Citrus Sinensis ID: 008320


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570
MGKSPAKWIKTVLFGKKSSKSNAFKGREKVANEKEALVAVKASEADAALDPPLDSHPTRNTIHRDERRLAEDKESVDLSLQGSQVTDSQILTLQDASYDPEKIRQEKAATKAQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDIGLEVGKTCTPLKLLGKPLDPIELNLSTRISKLSGSAFISKLLASSPTVLSLHLQYDPVEPNSVSNWLERWSAFHIWKPAPQPKKVSDSKSQKKHVSAQTLEAETGRPKRSVRRNPAANADSISVHSTPEFERSKRSLKKVSSHPADPVHENPQSELEKVKRSLRKVHNPLVENSAPVQSEIEIEKPNHSLEKLPTSFVCHEGLERSLSNSGEKMKKETTLTPSELPDVETTPDLVEMNEMSDVPPGDLAADESKPWMESGGKDETIPMTNGNFEPKEDSTNNENNKSSRKAAVLTKQEHAENGLQSSPSLPSYMAATESAKAKLRLQGSPRSSQDSAEKNSGTRRHSLPSSTNSKISSQSPRTQRVVHAGGKNKGDKNHFSSREGNAKVTQAEWRR
cccccccHHHHHHcccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccHHHHHHHccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccHHHccccccHcccHHcHHHHHEEHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccEEccccccccccccccccccccEcccccccccccccccccccccccccHHHcc
MGKSPAKWIKTVLFgkkssksnafkGREKVANEKEALVAVKAseadaaldppldshptrntihrderrlaedkesvdlslqgsqvtdsqiltlqdasydpeKIRQEKAATKAQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALvrgrkvrhsdiglevgktctplkllgkpldpieLNLSTRISKLSGSAFISKLLAssptvlslhlqydpvepnsvsnWLERWSAfhiwkpapqpkkvsdsksqkkHVSAQTleaetgrpkrsvrrnpaanadsisvhstpeferSKRSLkkvsshpadpvhenpqsELEKVKRSLRKvhnplvensapvqseieiekpnhsleklptsfvcheglerslsnsgekmkkettltpselpdvettpdlvemnemsdvppgdlaadeskpwmesggkdetipmtngnfepkedstnnennksSRKAAVLTKQehaenglqsspslpsyMAATESAKAKLrlqgsprssqdsaeknsgtrrhslpsstnskissqsprtqrvvhaggknkgdknhfssregnakvtQAEWRR
mgkspakwiktvlfgkkssksnafkgrekvaNEKEALVAVKAseadaaldppldshptrntihrderrlaedkesvdlslqgsqvtdsqiltLQDASYDPEKIRQEKAATKAQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRkvrhsdiglevgktctplkllgkpldPIELNLSTRISKLSGSAFISKLLASSPTVLSLHLQYDPVEPNSVSNWLERWSAFHIWKPAPqpkkvsdsksqkkhvsaqtleaetgrpkrsvrrnpaanadsisvhstpeferSKRSLKKVsshpadpvhenpqseLEKVKRSLRKVhnplvensapvqsEIEIEKPNHSLEKLPTSFVCHEGLErslsnsgekmkkettltpselpdvETTPDLVEMNEMSDVPPGDLAADESKPWMesggkdetipmtngnfepkedstnnennkSSRKAAVLTKQEHaenglqsspslpSYMAATESAKAKlrlqgsprssqdsaeknsgtrrhslpsstnskissqsprtqrvvhaggknkgdknhfssregnakvtqaewrr
MGKSPAKWIKTVLFGKKSSKSNAFKGREKVANEKEALVAVKASEADAALDPPLDSHPTRNTIHRDERRLAEDKESVDLSLQGSQVTDSQILTLQDASYDPEKIRQEKAATKAQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDIGLEVGKTCTPLKLLGKPLDPIELNLSTRISKLSGSAFISKLLASSPTVLSLHLQYDPVEPNSVSNWLERWSAFHIWKPAPQPKKVSDSKSQKKHVSAQTLEAETGRPKRSVRRNPAANADSISVHSTPEFERSKRSLKKVSSHPADPVHENPQSELEKVKRSLRKVHNPLVENSAPVQSEIEIEKPNHSLEKLPTSFVCHEGLERSLSNSGEKMKKETTLTPSELPDVETTPDLVEMNEMSDVPPGDLAADESKPWMESGGKDETIPMTNGNFEPKEDSTNNENNKSSRKAAVLTKQEHAENGLQSSPSLPSYMAATESAKAKLRLQGSPRSSQDSAEKNSGTRRHSLPSSTNSKISSQSPRTQRVVHAGGKNKGDKNHFSSREGNAKVTQAEWRR
*******WIKTVLF************************************************************************************************KAQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDIGLEVGKTCTPLKLLGKPLDPIELNLSTRISKLSGSAFISKLLASSPTVLSLHLQYDPVEPNSVSNWLERWSAFHIWK*******************************************************************************************************************************************************************************************************************************************************************************************************************************
MGKSPAKWIKT*******************************************************************************************IRQEKAATKAQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRH*******************************************************************NWLERWSA************************************************************************************************************************************************************************************************************************************************************************************************************************************
MGKSPAKWIKTVLFGKKSSKSNAFKGREKVANEKEALVAVKASEADAALDPPLDSHPTRNTIHRDERRLAEDKESVDLSLQGSQVTDSQILTLQDASYDPEKIRQEKAATKAQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDIGLEVGKTCTPLKLLGKPLDPIELNLSTRISKLSGSAFISKLLASSPTVLSLHLQYDPVEPNSVSNWLERWSAFHIWKPA***************************************ADSI************************************VKRSLRKVHNPLVENSAPVQSEIEIEKPNHSLEKLPTSFVCHEGLERS*****************ELPDVETTPDLVEMNEMSDVPPGDLAADESKPWMESGGKDETIPMTNGNFEP****************AVLTK*********SSPSLPSYMAA********************************************************************************
*************F**************************************************************************QILTLQDASYDPEKIRQEKAATKAQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDIGLEVGKTCTPLKLLGKPLDPIELNLSTRISKLSGSAFISKLLASSPTVLSLHLQYD*VEPNSVSNWLERWSAFHIWK*******************************************************************************************************************************************************************************************************************************************************************************************************************************
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MGKSPAKWIKTVLFGKKSSKSNAFKGREKVANEKEALVAVKASEADAALDPPLDSHPTRNTIHRDERRLAEDKESVDLSLQGSQVTDSQILTLQDASYDPEKIRQEKAATKAQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDIGLEVGKTCTPLKLLGKPLDPIELNLSTRISKLSGSAFISKLLASSPTVLSLHLQYDPVEPNSVSNWLERWSAFHIWKPAPQPKKVSDSKSQKKHVSAQTLEAETGRPKRSVRRNPAANADSISVHSTPEFERSKRSLKKVSSHPADPVHENPQSELEKVKRSLRKVHNPLVENSAPVQSEIEIEKPNHSLEKLPTSFVCHEGLERSLSNSGEKMKKETTLTPSELPDVETTPDLVEMNEMSDVPPGDLAADESKPWMESGGKDETIPMTNGNFEPKEDSTNNENNKSSRKAAVLTKQEHAENGLQSSPSLPSYMAATESAKAKLRLQGSPRSSQDSAEKNSGTRRHSLPSSTNSKISSQSPRTQRVVHAGGKNKGDKNHFSSREGNAKVTQAEWRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query570 2.2.26 [Sep-21-2011]
Q8L4D8587 Protein IQ-DOMAIN 31 OS=A yes no 0.978 0.950 0.485 1e-117
Q9FXI5 794 Protein IQ-DOMAIN 32 OS=A no no 0.224 0.161 0.371 3e-18
Q8LPG9668 Protein IQ-DOMAIN 14 OS=A no no 0.128 0.109 0.426 2e-13
Q9SF32454 Protein IQ-DOMAIN 1 OS=Ar no no 0.261 0.328 0.289 4e-10
Q6PIF6 2116 Unconventional myosin-VII yes no 0.168 0.045 0.403 4e-07
Q99MZ6 2113 Unconventional myosin-VII yes no 0.173 0.046 0.364 2e-06
>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1 Back     alignment and function desciption
 Score =  422 bits (1084), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 291/599 (48%), Positives = 369/599 (61%), Gaps = 41/599 (6%)

Query: 1   MGKSPAKWIKTVLFGKKSSKSNAFKGREKVANEKEALVAVKASEADAALDPPLDSHPTRN 60
           MGKS  KW+K VL GKK+SKS+  K +E+V + KE LV  K  E+D   D P       N
Sbjct: 1   MGKS-TKWLKNVLLGKKTSKSSGSKDKERVVSGKEVLVTSKVEESDVVSDLPSFEVAETN 59

Query: 61  TIHRDERRLA------EDKESVDLSLQGSQVTDSQ-ILTLQDASY-DPEKIRQEKAATKA 112
           T+ R    L       E+    ++ L   + TDSQ +  +QD S  D E+I++E AAT  
Sbjct: 60  TVDRSGGMLETQNVGPEEISDDEIELPEGKSTDSQNVAPVQDHSLSDAERIQREIAATSV 119

Query: 113 QAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHS 172
           QA FRGYLARRAF ALKGIIRLQALIRGHLVRRQAVATL +++G+V+LQA  RGR++R S
Sbjct: 120 QAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFARGREIRKS 179

Query: 173 DIGLEVGKTCTPLKLLGKPL-DPIELNLSTRISKLSGSAFISKLLASSPTVLSLHLQYDP 231
           DIG++V + C    L G  L +P +  L   I KL+ +AF  KLLASSP VL +H  YD 
Sbjct: 180 DIGVQVYRKCRLQLLQGNKLANPTDAYLG--IKKLTANAFAQKLLASSPKVLPVHA-YDT 236

Query: 232 VEPNSVSNWLERWSAFHIWKPAPQPKKVSDSKSQKKHVSAQTLEAETGRPKRSVRRNPAA 291
             PNS   WLE WSA   WKP PQPKK    K Q + +    +EAE+ +PK+SVR+ PA+
Sbjct: 237 SNPNSNLIWLENWSASCFWKPVPQPKKTISRKPQNRLL----VEAESAKPKKSVRKVPAS 292

Query: 292 NADSISVHSTPEFERSKRSLKKVSSHPAD-PVHENPQSELEKVKRSLRKVHNPLVENSAP 350
           N +S SV ++ EFE+ KRS +KVSS   + P  E+PQ ELEKVKRSLRKVHNP+VE+S  
Sbjct: 293 NFESSSVQTSFEFEKPKRSFRKVSSQSIEPPAVEDPQIELEKVKRSLRKVHNPVVESSIQ 352

Query: 351 VQS--EIEIEKPNHSLEKLPTSF--VCHEGLERSLSNSGEKMKKETTLTPSE----LPDV 402
            Q     E+EKP   +EK   S   + HE  E  ++   EK K+E +  P E    L   
Sbjct: 353 PQRSPRKEVEKPKLGVEKTRESSYPLVHETAEEPVNVCDEKKKQEISEQPEEEVHALEME 412

Query: 403 ETTPDLVEMNEMSD------VPPGDLAADESKPWMESGGKDETIPMTNGNFEPKEDSTNN 456
             TP  +E NE  D      +   + A  E KP ME   K+E  P  N     KE+S   
Sbjct: 413 VHTPGPLETNEALDSSLVNQIDSNEKAMVEEKPSMEKDTKEEKTPKPNN----KENSAGK 468

Query: 457 ENNKSSRKAAVLTKQEHAE-NG-LQSSPSLPSYMAATESAKAKLRLQGSPRSS-QDSAEK 513
           EN KS +K +  +K E  E NG  ++SPS+PSYM AT+SAKAKLRLQGSP+S+ QD  EK
Sbjct: 469 ENQKSRKKGSATSKTEREESNGHHETSPSIPSYMQATKSAKAKLRLQGSPKSAEQDGTEK 528

Query: 514 NSGTRRHSLPSSTNSKISSQSPRTQRVVHAGGK--NKGDKNHFSSREGNAKVTQAEWRR 570
            +  RRHSLPS  N +I+S SPRT R+ ++G K  NK +K   SSREGNAK T AE +R
Sbjct: 529 ATVPRRHSLPSPGNGRITSHSPRTTRLANSGDKTGNKKEKPLLSSREGNAKTTPAERKR 587





Arabidopsis thaliana (taxid: 3702)
>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3 Back     alignment and function description
>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1 Back     alignment and function description
>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1 Back     alignment and function description
>sp|Q6PIF6|MYO7B_HUMAN Unconventional myosin-VIIb OS=Homo sapiens GN=MYO7B PE=2 SV=2 Back     alignment and function description
>sp|Q99MZ6|MYO7B_MOUSE Unconventional myosin-VIIb OS=Mus musculus GN=Myo7b PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query570
225456707573 PREDICTED: protein IQ-DOMAIN 31-like [Vi 0.977 0.972 0.590 1e-176
255540951590 calmodulin binding protein, putative [Ri 0.989 0.955 0.610 1e-174
118481218592 unknown [Populus trichocarpa] 0.987 0.951 0.594 1e-172
224124046582 predicted protein [Populus trichocarpa] 0.975 0.955 0.593 1e-170
449520463599 PREDICTED: protein IQ-DOMAIN 31-like [Cu 0.991 0.943 0.557 1e-159
449469462599 PREDICTED: protein IQ-DOMAIN 31-like [Cu 0.991 0.943 0.556 1e-159
356512359586 PREDICTED: protein IQ-DOMAIN 31-like [Gl 0.980 0.953 0.539 1e-156
356562818587 PREDICTED: protein IQ-DOMAIN 31-like [Gl 0.980 0.952 0.543 1e-155
357477495584 IQ domain-containing protein [Medicago t 0.970 0.946 0.540 1e-154
356516764584 PREDICTED: protein IQ-DOMAIN 31-like [Gl 0.977 0.953 0.539 1e-146
>gi|225456707|ref|XP_002274035.1| PREDICTED: protein IQ-DOMAIN 31-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 346/586 (59%), Positives = 426/586 (72%), Gaps = 29/586 (4%)

Query: 1   MGKSPAKWIKTVLFGKKSSKSNAFKGREKVANEKEALVAVKASEADAALDPPLDSHPTRN 60
           MGKSP KWIKT+LFGKK+SKSN  KGREKVANE+E  VA KA EAD  LDP + S    N
Sbjct: 1   MGKSPGKWIKTLLFGKKASKSNFSKGREKVANEREVWVAAKAPEADLGLDPLVASE-APN 59

Query: 61  TIHRDERRLAEDKES---------VDLSLQGSQVTDSQILTLQDASYDPEKIRQEKAATK 111
            I ++E    E++E+         +D  +QG +    Q+ TL +    PE+IRQE+AATK
Sbjct: 60  IIDKNEMLEFENREASAGGILSGDLDADIQGCR----QLSTLNN----PERIRQERAATK 111

Query: 112 AQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRH 171
           AQA FRGYLARRAFRALKGIIRLQALIRGHLVRRQA+ TL  MLG+VK+QAL RGR++RH
Sbjct: 112 AQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAICTLYCMLGIVKIQALARGRRIRH 171

Query: 172 SDIGLEVGKTCTPLK-LLGKPLDPIELNLSTRISKLSGSAFISKLLASSPTVLSLHLQYD 230
           S++GL V K C  +K L GK  DP  ++ ST+I+K + +AF+ KLLASSPTV+ LHLQYD
Sbjct: 172 SELGLRVNKKCIQVKPLKGKLGDPAGVSSSTQIAKRTANAFVHKLLASSPTVMPLHLQYD 231

Query: 231 PVEPNSVSNWLERWSAFHIWKPAPQPKKVSDSKSQKKHVSAQTLEAETGRPKRSVRRNPA 290
             EPNS   WL+ WSA H WKP PQP++V DSKSQKK  +   +E ETGRPKRSVRR PA
Sbjct: 232 SAEPNSDFYWLQCWSASHFWKPIPQPRQVPDSKSQKKQGNPLAIETETGRPKRSVRRIPA 291

Query: 291 ANADSISVHSTPEFERSKRSLKKVSSHPADPVHENPQSELEKVKRSLRKVHNPLVENSAP 350
            N DS+S  ST EFE+ KR+ KK+SS PADPV E+PQ+ELEKVKR+LRKVHNP+VE+SA 
Sbjct: 292 MNVDSVSAQSTTEFEKPKRNFKKLSSRPADPVLEHPQNELEKVKRNLRKVHNPVVESSA- 350

Query: 351 VQSEIEIEKPNHSLEKLPTSFVCHEGLERSLSNSGEKMKKETTLTPSELPDVETT---PD 407
            Q   E EKP  S+EK+ +S   H+ LE+S+ +S EKM  ET +T S+LP+VETT   P 
Sbjct: 351 -QPGNETEKPKQSMEKM-SSTPGHDVLEQSMGDSAEKMNMETPVTVSKLPEVETTTEPPA 408

Query: 408 LVEMNEMSDVPPGDLAADESKPWMESGGKDETIPMTNGNFEPKEDSTNNENNKSSRKAAV 467
           ++ +NE SD    D    E +P +E+ GKDE IP+ N     KED+ +NEN KSSRKA++
Sbjct: 409 VIWVNEASDSLHNDQTVVELQP-VENSGKDENIPVANEELSSKEDAISNENQKSSRKASI 467

Query: 468 LTKQEHAENGLQSSPSLPSYMAATESAKAKLRLQGSPRSSQDSAEKNSGTRRHSLPSSTN 527
             K E AENGL+SSP LPSYMA T+SAKAKLR QGSPR  QD  EKN+ TRRHSLPSSTN
Sbjct: 468 PAKPERAENGLESSPKLPSYMATTQSAKAKLRAQGSPRLGQDVPEKNNITRRHSLPSSTN 527

Query: 528 SKISSQSPRTQRVVHAGGK--NKGDKNHFSSREGNAKV-TQAEWRR 570
            K++S SP+TQ+ V   GK  N+ +++  SS++GNAKV  QAEWRR
Sbjct: 528 GKMNSLSPKTQKPVQGNGKGGNRSERSILSSKDGNAKVAVQAEWRR 573




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540951|ref|XP_002511540.1| calmodulin binding protein, putative [Ricinus communis] gi|223550655|gb|EEF52142.1| calmodulin binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|118481218|gb|ABK92559.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224124046|ref|XP_002330091.1| predicted protein [Populus trichocarpa] gi|222871225|gb|EEF08356.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449520463|ref|XP_004167253.1| PREDICTED: protein IQ-DOMAIN 31-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449469462|ref|XP_004152439.1| PREDICTED: protein IQ-DOMAIN 31-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356512359|ref|XP_003524887.1| PREDICTED: protein IQ-DOMAIN 31-like [Glycine max] Back     alignment and taxonomy information
>gi|356562818|ref|XP_003549665.1| PREDICTED: protein IQ-DOMAIN 31-like [Glycine max] Back     alignment and taxonomy information
>gi|357477495|ref|XP_003609033.1| IQ domain-containing protein [Medicago truncatula] gi|217074616|gb|ACJ85668.1| unknown [Medicago truncatula] gi|355510088|gb|AES91230.1| IQ domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356516764|ref|XP_003527063.1| PREDICTED: protein IQ-DOMAIN 31-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query570
TAIR|locus:2019205587 IQD31 "AT1G74690" [Arabidopsis 0.978 0.950 0.487 5.2e-120
TAIR|locus:2034929572 IQD30 "AT1G18840" [Arabidopsis 0.959 0.956 0.470 1.6e-109
TAIR|locus:2058862636 IQD29 "AT2G02790" [Arabidopsis 0.935 0.838 0.337 8.4e-58
TAIR|locus:2012507 664 IQD28 "AT1G14380" [Arabidopsis 0.710 0.609 0.356 2.5e-56
TAIR|locus:2057459416 IQD6 "AT2G26180" [Arabidopsis 0.184 0.252 0.481 2.6e-20
TAIR|locus:2130200387 IQD19 "AT4G14750" [Arabidopsis 0.277 0.408 0.337 5.2e-20
TAIR|locus:2200945527 IQD18 "AT1G01110" [Arabidopsis 0.307 0.332 0.315 5.6e-19
TAIR|locus:2143503461 iqd2 "AT5G03040" [Arabidopsis 0.296 0.366 0.306 5.9e-19
TAIR|locus:2090409422 IQD5 "AT3G22190" [Arabidopsis 0.194 0.263 0.438 1.3e-18
TAIR|locus:2035428 794 iqd32 "AT1G19870" [Arabidopsis 0.898 0.644 0.236 7.5e-18
TAIR|locus:2019205 IQD31 "AT1G74690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
 Identities = 292/599 (48%), Positives = 378/599 (63%)

Query:     1 MGKSPAKWIKTVLFGKKSSKSNAFKGREKVANEKEALVAVKASEADAALDPPLDSHPTRN 60
             MGKS  KW+K VL GKK+SKS+  K +E+V + KE LV  K  E+D   D P       N
Sbjct:     1 MGKS-TKWLKNVLLGKKTSKSSGSKDKERVVSGKEVLVTSKVEESDVVSDLPSFEVAETN 59

Query:    61 TIHR-----DERRLAEDKESVD-LSLQGSQVTDSQ-ILTLQDASY-DPEKIRQEKAATKA 112
             T+ R     + + +  ++ S D + L   + TDSQ +  +QD S  D E+I++E AAT  
Sbjct:    60 TVDRSGGMLETQNVGPEEISDDEIELPEGKSTDSQNVAPVQDHSLSDAERIQREIAATSV 119

Query:   113 QAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHS 172
             QA FRGYLARRAF ALKGIIRLQALIRGHLVRRQAVATL +++G+V+LQA  RGR++R S
Sbjct:   120 QAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFARGREIRKS 179

Query:   173 DIGLEVGKTCTPLKLLGKPL-DPIELNLSTRISKLSGSAFISKLLASSPTVLSLHLQYDP 231
             DIG++V + C    L G  L +P +  L   I KL+ +AF  KLLASSP VL +H  YD 
Sbjct:   180 DIGVQVYRKCRLQLLQGNKLANPTDAYLG--IKKLTANAFAQKLLASSPKVLPVHA-YDT 236

Query:   232 VEPNSVSNWLERWSAFHIWKPAPQPKKVSDSKSQKKHVSAQTLEAETGRPKRSVRRNPAA 291
               PNS   WLE WSA   WKP PQPKK    K Q + +    +EAE+ +PK+SVR+ PA+
Sbjct:   237 SNPNSNLIWLENWSASCFWKPVPQPKKTISRKPQNRLL----VEAESAKPKKSVRKVPAS 292

Query:   292 NADSISVHSTPEFERSKRSLKKVSSHPADP-VHENPQSELEKVKRSLRKVHNPLVENSA- 349
             N +S SV ++ EFE+ KRS +KVSS   +P   E+PQ ELEKVKRSLRKVHNP+VE+S  
Sbjct:   293 NFESSSVQTSFEFEKPKRSFRKVSSQSIEPPAVEDPQIELEKVKRSLRKVHNPVVESSIQ 352

Query:   350 PVQS-EIEIEKPNHSLEKL-PTSF-VCHEGLERSLSNSGEKMKKETTLTPSE---LPDVE 403
             P +S   E+EKP   +EK   +S+ + HE  E  ++   EK K+E +  P E     ++E
Sbjct:   353 PQRSPRKEVEKPKLGVEKTRESSYPLVHETAEEPVNVCDEKKKQEISEQPEEEVHALEME 412

Query:   404 T-TPDLVEMNEMSD------VPPGDLAADESKPWMESGGKDETIPMTNGNFEPKEDSTNN 456
               TP  +E NE  D      +   + A  E KP ME   K+E  P  N     KE+S   
Sbjct:   413 VHTPGPLETNEALDSSLVNQIDSNEKAMVEEKPSMEKDTKEEKTPKPNN----KENSAGK 468

Query:   457 ENNKSSRKAAVLTKQEHAE-NGL-QSSPSLPSYMAATESAKAKLRLQGSPRSS-QDSAEK 513
             EN KS +K +  +K E  E NG  ++SPS+PSYM AT+SAKAKLRLQGSP+S+ QD  EK
Sbjct:   469 ENQKSRKKGSATSKTEREESNGHHETSPSIPSYMQATKSAKAKLRLQGSPKSAEQDGTEK 528

Query:   514 NSGTRRHSLPSSTNSKISSQSPRTQRVVHAGGK--NKGDKNHFSSREGNAKVTQAEWRR 570
              +  RRHSLPS  N +I+S SPRT R+ ++G K  NK +K   SSREGNAK T AE +R
Sbjct:   529 ATVPRRHSLPSPGNGRITSHSPRTTRLANSGDKTGNKKEKPLLSSREGNAKTTPAERKR 587




GO:0005516 "calmodulin binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0007020 "microtubule nucleation" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
TAIR|locus:2034929 IQD30 "AT1G18840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058862 IQD29 "AT2G02790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012507 IQD28 "AT1G14380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057459 IQD6 "AT2G26180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130200 IQD19 "AT4G14750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200945 IQD18 "AT1G01110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143503 iqd2 "AT5G03040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090409 IQD5 "AT3G22190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035428 iqd32 "AT1G19870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L4D8IQD31_ARATHNo assigned EC number0.48580.97890.9505yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query570
pfam13178105 pfam13178, DUF4005, Protein of unknown function (D 9e-17
smart0001523 smart00015, IQ, Calmodulin-binding motif 5e-06
pfam0061221 pfam00612, IQ, IQ calmodulin-binding motif 1e-04
>gnl|CDD|221960 pfam13178, DUF4005, Protein of unknown function (DUF4005) Back     alignment and domain information
 Score = 75.7 bits (186), Expect = 9e-17
 Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 7/95 (7%)

Query: 456 NENNKSSRKAAVLTKQEHAENGLQSSPSLPSYMAATESAKAKLRLQGSPR---SSQDSAE 512
           + +  S    +  TK E  +N   SSPSLP+YMAATESAKAK+R Q +PR    +++   
Sbjct: 9   SSSKSSRSSPSNPTKSERDDNSSTSSPSLPNYMAATESAKAKVRSQSAPRQRPETEERES 68

Query: 513 KNSGTRRHSLPSSTNSKISSQSPRTQRVVHAGGKN 547
            +S T+R SLP S++S  SS    +     +GGK 
Sbjct: 69  GSSATKRLSLPVSSSSGGSS----SSSPRTSGGKG 99


This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins. Length = 105

>gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif Back     alignment and domain information
>gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 570
PF13178102 DUF4005: Protein of unknown function (DUF4005) 99.48
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.82
KOG0160862 consensus Myosin class V heavy chain [Cytoskeleton 97.77
KOG0160862 consensus Myosin class V heavy chain [Cytoskeleton 97.65
smart0001526 IQ Short calmodulin-binding motif containing conse 97.29
KOG01641001 consensus Myosin class I heavy chain [Cytoskeleton 96.87
PTZ00014821 myosin-A; Provisional 96.8
KOG0520975 consensus Uncharacterized conserved protein, conta 96.51
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 96.23
KOG2128 1401 consensus Ras GTPase-activating protein family - I 95.63
COG5022 1463 Myosin heavy chain [Cytoskeleton] 95.55
KOG0520975 consensus Uncharacterized conserved protein, conta 95.47
smart0001526 IQ Short calmodulin-binding motif containing conse 94.91
PTZ00014821 myosin-A; Provisional 94.02
KOG2128 1401 consensus Ras GTPase-activating protein family - I 87.66
KOG0377 631 consensus Protein serine/threonine phosphatase RDG 83.14
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 82.29
KOG01641001 consensus Myosin class I heavy chain [Cytoskeleton 81.36
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 80.14
>PF13178 DUF4005: Protein of unknown function (DUF4005) Back     alignment and domain information
Probab=99.48  E-value=6.4e-14  Score=124.24  Aligned_cols=54  Identities=59%  Similarity=0.771  Sum_probs=47.7

Q ss_pred             CCcccccchhHHHhhhccCCCCCCcccc---ccccccccccCCC-CCCCCCCCCCCcc
Q 008320          484 LPSYMAATESAKAKLRLQGSPRSSQDSA---EKNSGTRRHSLPS-STNSKISSQSPRT  537 (570)
Q Consensus       484 ~psym~~tesakaklr~~~spr~~~d~~---~~~~~~rr~slp~-~~ngk~~s~spr~  537 (570)
                      +|+|||+|||||||+|.|++||++++..   ++...++|||||. ..++..++++|++
T Consensus        34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~~~~~~~~~~~~~   91 (102)
T PF13178_consen   34 LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSSNSGSSSSRSPRT   91 (102)
T ss_pred             CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCCCCCCCcCCCCCCcc
Confidence            9999999999999999999999999986   4557889999997 4567888888876



>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] Back     alignment and domain information
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] Back     alignment and domain information
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query570
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 2e-11
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 6e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-04
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 3e-07
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 4e-07
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 7e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-05
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
 Score = 58.3 bits (142), Expect = 2e-11
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 104 RQEKAATKAQAVFRGYLARRAFRALK-GIIRLQALIRGHLVRRQA 147
           +   A  + Q   RG+L R+ +  ++   I +Q  +RG+  R  A
Sbjct: 3   KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYA 47


>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query570
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 99.06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 98.93
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.91
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 98.84
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.34
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 98.13
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 97.67
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 97.62
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 97.39
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 97.24
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 97.22
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 96.96
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 96.8
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 96.58
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 96.42
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 95.46
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.44
4anj_A1052 Unconventional myosin-VI, green fluorescent prote; 92.84
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 89.69
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 86.72
4dck_A168 Sodium channel protein type 5 subunit alpha; IQ-mo 84.9
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
Probab=99.06  E-value=3.6e-10  Score=88.73  Aligned_cols=47  Identities=26%  Similarity=0.416  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHH
Q 008320          104 RQEKAATKAQAVFRGYLARRAFRAL-KGIIRLQALIRGHLVRRQAVAT  150 (570)
Q Consensus       104 r~e~AAI~IQAafRGyLARR~~r~l-kaiVrLQAlvRG~lvRrq~~~~  150 (570)
                      +...||+.||++||||++|+.|..+ .+++.||++|||+++|+.|...
T Consensus         3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~   50 (58)
T 2ix7_C            3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFL   50 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999966 6999999999999999999643



>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 570
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 7e-09
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 0.003
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 1e-07
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 0.004
d1w7ja2730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 0.002
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
 Score = 56.3 bits (135), Expect = 7e-09
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 11/72 (15%)

Query: 101 EKIRQEK---AATKAQAVFRGYLARRAFRAL----KGIIRLQALIRGHLVRRQAVATLGA 153
           E++R +K     T  QA  RG+L R  +RA+    + I  +Q  +R  +  +        
Sbjct: 727 EEMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVK----HWPW 782

Query: 154 MLGLVKLQALVR 165
           M    K++ L++
Sbjct: 783 MKLFFKIKPLLK 794


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query570
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 97.63
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 97.57
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 96.93
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 96.52
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 91.0
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=97.63  E-value=2.5e-05  Score=86.66  Aligned_cols=44  Identities=27%  Similarity=0.382  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHH
Q 008320          105 QEKAATKAQAVFRGYLARRAFRAL----KGIIRLQALIRGHLVRRQAV  148 (570)
Q Consensus       105 ~e~AAI~IQAafRGyLARR~~r~l----kaiVrLQAlvRG~lvRrq~~  148 (570)
                      ...+|+.||++||||++|++|+.+    .+++.||+.+||+++|+.+.
T Consensus       734 l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~~  781 (794)
T d2mysa2         734 LAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWP  781 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            357899999999999999999743    68999999999999998873



>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure