEEEEEeC-C------cccch------------------
Confidence            46899999999  9998  22226666666642     23566666654 1      1  00                  


Q ss_pred             ccccChHHHHHHHHhCCCC--CCceEEEECCCCc
Q 008311          421 PTLIDRAVIRYVKDVWHFK--NKPILVVLDPQGR  452 (570)
Q Consensus       421 P~l~D~~~~~~L~~~y~V~--~IPtlVVLDpqGk  452 (570)
                          .   ...+.+.|+|+  ++||++++ ++|+
T Consensus        69 ----~---~~~l~~~~~V~~~~~PTl~~f-~~G~   94 (240)
T 2qc7_A           69 ----L---NMELSEKYKLDKESYPVFYLF-RDGD   94 (240)
T ss_dssp             ----C---SHHHHHHTTCCGGGCSEEEEE-ETTC
T ss_pred             ----h---hHHHHHHcCCCCCCCCEEEEE-eCCC
Confidence                0   12367889999  99999999 4565

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=95.70  E-value=0.018  Score=52.89  Aligned_cols=57  Identities=4%  Similarity=-0.043  Sum_probs=46.6

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCC-------chhhhhhcccc
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKST-------KRDKCGESWQP  558 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~-------~~e~~~~~~~~  558 (570)
                      ....||.+.|+|.+. |++|+.-.+.+.+++++ .+..++++.|+.|.       +.+.+++.++.
T Consensus        34 ~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~   99 (180)
T 3kij_A           34 EKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARK   99 (180)
T ss_dssp             GGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHH
T ss_pred             HHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHH
Confidence            346899999999888 99999999999999987 45569999999764       66667666554

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=95.69  E-value=0.0088  Score=52.63  Aligned_cols=49  Identities=8%  Similarity=-0.002  Sum_probs=39.7

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhh
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCG  553 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~  553 (570)
                      ...||.+.|+|.+. |++|+.+.+.+.+++++  .+++++.|+.|++.+.++
T Consensus        39 ~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~   88 (156)
T 1kng_A           39 AFKGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNAR   88 (156)
T ss_dssp             GGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHH
T ss_pred             HhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHH
Confidence            45688888888777 99999999999999876  569999999776554443

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=95.60  E-value=0.0068  Score=55.20  Aligned_cols=61  Identities=13%  Similarity=0.007  Sum_probs=46.8

Q ss_pred             ccCCeEEEEEecCC-CchHHHH------HHHHHHHHhhCCCCEEEEEEecCCchhh-----h------------------
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKF------TTAARSVANTARIPLEMVYVGKSTKRDK-----C------------------  552 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~F------T~~l~~vy~~~~~~fEiv~Vs~d~~~e~-----~------------------  552 (570)
                      ..+||.|.|+|.+. |+|||.+      .+.+.+.+++   +|.++.|.-|+..+.     +                  
T Consensus        44 ~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~---~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (172)
T 3f9u_A           44 RQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN---DYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSY  120 (172)
T ss_dssp             HHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH---HCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHH
T ss_pred             HHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC---CEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhH
Confidence            36899999999999 9999998      5666666654   788999988765532     1                  


Q ss_pred             --hhcccccccccccc
Q 008311          553 --GESWQPLQLKSLVT  566 (570)
Q Consensus       553 --~~~~~~~~~~~~~~  566 (570)
                        .+.+++..+|++++
T Consensus       121 ~~~~~~~v~~~Pt~~l  136 (172)
T 3f9u_A          121 LQRVKFGANAQPFYVL  136 (172)
T ss_dssp             HHHHHHSCCCSSEEEE
T ss_pred             HHHHHcCCCCcceEEE
Confidence              45677889999764

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=95.55  E-value=0.035  Score=55.32  Aligned_cols=70  Identities=9%  Similarity=0.108  Sum_probs=44.8

Q ss_pred             CCCEEEEEEe--cCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLIS--DLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~Fw--AsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+++|+|.||  |+||+  ..-.+.++-++++.    ...++.|.-|.+ |      +                   |+ 
T Consensus        32 ~~~~vlV~Fy~~ApWCg--l~P~~e~lA~~~~~----~~~~v~~akVD~-d------~-------------------~g-   78 (248)
T 2c0g_A           32 RFPYSVVKFDIASPYGE--KHEAFTAFSKSAHK----ATKDLLIATVGV-K------D-------------------YG-   78 (248)
T ss_dssp             TSSEEEEEEEESSCCSH--HHHHHHHHHHHHHH----HCSSEEEEEEEE-C------S-------------------ST-
T ss_pred             cCCCEEEEEECCCCCCc--cHHHHHHHHHHHhc----cCCCeEEEEEEC-C------c-------------------cc-
Confidence            4689999999  99998  22226666665541    023566666664 1      1                   00 


Q ss_pred             ccChHHHHHHHHhCCCC--CCceEEEECCCCc
Q 008311          423 LIDRAVIRYVKDVWHFK--NKPILVVLDPQGR  452 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~--~IPtlVVLDpqGk  452 (570)
                        + +....+.+.|+|+  ++||++++.  |+
T Consensus        79 --~-~~n~~la~~~~V~~~~~PTl~~F~--G~  105 (248)
T 2c0g_A           79 --E-LENKALGDRYKVDDKNFPSIFLFK--GN  105 (248)
T ss_dssp             --T-CTTHHHHHHTTCCTTSCCEEEEES--SS
T ss_pred             --c-cccHHHHHHhCCCcCCCCeEEEEe--CC
Confidence              0 0012477889999  999999996  87

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.55  E-value=0.027  Score=49.92  Aligned_cols=23  Identities=13%  Similarity=0.208  Sum_probs=17.4

Q ss_pred             HHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          430 RYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       430 ~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                      ..+.+.+++.++|++++   +|+.+.
T Consensus        70 ~~l~~~~g~~~vP~l~i---~G~~ig   92 (130)
T 2cq9_A           70 DALYKMTGERTVPRIFV---NGTFIG   92 (130)
T ss_dssp             HHHHHHHSSCCSSEEEE---TTEEEE
T ss_pred             HHHHHHhCCCCcCEEEE---CCEEEc
Confidence            34677789999999864   677764

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=95.54  E-value=0.016  Score=53.89  Aligned_cols=55  Identities=9%  Similarity=0.110  Sum_probs=46.2

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecC-------Cchhhhhhccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKS-------TKRDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d-------~~~e~~~~~~~  557 (570)
                      ...||.+.|+|.+. |++|+...+.+.++|++ .+..++++.|+.|       ++.+.++++++
T Consensus        43 ~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~  106 (187)
T 3dwv_A           43 QHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVC  106 (187)
T ss_dssp             GGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCC
T ss_pred             HhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHH
Confidence            46899999999888 99999999999999976 3446999999987       46677777666

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=95.53  E-value=0.0066  Score=62.08  Aligned_cols=34  Identities=6%  Similarity=0.013  Sum_probs=22.5

Q ss_pred             eeeccccCCCEEEEEEecCCCHHhHHHHHHHHHHHH
Q 008311          338 RVNIEVLRRKNVLLLISDLDISQEELSILEQIYNES  373 (570)
Q Consensus       338 ~Vsls~LkGKvVlL~FwAsWCpPCr~e~L~~iY~el  373 (570)
                      ...+...-++..++.|||+|||||++.  ..+++++
T Consensus       189 ~~~la~~l~~~~vV~F~A~WC~~Ck~l--~p~le~l  222 (291)
T 3kp9_A          189 AVGLAAHLRQIGGTMYGAYWCPHCQDQ--KELFGAA  222 (291)
T ss_dssp             HHHHHHHHHHTTCEEEECTTCHHHHHH--HHHHGGG
T ss_pred             HHHHHHHhCCCCEEEEECCCCHHHHHH--HHHHHHH
Confidence            344444334445688999999999985  4455554

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=95.49  E-value=0.017  Score=51.11  Aligned_cols=43  Identities=7%  Similarity=-0.018  Sum_probs=37.1

Q ss_pred             ccCCeEEEEEecCC-CchHHHH-HHHHHHHHhhC-CCCEEEEEEec
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKF-TTAARSVANTA-RIPLEMVYVGK  545 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~F-T~~l~~vy~~~-~~~fEiv~Vs~  545 (570)
                      ...||.+.|+|.+. |++|+.. .+.+.+++++. +..++++.|+.
T Consensus        27 ~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~   72 (160)
T 3lor_A           27 DLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHS   72 (160)
T ss_dssp             HHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEEC
T ss_pred             HhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEec
Confidence            45799999999888 9999995 99999999874 35699999996

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=95.49  E-value=0.014  Score=51.83  Aligned_cols=55  Identities=9%  Similarity=0.105  Sum_probs=42.6

Q ss_pred             ccCCeEEEEEecCC-Cch-HHHHHHHHHHHHhhCC-----CCEEEEEEecCCc---hhhhhhccc
Q 008311          503 IKEGKYIFLYGGDD-VEW-VRKFTTAARSVANTAR-----IPLEMVYVGKSTK---RDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w-~r~FT~~l~~vy~~~~-----~~fEiv~Vs~d~~---~e~~~~~~~  557 (570)
                      ...||.+.|||.+. |++ |+...+.+.+++++.+     ..+++++|+.|..   .+.++++.+
T Consensus        20 ~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~   84 (164)
T 2ggt_A           20 DYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVK   84 (164)
T ss_dssp             GGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHH
T ss_pred             HcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHH
Confidence            45799999999887 999 9999999999987522     4899999998753   334444443

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=95.47  E-value=0.0064  Score=52.94  Aligned_cols=65  Identities=9%  Similarity=0.063  Sum_probs=49.3

Q ss_pred             cCCeEEEEEecCC-Cc--------------hHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc--
Q 008311          504 KEGKYIFLYGGDD-VE--------------WVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT--  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~--------------w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~--  566 (570)
                      .+||.+.++|.++ |+              +|+.+.|.+.+++++.+.++.++.|.-|+.. ++.+.+++-.+|++++  
T Consensus        19 ~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~   97 (123)
T 1oaz_A           19 KADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-GTAPKYGIRGIPTLLLFK   97 (123)
T ss_dssp             SCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCT-TTGGGGTCCBSSEEEEEE
T ss_pred             hCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCH-HHHHHcCCCccCEEEEEE
Confidence            5789999999998 99              9999999999988765556888999888765 4556678899999987  


Q ss_pred             CCC
Q 008311          567 SGK  569 (570)
Q Consensus       567 ~~~  569 (570)
                      +|+
T Consensus        98 ~G~  100 (123)
T 1oaz_A           98 NGE  100 (123)
T ss_dssp             SSS
T ss_pred             CCE
Confidence            665

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=95.44  E-value=0.0021  Score=59.08  Aligned_cols=64  Identities=8%  Similarity=0.122  Sum_probs=45.8

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccc--cccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQP--LQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~--~~~~~~~~  566 (570)
                      ..+||.+.|+|.+. |+||+.+.|.+.++++..+.++.++.|.-|...+...+.++.  ..+|++++
T Consensus        43 ~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~  109 (164)
T 1sen_A           43 AASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILF  109 (164)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEE
T ss_pred             HhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEE
Confidence            45789999999999 999999999998876443334556667666655534444454  56888764

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=94.41  E-value=0.0026  Score=56.82  Aligned_cols=55  Identities=11%  Similarity=0.016  Sum_probs=45.8

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHH-HHhhC--CCCEEEEEEecCCchhhhhhccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARS-VANTA--RIPLEMVYVGKSTKRDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~-vy~~~--~~~fEiv~Vs~d~~~e~~~~~~~  557 (570)
                      ...||.+.|+|.+. |++|+...+.+.+ ++++.  +.+++++.|+.|++.+.+++..+
T Consensus        30 ~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~   88 (159)
T 2ls5_A           30 SLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAK   88 (159)
Confidence            35789999999888 9999999999998 87653  57899999999988777776664

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=95.32  E-value=0.026  Score=50.42  Aligned_cols=55  Identities=11%  Similarity=0.059  Sum_probs=43.5

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecC-------Cchhhhhhccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKS-------TKRDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d-------~~~e~~~~~~~  557 (570)
                      ...||.+.|+|.+. |++|+...+.+.+++++ .+..++++.|+.|       ++.+.++++++
T Consensus        29 ~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~   92 (170)
T 2p5q_A           29 IFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVC   92 (170)
T ss_dssp             GGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHH
T ss_pred             HhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHH
Confidence            45899999999888 99999999999999976 3446999999986       34555554443

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.31  E-value=0.033  Score=49.13  Aligned_cols=57  Identities=9%  Similarity=-0.010  Sum_probs=46.0

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .||.+.+||.+. |++|+.+.|.+.+++++. .++.++.|..++..    +.+++-.+|++++
T Consensus        29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~~~~~----~~~~i~~~Pt~~~   86 (135)
T 2dbc_A           29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFVKAIVNSCI----EHYHDNCLPTIFV   86 (135)
T ss_dssp             SSCEEEEEECCTTCHHHHHHHHHHHHHHHHC-SSEEEEEECCSSSC----SSCCSSCCSEEEE
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHC-CCcEEEEEEhhcCc----ccCCCCCCCEEEE
Confidence            568999999999 999999999999998774 35667777666543    5678888999765

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=95.30  E-value=0.077  Score=42.46  Aligned_cols=33  Identities=9%  Similarity=0.047  Sum_probs=22.1

Q ss_pred             EEEEecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          350 LLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      +..|+++|||+|+.-.  .+-++.       +-+|+++.|.+
T Consensus         6 v~ly~~~~Cp~C~~~~--~~L~~~-------~i~~~~~~vd~   38 (89)
T 3msz_A            6 VKIYTRNGCPYCVWAK--QWFEEN-------NIAFDETIIDD   38 (89)
T ss_dssp             EEEEECTTCHHHHHHH--HHHHHT-------TCCCEEEECCS
T ss_pred             EEEEEcCCChhHHHHH--HHHHHc-------CCCceEEEeec
Confidence            5669999999999865  222333       34677777653

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=95.26  E-value=0.022  Score=50.99  Aligned_cols=45  Identities=13%  Similarity=0.144  Sum_probs=38.6

Q ss_pred             ccCCeEEEEEecCC-Cch-HHHHHHHHHHHHhhC-----CCCEEEEEEecCC
Q 008311          503 IKEGKYIFLYGGDD-VEW-VRKFTTAARSVANTA-----RIPLEMVYVGKST  547 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w-~r~FT~~l~~vy~~~-----~~~fEiv~Vs~d~  547 (570)
                      ...||.+.|||.+. |++ |+...+.+.+++++.     +..+++++|+.|.
T Consensus        23 ~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~   74 (171)
T 2rli_A           23 DFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDP   74 (171)
T ss_dssp             TTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCS
T ss_pred             HhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECC
Confidence            45799999999877 999 999999999998753     3689999999883

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=95.23  E-value=0.027  Score=51.90  Aligned_cols=55  Identities=4%  Similarity=-0.003  Sum_probs=44.0

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCC-------chhhhhhccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKST-------KRDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~-------~~e~~~~~~~  557 (570)
                      ...||.+.|+|.+. |++|+...+.+.++|++ .+..++++.|+.|+       +.+.+++.++
T Consensus        46 ~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~  109 (181)
T 2p31_A           46 KYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFAR  109 (181)
T ss_dssp             GGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHH
T ss_pred             HcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHH
Confidence            46899999999887 99999999999999976 34469999999874       4556655443

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=95.23  E-value=0.062  Score=41.57  Aligned_cols=16  Identities=13%  Similarity=0.000  Sum_probs=13.6

Q ss_pred             EEEEecCCCHHhHHHH
Q 008311          350 LLLISDLDISQEELSI  365 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~  365 (570)
                      +..|+++|||+|+...
T Consensus         3 i~~y~~~~C~~C~~~~   18 (75)
T 1r7h_A            3 ITLYTKPACVQCTATK   18 (75)
T ss_dssp             EEEEECTTCHHHHHHH
T ss_pred             EEEEeCCCChHHHHHH
Confidence            4569999999999866

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.21  E-value=0.014  Score=51.18  Aligned_cols=61  Identities=11%  Similarity=0.024  Sum_probs=48.9

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCC-CCEEEEEEecCCchhhhhhccccc------ccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTAR-IPLEMVYVGKSTKRDKCGESWQPL------QLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~-~~fEiv~Vs~d~~~e~~~~~~~~~------~~~~~~~  566 (570)
                      +++.+.++|.+. |++|+.+.|.+.+++++.+ .++.++.|..|+..+ +.+.+++.      .+|++++
T Consensus        25 ~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~-~~~~~~v~~~~~~~~~Pt~~~   93 (137)
T 2dj0_A           25 KRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTD-VSTRYKVSTSPLTKQLPTLIL   93 (137)
T ss_dssp             TTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHH-HHHHTTCCCCSSSSCSSEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHH-HHHHccCcccCCcCCCCEEEE
Confidence            456888999888 9999999999999997744 579999998887655 44456666      8899875

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=95.21  E-value=0.021  Score=52.22  Aligned_cols=63  Identities=14%  Similarity=0.054  Sum_probs=53.3

Q ss_pred             ccCCe-EEEEEecCC-C--chHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGK-YIFLYGGDD-V--EWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk-~I~lYfgad-~--~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +..++ .+.++|.++ |  +|||...|.+.+++++.+..+.++-|.-|.. .++-.-+++..||||++
T Consensus        29 v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~-~~la~~ygV~siPTlil   95 (137)
T 2qsi_A           29 IAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAE-RGLMARFGVAVCPSLAV   95 (137)
T ss_dssp             HHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGH-HHHHHHHTCCSSSEEEE
T ss_pred             HhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCC-HHHHHHcCCccCCEEEE
Confidence            33444 899999998 9  9999999999999998878899999987654 56677789999999975

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=95.20  E-value=0.021  Score=53.00  Aligned_cols=45  Identities=9%  Similarity=0.130  Sum_probs=38.8

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKST  547 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~  547 (570)
                      ...||.+.|+|.+. |++|+...+.+.+++++ .+..++++.|+.|+
T Consensus        45 ~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~   91 (190)
T 2vup_A           45 QHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQ   91 (190)
T ss_dssp             GGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCC
T ss_pred             HcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCc
Confidence            45899999999888 99999999999999976 34469999999873

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=95.16  E-value=0.042  Score=47.27  Aligned_cols=61  Identities=5%  Similarity=-0.073  Sum_probs=50.0

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhh-----CCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANT-----ARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~-----~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .++.+.++|.+. |++|+.+.|.+.+++++     .+..+.++.|..|... ++.+-+++-..||+++
T Consensus        32 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~   98 (127)
T 3h79_A           32 PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYP-DVIERMRVSGFPTMRY   98 (127)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCH-HHHHHTTCCSSSEEEE
T ss_pred             CCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccH-hHHHhcCCccCCEEEE
Confidence            589999999988 99999999999999753     3467899999888654 4556678889999865

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=95.12  E-value=0.029  Score=50.94  Aligned_cols=43  Identities=5%  Similarity=0.026  Sum_probs=36.9

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKS  546 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d  546 (570)
                      ...||.+.|+|.+. |++|+ ..+.+.+++++ .+..++++.|+.|
T Consensus        29 ~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d   73 (171)
T 3cmi_A           29 QLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCN   73 (171)
T ss_dssp             GGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred             HcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECc
Confidence            46899999999888 99999 99999999976 3446999999875

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=95.10  E-value=0.035  Score=50.97  Aligned_cols=55  Identities=9%  Similarity=-0.074  Sum_probs=43.4

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCC-------chhhhhhccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKST-------KRDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~-------~~e~~~~~~~  557 (570)
                      ...||.+.|+|.+. |++|+...+.+.+++++ .+..++++.|+.|.       +.+.++++++
T Consensus        44 ~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~  107 (183)
T 2obi_A           44 KYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAA  107 (183)
T ss_dssp             GGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHH
T ss_pred             HcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHH
Confidence            46899999999877 99999999999999976 34569999999763       4455555443

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=95.08  E-value=0.054  Score=48.11  Aligned_cols=45  Identities=7%  Similarity=-0.169  Sum_probs=37.6

Q ss_pred             ccCCe-EEEEEec-CC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCC
Q 008311          503 IKEGK-YIFLYGG-DD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKST  547 (570)
Q Consensus       503 ~~egk-~I~lYfg-ad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~  547 (570)
                      ...|| .+.|+|- +. |++|+...+.+.+++++. +..++++.|+.|.
T Consensus        32 ~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~   80 (160)
T 1xvw_A           32 GYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGP   80 (160)
T ss_dssp             GGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCC
T ss_pred             HhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCC
Confidence            45787 8888883 66 999999999999999874 4579999999985

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=95.03  E-value=0.0056  Score=52.58  Aligned_cols=60  Identities=5%  Similarity=-0.087  Sum_probs=44.2

Q ss_pred             CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCC---chhhhhhccccccccccccCCC
Q 008311          506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKST---KRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~---~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      ||.+.++|.+. |++|+.+.|.+.+++++.+    .|-+..|.   ...++.+.+++.++||++++|+
T Consensus        12 ~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~----~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i~G~   75 (106)
T 3kp8_A           12 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVP----YVECSPNGPGTPQAQECTEAGITSYPTWIINGR   75 (106)
T ss_dssp             HHHTCEEEECTTCHHHHHHHHHHGGGGGGSC----EEESCTTCTTSCCCHHHHHTTCCSSSEEEETTE
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHhCC----EEEEecccccchhHHHHHHcCCeEeCEEEECCE
Confidence            44445677788 9999999999998876543    33344332   3557788899999999999875

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=95.03  E-value=0.038  Score=50.66  Aligned_cols=44  Identities=9%  Similarity=-0.025  Sum_probs=37.7

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKS  546 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d  546 (570)
                      ...||.+.|+|.+. |++|+...+.+.+++++.+..++++.|+.|
T Consensus        30 ~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d   74 (188)
T 2cvb_A           30 QFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINAN   74 (188)
T ss_dssp             GCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECC
T ss_pred             HhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcC
Confidence            45789999999887 999999999999999874433999999985

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=95.00  E-value=0.024  Score=50.97  Aligned_cols=54  Identities=17%  Similarity=0.019  Sum_probs=41.2

Q ss_pred             ccCCeE-EEEEec-CC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhccc
Q 008311          503 IKEGKY-IFLYGG-DD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~-I~lYfg-ad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~  557 (570)
                      ...||. +.|+|. +. |++|+...+.+.++|++ .+..++++.|+.|. .+.++++.+
T Consensus        25 ~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~-~~~~~~~~~   82 (161)
T 3drn_A           25 DYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDD-INSHKRFKE   82 (161)
T ss_dssp             GTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCC-HHHHHHHHH
T ss_pred             HhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCC-HHHHHHHHH
Confidence            457887 888886 66 99999999999999976 34569999999985 334444433

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=95.00  E-value=0.024  Score=47.99  Aligned_cols=61  Identities=7%  Similarity=0.086  Sum_probs=45.4

Q ss_pred             CCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch----hhhhhccccccccccccCCC
Q 008311          505 EGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR----DKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       505 egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~----e~~~~~~~~~~~~~~~~~~~  569 (570)
                      +++.|.+|++..|++|+.+.+.+.++    +..++++-|..+...    ..+.+.+++..+|++.++|+
T Consensus        18 ~~~~vv~f~a~~C~~C~~~~~~l~~~----~~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~~~~g~   82 (116)
T 2e7p_A           18 SSAPVVVFSKTYCGYCNRVKQLLTQV----GASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGK   82 (116)
T ss_dssp             TSSSEEEEECTTCHHHHHHHHHHHHH----TCCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTE
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHc----CCCeEEEEccCCCChHHHHHHHHHHhCCCCcCEEEECCE
Confidence            34556665555599999999988877    456788888776652    45667778889999988885

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=94.97  E-value=0.044  Score=48.96  Aligned_cols=55  Identities=9%  Similarity=0.050  Sum_probs=43.1

Q ss_pred             ccCCeEEEEEecCC-Cch-HHHHHHHHHHHHhhCC----CCEEEEEEecCC---chhhhhhccc
Q 008311          503 IKEGKYIFLYGGDD-VEW-VRKFTTAARSVANTAR----IPLEMVYVGKST---KRDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w-~r~FT~~l~~vy~~~~----~~fEiv~Vs~d~---~~e~~~~~~~  557 (570)
                      ...||.+.|||.+. |++ |+...+.+.+++++.+    .+++++.|+.|.   +.+.++++.+
T Consensus        32 ~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~   95 (172)
T 2k6v_A           32 QFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAK   95 (172)
T ss_dssp             GSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHH
T ss_pred             HhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            45899999999777 998 9999999999997744    379999999874   2344554433

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=94.92  E-value=0.0085  Score=57.29  Aligned_cols=41  Identities=5%  Similarity=-0.075  Sum_probs=31.7

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--H---HHHHHHHhhhhhccCCCeEEEEEec
Q 008311          344 LRRKNVLLLISDLDISQEELSI--L---EQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L---~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      ..+|++++.||+.|||+|+.+.  |   .++-+++       ++++.++.+++
T Consensus       111 ~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~-------~~~v~~~~~~v  156 (197)
T 1un2_A          111 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKL-------PEGVKMTKYHV  156 (197)
T ss_dssp             CTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSS-------CTTCCEEEEEC
T ss_pred             CCCCCEEEEEECCCChhHHHhCcccccHHHHHHHC-------CCCCEEEEecc
Confidence            3578999999999999999987  4   5444443       24688888887

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=94.88  E-value=0.032  Score=56.41  Aligned_cols=62  Identities=10%  Similarity=0.025  Sum_probs=53.9

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~  566 (570)
                      .++.+.++|.+. |++|+.+.|.+.+++++.+..+.++.|..|. ...++.+.+++-++|++++
T Consensus        34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~   97 (298)
T 3ed3_A           34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMV   97 (298)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEE
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEE
Confidence            578899999888 9999999999999998876679999999885 3567888889999999876

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=94.87  E-value=0.027  Score=53.09  Aligned_cols=40  Identities=8%  Similarity=-0.169  Sum_probs=32.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      .||++++.|++.|||+|+.+.  |.++-+++       ++++.+..+|+
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~-------~~~v~~~~~p~   64 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSF-------KDDMYLRTEHV   64 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTC-------CTTEEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHC-------CCCeEEEEecC
Confidence            589999999999999999998  66665544       23688888887

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=94.87  E-value=0.059  Score=45.61  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=15.7

Q ss_pred             HHHHhCCCCCCceEEEECCCCcEEc
Q 008311          431 YVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       431 ~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                      .+.+.++..++|++++   +|+.+.
T Consensus        63 ~l~~~~g~~~vP~v~i---~g~~ig   84 (105)
T 2yan_A           63 GLKAYSNWPTYPQLYV---KGELVG   84 (105)
T ss_dssp             HHHHHHTCCSSCEEEE---TTEEEE
T ss_pred             HHHHHHCCCCCCeEEE---CCEEEe
Confidence            4556678899999864   577664

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=94.86  E-value=0.069  Score=43.49  Aligned_cols=21  Identities=19%  Similarity=0.200  Sum_probs=15.4

Q ss_pred             HHHHhCCCCCCceEEEECCCCcEE
Q 008311          431 YVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       431 ~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                      .+.+.+++.++|++++   +|+.+
T Consensus        58 ~l~~~~g~~~vP~l~~---~g~~i   78 (92)
T 3ic4_A           58 KVHSISGSYSVPVVVK---GDKHV   78 (92)
T ss_dssp             HHHHHHSSSCSCEEEE---TTEEE
T ss_pred             HHHHhcCCCCcCEEEE---CCEEE
Confidence            4566678899999887   66543

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=94.82  E-value=0.034  Score=53.11  Aligned_cols=44  Identities=14%  Similarity=0.045  Sum_probs=37.5

Q ss_pred             ccCCeE-EEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecC
Q 008311          503 IKEGKY-IFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKS  546 (570)
Q Consensus       503 ~~egk~-I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d  546 (570)
                      ...||. +.|+|.+. |++|+...+.+.+++++ .+..++++.|+.|
T Consensus        55 ~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d  101 (218)
T 3u5r_E           55 EFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSN  101 (218)
T ss_dssp             GGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECS
T ss_pred             HhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECC
Confidence            467884 88888777 99999999999999987 4456999999997

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=94.80  E-value=0.061  Score=45.36  Aligned_cols=16  Identities=0%  Similarity=-0.170  Sum_probs=13.4

Q ss_pred             EEEEecCCCHHhHHHH
Q 008311          350 LLLISDLDISQEELSI  365 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~  365 (570)
                      +..||++|||+|+.-.
T Consensus        24 v~ly~~~~Cp~C~~ak   39 (103)
T 3nzn_A           24 VIMYGLSTCVWCKKTK   39 (103)
T ss_dssp             EEEEECSSCHHHHHHH
T ss_pred             EEEEcCCCCchHHHHH
Confidence            4449999999999876

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=94.67  E-value=0.029  Score=50.35  Aligned_cols=60  Identities=10%  Similarity=0.005  Sum_probs=47.2

Q ss_pred             ccCCeEEEEEecCC-Cc-hHHHHHHHHHHHHhh---CCCCEEEEEEecC---Cchhhhhhcccccccc
Q 008311          503 IKEGKYIFLYGGDD-VE-WVRKFTTAARSVANT---ARIPLEMVYVGKS---TKRDKCGESWQPLQLK  562 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~-w~r~FT~~l~~vy~~---~~~~fEiv~Vs~d---~~~e~~~~~~~~~~~~  562 (570)
                      ...||.+.|+|.+. |+ +|+...+.+.+++++   .+.+++++.|+.|   ++.+.++++++..+++
T Consensus        30 ~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~   97 (174)
T 1xzo_A           30 SLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLS   97 (174)
T ss_dssp             GGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCC
T ss_pred             hcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence            36799999988777 99 999999999998864   3447999999998   4566777776665543

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=94.51  E-value=0.054  Score=48.21  Aligned_cols=45  Identities=7%  Similarity=-0.059  Sum_probs=38.6

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKST  547 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~  547 (570)
                      ...||.+.|+|.+. |++|+.-.+.+.+++++ .+..++++.|+.|.
T Consensus        28 ~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~   74 (169)
T 2v1m_A           28 KYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQ   74 (169)
T ss_dssp             GGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCC
T ss_pred             HcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCc
Confidence            46899999999887 99999999999999976 34469999999863

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=94.46  E-value=0.087  Score=42.77  Aligned_cols=16  Identities=6%  Similarity=0.050  Sum_probs=13.3

Q ss_pred             EEEEecCCCHHhHHHH
Q 008311          350 LLLISDLDISQEELSI  365 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~  365 (570)
                      ++.|+++|||+|+...
T Consensus         8 v~~y~~~~C~~C~~~~   23 (89)
T 2klx_A            8 IILYTRPNCPYCKRAR   23 (89)
T ss_dssp             EEEESCSCCTTTHHHH
T ss_pred             EEEEECCCChhHHHHH
Confidence            4568999999999765

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=94.41  E-value=0.12  Score=40.72  Aligned_cols=16  Identities=0%  Similarity=-0.162  Sum_probs=13.1

Q ss_pred             EEEEecCCCHHhHHHH
Q 008311          350 LLLISDLDISQEELSI  365 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~  365 (570)
                      ++.|+++|||+|+...
T Consensus         3 i~~y~~~~C~~C~~~~   18 (82)
T 1fov_A            3 VEIYTKETCPYCHRAK   18 (82)
T ss_dssp             EEEEECSSCHHHHHHH
T ss_pred             EEEEECCCChhHHHHH
Confidence            3458999999999765

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=94.35  E-value=0.033  Score=44.38  Aligned_cols=61  Identities=7%  Similarity=0.158  Sum_probs=42.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCC-chhhhhhccc--cccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKST-KRDKCGESWQ--PLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~-~~e~~~~~~~--~~~~~~~~~~~~  569 (570)
                      |-+|+...|++|+...+.|.++..+ .+..|+.+-+..+. ..+++.+..+  ...+|++.++|+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~~~g~   67 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQ   67 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTE
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeEEECCE
Confidence            4456555699999999999998765 45555544444332 1245666667  889999998885

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=94.27  E-value=0.014  Score=55.06  Aligned_cols=64  Identities=17%  Similarity=0.136  Sum_probs=44.3

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHH---HHHHHhhCCCCEEEEEEecCCchhhhhhcc-------cccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTA---ARSVANTARIPLEMVYVGKSTKRDKCGESW-------QPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~---l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~-------~~~~~~~~~~  566 (570)
                      ..+||.|.|.|+++ |+|||.+.+.   ..++++..+.+|-.+-|..|...+-.+.++       ++-++|++++
T Consensus        36 ~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~v~  110 (173)
T 3ira_A           36 RKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNII  110 (173)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEEEE
T ss_pred             HHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcceee
Confidence            36899999999999 9999998873   234443333367777776665444334442       7888998775

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=94.12  E-value=0.049  Score=47.73  Aligned_cols=57  Identities=7%  Similarity=-0.162  Sum_probs=44.9

Q ss_pred             EEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCC--------chhhhhhcccccccccccc
Q 008311          508 YIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKST--------KRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       508 ~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~--------~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+.++|.+. |++|+.+.|.+.+++++.+  +.++.|..++        ...++.+.+++-.+||+++
T Consensus        33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~   98 (135)
T 3emx_A           33 DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVF   98 (135)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEE
T ss_pred             cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEE
Confidence            778888888 9999999999999998766  6677776632        2345566788889999876

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=94.11  E-value=0.076  Score=48.97  Aligned_cols=55  Identities=9%  Similarity=-0.094  Sum_probs=43.0

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCC-------chhhhhhccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKST-------KRDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~-------~~e~~~~~~~  557 (570)
                      ...||.+.|+|.+. |++|+.-.+.+.+++++ .+..++++.|+.|.       +.+.+++..+
T Consensus        46 ~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~  109 (185)
T 2gs3_A           46 KYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAA  109 (185)
T ss_dssp             GGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHH
T ss_pred             HcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHH
Confidence            46899999998777 99999999999999976 34569999999763       3455555543

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=94.11  E-value=0.12  Score=44.11  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=16.4

Q ss_pred             HHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          430 RYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       430 ~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                      ..+.+.++...+|++++   +|+.+.
T Consensus        63 ~~l~~~~g~~tvP~ifi---~g~~ig   85 (113)
T 3rhb_A           63 KVLERLTGQHTVPNVFV---CGKHIG   85 (113)
T ss_dssp             HHHHHHHSCCSSCEEEE---TTEEEE
T ss_pred             HHHHHHhCCCCcCEEEE---CCEEEc
Confidence            34556678899999865   677764

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=94.11  E-value=0.043  Score=50.45  Aligned_cols=43  Identities=9%  Similarity=0.051  Sum_probs=35.6

Q ss_pred             cCCe-EEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecC
Q 008311          504 KEGK-YIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKS  546 (570)
Q Consensus       504 ~egk-~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d  546 (570)
                      ..|| .+.|+|.+. |++|+...+.+.+++++. +..++++.|+.|
T Consensus        43 ~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d   88 (196)
T 2ywi_A           43 VKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSN   88 (196)
T ss_dssp             HCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECS
T ss_pred             hCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECC
Confidence            5677 488888777 999999999999999763 346999999986

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=94.03  E-value=0.068  Score=48.02  Aligned_cols=57  Identities=7%  Similarity=-0.140  Sum_probs=44.4

Q ss_pred             ccCCeEEEEEecCC--CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccc
Q 008311          503 IKEGKYIFLYGGDD--VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       503 ~~egk~I~lYfgad--~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      ...||.+.|+|.+.  |++|+...+.+.+++++. ..++++.|+.|.+ +.+++..+..++
T Consensus        41 ~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~-~~~~~~~~~~~~   99 (167)
T 2jsy_A           41 DMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLP-FAQARWCGANGI   99 (167)
T ss_dssp             HHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSG-GGTSCCGGGSSC
T ss_pred             HhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCH-HHHHHHHHhcCC
Confidence            34688888887543  999999999999999876 7899999999864 456666655544

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=94.02  E-value=0.044  Score=43.32  Aligned_cols=57  Identities=5%  Similarity=0.139  Sum_probs=44.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|+...|++|+...+.|.+.    +++||.+-|..+.. .+++.+..+...+|++.++|+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~~~g~   60 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK----GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQ   60 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEETTE
T ss_pred             EEEEECCCChhHHHHHHHHHHC----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence            5578777799999887777654    88999998886532 345677778889999998885

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=93.88  E-value=0.061  Score=58.92  Aligned_cols=63  Identities=6%  Similarity=0.002  Sum_probs=53.8

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCC---CCEEEEEEecCC-chhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTAR---IPLEMVYVGKST-KRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~---~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..||.+.|+|.+. |++||.|.|.+.+++++.+   ..+.++.|..|+ ...++.+-+++.++|++++
T Consensus        28 ~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PTl~~   95 (519)
T 3t58_A           28 GSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRF   95 (519)
T ss_dssp             SCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSEEEE
T ss_pred             hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCEEEE
Confidence            3579999999999 9999999999999997633   489999999875 4567888899999999875

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=93.84  E-value=0.17  Score=41.04  Aligned_cols=16  Identities=0%  Similarity=-0.058  Sum_probs=13.2

Q ss_pred             EEEEecCCCHHhHHHH
Q 008311          350 LLLISDLDISQEELSI  365 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~  365 (570)
                      ++.|+++|||+|+.-.
T Consensus         8 v~ly~~~~C~~C~~~~   23 (92)
T 2khp_A            8 VIIYTRPGCPYCARAK   23 (92)
T ss_dssp             EEEEECTTCHHHHHHH
T ss_pred             EEEEECCCChhHHHHH
Confidence            4568999999999755

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=93.80  E-value=0.061  Score=48.02  Aligned_cols=56  Identities=7%  Similarity=0.041  Sum_probs=42.9

Q ss_pred             ccCCeEEEEEecC-C-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhccccc
Q 008311          503 IKEGKYIFLYGGD-D-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQPL  559 (570)
Q Consensus       503 ~~egk~I~lYfga-d-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~~  559 (570)
                      ...||.+.|||.+ . |++|+.-.+.+.++|++ .+..++++.|+.| +.+.++++.+..
T Consensus        32 ~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d-~~~~~~~~~~~~   90 (163)
T 3gkn_A           32 AHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRD-SVKSHDNFCAKQ   90 (163)
T ss_dssp             GGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESS-CHHHHHHHHHHH
T ss_pred             HhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHHh
Confidence            4578888888865 4 99999999999999976 3456999999998 455555555443

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=93.79  E-value=0.076  Score=49.39  Aligned_cols=46  Identities=11%  Similarity=0.050  Sum_probs=39.3

Q ss_pred             ccCCeEEEEEec-CC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCc
Q 008311          503 IKEGKYIFLYGG-DD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTK  548 (570)
Q Consensus       503 ~~egk~I~lYfg-ad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~  548 (570)
                      ...||.+.|||. +. |++|+...+.+.+++++ .+..++++.|+.|.+
T Consensus        42 ~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~   90 (195)
T 2bmx_A           42 EHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSE   90 (195)
T ss_dssp             SSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCH
T ss_pred             HhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence            357999999998 77 99999999999999876 345799999999863

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=93.67  E-value=0.086  Score=46.24  Aligned_cols=37  Identities=8%  Similarity=-0.016  Sum_probs=32.7

Q ss_pred             eEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEec
Q 008311          507 KYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGK  545 (570)
Q Consensus       507 k~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~  545 (570)
                      |.+.|+|.+. |++|+...+.+.+++++.  .++++.|+.
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~   68 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISR   68 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEEC
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeC
Confidence            7777877666 999999999999999877  888999988

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=93.56  E-value=0.12  Score=45.30  Aligned_cols=61  Identities=7%  Similarity=0.049  Sum_probs=49.2

Q ss_pred             CCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccc--cccccc
Q 008311          505 EGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQ--LKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~--~~~~~~  566 (570)
                      .++.+.++|.+.|++|+.+.+.+.+++++.+..+-++.|..|... ++-+.++..+  +|++++
T Consensus        22 ~~~pv~v~f~a~~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~-~~a~~~gi~~~~iPtl~i   84 (133)
T 2djk_A           22 AGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFG-AHAGNLNLKTDKFPAFAI   84 (133)
T ss_dssp             TTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTG-GGTTTTTCCSSSSSEEEE
T ss_pred             CCCCEEEEEecChhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhH-HHHHHcCCCcccCCEEEE
Confidence            345566778777999999999999999987777888888887654 4677788888  998864

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=93.45  E-value=0.076  Score=51.38  Aligned_cols=59  Identities=14%  Similarity=0.148  Sum_probs=48.5

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .|+.+.++|.+. |++|+.+.+.+.+++++.+ .+.++.|..+  ...+.+.+++..+|++++
T Consensus       119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~--~~~l~~~~~i~~~PTl~~  178 (217)
T 2trc_P          119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS--NTGAGDRFSSDVLPTLLV  178 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH--HHTCSTTSCGGGCSEEEE
T ss_pred             CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC--cHHHHHHCCCCCCCEEEE
Confidence            468999999888 9999999999999987753 6777777776  455777789999999875

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=93.41  E-value=0.059  Score=49.53  Aligned_cols=62  Identities=8%  Similarity=0.005  Sum_probs=43.3

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHH---HhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSV---ANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~v---y~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..+||.|.|+|+++ |+|||.+.+.+.+.   .+..+..|-.|-|..+  .......+++.++||+++
T Consensus        41 ~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e--~~~~~~~~~v~~~PT~~f  106 (151)
T 3ph9_A           41 QKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHE--TTDKNLSPDGQYVPRIMF  106 (151)
T ss_dssp             HHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSC--CSCGGGCTTCCCSSEEEE
T ss_pred             HHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCC--chhhHhhcCCCCCCEEEE
Confidence            46899999999999 99999999987753   2222345655555422  222344567889999876

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=93.41  E-value=0.098  Score=47.50  Aligned_cols=53  Identities=15%  Similarity=0.068  Sum_probs=34.9

Q ss_pred             ccccCCCccccccccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCC-CEEEEEEe
Q 008311          490 LLVDGIDPLVLDWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARI-PLEMVYVG  544 (570)
Q Consensus       490 ll~d~~d~~i~~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~-~fEiv~Vs  544 (570)
                      |+.++-++.+.  -..+|..-+.|.+- ||+|+.|.+.+.+++++.+. .|+++.+.
T Consensus         8 l~~~~~~~~~G--~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p   62 (175)
T 3gyk_A            8 LFNDPNAPVLG--NPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWP   62 (175)
T ss_dssp             HHCCTTSCEEE--CTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             HhcCCCCCCcC--CCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCC
Confidence            34445556554  24566655555555 99999999999999887554 45555543

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=93.19  E-value=0.07  Score=43.46  Aligned_cols=59  Identities=12%  Similarity=0.231  Sum_probs=45.3

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch------hhhhhccccccccccccCCC
Q 008311          507 KYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR------DKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       507 k~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~------e~~~~~~~~~~~~~~~~~~~  569 (570)
                      +.|-||+...|++|+.--..|.+.    +.++|.+-|...+..      +.+.+......+|+++++|+
T Consensus        12 ~~v~ly~~~~Cp~C~~~~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~   76 (92)
T 3ic4_A           12 AEVLMYGLSTCPHCKRTLEFLKRE----GVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDK   76 (92)
T ss_dssp             SSSEEEECTTCHHHHHHHHHHHHH----TCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTE
T ss_pred             ceEEEEECCCChHHHHHHHHHHHc----CCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCE
Confidence            347789888899998866666554    899999999875532      55666677889999999875

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=93.15  E-value=0.12  Score=48.51  Aligned_cols=58  Identities=16%  Similarity=0.066  Sum_probs=45.5

Q ss_pred             ccCCeEEEEEecCC-Cch-HHHHHHHHHHHHhhC----CCCEEEEEEecCC---chhhhhhcccccc
Q 008311          503 IKEGKYIFLYGGDD-VEW-VRKFTTAARSVANTA----RIPLEMVYVGKST---KRDKCGESWQPLQ  560 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w-~r~FT~~l~~vy~~~----~~~fEiv~Vs~d~---~~e~~~~~~~~~~  560 (570)
                      ...||.+.|+|.+. |++ |+...+.+.+++++.    +..++++.|+-|.   +.+.++++++..+
T Consensus        38 ~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~  104 (200)
T 2b7k_A           38 NLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFH  104 (200)
T ss_dssp             GGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSC
T ss_pred             HcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcC
Confidence            35799999999777 998 999999999988642    5689999999984   5566666655443

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=93.09  E-value=0.074  Score=41.13  Aligned_cols=56  Identities=18%  Similarity=0.135  Sum_probs=40.4

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|+...|++|+...+.|.+    .+.+||.+-+..+.. .+.++ ..+...+|+++++|+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~----~~i~~~~~di~~~~~~~~~~~-~~~~~~vP~l~~~g~   59 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDR----AGLAYNTVDISLDDEARDYVM-ALGYVQAPVVEVDGE   59 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH----TTCCCEEEETTTCHHHHHHHH-HTTCBCCCEEEETTE
T ss_pred             EEEEeCCCChHHHHHHHHHHH----cCCCcEEEECCCCHHHHHHHH-HcCCCccCEEEECCe
Confidence            457777779999987777654    488888888776533 23333 467788999998875

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=93.05  E-value=0.061  Score=49.59  Aligned_cols=64  Identities=8%  Similarity=0.004  Sum_probs=46.7

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecCCchh-hhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKSTKRD-KCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d~~~e-~~~~~~~~~~~~~~~~  566 (570)
                      -.+||.|.|||+++ |.||+.|....   .+|.+..+.+|-.+.|..++++. ++.+.+++-..|++++
T Consensus        39 k~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~f  107 (153)
T 2dlx_A           39 QMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSI  107 (153)
T ss_dssp             HHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEE
T ss_pred             HHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEE
Confidence            35799999999998 99999996433   23322223378888887766543 5778888899999865

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=93.05  E-value=0.34  Score=40.95  Aligned_cols=16  Identities=0%  Similarity=-0.211  Sum_probs=13.3

Q ss_pred             EEEEecCCCHHhHHHH
Q 008311          350 LLLISDLDISQEELSI  365 (570)
Q Consensus       350 lL~FwAsWCpPCr~e~  365 (570)
                      +..|+++|||+|+.-.
T Consensus        18 v~vy~~~~Cp~C~~ak   33 (99)
T 3qmx_A           18 IEIYTWSTCPFCMRAL   33 (99)
T ss_dssp             EEEEECTTCHHHHHHH
T ss_pred             EEEEEcCCChhHHHHH
Confidence            3459999999999876

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=92.97  E-value=0.12  Score=47.38  Aligned_cols=61  Identities=10%  Similarity=-0.031  Sum_probs=45.6

Q ss_pred             ccccccCCeEEEEEecCC-Cc-hHHHHHHHHHHHHh---hCCCCEEEEEEecC---Cchhhhhhccccc
Q 008311          499 VLDWIKEGKYIFLYGGDD-VE-WVRKFTTAARSVAN---TARIPLEMVYVGKS---TKRDKCGESWQPL  559 (570)
Q Consensus       499 i~~~~~egk~I~lYfgad-~~-w~r~FT~~l~~vy~---~~~~~fEiv~Vs~d---~~~e~~~~~~~~~  559 (570)
                      +...-..||.+-|||+.- |+ ||..-.+.+.++++   +.+.++++|+||-|   ++-+.++++.+..
T Consensus        25 v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~   93 (170)
T 4hde_A           25 FGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKF   93 (170)
T ss_dssp             EEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTT
T ss_pred             EeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHc
Confidence            333457899999999766 86 99888888888765   46788999999976   3446667666543

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=92.93  E-value=0.1  Score=47.63  Aligned_cols=59  Identities=10%  Similarity=-0.065  Sum_probs=46.0

Q ss_pred             ccCCeEEEEEecCC-Cc-hHHHHHHHHHHHHhh---CCCCEEEEEEecC--Cchhhhhhccccccc
Q 008311          503 IKEGKYIFLYGGDD-VE-WVRKFTTAARSVANT---ARIPLEMVYVGKS--TKRDKCGESWQPLQL  561 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~-w~r~FT~~l~~vy~~---~~~~fEiv~Vs~d--~~~e~~~~~~~~~~~  561 (570)
                      ...||.+.|||.+. |+ +|+.-.+.+.+++++   .+.++++|.||-|  +..+.++++.+..++
T Consensus        25 ~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~   90 (170)
T 3me7_A           25 NLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGI   90 (170)
T ss_dssp             GGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTC
T ss_pred             HhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCC
Confidence            45699999999776 97 699999999999876   3578999999987  345566666555543

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=92.85  E-value=0.086  Score=44.50  Aligned_cols=62  Identities=10%  Similarity=0.146  Sum_probs=43.2

Q ss_pred             cCCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          504 KEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       504 ~egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      .....|-+|+...|++|+...+.|.++.+  +..|+.+-|..+.. +.+.+-++ ..+|++.++|+
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~--~i~~~~vdi~~~~~-~el~~~~g-~~vP~l~~~g~   75 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD--RFILQEVDITLPEN-STWYERYK-FDIPVFHLNGQ   75 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSS--SSEEEEEETTSSTT-HHHHHHSS-SSCSEEEESSS
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhh--CCeEEEEECCCcch-HHHHHHHC-CCCCEEEECCE
Confidence            44556777766669999998888876632  46666666652233 45555567 89999999886

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=92.73  E-value=0.09  Score=48.38  Aligned_cols=46  Identities=13%  Similarity=0.016  Sum_probs=38.9

Q ss_pred             ccCCeEEEEEec-CC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCc
Q 008311          503 IKEGKYIFLYGG-DD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTK  548 (570)
Q Consensus       503 ~~egk~I~lYfg-ad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~  548 (570)
                      ...||.+.|||. +. |++|+...+.+.+++++. +..++++.|+.|.+
T Consensus        28 ~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~   76 (187)
T 1we0_A           28 DLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTH   76 (187)
T ss_dssp             TTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCH
T ss_pred             HHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence            357899999997 77 999999999999998763 34799999999863

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=92.72  E-value=0.18  Score=45.60  Aligned_cols=57  Identities=5%  Similarity=-0.081  Sum_probs=43.9

Q ss_pred             ccCCeEEEEEe--cCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccc
Q 008311          503 IKEGKYIFLYG--GDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       503 ~~egk~I~lYf--gad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      ...||.+-|+|  +..|++|+.-.+.+.++|++. ..++++.|+.|.+ +..++..+..++
T Consensus        44 ~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d~~-~~~~~~~~~~~~  102 (171)
T 2yzh_A           44 GAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMDLP-FAQKRFCESFNI  102 (171)
T ss_dssp             SCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCH-HHHHHHHHHTTC
T ss_pred             HhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCCCH-HHHHHHHHHcCC
Confidence            35788888887  445999999999999999877 7899999999864 445555544433

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=92.70  E-value=0.071  Score=49.66  Aligned_cols=51  Identities=8%  Similarity=-0.123  Sum_probs=41.0

Q ss_pred             CCeEEEEEec-CC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhcc
Q 008311          505 EGKYIFLYGG-DD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESW  556 (570)
Q Consensus       505 egk~I~lYfg-ad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~  556 (570)
                      .||.+.|||. +. |++|+...+.+.+++++ .+.+++++.|+.|.+ +..++..
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~-~~~~~~~   85 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSE-QVHFAWK   85 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCH-HHHHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCH-HHHHHHH
Confidence            7999999998 77 99999999999999876 345799999999863 3444333

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=92.70  E-value=0.15  Score=53.14  Aligned_cols=44  Identities=9%  Similarity=-0.084  Sum_probs=37.9

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecC
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKS  546 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d  546 (570)
                      ...||.+.|+|.+. |++|+...+.+.+++++. +..++++.|+.|
T Consensus        79 dl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d  124 (352)
T 2hyx_A           79 SLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTP  124 (352)
T ss_dssp             GGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             HhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECC
Confidence            45799999999888 999999999999999763 447999999865

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=92.63  E-value=0.2  Score=47.69  Aligned_cols=55  Identities=11%  Similarity=-0.013  Sum_probs=43.7

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCC-------chhhhhhccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKST-------KRDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~-------~~e~~~~~~~  557 (570)
                      ...||.+.|+|.+. |++|++-.|.|.++|++ .+..++++.|+.|.       +.++++++++
T Consensus        44 ~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~  107 (208)
T 2f8a_A           44 SLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK  107 (208)
T ss_dssp             GGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHH
T ss_pred             HcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHH
Confidence            46899999999888 99999999999999976 34469999999862       3456665553

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=92.61  E-value=0.21  Score=47.25  Aligned_cols=57  Identities=11%  Similarity=-0.115  Sum_probs=46.0

Q ss_pred             ccCCeEEEEEec-C-CCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccc
Q 008311          503 IKEGKYIFLYGG-D-DVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       503 ~~egk~I~lYfg-a-d~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      ...||++.|+|. + .|++|+.=.+.+.++|++. ..++++.||.|. .+.+++..+..++
T Consensus        75 d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~~v~vv~Is~D~-~~~~~~~~~~~~~  133 (200)
T 3zrd_A           75 SFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-ENTVVLCISSDL-PFAQSRFCGAEGL  133 (200)
T ss_dssp             GGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-TTEEEEEEESSC-HHHHTTCTTTTTC
T ss_pred             HhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-CCCEEEEEECCC-HHHHHHHHHHcCC
Confidence            467998888885 4 4999999999999999887 789999999985 4556666666555

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=92.57  E-value=0.09  Score=42.04  Aligned_cols=57  Identities=4%  Similarity=-0.002  Sum_probs=43.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc---hhhhhhcccc-----ccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK---RDKCGESWQP-----LQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~---~e~~~~~~~~-----~~~~~~~~~~~  569 (570)
                      |-+|+...|++|+.--..|    ++.+.++|.+.|..+..   .+++.+..+.     ..+|.+.++|+
T Consensus         6 v~ly~~~~Cp~C~~~~~~L----~~~~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i~g~   70 (89)
T 3msz_A            6 VKIYTRNGCPYCVWAKQWF----EENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDDE   70 (89)
T ss_dssp             EEEEECTTCHHHHHHHHHH----HHTTCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEETTE
T ss_pred             EEEEEcCCChhHHHHHHHH----HHcCCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEECCE
Confidence            7788888899998755544    55689999999876554   2456666666     88999999885

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=92.57  E-value=0.14  Score=48.92  Aligned_cols=52  Identities=15%  Similarity=-0.005  Sum_probs=42.0

Q ss_pred             CCeEEEEEec-CC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhccc
Q 008311          505 EGKYIFLYGG-DD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESWQ  557 (570)
Q Consensus       505 egk~I~lYfg-ad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~~  557 (570)
                      .||.+.|||. ++ |++|+.-.+.+.++|++- +.++++|.|+.|.+ +..++..+
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~-~~~~~~~~  105 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSK-YTHLAWKK  105 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCH-HHHHHHHS
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHH
Confidence            7899999997 77 999999999999998763 46899999999854 34444444

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=92.48  E-value=0.19  Score=43.98  Aligned_cols=56  Identities=5%  Similarity=-0.034  Sum_probs=43.6

Q ss_pred             CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ++.+.++|.+. |+||+.+.|.+.+++++.. .+..+-|.-|..    -+.+++..+||+++
T Consensus        23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd~d~~----~~~~~v~~~PT~~~   79 (118)
T 3evi_A           23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAIVNSC----IQHYHDNCLPTIFV   79 (118)
T ss_dssp             TCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEEGGGT----STTCCGGGCSEEEE
T ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEEhHHh----HHHCCCCCCCEEEE
Confidence            45889999888 9999999999999998743 455566665543    36678899999875

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=92.45  E-value=0.16  Score=48.71  Aligned_cols=47  Identities=13%  Similarity=0.057  Sum_probs=40.0

Q ss_pred             ccCCeEEEEEecC-C-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCch
Q 008311          503 IKEGKYIFLYGGD-D-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKR  549 (570)
Q Consensus       503 ~~egk~I~lYfga-d-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~  549 (570)
                      ...||.+.|+|.+ . |++|+.-.+.|.++|++ .+..+++|.|+.|.++
T Consensus        66 ~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~  115 (222)
T 3ztl_A           66 DYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQY  115 (222)
T ss_dssp             GGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHH
T ss_pred             HhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence            4589999999985 5 99999999999999976 3557999999998743

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=92.30  E-value=0.18  Score=47.25  Aligned_cols=46  Identities=13%  Similarity=0.065  Sum_probs=39.2

Q ss_pred             ccCCeEEEEEec-CC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCc
Q 008311          503 IKEGKYIFLYGG-DD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTK  548 (570)
Q Consensus       503 ~~egk~I~lYfg-ad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~  548 (570)
                      ...||.+.|||. ++ |++|+...+.+.+++++ .+..++++.|+.|.+
T Consensus        33 ~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~   81 (202)
T 1uul_A           33 SYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSE   81 (202)
T ss_dssp             GGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCH
T ss_pred             HhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence            357899999997 77 99999999999999876 356799999999864

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=92.24  E-value=0.068  Score=50.07  Aligned_cols=40  Identities=5%  Similarity=-0.113  Sum_probs=29.4

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--H---HHHHHHHhhhhhccCCCeEEEEEec
Q 008311          345 RRKNVLLLISDLDISQEELSI--L---EQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L---~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      .++++++.|++.|||+|+.+.  +   .++-+++       ++++.++++++
T Consensus        13 ~~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~   57 (189)
T 3l9v_A           13 VDAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVL-------PQGSRMVKYHV   57 (189)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTC-------CTTCCEEEEEC
T ss_pred             CCCCEEEEEECCCChhHHHHhHhccchHHHHHhC-------CCCCEEEEEec
Confidence            457889999999999999987  4   2343333       23678888876

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=92.16  E-value=0.52  Score=39.68  Aligned_cols=15  Identities=0%  Similarity=-0.431  Sum_probs=12.4

Q ss_pred             EEEecCCCHHhHHHH
Q 008311          351 LLISDLDISQEELSI  365 (570)
Q Consensus       351 L~FwAsWCpPCr~e~  365 (570)
                      ..|+.+|||.|++--
T Consensus         7 ~vYs~~~Cp~C~~aK   21 (92)
T 2lqo_A            7 TIYTTSWCGYCLRLK   21 (92)
T ss_dssp             EEEECTTCSSHHHHH
T ss_pred             EEEcCCCCHhHHHHH
Confidence            458999999999854

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=92.16  E-value=0.057  Score=48.76  Aligned_cols=57  Identities=5%  Similarity=0.021  Sum_probs=39.1

Q ss_pred             EEEEEecCC---CchHHHHHHHHHHHHhhCCCCEE--EEEEecCCchhhhhhcccccccccccc
Q 008311          508 YIFLYGGDD---VEWVRKFTTAARSVANTARIPLE--MVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       508 ~I~lYfgad---~~w~r~FT~~l~~vy~~~~~~fE--iv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+.++|.++   |++|+.+.|.+.+++++. .++.  ++.|.-|...+ +.+-+++.++||+++
T Consensus        36 ~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~~~~-la~~~~V~~iPT~~~   97 (142)
T 2es7_A           36 DGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQSEA-IGDRFNVRRFPATLV   97 (142)
T ss_dssp             SEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHHHHH-HHHTTTCCSSSEEEE
T ss_pred             CEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCCCHH-HHHhcCCCcCCeEEE
Confidence            344455443   899999999999999876 4566  88888776554 445578999999876

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=92.10  E-value=0.19  Score=46.26  Aligned_cols=55  Identities=9%  Similarity=0.009  Sum_probs=42.6

Q ss_pred             ccCCeEEEEEec-CC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhcccc
Q 008311          503 IKEGKYIFLYGG-DD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQP  558 (570)
Q Consensus       503 ~~egk~I~lYfg-ad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~  558 (570)
                      ...||++-|||. +. |++|+.=.+.|.++|++ .+..++++.|+.|.++ ..++..+.
T Consensus        48 d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~-~~~~~~~~  105 (179)
T 3ixr_A           48 DYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVK-SHDSFCAK  105 (179)
T ss_dssp             GGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHH-HHHHHHHH
T ss_pred             HHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHH-HHHHHHHH
Confidence            467898888885 66 99999999999999976 4567999999998643 44444443

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=92.07  E-value=0.22  Score=44.25  Aligned_cols=22  Identities=14%  Similarity=0.310  Sum_probs=15.6

Q ss_pred             HHHHHhCCCCCCceEEEECCCCcEE
Q 008311          430 RYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       430 ~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                      ..+++.+|...+|+++ +  +|+.+
T Consensus        84 ~~L~~~~g~~tVP~vf-i--~g~~i  105 (129)
T 3ctg_A           84 DALEEISGQKTVPNVY-I--NGKHI  105 (129)
T ss_dssp             HHHHHHHSCCSSCEEE-E--TTEEE
T ss_pred             HHHHHHhCCCCCCEEE-E--CCEEE
Confidence            4566778889999965 4  46665

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=91.98  E-value=0.11  Score=48.01  Aligned_cols=44  Identities=18%  Similarity=0.118  Sum_probs=38.2

Q ss_pred             CCeEEEEEec-CC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCc
Q 008311          505 EGKYIFLYGG-DD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTK  548 (570)
Q Consensus       505 egk~I~lYfg-ad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~  548 (570)
                      .||.+.|+|. +. |++|+...+.+.+++++ .+..++++.|+.|.+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~   76 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSK   76 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCH
Confidence            8999999997 77 99999999999999876 346799999999853

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=91.98  E-value=0.11  Score=43.30  Aligned_cols=58  Identities=10%  Similarity=0.127  Sum_probs=43.4

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhCCCC---EEEEEEecCCc----hhhhhhccccccccccccCCC
Q 008311          508 YIFLYGGDDVEWVRKFTTAARSVANTARIP---LEMVYVGKSTK----RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       508 ~I~lYfgad~~w~r~FT~~l~~vy~~~~~~---fEiv~Vs~d~~----~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      .|-+|+...|++|+...+.|.+.    +..   |+.+-|..+..    ++.+.+..+...+|++.++|+
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~----~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~~~g~   77 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQL----PFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKE   77 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHS----CBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETTE
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHc----CCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEEECCE
Confidence            36677777799999888877664    444   88888877642    245677778889999998885

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=91.90  E-value=0.09  Score=42.68  Aligned_cols=56  Identities=7%  Similarity=0.100  Sum_probs=42.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcc-ccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESW-QPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~-~~~~~~~~~~~~~  569 (570)
                      |-+|+...|++|+...+.|.+.    +++|+.+-|. +...+.+.+.. +...+|++.++|+
T Consensus         8 v~~y~~~~C~~C~~~~~~L~~~----~i~~~~vdv~-~~~~~~l~~~~~~~~~vP~l~~~g~   64 (89)
T 2klx_A            8 IILYTRPNCPYCKRARDLLDKK----GVKYTDIDAS-TSLRQEMVQRANGRNTFPQIFIGDY   64 (89)
T ss_dssp             EEEESCSCCTTTHHHHHHHHHH----TCCEEEECSC-HHHHHHHHHHHHSSCCSCEEEETTE
T ss_pred             EEEEECCCChhHHHHHHHHHHc----CCCcEEEECC-HHHHHHHHHHhCCCCCcCEEEECCE
Confidence            5677777799999887777654    7888888776 34455677766 8889999988885

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=91.89  E-value=0.17  Score=46.30  Aligned_cols=56  Identities=11%  Similarity=-0.132  Sum_probs=40.9

Q ss_pred             ccCCeEEEEEecC-C-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccc
Q 008311          503 IKEGKYIFLYGGD-D-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       503 ~~egk~I~lYfga-d-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      ...||.+.|||.+ . |++|+.-.+.+.++|++  ..+++|.|+.|.++ ..++..+..++
T Consensus        41 ~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D~~~-~~~~~~~~~~~   98 (175)
T 1xvq_A           41 QFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKDLPF-AQKRFCGAEGT   98 (175)
T ss_dssp             GGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESSCHH-HHTTCC-----
T ss_pred             HcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECCCHH-HHHHHHHHcCC
Confidence            3578888888864 4 99999999999999988  77999999998654 44555554444

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=91.77  E-value=0.13  Score=40.56  Aligned_cols=56  Identities=16%  Similarity=0.173  Sum_probs=39.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|+...|++|+...+.|.+    .+.+|+.+-+..+.. .+.+++ ++...+|++.++|+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~----~~i~~~~vdi~~~~~~~~~~~~-~g~~~vP~~~~~g~   59 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMEN----RGFDFEMINVDRVPEAAEALRA-QGFRQLPVVIAGDL   59 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH----TTCCCEEEETTTCHHHHHHHHH-TTCCSSCEEEETTE
T ss_pred             EEEEcCCCChhHHHHHHHHHH----CCCCeEEEECCCCHHHHHHHHH-hCCCccCEEEECCE
Confidence            456777779999987777655    478888777765432 233333 57788999988774

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=91.61  E-value=0.3  Score=43.82  Aligned_cols=56  Identities=9%  Similarity=-0.233  Sum_probs=43.8

Q ss_pred             ccCCeEEEEEecC-C-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccc
Q 008311          503 IKEGKYIFLYGGD-D-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQ  560 (570)
Q Consensus       503 ~~egk~I~lYfga-d-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~  560 (570)
                      ...||.+-|||-+ . |++|+.-.+.+.++|++. ..++++.|+.|.++ ..++..+..+
T Consensus        39 ~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d~~~-~~~~~~~~~~   96 (163)
T 1psq_A           39 DFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLPF-AQKRWCGAEG   96 (163)
T ss_dssp             GGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHH-HHHHHHHHHT
T ss_pred             HhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CCcEEEEEECCCHH-HHHHHHHhcC
Confidence            4579999999853 4 999999999999999877 78999999998653 4455444433

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=91.47  E-value=0.19  Score=45.29  Aligned_cols=56  Identities=13%  Similarity=-0.132  Sum_probs=42.9

Q ss_pred             ccCCeEEEEEec--CCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccc
Q 008311          503 IKEGKYIFLYGG--DDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       503 ~~egk~I~lYfg--ad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      ...||.+-|+|.  ..|++|+.=.+.+.++|++  ..++++.|+.|.+ +..++..+..++
T Consensus        43 ~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~--~~~~vv~is~d~~-~~~~~~~~~~~~  100 (166)
T 3p7x_A           43 DYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK--EEGIVLTISADLP-FAQKRWCASAGL  100 (166)
T ss_dssp             GGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT--TTSEEEEEESSCH-HHHHHHHHHHTC
T ss_pred             HhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc--CCCEEEEEECCCH-HHHHHHHHHcCC
Confidence            457888777774  4499999999999999877  7899999998764 455555554444

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=91.46  E-value=0.56  Score=40.25  Aligned_cols=22  Identities=18%  Similarity=0.217  Sum_probs=16.0

Q ss_pred             HHHHhCCCCCCceEEEECCCCcEEc
Q 008311          431 YVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       431 ~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                      .+++..|...+|++++   +|+.+.
T Consensus        61 ~l~~~~g~~tvP~vfi---~g~~ig   82 (114)
T 3h8q_A           61 VLSEITNQKTVPNIFV---NKVHVG   82 (114)
T ss_dssp             HHHHHHSCCSSCEEEE---TTEEEE
T ss_pred             HHHHHhCCCccCEEEE---CCEEEe
Confidence            3555667888999877   777764

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=91.45  E-value=0.37  Score=43.45  Aligned_cols=57  Identities=7%  Similarity=-0.189  Sum_probs=45.6

Q ss_pred             ccCCeEEEEEec-C-CCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccc
Q 008311          503 IKEGKYIFLYGG-D-DVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       503 ~~egk~I~lYfg-a-d~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      ...||.+-|||. + .|++|+.=.+.+.+.|++. ..++++.||.|.+ +..++..+..++
T Consensus        40 ~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d~~-~~~~~~~~~~~~   98 (165)
T 1q98_A           40 DFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADLP-FAQARFCGAEGI   98 (165)
T ss_dssp             GGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSCH-HHHTTCTTTTTC
T ss_pred             HhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCCCH-HHHHHHHHHcCC
Confidence            457898888884 4 4999999999999999887 7899999999764 456666666555

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=91.42  E-value=0.28  Score=46.71  Aligned_cols=54  Identities=15%  Similarity=-0.029  Sum_probs=42.9

Q ss_pred             ccCCeEEEEEec-CC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhccc
Q 008311          503 IKEGKYIFLYGG-DD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYfg-ad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~  557 (570)
                      ...||.+.|||. +. |++|+.-.+.+.++|++ .+..+++|.||.|.++ ..++..+
T Consensus        45 d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~-~~~~~~~  101 (211)
T 2pn8_A           45 DYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQF-THLAWIN  101 (211)
T ss_dssp             GGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHH-HHHHHHT
T ss_pred             HhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH-HHHHHHH
Confidence            357899999997 77 99999999999999876 3468999999998654 3444444

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=91.41  E-value=0.17  Score=50.23  Aligned_cols=59  Identities=12%  Similarity=0.125  Sum_probs=46.7

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .|+.|.|+|.+. |++|+.+.|.+.+++++.. .+-++.|..+.  ..+.+.+++..+||+++
T Consensus       132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~-~v~f~kVd~d~--~~l~~~~~I~~~PTll~  191 (245)
T 1a0r_P          132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP-MVKFCKIKASN--TGAGDRFSSDVLPTLLV  191 (245)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT-TSEEEEEEHHH--HCCTTSSCTTTCSEEEE
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CCEEEEEeCCc--HHHHHHCCCCCCCEEEE
Confidence            488999999999 9999999999999998743 35556665544  45667788889999875

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=91.41  E-value=0.14  Score=41.58  Aligned_cols=58  Identities=5%  Similarity=0.060  Sum_probs=43.5

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhccccccccccccCCC
Q 008311          508 YIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       508 ~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      .|-+|+...|++|+...+.|.+    .+.+||.+-|..+. ..+.+++..+...+|++.++|+
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~----~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~~~g~   65 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLAR----KGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSV   65 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHH----TTCCCEEEESTTSHHHHHHHHHHHTSSCCCEEEETTE
T ss_pred             cEEEEECCCChhHHHHHHHHHH----cCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence            3668888789999987766654    48899998887653 2345666778888999888875

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=91.32  E-value=0.059  Score=47.76  Aligned_cols=60  Identities=3%  Similarity=-0.109  Sum_probs=43.2

Q ss_pred             eEEEEEecCC-CchHHHHHHHHHHHHhh--CCCCEEEEEEecCCch-hhhhhcccccccccccc
Q 008311          507 KYIFLYGGDD-VEWVRKFTTAARSVANT--ARIPLEMVYVGKSTKR-DKCGESWQPLQLKSLVT  566 (570)
Q Consensus       507 k~I~lYfgad-~~w~r~FT~~l~~vy~~--~~~~fEiv~Vs~d~~~-e~~~~~~~~~~~~~~~~  566 (570)
                      ..+-++|.++ |+||+.|.+.+...|+.  .+..+.++.|.-+.+. +....-.++..+|||++
T Consensus        19 ~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~   82 (116)
T 3dml_A           19 ELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVL   82 (116)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEE
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEE
Confidence            4577888888 99999999877766653  2334777777776643 34445557889999986

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=91.11  E-value=0.1  Score=47.84  Aligned_cols=62  Identities=5%  Similarity=0.018  Sum_probs=49.4

Q ss_pred             cCCeEEEEEecCC---CchHHHHHHHHHHHHhhCCCC-EEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD---VEWVRKFTTAARSVANTARIP-LEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad---~~w~r~FT~~l~~vy~~~~~~-fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..++.+.++|.++   |+|||...|.+.+++++.+.. +.++-|.-|.. .+.-.-+++.+||||++
T Consensus        32 ~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~-~~lA~~ygV~sIPTlil   97 (140)
T 2qgv_A           32 TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQS-EAIGDRFGAFRFPATLV   97 (140)
T ss_dssp             HTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHH-HHHHHHHTCCSSSEEEE
T ss_pred             hCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCC-HHHHHHcCCccCCEEEE
Confidence            3444556677776   789999999999999886666 88888888754 46777789999999975

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=91.08  E-value=0.096  Score=44.98  Aligned_cols=59  Identities=8%  Similarity=0.040  Sum_probs=44.1

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhCCCC---EEEEEEecCCc----hhhhhhccccccccccccCCC
Q 008311          507 KYIFLYGGDDVEWVRKFTTAARSVANTARIP---LEMVYVGKSTK----RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       507 k~I~lYfgad~~w~r~FT~~l~~vy~~~~~~---fEiv~Vs~d~~----~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      ..|-+|+...|++|+...+.|.+    .+.+   |+.+-|..+.+    .+.+.+..+...+|++.++|+
T Consensus        19 ~~vv~f~~~~Cp~C~~~~~~L~~----~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~   84 (114)
T 2hze_A           19 NKVTIFVKYTCPFCRNALDILNK----FSFKRGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIFFGKT   84 (114)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHTT----SCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEETTE
T ss_pred             CCEEEEEeCCChhHHHHHHHHHH----cCCCcCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEEECCE
Confidence            44667777779999877766644    4666   99888887742    346777778889999999885

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=90.93  E-value=0.19  Score=48.52  Aligned_cols=52  Identities=8%  Similarity=-0.151  Sum_probs=41.6

Q ss_pred             CCeEEEEEec-CC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhccc
Q 008311          505 EGKYIFLYGG-DD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQ  557 (570)
Q Consensus       505 egk~I~lYfg-ad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~  557 (570)
                      .||.+-|||. +. |++|+.-.+.+.++|++ .+..+++|.||.|.++ ..++..+
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~-~~~~~~~  109 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVY-SHLAWKN  109 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHH-HHHHHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHH
Confidence            8999999997 77 99999999999999876 3457999999997654 3444443

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=90.87  E-value=0.25  Score=44.04  Aligned_cols=53  Identities=2%  Similarity=-0.058  Sum_probs=38.1

Q ss_pred             cCCe--EEEEEe--cCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhcccc
Q 008311          504 KEGK--YIFLYG--GDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQP  558 (570)
Q Consensus       504 ~egk--~I~lYf--gad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~  558 (570)
                      ..||  .+-|||  +..|++|+.-.+.+.++|++ .+.. +++.|+.|.+ +.+++..+.
T Consensus        31 ~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~-~~~~~~~~~   88 (159)
T 2a4v_A           31 ITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSV-TSQKKFQSK   88 (159)
T ss_dssp             HHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCH-HHHHHHHHH
T ss_pred             HhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCH-HHHHHHHHH
Confidence            3455  777776  55699999999999999875 3334 9999998854 444554443

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=90.80  E-value=0.27  Score=47.11  Aligned_cols=46  Identities=22%  Similarity=0.114  Sum_probs=39.0

Q ss_pred             ccCCeEEEEEec-CC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCc
Q 008311          503 IKEGKYIFLYGG-DD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTK  548 (570)
Q Consensus       503 ~~egk~I~lYfg-ad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~  548 (570)
                      ...||.+.|||. ++ |++|+...+.+.++|++ .+..++++.|+.|..
T Consensus        53 d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~  101 (220)
T 1zye_A           53 DFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSH  101 (220)
T ss_dssp             GGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCH
T ss_pred             HhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence            357899999997 77 99999999999999876 345799999999864

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=90.63  E-value=0.27  Score=45.63  Aligned_cols=54  Identities=9%  Similarity=-0.020  Sum_probs=41.0

Q ss_pred             ccCCeEEEEEec--CCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhccc
Q 008311          503 IKEGKYIFLYGG--DDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYfg--ad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~  557 (570)
                      ...||.+-|+|-  ..|++|+.-.+.+.++|++ .+..++++.||.|.++ ..++..+
T Consensus        27 ~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~-~~~~~~~   83 (186)
T 1n8j_A           27 DTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHF-THKAWHS   83 (186)
T ss_dssp             HHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHH-HHHHHHH
T ss_pred             HHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHH-HHHHHHH
Confidence            357898888884  4599999999999999875 3457999999998653 3444443

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.60  E-value=0.91  Score=42.77  Aligned_cols=85  Identities=9%  Similarity=0.086  Sum_probs=50.8

Q ss_pred             ccCCCEEEEEEecCCCHHhHHHH---HH--HHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCcee
Q 008311          343 VLRRKNVLLLISDLDISQEELSI---LE--QIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYT  417 (570)
Q Consensus       343 ~LkGKvVlL~FwAsWCpPCr~e~---L~--~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~a  417 (570)
                      .-.+|.+++|+...||+.|..|-   |.  ++-+-+++       +|-+...++ +     .++..+.|-.+..+     
T Consensus        52 k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~-------nfV~w~~dv-~-----~~e~~~~~~~~~~~-----  113 (178)
T 2ec4_A           52 ARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ-------NFITWAWDL-T-----KDSNRARFLTMCNR-----  113 (178)
T ss_dssp             TTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH-------TEEEEEEEC-C-----SHHHHHHHHHHHHH-----
T ss_pred             hhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc-------CEEEEEEeC-C-----Cchhhhhhhhhhhh-----
Confidence            34689999999999999999886   22  23333432       475555554 1     23334444332210     


Q ss_pred             eccccccChHHHHHHHHhCCCCCCceEEEECCCC
Q 008311          418 VYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQG  451 (570)
Q Consensus       418 V~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqG  451 (570)
                       .+    ... .....+.|++.+.|++++|+++|
T Consensus       114 -~~----g~~-~a~~~~~~~~~~~P~l~ii~~~~  141 (178)
T 2ec4_A          114 -HF----GSV-VAQTIRTQKTDQFPLFLIIMGKR  141 (178)
T ss_dssp             -HT----CHH-HHHHHHHSCSTTCSEEEEECCCS
T ss_pred             -hh----HHH-HHHHHhhcCCCCCCeEEEEEcCC
Confidence             00    101 11223458999999999999875

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=90.58  E-value=0.42  Score=48.41  Aligned_cols=38  Identities=16%  Similarity=0.252  Sum_probs=30.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      .||.++..|+...||.|+++.  |.+.++..         .+.++.+|+
T Consensus       146 ~gk~~I~vFtDp~CPYCkkl~~~l~~~l~~~---------~Vr~i~~Pi  185 (273)
T 3tdg_A          146 NKDKILYIVSDPMCPHCQKELTKLRDHLKEN---------TVRMVVVGW  185 (273)
T ss_dssp             GTTCEEEEEECTTCHHHHHHHHTHHHHHHHC---------EEEEEECCC
T ss_pred             CCCeEEEEEECcCChhHHHHHHHHHHHhhCC---------cEEEEEeec
Confidence            689999999999999999998  77666532         356677776

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=90.34  E-value=0.29  Score=42.48  Aligned_cols=58  Identities=9%  Similarity=0.095  Sum_probs=42.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCC---CCEEEEEEecCCc----hhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTAR---IPLEMVYVGKSTK----RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~---~~fEiv~Vs~d~~----~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|+...|++|+..   |+.+.++.+   .+|+.+-|..+.+    .+.+++..+...+|++.++|+
T Consensus        27 Vvvf~~~~Cp~C~~a---lk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~vfi~g~   91 (118)
T 3c1r_A           27 IFVASKTYCPYCHAA---LNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGK   91 (118)
T ss_dssp             EEEEECSSCHHHHHH---HHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTE
T ss_pred             EEEEEcCCCcCHHHH---HHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEEEECCE
Confidence            667877779999876   244445556   8888888877653    346777778889999998885

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=90.04  E-value=0.4  Score=45.42  Aligned_cols=60  Identities=17%  Similarity=0.132  Sum_probs=46.6

Q ss_pred             CeEEEEEecC-------C-CchHHHHHHHHHHHHhhCC-----CCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          506 GKYIFLYGGD-------D-VEWVRKFTTAARSVANTAR-----IPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       506 gk~I~lYfga-------d-~~w~r~FT~~l~~vy~~~~-----~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +..+-++|.+       . |.|||.|.|.+.+++++-+     .++-++-|.-|... ++-+-+++..+|+|.+
T Consensus        37 ~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~-~la~~~~I~siPtl~~  109 (178)
T 3ga4_A           37 GYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVP-QLVKDLKLQNVPHLVV  109 (178)
T ss_dssp             TCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCH-HHHHHTTCCSSCEEEE
T ss_pred             CCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCH-HHHHHcCCCCCCEEEE
Confidence            5567777766       4 9999999999999987532     67778888777744 5666689999999864

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.03  E-value=0.34  Score=42.76  Aligned_cols=57  Identities=5%  Similarity=0.085  Sum_probs=43.2

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch----hhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR----DKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~----e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|+...|++|+...+.|.+.    +..|+.+-|..+...    +.+.+..+...+|++.++|+
T Consensus        29 vvvf~~~~Cp~C~~~~~~L~~~----~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~i~G~   89 (130)
T 2cq9_A           29 VVIFSKTSCSYCTMAKKLFHDM----NVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGT   89 (130)
T ss_dssp             EEEEECSSCSHHHHHHHHHHHH----TCCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEEETTE
T ss_pred             EEEEEcCCChHHHHHHHHHHHc----CCCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEEECCE
Confidence            5567766699999888877665    788988888776322    24677778889999998885

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=89.70  E-value=0.44  Score=41.44  Aligned_cols=59  Identities=14%  Similarity=0.317  Sum_probs=43.4

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccc--ccCCC
Q 008311          507 KYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSL--VTSGK  569 (570)
Q Consensus       507 k~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~--~~~~~  569 (570)
                      ..|-+|+...|++|+...+.|.++..+.+..|+.|=|..  +.+-..+ ++. .+|+|  .++|+
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~i~~~~vDId~--d~~l~~~-ygv-~VP~l~~~~dG~   90 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSWFELEVINIDG--NEHLTRL-YND-RVPVLFAVNEDK   90 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSCCCCEEEETTT--CHHHHHH-STT-SCSEEEETTTTE
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcCCeEEEEECCC--CHHHHHH-hCC-CCceEEEEECCE
Confidence            447777777799999999999999888787777666653  3343333 454 49999  77885

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=89.42  E-value=0.35  Score=40.86  Aligned_cols=61  Identities=7%  Similarity=0.083  Sum_probs=46.3

Q ss_pred             CCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhcc-ccccccccccCCC
Q 008311          505 EGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESW-QPLQLKSLVTSGK  569 (570)
Q Consensus       505 egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~-~~~~~~~~~~~~~  569 (570)
                      ....|-||....||+|++-...|.+.    +++||.+-|..+.. .+.+++.. +...+|.+.++|+
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~----~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi~g~   76 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRK----GVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQ   76 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHH----TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEETTE
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHC----CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEECCE
Confidence            44567899888899998777666554    88999998887643 34455555 7888999999885

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=89.40  E-value=0.5  Score=39.61  Aligned_cols=58  Identities=12%  Similarity=0.329  Sum_probs=43.5

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch--hh----hhhccccccccccccCC
Q 008311          507 KYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR--DK----CGESWQPLQLKSLVTSG  568 (570)
Q Consensus       507 k~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~--e~----~~~~~~~~~~~~~~~~~  568 (570)
                      ..|-+|+...||+|+.--+.|.+.    +.++|.+-|..++++  ++    +++......+|+++++|
T Consensus        22 ~~v~ly~~~~Cp~C~~ak~~L~~~----~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~   85 (103)
T 3nzn_A           22 GKVIMYGLSTCVWCKKTKKLLTDL----GVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIIND   85 (103)
T ss_dssp             SCEEEEECSSCHHHHHHHHHHHHH----TBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETT
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHc----CCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECC
Confidence            457788888899998877777654    889999999885432  22    23445778899999987

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=89.19  E-value=0.4  Score=42.53  Aligned_cols=58  Identities=9%  Similarity=0.112  Sum_probs=43.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCC---CCEEEEEEecCCc----hhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTAR---IPLEMVYVGKSTK----RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~---~~fEiv~Vs~d~~----~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|+...||+|+..   |+.+.++.+   .++|.+-|..+..    ++.+++..+...+|.+.++|+
T Consensus        39 Vvvy~~~~Cp~C~~a---~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~vfi~g~  103 (129)
T 3ctg_A           39 VFVAAKTYCPYCKAT---LSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGK  103 (129)
T ss_dssp             EEEEECTTCHHHHHH---HHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTE
T ss_pred             EEEEECCCCCchHHH---HHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEEEECCE
Confidence            678888889999866   244445556   8999999988764    346777777788999998885

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=89.07  E-value=0.51  Score=38.26  Aligned_cols=57  Identities=14%  Similarity=0.182  Sum_probs=41.1

Q ss_pred             EEEEecC----CCchHHHHHHHHHHHHhhCCCCEEEEEEe-----cCC-chhhhhhccccc-----ccccccc-CCC
Q 008311          509 IFLYGGD----DVEWVRKFTTAARSVANTARIPLEMVYVG-----KST-KRDKCGESWQPL-----QLKSLVT-SGK  569 (570)
Q Consensus       509 I~lYfga----d~~w~r~FT~~l~~vy~~~~~~fEiv~Vs-----~d~-~~e~~~~~~~~~-----~~~~~~~-~~~  569 (570)
                      |-||+..    .|++|++    ++++-++.++++|.+-|.     .+. .++.+++..+.-     ..|.+.+ +|+
T Consensus         2 v~iY~~~~~~~~Cp~C~~----ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~   74 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDN----AKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGS   74 (87)
T ss_dssp             EEEEECCTTTSCCHHHHH----HHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSC
T ss_pred             EEEEEeCCCCCcCccHHH----HHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCE
Confidence            5689988    8999965    445556679999999998     332 224566665666     7899998 875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=89.06  E-value=0.57  Score=50.65  Aligned_cols=63  Identities=11%  Similarity=0.099  Sum_probs=46.7

Q ss_pred             CCeE-EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          505 EGKY-IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       505 egk~-I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      .++. |-+|++..|++|+.+.+.+.+++.+.. ++++.-|.-|...+ +.+-+++..+|+++++|+
T Consensus       116 ~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v~~~~vd~~~~~~-~~~~~~i~svPt~~i~g~  179 (521)
T 1hyu_A          116 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGGTFQN-EITERNVMGVPAVFVNGK  179 (521)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETTTCHH-HHHHTTCCSSSEEEETTE
T ss_pred             CCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ceEEEEEechhhHH-HHHHhCCCccCEEEECCE
Confidence            3444 555556569999999999999876643 67777777665554 444458999999999885

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=88.91  E-value=0.44  Score=49.21  Aligned_cols=63  Identities=6%  Similarity=0.081  Sum_probs=50.6

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC------CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA------RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~------~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +.+++.+.++|.+. |++|+.+.|.+.+++++.      +..+-++-|..+...+ +.+-+++-+.||+++
T Consensus        19 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~-l~~~~~v~~~Pt~~~   88 (382)
T 2r2j_A           19 LNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSD-IAQRYRISKYPTLKL   88 (382)
T ss_dssp             HHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHH-HHHHTTCCEESEEEE
T ss_pred             HhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHH-HHHhcCCCcCCEEEE
Confidence            34688999999999 999999999999998753      4458888888877644 555678889999876

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=88.71  E-value=0.47  Score=43.04  Aligned_cols=58  Identities=5%  Similarity=0.080  Sum_probs=44.0

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch----hhhhhccccccccccccCCC
Q 008311          508 YIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR----DKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       508 ~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~----e~~~~~~~~~~~~~~~~~~~  569 (570)
                      .|-+|+...|++|+..-+.|.+.    ++.|+.+-|..+...    +.+.+..+...+|++.++|+
T Consensus        50 ~Vvvf~~~~Cp~C~~~k~~L~~~----~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~ifi~G~  111 (146)
T 2ht9_A           50 CVVIFSKTSCSYCTMAKKLFHDM----NVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGT  111 (146)
T ss_dssp             SEEEEECTTCHHHHHHHHHHHHH----TCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEEETTE
T ss_pred             CEEEEECCCChhHHHHHHHHHHc----CCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEEECCE
Confidence            35667777799999888877665    788998888776322    24667778889999998885

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.39  E-value=0.52  Score=40.54  Aligned_cols=62  Identities=11%  Similarity=0.057  Sum_probs=45.9

Q ss_pred             EEEEEecCCCchHHHHHH--HHHHHHhhCCCCEEEEEEecCC-chhhhhhcc--------ccccccccccCCC
Q 008311          508 YIFLYGGDDVEWVRKFTT--AARSVANTARIPLEMVYVGKST-KRDKCGESW--------QPLQLKSLVTSGK  569 (570)
Q Consensus       508 ~I~lYfgad~~w~r~FT~--~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~--------~~~~~~~~~~~~~  569 (570)
                      -|-||....|++|+.|..  +++++-++.+++||.+-|..|. .++.+++.+        .....|.+.++|+
T Consensus         9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~   81 (111)
T 2ct6_A            9 VIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDR   81 (111)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTE
T ss_pred             EEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCE
Confidence            477999888999997665  5556667789999999998763 234566654        5556888888874

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=88.34  E-value=0.57  Score=39.81  Aligned_cols=62  Identities=10%  Similarity=0.125  Sum_probs=43.6

Q ss_pred             ccCCeEEEEEec-----CCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311          503 IKEGKYIFLYGG-----DDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       503 ~~egk~I~lYfg-----ad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      +...+ |-||..     ..|++|+.--..|    ++.+++|+.+-|..|.. .+.+++..+...+|.+.++|+
T Consensus        12 i~~~~-vvvy~~g~~~~~~Cp~C~~ak~~L----~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~ifi~g~   79 (109)
T 1wik_A           12 TNKAS-VMLFMKGNKQEAKCGFSKQILEIL----NSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGD   79 (109)
T ss_dssp             HTTSS-EEEEESSTTTCCCSSTHHHHHHHH----HHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEECSSS
T ss_pred             hccCC-EEEEEecCCCCCCCchHHHHHHHH----HHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEEEECCE
Confidence            34555 557876     5699997655444    55589999999987632 345666667778899998886

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=88.04  E-value=0.54  Score=51.05  Aligned_cols=61  Identities=8%  Similarity=-0.061  Sum_probs=50.1

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCC---C-----CEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTAR---I-----PLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~---~-----~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+|.+.|+|.+. |++|+.+.|.+.+++++..   .     .+.++.|.-|... .+.+-+++..+|++++
T Consensus        41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~-~la~~y~V~~~PTlil  110 (470)
T 3qcp_A           41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEV-DLCRKYDINFVPRLFF  110 (470)
T ss_dssp             GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCH-HHHHHTTCCSSCEEEE
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCH-HHHHHcCCCccCeEEE
Confidence            457899999999 9999999999999997633   2     5888999888764 5666778999999875

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=87.87  E-value=0.45  Score=40.09  Aligned_cols=58  Identities=10%  Similarity=0.156  Sum_probs=41.2

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch-hhhhhcc-cccccccccc-CCC
Q 008311          508 YIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR-DKCGESW-QPLQLKSLVT-SGK  569 (570)
Q Consensus       508 ~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~-e~~~~~~-~~~~~~~~~~-~~~  569 (570)
                      .|-||+...||+|+.    +++.-++.|++||.+-|..|... +.+++.. +.-..|.+++ ||+
T Consensus         5 ~I~vYs~~~Cp~C~~----aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg~   65 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLR----LKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGS   65 (92)
T ss_dssp             CEEEEECTTCSSHHH----HHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEETTSC
T ss_pred             cEEEEcCCCCHhHHH----HHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCCE
Confidence            377999888999965    55555667999999999876543 3344432 4567888877 564

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=87.82  E-value=0.46  Score=43.59  Aligned_cols=57  Identities=11%  Similarity=-0.058  Sum_probs=41.9

Q ss_pred             CCeEEEEEe--cCCCchHHH-HHHHHHHHHhh-CCCCE-EEEEEecCCchhhhhhcccccccc
Q 008311          505 EGKYIFLYG--GDDVEWVRK-FTTAARSVANT-ARIPL-EMVYVGKSTKRDKCGESWQPLQLK  562 (570)
Q Consensus       505 egk~I~lYf--gad~~w~r~-FT~~l~~vy~~-~~~~f-Eiv~Vs~d~~~e~~~~~~~~~~~~  562 (570)
                      .||.+-|+|  ++.|++|+. =.+.+.+.|++ .+..+ +++.||.|++ +..++..+..+++
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~-~~~~~~~~~~~~~   91 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDS-FVMDAWGKAHGAD   91 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCH-HHHHHHHHHTTCT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCH-HHHHHHHHhcCCC
Confidence            787777766  666999999 88888888865 34568 9999998764 4556655555543

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=87.06  E-value=1.2  Score=43.34  Aligned_cols=48  Identities=17%  Similarity=0.072  Sum_probs=39.8

Q ss_pred             ccCCeEEEEEecC-C-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchh
Q 008311          503 IKEGKYIFLYGGD-D-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRD  550 (570)
Q Consensus       503 ~~egk~I~lYfga-d-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e  550 (570)
                      ...||++-|+|.+ . |++|+.=.+.+.++|++ .+..++++.||.|.++.
T Consensus        74 d~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~  124 (240)
T 3qpm_A           74 DYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFT  124 (240)
T ss_dssp             GGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHH
T ss_pred             HhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence            4579988888866 5 99999999999999976 45679999999987553

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=86.73  E-value=0.67  Score=38.13  Aligned_cols=61  Identities=11%  Similarity=0.121  Sum_probs=44.3

Q ss_pred             EEEEecCCCchHHHHHH--HHHHHHhhCCCCEEEEEEecCC-chhhhhhccc--cccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTT--AARSVANTARIPLEMVYVGKST-KRDKCGESWQ--PLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~--~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~--~~~~~~~~~~~~  569 (570)
                      |-||....|+.|+-|..  .++++-++.|++||.+-|..|. .++.+++..+  ....|.+.++|+
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~   69 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNH   69 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTE
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEECCE
Confidence            67898888999965544  3344446679999999998763 3445666666  668899988875

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=86.71  E-value=0.59  Score=39.33  Aligned_cols=60  Identities=10%  Similarity=0.120  Sum_probs=42.7

Q ss_pred             CCeEEEEEec-----CCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311          505 EGKYIFLYGG-----DDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       505 egk~I~lYfg-----ad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      .++ |-+|+.     ..|++|+.-.+.|.+.    +.+|+.+-|..+.. .+.+++..+...+|++.++|+
T Consensus        16 ~~~-vvvf~~g~~~~~~C~~C~~~~~~L~~~----~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~i~g~   81 (105)
T 2yan_A           16 KAS-VMLFMKGNKQEAKCGFSKQILEILNST----GVEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGE   81 (105)
T ss_dssp             SSS-EEEEESBCSSSBCTTHHHHHHHHHHHH----TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTE
T ss_pred             cCC-EEEEEecCCCCCCCccHHHHHHHHHHC----CCCeEEEECCCCHHHHHHHHHHHCCCCCCeEEECCE
Confidence            344 567775     5599998776666554    78899888876532 234566667888999998885

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=86.69  E-value=0.35  Score=45.14  Aligned_cols=37  Identities=14%  Similarity=-0.005  Sum_probs=29.6

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      +|++++.|++-|||+|+.+-  |.++-+++         ++.+..+|+
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~---------~v~~~~~p~   60 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA---------GTDIGKMHI   60 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH---------TSCCEEEEC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh---------CCeEEEEec
Confidence            78999999999999999998  77776655         245667776

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=85.93  E-value=0.58  Score=42.16  Aligned_cols=57  Identities=11%  Similarity=0.007  Sum_probs=41.9

Q ss_pred             cCCeEEEEEec--CCCchHH-HHHHHHHHHHhh-CCCCEE-EEEEecCCchhhhhhccccccc
Q 008311          504 KEGKYIFLYGG--DDVEWVR-KFTTAARSVANT-ARIPLE-MVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       504 ~egk~I~lYfg--ad~~w~r-~FT~~l~~vy~~-~~~~fE-iv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      ..||.+-|+|-  +.|++|+ .=.+.+.+.|++ .+..++ ++.||.|.+ +..++..+..++
T Consensus        33 ~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~-~~~~~~~~~~~~   94 (162)
T 1tp9_A           33 VAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDP-FVMKAWAKSYPE   94 (162)
T ss_dssp             HTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCH-HHHHHHHHTCTT
T ss_pred             hCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCH-HHHHHHHHhcCC
Confidence            57888888874  4599999 678889888865 235788 999999864 455555555444

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=85.76  E-value=0.46  Score=40.31  Aligned_cols=57  Identities=9%  Similarity=0.096  Sum_probs=41.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-----hhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-----RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-----~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|+...||+|+.-.+.|.    +.+++++.+-|..+.+     ++.+++..+...+|.+.++|+
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~----~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~   82 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFK----RLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGK   82 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHH----HTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTE
T ss_pred             EEEEECCCChhHHHHHHHHH----HcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECCE
Confidence            77788777999986665554    4589999999988532     223555557778999998885

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=85.21  E-value=1.7  Score=41.17  Aligned_cols=52  Identities=13%  Similarity=0.036  Sum_probs=30.0

Q ss_pred             cCCCccccccccCCeEEE-EEecCCCchHHHHHHHH---HHHHhhCC--CCEEEEEEe
Q 008311          493 DGIDPLVLDWIKEGKYIF-LYGGDDVEWVRKFTTAA---RSVANTAR--IPLEMVYVG  544 (570)
Q Consensus       493 d~~d~~i~~~~~egk~I~-lYfgad~~w~r~FT~~l---~~vy~~~~--~~fEiv~Vs  544 (570)
                      .|.|+.....-..++.+- -||+-.|++|+.|.|.+   .++.++.+  ..|.-+-|.
T Consensus       100 ~g~~y~~l~~p~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~  157 (197)
T 1un2_A          100 DGKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (197)
T ss_dssp             BTTTEEECSSCCTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             CCCCceEccCCCCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccC
Confidence            345554322112244444 44555599999999998   88876643  444444443

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=85.19  E-value=0.77  Score=43.66  Aligned_cols=38  Identities=11%  Similarity=0.060  Sum_probs=25.6

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEE
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYV  543 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~V  543 (570)
                      ++|.+-+.|++. ||+|++|-+.+.++ .+.+..+..+.+
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~-~~~~v~v~~~~~  123 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEY-NDLGITVRYLAF  123 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHH-HHTTEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHH-HhCCcEEEEEEC
Confidence            566655556555 99999999999995 444544444433

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=84.93  E-value=0.52  Score=48.03  Aligned_cols=55  Identities=5%  Similarity=-0.032  Sum_probs=41.0

Q ss_pred             EEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCc---hhhhhhccccccccccccCCC
Q 008311          511 LYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTK---RDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       511 lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~---~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      +.|+++ |++||++.|.+.+++++.    +.+-+.+++.   +.++.+.+++..+||+.++|+
T Consensus       202 V~F~A~WC~~Ck~l~p~le~lA~~l----~~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i~G~  260 (291)
T 3kp9_A          202 TMYGAYWCPHCQDQKELFGAAFDQV----PYVECSPNGPGTPQAQECTEAGITSYPTWIINGR  260 (291)
T ss_dssp             EEEECTTCHHHHHHHHHHGGGGGGS----CEEESCSSCSSSCCCHHHHTTTCCSTTEEEETTE
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHc----CEEEEeecCchhhHHHHHHHcCCcccCeEEECCE
Confidence            456677 999999999999887553    3444444332   456777789999999999885

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=84.56  E-value=1.4  Score=42.47  Aligned_cols=55  Identities=7%  Similarity=-0.032  Sum_probs=41.8

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCC-------chhhhhhccc
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKST-------KRDKCGESWQ  557 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~-------~~e~~~~~~~  557 (570)
                      ....||.+-|+|.+. |++|++ .+.|.++|++ .+..|+++-|+.|.       +.+++++.++
T Consensus        52 sd~~GKvvll~FwAt~C~~c~e-~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~  115 (215)
T 2i3y_A           52 KQYVGKHILFVNVATYCGLTAQ-YPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLK  115 (215)
T ss_dssp             GGGTTSEEEEEEECSSSGGGGG-HHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHH
T ss_pred             HHhCCCEEEEEEeCCCCCChHh-HHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHHH
Confidence            356899999999988 999994 6789999876 34569999999652       3455555444

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=84.29  E-value=0.74  Score=43.22  Aligned_cols=41  Identities=5%  Similarity=-0.058  Sum_probs=30.8

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--H---HHHHHHHhhhhhccCCCeEEEEEec
Q 008311          344 LRRKNVLLLISDLDISQEELSI--L---EQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L---~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      ..+|++++.|+.-|||+|+.+-  |   .++-+++.       +++.++++++
T Consensus        19 ~~~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~-------~~v~~~~~~~   64 (191)
T 3l9s_A           19 VAGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLP-------EGTKMTKYHV   64 (191)
T ss_dssp             CCSSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSC-------TTCCEEEEEC
T ss_pred             CCCCCeEEEEECCCChhHHHhChhccchHHHHHhCC-------CCcEEEEEec
Confidence            3568999999999999999998  4   35655552       3566777775

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=83.89  E-value=0.8  Score=43.58  Aligned_cols=37  Identities=11%  Similarity=0.085  Sum_probs=27.0

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEE
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMV  541 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv  541 (570)
                      ..||.+-+.|.+. ||+|++|-+.+.++.+. +..+..+
T Consensus        84 ~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~-~v~v~~~  121 (216)
T 1eej_A           84 PQEKHVITVFTDITCGYCHKLHEQMADYNAL-GITVRYL  121 (216)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHTTHHHHHHT-TEEEEEE
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHhC-CcEEEEE
Confidence            3577777777766 99999999999998653 4444433

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=83.84  E-value=2.1  Score=39.37  Aligned_cols=43  Identities=16%  Similarity=-0.036  Sum_probs=33.4

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecC
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKS  546 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d  546 (570)
                      ..|+.+.+.|.+. ||+|+.|.+.+.++.++.+..++++++.-+
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            3577666666666 999999999999998776557777777765

>4hoj_A REGF protein; GST, glutathione S-transferase, enzyme function initiative, structural genomics, transferase; HET: GSH; 1.40A {Neisseria gonorrhoeae}

Probab=82.86  E-value=1.2  Score=41.43  Aligned_cols=57  Identities=14%  Similarity=0.107  Sum_probs=46.3

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      +=||++..||+||+=--.|    .+.|+++|.+.|.-.+..+.+.+..-.=.+|.|+.+|.
T Consensus         4 m~LY~~~~sP~~~rvr~~L----~e~gi~~e~~~v~~~~~~~~~~~~nP~g~vPvL~~~~~   60 (210)
T 4hoj_A            4 MTLYSGITCPFSHRCRFVL----YEKGMDFEIKDIDIYNKPEDLAVMNPYNQVPVLVERDL   60 (210)
T ss_dssp             CEEEECTTCHHHHHHHHHH----HHHTCCCEEEECCTTSCCHHHHHHCTTCCSCEEEETTE
T ss_pred             EEEecCCCChHHHHHHHHH----HHcCCCCEEEEeCCCCCCHHHHHHCCCCCCcEEEECCE
Confidence            4589998999998643333    45699999999998888888988887888999998875

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=82.70  E-value=1.2  Score=38.08  Aligned_cols=59  Identities=2%  Similarity=0.046  Sum_probs=42.0

Q ss_pred             eEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch----hhhhhccccccccccccCCC
Q 008311          507 KYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR----DKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       507 k~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~----e~~~~~~~~~~~~~~~~~~~  569 (570)
                      .-|-+|....||+|+.--..|    ++.|.+|+.+-|..+...    +.+++..+.-..|.+.++|+
T Consensus        17 ~~v~vy~~~~Cp~C~~ak~~L----~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi~g~   79 (114)
T 3h8q_A           17 SRVVIFSKSYCPHSTRVKELF----SSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKV   79 (114)
T ss_dssp             CSEEEEECTTCHHHHHHHHHH----HHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEETTE
T ss_pred             CCEEEEEcCCCCcHHHHHHHH----HHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEECCE
Confidence            346678777799997655555    445899999999875443    33445556778888888885

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=80.83  E-value=0.48  Score=42.62  Aligned_cols=54  Identities=9%  Similarity=-0.046  Sum_probs=34.6

Q ss_pred             ccCCeEEEEEe--cCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhccc
Q 008311          503 IKEGKYIFLYG--GDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQ  557 (570)
Q Consensus       503 ~~egk~I~lYf--gad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~  557 (570)
                      ...||.+-|+|  +..|++|+.=.+.+.+.|++ .+..++++.||.|.++ ..++..+
T Consensus        27 d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~-~~~~~~~   83 (157)
T 4g2e_A           27 ALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPF-SNKAFKE   83 (157)
T ss_dssp             GGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHH-HHHHHHH
T ss_pred             HHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchh-HHHHHHH
Confidence            46789888877  44499999988888888865 5678999999988654 3344333

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=80.80  E-value=14  Score=34.86  Aligned_cols=151  Identities=9%  Similarity=0.065  Sum_probs=79.4

Q ss_pred             CChhhHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCC-cEEccccchhHhhhcCCCCCCCchh
Q 008311          398 WDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQG-RVVSPNALHMMWIWGSNAFPFTSLR  476 (570)
Q Consensus       398 w~D~~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqG-kVv~~na~~~I~~~G~~aFPFt~~~  476 (570)
                      |.......|.+....++  .+.|-...+    ..+.+.|++++ |++++..+.. +....++..    -|    +++...
T Consensus        38 ~~~~~~~~f~~~A~~l~--~~~F~~t~~----~~v~~~~~v~~-p~i~lfk~~~~~~~~~~~~~----~g----~~~~~~  102 (227)
T 4f9z_D           38 LEIPAVPILHSMVQKFP--GVSFGISTD----SEVLTHYNITG-NTICLFRLVDNEQLNLEDED----IE----SIDATK  102 (227)
T ss_dssp             SCSTHHHHHHHHTTTCT--TSEEEEECC----HHHHHHTTCCS-SEEEEEETTTTEEEEECHHH----HH----TCCHHH
T ss_pred             CCchhHHHHHHHHHhCC--CceEEEECC----HHHHHHcCCCC-CeEEEEEecCcccccccccc----cC----CCCHHH
Confidence            55666788887766665  233321112    34677899998 9999887532 222111100    01    334433


Q ss_pred             HHHHhhhcCccccccccCCCcccccc-ccCC-eEEEEEecC-CCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhh
Q 008311          477 EEALWKEETWRLELLVDGIDPLVLDW-IKEG-KYIFLYGGD-DVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKC  552 (570)
Q Consensus       477 ~e~L~~e~~w~~~ll~d~~d~~i~~~-~~eg-k~I~lYfga-d~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~  552 (570)
                      ...-.++...  .++. .+++.-... ...+ +...++|-+ .|+-|+++.+.+++++++.+.++-.+++..++. -.++
T Consensus       103 l~~fi~~~~~--plv~-e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~  179 (227)
T 4f9z_D          103 LSRFIEINSL--HMVT-EYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKV  179 (227)
T ss_dssp             HHHHHHHHCC--CSEE-ECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHH
T ss_pred             HHHHHHHhCC--Ccee-ecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHH
Confidence            3333333321  1222 133221111 1223 344445533 477888999999999987666666666666542 2234


Q ss_pred             hhccccc--ccccccc
Q 008311          553 GESWQPL--QLKSLVT  566 (570)
Q Consensus       553 ~~~~~~~--~~~~~~~  566 (570)
                      -++++.-  +.|++++
T Consensus       180 l~~fgl~~~~~P~~~i  195 (227)
T 4f9z_D          180 ISFFKLKESQLPALAI  195 (227)
T ss_dssp             HHHTTCCGGGCSEEEE
T ss_pred             HHHcCCCcccCCEEEE
Confidence            4555554  6677664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	570
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.94
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.92
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.89
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.76
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.75
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.75
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.74
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.7
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.69
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.68
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.68
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.68
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.54
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.5
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.46
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.45
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.43
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.43
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.42
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.36
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.34
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.33
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.33
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.32
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.27
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.25
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.23
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.23
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.18
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.17
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.17
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.12
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.1
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.08
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.03
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.0
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	98.98
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.84
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.83
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.82
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.8
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	98.78
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.75
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.74
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.74
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.71
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	98.71
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	98.71
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.71
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.7
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.7
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	98.64
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.63
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	98.61
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	98.57
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.55
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	98.53
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	98.45
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	98.43
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	98.33
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	98.33
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	98.3
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	98.24
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.16
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	98.13
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	97.95
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	97.92
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	97.85
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	97.54
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	97.46
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.34
d1wjka_	100	Thioredoxin-like structure containing protein C330	97.28
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	97.24
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	96.94
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	96.92
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	96.89
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	96.88
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	96.84
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	96.84
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	96.82
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	96.78
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	96.69
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	96.51
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	96.44
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	96.3
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	96.18
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	96.15
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	96.11
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	96.06
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	95.91
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	95.9
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	95.83
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	95.82
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	95.77
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	95.72
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	95.43
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	95.39
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	95.35
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	95.27
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	95.23
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	95.14
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	95.08
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	94.93
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	94.87
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	94.72
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	94.7
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	94.63
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	94.45
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	94.18
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	94.18
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	94.15
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	93.83
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	93.6
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	93.46
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	93.38
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	93.3
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	93.22
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	93.11
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	93.04
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	93.01
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	92.55
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	91.64
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	91.43
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	90.46
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	89.98
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	89.47
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	88.9
d1wjka_	100	Thioredoxin-like structure containing protein C330	87.8
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	84.85
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	82.03
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	81.86
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	80.57

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.94  E-value=1.1e-26  Score=211.64  Aligned_cols=127  Identities=20%  Similarity=0.387  Sum_probs=110.1

Q ss_pred             cccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          330 LVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       330 l~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      +++| +|.+|++++++||+|+|+|||+||+||+.++  |.++|+++++     +.+|+||+|+.        |++.+.++
T Consensus        13 ~l~~-~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~-----~~~~~vi~vs~--------D~~~~~~~   78 (144)
T d1i5ga_          13 VLKG-AAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAE-----KKNFEVMLISW--------DESAEDFK   78 (144)
T ss_dssp             EEET-TEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEEC--------CSSHHHHH
T ss_pred             hccC-CCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHh-----ccCcEEEEEec--------cccHHHHH
Confidence            4555 5889999999999999999999999999999  9999999974     35899999995        55667888


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCC-CcEEccccchhHhhhc-CCCCCCC
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQ-GRVVSPNALHMMWIWG-SNAFPFT  473 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpq-GkVv~~na~~~I~~~G-~~aFPFt  473 (570)
                      ++..+++|+.+++   .|..+...+.+.|+++++|++++||++ |+|++.+|+.++...+ .+.|||.
T Consensus        79 ~~~~~~~~~~~~~---~d~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v~~d~~~~~fpw~  143 (144)
T d1i5ga_          79 DYYAKMPWLALPF---EDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWP  143 (144)
T ss_dssp             HHHTTCSSEECCT---TCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred             HHHHhCCCCceee---EChHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHHhhCcccccCCCC
Confidence            8899999988776   355556678999999999999999996 9999999999998755 6789995

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.92  E-value=9.5e-25  Score=197.68  Aligned_cols=124  Identities=20%  Similarity=0.355  Sum_probs=105.3

Q ss_pred             CCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHc
Q 008311          334 STKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQS  411 (570)
Q Consensus       334 ~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~  411 (570)
                      .+|.+|++++|+||+|+|+|||+||+||+.++  |+++|++++.     +.+++||+|++        |.+.+.+.++..
T Consensus        16 ~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~-----~~~~~vi~is~--------d~~~~~~~~~~~   82 (144)
T d1o73a_          16 SKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHV-----AKNFEVVLISW--------DENESDFHDYYG   82 (144)
T ss_dssp             CTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEEC--------CSSHHHHHHHHT
T ss_pred             cCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhh-----ccCeEEEEEec--------chhHHHHHHHHH
Confidence            45667999999999999999999999999999  9999999963     45899999995        445667777788


Q ss_pred             CCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCC-CcEEccccchhHhhhc-CCCCCCC
Q 008311          412 SMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQ-GRVVSPNALHMMWIWG-SNAFPFT  473 (570)
Q Consensus       412 ~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpq-GkVv~~na~~~I~~~G-~~aFPFt  473 (570)
                      +++|+.++|.   +......+.+.|+++++|+++|||++ |+|+.++++..+.+.. ...|||-
T Consensus        83 ~~~~~~~~~~---~~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~~~~~~d~~~~~fpw~  143 (144)
T d1o73a_          83 KMPWLALPFD---QRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWP  143 (144)
T ss_dssp             TCSSEECCTT---CHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred             hccccceeee---ccchHHHHHHHcCCCcCCEEEEEECCCCEEEeecchhhhhhCcccccCCCC
Confidence            8999888873   22344578899999999999999998 9999999998887755 6889994

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.89  E-value=2.5e-23  Score=186.75  Aligned_cols=130  Identities=19%  Similarity=0.283  Sum_probs=109.8

Q ss_pred             cccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          330 LVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       330 l~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      .+...+|++|++++|+||+|+|+|||+||+||+.++  |.++|++++.     ..++++|+|+.        |++.+.+.
T Consensus        10 ~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~-----~~~~~~v~is~--------d~~~~~~~   76 (144)
T d1o8xa_          10 EKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHE-----SKNFEVVFCTW--------DEEEDGFA   76 (144)
T ss_dssp             CEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEEC--------CCSHHHHH
T ss_pred             EeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhccc-----ccccccccccc--------cccHHHHH
Confidence            345667899999999999999999999999999999  9999999963     35799999995        44567777


Q ss_pred             HHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCC-CcEEccccchhHhhhc-CCCCCCCch
Q 008311          408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQ-GRVVSPNALHMMWIWG-SNAFPFTSL  475 (570)
Q Consensus       408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpq-GkVv~~na~~~I~~~G-~~aFPFt~~  475 (570)
                      .+...++|+.+++.   .......+.+.|+++++|+++|||++ |+|++.+++..+...+ .+.|||..+
T Consensus        77 ~~~~~~~~~~~~~~---~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~~~~d~~~~~~~w~~~  143 (144)
T d1o8xa_          77 GYFAKMPWLAVPFA---QSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKDA  143 (144)
T ss_dssp             HHHTTCSSEECCGG---GHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCCC
T ss_pred             HHHhhccccceeee---cccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhhhhhCcccccCCCCCC
Confidence            77788999988873   22345679999999999999999998 8999999999887644 688999764

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.76  E-value=3.7e-19  Score=159.01  Aligned_cols=115  Identities=10%  Similarity=0.114  Sum_probs=89.1

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ..+.+.+|++++++.++||+|+|+|||+|||||+.++  |.++|++++.      .+++++.|+......++.   ...+
T Consensus         6 ~~l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~------~~~~~i~v~~~~~~~~~~---~~~~   76 (143)
T d2fy6a1           6 STLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKF------SSANLITVASPGFLHEKK---DGDF   76 (143)
T ss_dssp             HTCEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGG------TTSEEEEEECTTSTTCCC---TTHH
T ss_pred             ceeECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhcc------CCcEEEEEeeeecccccc---hhhh
Confidence            3577889999999999999999999999999999999  9999999863      479999998643222222   2344


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .++.....++.  ||.+.|.  ...+.+.|+++++|++++||++|+|+..
T Consensus        77 ~~~~~~~~~~~--~~~~~D~--~~~~~~~~~v~~~P~~~liD~~G~i~~~  122 (143)
T d2fy6a1          77 QKWYAGLNYPK--LPVVTDN--GGTIAQSLNISVYPSWALIGKDGDVQRI  122 (143)
T ss_dssp             HHHHTTSCCTT--SCEEECT--TCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred             hhhhhhcCCcc--ccccccc--chHHHHHcCCCccCEEEEECCCCEEEEE
Confidence            44444444433  4445565  3568899999999999999999999875

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=1.2e-18  Score=155.17  Aligned_cols=107  Identities=14%  Similarity=0.057  Sum_probs=82.5

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ...+...+|+++++++++||+|+|+|||+|||+|+.++  |.++|++.        +++.+|+|+..+     +....+.
T Consensus         6 ~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~--------~~v~~v~v~~~~-----~~~~~~~   72 (134)
T d1lu4a_           6 QFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAAN--------PAVTFVGIATRA-----DVGAMQS   72 (134)
T ss_dssp             CCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC--------TTSEEEEEECSS-----CHHHHHH
T ss_pred             cceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhh--------cccccccccccc-----chhhhhh
Confidence            34566889999999999999999999999999999999  99998764        268899998521     2233344


Q ss_pred             HHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                      |.+. ..     ++||.+.|..  ..+.+.|++.++|++++||++|+++.
T Consensus        73 ~~~~-~~-----~~~p~~~d~~--~~~~~~~~v~~~P~~~lid~~G~i~~  114 (134)
T d1lu4a_          73 FVSK-YN-----LNFTNLNDAD--GVIWARYNVPWQPAFVFYRADGTSTF  114 (134)
T ss_dssp             HHHH-HT-----CCSEEEECTT--SHHHHHTTCCSSSEEEEECTTSCEEE
T ss_pred             hhhh-hc-----cccceeeCch--HHHHHHcCCCcCCEEEEEeCCCeEEE
Confidence            4332 12     3455555643  46888999999999999999999864

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=1.4e-18  Score=153.79  Aligned_cols=106  Identities=16%  Similarity=0.114  Sum_probs=80.6

Q ss_pred             ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH
Q 008311          331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET  408 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~  408 (570)
                      +.+.+|+.+++++++||+|+|+|||+|||||+.++  |.++|++++        +..+|+|+..|     ...+.+.|..
T Consensus        10 ~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~--------~~~~v~v~~~d-----~~~~~~~~~~   76 (134)
T d1zzoa1          10 AKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--------EVTFVGVAGLD-----QVPAMQEFVN   76 (134)
T ss_dssp             EEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEECSS-----CHHHHHHHHH
T ss_pred             EEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhc--------ccccccccccc-----cchhHHHHHH
Confidence            56789999999999999999999999999999999  999998874        36678887522     2233344433


Q ss_pred             HHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      . .+.++    ||.+.|..  ..+.+.|++.++|++++||++|+|...
T Consensus        77 ~-~~~~~----~~~l~D~~--~~~~~~~~v~~~P~~~iiD~~G~i~~~  117 (134)
T d1zzoa1          77 K-YPVKT----FTQLADTD--GSVWANFGVTQQPAYAFVDPHGNVDVV  117 (134)
T ss_dssp             H-TTCTT----SEEEECTT--CHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             h-cCCcc----eeEEeecc--chHHHhcCCCccCeEEEECCCCeEEEE
Confidence            2 23333    34444653  368899999999999999999998654

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=1.5e-18  Score=164.24  Aligned_cols=120  Identities=13%  Similarity=0.113  Sum_probs=88.6

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ..+.+.+|+.+++++++||+|+|+|||+|||||+.++  |.++|+++++       ++.+|+|+..|.... .+...+..
T Consensus        15 F~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~-------~v~~v~i~snd~~~~-~~~~~e~~   86 (187)
T d2cvba1          15 AELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRG-------KVAFVGINANDYEKY-PEDAPEKM   86 (187)
T ss_dssp             CEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT-------TEEEEEEECCCTTTC-GGGSHHHH
T ss_pred             cEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccc-------cceeeeeeccccccc-cccchHHH
Confidence            3456889999999999999999999999999999999  9999999962       588888875332111 12222333


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchh
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHM  461 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~  461 (570)
                      +++....   .++||.+.|.  ...+.+.|++.++|+++|||++|+|+.+-+++.
T Consensus        87 ~~~~~~~---~~~~p~l~D~--~~~~~~~~~v~~~P~~~liD~~G~i~y~G~idd  136 (187)
T d2cvba1          87 AAFAEEH---GIFFPYLLDE--TQEVAKAYRALRTPEVFLFDERRLLRYHGRVND  136 (187)
T ss_dssp             HHHHHHH---TCCSCEEECS--SSHHHHHTTCCEESEEEEECTTCBEEEEECSSS
T ss_pred             HHHHHHh---CCcceeeech--hhhhcccccccceeeEEEEcCCCeEEEEeeecC
Confidence            3332221   2345555675  346889999999999999999999998755543

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.70  E-value=2.7e-17  Score=147.51  Aligned_cols=115  Identities=14%  Similarity=0.205  Sum_probs=85.1

Q ss_pred             CCCcccCC----CCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCCh
Q 008311          327 LQPLVDGS----TKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDD  400 (570)
Q Consensus       327 ~~pl~~g~----~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D  400 (570)
                      ++|-|.+.    +|+.++.+.++||+|+|+|||+|||||+.++  |.++|+++++       ++++|+|++.+..   .+
T Consensus         6 ~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~-------~~~~i~v~~~~~~---~~   75 (143)
T d2b5xa1           6 PMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD-------QLNVVAVHMPRSE---DD   75 (143)
T ss_dssp             BCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-------TSEEEEEECCCST---TT
T ss_pred             cCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc-------cccceeEEeeccc---cc
Confidence            45666532    6888888889999999999999999999999  9999999962       5889999863321   12


Q ss_pred             hhHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          401 PTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       401 ~~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .+...++++.++.   .++||.+.|.  ...+.+.|++.++|++++||++|+|+..
T Consensus        76 ~~~~~~~~~~~~~---~~~~p~~~D~--~~~~~~~~~v~~~P~~~~id~~G~i~~~  126 (143)
T d2b5xa1          76 LDPGKIKETAAEH---DITQPIFVDS--DHALTDAFENEYVPAYYVFDKTGQLRHF  126 (143)
T ss_dssp             SSHHHHHHHHHHT---TCCSCEEECS--SCHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred             cchhhhhhHHHhh---ccCccccccC--ccchHHHcCCCcCCEEEEECCCCEEEEE
Confidence            2223333333322   2345555665  3468899999999999999999999875

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.69  E-value=5.7e-17  Score=150.27  Aligned_cols=115  Identities=18%  Similarity=0.242  Sum_probs=85.8

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ..+.+.+|+.+++++++||+|+|+||++||++|+.++  |+++|++++      +.++.||+|++ |..   +.+..+.|
T Consensus        39 f~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~------~~~~~vv~vs~-d~~---~~~~~~~~  108 (176)
T d1jfua_          39 LAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLS------GPNFEVVAINI-DTR---DPEKPKTF  108 (176)
T ss_dssp             CEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHC------BTTEEEEEEEC-CCS---CTTHHHHH
T ss_pred             eEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhcccccc------ccccccccccc-ccc---chhhhhhh
Confidence            4577899999999999999999999999999999999  999999986      35799999997 311   12334455


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .+. ...+|+.+....  +....+.+...|++.++|+++|||++|+|+.+
T Consensus       109 ~~~-~~~~~~~~~~d~--~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~  155 (176)
T d1jfua_         109 LKE-ANLTRLGYFNDQ--KAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT  155 (176)
T ss_dssp             HHH-TTCCTTCCEECT--TCHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred             Hhh-hCCcceeeeecc--hhHHHHHHhhhccCCCCCeEEEEcCCCEEEEE
Confidence            432 334443332211  22334556777899999999999999999875

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.9e-17  Score=145.99  Aligned_cols=100  Identities=17%  Similarity=0.107  Sum_probs=72.7

Q ss_pred             CCCeeecccc-CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHc
Q 008311          335 TKRRVNIEVL-RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQS  411 (570)
Q Consensus       335 ~G~~Vsls~L-kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~  411 (570)
                      +|+.++.+++ +||+|+|+|||+||+||+.++  |.++++          .++.|++++..+     .......+.. ..
T Consensus         8 ~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----------~~~~vi~i~~~~-----~~~~~~~~~~-~~   71 (136)
T d1z5ye1           8 PGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----------QGIRVVGMNYKD-----DRQKAISWLK-EL   71 (136)
T ss_dssp             TTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----------TTCCEEEEEESC-----CHHHHHHHHH-HH
T ss_pred             CCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----------hhhhhccccccc-----chhhhHHHHH-Hc
Confidence            5889999998 899999999999999999999  877643          258899998621     2222233322 12


Q ss_pred             CCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          412 SMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       412 ~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      ..+|+.+.+    |.  ...+.+.|++.++|+++|||++|+|+.+
T Consensus        72 ~~~~~~~~~----d~--~~~~~~~~~v~~~P~~~liD~~G~i~~~  110 (136)
T d1z5ye1          72 GNPYALSLF----DG--DGMLGLDLGVYGAPETFLIDGNGIIRYR  110 (136)
T ss_dssp             CCCCSEEEE----ES--SCHHHHHHTCCSBSEEEEECTTSCEEEE
T ss_pred             CCccceeec----cc--chhHHHhcccCCcceEEEEcCCCEEEEE
Confidence            333332222    33  2357888999999999999999999965

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.68  E-value=6.1e-17  Score=143.80  Aligned_cols=111  Identities=17%  Similarity=0.304  Sum_probs=85.8

Q ss_pred             CCCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          327 LQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      |...+.+.+|+++++++++||+++|+|||+|||+|..++  |.++++++.+      .++.||+|++.+     +....+
T Consensus         6 P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~------~~~~~v~i~~~~-----~~~~~~   74 (137)
T d1st9a_           6 PNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS------QGVEIVAVNVGE-----SKIAVH   74 (137)
T ss_dssp             CCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG------GTEEEEEEEESC-----CHHHHH
T ss_pred             CCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccc------cccccccccccc-----hhhhHH
Confidence            344566789999999999999999999999999999999  9999999963      479999999621     222333


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .|.+ ..+.+     ||.+.|..  ..+.+.|++.++|+++|+|++|+++.+
T Consensus        75 ~~~~-~~~~~-----~~~~~d~~--~~~~~~~~v~~~P~~~liD~~G~i~~~  118 (137)
T d1st9a_          75 NFMK-SYGVN-----FPVVLDTD--RQVLDAYDVSPLPTTFLINPEGKVVKV  118 (137)
T ss_dssp             HHHH-HTTCC-----SCEEEETT--SHHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred             HHHH-HcCCC-----cccccccc--chhhhhhhccccceEEEECCCCEEEEE
Confidence            3332 12333     45455542  468889999999999999999999875

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.68  E-value=2.4e-17  Score=147.85  Aligned_cols=106  Identities=15%  Similarity=0.141  Sum_probs=77.8

Q ss_pred             ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH
Q 008311          331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET  408 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~  408 (570)
                      +++.++..++++++|||+|+|+|||+||+||+.++  |.+++++         .++++++|+..+     ...+.+.|..
T Consensus        16 ~~~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~---------~~~~~~~i~~~~-----~~~~~~~~~~   81 (144)
T d1knga_          16 ADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD---------KRFQLVGINYKD-----AADNARRFLG   81 (144)
T ss_dssp             ETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC---------TTSEEEEEEESC-----CHHHHHHHHH
T ss_pred             ccCCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhc---------cCceeEEEEeee-----chHHHHHHHH
Confidence            34556678999999999999999999999999998  7766543         258899998622     3334444443


Q ss_pred             HHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccc
Q 008311          409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPN  457 (570)
Q Consensus       409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~n  457 (570)
                      . ...+++.+.    .|.  ...+.+.|++.++|++++||++|+|+.+.
T Consensus        82 ~-~~~~~~~~~----~d~--~~~~~~~~~v~~~P~~~liD~~G~i~~~~  123 (144)
T d1knga_          82 R-YGNPFGRVG----VDA--NGRASIEWGVYGVPETFVVGREGTIVYKL  123 (144)
T ss_dssp             H-HCCCCSEEE----EET--TSHHHHHTTCCSSCEEEEECTTSBEEEEE
T ss_pred             H-cCCcccccc----ccc--cchhhhhcCccccceEEEEcCCCeEEEEE
Confidence            2 234443332    243  24588999999999999999999999764

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.54  E-value=2.7e-15  Score=138.20  Aligned_cols=117  Identities=15%  Similarity=0.139  Sum_probs=88.9

Q ss_pred             CCCCccc------CCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCC
Q 008311          326 DLQPLVD------GSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFI  396 (570)
Q Consensus       326 ~~~pl~~------g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~  396 (570)
                      +++|.|.      +.+|++|++++++||+|+|+|| ++|||+|..++  |.+.|+++++      .+++|++||. |   
T Consensus         7 ~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~------~~~~v~~is~-d---   76 (167)
T d1e2ya_           7 HPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAE------INTEVISCSC-D---   76 (167)
T ss_dssp             SBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHT------TTEEEEEEES-S---
T ss_pred             CCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhc------CceEEEeecC-C---
Confidence            3567664      6689999999999999999998 99999999999  9999999973      4799999996 2   


Q ss_pred             CCChhhHHHHHH-HHcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311          397 HWDDPTQKKFET-LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       397 ~w~D~~~~~F~~-~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~  456 (570)
                        +..+..+|.. .....+-..++||.+.|.  .+.+.+.|++.      ..|+++|||++|+|...
T Consensus        77 --~~~~~~~~~~~~~~~~~~~~~~~~~l~d~--~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~  139 (167)
T d1e2ya_          77 --SEYSHLQWTSVDRKKGGLGPMAIPMLADK--TKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQI  139 (167)
T ss_dssp             --CHHHHHHHHHSCGGGTCCCCCSSCEEECT--TCHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             --cHHhHHHHHhhHHHhcccccccccccccc--hhHHHHHcCCCcccCCCceeEEEEECCCCEEEEE
Confidence              2344455543 222333345778877775  35677788872      35789999999999654

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.50  E-value=1.4e-14  Score=134.15  Aligned_cols=107  Identities=13%  Similarity=0.097  Sum_probs=82.4

Q ss_pred             CCCCCeeeccccCCCEEEEEEecC-CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH-
Q 008311          333 GSTKRRVNIEVLRRKNVLLLISDL-DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET-  408 (570)
Q Consensus       333 g~~G~~Vsls~LkGKvVlL~FwAs-WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~-  408 (570)
                      |.++++|++++++||+|+|+||+. |||+|..++  |.+.|+++++      .+++||+||. |     +....+.|.+ 
T Consensus        18 g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~------~g~~vv~IS~-D-----~~~~~~~~~~~   85 (166)
T d1we0a1          18 GKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKK------LGVEVYSVST-D-----THFVHKAWHEN   85 (166)
T ss_dssp             SSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHH------TTEEEEEEES-S-----CHHHHHHHHHS
T ss_pred             CcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcc------cceEEEeccc-c-----cHHHHHHHhhh
Confidence            567789999999999999999977 999999999  9999999974      4799999996 2     2333345543 


Q ss_pred             HHcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311          409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~  456 (570)
                      +...   ..++||.+.|..  +.+.+.||+.      ..|+++||||+|+|...
T Consensus        86 ~~~~---~~~~fpll~D~~--~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~  134 (166)
T d1we0a1          86 SPAV---GSIEYIMIGDPS--QTISRQFDVLNEETGLADRGTFIIDPDGVIQAI  134 (166)
T ss_dssp             CHHH---HTCCSEEEECTT--CHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             hhhh---cccccccccCcc--cHHHHHhCCCccccCcccceEEEECCCCcEEEE
Confidence            2111   134577767753  5688999874      46789999999999664

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.46  E-value=3.7e-14  Score=134.94  Aligned_cols=116  Identities=14%  Similarity=0.111  Sum_probs=91.4

Q ss_pred             CCCccc------CCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCC
Q 008311          327 LQPLVD------GSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIH  397 (570)
Q Consensus       327 ~~pl~~------g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~  397 (570)
                      ++|.|.      +.+|+++++++++||+|+|+|| +.||++|..++  +.+.|+++++      .+.+|++||. |    
T Consensus         8 PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~------~g~~VlgIS~-D----   76 (194)
T d1uula_           8 PAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD------IGCEVLACSM-D----   76 (194)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHT------TTEEEEEEES-S----
T ss_pred             CCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhcc------CceEEEEEec-C----
Confidence            566665      5688999999999999999999 99999999999  9999999973      4899999996 3    


Q ss_pred             CChhhHHHHHH-HHcCCCceeeccccccChHHHHHHHHhCCC------CCCceEEEECCCCcEEcc
Q 008311          398 WDDPTQKKFET-LQSSMPWYTVYHPTLIDRAVIRYVKDVWHF------KNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       398 w~D~~~~~F~~-~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V------~~IPtlVVLDpqGkVv~~  456 (570)
                       +....+.|.+ ......-..++||.+.|.  .+.+.+.||+      ...|.++|||++|+|...
T Consensus        77 -s~~s~~~~~~~~~~~~~~~~l~fpllsD~--~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~  139 (194)
T d1uula_          77 -SEYSHLAWTSIERKRGGLGQMNIPILADK--TKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQI  139 (194)
T ss_dssp             -CHHHHHHHHHSCGGGTCCCSCSSCEEECT--TCHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             -chhhhhhhhhhhhhhccccCCCcceeeCC--cchHHHHcCCeeccCCceEEEEEEECCCCeEEEE
Confidence             3345566654 223333346778888886  4578899998      346889999999999764

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.45  E-value=6e-14  Score=128.67  Aligned_cols=112  Identities=13%  Similarity=0.095  Sum_probs=86.8

Q ss_pred             ccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          331 VDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       331 ~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      +.|.+|+.|++++++||+|+|+|| +.|||+|..++  +.+.|+++++      .+.+|++||. |     +....++|.
T Consensus        11 ~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~------~~~~vigIS~-d-----~~~~~~~~~   78 (158)
T d1zyea1          11 VVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD------VNCEVVAVSV-D-----SHFSHLAWI   78 (158)
T ss_dssp             ECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH------TTEEEEEEES-S-----CHHHHHHHH
T ss_pred             eeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhc------CCceEEeccC-c-----CHHHHHHHH
Confidence            346788999999999999999999 99999999999  9999999973      4799999996 3     345556665


Q ss_pred             HH-HcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311          408 TL-QSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       408 ~~-~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~  456 (570)
                      +- .....-..++||.+.|..  ..+.+.||+.      .+|+++|||++|+|...
T Consensus        79 ~~~~~~~~~~~~~f~llsD~~--~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~  132 (158)
T d1zyea1          79 NTPRKNGGLGHMNIALLSDLT--KQISRDYGVLLEGPGLALRGLFIIDPNGVIKHL  132 (158)
T ss_dssp             TSCGGGTCCCSCSSEEEECTT--SHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             hhhHhhccccccccccccccc--cHHHHHHHhccccCCccccEEEEECCCCEEEEE
Confidence            42 111122356777777764  4688889875      46789999999999764

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.43  E-value=1.1e-13  Score=125.19  Aligned_cols=109  Identities=17%  Similarity=0.207  Sum_probs=81.9

Q ss_pred             CCcccCCCCCeeecccc--CCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhh
Q 008311          328 QPLVDGSTKRRVNIEVL--RRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPT  402 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~L--kGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~  402 (570)
                      ...+.+.+|+.++++++  +||+|+|+|| ++|||+|..++  |.+.|++++      +.+++||.|+. |     +.+.
T Consensus        10 dF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~------~~~~~vv~is~-d-----~~~~   77 (160)
T d2cx4a1          10 DFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLE------KANAEVLAISV-D-----SPWC   77 (160)
T ss_dssp             CCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTS------TTCCEEEEEES-S-----CHHH
T ss_pred             CeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhccccccc------ccccccccccc-c-----chhh
Confidence            34455889999999997  8999999888 99999999999  999999886      35789999995 2     2444


Q ss_pred             HHHHHHHHcCCCceeeccccccChHHHHHHHHhCCC----------CCCceEEEECCCCcEEcc
Q 008311          403 QKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHF----------KNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       403 ~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V----------~~IPtlVVLDpqGkVv~~  456 (570)
                      .++|.+. ..++|.-+     .|..  ..+.+.|++          ...|+++|||++|+|+..
T Consensus        78 ~~~~~~~-~~~~~~~l-----~D~~--~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~  133 (160)
T d2cx4a1          78 LKKFKDE-NRLAFNLL-----SDYN--REVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYK  133 (160)
T ss_dssp             HHHHHHH-HTCSSEEE-----ECTT--SHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEE
T ss_pred             hhhhccc-ceeeEEEe-----ecCC--cchHHHcCccccccccccccceeeEEEEcCCCEEEEE
Confidence            5555442 45555433     3432  357788887          346899999999999865

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.43  E-value=1e-13  Score=127.70  Aligned_cols=107  Identities=11%  Similarity=0.095  Sum_probs=82.5

Q ss_pred             CCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHH
Q 008311          334 STKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQ  410 (570)
Q Consensus       334 ~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~  410 (570)
                      ..|+.+++++++||+|+|+|| +.|||+|..++  +.+.|+++++      .+.+||+||. |     +....+.|.+..
T Consensus        32 ~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~------~g~~vv~is~-d-----~~~~~~~~~~~~   99 (169)
T d2bmxa1          32 DYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFED------RDAQILGVSI-D-----SEFAHFQWRAQH   99 (169)
T ss_dssp             GGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHT------TTEEEEEEES-S-----CHHHHHHHHHHC
T ss_pred             ccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccc------cCcceeeccc-c-----chhhhhhhcccc
Confidence            345789999999999999998 99999999999  9999999973      4799999996 2     233445554322


Q ss_pred             cCCCceeeccccccChHHHHHHHHhCCC-----CCCceEEEECCCCcEEcc
Q 008311          411 SSMPWYTVYHPTLIDRAVIRYVKDVWHF-----KNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       411 ~~MPW~aV~fP~l~D~~~~~~L~~~y~V-----~~IPtlVVLDpqGkVv~~  456 (570)
                      ...  ..++||.+.|.  ...+.+.||+     ...|+++|||++|+|...
T Consensus       100 ~~~--~~~~f~ll~D~--~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~  146 (169)
T d2bmxa1         100 NDL--KTLPFPMLSDI--KRELSQAAGVLNADGVADRVTFIVDPNNEIQFV  146 (169)
T ss_dssp             TTG--GGCCSCEEECT--TSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEE
T ss_pred             ccc--ccceEEEEecc--HHHHHHHcCCCccCCccceeEEEEcCCCEEEEE
Confidence            211  23467777775  3468888998     678999999999999753

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=1.2e-13  Score=124.57  Aligned_cols=112  Identities=15%  Similarity=0.091  Sum_probs=80.8

Q ss_pred             CCCcccCCCCCeeeccccCCC--EEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhh
Q 008311          327 LQPLVDGSTKRRVNIEVLRRK--NVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPT  402 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkGK--vVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~  402 (570)
                      |...+.+.+|+++++++++||  +|+++||++|||+|..++  |.+.|++++      +.+++|+.|+. |     +...
T Consensus         9 PdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~------~~~~~vi~vs~-d-----~~~~   76 (153)
T d1xvwa1           9 PDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFE------NDDSAALAISV-G-----PPPT   76 (153)
T ss_dssp             CCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTS------SSSEEEEEEES-C-----CHHH
T ss_pred             cCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhc------ccccccccccc-h-----hhhH
Confidence            344567899999999999996  566677899999999999  999999885      35899999995 3     3445


Q ss_pred             HHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCC----C--CceEEEECCCCcEEcc
Q 008311          403 QKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK----N--KPILVVLDPQGRVVSP  456 (570)
Q Consensus       403 ~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~----~--IPtlVVLDpqGkVv~~  456 (570)
                      .+.|.+. .+++|..     +.|......+.+.|++.    +  .|+++|||++|+|...
T Consensus        77 ~~~~~~~-~~~~~~~-----l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~  130 (153)
T d1xvwa1          77 HKIWATQ-SGFTFPL-----LSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFA  130 (153)
T ss_dssp             HHHHHHH-HTCCSCE-----EECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEE
T ss_pred             HHHHhhh-hccceeE-----EecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEE
Confidence            5666543 3455432     22322234577888873    3  3579999999999753

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.36  E-value=2e-13  Score=126.74  Aligned_cols=106  Identities=11%  Similarity=0.083  Sum_probs=82.1

Q ss_pred             CeeeccccCCC-EEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHc-
Q 008311          337 RRVNIEVLRRK-NVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQS-  411 (570)
Q Consensus       337 ~~Vsls~LkGK-vVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~-  411 (570)
                      +.+++++++|| +|+|+|| +.|||+|..++  +++.|+++++      .+.+||+||. |     +.....+|.+... 
T Consensus        23 ~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~------~g~~Vvgis~-d-----~~~~~~~~~~~~~~   90 (170)
T d1zofa1          23 EHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHE------KGFNVIGVSI-D-----SEQVHFAWKNTPVE   90 (170)
T ss_dssp             EEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHH------TTEEEEEEES-S-----CHHHHHHHHTSCGG
T ss_pred             eEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhcc------CCeeEecccc-c-----chhhHHHHHhhhhh
Confidence            57999999996 7999999 99999999999  9999999974      4799999996 3     3555666754321 


Q ss_pred             CCCceeeccccccChHHHHHHHHhCCCC-----CCceEEEECCCCcEEcc
Q 008311          412 SMPWYTVYHPTLIDRAVIRYVKDVWHFK-----NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       412 ~MPW~aV~fP~l~D~~~~~~L~~~y~V~-----~IPtlVVLDpqGkVv~~  456 (570)
                      ...-..++||.+.|.  ...+.+.||+.     ..|+++|||++|+|...
T Consensus        91 ~~~~~~~~~~~l~D~--~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~  138 (170)
T d1zofa1          91 KGGIGQVSFPMVADI--TKSISRDYDVLFEEAIALRGAFLIDKNMKVRHA  138 (170)
T ss_dssp             GTCCCCCSSCEEECT--TSHHHHHTTCEETTTEECEEEEEEETTTEEEEE
T ss_pred             cccccCccccccccc--ccHHHHHcCCCccccceeEEEEEEcCCCeEEEE
Confidence            112224677777775  35788999983     56889999999999753

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=2.5e-13  Score=124.97  Aligned_cols=109  Identities=16%  Similarity=0.110  Sum_probs=75.8

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ...+.+.+|+.+++++++||+|+|+|| +.|||+|..++  |.+.|.++        +++++++||. |     +....+
T Consensus        26 dF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~--------~~~~vv~Is~-d-----~~~~~~   91 (164)
T d1qxha_          26 TFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEI--------DNTVVLCISA-D-----LPFAQS   91 (164)
T ss_dssp             CCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTS--------TTEEEEEEES-S-----CHHHHT
T ss_pred             CeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhh--------ccceeeeEEc-C-----CHHHHH
Confidence            344568899999999999999999888 66999999999  88777654        3689999996 2     222333


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHHHhCCCC-------C--CceEEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-------N--KPILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-------~--IPtlVVLDpqGkVv~~  456 (570)
                      +|...      +.++||.+++......+.+.||+.       +  .|+++|||++|+|+..
T Consensus        92 ~~~~~------~~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~  146 (164)
T d1qxha_          92 RFCGA------EGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFS  146 (164)
T ss_dssp             TCCSS------TTCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred             HHHHH------hCCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEE
Confidence            33221      122333332322235677888863       2  3789999999999864

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.5e-12  Score=119.54  Aligned_cols=116  Identities=9%  Similarity=0.035  Sum_probs=79.0

Q ss_pred             CCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccC--CCCCChhhHHHHHHHH
Q 008311          335 TKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDH--FIHWDDPTQKKFETLQ  410 (570)
Q Consensus       335 ~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~--s~~w~D~~~~~F~~~~  410 (570)
                      +|+.++++++|||+|++.+|||||++|++..  |+++|+++++      ++|+|+++|..+-  ....++++...|-++.
T Consensus        13 ~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~------~g~~Il~fP~nqF~~qE~~~~~ei~~f~~~~   86 (184)
T d2f8aa1          13 GGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGP------RGLVVLGFPCNQFGHQENAKNEEILNSLKYV   86 (184)
T ss_dssp             CSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTEEEEEEECCCSTTTTCSCHHHHHHHHHHT
T ss_pred             CCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcc------cceeEEEeeccccccccccchhhhhhhhhee
Confidence            3788999999999999999999999999876  9999999974      4799999997432  1222334444554432


Q ss_pred             cCCCceeeccccccC--------hHHHHHHHHhC--------CCCCCc-----------------eEEEECCCCcEEcc
Q 008311          411 SSMPWYTVYHPTLID--------RAVIRYVKDVW--------HFKNKP-----------------ILVVLDPQGRVVSP  456 (570)
Q Consensus       411 ~~MPW~aV~fP~l~D--------~~~~~~L~~~y--------~V~~IP-----------------tlVVLDpqGkVv~~  456 (570)
                      ..-.=+.+.||.+..        .+.-+.+++..        ++.+.|                 +-+|||++|+|+.+
T Consensus        87 ~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~G~vv~r  165 (184)
T d2f8aa1          87 RPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRR  165 (184)
T ss_dssp             SSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEE
T ss_pred             ccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCCCCEEEE
Confidence            212224445543211        12345565543        344556                 67999999999875

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5e-12  Score=112.26  Aligned_cols=117  Identities=12%  Similarity=0.087  Sum_probs=79.3

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecCCCH-HhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDIS-QEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCp-PCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ..+.+.+|++|++++|+||+|+|+||++||| +|...+  |.+++++++...  ....+.++.++..+     .....+.
T Consensus         3 F~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~   75 (160)
T d1wp0a1           3 FSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSIT--TLPDLTPLFISIDP-----ERDTKEA   75 (160)
T ss_dssp             CEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCT--TSCCEEEEEEESCT-----TTCCHHH
T ss_pred             eEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhccc--ccccccccccccCC-----CcccHHH
Confidence            3567889999999999999999999999996 688877  999999986522  12455566666421     1112222


Q ss_pred             HHHH--HcCCCceeeccccccChHHHHHHHHhCCCCC---------------CceEEEECCCCcEEcc
Q 008311          406 FETL--QSSMPWYTVYHPTLIDRAVIRYVKDVWHFKN---------------KPILVVLDPQGRVVSP  456 (570)
Q Consensus       406 F~~~--~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~---------------IPtlVVLDpqGkVv~~  456 (570)
                      ..++  ....+|..+..    +......+...|++..               .|+++||||+|+|+..
T Consensus        76 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~  139 (160)
T d1wp0a1          76 IANYVKEFSPKLVGLTG----TREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY  139 (160)
T ss_dssp             HHHHHHTTCTTCEEEEC----CHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEE
T ss_pred             HHHHHhhcCCCcccccC----chHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEE
Confidence            2222  34556655543    3333455667776533               3688999999999864

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.32  E-value=3.3e-12  Score=117.53  Aligned_cols=120  Identities=10%  Similarity=0.121  Sum_probs=79.1

Q ss_pred             CCCcccCCCCCeeeccccCCCEEEEEEecCCCH-HhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhH
Q 008311          327 LQPLVDGSTKRRVNIEVLRRKNVLLLISDLDIS-QEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQ  403 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCp-PCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~  403 (570)
                      +...+.+.+|+.+++++|+||+|+|+||++||| +|...+  |.++++++++    .+.++++|+||+ |...+ +.+..
T Consensus        12 p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~----~~~~v~~v~isi-Dp~~D-tp~~l   85 (172)
T d1xzoa1          12 EPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKA----ENIDVRIISFSV-DPEND-KPKQL   85 (172)
T ss_dssp             CCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHH----TTCCCEEEEEES-CTTTC-CHHHH
T ss_pred             CCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhcc----cccccccccccc-ccccc-hHHHH
Confidence            345577999999999999999999999999997 699998  9999999964    256899999997 42100 12223


Q ss_pred             HHHHHHHc--CCCceeeccccccChH-HHHHHHHhCCC-CC----------CceEEEECCCCcEEc
Q 008311          404 KKFETLQS--SMPWYTVYHPTLIDRA-VIRYVKDVWHF-KN----------KPILVVLDPQGRVVS  455 (570)
Q Consensus       404 ~~F~~~~~--~MPW~aV~fP~l~D~~-~~~~L~~~y~V-~~----------IPtlVVLDpqGkVv~  455 (570)
                      ++|.+.+.  ...|..+.-+   +.+ ..+...+.|+. .+          .|.++||||+|+|+.
T Consensus        86 ~~y~~~~~~~~~~w~~lt~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~  148 (172)
T d1xzoa1          86 KKFAANYPLSFDNWDFLTGY---SQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLK  148 (172)
T ss_dssp             HHHHTTSCCCGGGEEEEBCS---CHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEE
T ss_pred             HHHHHHhccccccceeeccc---hHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEE
Confidence            44433111  1124333211   222 22333344433 22          367999999999974

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.27  E-value=3.4e-12  Score=120.56  Aligned_cols=108  Identities=12%  Similarity=0.066  Sum_probs=83.2

Q ss_pred             CCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHH
Q 008311          333 GSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETL  409 (570)
Q Consensus       333 g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~  409 (570)
                      +.+.++|++++++||+|+|+|| +.|||.|..++  +++.|+++++      .+.+|++||. |     +-...++|.+.
T Consensus        17 ~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~------~~~~v~gIS~-D-----s~~sh~~f~~~   84 (186)
T d1n8ja_          17 NGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQK------LGVDVYSVST-D-----THFTHKAWHSS   84 (186)
T ss_dssp             TTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH------TTEEEEEEES-S-----CHHHHHHHHHH
T ss_pred             CCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccc------ccEEEEeccc-c-----CHHHHHHHhcc
Confidence            3344689999999999999999 77789999999  9999999974      4799999996 3     34456777653


Q ss_pred             HcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311          410 QSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       410 ~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~  456 (570)
                      ...  -..++||.+.|.  .+.+.+.||+.      ..|.++|||++|+|...
T Consensus        85 ~~~--~~~~~fpllsD~--~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~  133 (186)
T d1n8ja_          85 SET--IAKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDPQGIIQAI  133 (186)
T ss_dssp             CTT--GGGCCSEEEECT--TSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             ccc--cccccccccccH--HHHHHHHhCCCcccCCcceeeEEEECchheEEEE
Confidence            322  123567776675  45789999983      36889999999999653

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=5.2e-12  Score=115.07  Aligned_cols=110  Identities=14%  Similarity=0.119  Sum_probs=81.5

Q ss_pred             CCCCcccCCCCCeeecccc--CCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCCh
Q 008311          326 DLQPLVDGSTKRRVNIEVL--RRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDD  400 (570)
Q Consensus       326 ~~~pl~~g~~G~~Vsls~L--kGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D  400 (570)
                      .|...+.+.+|+.++++++  +|++|+++|| ++|||+|..++  +.+.|.++++       +..+++||. |     +-
T Consensus        11 aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~-------~~~~~~is~-d-----~~   77 (156)
T d2a4va1          11 IPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-------YAAVFGLSA-D-----SV   77 (156)
T ss_dssp             CCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT-------TCEEEEEES-C-----CH
T ss_pred             CCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh-------ccceeeecc-c-----hh
Confidence            3445567899999999998  5678988888 89999999999  9999999962       467899985 3     23


Q ss_pred             hhHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCc-----eEEEECCCCcEEcc
Q 008311          401 PTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKP-----ILVVLDPQGRVVSP  456 (570)
Q Consensus       401 ~~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IP-----tlVVLDpqGkVv~~  456 (570)
                      ...++|.+.      +.++||.+.|..  ..+.+.||+...|     ..++|+++|+++.+
T Consensus        78 ~~~~~f~~~------~~l~f~~L~D~~--~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~  130 (156)
T d2a4va1          78 TSQKKFQSK------QNLPYHLLSDPK--REFIGLLGAKKTPLSGSIRSHFIFVDGKLKFK  130 (156)
T ss_dssp             HHHHHHHHH------HTCSSEEEECTT--CHHHHHHTCBSSSSSCBCCEEEEEETTEEEEE
T ss_pred             hhHHhhhcc------cCccceeccchH--HHHHHHcCCCccccCCeeEEEEEEECCeEEEE
Confidence            445666553      234667666763  4688889875544     35666688998765

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.23  E-value=9.4e-12  Score=121.77  Aligned_cols=110  Identities=10%  Similarity=0.080  Sum_probs=83.2

Q ss_pred             ccCCCCCeeecccc---CCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          331 VDGSTKRRVNIEVL---RRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       331 ~~g~~G~~Vsls~L---kGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      +.+.+| ++.++++   +||.|+|+|+ |.|||.|..++  +.+.|+++++      .+.+||+||+ |     +....+
T Consensus        12 l~t~~G-~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~------~g~~vigiS~-D-----s~~sh~   78 (237)
T d2zcta1          12 VTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQR------LGVDLIGLSV-D-----SVFSHI   78 (237)
T ss_dssp             EEETTE-EEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHH------TTEEEEEEES-S-----CHHHHH
T ss_pred             EEcCCC-CEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhcc------CCcceeeccC-C-----cHHHHH
Confidence            456677 4677664   8999888888 99999999999  9999999974      4799999996 3     234556


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHHHhCCC-------CCCceEEEECCCCcEEc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHF-------KNKPILVVLDPQGRVVS  455 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V-------~~IPtlVVLDpqGkVv~  455 (570)
                      .|.+......-..++||.+.|.  ...+.+.||+       ...|+++||||+|+|..
T Consensus        79 ~w~~~~~~~~~~~l~fpllsD~--~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~  134 (237)
T d2zcta1          79 KWKEWIERHIGVRIPFPIIADP--QGTVARRLGLLHAESATHTVRGVFIVDARGVIRT  134 (237)
T ss_dssp             HHHHHHHHHHCCCCCSCEEECG--GGHHHHHTTCC----CCTTCCEEEEECTTSBEEE
T ss_pred             HHhhhhhhhcccccccccccCc--chHHHHHcCCccccccccceeeeEEECCCCEEEE
Confidence            6654322211235678877775  4678899998       46899999999999965

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.1e-11  Score=118.07  Aligned_cols=115  Identities=16%  Similarity=0.088  Sum_probs=89.2

Q ss_pred             CCCcc-----cCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCC
Q 008311          327 LQPLV-----DGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHW  398 (570)
Q Consensus       327 ~~pl~-----~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w  398 (570)
                      ++|.|     .+.+|++|++++++||.|+|+|+ +.|||.|..++  |.+.|+++++      .+.+|++||. |     
T Consensus        10 ~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~------~g~~vigIS~-D-----   77 (197)
T d1qmva_          10 PAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRK------LGCEVLGVSV-D-----   77 (197)
T ss_dssp             BCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT------TTEEEEEEES-S-----
T ss_pred             cCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhcc------CCcEEEEEec-C-----
Confidence            45555     46688899999999999999999 99999999999  9999999973      5899999996 3     


Q ss_pred             ChhhHHHHHH-HHcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEc
Q 008311          399 DDPTQKKFET-LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVS  455 (570)
Q Consensus       399 ~D~~~~~F~~-~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~  455 (570)
                      +....++|.+ ....+.-..++||.+.|.  .+.+.+.||+.      ..|.+++|||+|+|..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~fpll~D~--~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~  139 (197)
T d1qmva_          78 SQFTHLAWINTPRKEGGLGPLNIPLLADV--TRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQ  139 (197)
T ss_dssp             CHHHHHHHHTSCGGGTCCCSCSSCEEECT--TCHHHHHTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             CHHHHHhhhcchhhhcCcCCCccceEecc--chHHHHHhCCCcccCCeeeEEEEEECCCCcEEE
Confidence            2344556643 222222235778888886  45789999984      3688999999999965

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.18  E-value=4e-11  Score=109.76  Aligned_cols=109  Identities=10%  Similarity=0.042  Sum_probs=75.8

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ...+.+.+|+.+++++++||+|+|+|| +.|||+|..++  |.+.++++        ++.+++.||. |     +....+
T Consensus        24 dF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~--------~~~~vv~Is~-d-----~~~~~~   89 (163)
T d1psqa_          24 DFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--------DNTVVLTVSM-D-----LPFAQK   89 (163)
T ss_dssp             CCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--------TTEEEEEEES-S-----CHHHHH
T ss_pred             CeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhh--------cccceEEEEe-c-----cHHHHH
Confidence            344578899999999999999999998 67999999998  66555544        3688999996 2     344566


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHHHhCCCC----CC--ceEEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK----NK--PILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~----~I--PtlVVLDpqGkVv~~  456 (570)
                      +|........+..+.     +. ....+.+.||+.    ++  ++++|||++|+|+..
T Consensus        90 ~~~~~~~~~~~~~~~-----~~-~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~  141 (163)
T d1psqa_          90 RWCGAEGLDNAIMLS-----DY-FDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYV  141 (163)
T ss_dssp             HHHHHHTCTTSEEEE-----CT-TTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEE
T ss_pred             HHHHHcCCcceeeec-----cc-cchhHHHhheeecccccceeEEEEEECCCCEEEEE
Confidence            776543333332221     21 123466778763    22  368999999999864

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=1.4e-10  Score=102.25  Aligned_cols=119  Identities=8%  Similarity=0.018  Sum_probs=73.9

Q ss_pred             CCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH---HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311          328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI---LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK  404 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~---L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~  404 (570)
                      ...+.+.+|++|++++|+||+|+|+||.+||++|...+   +..+++.....   ....+.+++++....  ....+...
T Consensus         8 dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~   82 (169)
T d2b7ka1           8 PFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSK---YGITLQPLFITCDPA--RDSPAVLK   82 (169)
T ss_dssp             CCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHH---HCCCCEEEEEESCTT--TCCHHHHH
T ss_pred             CeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhcccc---ccccceeeeeccccc--cCchhhhh
Confidence            36678899999999999999999999999997655544   55566555431   245677777775321  11122222


Q ss_pred             HHHHHHcCCCceeeccccccChHHHHHHH----------------HhCCCCCCceEEEECCCCcEEcc
Q 008311          405 KFETLQSSMPWYTVYHPTLIDRAVIRYVK----------------DVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~----------------~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      .+.. ...-+|.....    +........                ..|.+...|+++||||+|+|+..
T Consensus        83 ~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~  145 (169)
T d2b7ka1          83 EYLS-DFHPSILGLTG----TFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA  145 (169)
T ss_dssp             HHHT-TSCTTCEEEEC----CHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred             hhhc-ccccccccccc----chhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEE
Confidence            2222 23334544443    211122222                23456778999999999999875

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=2.1e-11  Score=104.63  Aligned_cols=77  Identities=12%  Similarity=-0.012  Sum_probs=55.8

Q ss_pred             ccccCCCEEEEEEecCCCHHhHHHH-----HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCc
Q 008311          341 IEVLRRKNVLLLISDLDISQEELSI-----LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPW  415 (570)
Q Consensus       341 ls~LkGKvVlL~FwAsWCpPCr~e~-----L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW  415 (570)
                      ++..+||+|+|+|||+||+||+...     +.++++.++        ++.++.+.+.      .+.              
T Consensus        17 l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~--------~~~~~~~~~~------~~~--------------   68 (117)
T d2fwha1          17 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--------DTVLLQANVT------AND--------------   68 (117)
T ss_dssp             HHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--------TSEEEEEECT------TCC--------------
T ss_pred             HHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc--------ceEEEecccc------cch--------------
Confidence            4456899999999999999999876     356665542        4556666541      110              


Q ss_pred             eeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          416 YTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       416 ~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                                 +....+.+.|+|.++|+++++|++|+++..
T Consensus        69 -----------~~~~~l~~~~~v~~~Pt~~~~~~~G~~~~~   98 (117)
T d2fwha1          69 -----------AQDVALLKHLNVLGLPTILFFDGQGQEHPQ   98 (117)
T ss_dssp             -----------HHHHHHHHHTTCCSSSEEEEECTTSCBCGG
T ss_pred             -----------hHHHHHHhhhehhhceEEEEEeCCCcEEec
Confidence                       112346778999999999999999998753

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.12  E-value=2.4e-11  Score=111.61  Aligned_cols=107  Identities=19%  Similarity=0.113  Sum_probs=74.0

Q ss_pred             CcccCCCCCeeeccccCCCEEEEEEecC-CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          329 PLVDGSTKRRVNIEVLRRKNVLLLISDL-DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       329 pl~~g~~G~~Vsls~LkGKvVlL~FwAs-WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      ..+.+.+|+.+++++++||.|+|+||.. |||.|..++  |++.|++++        +.+|++||. |     +....++
T Consensus        25 F~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--------~~~vi~iS~-d-----~~~~~~~   90 (164)
T d1q98a_          25 FILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--------NTIVLCISA-D-----LPFAQAR   90 (164)
T ss_dssp             CEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--------TEEEEEEES-S-----CHHHHTT
T ss_pred             cEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--------cceEEeecC-C-----cHHHHHH
Confidence            4456889999999999999999999966 677799999  999888884        478999996 3     2334444


Q ss_pred             HHHHHcCCC-ceeeccccccChHHHHHHHHhCCC-------CCC--ceEEEECCCCcEEcc
Q 008311          406 FETLQSSMP-WYTVYHPTLIDRAVIRYVKDVWHF-------KNK--PILVVLDPQGRVVSP  456 (570)
Q Consensus       406 F~~~~~~MP-W~aV~fP~l~D~~~~~~L~~~y~V-------~~I--PtlVVLDpqGkVv~~  456 (570)
                      |.+. ...+ +..+.     + .....+.+.|++       .|+  |.++|||++|+|+..
T Consensus        91 ~~~~-~~~~~~~~~~-----~-~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~  144 (164)
T d1q98a_          91 FCGA-EGIENAKTVS-----T-FRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHS  144 (164)
T ss_dssp             CTTT-TTCTTEEEEE-----C-TTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred             HHHH-hCCccccccc-----c-ccchhHHHhhceecccCccccCcccEEEEECCCCEEEEE
Confidence            4332 1222 21111     1 112345666665       233  789999999999864

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.10  E-value=3.6e-11  Score=110.40  Aligned_cols=110  Identities=17%  Similarity=0.107  Sum_probs=67.2

Q ss_pred             CCCcccCCCCCeeeccccCCCEEEEEEecC-CCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311          327 LQPLVDGSTKRRVNIEVLRRKNVLLLISDL-DISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK  405 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkGKvVlL~FwAs-WCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~  405 (570)
                      |...+.+.+|+.+++++|+||+|+|+||++ |||+|..++ .++++++++      .+.+|++|++ |     +..+.++
T Consensus        24 P~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~-~~l~~~~~~------~g~~vv~Is~-d-----~~~~~~~   90 (166)
T d1xvqa_          24 PAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSV-RTFDERAAA------SGATVLCVSK-D-----LPFAQKR   90 (166)
T ss_dssp             CCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHH-HHHHHHHHH------TTCEEEEEES-S-----CHHHHTT
T ss_pred             CCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHH-HHHhhhccc------cccccccccc-c-----hHHHHHH
Confidence            344566889999999999999999999966 678899987 333344432      2588999996 2     1223333


Q ss_pred             HHHHHcCCCceeeccccccChHHHHHHHHhCCCC-------C--CceEEEECCCCcEEcc
Q 008311          406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-------N--KPILVVLDPQGRVVSP  456 (570)
Q Consensus       406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-------~--IPtlVVLDpqGkVv~~  456 (570)
                      |.+. ...+...+..    |.  ...+.+.|++.       +  .|+++|||++|+|+..
T Consensus        91 ~~~~-~~~~~~~~~~----~~--~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~  143 (166)
T d1xvqa_          91 FCGA-EGTENVMPAS----AF--RDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYT  143 (166)
T ss_dssp             CC-------CEEEEE----CT--TSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEE
T ss_pred             HHHH-hCCccccccc----ch--hHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEE
Confidence            3321 1222221111    11  12244455542       2  3689999999999864

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.08  E-value=8.4e-11  Score=108.77  Aligned_cols=109  Identities=17%  Similarity=0.107  Sum_probs=82.2

Q ss_pred             CCCCeeeccccCC-CEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHH
Q 008311          334 STKRRVNIEVLRR-KNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETL  409 (570)
Q Consensus       334 ~~G~~Vsls~LkG-KvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~  409 (570)
                      .+|++|++++++| |+|+|+|+ +.|||.|..++  +.+.|+++++      .+.+||+||. |     +-...+.|.+.
T Consensus        14 ~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~------~g~~vigIS~-D-----~~~~~~~~~~~   81 (170)
T d2h01a1          14 NTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE------RNVELLGCSV-D-----SKFTHLAWKKT   81 (170)
T ss_dssp             SCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH------TTEEEEEEES-S-----CHHHHHHHHTS
T ss_pred             CCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhc------CCeeEecccC-C-----cHHHHHhHhhh
Confidence            5677899999998 78999888 89999999999  9999999974      4799999995 2     23445566432


Q ss_pred             -HcCCCceeeccccccChHHHHHHHHhCCCC-----CCceEEEECCCCcEEcc
Q 008311          410 -QSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-----NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       410 -~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-----~IPtlVVLDpqGkVv~~  456 (570)
                       .....=..++||.+.|.  .+.+.+.||+-     ..+.++|||++|+|...
T Consensus        82 ~~~~~~~~~~~f~llsD~--~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~  132 (170)
T d2h01a1          82 PLSQGGIGNIKHTLISDI--SKSIARSYDVLFNESVALRAFVLIDKQGVVQHL  132 (170)
T ss_dssp             CGGGTCCCSCSSEEEECT--TSHHHHHTTCEETTTEECCEEEEECTTSBEEEE
T ss_pred             hhhhccccccCCceeEcC--ccHHHHHhCCccccccceeeeEEEcCCCeEEEE
Confidence             11112234667776675  35688889872     35799999999999754

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.5e-10  Score=110.26  Aligned_cols=114  Identities=11%  Similarity=0.077  Sum_probs=85.0

Q ss_pred             CCCcccCCCCCeeeccccCC-CEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhh
Q 008311          327 LQPLVDGSTKRRVNIEVLRR-KNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPT  402 (570)
Q Consensus       327 ~~pl~~g~~G~~Vsls~LkG-KvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~  402 (570)
                      |...+.+.+|+ +++++++| |.|+|+|+ +.|||.|..++  +.+.|+++++      .+.+|++||. |     +...
T Consensus         8 PdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~------~g~~v~giS~-D-----s~~s   74 (220)
T d1prxa_           8 PNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAK------RNVKLIALSI-D-----SVED   74 (220)
T ss_dssp             CCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHT------TTEEEEEEES-S-----CHHH
T ss_pred             CCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhc------ccceeecccc-c-----cccc
Confidence            44445567774 99999988 88888888 77999999999  9999999973      4799999996 3     2344


Q ss_pred             HHHHHHH----HcCCCceeeccccccChHHHHHHHHhCCCC------------CCceEEEECCCCcEEc
Q 008311          403 QKKFETL----QSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------------NKPILVVLDPQGRVVS  455 (570)
Q Consensus       403 ~~~F~~~----~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------------~IPtlVVLDpqGkVv~  455 (570)
                      ...|.+.    .....=..++||.+.|.  .+.+.+.||+-            .++.++|||++|+|..
T Consensus        75 h~~~~~~~~~~~~~~~~~~l~fpllsD~--~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~  141 (220)
T d1prxa_          75 HLAWSKDINAYNSEEPTEKLPFPIIDDR--NRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKL  141 (220)
T ss_dssp             HHHHHHHHHHHTTSCCCSCCSSCEEECT--TCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEE
T ss_pred             hhhhhhhhhhccccccccCcccccccCc--ccHHHHHhCCccccccccccceeeeEEEEEEcCccceeE
Confidence            4555432    12222235778877775  45789999874            4578999999999965

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.00  E-value=3.2e-10  Score=96.85  Aligned_cols=72  Identities=15%  Similarity=0.102  Sum_probs=55.4

Q ss_pred             cccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311          342 EVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY  419 (570)
Q Consensus       342 s~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~  419 (570)
                      +...||+|+|+|||+||+||+.+.  +.++++++++       .+.++.|.+        |+.                 
T Consensus        21 ~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~-------~~~~~~i~~--------d~~-----------------   68 (111)
T d1xwaa_          21 TKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-------NVVVLKVDV--------DEC-----------------   68 (111)
T ss_dssp             HHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-------TEEEEEEET--------TTC-----------------
T ss_pred             HhcCCCEEEEEEECCcccCccccchhHHHHhhhccc-------ceEEEEEEe--------ecC-----------------
Confidence            345799999999999999999998  9999888752       466666653        110                 


Q ss_pred             cccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          420 HPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       420 fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                                ..+.++|+|+++|+++++ ++|+.+.+
T Consensus        69 ----------~~l~~~~~V~~~Pt~~~~-~~G~~v~~   94 (111)
T d1xwaa_          69 ----------EDIAMEYNISSMPTFVFL-KNGVKVEE   94 (111)
T ss_dssp             ----------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             ----------cchhhcCCCccccEEEEE-ECCEEEEE
Confidence                      125667999999999888 68998764

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.3e-10  Score=99.94  Aligned_cols=80  Identities=8%  Similarity=0.069  Sum_probs=58.6

Q ss_pred             cccCCCEEEEEEecC-------CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcC
Q 008311          342 EVLRRKNVLLLISDL-------DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSS  412 (570)
Q Consensus       342 s~LkGKvVlL~FwAs-------WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~  412 (570)
                      ++-+||+|+|+|||+       |||||+...  +.++.++++       +++.++.|.+ |      +..     +..  
T Consensus        17 ~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~-------~~~~~~~vdv-~------~~~-----~~~--   75 (119)
T d1woua_          17 EQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS-------EGCVFIYCQV-G------EKP-----YWK--   75 (119)
T ss_dssp             HTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC-------TTEEEEEEEC-C------CHH-----HHH--
T ss_pred             HHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcC-------CceEEEEEEC-C------CCc-----ccc--
Confidence            345899999999996       999999999  878876653       3688999986 2      211     111  


Q ss_pred             CCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          413 MPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       413 MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                                  |.  ...+++.|+|+++||+++++..++++..
T Consensus        76 ------------d~--~~~l~~~~~V~~iPT~i~~~~g~~l~~~  105 (119)
T d1woua_          76 ------------DP--NNDFRKNLKVTAVPTLLKYGTPQKLVES  105 (119)
T ss_dssp             ------------CT--TCHHHHHHCCCSSSEEEETTSSCEEEGG
T ss_pred             ------------hh--hhhHHHhCCeEEEEEEEEEECCeEEeee
Confidence                        11  1246778999999999999877777643

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.84  E-value=3.5e-09  Score=89.42  Aligned_cols=69  Identities=14%  Similarity=0.193  Sum_probs=53.9

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+|+|+|+|||+||+||+...  +.++.+++.       .++.++.|.+        |..                    
T Consensus        18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~-------~~~~~~~vd~--------d~~--------------------   62 (107)
T d1dbya_          18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK-------DKLKCVKLNT--------DES--------------------   62 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCcEEEEEECCCCCCccccChHHHHHHHhhc-------ccceEEEEec--------ccc--------------------
Confidence            468999999999999999998  777766653       3678888874        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.++|+|+++|++++++ +|+.+.+
T Consensus        63 -------~~l~~~~~V~~~Pt~~~~~-~G~~v~~   88 (107)
T d1dbya_          63 -------PNVASEYGIRSIPTIMVFK-GGKKCET   88 (107)
T ss_dssp             -------HHHHHHHTCCSSCEEEEES-SSSEEEE
T ss_pred             -------hhHHHHhcccceEEEEEEE-CCeEEEE
Confidence                   1256779999999999996 8988764

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.83  E-value=3.7e-09  Score=88.96  Aligned_cols=69  Identities=16%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+|+|+|+|||+||+||+...  +.++.++++       +++.++-|.+        |..                    
T Consensus        16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~-------~~~~~~~vd~--------~~~--------------------   60 (105)
T d1nw2a_          16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA-------DKVTVAKLNV--------DEN--------------------   60 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCcEEEEEECCCCCCcccccchhhhhhhhcC-------CceEEEEEEC--------CCC--------------------
Confidence            468999999999999999998  889888885       2577777764        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.++|+|+++|+++++ ++|+.+.+
T Consensus        61 -------~~~~~~~~V~~~Pt~~~~-~~G~~~~~   86 (105)
T d1nw2a_          61 -------PETTSQFGIMSIPTLILF-KGGEPVKQ   86 (105)
T ss_dssp             -------HHHHHHTTCCBSSEEEEE-ETTEEEEE
T ss_pred             -------cccHHHCCcceeeEEEEE-ECCEEEEE
Confidence                   135678999999999999 47988754

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=3.7e-09  Score=89.25  Aligned_cols=69  Identities=16%  Similarity=0.206  Sum_probs=51.1

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+|+|+|+|||+||+||+...  +.++.+++.       .++.++.|.+        |+.                    
T Consensus        19 ~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~-------~~~~~~~vd~--------d~~--------------------   63 (108)
T d2trxa_          19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-------GKLTVAKLNI--------DQN--------------------   63 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTEEEEEEET--------TTC--------------------
T ss_pred             CCCcEEEEEECCCCCCccccCcHHHHHHHHhh-------cceeeeeccc--------cch--------------------
Confidence            368999999999999999877  767666553       3566666653        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.++|+++++||++++ ++|+.+.+
T Consensus        64 -------~~l~~~~~v~~~PT~~~~-~~G~~v~~   89 (108)
T d2trxa_          64 -------PGTAPKYGIRGIPTLLLF-KNGEVAAT   89 (108)
T ss_dssp             -------TTHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------hhHHHHhCCCcEEEEEEE-ECCEEEEE
Confidence                   125678999999998888 58988764

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.80  E-value=6e-09  Score=87.32  Aligned_cols=68  Identities=10%  Similarity=0.132  Sum_probs=52.5

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      +|+|+|+|||+||+||+...  +.++.+++.       ..+.++.|..        |..                     
T Consensus        17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~-------~~~~~~~v~~--------d~~---------------------   60 (104)
T d1fb6a_          17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYS-------GKIAVYKLNT--------DEA---------------------   60 (104)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC---------------------
T ss_pred             CCcEEEEEEcCccCCccccCchhHHHHHhhc-------CccceeEEec--------ccc---------------------
Confidence            57899999999999999988  888877764       2466676663        111                     


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                            ..+.++|+|+++||++++ ++|+.+.+
T Consensus        61 ------~~l~~~~~V~~~Pt~~~~-~~G~~v~~   86 (104)
T d1fb6a_          61 ------PGIATQYNIRSIPTVLFF-KNGERKES   86 (104)
T ss_dssp             ------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             ------hhhhhhcceeeeeEEEEE-EcCeEEEE
Confidence                  136778999999998888 58988854

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.78  E-value=7.1e-09  Score=89.00  Aligned_cols=68  Identities=10%  Similarity=0.207  Sum_probs=50.5

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+|+|+++|||+||+||+...  |.++.++++        ++.++-|..        |+.                    
T Consensus        27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~--------~~~~~~vd~--------~~~--------------------   70 (114)
T d1xfla_          27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--------NVLFLKVDT--------DEL--------------------   70 (114)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--------SEEEEEEET--------TTS--------------------
T ss_pred             cCCeEEEEEEcCCCCCccccccchhhhccccc--------ccceeEEEe--------eec--------------------
Confidence            479999999999999999887  777766552        454555542        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.++|+|+++||++++ .+|+++.+
T Consensus        71 -------~~l~~~~~V~~~Pt~~~~-~~G~~v~~   96 (114)
T d1xfla_          71 -------KSVASDWAIQAMPTFMFL-KEGKILDK   96 (114)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------eeeccccceeeeEEEEEE-ECCEEEEE
Confidence                   125677999999999888 79998765

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=5e-09  Score=88.50  Aligned_cols=68  Identities=13%  Similarity=0.110  Sum_probs=50.8

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++|+|+++|||+||+||+...  |.++.+++.        +..++-|.+        |+.                    
T Consensus        19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~--------~~~~~~vd~--------d~~--------------------   62 (105)
T d2ifqa1          19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS--------NVIFLEVDV--------DDC--------------------   62 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTC--------------------
T ss_pred             CCCEEEEEEEcCCccchhhhhhhhhhhccccc--------cceeeeccc--------ccC--------------------
Confidence            468999999999999999988  877776653        344554542        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+|+++||++++ ++|+.+.+
T Consensus        63 -------~~~~~~~~V~~~Pt~~~~-~~G~~v~~   88 (105)
T d2ifqa1          63 -------QDVASECEVKCMPTFQFF-KKGQKVGE   88 (105)
T ss_dssp             -------HHHHHHTTCCBSSEEEEE-ETTEEEEE
T ss_pred             -------HhHHHHcCceEEEEEEEE-ECCEEEEE
Confidence                   125667999999999999 68999865

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.75  E-value=6.4e-09  Score=89.05  Aligned_cols=68  Identities=12%  Similarity=0.283  Sum_probs=51.1

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||+||+...  |.++.+++.        ++.++.|.+        |+.                    
T Consensus        25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~--------~~~~~~vd~--------d~~--------------------   68 (113)
T d1ti3a_          25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--------NVTFLKVDV--------DEL--------------------   68 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--------SEEEEEEET--------TTC--------------------
T ss_pred             CCCEEEEEEEcCccccchhhhhhhhhhhccCC--------CceEEeeee--------ecc--------------------
Confidence            568999999999999999877  777666552        456666653        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.++|+|+++||++++. +|+.+.+
T Consensus        69 -------~~l~~~~~I~~~Pt~~~~k-~G~~v~~   94 (113)
T d1ti3a_          69 -------KAVAEEWNVEAMPTFIFLK-DGKLVDK   94 (113)
T ss_dssp             -------HHHHHHHHCSSTTEEEEEE-TTEEEEE
T ss_pred             -------ccccccCeecccceEEEEE-CCEEEEE
Confidence                   1256778999999999985 9998865

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.74  E-value=9.7e-09  Score=86.73  Aligned_cols=68  Identities=16%  Similarity=0.206  Sum_probs=53.3

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      +|+|+|+|||+||+||+...  +.++.++++       +.+.++.|.+        |+.                     
T Consensus        20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~-------~~~~~~~vd~--------d~~---------------------   63 (108)
T d1thxa_          20 EQPVLVYFWASWCGPCQLMSPLINLAANTYS-------DRLKVVKLEI--------DPN---------------------   63 (108)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTT-------TTCEEEEEES--------TTC---------------------
T ss_pred             CCcEEEEEECCCCCCccccchHHHHHHHhcC-------Ccceeceecc--------ccc---------------------
Confidence            47999999999999999988  888877764       3577887764        211                     


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                            ..+.++|+|+++||+++++ +|+++.+
T Consensus        64 ------~~l~~~~~I~~~Pt~~~~~-~g~~v~~   89 (108)
T d1thxa_          64 ------PTTVKKYKVEGVPALRLVK-GEQILDS   89 (108)
T ss_dssp             ------HHHHHHTTCCSSSEEEEEE-TTEEEEE
T ss_pred             ------HHHHHHhcccCCCEEEEEE-CCEEEEE
Confidence                  1366789999999999996 7887754

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.74  E-value=7.9e-09  Score=88.97  Aligned_cols=68  Identities=9%  Similarity=0.080  Sum_probs=52.0

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++++|+++|||+||+||+...  |.++.+++        .++.++.|.+        |+.                    
T Consensus        25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~--------~~v~~~~vd~--------d~~--------------------   68 (113)
T d1r26a_          25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEF--------PTVKFAKVDA--------DNN--------------------   68 (113)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHC--------TTSEEEEEET--------TTC--------------------
T ss_pred             CCCeEEEEEECCCCccchhhceecccccccc--------cccccccccc--------ccc--------------------
Confidence            467999999999999999876  77776655        2577777764        210                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+|+++|+++++ ++|+.+.+
T Consensus        69 -------~~l~~~~~V~~~Pt~~~~-~~G~~v~~   94 (113)
T d1r26a_          69 -------SEIVSKCRVLQLPTFIIA-RSGKMLGH   94 (113)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------hhhHHHccccCCCEEEEE-ECCEEEEE
Confidence                   136778999999999888 68988754

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.71  E-value=8.1e-09  Score=94.09  Aligned_cols=44  Identities=14%  Similarity=0.229  Sum_probs=37.4

Q ss_pred             eccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          340 NIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       340 sls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      .+..++||+++|.|||+|||||+.++  |.+++++++        +++++.|++
T Consensus        48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~--------~~~~~~i~~   93 (166)
T d1z6na1          48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--------NIELAIISK   93 (166)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--------TEEEEEECH
T ss_pred             HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC--------CCcEEEEEC
Confidence            45678899999999999999999999  999988763        477787774

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.71  E-value=1.6e-08  Score=86.72  Aligned_cols=73  Identities=10%  Similarity=0.198  Sum_probs=53.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .|+.|+++||++|||+|+.+.  |.++.++++         ..+.+|.+ +     ...+.+                  
T Consensus        25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~---------~~v~~v~~-~-----~~~~~~------------------   71 (115)
T d1zmaa1          25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETK---------AHIYFINS-E-----EPSQLN------------------   71 (115)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC---------CCCEEEET-T-----CGGGHH------------------
T ss_pred             cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhh---------hhhhhhee-e-----cccccc------------------
Confidence            467899999999999999999  888877763         33567765 1     111111                  


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                           ....+.++|+|.++||++++. +|+++.+
T Consensus        72 -----~~~~~~~~~~V~~~PTli~~~-~gk~~~~   99 (115)
T d1zmaa1          72 -----DLQAFRSRYGIPTVPGFVHIT-DGQINVR   99 (115)
T ss_dssp             -----HHHHHHHHHTCCSSCEEEEEE-TTEEEEE
T ss_pred             -----cccccccccccccccEEEEEE-CCEEEEE
Confidence                 123467789999999999995 7887753

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=98.71  E-value=1.3e-08  Score=98.11  Aligned_cols=117  Identities=9%  Similarity=0.039  Sum_probs=83.0

Q ss_pred             CCCCcccC--CCC-Ceeecccc-CCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCC
Q 008311          326 DLQPLVDG--STK-RRVNIEVL-RRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHW  398 (570)
Q Consensus       326 ~~~pl~~g--~~G-~~Vsls~L-kGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w  398 (570)
                      +..|.|.-  .+| .+++++++ +||.|+|+|+ +.|||.|..++  +.+.|+++++      .+.+|++||. |     
T Consensus         6 d~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~------~~~~vigiS~-D-----   73 (219)
T d1xcca_           6 ATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLK------LNCKLIGFSC-N-----   73 (219)
T ss_dssp             CBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHT------TTEEEEEEES-S-----
T ss_pred             CCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcc------cceEEEeecC-c-----
Confidence            34555543  332 36899884 8999999998 88999999999  9999999973      4799999996 3     


Q ss_pred             ChhhHHHHHHHH-cCCCceeeccccccChHHHHHHHHhCCCC------------CCceEEEECCCCcEEcc
Q 008311          399 DDPTQKKFETLQ-SSMPWYTVYHPTLIDRAVIRYVKDVWHFK------------NKPILVVLDPQGRVVSP  456 (570)
Q Consensus       399 ~D~~~~~F~~~~-~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------------~IPtlVVLDpqGkVv~~  456 (570)
                      +......|.+.. ....-..++||.+.|.  .+.+.+.||+-            ..-.++||||+|+|...
T Consensus        74 s~~sh~~w~~~~~~~~~~~~l~fpllsD~--~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~  142 (219)
T d1xcca_          74 SKESHDKWIEDIKYYGKLNKWEIPIVCDE--SRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKAT  142 (219)
T ss_dssp             CHHHHHHHHHHHHHHHTCSCCCCCEEECT--TSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEE
T ss_pred             cHhHHhHHhhhhHhhcccCCCCccccccc--ccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEE
Confidence            344556665422 1111124567776675  35788999982            13489999999999653

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.71  E-value=1.2e-08  Score=85.66  Aligned_cols=76  Identities=9%  Similarity=0.023  Sum_probs=51.6

Q ss_pred             cccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311          342 EVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY  419 (570)
Q Consensus       342 s~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~  419 (570)
                      ..+.+++++++|||+|||||+...  +.++..+...   ..+.++.++-|..        ++                  
T Consensus        11 ~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~---~~~~~v~~~~id~--------~~------------------   61 (107)
T d1a8la2          11 RNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTK---AGKGKILGDMVEA--------IE------------------   61 (107)
T ss_dssp             TTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHH---TTCCCEEEEEEEG--------GG------------------
T ss_pred             HhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhh---ccCCcEEEEEecc--------cc------------------
Confidence            455677888899999999999988  7777655432   1233455554442        11                  


Q ss_pred             cccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          420 HPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       420 fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                      +         ..+.++|+|+++||+ ++.++|+.+.+
T Consensus        62 ~---------~~l~~~~~V~~vPTi-~i~~~G~~~~~   88 (107)
T d1a8la2          62 Y---------PEWADQYNVMAVPKI-VIQVNGEDRVE   88 (107)
T ss_dssp             C---------HHHHHHTTCCSSCEE-EEEETTEEEEE
T ss_pred             c---------cccccccccccceEE-EEEeCCeEEEE
Confidence            1         136778999999986 55689988754

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.5e-08  Score=86.27  Aligned_cols=68  Identities=3%  Similarity=-0.026  Sum_probs=52.0

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+|.|+++|||+||+||+...  +.++.+++.        ++.++-|.+        |+.                    
T Consensus        20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~--------~~~f~~vd~--------d~~--------------------   63 (107)
T d1gh2a_          20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--------QAVFLEVDV--------HQC--------------------   63 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTS--------------------
T ss_pred             CCCEEEEEEECCCCCCccccchhhhccccccc--------ccccccccc--------ccc--------------------
Confidence            478999999999999999998  888877653        355665653        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.+.|+|+++|+++++ .+|+.+.+
T Consensus        64 -------~~l~~~~~v~~~Pt~~~~-~~G~~v~~   89 (107)
T d1gh2a_          64 -------QGTAATNNISATPTFQFF-RNKVRIDQ   89 (107)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------hhhhhhcCceeceEEEEE-ECCEEEEE
Confidence                   125678999999999988 78988764

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.70  E-value=1.4e-08  Score=86.98  Aligned_cols=69  Identities=12%  Similarity=0.131  Sum_probs=53.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .||+|+|+|||+||+||+...  +.++.++++       .++.++-|++        |+.                    
T Consensus        23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~-------~~v~~~~vd~--------d~~--------------------   67 (112)
T d1ep7a_          23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYA-------GKVIFLKVDV--------DAV--------------------   67 (112)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTSEEEEEET--------TTT--------------------
T ss_pred             cCCeEEEEEEcCCcCCCcccchhhhhhhhccc-------ceEEEEEeec--------ccc--------------------
Confidence            579999999999999999988  888888774       2477777764        211                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.++|+|+++||++++ .+|+.+.+
T Consensus        68 -------~~l~~~~~v~~~Pt~~~~-~~G~~v~~   93 (112)
T d1ep7a_          68 -------AAVAEAAGITAMPTFHVY-KDGVKADD   93 (112)
T ss_dssp             -------HHHHHHHTCCBSSEEEEE-ETTEEEEE
T ss_pred             -------ccccccccccCCCEEEEE-ECCEEEEE
Confidence                   135677999999998888 58998765

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.64  E-value=3.7e-08  Score=82.59  Aligned_cols=68  Identities=12%  Similarity=0.073  Sum_probs=51.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+|.|+|+|||+||+||+...  +.++.+++.        +..++.+.+        |+.                    
T Consensus        17 ~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~--------~~~~~~vd~--------d~~--------------------   60 (103)
T d1syra_          17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--------KMVFIKVDV--------DEV--------------------   60 (103)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTT--------------------
T ss_pred             CCCcEEEEEeCCcccCcccccccchhhhhccc--------ceEEEeecc--------ccC--------------------
Confidence            468999999999999999987  877777663        355666653        111                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ..+.++|+|+++||++++ ++|+.+.+
T Consensus        61 -------~~~~~~~~V~~~Pt~i~~-k~G~~v~~   86 (103)
T d1syra_          61 -------SEVTEKENITSMPTFKVY-KNGSSVDT   86 (103)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------cceeeeeeeecceEEEEE-ECCEEEEE
Confidence                   125678999999998888 58998764

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=98.63  E-value=2.5e-08  Score=85.54  Aligned_cols=69  Identities=13%  Similarity=0.075  Sum_probs=51.9

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+|+|+++|||+||+||+...  +.++.+++.        ++.++.|..        +.+                    
T Consensus        24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~--------~v~~~~vd~--------~~~--------------------   67 (112)
T d1f9ma_          24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--------DVIFLKLDC--------NQE--------------------   67 (112)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEEC--------SST--------------------
T ss_pred             CCCEEEEEEEcCCCcchHHHHHHHhhhccccc--------cceeecccc--------ccc--------------------
Confidence            348999999999999999887  888777663        355555543        110                    


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                            ...+.+.|+|+++|+++++ ++|+++.+
T Consensus        68 ------~~~l~~~~~V~~~Pt~~~~-k~G~~v~~   94 (112)
T d1f9ma_          68 ------NKTLAKELGIRVVPTFKIL-KENSVVGE   94 (112)
T ss_dssp             ------THHHHHHHCCSSSSEEEEE-ETTEEEEE
T ss_pred             ------chhhHhheeeccCCEEEEE-ECCEEEEE
Confidence                  0236678999999999999 69999864

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.61  E-value=7.5e-09  Score=83.74  Aligned_cols=66  Identities=17%  Similarity=0.191  Sum_probs=46.1

Q ss_pred             CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311          346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL  423 (570)
Q Consensus       346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l  423 (570)
                      +|+.+++|||+||+||+...  +.++.++++       ....++.+..        |+                  ++  
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~-------~~~~~~~~~~--------d~------------------~~--   46 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMP-------DAVEVEYINV--------ME------------------NP--   46 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCS-------SSEEEEEEES--------SS------------------SC--
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccc-------cccccccccc--------cc------------------cc--
Confidence            58899999999999999988  777776653       2344554442        11                  11  


Q ss_pred             cChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                             .+.++|+|+++||+ +++.+|+.+
T Consensus        47 -------~la~~~~V~~~Pt~-~i~~~g~~~   69 (85)
T d1fo5a_          47 -------QKAMEYGIMAVPTI-VINGDVEFI   69 (85)
T ss_dssp             -------CTTTSTTTCCSSEE-EETTEEECC
T ss_pred             -------cccccCCceEeeEE-EEECCcEEE
Confidence                   14567999999996 567777643

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.9e-08  Score=87.90  Aligned_cols=68  Identities=7%  Similarity=0.053  Sum_probs=53.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+|+|+|+|||+||+||+...  |.++-++++       +.+.++-|.+        |+.                  | 
T Consensus        21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~-------~~v~~~~VDv--------d~~------------------~-   66 (137)
T d1qgva_          21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK-------NFAVIYLVDI--------TEV------------------P-   66 (137)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT-------TTEEEEEEET--------TTC------------------C-
T ss_pred             CCCEEEEEEECCCCccchhcChHHHHHHHHhh-------ccceEEEeec--------ccc------------------c-
Confidence            468999999999999999998  999988885       2477777764        111                  1 


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                              .+.+.|+|+++||++++ .+|+.+.
T Consensus        67 --------~la~~~~I~~~PT~~~f-~~g~~i~   90 (137)
T d1qgva_          67 --------DFNKMYELYDPCTVMFF-FRNKHIM   90 (137)
T ss_dssp             --------TTTTSSCSCSSCEEEEE-ETTEEEE
T ss_pred             --------hhhhhcCeeeEEEEEEE-eCCcEEE
Confidence                    15667999999999999 5777664

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4e-08  Score=85.93  Aligned_cols=22  Identities=5%  Similarity=-0.108  Sum_probs=20.5

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH
Q 008311          344 LRRKNVLLLISDLDISQEELSI  365 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~  365 (570)
                      -.||+|+|+|||+||+||+.+.
T Consensus        23 ~~~Kpvlv~F~a~wC~~C~~~~   44 (135)
T d1sena_          23 ASGLPLMVIIHKSWCGACKALK   44 (135)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHH
T ss_pred             HcCCcEEEEEEecCCCCceecc
Confidence            4699999999999999999988

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.53  E-value=3.7e-08  Score=85.72  Aligned_cols=71  Identities=11%  Similarity=0.200  Sum_probs=47.2

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311          344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP  421 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP  421 (570)
                      -.+++|+|+|||.|||||+...  |.++.+++.      +.++.++.|..        |+                    
T Consensus        28 ~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~------~~~~~~~~Vd~--------d~--------------------   73 (119)
T d2es7a1          28 VGDGVILLSSDPRRTPEVSDNPVMIAELLREFP------QFDWQVAVADL--------EQ--------------------   73 (119)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTCT------TSCCEEEEECH--------HH--------------------
T ss_pred             CCCcEEEEeecCCCCccHHHHHHHHHHHHHhcC------CCceEEEEEEC--------CC--------------------
Confidence            3567999999999999999998  888888774      23465555542        11                    


Q ss_pred             cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                             ...+.++|+|+++|+++++ ++|+.+.+
T Consensus        74 -------~~~l~~~~~V~~~Pt~~~~-~~G~~v~~  100 (119)
T d2es7a1          74 -------SEAIGDRFNVRRFPATLVF-TDGKLRGA  100 (119)
T ss_dssp             -------HHHHHHTTTCCSSSEEEEE-SCC----C
T ss_pred             -------CHHHHHhcCcCcceEEEEE-EcCeEEEE
Confidence                   1247788999999999999 68998865

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.45  E-value=1.8e-07  Score=83.25  Aligned_cols=70  Identities=13%  Similarity=0.128  Sum_probs=59.5

Q ss_pred             cccccccCCeEEEEEecCC-CchHHHHHHHHHHHHhh--CCCCEEEEEEecCCchhhhhhccccccccccccC
Q 008311          498 LVLDWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANT--ARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTS  567 (570)
Q Consensus       498 ~i~~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~--~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~  567 (570)
                      .+.-..++||+|.|||.+. |+||++|.|.|.++|++  .+..||+++|+.|++++.++++++...+..+++.
T Consensus        20 ~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~   92 (144)
T d1i5ga_          20 DIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFE   92 (144)
T ss_dssp             EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTT
T ss_pred             EeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeE
Confidence            3444567999999999999 99999999999999975  3468999999999999999998888877666553

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=2.7e-08  Score=88.36  Aligned_cols=70  Identities=13%  Similarity=0.118  Sum_probs=52.7

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++++|+|.|||.|||||+...  |.++-+++.      +..+.+.-|..        |.                     
T Consensus        35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~------~~~~~~a~Vd~--------d~---------------------   79 (132)
T d2hfda1          35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFP------DYTWQVAIADL--------EQ---------------------   79 (132)
T ss_dssp             SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCT------TSCEEEEEECH--------HH---------------------
T ss_pred             CCcEEEEEeeCCCChhHHHHHHHHHHHHHHcc------CCcceeEEEEe--------cC---------------------
Confidence            457999999999999999887  888877764      23455555542        11                     


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                            ...+.+.|+|+++||++++ ++|+.+.+
T Consensus        80 ------~~~la~~~~V~~~PT~~~~-~~G~~v~~  106 (132)
T d2hfda1          80 ------SEAIGDRFGVFRFPATLVF-TGGNYRGV  106 (132)
T ss_dssp             ------HHHHHHHHTCCSCCEEEEE-ETTEEEEE
T ss_pred             ------CHHHHHhhccCcceeEEEE-EcCcEeee
Confidence                  1347788999999999999 88988764

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.33  E-value=1.4e-07  Score=76.54  Aligned_cols=62  Identities=13%  Similarity=0.101  Sum_probs=44.7

Q ss_pred             EEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccccCh
Q 008311          349 VLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDR  426 (570)
Q Consensus       349 VlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D~  426 (570)
                      .+..|||+||+||+...  +.++.+++.       ++++++-|++        |+.                        
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~-------~~v~~~~vd~--------d~~------------------------   44 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFG-------DKIDVEKIDI--------MVD------------------------   44 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHC-------SSCCEEEECT--------TTC------------------------
T ss_pred             EEEEEECCCCcchHHHHHHHhhhccccc-------cccccccccc--------ccc------------------------
Confidence            34569999999999998  888888874       3577887764        211                        


Q ss_pred             HHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          427 AVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       427 ~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                         ..+.++|+|+++|+++ ++.+|+.
T Consensus        45 ---~~l~~~~~V~~~Pt~~-~~~~~~~   67 (85)
T d1nhoa_          45 ---REKAIEYGLMAVPAIA-INGVVRF   67 (85)
T ss_dssp             ---GGGGGGTCSSCSSEEE-ETTTEEE
T ss_pred             ---hhhHHhcCceEeCEEE-ECCcEEE
Confidence               1256679999999865 5665543

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2.5e-08  Score=85.39  Aligned_cols=69  Identities=7%  Similarity=0.068  Sum_probs=47.5

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++|+|+++|||+||+||+...  +.++.++++.    .+.++.++-|..        +.                  ++ 
T Consensus        23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~----~~~~v~~~~vd~--------~~------------------~~-   71 (120)
T d1meka_          23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKA----EGSEIRLAKVDA--------TE------------------ES-   71 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTT----TCCCCBCEEEET--------TT------------------CC-
T ss_pred             cCCcEEEEEECCCcCCccccchhhhhhcccccc----cccceeeecccc--------cc------------------ch-
Confidence            479999999999999999877  7888877752    122344444432        10                  11 


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRV  453 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV  453 (570)
                              .+.++|+|+++||++++ ++|+.
T Consensus        72 --------~l~~~~~i~~~Pt~~~~-~~G~~   93 (120)
T d1meka_          72 --------DLAQQYGVRGYPTIKFF-RNGDT   93 (120)
T ss_dssp             --------SSHHHHTCCSSSEEEEE-ESSCS
T ss_pred             --------hHHHHhCCccCCeEEEE-ECCeE
Confidence                    14567899999999888 45544

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=9.2e-07  Score=75.79  Aligned_cols=68  Identities=10%  Similarity=-0.066  Sum_probs=51.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      .+|.|+|+|+|+||+||+.+.  +.++.++++      ++++.|.-|.+        +.                     
T Consensus        26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~------~~~v~~~~vd~--------~~---------------------   70 (119)
T d2b5ea4          26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLV------EKNITLAQIDC--------TE---------------------   70 (119)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTT------TTTCEEEEEET--------TT---------------------
T ss_pred             cCCeEEEEEECCccCcccccchhhhhhhhhhc------ccceeeeeeec--------cc---------------------
Confidence            468999999999999999988  888887774      23566666653        10                     


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                            ...+.++|+|+++|+++++ ++|+..
T Consensus        71 ------~~~l~~~~~v~~~Pti~~f-~~g~~~   95 (119)
T d2b5ea4          71 ------NQDLCMEHNIPGFPSLKIF-KNSDVN   95 (119)
T ss_dssp             ------CHHHHHHTTCCSSSEEEEE-ETTCTT
T ss_pred             ------hHHHHHHhccccCCeEEEE-ECCEEe
Confidence                  0236778999999999998 666553

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.24  E-value=1e-06  Score=73.22  Aligned_cols=67  Identities=9%  Similarity=-0.024  Sum_probs=47.8

Q ss_pred             ccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311          343 VLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH  420 (570)
Q Consensus       343 ~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f  420 (570)
                      .++|.+.++.|+++|||||+...  |.++-.+.        .++++..|..        ++                  +
T Consensus        12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~--------~~i~~~~vd~--------~~------------------~   57 (96)
T d1hyua4          12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLN--------PRIKHTAIDG--------GT------------------F   57 (96)
T ss_dssp             HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC--------TTEEEEEEET--------TT------------------C
T ss_pred             hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhC--------CceEEEEEec--------cc------------------c
Confidence            56788999999999999999887  66554332        3577776653        11                  1


Q ss_pred             ccccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311          421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS  455 (570)
Q Consensus       421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~  455 (570)
                               ..+.+.|+|+++||+++   +|+.+.
T Consensus        58 ---------~~l~~~~~I~~vPt~~~---ng~~~~   80 (96)
T d1hyua4          58 ---------QNEITERNVMGVPAVFV---NGKEFG   80 (96)
T ss_dssp             ---------HHHHHHTTCCSSSEEEE---TTEEEE
T ss_pred             ---------hHHHhhcccccccEEEE---CCEEEE
Confidence                     13567799999999865   777664

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.9e-06  Score=77.27  Aligned_cols=71  Identities=17%  Similarity=0.216  Sum_probs=47.4

Q ss_pred             cCCCEEEEEEecCCCHHhHHHH-----HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311          344 LRRKNVLLLISDLDISQEELSI-----LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV  418 (570)
Q Consensus       344 LkGKvVlL~FwAsWCpPCr~e~-----L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV  418 (570)
                      -++|+|+|+|++.||++|+.+-     =.++.+-+++       +|-++.|.+       .+++                
T Consensus        40 ~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~-------~fV~~~v~~-------~~~e----------------   89 (147)
T d2dlxa1          40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-------HFIFWQVYH-------DSEE----------------   89 (147)
T ss_dssp             HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-------TEEEEEEES-------SSHH----------------
T ss_pred             HcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh-------heeEeeecc-------cchh----------------
Confidence            3689999999999999998764     2333333331       354444442       1111                


Q ss_pred             ccccccChHHHHHHHHhCCCCCCceEEEECCC-CcEE
Q 008311          419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQ-GRVV  454 (570)
Q Consensus       419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpq-GkVv  454 (570)
                                ...+.+.|++.++|++++|||. |+++
T Consensus        90 ----------~~~~~~~y~v~~~Pti~~idp~~ge~v  116 (147)
T d2dlxa1          90 ----------GQRYIQFYKLGDFPYVSILDPRTGQKL  116 (147)
T ss_dssp             ----------HHHHHHHHTCCSSSEEEEECTTTCCCC
T ss_pred             ----------hhhhhhheecCceeEEEEEeCCCCeEe
Confidence                      1235677999999999999984 7654

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=4.9e-07  Score=79.49  Aligned_cols=31  Identities=13%  Similarity=0.048  Sum_probs=27.0

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhh
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRL  375 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~  375 (570)
                      .+|.|+|+|||+||++|+.+.  +.++.+.+++
T Consensus        29 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~   61 (140)
T d2b5ea1          29 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYAN   61 (140)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEeccCcccchhHHHHHHHHHHHhc
Confidence            368999999999999999998  8888887763

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.95  E-value=4.5e-06  Score=70.25  Aligned_cols=31  Identities=13%  Similarity=-0.055  Sum_probs=27.5

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhh
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRL  375 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~  375 (570)
                      .+|.|+|+|||+||+||+.+.  +.++.++++.
T Consensus        19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~   51 (116)
T d2djja1          19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAK   51 (116)
T ss_dssp             TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEecccccccccchHHHHHHHHHhc
Confidence            468999999999999999998  8888888863

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.92  E-value=1.3e-05  Score=68.91  Aligned_cols=75  Identities=9%  Similarity=0.069  Sum_probs=52.6

Q ss_pred             CCCEEEEEEecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccccc
Q 008311          345 RRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLI  424 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~  424 (570)
                      +.|.|++.|+|+||++|+...+.++.+++++    ...++.|.-|.+.|.     +                        
T Consensus        18 ~~~~~lV~Fya~wC~~ck~p~f~kla~~~~~----~~~~v~ia~Vd~~~~-----~------------------------   64 (122)
T d2c0ga2          18 RFPYSVVKFDIASPYGEKHEAFTAFSKSAHK----ATKDLLIATVGVKDY-----G------------------------   64 (122)
T ss_dssp             TSSEEEEEEEESSCCSHHHHHHHHHHHHHHH----HCSSEEEEEEEECSS-----T------------------------
T ss_pred             cCCcEEEEEECCCCCcccCHHHHHHHHHHHH----hCCCeEEEecccccc-----c------------------------
Confidence            4589999999999999998668888888764    234666666665221     0                        


Q ss_pred             ChHHHHHHHHhCCC--CCCceEEEECCCCcE
Q 008311          425 DRAVIRYVKDVWHF--KNKPILVVLDPQGRV  453 (570)
Q Consensus       425 D~~~~~~L~~~y~V--~~IPtlVVLDpqGkV  453 (570)
                       ......+.++|++  +++||++++.+.+..
T Consensus        65 -~~~n~~l~~~~~i~~~~~PTi~~f~~g~~~   94 (122)
T d2c0ga2          65 -ELENKALGDRYKVDDKNFPSIFLFKGNADE   94 (122)
T ss_dssp             -TCTTHHHHHHTTCCTTSCCEEEEESSSSSS
T ss_pred             -cccCHHHHHHhhcccCCCCcEEEEeCCccc
Confidence             0012346778887  579999999866543

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=97.85  E-value=1.5e-05  Score=69.96  Aligned_cols=68  Identities=18%  Similarity=0.147  Sum_probs=56.7

Q ss_pred             ccccccCCeEEEEEecCC-CchHHHHHHHHHHHHhh--CCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          499 VLDWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANT--ARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       499 i~~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~--~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +.-...+||+|.|||.+. |++|+++.|.|.++|++  .+..|+++.|+.|++.+..++.++......++.
T Consensus        21 v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~   91 (144)
T d1o73a_          21 VSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPF   91 (144)
T ss_dssp             BCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred             EeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceee
Confidence            443457999999999888 99999999999999976  466899999999999988888777666555544

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=8e-05  Score=66.81  Aligned_cols=108  Identities=11%  Similarity=0.038  Sum_probs=66.5

Q ss_pred             cCCCCCeeecccc-CCCEEEEEEe-cCCCHHhHHHH---HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          332 DGSTKRRVNIEVL-RRKNVLLLIS-DLDISQEELSI---LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       332 ~g~~G~~Vsls~L-kGKvVlL~Fw-AsWCpPCr~e~---L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      ++.+|++++++++ +||.|+|+|. +.|+|.|-.+.   ..+.|+++++   +  ..-+|+.+|+ |     ++...+.|
T Consensus        16 ~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~---~--g~~~i~~~s~-~-----~~~~~~~~   84 (161)
T d1hd2a_          16 EGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKA---K--GVQVVACLSV-N-----DAFVTGEW   84 (161)
T ss_dssp             CSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHT---T--TCCEEEEEES-S-----CHHHHHHH
T ss_pred             ecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHH---c--CCeEEEEEec-C-----chhhhhhh
Confidence            4566899999985 8998888888 77899995544   6677777763   1  2235666775 2     34444555


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCCC----C--------CceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK----N--------KPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~----~--------IPtlVVLDpqGkVv~~  456 (570)
                      .... ..+   .+||.+.|.  ...+.+.||+.    +        .-..++|+++|+|...
T Consensus        85 ~~~~-~~~---~~~~llsD~--~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~  140 (161)
T d1hd2a_          85 GRAH-KAE---GKVRLLADP--TGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKAL  140 (161)
T ss_dssp             HHHT-TCT---TTCEEEECT--TCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEE
T ss_pred             hhhc-ccc---cccccccCC--cceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEE
Confidence            4322 111   123334454  34577778762    1        1245777779998753

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.46  E-value=0.00011  Score=63.74  Aligned_cols=69  Identities=17%  Similarity=0.176  Sum_probs=55.2

Q ss_pred             CccccccccCCeEEEEEecCC-CchHHHHHHHHHHHHhh--CCCCEEEEEEecCCchhhhhhcccccccccc
Q 008311          496 DPLVLDWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANT--ARIPLEMVYVGKSTKRDKCGESWQPLQLKSL  564 (570)
Q Consensus       496 d~~i~~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~--~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~  564 (570)
                      +..+.-..++||.+.|||.+. |++|+.+.+.+.++|++  ....+++++|+.|++.+.++..+......++
T Consensus        16 g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~   87 (144)
T d1o8xa_          16 DGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAV   87 (144)
T ss_dssp             TEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEEC
T ss_pred             CCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccce
Confidence            345555578999999999888 99999999999999976  4457999999999987777766655444443

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.34  E-value=0.00013  Score=62.39  Aligned_cols=90  Identities=13%  Similarity=0.136  Sum_probs=52.6

Q ss_pred             CCcccCCCCCeeeccc--c-----CCCEEEEEEecCCCHHhHHH---H-HHHHHHHHhhhhhccCCCeEEEEEecccCCC
Q 008311          328 QPLVDGSTKRRVNIEV--L-----RRKNVLLLISDLDISQEELS---I-LEQIYNESRLHLTRQESHYEVVWIPIVDHFI  396 (570)
Q Consensus       328 ~pl~~g~~G~~Vsls~--L-----kGKvVlL~FwAsWCpPCr~e---~-L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~  396 (570)
                      .|.++|.+. -+.+.+  |     +.+.|+++|+|.||+.|...   . +...++......  .+.++.|.-|..     
T Consensus         4 ~p~~d~~~~-V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~--~~~~v~~a~Vd~-----   75 (124)
T d1a8ya1           4 FPEYDGVDR-VINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVL--EDKGVGFGLVDS-----   75 (124)
T ss_dssp             CCCCCCCCC-CEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHT--GGGTEEEEEEET-----
T ss_pred             CCccCCCCc-cEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHh--ccCCeEEEEEEe-----
Confidence            455655432 344432  2     46899999999999865421   1 445555442211  122454444442     


Q ss_pred             CCChhhHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311          397 HWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       397 ~w~D~~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~  456 (570)
                         +.                           ...+.++|+|++.||++++. +|+++..
T Consensus        76 ---~~---------------------------~~~l~~~~~I~~yPTi~~f~-~g~~~~y  104 (124)
T d1a8ya1          76 ---EK---------------------------DAAVAKKLGLTEEDSIYVFK-EDEVIEY  104 (124)
T ss_dssp             ---TT---------------------------SHHHHHTTTCCSTTCEEEEE-SSSEEEC
T ss_pred             ---ec---------------------------ccchhhccccccCCcEEEec-cCccEEe
Confidence               11                           12367789999999998885 5777643

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=0.00023  Score=59.24  Aligned_cols=33  Identities=21%  Similarity=0.166  Sum_probs=22.9

Q ss_pred             CCCCCeeecccc-CCCEEEEEEecCCCHHhHHHH
Q 008311          333 GSTKRRVNIEVL-RRKNVLLLISDLDISQEELSI  365 (570)
Q Consensus       333 g~~G~~Vsls~L-kGKvVlL~FwAsWCpPCr~e~  365 (570)
                      |+.|..-+++.- ..-++++.||+.||++|+..-
T Consensus         1 ~~~~~~~~~~~~~~~~p~i~lft~~~C~~C~~a~   34 (100)
T d1wjka_           1 GSSGSSGNLSASNRALPVLTLFTKAPCPLCDEAK   34 (100)
T ss_dssp             CCCCCCCCCCCSCCCCCEEEEEECSSCHHHHHHH
T ss_pred             CCCCCCCCchhcCCCCCEEEEEECCCCCChHHHH
Confidence            344554555443 445678889999999999765

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.24  E-value=0.00016  Score=68.26  Aligned_cols=91  Identities=15%  Similarity=0.132  Sum_probs=59.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT  422 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~  422 (570)
                      ++.+|++.||++||++|+..-  |.++-.++.        +..++-|..          +.       .  |        
T Consensus       119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~--------~vkF~ki~~----------~~-------~--~--------  163 (217)
T d2trcp_         119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--------MVKFCKIRA----------SN-------T--G--------  163 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--------TSEEEEEEH----------HH-------H--T--------
T ss_pred             CCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc--------cceEEEEcc----------cc-------c--h--------
Confidence            456899999999999999866  666655442        344555542          10       0  1        


Q ss_pred             ccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhhc
Q 008311          423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEE  484 (570)
Q Consensus       423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e~  484 (570)
                               +...|+++++|+++++ ++|+++.. -+.+... |++.  |+....+.++.+.
T Consensus       164 ---------~~~~~~i~~lPtl~~y-k~G~~v~~-~vg~~~~-~g~~--~~~~~lE~~L~~~  211 (217)
T d2trcp_         164 ---------AGDRFSSDVLPTLLVY-KGGELISN-FISVAEQ-FAED--FFAADVESFLNEY  211 (217)
T ss_dssp             ---------CSTTSCGGGCSEEEEE-ETTEEEEE-ETTGGGG-SCSS--CCHHHHHHHHHTT
T ss_pred             ---------hHHhCCCCCCCeEEEE-ECCEEEEE-EECcccc-cccc--CCHHHHHHHHHHc
Confidence                     1124788899999999 78998864 2232223 3333  7888888877653

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00066  Score=57.92  Aligned_cols=63  Identities=13%  Similarity=0.130  Sum_probs=52.6

Q ss_pred             cCCeEEEEEecCC--------CchHHHHHHHHHHHHhhCCCCEEEEEEecCC------chhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD--------VEWVRKFTTAARSVANTARIPLEMVYVGKST------KRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad--------~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~------~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+||.|.+||.|+        |+|||.+.|.+.+++++.+.++.++.|.-++      +...+++.+++-++||+++
T Consensus        19 ~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~V~~iPT~i~   95 (119)
T d1woua_          19 HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLK   95 (119)
T ss_dssp             TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEEEE
T ss_pred             cCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCCeEEEEEEEE
Confidence            4789999999664        9999999999999998877789999888754      3446778899999999874

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=96.92  E-value=0.0017  Score=57.84  Aligned_cols=105  Identities=13%  Similarity=0.122  Sum_probs=65.9

Q ss_pred             CCCCCeeeccc-cCCCEEEEEEe-cCCCHHhHHHH---HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311          333 GSTKRRVNIEV-LRRKNVLLLIS-DLDISQEELSI---LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE  407 (570)
Q Consensus       333 g~~G~~Vsls~-LkGKvVlL~Fw-AsWCpPCr~e~---L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~  407 (570)
                      +.+++++++++ ++||.|+|+|. +-|.|.|-.+.   ..+.++.+++     ....+|+.||+ |     ++.....|.
T Consensus        21 ~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~-----~g~~~v~~isv-d-----~~~~~~~~~   89 (162)
T d1tp9a1          21 QDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKS-----KGVTEILCISV-N-----DPFVMKAWA   89 (162)
T ss_dssp             TSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHH-----TTCCCEEEEES-S-----CHHHHHHHH
T ss_pred             CCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHH-----cCCcceeeeec-c-----chhhhhhhh
Confidence            44567899987 59999888877 77899997665   4555666653     23568889996 2     355556665


Q ss_pred             HHHc-CCCceeeccccccChHHHHHHHHhCCCC------C-----CceEEEECCCCcEEcc
Q 008311          408 TLQS-SMPWYTVYHPTLIDRAVIRYVKDVWHFK------N-----KPILVVLDPQGRVVSP  456 (570)
Q Consensus       408 ~~~~-~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~-----IPtlVVLDpqGkVv~~  456 (570)
                      .... ..+     ++.+.|.  ...+.+.|++.      +     .=.++||| +|+|...
T Consensus        90 ~~~~~~~~-----~~~lsD~--~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~  142 (162)
T d1tp9a1          90 KSYPENKH-----VKFLADG--SATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAA  142 (162)
T ss_dssp             HTCTTCSS-----EEEEECT--TSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEE
T ss_pred             hhcccccc-----cccccch--hhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEE
Confidence            4222 222     2223343  34567778753      1     11367889 8988763

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00095  Score=54.98  Aligned_cols=62  Identities=8%  Similarity=0.019  Sum_probs=54.6

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..+|.+.+||.++ |+|||.+.+.+.+++++.+.++.++.+..|... .+.+.+++-++||+++
T Consensus        18 ~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~-~l~~~~~v~~~PT~~~   80 (108)
T d2trxa_          18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-GTAPKYGIRGIPTLLL   80 (108)
T ss_dssp             TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCT-THHHHTTCCSSSEEEE
T ss_pred             hCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchh-hHHHHhCCCcEEEEEE
Confidence            4578999999999 999999999999999888899999999888664 5777889999999875

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.88  E-value=0.00094  Score=55.56  Aligned_cols=61  Identities=10%  Similarity=0.028  Sum_probs=53.4

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .||.|.++|.++ |++|+.+.|.+.+++++.+..+.++.|..|...+ +.+.+++-.+||+++
T Consensus        24 ~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~-l~~~~~V~~~Pt~~~   85 (111)
T d1xwaa_          24 SGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECED-IAMEYNISSMPTFVF   85 (111)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH-HHHHTTCCSSSEEEE
T ss_pred             CCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcc-hhhcCCCccccEEEE
Confidence            689999999999 9999999999999998877788999998887665 566788899999864

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.84  E-value=0.0011  Score=54.28  Aligned_cols=64  Identities=13%  Similarity=0.112  Sum_probs=50.3

Q ss_pred             cCCeEEEEEe-cCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          504 KEGKYIFLYG-GDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       504 ~egk~I~lYf-gad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      ++|.+..++| +..|++|+.+.|.+.+++.+ ..++.+..|..+...+-..+ +++.++||++++|+
T Consensus        13 l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~-~~~i~~~~vd~~~~~~l~~~-~~I~~vPt~~~ng~   77 (96)
T d1hyua4          13 IDGDFEFETYYSLSCHNCPDVVQALNLMAVL-NPRIKHTAIDGGTFQNEITE-RNVMGVPAVFVNGK   77 (96)
T ss_dssp             CCSCEEEEEEECTTCSSHHHHHHHHHHHHHH-CTTEEEEEEETTTCHHHHHH-TTCCSSSEEEETTE
T ss_pred             cCCCeEEEEEECCCCcchHHHHHHHHHHHHh-CCceEEEEEecccchHHHhh-cccccccEEEECCE
Confidence            3566555544 55599999999999999765 56788888988887665554 69999999999886

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=96.84  E-value=0.00033  Score=58.87  Aligned_cols=63  Identities=10%  Similarity=-0.033  Sum_probs=53.5

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..++|.+.++|.++ |++|+.+.|.+.+++++.+.++.++.|..|+..+ +.+.+++-.+||+++
T Consensus        21 ~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~-l~~~~~v~~~Pt~~~   84 (112)
T d1ep7a_          21 KEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAA-VAEAAGITAMPTFHV   84 (112)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHH-HHHHHTCCBSSEEEE
T ss_pred             hhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeecccccc-ccccccccCCCEEEE
Confidence            45789999999988 9999999999999998877789999999987765 445578889999765

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.82  E-value=0.0003  Score=59.21  Aligned_cols=63  Identities=10%  Similarity=0.217  Sum_probs=48.5

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCch-----hhhhhcccccccccccc
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKR-----DKCGESWQPLQLKSLVT  566 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~-----e~~~~~~~~~~~~~~~~  566 (570)
                      .+.+++.+.+|||+. |++||.|.|.+.+++++.+..  +++|..+...     ..+.+.+++...||++.
T Consensus        22 ~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~--v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli~   90 (115)
T d1zmaa1          22 ALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH--IYFINSEEPSQLNDLQAFRSRYGIPTVPGFVH   90 (115)
T ss_dssp             HHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC--CEEEETTCGGGHHHHHHHHHHHTCCSSCEEEE
T ss_pred             HHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh--hhhheeecccccccccccccccccccccEEEE
Confidence            356788999999988 999999999999998876655  4555554332     25777788888898864

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.78  E-value=0.00063  Score=53.76  Aligned_cols=63  Identities=13%  Similarity=0.117  Sum_probs=50.9

Q ss_pred             CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      +|..-+||.++ |++||.+.|.+.+++++.+..+.++.+..|...+ .-+.+++.++||+++.|+
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~-la~~~~V~~~Pt~~i~~~   65 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ-KAMEYGIMAVPTIVINGD   65 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC-TTTSTTTCCSSEEEETTE
T ss_pred             CceEEEEEECCCCcChHhhhhhcccccccccccccccccccccccc-ccccCCceEeeEEEEECC
Confidence            35667788888 9999999999999998877778888887776655 445679999999988763

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=96.69  E-value=0.0012  Score=54.44  Aligned_cols=61  Identities=7%  Similarity=0.043  Sum_probs=53.2

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+|.+.++|.++ |++|+.+.|.+.++.++.+.++.++.|..|...+ +.+-+++-++||+++
T Consensus        18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~-l~~~~~V~~~Pt~~~   79 (107)
T d1dbya_          18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN-VASEYGIRSIPTIMV   79 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHHTCCSSCEEEE
T ss_pred             CCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchh-HHHHhcccceEEEEE
Confidence            568899999999 9999999999999988888899999999988665 556688999999875

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0019  Score=56.57  Aligned_cols=62  Identities=11%  Similarity=0.087  Sum_probs=53.8

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .++|.+.++|+++ |++|+.+.|.+.+++++.+..+.++.|.-|... .+.+.+++-++||+++
T Consensus        20 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~-~la~~~~I~~~PT~~~   82 (137)
T d1qgva_          20 EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVP-DFNKMYELYDPCTVMF   82 (137)
T ss_dssp             CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCC-TTTTSSCSCSSCEEEE
T ss_pred             CCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccc-hhhhhcCeeeEEEEEE
Confidence            4689999999999 999999999999999887778999999887655 5667888999999864

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=96.44  E-value=0.002  Score=52.71  Aligned_cols=63  Identities=8%  Similarity=0.076  Sum_probs=53.5

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +..+|.+.++|.+. |+||+.+.|.+.+++++.+..+.++.|.-|...+-. +-+++-++||+++
T Consensus        14 i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~-~~~~V~~~Pt~~~   77 (105)
T d1nw2a_          14 IQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETT-SQFGIMSIPTLIL   77 (105)
T ss_dssp             TTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHH-HHTTCCBSSEEEE
T ss_pred             HhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccH-HHCCcceeeEEEE
Confidence            45678899999999 999999999999999887778999999988876554 4578999999875

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=96.30  E-value=0.0029  Score=51.97  Aligned_cols=62  Identities=13%  Similarity=0.052  Sum_probs=51.9

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..+|.+.++|.+. |++|+.+.+.+.+++++.+..+.++.|..|...+ +.+-+++-.+||+++
T Consensus        18 ~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~-l~~~~~I~~~Pt~~~   80 (108)
T d1thxa_          18 KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT-TVKKYKVEGVPALRL   80 (108)
T ss_dssp             TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH-HHHHTTCCSSSEEEE
T ss_pred             hCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHH-HHHHhcccCCCEEEE
Confidence            3467888989888 9999999999999998878889999999887655 445578889999876

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.18  E-value=0.0023  Score=50.81  Aligned_cols=58  Identities=5%  Similarity=0.130  Sum_probs=48.1

Q ss_pred             EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      +|.+..|++|+++.|.+.+++++.+.+++++.|..|..++- .+.+++.++||+++.|+
T Consensus         7 ~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l-~~~~~V~~~Pt~~~~~~   64 (85)
T d1nhoa_           7 VFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREK-AIEYGLMAVPAIAINGV   64 (85)
T ss_dssp             EESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGG-GGGTCSSCSSEEEETTT
T ss_pred             EEECCCCcchHHHHHHHhhhcccccccccccccccccchhh-HHhcCceEeCEEEECCc
Confidence            44445599999999999999988777899999988876655 55678999999999875

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.15  E-value=0.0029  Score=52.94  Aligned_cols=62  Identities=6%  Similarity=0.046  Sum_probs=49.7

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ...+|.|.+||.++ |++|+.+.|.+.+++++-+ ++-++.|..|+..+-.+ .+++-.+||+++
T Consensus        25 ~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~-~~~~~~vd~~~~~~l~~-~~~V~~~Pt~~~   87 (114)
T d1xfla_          25 NESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVAS-DWAIQAMPTFMF   87 (114)
T ss_dssp             HHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSHHHHH-HTTCCSSSEEEE
T ss_pred             hccCCeEEEEEEcCCCCCccccccchhhhccccc-ccceeEEEeeeceeecc-ccceeeeEEEEE
Confidence            35689999999888 9999999999999987643 46778888877665544 478889998864

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.025  Score=50.20  Aligned_cols=104  Identities=6%  Similarity=-0.055  Sum_probs=58.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCCh---------hhHHHH-HHHHcC
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDD---------PTQKKF-ETLQSS  412 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D---------~~~~~F-~~~~~~  412 (570)
                      ..++++..|+..-||.|+.+.  +.++.++         .++.|+|+++--.. +++-         .++.++ ..+...
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~---------~~v~v~~~~~~~~~-~~s~~~a~a~~~a~~~~~~~~~~~~~  104 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQQARPWVDS---------GKVQLRTLLVGVIK-PESPATAAAILASKDPAKTWQQYEAS  104 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT---------TSEEEEEEECCCSS-TTHHHHHHHHHHSSSHHHHHHHHHHT
T ss_pred             CCCEEEEEEECCCCcchHHHHHHHHHHHhc---------cceeEEEEecccCC-cchHHHHHHHHhhhCHHHHHHHHHHh
Confidence            557889999999999999988  6555432         25888888862111 1110         111122 222111


Q ss_pred             CCceeeccccccChHH------HHHHHHhCCCCCCceEEEECCCCcEEcccc
Q 008311          413 MPWYTVYHPTLIDRAV------IRYVKDVWHFKNKPILVVLDPQGRVVSPNA  458 (570)
Q Consensus       413 MPW~aV~fP~l~D~~~------~~~L~~~y~V~~IPtlVVLDpqGkVv~~na  458 (570)
                      .-......+...+.+.      ...+.+.+|++|.|++|+.|++|++....|
T Consensus       105 ~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G  156 (169)
T d1v58a1         105 GGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVG  156 (169)
T ss_dssp             TTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEES
T ss_pred             hhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecC
Confidence            1000001111112221      224667899999999999999998754433

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.06  E-value=0.0036  Score=52.55  Aligned_cols=62  Identities=10%  Similarity=0.082  Sum_probs=52.3

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +.+++.+.+||.++ |++|+.+.|.+.+++++. .++.++.|..|+..+ +.+.+++.++||+++
T Consensus        23 ~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~d~~~~-l~~~~~V~~~Pt~~~   85 (113)
T d1r26a_          23 MSEDILTVAWFTAVWCGPCKTIERPMEKIAYEF-PTVKFAKVDADNNSE-IVSKCRVLQLPTFII   85 (113)
T ss_dssp             HHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHC-TTSEEEEEETTTCHH-HHHHTTCCSSSEEEE
T ss_pred             HcCCCeEEEEEECCCCccchhhceecccccccc-ccccccccccccchh-hHHHccccCCCEEEE
Confidence            35788999999999 999999999999998774 378888898887654 677889999999875

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.91  E-value=0.0035  Score=53.51  Aligned_cols=58  Identities=12%  Similarity=0.048  Sum_probs=47.4

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQL  561 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~  561 (570)
                      ...||.+-|||.+. |++|+...|.+.+++++ ...+.++.|+.+++.+.+++.++..++
T Consensus        21 ~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~-~~~v~~v~v~~~~~~~~~~~~~~~~~~   79 (134)
T d1lu4a_          21 SLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAA-NPAVTFVGIATRADVGAMQSFVSKYNL   79 (134)
T ss_dssp             GGTTSCEEEEEECTTCHHHHHHHHHHHHHHHH-CTTSEEEEEECSSCHHHHHHHHHHHTC
T ss_pred             HhCCCEEEEEEeecccCCceecchhHHHHhhh-hccccccccccccchhhhhhhhhhhcc
Confidence            46899999999777 99999999999999876 457889999988877777766655443

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=95.90  E-value=0.0057  Score=49.70  Aligned_cols=61  Identities=2%  Similarity=-0.059  Sum_probs=51.9

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+|.|.++|.+. |++|+.+.|.+.++.++.+..+.++.|..|+..+ ..+.+++-++||+++
T Consensus        16 ~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~-l~~~~~V~~~Pt~~~   77 (104)
T d1fb6a_          16 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG-IATQYNIRSIPTVLF   77 (104)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHTTCCSSSEEEE
T ss_pred             CCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchh-hhhhcceeeeeEEEE
Confidence            467789999888 9999999999999998888888999999987654 555678999999875

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0018  Score=55.29  Aligned_cols=64  Identities=6%  Similarity=-0.043  Sum_probs=47.2

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHh--hCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVAN--TARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~--~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..+||.|.|+|+++ |+|||.+.+.+.+..+  +...+|-++.|..++..+........-.+|++++
T Consensus        22 ~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~   88 (135)
T d1sena_          22 AASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILF   88 (135)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEE
T ss_pred             HHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEE
Confidence            46899999999999 9999999998765432  2456788888887766554444444445787654

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.82  E-value=0.0058  Score=49.81  Aligned_cols=62  Identities=6%  Similarity=0.041  Sum_probs=49.9

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +.+++.+.++|.++ |++|+.+.|.+.+++++.+ +..++.+..|...+ +.+.+++.++||+++
T Consensus        15 i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~-~~~~~~vd~d~~~~-~~~~~~V~~~Pt~i~   77 (103)
T d1syra_          15 ISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSE-VTEKENITSMPTFKV   77 (103)
T ss_dssp             HHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTTHH-HHHHTTCCSSSEEEE
T ss_pred             HhCCCcEEEEEeCCcccCcccccccchhhhhccc-ceEEEeeccccCcc-eeeeeeeecceEEEE
Confidence            34678999999888 9999999999999987743 45678888877665 455679999999876

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=95.77  E-value=0.0082  Score=49.86  Aligned_cols=62  Identities=10%  Similarity=0.088  Sum_probs=50.0

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ...+|.+.|+|.++ |++|+.+.|.+.++.++. .++.++.|..|+..+ +.+-+++-.+||+++
T Consensus        23 ~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~-~~~~~~~vd~d~~~~-l~~~~~I~~~Pt~~~   85 (113)
T d1ti3a_          23 KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF-PNVTFLKVDVDELKA-VAEEWNVEAMPTFIF   85 (113)
T ss_dssp             TTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHC-SSEEEEEEETTTCHH-HHHHHHCSSTTEEEE
T ss_pred             HcCCCEEEEEEEcCccccchhhhhhhhhhhccC-CCceEEeeeeecccc-ccccCeecccceEEE
Confidence            35789999999999 999999999999998774 357788888877664 455568888898864

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=95.72  E-value=0.0064  Score=50.78  Aligned_cols=61  Identities=5%  Similarity=-0.052  Sum_probs=48.8

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+|.+.+||.+. |++|+.+.|.+.+++++.. ++..+.|..|.....+.+.+++-.+||+++
T Consensus        24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~-~v~~~~vd~~~~~~~l~~~~~V~~~Pt~~~   85 (112)
T d1f9ma_          24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTFKI   85 (112)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSTTHHHHHHHCCSSSSEEEE
T ss_pred             CCCEEEEEEEcCCCcchHHHHHHHhhhccccc-cceeecccccccchhhHhheeeccCCEEEE
Confidence            457889999888 9999999999999988743 455666666655567778889999999875

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.029  Score=49.08  Aligned_cols=94  Identities=16%  Similarity=0.179  Sum_probs=52.2

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEE--ecccCCCC--------C-ChhhHHHHHHHHc
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWI--PIVDHFIH--------W-DDPTQKKFETLQS  411 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~I--sIvD~s~~--------w-~D~~~~~F~~~~~  411 (570)
                      .+|+|++-|+..-||.|+.+.  |.++-+          .+..++++  |+-.....        | .......|++...
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~----------~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   94 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNA----------LGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMA   94 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHH----------TTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhc----------cCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHh
Confidence            568999999999999999987  666522          13445554  43111000        0 0011222333322


Q ss_pred             --CCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311          412 --SMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV  454 (570)
Q Consensus       412 --~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv  454 (570)
                        .++.-...-    ..+....+.+.+||+|.|++|+.  +|+++
T Consensus        95 ~~~~~~~~~~~----~i~~~~~la~~lgv~GTPt~~~~--nG~~v  133 (156)
T d1eeja1          95 GKSVAPASCDV----DIADHYALGVQLGVSGTPAVVLS--NGTLV  133 (156)
T ss_dssp             TCCCCCCCCSC----CHHHHHHHHHHHTCCSSSEEECT--TSCEE
T ss_pred             ccccchhhhcc----hHHHHHHHHHHcCCcCCCEEEEe--CCeEe
Confidence              222111111    12345578899999999997764  57765

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.39  E-value=0.0088  Score=50.51  Aligned_cols=60  Identities=15%  Similarity=-0.012  Sum_probs=47.6

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKS  563 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~  563 (570)
                      ...||.+.|+|-+. |++|++..|.+.+++++. .+..++.|+.+++.+..++.++-.+++.
T Consensus        22 ~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~-~~~~~v~v~~~d~~~~~~~~~~~~~~~~   82 (134)
T d1zzoa1          22 SLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASH-PEVTFVGVAGLDQVPAMQEFVNKYPVKT   82 (134)
T ss_dssp             GGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCHHHHHHHHHHTTCTT
T ss_pred             HhCCCEEEEEecccccCcccccchhhHHHHhhh-cccccccccccccchhHHHHHHhcCCcc
Confidence            46899999988666 999999999999999873 4577888888887777777666655543

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.0074  Score=49.87  Aligned_cols=63  Identities=16%  Similarity=0.079  Sum_probs=43.7

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHH---HHHHhhC-CCCEEEEEEecCCc-hhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAA---RSVANTA-RIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~-~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~  566 (570)
                      .+||.|.|+|+++ |+||+.+.+.+   .++++.. +..+-.+.+..+.+ ...+.+.+++.++|++++
T Consensus        20 ~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~   88 (117)
T d2fwha1          20 AKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILF   88 (117)
T ss_dssp             HTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEE
T ss_pred             cCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceEEEE
Confidence            3689999999999 99999999886   4555443 22333333333333 335677889999999874

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=95.27  E-value=0.016  Score=51.45  Aligned_cols=62  Identities=16%  Similarity=0.033  Sum_probs=50.2

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCC-chhhhhhccccccccc
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKST-KRDKCGESWQPLQLKS  563 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~  563 (570)
                      ..+.||.+.|||-+. |++|+...+.+.+.|++ .+..+++++|+-|. +.++.++.++...++.
T Consensus        52 ~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~  116 (176)
T d1jfua_          52 SDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTR  116 (176)
T ss_dssp             GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCT
T ss_pred             HHhCCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcc
Confidence            346899999999777 99999999999999975 67889999999774 5566776666665544

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=95.23  E-value=0.027  Score=49.88  Aligned_cols=106  Identities=10%  Similarity=0.007  Sum_probs=56.7

Q ss_pred             cCCCCCeeecccc-CCCEEEEEE-ecCCCHHhHHHH--HHHHHH-HHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311          332 DGSTKRRVNIEVL-RRKNVLLLI-SDLDISQEELSI--LEQIYN-ESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF  406 (570)
Q Consensus       332 ~g~~G~~Vsls~L-kGKvVlL~F-wAsWCpPCr~e~--L~~iY~-elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F  406 (570)
                      .|...+.++++++ +||.|+|+| =+-+.|.|-.+.  ...-+. ..+.     +..-+|+.++..|      ......|
T Consensus        16 ~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~-----~~~~~vv~~~s~d------~~~~~a~   84 (163)
T d1nm3a2          16 QGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKK-----YGVDDILVVSVND------TFVMNAW   84 (163)
T ss_dssp             ETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHH-----TTCCEEEEEESSC------HHHHHHH
T ss_pred             cCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhh-----hcccceeeeecCC------HHHHHHH
Confidence            3444468999995 998776655 466799999887  333332 2321     1233556665422      2223333


Q ss_pred             HHHHcCCCceeeccccccChHHHHHHHHhCCC-----------CCCceEEEECCCCcEEcc
Q 008311          407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHF-----------KNKPILVVLDPQGRVVSP  456 (570)
Q Consensus       407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V-----------~~IPtlVVLDpqGkVv~~  456 (570)
                      ........     ++.+.|.  ...+.+.|++           ...-.++|+| +|+|...
T Consensus        85 ~~~~~~~~-----~~llsD~--~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~  137 (163)
T d1nm3a2          85 KEDEKSEN-----ISFIPDG--NGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKM  137 (163)
T ss_dssp             HHHTTCTT-----SEEEECT--TSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEE
T ss_pred             hhhhccCc-----eeeeccC--ChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEE
Confidence            22222222     2223343  2345555654           2344588888 9988653

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.14  E-value=0.022  Score=46.21  Aligned_cols=62  Identities=8%  Similarity=-0.009  Sum_probs=46.3

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhh----CCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANT----ARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~----~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+++..-++|.+. |+||+++.|.+.+++++    .+..+.++-+..+...+ ..+.+++.++||+++
T Consensus        13 ~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~-l~~~~~V~~vPTi~i   79 (107)
T d1a8la2          13 IDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE-WADQYNVMAVPKIVI   79 (107)
T ss_dssp             CCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH-HHHHTTCCSSCEEEE
T ss_pred             cCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccc-cccccccccceEEEE
Confidence            3455666667666 99999999999998743    45667777777766554 556678999999876

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.018  Score=46.90  Aligned_cols=60  Identities=7%  Similarity=-0.009  Sum_probs=48.0

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+|.+.++|++. |+||+.+.|.+.+++++.+ +...+.|..|...+ ..+.+++-++||+++
T Consensus        19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~-~~~~~~vd~d~~~~-~~~~~~V~~~Pt~~~   79 (105)
T d2ifqa1          19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDDCQD-VASECEVKCMPTFQF   79 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHH-HHHHTTCCBSSEEEE
T ss_pred             CCCEEEEEEEcCCccchhhhhhhhhhhccccc-cceeeecccccCHh-HHHHcCceEEEEEEE
Confidence            468899999999 9999999999999987644 34578888887655 455678889999875

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.027  Score=46.91  Aligned_cols=63  Identities=8%  Similarity=-0.001  Sum_probs=51.0

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +.+++.+.++|.+. |++|+.|.+.+.+++++. +..+-+.-|..++.. .+.+-+++.+.||+++
T Consensus        24 i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pti~~   88 (119)
T d2b5ea4          24 IQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQ-DLCMEHNIPGFPSLKI   88 (119)
T ss_dssp             HTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCH-HHHHHTTCCSSSEEEE
T ss_pred             HhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchH-HHHHHhccccCCeEEE
Confidence            34678899999888 999999999999999764 456888888887654 5666678999999876

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.87  E-value=0.019  Score=48.53  Aligned_cols=59  Identities=15%  Similarity=-0.016  Sum_probs=49.0

Q ss_pred             cccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhcccccc
Q 008311          502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQPLQ  560 (570)
Q Consensus       502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~~~  560 (570)
                      ...+||.+.|||-+. |++|+...+.+.+.+++ .+.++.++.|+.+++.+.+++.++..+
T Consensus        21 ~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~   81 (137)
T d1st9a_          21 SDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYG   81 (137)
T ss_dssp             GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTT
T ss_pred             HHhCCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcC
Confidence            346899999998666 99999999999999876 456799999999888888888776543

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.72  E-value=0.0079  Score=51.02  Aligned_cols=62  Identities=6%  Similarity=0.083  Sum_probs=47.5

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      ..++.+.++|++. ||+|+++.|.+.++.++ .+.+|.++.|..|.. ..+.+.+++-.+||+++
T Consensus        28 ~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~-~~l~~~~~V~~~Pt~~~   91 (119)
T d2es7a1          28 VGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQS-EAIGDRFNVRRFPATLV   91 (119)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHH-HHHHHTTTCCSSSEEEE
T ss_pred             CCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCC-HHHHHhcCcCcceEEEE
Confidence            3568899999988 99999999999999988 456898888876644 45667789999999875

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.022  Score=46.95  Aligned_cols=60  Identities=7%  Similarity=-0.098  Sum_probs=47.5

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+|.+.++|+++ |++|+.+.|.+.+++++.. +...+.|.-|... ...+.+++-.+||+++
T Consensus        20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~-~~~f~~vd~d~~~-~l~~~~~v~~~Pt~~~   80 (107)
T d1gh2a_          20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQ-GTAATNNISATPTFQF   80 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSH-HHHHHTTCCSSSEEEE
T ss_pred             CCCEEEEEEECCCCCCccccchhhhccccccc-cccccccccccch-hhhhhcCceeceEEEE
Confidence            377889989888 9999999999999987743 4667777777654 4556678889999765

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=94.63  E-value=0.013  Score=45.10  Aligned_cols=57  Identities=14%  Similarity=0.124  Sum_probs=45.0

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-||+..+|+||+    ++++..++.|++||.+-|..|....+..+..+.-..|.+.++|+
T Consensus         3 v~iYt~~~C~~C~----~ak~~L~~~~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i~g~   59 (74)
T d1r7ha_           3 ITLYTKPACVQCT----ATKKALDRAGLAYNTVDISLDDEARDYVMALGYVQAPVVEVDGE   59 (74)
T ss_dssp             EEEEECTTCHHHH----HHHHHHHHTTCCCEEEETTTCHHHHHHHHHTTCBCCCEEEETTE
T ss_pred             EEEEeCCCChhHH----HHHHHHHHcCCceEEEEccCCHHHHHHHHHhCCCCcCEEEECCE
Confidence            6799999999995    45556677799999999998876565555567777888888875

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=94.45  E-value=0.021  Score=48.52  Aligned_cols=49  Identities=8%  Similarity=-0.042  Sum_probs=39.8

Q ss_pred             ccccccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCC
Q 008311          499 VLDWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKST  547 (570)
Q Consensus       499 i~~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~  547 (570)
                      ++-..++||.+.|+|-+. |++|+...+.+.+.+++ ....++++.|+.+.
T Consensus        16 ~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~   66 (143)
T d2fy6a1          16 ASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPG   66 (143)
T ss_dssp             GGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTT
T ss_pred             eeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeee
Confidence            333468899999999887 99999999999999976 45678888888653

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=94.18  E-value=0.019  Score=49.20  Aligned_cols=47  Identities=9%  Similarity=-0.043  Sum_probs=38.3

Q ss_pred             cccccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecC
Q 008311          500 LDWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKS  546 (570)
Q Consensus       500 ~~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d  546 (570)
                      ......||.+.|||-+. |++|++..+.+.++|++.+..++++.|+.+
T Consensus        23 ~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~   70 (143)
T d2b5xa1          23 REQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMP   70 (143)
T ss_dssp             HHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred             cHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEee
Confidence            33457889999988555 999999999999999876667888988754

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=94.18  E-value=0.022  Score=43.79  Aligned_cols=58  Identities=12%  Similarity=0.200  Sum_probs=48.5

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          508 YIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       508 ~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      .|-||...+||||+.    ++++-++.|++|+.+-|..|...+.+.+..+....|.+.++|+
T Consensus         6 ~I~iYs~~~C~~C~~----ak~lL~~~~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i~g~   63 (74)
T d1nm3a1           6 SISIFTKPGCPFCAK----AKQLLHDKGLSFEEIILGHDATIVSVRAVSGRTTVPQVFIGGK   63 (74)
T ss_dssp             CEEEEECSSCHHHHH----HHHHHHHHTCCCEEEETTTTCCHHHHHHHTCCSSSCEEEETTE
T ss_pred             cEEEEECCCCHHHHH----HHHHHHHcCCCeEEEEccCcHHHHHHHHHhCCccCCEEEECCE
Confidence            377999888999955    5555566699999999999999988888888888899988885

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.15  E-value=0.078  Score=46.02  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=22.0

Q ss_pred             CCCEEEEEEecCCCHHhHHHH--HHHHH
Q 008311          345 RRKNVLLLISDLDISQEELSI--LEQIY  370 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~--L~~iY  370 (570)
                      .+|++++.|+...||.|+++-  +.++-
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~   52 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYN   52 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHH
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHh
Confidence            578889999999999999988  76553

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.83  E-value=0.0068  Score=52.08  Aligned_cols=59  Identities=8%  Similarity=0.030  Sum_probs=43.7

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhh---CCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANT---ARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~---~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .+|.+.++|.++ |++|++|.|.+.++++.   .+..+-++-+..  .. ...+.+++-++|||.+
T Consensus        29 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~--~~-~~~~~~~v~~~Ptl~~   91 (140)
T d2b5ea1          29 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDH--TE-NDVRGVVIEGYPTIVL   91 (140)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEG--GG-CCCSSCCCSSSSEEEE
T ss_pred             CCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeec--cc-hhccccccccCCeEEE
Confidence            578899999888 99999999999998864   344454444443  33 3456788899999865

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.60  E-value=0.26  Score=42.23  Aligned_cols=48  Identities=8%  Similarity=-0.006  Sum_probs=37.7

Q ss_pred             eeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311          339 VNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI  391 (570)
Q Consensus       339 Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI  391 (570)
                      +.+..-.+++.+.-|+.-.||+|+.+-  +.++.+++.+     ...+.+++++.
T Consensus        17 ~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~-----~~~~~~~~~~~   66 (172)
T d1z6ma1          17 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVK-----SGKVERIIKLF   66 (172)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH-----TTSEEEEEEEC
T ss_pred             CeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhcc-----ccceeeeeccc
Confidence            445566678889999999999999988  8888777753     34688888876

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.019  Score=47.51  Aligned_cols=63  Identities=6%  Similarity=0.075  Sum_probs=48.2

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC---CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA---RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~---~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      +..+|++.++|.++ |++|+.+.+.+.+++++.   +..+-++-|..++.. .+.+-+++.++||+++
T Consensus        21 l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~i~~~Pt~~~   87 (120)
T d1meka_          21 LAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES-DLAQQYGVRGYPTIKF   87 (120)
T ss_dssp             HHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC-SSHHHHTCCSSSEEEE
T ss_pred             HhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccch-hHHHHhCCccCCeEEE
Confidence            35689999999888 999999999999998753   345666666666554 4566678999999854

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.023  Score=49.88  Aligned_cols=64  Identities=8%  Similarity=0.008  Sum_probs=46.8

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecCCch-hhhhhcccccccccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKSTKR-DKCGESWQPLQLKSLVT  566 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d~~~-e~~~~~~~~~~~~~~~~  566 (570)
                      -.++|.|.||++++ |+||+.|....   .++.+-.+.+|=.+.|..++++ .++.+.+++-++|++++
T Consensus        39 k~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~  107 (147)
T d2dlxa1          39 QMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSI  107 (147)
T ss_dssp             HHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEE
T ss_pred             HHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeEEEE
Confidence            46899999999888 99999986633   3333333457777777776654 36788889999998754

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.03  Score=47.30  Aligned_cols=47  Identities=15%  Similarity=0.082  Sum_probs=37.1

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhh
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCG  553 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~  553 (570)
                      .+||.+.|+|-+. |+||++-.|.+.++++.   .+.++.++.+.+.+..+
T Consensus        18 ~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~---~~~vi~i~~~~~~~~~~   65 (136)
T d1z5ye1          18 TQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAI   65 (136)
T ss_dssp             HSSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHH
T ss_pred             cCCCEEEEEEEcCcCCCcCccccchhhhhhh---hhhhcccccccchhhhH
Confidence            4899999999888 99999999999998764   56677777766544433

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.012  Score=50.95  Aligned_cols=61  Identities=5%  Similarity=0.092  Sum_probs=51.1

Q ss_pred             CCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311          505 EGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT  566 (570)
Q Consensus       505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~  566 (570)
                      .++.+.|+|.+. |++|+++.+.+.+++++ .+..|-+..|..|. +..+.+.+++-++||+++
T Consensus        35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~-~~~la~~~~V~~~PT~~~   97 (132)
T d2hfda1          35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ-SEAIGDRFGVFRFPATLV   97 (132)
T ss_dssp             SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHH-HHHHHHHHTCCSCCEEEE
T ss_pred             CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecC-CHHHHHhhccCcceeEEE
Confidence            457899999988 99999999999999987 45568888888664 456778889999999876

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.11  E-value=0.11  Score=43.38  Aligned_cols=30  Identities=17%  Similarity=0.124  Sum_probs=22.3

Q ss_pred             CCCEEEEEEecCCCHHhHHHHHHHHHHHHh
Q 008311          345 RRKNVLLLISDLDISQEELSILEQIYNESR  374 (570)
Q Consensus       345 kGKvVlL~FwAsWCpPCr~e~L~~iY~elk  374 (570)
                      ++|+|++.|.|.||..|.....+++-++++
T Consensus        20 ~~~~~lV~F~~~wc~~~~~~~~~~la~~~~   49 (122)
T d1g7ea_          20 KSKFVLVKFDTQYPYGEKQDEFKRLAENSA   49 (122)
T ss_dssp             GSSEEEEEEECSSCCTTTTHHHHHHHHHGG
T ss_pred             hCCeEEEEEecCCcCcccCHHHHHHHHHHH
Confidence            568999999999997776544556666664

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=93.04  E-value=0.04  Score=47.00  Aligned_cols=56  Identities=7%  Similarity=-0.048  Sum_probs=40.7

Q ss_pred             ccccccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcc
Q 008311          499 VLDWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESW  556 (570)
Q Consensus       499 i~~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~  556 (570)
                      +.....+||.+.|||-+. |++|+...+.+.+++++.  +++++.|+.+......++.+
T Consensus        24 ~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~--~~~~~~i~~~~~~~~~~~~~   80 (144)
T d1knga_          24 LDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK--RFQLVGINYKDAADNARRFL   80 (144)
T ss_dssp             BCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT--TSEEEEEEESCCHHHHHHHH
T ss_pred             cCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc--CceeEEEEeeechHHHHHHH
Confidence            333456899999999888 999999999999987654  46667666655544444433

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.01  E-value=0.056  Score=47.53  Aligned_cols=53  Identities=15%  Similarity=0.142  Sum_probs=44.7

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQ  557 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~  557 (570)
                      ++|+.+.+=|.+. |++||+..|.+.++++.. .++++++|+.|+..+.+++++.
T Consensus        52 ~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~-~~~~~~~i~~d~~~~~~~~~~~  105 (166)
T d1z6na1          52 IERRYRLLVAGEMWCPDCQINLAALDFAQRLQ-PNIELAIISKGRAEDDLRQRLA  105 (166)
T ss_dssp             CCSCEEEEEECCTTCHHHHHHHHHHHHHHHHC-TTEEEEEECHHHHHHHTTTTTT
T ss_pred             hcCCeEEEEEEeCcCccHHHHHHHHHHHHHHC-CCCcEEEEECccCHHHHHHHHH
Confidence            5788888888888 999999999999998773 4888999999988887777654

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=0.048  Score=42.09  Aligned_cols=57  Identities=14%  Similarity=0.181  Sum_probs=42.7

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-||...+|+||++    +++..++.|++||.+-|..|....+..+..+.-..|.++++|+
T Consensus         3 i~iYs~~~C~~C~~----ak~~L~~~~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i~~~   59 (76)
T d1h75a_           3 ITIYTRNDCVQCHA----TKRAMENRGFDFEMINVDRVPEAAEALRAQGFRQLPVVIAGDL   59 (76)
T ss_dssp             EEEEECTTCHHHHH----HHHHHHHTTCCCEEEETTTCHHHHHHHHHTTCCSSCEEEETTE
T ss_pred             EEEEeCCCCccHHH----HHHHHHhcCceeEEEeecCCHHHHHHHHhcCCCCCCEEEECCE
Confidence            67999989999955    5555566799999999988765544444467777888888774

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=91.64  E-value=0.035  Score=45.37  Aligned_cols=58  Identities=3%  Similarity=-0.011  Sum_probs=37.9

Q ss_pred             cCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CC----CEEEEEEecCCchhhhhhccccccccccc
Q 008311          504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RI----PLEMVYVGKSTKRDKCGESWQPLQLKSLV  565 (570)
Q Consensus       504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~----~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~  565 (570)
                      ..+|.+.++|-++ |++|++|.|.+.++++.. +.    .+-+.....+..    ....++-+.||+.
T Consensus        18 ~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~Pti~   81 (116)
T d2djja1          18 DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN----DVPDEIQGFPTIK   81 (116)
T ss_dssp             CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS----CCSSCCSSSSEEE
T ss_pred             cCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchh----hhcccccCCCEEE
Confidence            3578888888888 999999999999998641 21    122222222222    2234677889975

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=91.43  E-value=0.082  Score=41.19  Aligned_cols=57  Identities=4%  Similarity=0.201  Sum_probs=42.8

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch-hhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR-DKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~-e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |-+|...+||||++    ++++.++.|++|+.+-|++|... +.+++.-+.-..|.+.++|+
T Consensus         3 I~iys~~~Cp~C~~----ak~~L~~~~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i~~~   60 (82)
T d1fova_           3 VEIYTKETCPYCHR----AKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQ   60 (82)
T ss_dssp             EEEEECSSCHHHHH----HHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEETTE
T ss_pred             EEEEeCCCCHhHHH----HHHHHHHcCCCeEEEeccchHHHHHHHHHHhCCCCCCeEEECCE
Confidence            67899999999964    55555666999999999987655 35555556666788888775

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.46  E-value=0.12  Score=45.41  Aligned_cols=63  Identities=11%  Similarity=-0.030  Sum_probs=46.6

Q ss_pred             ccccccCCeEEEEEecCC-Cc-hHHHHHHHHHHHHh---hCCCCEEEEEEecC---Cchhhhhhccccccc
Q 008311          499 VLDWIKEGKYIFLYGGDD-VE-WVRKFTTAARSVAN---TARIPLEMVYVGKS---TKRDKCGESWQPLQL  561 (570)
Q Consensus       499 i~~~~~egk~I~lYfgad-~~-w~r~FT~~l~~vy~---~~~~~fEiv~Vs~d---~~~e~~~~~~~~~~~  561 (570)
                      ++..-..||.+-|||+.- |+ +|..-++.+.++++   +.+.++++++||-|   +..+.++++.+..++
T Consensus        24 vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~~y~~~~~~   94 (172)
T d1xzoa1          24 VSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPL   94 (172)
T ss_dssp             EETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCC
T ss_pred             EcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHHHHHHHHhcc
Confidence            444457899999999766 85 78888888888775   36789999999976   344566766655444

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.98  E-value=0.26  Score=38.77  Aligned_cols=56  Identities=21%  Similarity=0.231  Sum_probs=45.9

Q ss_pred             EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      |=++ |..|+-|.+-...+.++.++.|...|+..|.  + -.++.+ ++++..|.|+++|+
T Consensus         4 IkVl-g~gC~~C~~~~~~v~~a~~e~gi~a~v~kv~--d-~~ei~~-ygVmstPalvIdg~   59 (77)
T d1iloa_           4 IQIY-GTGCANCQMLEKNAREAVKELGIDAEFEKIK--E-MDQILE-AGLTALPGLAVDGE   59 (77)
T ss_dssp             EEEE-CSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC--S-HHHHHH-HTCSSSSCEEETTE
T ss_pred             EEEe-CCCCccHHHHHHHHHHHHHHcCCceEEEEeC--C-HHHHHH-cCCcCCCEEEECCE
Confidence            4455 6789999999999999999999999999993  3 333444 89999999999996

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=89.47  E-value=0.2  Score=44.94  Aligned_cols=57  Identities=9%  Similarity=-0.035  Sum_probs=42.5

Q ss_pred             ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecC-------Cchhhhhhccccc
Q 008311          503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKS-------TKRDKCGESWQPL  559 (570)
Q Consensus       503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d-------~~~e~~~~~~~~~  559 (570)
                      -..||.+-|.|-+. ||+||+..+.|.+++++-+..+.++.|.+.       ++.+.+++..+.-
T Consensus        29 d~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~   93 (187)
T d2cvba1          29 QFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEH   93 (187)
T ss_dssp             GCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHH
T ss_pred             HhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHh
Confidence            35789888888666 999999999999999886667999988652       2335555555443

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=88.90  E-value=0.43  Score=43.21  Aligned_cols=110  Identities=11%  Similarity=0.046  Sum_probs=56.0

Q ss_pred             HHHHHhCCCCCCceEEEECCCCc-EEccccchhHhhhcCCCCCCC-chhHHHHhhhc-CccccccccCCCcccccccc-C
Q 008311          430 RYVKDVWHFKNKPILVVLDPQGR-VVSPNALHMMWIWGSNAFPFT-SLREEALWKEE-TWRLELLVDGIDPLVLDWIK-E  505 (570)
Q Consensus       430 ~~L~~~y~V~~IPtlVVLDpqGk-Vv~~na~~~I~~~G~~aFPFt-~~~~e~L~~e~-~w~~~ll~d~~d~~i~~~~~-e  505 (570)
                      ..+.+.+||+|.|++||   +|+ +++..+...-..-+   |+=. -.-.+.|.+++ .=...-...|.|+.+.+.-. .
T Consensus        40 ~~~a~~~gi~GtPtfiV---nGky~v~~~~~~~~~~~~---~~~~~~~~~~~L~~k~~~~~~~~~~eG~~Y~~l~~p~~~  113 (195)
T d1un2a_          40 EKAAADVQLRGVPAMFV---NGKYQLNPQGMDTSNMDV---FVQQYADTVKYLSEKKGGGTGAQYEDGKQYTTLEKPVAG  113 (195)
T ss_dssp             HHHHHHTTCCSSSEEEE---TTTEEECGGGSCCSSHHH---HHHHHHHHHHHHTC---------CCBTTTEEECSSCCTT
T ss_pred             HHHHHHhCCCcCCEEEE---CCeeeeccccccccchhh---hHHHHHHHHHHHHhCcccccCCCCCCCCcceECCCCCCC
Confidence            45678899999999765   566 34432221100000   0000 00112222111 11112234566665543322 2


Q ss_pred             CeEEEEEecCCCchHHHHHHHHH---HHHhh--CCCCEEEEEEec
Q 008311          506 GKYIFLYGGDDVEWVRKFTTAAR---SVANT--ARIPLEMVYVGK  545 (570)
Q Consensus       506 gk~I~lYfgad~~w~r~FT~~l~---~vy~~--~~~~fEiv~Vs~  545 (570)
                      ...|--||+=.||.|+.|.+.+.   ++.+.  .+..|+.+.+.-
T Consensus       114 ~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~~  158 (195)
T d1un2a_         114 APQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNF  158 (195)
T ss_dssp             CCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSS
T ss_pred             CceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecCc
Confidence            33477778766999999999764   55444  466788887764

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.80  E-value=0.14  Score=41.65  Aligned_cols=60  Identities=8%  Similarity=0.051  Sum_probs=39.2

Q ss_pred             CeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311          506 GKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK  569 (570)
Q Consensus       506 gk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~  569 (570)
                      -+.|-+|....|++|++..+.|.++..  ...++++.|.-+...+-.+++ +. .+|.+.++|+
T Consensus        16 ~p~i~lft~~~C~~C~~a~~~L~~~~~--~~~~~~v~vd~~~~~~l~~~y-~~-~VPvl~idg~   75 (100)
T d1wjka_          16 LPVLTLFTKAPCPLCDEAKEVLQPYKD--RFILQEVDITLPENSTWYERY-KF-DIPVFHLNGQ   75 (100)
T ss_dssp             CCEEEEEECSSCHHHHHHHHHTSTTSS--SSEEEEEETTSSTTHHHHHHS-SS-SCSEEEESSS
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHhhh--hcceEEEecccccCHHHHHHh-cc-cCCceeecCc
Confidence            356778877779999988887766622  223444444455554445554 43 4899999985

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.85  E-value=0.38  Score=40.98  Aligned_cols=50  Identities=12%  Similarity=0.042  Sum_probs=38.8

Q ss_pred             cccccCCeEEEEEe--cCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCch
Q 008311          500 LDWIKEGKYIFLYG--GDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKR  549 (570)
Q Consensus       500 ~~~~~egk~I~lYf--gad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~  549 (570)
                      ++...+||.+-|+|  +..||.|+.-.+.+.+.|.+ .+..++++.|+.|+++
T Consensus        24 sd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~   76 (160)
T d2cx4a1          24 YEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPW   76 (160)
T ss_dssp             HHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHH
T ss_pred             HHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchh
Confidence            33345798777777  77799999888888888765 5677899999988654

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.03  E-value=1  Score=36.14  Aligned_cols=58  Identities=12%  Similarity=0.046  Sum_probs=45.2

Q ss_pred             EEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc-CCC
Q 008311          508 YIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT-SGK  569 (570)
Q Consensus       508 ~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~-~~~  569 (570)
                      .+=||+...|++|++-.-.|    .+.|+++|++.|.-.+..+.+.+..-.=.+|.|+. +|.
T Consensus        19 ~~~Ly~~~~sP~~~rv~~~l----~~kgi~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~dg~   77 (98)
T d1eema2          19 SIRIYSMRFCPFAERTRLVL----KAKGIRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQ   77 (98)
T ss_dssp             CEEEEECTTCHHHHHHHHHH----HHTTCCEEEEEBCTTSCCGGGGGTCTTCCSCEEEETTCC
T ss_pred             cEEEEcCCCChHHHHHHHHH----HHhCCCCEEEEecccCCcHHHHhhhccccceeEEeCCCC
Confidence            56899988899997544444    55699999999987777778888776678888886 464

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=81.86  E-value=0.83  Score=34.82  Aligned_cols=53  Identities=21%  Similarity=0.196  Sum_probs=40.0

Q ss_pred             EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc-CC
Q 008311          511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT-SG  568 (570)
Q Consensus       511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~-~~  568 (570)
                      ||+...||+|+.    ++-+.++.|+++|++.+..+++ +.+.+....-..|.|++ +|
T Consensus         3 LY~~~~cP~~~r----vr~~l~~kgi~~e~~~~~~~~~-~~~~~~~p~~~VP~L~~~dg   56 (75)
T d1g7oa2           3 LYIYDHCPYCLK----ARMIFGLKNIPVELHVLLNDDA-ETPTRMVGQKQVPILQKDDS   56 (75)
T ss_dssp             EEECTTCHHHHH----HHHHHHHHTCCCEEEECCTTTT-HHHHHHHSSSCCCEEEETTT
T ss_pred             EEccCCCCchHH----HHHHHHHhCCCcccccccccch-HHHHHhCCCCceEEEEEcCC
Confidence            788888998865    4444455699999999988766 45666667778888887 45

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=80.57  E-value=1.1  Score=35.07  Aligned_cols=61  Identities=16%  Similarity=0.065  Sum_probs=46.0

Q ss_pred             CCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccc-ccccccccCCC
Q 008311          505 EGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQP-LQLKSLVTSGK  569 (570)
Q Consensus       505 egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~-~~~~~~~~~~~  569 (570)
                      |.+-+-||+...|++||+=.-.|    .+.|.+||.+.|.-.+..+.+.+..-. -.+|.|+.+|.
T Consensus         2 ~~~~l~Ly~~~~Sp~~~rvr~~L----~~kgi~~e~~~v~~~~~~~~~~~~nP~~g~vP~L~~~g~   63 (84)
T d1oyja2           2 EEKELVLLDFWVSPFGQRCRIAM----AEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGR   63 (84)
T ss_dssp             CSCCEEEEECTTCHHHHHHHHHH----HHHTCCCEEEECCTTSCCHHHHHHSTTTCCSCEEEETTE
T ss_pred             CCCceEEEcCCCChHHHHHHHHH----HHcCCCcEEEEEccCcCCHHHHhhCCCcCcccEEEECCc
Confidence            45667899888899998644333    455999999999888777888776653 56888887764