Citrus Sinensis ID: 008326

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570
MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGPAKHNQGSEIPNRSELSANLDVRNVSNMPPPSKLVQPVDNGMPHPPPRNMPPPPPPKFTLLAPTAKLHDKNNSLNKTKSDNIPVVSDTLVKLMEYGEDDDD
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHHHHccHHHHHHHHHHHccEEEccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccccccccEEEEEEccccHHHHHHHHHHccEEEEEEccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccc
cccccccccccccccccccccccHHHHHHcccccccHHHccccccccccccccccccccccccccccHcccccHHHccccccHHcccccccccccHHccccccEEEEEEEccccHHHHHHcccccHHHHHHHHcccEEEEccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEcccccccccEEEEEEccccccHHHHHHHcccEEEEEEcccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccHHHccccHHccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccHHHHHHHHccccccc
mtedshhtfssddsaistdgssqtrqrkkrkwdqpaeslinfplasfgislpgvpvapvvpapaaaafftnppvasgatvppvvlqgplppkfnqpkvqDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVitrgkyrlpnappdgekplylhISAGAHVKTAERILAVDHAAAMVEEMLKqghagfptlqtvmgngvqaMSTSVFLGFDADASLNIAarirgpndqyINHIMNETGATVLLrgrgsgnseglqgeevhqplhlflssnnpkSLEEAKRLAENLLDTISaecgasrvssckvynavpppqqlltgiqgfgneqklnagsAVILTSTVnlssvplapsvpgvttVYSQGmmlqsggilnsvqpqqnivgypqpvstggtsysgyegiypqatPLQQVALALRqssspltslvaptasvsstattsttstamsekekrppqkrkfqelpvgskgpakhnqgseipnrselsanldvrnvsnmpppsklvqpvdngmphppprnmppppppkftllaptaklhdknnslnktksdnipvvSDTLVKLMEYGEDDDD
mtedshhtfssddsaistdgssqtrqrkkrkwdqpAESLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAReivindsessvrykltkrhtqeeiqkctgavvitrgkyRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQSSSPLTslvaptasvsstattsttstamsekekrppqkrkfqelpvgskgpakhnqgseipnrSELSANLDVRNVSNMPPPSKLVQPVDNGMPHPPPRNMPPPPPPKFTLLAPTAKLHDKnnslnktksdnipvvsdTLVKLMEYGEDDDD
MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLpgvpvapvvpapaaaafftnppvaSGATvppvvlqgplppKFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVstggtsysgyEGIYPQATPLQQVALALRQSSSPLtslvaptasvsstattsttstamsEKEKRPPQKRKFQELPVGSKGPAKHNQGSEIPNRSELSANLDVRNVSNMPPPSKLVQPVDNGMphppprnmppppppKFTLLAPTAKLHDKNNSLNKTKSDNIPVVSDTLVKLMEYGEDDDD
*************************************SLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLP*KFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPN*****EKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLR***************************************NLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVAL***********************************************************************************************************************************************************
*******************************************************************************************************IAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVI*********************ISAGA*************************************NGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRG*****************LHLFLSSNNPKSLEEAKRLAENLLDTISAECG**********************************************************************************************TSYSGYEGIYP********************************************************************************************************************************************************LV****Y******
**********************************PAESLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQS***************************************FQELP**************IPNRSELSANLDVRNVSNMPPPSKLVQPVDNGMPHPPPRNMPPPPPPKFTLLAPTAKLHDKNNSLNKTKSDNIPVVSDTLVKLMEYGEDDDD
*******************************WDQPAESLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASG***************FNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQGH************GVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQSS***************************************************************************************************PPP**K*******AKL********KT*SDNIPVVSDTLVKLMEYG*****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGPAKHNQGSEIPNRSELSANLDVRNVSNMPPPSKLVQPVDNGMPHPPPRNMPPPPPPKFTLLAPTAKLHDKNNSLNKTKSDNIPVVSDTLVKLMEYGEDDDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query570 2.2.26 [Sep-21-2011]
Q9LIA4578 Protein RIK OS=Arabidopsi yes no 0.912 0.899 0.501 1e-137
Q32SG5616 Protein RIK OS=Zea mays P N/A no 0.864 0.800 0.491 1e-112
Q2NLB0585 UPF0469 protein KIAA0907 N/A no 0.340 0.331 0.329 2e-26
Q6NZ18570 UPF0469 protein KIAA0907 yes no 0.331 0.331 0.333 3e-26
A0JM64612 UPF0469 protein KIAA0907 yes no 0.340 0.316 0.324 6e-26
Q5ZL54619 UPF0469 protein KIAA0907 yes no 0.340 0.313 0.320 4e-25
Q3TCX3612 UPF0469 protein KIAA0907 yes no 0.461 0.429 0.304 4e-25
Q7Z7F0614 UPF0469 protein KIAA0907 yes no 0.340 0.315 0.320 4e-25
Q09911534 Uncharacterized protein C yes no 0.440 0.470 0.233 2e-11
>sp|Q9LIA4|RIK_ARATH Protein RIK OS=Arabidopsis thaliana GN=RIK PE=1 SV=2 Back     alignment and function desciption
 Score =  490 bits (1261), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 304/606 (50%), Positives = 385/606 (63%), Gaps = 86/606 (14%)

Query: 1   MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGV-PVAPV 59
           MTED+         + +T+ +S+TRQR+KRKWD+PAE L+     + G++ P + P+   
Sbjct: 1   MTEDNDEARVPLSDSSTTNDASRTRQRRKRKWDKPAEQLV-----AAGVAFPQLLPLGNT 55

Query: 60  VPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRY 119
           +  P+ +      P+    +VP  V      PK NQPK+QDE+IIAREIVIND+E+S+R+
Sbjct: 56  MNVPSMS------PLLQTLSVPLAV------PKVNQPKIQDEVIIAREIVINDAEASLRH 103

Query: 120 KLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVK---TAERILAV 176
           +LTKR TQE+IQ+ TGAVVITRGKYR PNAPPDGEKPLYLHISA A ++   T ERILAV
Sbjct: 104 RLTKRSTQEDIQRSTGAVVITRGKYRPPNAPPDGEKPLYLHISAAAQLQLKETTERILAV 163

Query: 177 DHAAAMVEEMLKQ---GHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPND 233
           D AAAM+EEM+KQ      G   LQTV     + +ST V+LGF+AD S N+AARIRGPND
Sbjct: 164 DRAAAMIEEMMKQKSISQIGSVGLQTV-----KMLSTCVYLGFEADPSSNVAARIRGPND 218

Query: 234 QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 293
           QYINHIMNETGATV+LRGRGSG+ E   G+E   PLHL LS +NPKS+++AKRLAENL+D
Sbjct: 219 QYINHIMNETGATVVLRGRGSGSLENQHGDEAQLPLHLLLSGSNPKSIDDAKRLAENLMD 278

Query: 294 TISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAP 353
           TIS E GASRVSS KVY AVPPPQQL++G  G   E + N  S   L +++ +++ P A 
Sbjct: 279 TISVEFGASRVSSSKVYGAVPPPQQLISGAPGSDQENQ-NLISTYGLMTSIPITAPPYAV 337

Query: 354 S---VPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPL 410
           S   V   T++Y Q  ++QS GI N         G  QPV+ GGTSYSGY GIYPQATPL
Sbjct: 338 SSFPVTPATSLYPQFPVMQSLGISNG--------GPSQPVA-GGTSYSGYAGIYPQATPL 388

Query: 411 QQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGP 470
           QQVA  L+QS SP+ S V PT  +++T+ +  +  A +E E+RPP+KRKFQELP   K P
Sbjct: 389 QQVAQVLKQSISPVISTVPPTM-LTATSLSIPSDNASNEMERRPPRKRKFQELPADCKVP 447

Query: 471 AKHNQGSEIPNRSEL--SANLDVRNV--------------------SNMPPPSKLVQPVD 508
            K  Q SE+    ++  SAN  VR+                       M PPS       
Sbjct: 448 EKDKQQSELAMTGDVTPSAN-RVRSPPSPRSVMPPPPPKTIAPPPSKTMSPPS------S 500

Query: 509 NGMPHPPPRN--MPP-------PPPPKFTLLAPTAKLHDKNNSLNKTKSDNIPVVSDTLV 559
             M  PPPR+  M P       PPPP+FTL    ++L D + S+ K        V DTL+
Sbjct: 501 KSMLPPPPRSKTMSPLSSKSMLPPPPRFTLTTQRSRLQDNHISVKKPNP-----VPDTLI 555

Query: 560 KLMEYG 565
           KLMEYG
Sbjct: 556 KLMEYG 561

Arabidopsis thaliana (taxid: 3702)
>sp|Q32SG5|RIK_MAIZE Protein RIK OS=Zea mays PE=1 SV=1 Back     alignment and function description
>sp|Q2NLB0|K0907_XENLA UPF0469 protein KIAA0907 homolog OS=Xenopus laevis PE=2 SV=1 Back     alignment and function description
>sp|Q6NZ18|K0907_DANRE UPF0469 protein KIAA0907 homolog OS=Danio rerio PE=2 SV=1 Back     alignment and function description
>sp|A0JM64|K0907_XENTR UPF0469 protein KIAA0907 homolog OS=Xenopus tropicalis PE=2 SV=1 Back     alignment and function description
>sp|Q5ZL54|K0907_CHICK UPF0469 protein KIAA0907 homolog OS=Gallus gallus GN=RCJMB04_7l9 PE=2 SV=1 Back     alignment and function description
>sp|Q3TCX3|K0907_MOUSE UPF0469 protein KIAA0907 OS=Mus musculus GN=Kiaa0907 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z7F0|K0907_HUMAN UPF0469 protein KIAA0907 OS=Homo sapiens GN=KIAA0907 PE=1 SV=1 Back     alignment and function description
>sp|Q09911|YAJE_SCHPO Uncharacterized protein C30D11.14c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC30D11.14c PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query570
296082200659 unnamed protein product [Vitis vinifera] 0.947 0.819 0.613 1e-168
356568732654 PREDICTED: protein RIK-like [Glycine max 0.966 0.842 0.556 1e-156
356523622640 PREDICTED: protein RIK-like [Glycine max 0.966 0.860 0.571 1e-154
359488525566 PREDICTED: protein RIK-like [Vitis vinif 0.777 0.782 0.645 1e-152
255573372586 conserved hypothetical protein [Ricinus 0.880 0.856 0.576 1e-150
224141071497 predicted protein [Populus trichocarpa] 0.807 0.925 0.621 1e-148
42565288578 protein RIK [Arabidopsis thaliana] gi|15 0.912 0.899 0.501 1e-136
297815272592 hypothetical protein ARALYDRAFT_905257 [ 0.936 0.902 0.491 1e-135
11994521405 unnamed protein product [Arabidopsis tha 0.654 0.920 0.600 1e-118
357113418661 PREDICTED: protein RIK-like [Brachypodiu 0.761 0.656 0.522 1e-113
>gi|296082200|emb|CBI21205.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  599 bits (1545), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 363/592 (61%), Positives = 412/592 (69%), Gaps = 52/592 (8%)

Query: 17  STDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGV----PVAPVVPAPAAAAFFTNP 72
           S+D +S  RQRKKRKWDQPAESL+     S G++LPGV     V P+V  P A     + 
Sbjct: 57  SSDEASAIRQRKKRKWDQPAESLV-----SAGVALPGVLPLGNVGPLVGIPLAGVAPPSS 111

Query: 73  PVASGATVPPVVLQGPLPP-------KFNQPKVQDELIIAREIVINDSESSVRYKLTKRH 125
            + +  T+PPV     +         K NQPK+QDELI AREI+IND+ES+VRYKLTKR 
Sbjct: 112 ALLTNVTIPPVFQTSSIQQHASAIVQKLNQPKIQDELI-AREIIINDAESTVRYKLTKRQ 170

Query: 126 TQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVK-TAERILAVDHAAAMVE 184
            QEEIQKCTGAVVITRGKYR PNA PDGEKPLYLHISAGAH+K TAERI AVD AAAMVE
Sbjct: 171 MQEEIQKCTGAVVITRGKYRPPNALPDGEKPLYLHISAGAHLKDTAERIKAVDRAAAMVE 230

Query: 185 EMLKQGH--AGFPTLQTVMGN-GV-QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIM 240
           EMLKQG      P+   + GN GV QA ST VFLGF+AD SLNIAA IRGPNDQYINHIM
Sbjct: 231 EMLKQGQNSESVPSNSHLAGNTGVTQAPSTCVFLGFEADPSLNIAACIRGPNDQYINHIM 290

Query: 241 NETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECG 300
           NETGATV LRGRGSGNSE   GE   QPLHLFLSSNN K LE+AK LAENLLDTI AECG
Sbjct: 291 NETGATVSLRGRGSGNSESPNGEG-QQPLHLFLSSNNLKGLEDAKLLAENLLDTICAECG 349

Query: 301 ASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGS-AVILTSTVNLSSVPLAP--SVPG 357
           ASR SSCKVY AVPPPQQLL G+Q  GNE  +   S A + +S V+ +  PL    +VPG
Sbjct: 350 ASRASSCKVYGAVPPPQQLLVGVQSSGNELNVKTSSTACLASSAVSSTPTPLVSPLTVPG 409

Query: 358 VTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALAL 417
           V+T +SQG + Q GG  NS QPQ N+V YP P  T GTSYSGY GIYPQATPLQQVALAL
Sbjct: 410 VSTGFSQGAVSQCGGFFNSGQPQSNLVCYPPPSLTAGTSYSGYGGIYPQATPLQQVALAL 469

Query: 418 RQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGPAKHNQGS 477
           RQS SP+TS +AP+ S +ST   S+ ++  SEKEKR PQ+RKFQELPV  KGP K  QG 
Sbjct: 470 RQSPSPVTSTIAPSTSSASTVPMSSAAS-FSEKEKRLPQRRKFQELPVALKGPTKPQQGL 528

Query: 478 EIPNRSELSANLDVRNVSNMPPPSKLVQPVDNGMP------------------HPPPRNM 519
           ++P  SE ++ L VRN S MP P KLVQP  +GMP                    P R M
Sbjct: 529 QLP--SETTSGLTVRNSSTMPAPRKLVQPSSSGMPPPPPKGTMGPLPPPPPKFSSPARTM 586

Query: 520 P-PPPPPKFTLLAPTAKLHDKNNSLNKTKSDNIPVVSDTLVKLMEYGEDDDD 570
             PPPPPKF       ++ DK N LNK+KSD +P   DTL KLMEYGE+DDD
Sbjct: 587 APPPPPPKFNSSTTIPEVDDK-NVLNKSKSDTVP---DTLSKLMEYGEEDDD 634

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356568732|ref|XP_003552564.1| PREDICTED: protein RIK-like [Glycine max] Back     alignment and taxonomy information
>gi|356523622|ref|XP_003530436.1| PREDICTED: protein RIK-like [Glycine max] Back     alignment and taxonomy information
>gi|359488525|ref|XP_003633772.1| PREDICTED: protein RIK-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255573372|ref|XP_002527612.1| conserved hypothetical protein [Ricinus communis] gi|223532986|gb|EEF34751.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224141071|ref|XP_002323898.1| predicted protein [Populus trichocarpa] gi|222866900|gb|EEF04031.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|42565288|ref|NP_566850.3| protein RIK [Arabidopsis thaliana] gi|156633616|sp|Q9LIA4.2|RIK_ARATH RecName: Full=Protein RIK; AltName: Full=Rough sheath 2-interacting KH domain protein; Short=RS2-interacting KH domain protein gi|62997489|gb|AAY24687.1| KH-domain protein [Arabidopsis thaliana] gi|332644059|gb|AEE77580.1| protein RIK [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297815272|ref|XP_002875519.1| hypothetical protein ARALYDRAFT_905257 [Arabidopsis lyrata subsp. lyrata] gi|297321357|gb|EFH51778.1| hypothetical protein ARALYDRAFT_905257 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|11994521|dbj|BAB02585.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357113418|ref|XP_003558500.1| PREDICTED: protein RIK-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query570
TAIR|locus:2093792578 RIK "RS2-interacting KH protei 0.803 0.792 0.5 1.6e-115
UNIPROTKB|Q32SG5616 Q32SG5 "Protein RIK" [Zea mays 0.712 0.659 0.506 8.6e-100
MGI|MGI:1921450612 2810403A07Rik "RIKEN cDNA 2810 0.194 0.181 0.382 2.7e-22
ASPGD|ASPL0000075827466 AN4431 [Emericella nidulans (t 0.317 0.388 0.277 1.7e-11
POMBASE|SPAC30D11.14c534 SPAC30D11.14c "RNA-binding pro 0.264 0.282 0.254 1.9e-11
TAIR|locus:2093792 RIK "RS2-interacting KH protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1059 (377.8 bits), Expect = 1.6e-115, Sum P(2) = 1.6e-115
 Identities = 256/512 (50%), Positives = 313/512 (61%)

Query:    92 KFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPP 151
             K NQPK+QDE+IIAREIVIND+E+S+R++LTKR TQE+IQ+ TGAVVITRGKYR PNAPP
Sbjct:    76 KVNQPKIQDEVIIAREIVINDAEASLRHRLTKRSTQEDIQRSTGAVVITRGKYRPPNAPP 135

Query:   152 DGEKPLYLHISAGAHVK---TAERILAVDHAAAMVEEMLKQ---GHAGFPTLQTVMGNGV 205
             DGEKPLYLHISA A ++   T ERILAVD AAAM+EEM+KQ      G   LQTV     
Sbjct:   136 DGEKPLYLHISAAAQLQLKETTERILAVDRAAAMIEEMMKQKSISQIGSVGLQTV----- 190

Query:   206 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEV 265
             + +ST V+LGF+AD S N+AARIRGPNDQYINHIMNETGATV+LRGRGSG+ E   G+E 
Sbjct:   191 KMLSTCVYLGFEADPSSNVAARIRGPNDQYINHIMNETGATVVLRGRGSGSLENQHGDEA 250

Query:   266 HQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQG 325
               PLHL LS +NPKS+++AKRLAENL+DTIS E GASRVSS KVY AVPPPQQL++G  G
Sbjct:   251 QLPLHLLLSGSNPKSIDDAKRLAENLMDTISVEFGASRVSSSKVYGAVPPPQQLISGAPG 310

Query:   326 FGNEQKLNAGSAVILTSTVNLSSVPLAPS---VPGVTTVYSQGMMLQSGGILNSVQPQQN 382
                E + N  S   L +++ +++ P A S   V   T++Y Q  ++QS GI N       
Sbjct:   311 SDQENQ-NLISTYGLMTSIPITAPPYAVSSFPVTPATSLYPQFPVMQSLGISNG------ 363

Query:   383 IVGYPQPVXXXXXXXXXXEGIYPQATPLQQVALALRQSSSPLXXXXXXXXXXXXXXXXXX 442
               G  QPV           GIYPQATPLQQVA  L+QS SP+                  
Sbjct:   364 --GPSQPVAGGTSYSGYA-GIYPQATPLQQVAQVLKQSISPVISTVPPTMLTATSLSIPS 420

Query:   443 XXXXXXEKEKRPPQKRKFQELPVGSKGPAKHNQGSEIPNRSEL--SANL-----DVRNVS 495
                   E E+RPP+KRKFQELP   K P K  Q SE+    ++  SAN        R+V 
Sbjct:   421 DNASN-EMERRPPRKRKFQELPADCKVPEKDKQQSELAMTGDVTPSANRVRSPPSPRSVM 479

Query:   496 NMPPPSKLVQPVDNGMXXXXXXX---------XXXXXXXK--------FTLLAPTAKLHD 538
               PPP  +  P    M                       K        FTL    ++L D
Sbjct:   480 PPPPPKTIAPPPSKTMSPPSSKSMLPPPPRSKTMSPLSSKSMLPPPPRFTLTTQRSRLQD 539

Query:   539 KNNSLNKTKSDNIPVVSDTLVKLMEYGEDDDD 570
               N ++  K + +P   DTL+KLMEYG+D+DD
Sbjct:   540 --NHISVKKPNPVP---DTLIKLMEYGDDEDD 566
GO:0005634 "nucleus" evidence=ISM;TAS
GO:0008150 "biological_process" evidence=ND
GO:0003723 "RNA binding" evidence=TAS
UNIPROTKB|Q32SG5 Q32SG5 "Protein RIK" [Zea mays (taxid:4577)] Back     alignment and assigned GO terms
MGI|MGI:1921450 2810403A07Rik "RIKEN cDNA 2810403A07 gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ASPGD|ASPL0000075827 AN4431 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC30D11.14c SPAC30D11.14c "RNA-binding protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LIA4RIK_ARATHNo assigned EC number0.50160.91220.8996yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 570
KOG1960531 consensus Predicted RNA-binding protein, contains 100.0
KOG0119554 consensus Splicing factor 1/branch point binding p 99.95
cd02395120 SF1_like-KH Splicing factor 1 (SF1) K homology RNA 99.92
KOG1588259 consensus RNA-binding protein Sam68 and related KH 99.88
COG5176269 MSL5 Splicing factor (branch point binding protein 99.85
KOG1960531 consensus Predicted RNA-binding protein, contains 99.24
KOG1676600 consensus K-homology type RNA binding proteins [RN 99.11
KOG0334997 consensus RNA helicase [RNA processing and modific 98.98
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 98.82
PRK13763180 putative RNA-processing protein; Provisional 98.78
KOG1676600 consensus K-homology type RNA binding proteins [RN 98.73
cd0010564 KH-I K homology RNA-binding domain, type I. KH bin 98.49
cd0239361 PNPase_KH Polynucleotide phosphorylase (PNPase) K 98.42
smart0032269 KH K homology RNA-binding domain. 98.37
PF0001360 KH_1: KH domain syndrome, contains KH motifs.; Int 98.31
cd0239462 vigilin_like_KH K homology RNA-binding domain_vigi 98.07
cd0239665 PCBP_like_KH K homology RNA-binding domain, PCBP_l 97.96
KOG2191402 consensus RNA-binding protein NOVA1/PASILLA and re 97.93
KOG0119554 consensus Splicing factor 1/branch point binding p 97.69
PF1301443 KH_3: KH domain 97.67
PRK13763180 putative RNA-processing protein; Provisional 97.42
KOG2193584 consensus IGF-II mRNA-binding protein IMP, contain 97.39
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 97.24
cd02395120 SF1_like-KH Splicing factor 1 (SF1) K homology RNA 97.08
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 97.07
COG1094194 Predicted RNA-binding protein (contains KH domains 96.97
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 96.94
KOG2193584 consensus IGF-II mRNA-binding protein IMP, contain 96.87
KOG2190485 consensus PolyC-binding proteins alphaCP-1 and rel 96.76
PLN00207891 polyribonucleotide nucleotidyltransferase; Provisi 96.61
PRK11824693 polynucleotide phosphorylase/polyadenylase; Provis 95.78
KOG2191402 consensus RNA-binding protein NOVA1/PASILLA and re 95.33
PRK04163235 exosome complex RNA-binding protein Rrp4; Provisio 95.27
KOG2874356 consensus rRNA processing protein [Translation, ri 94.71
KOG2814345 consensus Transcription coactivator complex, P50 c 93.67
PRK00106535 hypothetical protein; Provisional 92.63
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 92.59
KOG1067760 consensus Predicted RNA-binding polyribonucleotide 92.49
PRK12704520 phosphodiesterase; Provisional 92.44
COG1185692 Pnp Polyribonucleotide nucleotidyltransferase (pol 92.24
KOG0336 629 consensus ATP-dependent RNA helicase [RNA processi 91.4
KOG1588259 consensus RNA-binding protein Sam68 and related KH 91.3
KOG2190485 consensus PolyC-binding proteins alphaCP-1 and rel 90.7
KOG2192390 consensus PolyC-binding hnRNP-K protein HRB57A/hnR 89.94
cd0239361 PNPase_KH Polynucleotide phosphorylase (PNPase) K 85.69
KOG2113394 consensus Predicted RNA binding protein, contains 83.14
PF0001360 KH_1: KH domain syndrome, contains KH motifs.; Int 82.56
PRK12705508 hypothetical protein; Provisional 82.21
COG5176269 MSL5 Splicing factor (branch point binding protein 81.89
KOG2192390 consensus PolyC-binding hnRNP-K protein HRB57A/hnR 81.64
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-37  Score=322.90  Aligned_cols=371  Identities=18%  Similarity=0.142  Sum_probs=255.2

Q ss_pred             HhhhccCcchhhhccCcc--ccCCCCCCCCCC-CCCCC--ccccccccCCCcccCCCCCCCccccCCCCCCCCCCCCCCc
Q 008326           27 RKKRKWDQPAESLINFPL--ASFGISLPGVPV-APVVP--APAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDE  101 (570)
Q Consensus        27 r~krkwdqpae~~~~~pl--~~~g~~~p~~~~-~~~~~--aa~~~a~~~~~~~~~~~~vpp~~~~~s~~~k~~~~k~~de  101 (570)
                      -+.|+|||+++.=..+++  .+.|...|+... .+...  ++++-++.+|.-+-..-..-+. +-.+.+.+...++..|+
T Consensus        13 ~~~~~WD~~~~~d~~~~~~~~~s~~~~p~eS~~~~~~~h~~~~s~s~~~N~~~~~k~~~~~~-~Na~~~i~~p~N~~K~~   91 (531)
T KOG1960|consen   13 NYSRDWDSRFTEDSYSRRDSQRSGNEAPRESRYYRKEEHLQERSRSRSPNRDSRWKSSSSGF-ANAHPPIEEPTNNGKEA   91 (531)
T ss_pred             CccccccCCCCCccccCchhhhccCCCCCcccccCcchhhhhhhhccCcchhcccccccccc-ccccchhhcccccchhH
Confidence            467899999975444333  222444555332 22222  4555567788755321111111 11122224446777788


Q ss_pred             eeEEeEEEcCCCCccccceecchhHHHHHHHHhCCeEeeeccccCCCCC--CCCCCCeEEEEecccccchHHHHHHHHHH
Q 008326          102 LIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAP--PDGEKPLYLHISAGAHVKTAERILAVDHA  179 (570)
Q Consensus       102 ~~f~aEIEINDlPq~~Ry~LTKg~Tq~eIqe~TGA~VtTRGrYyPPg~~--~~gepPLYL~Ieg~telnT~ERikaVD~A  179 (570)
                      + ..++.+|||.+++|||.+|||.++++|.+++|+.|.+||+|++++..  .++++||||||.+.+.       +++++|
T Consensus        92 ~-~~a~~~iN~~~~~~~~~~TRg~~~d~Ie~~~G~~~~~RGs~~~~El~~vg~~~~pLv~hI~~~T~-------Ei~~~A  163 (531)
T KOG1960|consen   92 A-AAAARRINESLQSTKATSTRGTSYDHIEGITGTTSASRGSAPAPELPPVGSSEGPLVDHIPPSTA-------EITSKA  163 (531)
T ss_pred             H-HHHHHHhhcccccccceeccchhHHhhhhhccceeeccCCCCCccCCCCCCCCCcceeecCCccH-------HHHHHH
Confidence            8 48899999999999999999999999999999999999999999974  5789999999999875       699999


Q ss_pred             HHHHHHHHHcCCC----------CCCcc--c-------cccCCCcccceeEEEecCCCCCCCceeeeEeCCCchhHHHHH
Q 008326          180 AAMVEEMLKQGHA----------GFPTL--Q-------TVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIM  240 (570)
Q Consensus       180 vskIkEiLke~P~----------~~p~~--~-------~p~~~G~k~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq  240 (570)
                      +++|+-..+++..          +.+.+  +       .++..|+++++ |+||++| +|.||+.+..-|++..||.+|+
T Consensus       164 i~RIkgv~~~~~~~~n~~~V~i~~~~sP~~~i~~~V~~~~f~~G~~Y~~-k~~v~~~-~P~~~~K~~~~~r~d~~La~~~  241 (531)
T KOG1960|consen  164 IERIKGVFMQDVEINNVRNVYILVRASPLSEIENKVGVQLFSKGRYYPN-KALATDK-DPPLYLKIVSHNRKDLTLALQE  241 (531)
T ss_pred             HhhCccceeecccccccceEEEeecCCchhhhccccccccccccccchh-heecccC-CcchhhhhhccCccchhhhhhh
Confidence            9999966655421          11111  1       23577888888 9999999 9999999999999999999999


Q ss_pred             HhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcccccc-----ccccc-cCCC
Q 008326          241 NETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVS-----SCKVY-NAVP  314 (570)
Q Consensus       241 ~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~LiEnLL~tV~eE~~a~r~~-----~~k~y-~avp  314 (570)
                      .||++++.|||||||.+|++.|+|++||||++|+|.+.+.+.+||++|+||+++|+.+|.+|--.     .+..| ....
T Consensus       242 ie~~i~~l~~Gr~SG~iEP~~G~EsnEPMYI~i~h~~~~g~~~A~r~~~nl~~~v~~~~sr~~~~~~~~~p~~~y~~~~~  321 (531)
T KOG1960|consen  242 IESWINPLIDGRRSGRREPNEGNESNEPMYIFSTHGNGNGENGAPRRKWNLEEKVYINLSRGFHRQAIVGPQGAYVKHIQ  321 (531)
T ss_pred             hhhhhhhhhccccccccCcccccccCCceeEEeecCCchhhccchhHHHhHHHHHHHHhhhhhhhcccccCCcccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999876211     11222 2222


Q ss_pred             CchhhhccccCCC---CccccCccccceeccccccCCCCCCCCCCccceeeecceeecccc--ccccC--CCCCCccCCC
Q 008326          315 PPQQLLTGIQGFG---NEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGG--ILNSV--QPQQNIVGYP  387 (570)
Q Consensus       315 ppqqll~gv~~s~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~--~~~~~--~~~~~~~~~~  387 (570)
                      ++|.-+-.+..++   +++..|--+-                ...++-.++......|.--  .-.++  -+++-.+--.
T Consensus       322 ~~~~~~~~~~g~~s~~i~p~~~~~~~----------------~p~~~~~~~~~~~~~~~~~~~~~~~i~~v~~qy~~~~~  385 (531)
T KOG1960|consen  322 QETRTRVQIKGQGSAFIEPSTNRESD----------------EPIHLCIMSHDPNAIQRAKVLCEDLIASVHQQYKAWKS  385 (531)
T ss_pred             CCCCcceeccCccceeecCCCCCCCC----------------CCcccccccCChhhhhhhhhcccccCCcccccCccccc
Confidence            3343333333332   3333222110                1112222222222223210  00111  1455556667


Q ss_pred             CCCCCCCcccccCCCCCcCCChHHHHHHHHhcCCCCCccccc
Q 008326          388 QPVSTGGTSYSGYEGIYPQATPLQQVALALRQSSSPLTSLVA  429 (570)
Q Consensus       388 ~p~~~~g~~y~gy~~iypqatplqqva~~l~~~~s~~~~~v~  429 (570)
                      ||.+  -+.-+|-||-+|-+-|   |+++|+-+.-+-||..+
T Consensus       386 qp~~--~~~~~~~~~~~~p~~~---~~~~~~~~~q~~~qp~~  422 (531)
T KOG1960|consen  386 QPKD--RDQNQGNRAYNPPNRN---QAFSARDSRQEKTQPTN  422 (531)
T ss_pred             CCCc--ccccCCCCCCCCCCcc---ccccCCCCCCCCCCCCC
Confidence            8854  4556788899987776   68888887666665443

>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information
>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification] Back     alignment and domain information
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] Back     alignment and domain information
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification] Back     alignment and domain information
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification] Back     alignment and domain information
>cd00105 KH-I K homology RNA-binding domain, type I Back     alignment and domain information
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>smart00322 KH K homology RNA-binding domain Back     alignment and domain information
>PF00013 KH_1: KH domain syndrome, contains KH motifs Back     alignment and domain information
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like Back     alignment and domain information
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like Back     alignment and domain information
>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>PF13014 KH_3: KH domain Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional Back     alignment and domain information
>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification] Back     alignment and domain information
>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only] Back     alignment and domain information
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only] Back     alignment and domain information
>PF00013 KH_1: KH domain syndrome, contains KH motifs Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] Back     alignment and domain information
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query570
2yqr_A119 Solution Structure Of The Kh Domain In Kiaa0907 Pro 3e-14
>pdb|2YQR|A Chain A, Solution Structure Of The Kh Domain In Kiaa0907 Protein Length = 119 Back     alignment and structure 
Iteration: 1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 212 VFLGFD-ADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLH 270
           +F+G + A  + N+  ++ GP   Y+ HI  ETGA V LRG+GSG  E   G E  +P++
Sbjct: 16  LFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMY 75
Query: 271 LFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPP 316
           +++S   P+ L  AK+L ENLL T+ AE   SR  + ++  AVP P
Sbjct: 76  IYISHPKPEGLAAAKKLCENLLQTVHAE--YSRFVN-QINTAVPLP 118

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query570
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 3e-26
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 2e-14
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 5e-04
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
 Score =  102 bits (255), Expect = 3e-26
 Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 4/114 (3%)

Query: 204 GVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQG 262
           G+  +   +F+G + A  + N+  ++ GP   Y+ HI  ETGA V LRG+GSG  E   G
Sbjct: 8   GMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASG 67

Query: 263 EEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPP 316
            E  +P+++++S   P+ L  AK+L ENLL T+ AE         ++  AVP P
Sbjct: 68  REAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE---YSRFVNQINTAVPLP 118
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 131 Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 131 Back     alignment and structure
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Length = 140 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query570
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 99.96
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 99.93
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 99.91
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 99.35
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 99.27
1j4w_A174 FUSE binding protein; single-stranded DNA binding 99.1
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 99.05
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 99.05
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 98.88
1x4m_A94 FAR upstream element binding protein 1; KH domain, 98.7
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 98.65
1x4n_A92 FAR upstream element binding protein 1; KH domain, 98.64
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 98.61
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 98.57
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 98.56
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 98.55
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 98.55
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 98.54
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 98.53
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 98.51
1we8_A104 Tudor and KH domain containing protein; structural 98.51
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 98.47
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 98.47
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 98.47
2dgr_A83 Ring finger and KH domain-containing protein 1; st 98.44
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 98.43
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 98.38
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 98.33
1tua_A191 Hypothetical protein APE0754; structural genomics, 98.26
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 98.12
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 98.04
1j4w_A174 FUSE binding protein; single-stranded DNA binding 97.94
2ctj_A95 Vigilin; K homology type I domain, RNA-binding, ce 97.92
2cpq_A91 FragIle X mental retardation syndrome related prot 97.81
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 97.76
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 97.71
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 97.68
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 97.67
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 97.66
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 97.36
2ctf_A102 Vigilin; K homology type I domain, RNA-binding, ce 97.05
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 96.7
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 96.6
3n89_A376 Defective in GERM LINE development protein 3, ISO; 96.59
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 96.39
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 95.97
3n89_A376 Defective in GERM LINE development protein 3, ISO; 95.54
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 94.68
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 94.39
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 93.7
1x4m_A94 FAR upstream element binding protein 1; KH domain, 93.59
1we8_A104 Tudor and KH domain containing protein; structural 93.43
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 93.39
3cdi_A723 Polynucleotide phosphorylase; mRNA turnover, RNAse 93.11
3v69_A140 Protein filia; RNA-binding, embryogenesis, KH doma 93.07
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 92.8
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 92.71
2dgr_A83 Ring finger and KH domain-containing protein 1; st 92.66
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 92.54
1x4n_A92 FAR upstream element binding protein 1; KH domain, 92.51
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 92.41
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 91.77
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 91.67
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 91.12
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 91.01
1e3p_A757 Guanosine pentaphosphate synthetase; polyribonucle 90.98
1tua_A191 Hypothetical protein APE0754; structural genomics, 90.12
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 90.04
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 89.47
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 88.25
4fxw_B124 Splicing factor 1; UHM, protein binding, phosphory 86.11
2ctj_A95 Vigilin; K homology type I domain, RNA-binding, ce 80.03
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
Probab=99.96  E-value=1.4e-30  Score=232.34  Aligned_cols=104  Identities=37%  Similarity=0.666  Sum_probs=99.5

Q ss_pred             CCCcccceeEEEecCC-CCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q 008326          202 GNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS  280 (570)
Q Consensus       202 ~~G~k~~~eKI~Ipld-~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~  280 (570)
                      ..|++|+++|||||++ ++|+|||+|+||||+|+|+|+|++||||||.||||||+++|+.+++|++|||||+|++.+.++
T Consensus         6 ~~~~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~   85 (119)
T 2yqr_A            6 SGGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEG   85 (119)
T ss_dssp             CSCCSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHH
T ss_pred             CCCeeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHH
Confidence            3577999999999999 699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccc
Q 008326          281 LEEAKRLAENLLDTISAECGASRVS  305 (570)
Q Consensus       281 l~kAk~LiEnLL~tV~eE~~a~r~~  305 (570)
                      +++|++||++||.+++++|+.|+..
T Consensus        86 i~~A~~~Ie~Ll~~v~~~~~~~~~q  110 (119)
T 2yqr_A           86 LAAAKKLCENLLQTVHAEYSRFVNQ  110 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHh
Confidence            9999999999999999999999633
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus} Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A Back     alignment and structure
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 570
d1k1ga_122 d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo s 3e-15
d1k1ga_122 d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo s 3e-04
d2bl5a1134 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {Afric 2e-14
d2bl5a1134 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {Afric 9e-04
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: RNA splicing factor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 3e-15
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 212 VFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS------GNSEGLQGEEV 265
           V +  D    +N    + GP    + +I  E  A +++RG+GS      G  +G      
Sbjct: 7   VMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGE 66

Query: 266 HQPLHLFLSSNNPKSLEEAKRLAENLLD 293
            +PLH  +++N  +++++A     N+L 
Sbjct: 67  DEPLHALVTANTMENVKKAVEQIRNILK 94
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 134 Back     information, alignment and structure
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 134 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query570
d1k1ga_122 RNA splicing factor 1 {Human (Homo sapiens) [TaxId 99.95
d2bl5a1134 Quaking protein A (Xqua) {African clawed frog (Xen 99.94
d1j4wa174 Far upstream binding element, FBP {Human (Homo sap 98.75
d1x4ma181 Far upstream binding element, FBP {Mouse (Mus musc 98.59
d1x4na179 Far upstream binding element, FBP {Mouse (Mus musc 98.59
d1j4wa271 Far upstream binding element, FBP {Human (Homo sap 98.59
d1zzka175 HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} 98.58
d1we8a_104 Tudor and KH domain containing protein, Tdrkh {Mou 98.55
d1dtja_74 Neuro-oncological ventral antigen 2, nova-2, KH3 { 98.55
d2cpqa178 Fragile X mental retardation syndrome related prot 98.54
d2ctma181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.5
d2ctka191 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.43
d2ba0a384 Exosome complex RNA-binding protein 1, ECR1 {Archa 98.4
d1wvna170 Poly(RC)-binding protein 1 {Human (Homo sapiens) [ 98.34
d2ctea181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.34
d1tuaa2104 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 98.34
d2ctla184 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.26
d1viga_71 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.2
d2z0sa287 Exosome complex RNA-binding protein 1, ECR1 {Aerop 98.2
d2axya171 Poly(RC)-binding protein 2 {Human (Homo sapiens) [ 98.19
d2je6i369 Exosome complex RNA-binding protein 1, ECR1 {Sulfo 98.17
d1k1ga_122 RNA splicing factor 1 {Human (Homo sapiens) [TaxId 98.16
d2ctfa190 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.15
d1tuaa184 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 98.12
d2ctja182 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.02
d1e3ha454 Polynucleotide phosphorylase/guanosine pentaphosph 97.37
d2bl5a1134 Quaking protein A (Xqua) {African clawed frog (Xen 97.26
d1zzka175 HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} 95.99
d1x4na179 Far upstream binding element, FBP {Mouse (Mus musc 95.25
d1we8a_104 Tudor and KH domain containing protein, Tdrkh {Mou 95.19
d2ctla184 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 94.89
d2ctea181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 94.74
d2ctma181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 94.21
d1x4ma181 Far upstream binding element, FBP {Mouse (Mus musc 94.08
d1wvna170 Poly(RC)-binding protein 1 {Human (Homo sapiens) [ 93.75
d1j4wa174 Far upstream binding element, FBP {Human (Homo sap 93.48
d2ctka191 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 92.84
d1viga_71 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 92.43
d1dtja_74 Neuro-oncological ventral antigen 2, nova-2, KH3 { 92.17
d1j4wa271 Far upstream binding element, FBP {Human (Homo sap 91.69
d2axya171 Poly(RC)-binding protein 2 {Human (Homo sapiens) [ 91.43
d2cpqa178 Fragile X mental retardation syndrome related prot 89.9
d2ba0a384 Exosome complex RNA-binding protein 1, ECR1 {Archa 83.94
d2ctfa190 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 80.53
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: RNA splicing factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-28  Score=218.79  Aligned_cols=88  Identities=24%  Similarity=0.434  Sum_probs=81.3

Q ss_pred             cceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCC------CCCCCCCCCCCcEEEEEeCCHHH
Q 008326          207 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNS------EGLQGEEVHQPLHLFLSSNNPKS  280 (570)
Q Consensus       207 ~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~------E~~~g~EsdEPLHV~Isa~~~e~  280 (570)
                      .+++|||||++.||+|||+|+||||+|+|+|+||+||||||+||||||++.      +....++.+|||||||++++++.
T Consensus         2 k~~~Ki~iP~~~~P~fNfvG~IlGPrG~t~K~Le~eTgckI~IrGrGS~kd~~~~~~~~~~~~~~~epLHv~I~a~~~~~   81 (122)
T d1k1ga_           2 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN   81 (122)
T ss_dssp             CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred             ceeEEEecCCccCCCCCeeeeEeCCCCchHHHHHHHHCCEEEEEecCCcccccccccCCCCCCCCCCCceEEEecCChhh
Confidence            578999999999999999999999999999999999999999999999653      34456678999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 008326          281 LEEAKRLAENLLDT  294 (570)
Q Consensus       281 l~kAk~LiEnLL~t  294 (570)
                      +++|+++|++||..
T Consensus        82 ~~~A~~~i~~ll~~   95 (122)
T d1k1ga_          82 VKKAVEQIRNILKQ   95 (122)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999965
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure