Citrus Sinensis ID: 008320
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 570 | ||||||
| 225456707 | 573 | PREDICTED: protein IQ-DOMAIN 31-like [Vi | 0.977 | 0.972 | 0.590 | 1e-176 | |
| 255540951 | 590 | calmodulin binding protein, putative [Ri | 0.989 | 0.955 | 0.610 | 1e-174 | |
| 118481218 | 592 | unknown [Populus trichocarpa] | 0.987 | 0.951 | 0.594 | 1e-172 | |
| 224124046 | 582 | predicted protein [Populus trichocarpa] | 0.975 | 0.955 | 0.593 | 1e-170 | |
| 449520463 | 599 | PREDICTED: protein IQ-DOMAIN 31-like [Cu | 0.991 | 0.943 | 0.557 | 1e-159 | |
| 449469462 | 599 | PREDICTED: protein IQ-DOMAIN 31-like [Cu | 0.991 | 0.943 | 0.556 | 1e-159 | |
| 356512359 | 586 | PREDICTED: protein IQ-DOMAIN 31-like [Gl | 0.980 | 0.953 | 0.539 | 1e-156 | |
| 356562818 | 587 | PREDICTED: protein IQ-DOMAIN 31-like [Gl | 0.980 | 0.952 | 0.543 | 1e-155 | |
| 357477495 | 584 | IQ domain-containing protein [Medicago t | 0.970 | 0.946 | 0.540 | 1e-154 | |
| 356516764 | 584 | PREDICTED: protein IQ-DOMAIN 31-like [Gl | 0.977 | 0.953 | 0.539 | 1e-146 |
| >gi|225456707|ref|XP_002274035.1| PREDICTED: protein IQ-DOMAIN 31-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 346/586 (59%), Positives = 426/586 (72%), Gaps = 29/586 (4%)
Query: 1 MGKSPAKWIKTVLFGKKSSKSNAFKGREKVANEKEALVAVKASEADAALDPPLDSHPTRN 60
MGKSP KWIKT+LFGKK+SKSN KGREKVANE+E VA KA EAD LDP + S N
Sbjct: 1 MGKSPGKWIKTLLFGKKASKSNFSKGREKVANEREVWVAAKAPEADLGLDPLVASE-APN 59
Query: 61 TIHRDERRLAEDKES---------VDLSLQGSQVTDSQILTLQDASYDPEKIRQEKAATK 111
I ++E E++E+ +D +QG + Q+ TL + PE+IRQE+AATK
Sbjct: 60 IIDKNEMLEFENREASAGGILSGDLDADIQGCR----QLSTLNN----PERIRQERAATK 111
Query: 112 AQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRH 171
AQA FRGYLARRAFRALKGIIRLQALIRGHLVRRQA+ TL MLG+VK+QAL RGR++RH
Sbjct: 112 AQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAICTLYCMLGIVKIQALARGRRIRH 171
Query: 172 SDIGLEVGKTCTPLK-LLGKPLDPIELNLSTRISKLSGSAFISKLLASSPTVLSLHLQYD 230
S++GL V K C +K L GK DP ++ ST+I+K + +AF+ KLLASSPTV+ LHLQYD
Sbjct: 172 SELGLRVNKKCIQVKPLKGKLGDPAGVSSSTQIAKRTANAFVHKLLASSPTVMPLHLQYD 231
Query: 231 PVEPNSVSNWLERWSAFHIWKPAPQPKKVSDSKSQKKHVSAQTLEAETGRPKRSVRRNPA 290
EPNS WL+ WSA H WKP PQP++V DSKSQKK + +E ETGRPKRSVRR PA
Sbjct: 232 SAEPNSDFYWLQCWSASHFWKPIPQPRQVPDSKSQKKQGNPLAIETETGRPKRSVRRIPA 291
Query: 291 ANADSISVHSTPEFERSKRSLKKVSSHPADPVHENPQSELEKVKRSLRKVHNPLVENSAP 350
N DS+S ST EFE+ KR+ KK+SS PADPV E+PQ+ELEKVKR+LRKVHNP+VE+SA
Sbjct: 292 MNVDSVSAQSTTEFEKPKRNFKKLSSRPADPVLEHPQNELEKVKRNLRKVHNPVVESSA- 350
Query: 351 VQSEIEIEKPNHSLEKLPTSFVCHEGLERSLSNSGEKMKKETTLTPSELPDVETT---PD 407
Q E EKP S+EK+ +S H+ LE+S+ +S EKM ET +T S+LP+VETT P
Sbjct: 351 -QPGNETEKPKQSMEKM-SSTPGHDVLEQSMGDSAEKMNMETPVTVSKLPEVETTTEPPA 408
Query: 408 LVEMNEMSDVPPGDLAADESKPWMESGGKDETIPMTNGNFEPKEDSTNNENNKSSRKAAV 467
++ +NE SD D E +P +E+ GKDE IP+ N KED+ +NEN KSSRKA++
Sbjct: 409 VIWVNEASDSLHNDQTVVELQP-VENSGKDENIPVANEELSSKEDAISNENQKSSRKASI 467
Query: 468 LTKQEHAENGLQSSPSLPSYMAATESAKAKLRLQGSPRSSQDSAEKNSGTRRHSLPSSTN 527
K E AENGL+SSP LPSYMA T+SAKAKLR QGSPR QD EKN+ TRRHSLPSSTN
Sbjct: 468 PAKPERAENGLESSPKLPSYMATTQSAKAKLRAQGSPRLGQDVPEKNNITRRHSLPSSTN 527
Query: 528 SKISSQSPRTQRVVHAGGK--NKGDKNHFSSREGNAKV-TQAEWRR 570
K++S SP+TQ+ V GK N+ +++ SS++GNAKV QAEWRR
Sbjct: 528 GKMNSLSPKTQKPVQGNGKGGNRSERSILSSKDGNAKVAVQAEWRR 573
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540951|ref|XP_002511540.1| calmodulin binding protein, putative [Ricinus communis] gi|223550655|gb|EEF52142.1| calmodulin binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|118481218|gb|ABK92559.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224124046|ref|XP_002330091.1| predicted protein [Populus trichocarpa] gi|222871225|gb|EEF08356.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449520463|ref|XP_004167253.1| PREDICTED: protein IQ-DOMAIN 31-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449469462|ref|XP_004152439.1| PREDICTED: protein IQ-DOMAIN 31-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356512359|ref|XP_003524887.1| PREDICTED: protein IQ-DOMAIN 31-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356562818|ref|XP_003549665.1| PREDICTED: protein IQ-DOMAIN 31-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357477495|ref|XP_003609033.1| IQ domain-containing protein [Medicago truncatula] gi|217074616|gb|ACJ85668.1| unknown [Medicago truncatula] gi|355510088|gb|AES91230.1| IQ domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356516764|ref|XP_003527063.1| PREDICTED: protein IQ-DOMAIN 31-like [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 570 | ||||||
| TAIR|locus:2019205 | 587 | IQD31 "AT1G74690" [Arabidopsis | 0.978 | 0.950 | 0.487 | 5.2e-120 | |
| TAIR|locus:2034929 | 572 | IQD30 "AT1G18840" [Arabidopsis | 0.959 | 0.956 | 0.470 | 1.6e-109 | |
| TAIR|locus:2058862 | 636 | IQD29 "AT2G02790" [Arabidopsis | 0.935 | 0.838 | 0.337 | 8.4e-58 | |
| TAIR|locus:2012507 | 664 | IQD28 "AT1G14380" [Arabidopsis | 0.710 | 0.609 | 0.356 | 2.5e-56 | |
| TAIR|locus:2057459 | 416 | IQD6 "AT2G26180" [Arabidopsis | 0.184 | 0.252 | 0.481 | 2.6e-20 | |
| TAIR|locus:2130200 | 387 | IQD19 "AT4G14750" [Arabidopsis | 0.277 | 0.408 | 0.337 | 5.2e-20 | |
| TAIR|locus:2200945 | 527 | IQD18 "AT1G01110" [Arabidopsis | 0.307 | 0.332 | 0.315 | 5.6e-19 | |
| TAIR|locus:2143503 | 461 | iqd2 "AT5G03040" [Arabidopsis | 0.296 | 0.366 | 0.306 | 5.9e-19 | |
| TAIR|locus:2090409 | 422 | IQD5 "AT3G22190" [Arabidopsis | 0.194 | 0.263 | 0.438 | 1.3e-18 | |
| TAIR|locus:2035428 | 794 | iqd32 "AT1G19870" [Arabidopsis | 0.898 | 0.644 | 0.236 | 7.5e-18 |
| TAIR|locus:2019205 IQD31 "AT1G74690" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
Identities = 292/599 (48%), Positives = 378/599 (63%)
Query: 1 MGKSPAKWIKTVLFGKKSSKSNAFKGREKVANEKEALVAVKASEADAALDPPLDSHPTRN 60
MGKS KW+K VL GKK+SKS+ K +E+V + KE LV K E+D D P N
Sbjct: 1 MGKS-TKWLKNVLLGKKTSKSSGSKDKERVVSGKEVLVTSKVEESDVVSDLPSFEVAETN 59
Query: 61 TIHR-----DERRLAEDKESVD-LSLQGSQVTDSQ-ILTLQDASY-DPEKIRQEKAATKA 112
T+ R + + + ++ S D + L + TDSQ + +QD S D E+I++E AAT
Sbjct: 60 TVDRSGGMLETQNVGPEEISDDEIELPEGKSTDSQNVAPVQDHSLSDAERIQREIAATSV 119
Query: 113 QAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHS 172
QA FRGYLARRAF ALKGIIRLQALIRGHLVRRQAVATL +++G+V+LQA RGR++R S
Sbjct: 120 QAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFARGREIRKS 179
Query: 173 DIGLEVGKTCTPLKLLGKPL-DPIELNLSTRISKLSGSAFISKLLASSPTVLSLHLQYDP 231
DIG++V + C L G L +P + L I KL+ +AF KLLASSP VL +H YD
Sbjct: 180 DIGVQVYRKCRLQLLQGNKLANPTDAYLG--IKKLTANAFAQKLLASSPKVLPVHA-YDT 236
Query: 232 VEPNSVSNWLERWSAFHIWKPAPQPKKVSDSKSQKKHVSAQTLEAETGRPKRSVRRNPAA 291
PNS WLE WSA WKP PQPKK K Q + + +EAE+ +PK+SVR+ PA+
Sbjct: 237 SNPNSNLIWLENWSASCFWKPVPQPKKTISRKPQNRLL----VEAESAKPKKSVRKVPAS 292
Query: 292 NADSISVHSTPEFERSKRSLKKVSSHPADP-VHENPQSELEKVKRSLRKVHNPLVENSA- 349
N +S SV ++ EFE+ KRS +KVSS +P E+PQ ELEKVKRSLRKVHNP+VE+S
Sbjct: 293 NFESSSVQTSFEFEKPKRSFRKVSSQSIEPPAVEDPQIELEKVKRSLRKVHNPVVESSIQ 352
Query: 350 PVQS-EIEIEKPNHSLEKL-PTSF-VCHEGLERSLSNSGEKMKKETTLTPSE---LPDVE 403
P +S E+EKP +EK +S+ + HE E ++ EK K+E + P E ++E
Sbjct: 353 PQRSPRKEVEKPKLGVEKTRESSYPLVHETAEEPVNVCDEKKKQEISEQPEEEVHALEME 412
Query: 404 T-TPDLVEMNEMSD------VPPGDLAADESKPWMESGGKDETIPMTNGNFEPKEDSTNN 456
TP +E NE D + + A E KP ME K+E P N KE+S
Sbjct: 413 VHTPGPLETNEALDSSLVNQIDSNEKAMVEEKPSMEKDTKEEKTPKPNN----KENSAGK 468
Query: 457 ENNKSSRKAAVLTKQEHAE-NGL-QSSPSLPSYMAATESAKAKLRLQGSPRSS-QDSAEK 513
EN KS +K + +K E E NG ++SPS+PSYM AT+SAKAKLRLQGSP+S+ QD EK
Sbjct: 469 ENQKSRKKGSATSKTEREESNGHHETSPSIPSYMQATKSAKAKLRLQGSPKSAEQDGTEK 528
Query: 514 NSGTRRHSLPSSTNSKISSQSPRTQRVVHAGGK--NKGDKNHFSSREGNAKVTQAEWRR 570
+ RRHSLPS N +I+S SPRT R+ ++G K NK +K SSREGNAK T AE +R
Sbjct: 529 ATVPRRHSLPSPGNGRITSHSPRTTRLANSGDKTGNKKEKPLLSSREGNAKTTPAERKR 587
|
|
| TAIR|locus:2034929 IQD30 "AT1G18840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2058862 IQD29 "AT2G02790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2012507 IQD28 "AT1G14380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2057459 IQD6 "AT2G26180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2130200 IQD19 "AT4G14750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200945 IQD18 "AT1G01110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2143503 iqd2 "AT5G03040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2090409 IQD5 "AT3G22190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2035428 iqd32 "AT1G19870" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 570 | |||
| pfam13178 | 105 | pfam13178, DUF4005, Protein of unknown function (D | 9e-17 | |
| smart00015 | 23 | smart00015, IQ, Calmodulin-binding motif | 5e-06 | |
| pfam00612 | 21 | pfam00612, IQ, IQ calmodulin-binding motif | 1e-04 |
| >gnl|CDD|221960 pfam13178, DUF4005, Protein of unknown function (DUF4005) | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 9e-17
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 456 NENNKSSRKAAVLTKQEHAENGLQSSPSLPSYMAATESAKAKLRLQGSPR---SSQDSAE 512
+ + S + TK E +N SSPSLP+YMAATESAKAK+R Q +PR +++
Sbjct: 9 SSSKSSRSSPSNPTKSERDDNSSTSSPSLPNYMAATESAKAKVRSQSAPRQRPETEERES 68
Query: 513 KNSGTRRHSLPSSTNSKISSQSPRTQRVVHAGGKN 547
+S T+R SLP S++S SS + +GGK
Sbjct: 69 GSSATKRLSLPVSSSSGGSS----SSSPRTSGGKG 99
|
This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins. Length = 105 |
| >gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif | Back alignment and domain information |
|---|
| >gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 570 | |||
| PF13178 | 102 | DUF4005: Protein of unknown function (DUF4005) | 99.48 | |
| PF00612 | 21 | IQ: IQ calmodulin-binding motif; InterPro: IPR0000 | 97.82 | |
| KOG0160 | 862 | consensus Myosin class V heavy chain [Cytoskeleton | 97.77 | |
| KOG0160 | 862 | consensus Myosin class V heavy chain [Cytoskeleton | 97.65 | |
| smart00015 | 26 | IQ Short calmodulin-binding motif containing conse | 97.29 | |
| KOG0164 | 1001 | consensus Myosin class I heavy chain [Cytoskeleton | 96.87 | |
| PTZ00014 | 821 | myosin-A; Provisional | 96.8 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 96.51 | |
| PF00612 | 21 | IQ: IQ calmodulin-binding motif; InterPro: IPR0000 | 96.23 | |
| KOG2128 | 1401 | consensus Ras GTPase-activating protein family - I | 95.63 | |
| COG5022 | 1463 | Myosin heavy chain [Cytoskeleton] | 95.55 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 95.47 | |
| smart00015 | 26 | IQ Short calmodulin-binding motif containing conse | 94.91 | |
| PTZ00014 | 821 | myosin-A; Provisional | 94.02 | |
| KOG2128 | 1401 | consensus Ras GTPase-activating protein family - I | 87.66 | |
| KOG0377 | 631 | consensus Protein serine/threonine phosphatase RDG | 83.14 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 82.29 | |
| KOG0164 | 1001 | consensus Myosin class I heavy chain [Cytoskeleton | 81.36 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 80.14 |
| >PF13178 DUF4005: Protein of unknown function (DUF4005) | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.4e-14 Score=124.24 Aligned_cols=54 Identities=59% Similarity=0.771 Sum_probs=47.7
Q ss_pred CCcccccchhHHHhhhccCCCCCCcccc---ccccccccccCCC-CCCCCCCCCCCcc
Q 008320 484 LPSYMAATESAKAKLRLQGSPRSSQDSA---EKNSGTRRHSLPS-STNSKISSQSPRT 537 (570)
Q Consensus 484 ~psym~~tesakaklr~~~spr~~~d~~---~~~~~~rr~slp~-~~ngk~~s~spr~ 537 (570)
+|+|||+|||||||+|.|++||++++.. ++...++|||||. ..++..++++|++
T Consensus 34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~~~~~~~~~~~~~ 91 (102)
T PF13178_consen 34 LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSSNSGSSSSRSPRT 91 (102)
T ss_pred CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCCCCCCCcCCCCCCcc
Confidence 9999999999999999999999999986 4557889999997 4567888888876
|
|
| >PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K | Back alignment and domain information |
|---|
| >KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues | Back alignment and domain information |
|---|
| >KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PTZ00014 myosin-A; Provisional | Back alignment and domain information |
|---|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
| >PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K | Back alignment and domain information |
|---|
| >KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5022 Myosin heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
| >smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues | Back alignment and domain information |
|---|
| >PTZ00014 myosin-A; Provisional | Back alignment and domain information |
|---|
| >KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 570 | |||
| 2ix7_C | 58 | Myosin-5A; contractIle protein/metal binding, acti | 2e-11 | |
| 2ix7_C | 58 | Myosin-5A; contractIle protein/metal binding, acti | 6e-04 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-10 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 2e-08 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 5e-06 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 4e-04 | |
| 1kk8_A | 837 | Myosin heavy chain, striated muscle; actin-detache | 3e-07 | |
| 2ycu_A | 995 | Non muscle myosin 2C, alpha-actinin; motor protein | 4e-07 | |
| 1g8x_A | 1010 | Myosin II heavy chain fused to alpha-actinin 3; mo | 7e-06 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 3e-05 |
| >2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-11
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 104 RQEKAATKAQAVFRGYLARRAFRALK-GIIRLQALIRGHLVRRQA 147
+ A + Q RG+L R+ + ++ I +Q +RG+ R A
Sbjct: 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYA 47
|
| >2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 570 | |||
| 2ix7_C | 58 | Myosin-5A; contractIle protein/metal binding, acti | 99.06 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 98.93 | |
| 1n2d_C | 48 | IQ2 and IQ3 motifs from MYO2P, A class V myosin; p | 98.91 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 98.84 | |
| 1n2d_C | 48 | IQ2 and IQ3 motifs from MYO2P, A class V myosin; p | 98.34 | |
| 2ix7_C | 58 | Myosin-5A; contractIle protein/metal binding, acti | 98.13 | |
| 1wdc_A | 64 | Scallop myosin; calcium binding protein, muscle pr | 97.67 | |
| 2bl0_A | 63 | Major plasmodial myosin heavy chain; muscle protei | 97.62 | |
| 1kk8_A | 837 | Myosin heavy chain, striated muscle; actin-detache | 97.39 | |
| 1wdc_A | 64 | Scallop myosin; calcium binding protein, muscle pr | 97.24 | |
| 2bl0_A | 63 | Major plasmodial myosin heavy chain; muscle protei | 97.22 | |
| 2l53_B | 31 | CAM, voltage-gated sodium channel type V alpha iso | 96.96 | |
| 2kxw_B | 27 | Sodium channel protein type 2 subunit alpha; actio | 96.8 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 96.58 | |
| 1kk8_A | 837 | Myosin heavy chain, striated muscle; actin-detache | 96.42 | |
| 3gn4_A | 148 | Myosin-VI; unconventional myosin, motility, lever | 95.46 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 95.44 | |
| 4anj_A | 1052 | Unconventional myosin-VI, green fluorescent prote; | 92.84 | |
| 1w7j_A | 795 | Myosin VA; motor protein, unconventional myosin, m | 89.69 | |
| 3gn4_A | 148 | Myosin-VI; unconventional myosin, motility, lever | 86.72 | |
| 4dck_A | 168 | Sodium channel protein type 5 subunit alpha; IQ-mo | 84.9 |
| >2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.6e-10 Score=88.73 Aligned_cols=47 Identities=26% Similarity=0.416 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHH
Q 008320 104 RQEKAATKAQAVFRGYLARRAFRAL-KGIIRLQALIRGHLVRRQAVAT 150 (570)
Q Consensus 104 r~e~AAI~IQAafRGyLARR~~r~l-kaiVrLQAlvRG~lvRrq~~~~ 150 (570)
+...||+.||++||||++|+.|..+ .+++.||++|||+++|+.|...
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~ 50 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999966 6999999999999999999643
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} | Back alignment and structure |
|---|
| >1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A | Back alignment and structure |
|---|
| >2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} | Back alignment and structure |
|---|
| >1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... | Back alignment and structure |
|---|
| >1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A | Back alignment and structure |
|---|
| >2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} | Back alignment and structure |
|---|
| >2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... | Back alignment and structure |
|---|
| >3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} | Back alignment and structure |
|---|
| >1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A | Back alignment and structure |
|---|
| >3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} | Back alignment and structure |
|---|
| >4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 570 | ||||
| d2mysa2 | 794 | c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain | 7e-09 | |
| d2mysa2 | 794 | c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain | 0.003 | |
| d1kk8a2 | 789 | c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain | 1e-07 | |
| d1kk8a2 | 789 | c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain | 0.004 | |
| d1w7ja2 | 730 | c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick | 0.002 |
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Score = 56.3 bits (135), Expect = 7e-09
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 101 EKIRQEK---AATKAQAVFRGYLARRAFRAL----KGIIRLQALIRGHLVRRQAVATLGA 153
E++R +K T QA RG+L R +RA+ + I +Q +R + +
Sbjct: 727 EEMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVK----HWPW 782
Query: 154 MLGLVKLQALVR 165
M K++ L++
Sbjct: 783 MKLFFKIKPLLK 794
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 | Back information, alignment and structure |
|---|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 | Back information, alignment and structure |
|---|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 | Back information, alignment and structure |
|---|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 570 | |||
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 97.63 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 97.57 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 96.93 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 96.52 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 91.0 |
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=97.63 E-value=2.5e-05 Score=86.66 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHH
Q 008320 105 QEKAATKAQAVFRGYLARRAFRAL----KGIIRLQALIRGHLVRRQAV 148 (570)
Q Consensus 105 ~e~AAI~IQAafRGyLARR~~r~l----kaiVrLQAlvRG~lvRrq~~ 148 (570)
...+|+.||++||||++|++|+.+ .+++.||+.+||+++|+.+.
T Consensus 734 l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~~ 781 (794)
T d2mysa2 734 LAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWP 781 (794)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 357899999999999999999743 68999999999999998873
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|