Citrus Sinensis ID: 008334

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
Protein Sequence
MSLMMLFFYFVFLILLLLWLYYYYYYYYCMKATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT
Secondary Structure (PSIPRED)
ccEEEEEHHHHHHHHHHHHHHEEEEEEEEEHHHHHHHHHHHcHHHcccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEccccccEEEEEEEEEccccEEEEEEEEEEccccEEEEEEEEEccccEEEEEEEEEEEEEEEEEEEccccccccEEEEEEEEcccccEEEEEEEEccccccccccccHHHHHHHHHHHcccccccccEEEccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEcccccccccEEEEccccccEEEEEEEEEEEEccccEEEEEEEEccccccccEEEEEEEEccccccccEEEEEEEEEcccccccccEEEEEEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccEEEEEEEEEEEcccccccccccccEEEEEEccEEEEEEEEEEccccccEEccEEEEEEEEccccEEEEEEEEccccccccEEEEEEEccHHcccccccEEEEccccccEEEEEEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEcEEEEEEEEccccccEEEEEEEEEccccEEEEEEEEEEcccccEEEEEEEEEEccccEEEEEEEEEEEEEEEEEccccccccEEEEEEEEcccccEEEEEEEccccHcccccHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccEEEEEEEEEEEccccccccccccEEEEEEEEccccccEEccccccccccEEEEEEEEccEcccccEEEEEEEEccccccccccEEEEEEHHHccccccccEEEEccccccccccccccEEEEEEEEEEEcccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEEcccEEEEEEEEEEcccccccccEEEEEEccccccEEEEEEEEcccccccccEEEEEEHHHHcHcccccEEEEcccccccEEEEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MSLMMLFFYFVFLILLLLWLYYYYYYYYCMKATTIAAFARMTVedskkilpaefypswvvfSHRQKLTWLNHHLEKLWPYVNEAASELIKSsvepvleqyRPFILSslkfskftlgtvapqftgvsiiedggsgvtMELEMQWDANSSIILAIKTRLGValpvqvknigftGVFRLIfrplvdefpgfaaVSYSLREKKKLDFKLKVvggdistipglsdsIEATIHDAIedsitwpvrkivpilpgdyselelkpvgtLEVKLVQAkgltnkdligksdpyavlfvrplpektkksktinndlnpiwNEHFEFIVEDESTQHLVVRIyddegiqsseliGCAQVRlcelepgkvKDVWLKLVKDldvqrdtkyrgQVHLELLycpfgmenvftnpfapnfsmTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAenlpasdlmgkadpYVVLTMKksetrnktrvVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWdhdtfgkdymgrCILTLTRVILegeytdcfeldgtksgklklhlkwmpqpiyrdt
Flexible Loop (DISEMBL)
MSLMMLFFYFVFLILLLLWLYYYYYYYYCMKATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGdistipglsdsIEATIHDAiedsitwpvRKIVPILPGDYSELELKPVGTLEVKLVQAKgltnkdligksdpyAVLFVrplpektkksktinndlnPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCElepgkvkdVWLKLVKDldvqrdtkyrGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKAlksgangteaielekdasqkRREVIIRGVLSVTVILAenlpasdlmgkaDPYVVLTMkksetrnktrvvndclnpIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFEldgtksgklklhlkwmpqpiyrdt
Low Complexity Region (SEG)
MSLMMlffyfvflillllwlyyyyyyyyCMKATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGkvkdvwlklvkdldvQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT
Disordered region (IsUnstruct)
**LMMLFFYFVFLILLLLWLYYYYYYYYCMKATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP******KTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKV*****************************EVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMP*******
Disordered Region (DISOPRED)
MSLMMLFFYFVFLILLLLWLYYYYYYYYCMKATTIAAFARMTVEDS****PAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV***TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTS******************************KRREVIIRGVLSVTVILA*************PYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYR**
Disordered Region (DISEMBL)
MSLMMLFFYFVFLILLLLWLYYYYYYYYCMKATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT
Disordered Region (DISPRO)
MSLMMLFFYFVFLILLLLWLYYYYYYYYCMKATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM***************************************************IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIY***
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLMMLFFYFVFLILLLLWLYYYYYYYYCMKATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	569	2.2.26 [Sep-21-2011]
Q8L706	560	Synaptotagmin-5 OS=Arabid	yes	no	0.922	0.937	0.752	0.0
A0JJX5	569	Synaptotagmin-4 OS=Arabid	no	no	0.980	0.980	0.683	0.0
Q9SKR2	541	Synaptotagmin-1 OS=Arabid	no	no	0.892	0.939	0.307	8e-60
B6ETT4	537	Synaptotagmin-2 OS=Arabid	no	no	0.875	0.927	0.294	7e-57
Q7XA06	540	Synaptotagmin-3 OS=Arabid	no	no	0.811	0.855	0.290	1e-55
Q7ZWU7	876	Extended synaptotagmin-2-	N/A	no	0.820	0.533	0.253	7e-31
Q5DTI8	891	Extended synaptotagmin-3	yes	no	0.864	0.552	0.255	9e-31
Q5FWL4	872	Extended synaptotagmin-2-	N/A	no	0.785	0.512	0.255	1e-30
Q3TZZ7	845	Extended synaptotagmin-2	no	no	0.806	0.543	0.249	2e-30
A0FGR8	921	Extended synaptotagmin-2	yes	no	0.708	0.437	0.256	9e-30

>sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1

 Score =  853 bits (2204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/538 (75%), Positives = 469/538 (87%), Gaps = 13/538 (2%)

Query: 32  ATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKS 91
           A T+AAFARMTVEDS+K+LP EFYPSWVVFS RQKLTWLNHHL K+WPYV+EAASELIK+
Sbjct: 36  ANTVAAFARMTVEDSRKLLPPEFYPSWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKA 95

Query: 92  SVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIIL 151
           SVEPVLEQYRP I++SL FSK TLGTVAPQFTGVS+I+   +G+T+EL+MQWD N +I+L
Sbjct: 96  SVEPVLEQYRPAIVASLTFSKLTLGTVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVL 155

Query: 152 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 211
            +KT +GV+LP+QVKNIGFTGVFRLIFRPLV++FP F AVS SLREKKKLDF LKVVGGD
Sbjct: 156 GVKTLVGVSLPIQVKNIGFTGVFRLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGD 215

Query: 212 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLT 271
           IS IPGLS++IE TI DA+EDSITWPVRK++PI+PGDYS+LELKPVG LEVKLVQAK LT
Sbjct: 216 ISAIPGLSEAIEETIRDAVEDSITWPVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLT 275

Query: 272 NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 331
           NKDL+GKSDP+A +F+RPL EKTK+SKTINNDLNPIWNEHFEF+VED STQHLVVRIYDD
Sbjct: 276 NKDLVGKSDPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDD 335

Query: 332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMEN 391
           EG+Q+SELIGCAQ+RLCELEPGKVKDVWLKLVKDL++QRDTK RG+VHLELLY P+G  N
Sbjct: 336 EGVQASELIGCAQIRLCELEPGKVKDVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGN 395

Query: 392 VFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVI 451
              NPF  + SMTSLE+VL N            +  + E  +S+KR++VI+RGVLSVTVI
Sbjct: 396 GIVNPFVTS-SMTSLERVLKN------------DTTDEENASSRKRKDVIVRGVLSVTVI 442

Query: 452 LAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIA 511
            AE +P  DLMGKADPYVVL+MKKS  ++KTRVVND LNP+WNQTFDFVVEDGLHDML+ 
Sbjct: 443 SAEEIPIQDLMGKADPYVVLSMKKSGAKSKTRVVNDSLNPVWNQTFDFVVEDGLHDMLVL 502

Query: 512 EVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 569
           EVWDHDTFGKDY+GRCILTLTRVI+E EY D + LD +K+GKL+LHLKWM Q IYRD+
Sbjct: 503 EVWDHDTFGKDYIGRCILTLTRVIMEEEYKDWYPLDESKTGKLQLHLKWMAQSIYRDS 560

May be involved in membrane trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/575 (68%), Positives = 474/575 (82%), Gaps = 17/575 (2%)

Query: 5   MLFFYFVFL-ILLLLWLYYYYYYYYCMKAT-------TIAAFARMTVEDSKKILPAEFYP 56
           M F + +F+ I +   L   +  Y  +++T       TIAAFARMTV+DS+K+LP +FYP
Sbjct: 1   MGFLFGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYP 60

Query: 57  SWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLG 116
           SWVVFS RQKL WLN  LEK+WPYVNEAASELIKSSVEPVLEQY P +L+SLKFSKFTLG
Sbjct: 61  SWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLG 120

Query: 117 TVAPQFTGVSIIED--GGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF 174
           TVAPQFTGVSI+E   G +G+TMELEMQWD N  I+L +KT LGV+LP++VKNIGFTGVF
Sbjct: 121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVF 180

Query: 175 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSI 234
           RLIF+PLVDEFP F A+SYSLREKK LDF LKV+GG++++IPG+SD+IE TI DAIEDSI
Sbjct: 181 RLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSI 240

Query: 235 TWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT 294
           TWPVRKI+PILPGDYS+LELKPVG L+VK+VQAK L NKD+IGKSDPYA++F+RPLP++T
Sbjct: 241 TWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRT 300

Query: 295 KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK 354
           KK+KTI+N LNPIWNEHFEFIVED STQHL VR++DDEG+ SS+LIG AQV L EL PGK
Sbjct: 301 KKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGK 360

Query: 355 VKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGE 414
           VKD+WLKLVKDL++QRDTK RGQV LELLYCP G E    NPF P++S+T LEKV     
Sbjct: 361 VKDIWLKLVKDLEIQRDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYSLTILEKV----- 415

Query: 415 KALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMK 474
             LK  +  ++A +++K  + K+++VI+RGVLSVTV+ AE+LPA D MGKAD +VV+T+K
Sbjct: 416 --LKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFVVITLK 473

Query: 475 KSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRV 534
           KSET++KTRVV D LNP+WNQTFDFVVED LHD+L  EVWDHD FGKD +GR I+TLTRV
Sbjct: 474 KSETKSKTRVVPDSLNPVWNQTFDFVVEDALHDLLTLEVWDHDKFGKDKIGRVIMTLTRV 533

Query: 535 ILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 569
           +LEGE+ + FELDG KSGKL +HLKW P+   RD 
Sbjct: 534 MLEGEFQEWFELDGAKSGKLCVHLKWTPRLKLRDA 568

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2

 Score =  232 bits (591), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 173/563 (30%), Positives = 281/563 (49%), Gaps = 55/563 (9%)

Query: 11  VFLILLLLWLYYYYYYYYCMKATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWL 70
           + L L++ ++ + Y     +K   I + A    +   ++LP    P WV      ++ W+
Sbjct: 17  ISLGLVIGYVLFVYLLPNDVKDPEIRSIADQDPKAMLRMLPE--IPLWVKNPDFDRVDWI 74

Query: 71  NHHLEKLWPYVNEAASELIKSSVEPVLEQYRP-FILSSLKFSKFTLGTVAPQFTGVSIIE 129
           N  LE +WPY+++A  +  K+  +P++E+  P + + S++F   TLG++ P F G+ +  
Sbjct: 75  NRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFETLTLGSLPPTFQGMKVYL 134

Query: 130 DGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFA 189
                + ME  ++W AN +I++AIK   G+   VQV ++      R+  +PLV  FP FA
Sbjct: 135 TDEKELIMEPCLKWAANPNILVAIKA-FGLKATVQVVDLQVFAQPRITLKPLVPSFPCFA 193

Query: 190 AVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDY 249
            +  SL EK  +DF LK+ G D+ +IPGL   ++  I D + +   WP   +VPIL  D 
Sbjct: 194 NIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANMYLWPKTLVVPIL--DP 251

Query: 250 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 309
           ++   +PVG + VK+V+A GL  KDL+G +DP+  + +      +KK+   + +LNP WN
Sbjct: 252 AKAFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSEDKIPSKKTTVKHKNLNPEWN 311

Query: 310 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ 369
           E F+F V D  TQ L   +YD E + + E +G   + L E+ P + K   L+L K LD  
Sbjct: 312 EEFKFSVRDPQTQVLEFSVYDWEQVGNPEKMGMNVLALKEMVPDEHKAFTLELRKTLDGG 371

Query: 370 RD----TKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTE 425
            D     KYRG++ +ELLY PF  E +        F  T          +A++    GT 
Sbjct: 372 EDGQPPDKYRGKLEVELLYKPFTEEEM-----PKGFEET----------QAVQKAPEGTP 416

Query: 426 AIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGK--ADPYVVLTMKKSETRNKTR 483
           A                 G+L V V  AE     D+ GK   +PYV +  K  E   KT+
Sbjct: 417 AA---------------GGMLVVIVHSAE-----DVEGKHHTNPYVRIYFKGEE--RKTK 454

Query: 484 VVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDT-----FGKDYMGRCILTLTRVILE 537
            V    +P WN+ F F++E+  + + L  EV    +       K+ +G   + +  V+  
Sbjct: 455 HVKKNRDPRWNEEFTFMLEEPPVREKLHVEVLSTSSRIGLLHPKETLGYVDIPVVDVVNN 514

Query: 538 GEYTDCFELDGTKSGKLKLHLKW 560
                 F L  +K+GK+++ L+W
Sbjct: 515 KRMNQKFHLIDSKNGKIQIELEW 537

Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata.

Arabidopsis thaliana (taxid: 3702)

>sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1

 Score =  222 bits (565), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 162/551 (29%), Positives = 271/551 (49%), Gaps = 53/551 (9%)

Query: 21  YYYYYYYYC--MKATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLW 78
           YY + Y+    ++   I     +  E    + P    P WV      ++ WLN  +  +W
Sbjct: 25  YYLFIYFQSTDVEDPEIKPLVELDSETIATMFPE--IPMWVKNPDFDRIDWLNKLIGHMW 82

Query: 79  PYVNEAASELIKSSVEPVL-EQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTM 137
           PY+++A  ++ KS  +P++ EQ   + + S++F   TLG++ P F G+ +       + M
Sbjct: 83  PYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTLGSLPPSFQGMKVYATDDKEIIM 142

Query: 138 ELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLRE 197
           EL ++W  N +II+  K   G+   VQV ++      R+  +PLV  FP FA +  SL +
Sbjct: 143 ELSVKWAGNPNIIVVAKA-FGLKATVQVIDLQVYATPRITLKPLVPSFPCFANIFVSLMD 201

Query: 198 KKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPV 257
           K ++DF LK++G D+  IPGL   ++  I D + +   WP    V I+  D S+   KPV
Sbjct: 202 KPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYLWPKTLNVQIM--DPSKAMKKPV 259

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 317
           G L VK+++A  L  KDL+G SDPY  L +       KK+   +++LNP WNE F+ +V+
Sbjct: 260 GLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGKKTVVKHSNLNPEWNEEFDLVVK 319

Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQR--DTKYR 375
           +  +Q L + +YD E +   + IG   ++L +L P + K + L+L+K ++ +     K R
Sbjct: 320 EPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEPKLMTLELLKSMEPKEPVSEKSR 379

Query: 376 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQ 435
           GQ+ +E+ Y PF  +++  N   PN               A++    GT +         
Sbjct: 380 GQLVVEVEYKPFKDDDIPENIDDPN---------------AVEKAPEGTPS--------- 415

Query: 436 KRREVIIRGVLSVTVILAENLPASDLMGK--ADPYVVLTMKKSETRNKTRVVNDCLNPIW 493
                   G+L V V  AE     DL GK   +P V L  +  E   KT+ V     P W
Sbjct: 416 ------TGGLLVVIVHEAE-----DLEGKYHTNPSVRLLFRGEE--RKTKRVKKNREPRW 462

Query: 494 NQTFDFVV-EDGLHDMLIAEVWDHDT---FGKDYMGRCILTLTRVILEGEYTDCFELDGT 549
           ++ F F + E  ++D L  EV    +     K+ +G  ++ L  V+      D + L  +
Sbjct: 463 DEDFQFPLDEPPINDKLHVEVISSSSRLIHPKETLGYVVINLGDVVSNRRINDKYHLIDS 522

Query: 550 KSGKLKLHLKW 560
           K+G++++ L+W
Sbjct: 523 KNGRIQIELQW 533

May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1

 Score =  218 bits (555), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/517 (29%), Positives = 256/517 (49%), Gaps = 55/517 (10%)

Query: 58  WVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQY-RPFILSSLKFSKFTLG 116
           W+     +++ W N  +  +WPY+++A   +I+SSV+P+   Y   F + S++F   +LG
Sbjct: 62  WMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSLG 121

Query: 117 TVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRL 176
           T+ P   GV   E     +  E  ++W  N +I+L +K  L + + VQ+ ++ F  + R+
Sbjct: 122 TLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKV-LSLRIRVQLVDLQFFAIVRV 180

Query: 177 IFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITW 236
             +PL+  FP F  V  SL EK  +DF LKV+GGD+ +IPGL   ++ TI   +     W
Sbjct: 181 ALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYHW 240

Query: 237 PVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK 296
           P    +PIL    + ++ KPVG L V +++A+ L  KDL+G SDPY  L +       KK
Sbjct: 241 PQVLEIPILDSSTASVK-KPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKK 299

Query: 297 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 356
           +     +LNP WNEHF+ IV+D ++Q L + ++D + +   + +G   + L ++ PG+ K
Sbjct: 300 TTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGERK 359

Query: 357 DVWLKLVKDLDVQRDT---KYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNG 413
           +  L L+K+ +V  D+   K RG++ ++L Y PF                          
Sbjct: 360 EFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPF-------------------------R 394

Query: 414 EKALKSGANGTEAIELEKD--ASQKRREVIIRGVLSVTVILAENLPASDLMGK---ADPY 468
           E+++K      E    E D   SQ        G+LSV V       A D+ GK   ++PY
Sbjct: 395 EESIKRRKESREEKSSEDDDFLSQA-------GLLSVAV-----QSAKDVEGKKKHSNPY 442

Query: 469 VVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDT----FGKDY 523
            V+  +  + + K        +P WN+ F F +E+  + + +  EV    T      K+ 
Sbjct: 443 AVVLFRGEKKKTKMLKKTR--DPRWNEEFQFTLEEPPVKESIRVEVMSKGTGFHFRSKEE 500

Query: 524 MGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW 560
           +G   + L  V+  G     + L  +++G + + ++W
Sbjct: 501 LGHVDINLDDVVDNGRINQKYHLINSRNGIIHIEIRW 537

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7ZWU7|EST2B_XENLA Extended synaptotagmin-2-B OS=Xenopus laevis GN=esyt2-b PE=2 SV=1

 Score =  135 bits (341), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 134/528 (25%), Positives = 238/528 (45%), Gaps = 61/528 (11%)

Query: 56  PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTL 115
           P+WV F   ++  WLN  ++ +WPY+ +   +L + ++EP +       LS+  F+K  +
Sbjct: 116 PAWVHFPDIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAVRGANAH-LSTFSFTKIDM 174

Query: 116 GTVAPQFTGVSIIEDG--GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGV 173
           G+   +  GV +  +      + ++L++ +   + I L +K     A    VK+I   G 
Sbjct: 175 GSQPLRINGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRA---GVKSIQLHGT 231

Query: 174 FRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGG--DISTIPGLSDSIEATIHDAIE 231
            R+I  PL+ + P   A+S     K  L+     +    D+  + GLSD+I   I D I 
Sbjct: 232 MRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGLTNMLDMPGLNGLSDTI---ILDIIS 288

Query: 232 DSITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPY 282
           + +  P R  VP++  D    +L+   P G L +  ++A+ L  KD      + GKSDPY
Sbjct: 289 NYLVLPNRITVPLV-SDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPY 347

Query: 283 AVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGC 342
            V  VR L  +  +SK I  +LNP WNE +E +V +   Q L + ++ DE     + +G 
Sbjct: 348 GV--VR-LGNQVFQSKVIKENLNPKWNEVYEALVHEHPGQELEIELF-DEDTDKDDFLGS 403

Query: 343 AQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFS 402
             + L E+E  +V D W  L        D    G++HL+L +              P  +
Sbjct: 404 LLIDLVEVEKERVVDEWFTL--------DEATSGKLHLKLEW------------LTPKST 443

Query: 403 MTSLEKVLTNGEKALKSGANGTEA------IELEKDASQKRREVIIRGVLSVTVILAENL 456
             +L++VL + +       +G  A      ++  +       E+   G+    V  A+  
Sbjct: 444 TENLDQVLKSIKADKDQANDGLSAALLILYLDSARSLPNNPLEINHDGMKKAAVEKAKKA 503

Query: 457 PASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDH 516
               +    +PYV+ ++    T  +++V      P+W QTF F V +     L  EV D 
Sbjct: 504 -GKKIGSSPNPYVLFSV--GHTVQESKVKYKTAEPVWEQTFTFFVHNPKRQDLEVEVKDE 560

Query: 517 DTFGKDYMGRCILTLTRVILEGEYT--DCFELDGT---KSGKLKLHLK 559
           +   ++ MG   + L++++   + T    F L+ +    S K+K+ L+
Sbjct: 561 NH--QNSMGNIKIPLSQILASEDLTLNQRFHLNNSGPNSSLKMKIALR 606

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus laevis (taxid: 8355)

>sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2

 Score =  135 bits (340), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 140/548 (25%), Positives = 239/548 (43%), Gaps = 56/548 (10%)

Query: 12  FLILLLLWLYYYYYYYYCMKATTIA-AFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWL 70
            L+  LLW+++       +     A  F     E   + L  +  P+W+ F   +++ W 
Sbjct: 66  LLLGALLWMWWRRNRRGKLGRLEAAFEFLEHEREFISRELRGQHLPAWIHFPDVERVEWA 125

Query: 71  NHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED 130
           N  + ++WPY++      I+  +EP + + +   L +  F+K   G   P+  GV +  D
Sbjct: 126 NKIIIQIWPYLSMIMENKIREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPKVNGVKVHTD 184

Query: 131 --GGSGVTMELEMQWDANSSIILAI-KTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPG 187
                 VT++L++ +  +  I + + K R GV+       +   G  R+I  PL+ + P 
Sbjct: 185 KRNRRKVTLDLQICYIGDCEISVELQKIRGGVS------GVQLQGTLRVILEPLLVDKPF 238

Query: 188 FAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG 247
             AV+    +K  L      +  ++  +PG+++  ++ + D I   +  P R  VP+  G
Sbjct: 239 IGAVTVFFLQKPHLQINWTGLT-NLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKG 297

Query: 248 -DYSELELK-PVGTLEVKLVQAKGLTNKD----LIGKSDPYAVLFVRPLPEKTKKSKTIN 301
            D + L +  P G + V L++AK L  KD    L GKSDPYA + +     +  +S+TI 
Sbjct: 298 LDVTNLRVPLPCGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIG---LQHCRSRTIY 354

Query: 302 NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLK 361
            +LNP WNE FEF+V +   Q L V +Y DE     + +G  Q+ L ++   +V D W  
Sbjct: 355 KNLNPTWNEVFEFMVYEVPGQDLEVDLY-DEDTDKDDFLGSLQICLGDVMKNRVVDEWFA 413

Query: 362 LVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGA 421
           L        +    G++HL L +     +         N S  S   ++   E A     
Sbjct: 414 L--------NDTTSGRLHLRLEWLSLLTDQ---EALTENDSGLSTAILVVFLENACNLPR 462

Query: 422 NGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNK 481
           N  + +  E  A +  R V  +         A   P+S        YV LT+ K    +K
Sbjct: 463 NPFDYLNGEYRAKKLSRFVKNK---------ASRDPSS--------YVKLTVGKKTFTSK 505

Query: 482 TRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYT 541
           T       +P+W+Q F F V     + L  +V D +   +  +G     L R++   + T
Sbjct: 506 T--CPHSKDPVWSQVFSFFVHSVAAEQLCLKVLDDEL--ECALGVLEFPLCRILPCADLT 561

Query: 542 --DCFELD 547
              CF+LD
Sbjct: 562 LEQCFQLD 569

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|Q5FWL4|EST2A_XENLA Extended synaptotagmin-2-A OS=Xenopus laevis GN=esyt2-a PE=2 SV=1

 Score =  135 bits (339), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 140/548 (25%), Positives = 244/548 (44%), Gaps = 101/548 (18%)

Query: 56  PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTL 115
           P+WV F   ++  WLN  ++ +WPY+ +   +L + ++EP +       LS+  F+K  +
Sbjct: 112 PAWVHFPDIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAVRGANAH-LSTFNFTKIDM 170

Query: 116 GTVAPQFTGVSIIEDG--GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGV 173
           G+   +  GV +  +      + ++L++ +   + I L +K     A    VK+I   G 
Sbjct: 171 GSQPLRINGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRA---GVKSIQLHGT 227

Query: 174 FRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGG--DISTIPGLSDSIEATIHDAIE 231
            R+I  PL+ + P   A+S     K  L+     +    D+  + GLSD+I   I D I 
Sbjct: 228 MRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGLTNMLDMPGLNGLSDTI---ILDIIS 284

Query: 232 DSITWPVRKIVPILPGDYSELELK---PVGTLEVKLVQAKGLTNKD------LIGKSDPY 282
           + +  P R  VP++  D    +L+   P G L +  ++A+ L  KD      + GKSDPY
Sbjct: 285 NYLVLPNRITVPLV-SDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPY 343

Query: 283 AVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGC 342
            V  VR L  +  +SK I  +LNP WNE +E +V +   Q L + ++ DE     + +G 
Sbjct: 344 GV--VR-LGNQVFQSKVIKENLNPKWNEVYEALVHEHPGQELEIELF-DEDTDKDDFLGS 399

Query: 343 AQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFS 402
             + L E+E  +V D W  L        D    G++HL+L +              PN +
Sbjct: 400 LLIDLVEVEKERVVDEWFSL--------DEATSGKLHLKLEW------------LTPNST 439

Query: 403 MTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVIL----AENLPA 458
             +L++VL              ++I+ +KD +         G+ S  +IL    A +LP 
Sbjct: 440 TDNLDQVL--------------KSIKADKDQAND-------GLSSALLILYLDSARSLPN 478

Query: 459 SDL---------------------MGKA-DPYVVLTMKKSETRNKTRVVNDCLNPIWNQT 496
           + L                     +G + +PYV+ ++  +   +K +       P+W QT
Sbjct: 479 NPLEINHDGMKKAAVEKAKKAGKKIGSSPNPYVLFSVGHAVQESKVKY--KTAEPLWEQT 536

Query: 497 FDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYT--DCFELDGT---KS 551
           F F V +     L  EV D +   +  MG   + L++++   + T    F L+ +    S
Sbjct: 537 FTFFVHNPKRQDLEVEVKDENH--QSSMGNLKIPLSQILASEDLTMNQRFHLNNSGPNTS 594

Query: 552 GKLKLHLK 559
            K+K+ L+
Sbjct: 595 LKMKIALR 602

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus laevis (taxid: 8355)

>sp|Q3TZZ7|ESYT2_MOUSE Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 136/546 (24%), Positives = 239/546 (43%), Gaps = 87/546 (15%)

Query: 14  ILLLLWLYYYYYYYYCMKATTIAAFARMTVEDSKKI---LPAEFYPSWVVFSHRQKLTWL 70
           +LL L L  +      +KA+ +     +  ++ + +   + A   P+WV F   ++  WL
Sbjct: 63  VLLALGLLAWCRRSRGLKASRLCRALALLEDEEQAVRLGVRACDLPAWVHFPDTERAEWL 122

Query: 71  NHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED 130
           N  ++ +WP++ +   +L + ++EP +       LS+  F+K  +G    +  GV +  +
Sbjct: 123 NKTVKHMWPFICQFIEKLFRETIEPAVRGANAH-LSTFSFTKVDVGQQPLRVNGVKVYTE 181

Query: 131 G--GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGF 188
                 + ++L++ +  N  I L IK     A    VK+I   G  R+I  PL+ + P  
Sbjct: 182 NVDKRQIILDLQISFVGNCEIDLEIKRYFCRA---GVKSIQIHGTMRVILEPLIGDMPLV 238

Query: 189 AAVSYSLREKKKLDFKLKVVGG--DISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILP 246
            A+S     K  L+     +    DI  + GLSD+I   I D I + +  P R  VP++ 
Sbjct: 239 GALSIFFLRKPLLEINWTGLTNLLDIPGLNGLSDTI---ILDIISNYLVLPNRITVPLV- 294

Query: 247 GDYSELELK------PVGTLEVKLVQAKGLTNKD------LIGKSDPYAVLFVRPLPEKT 294
              SE+++       P G L +  ++A+ L  KD      + GKSDPY ++ V     + 
Sbjct: 295 ---SEVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGIIRVG---NQI 348

Query: 295 KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK 354
            +SK I  +L+P WNE +E +V +   Q L + ++ DE     + +G   + L E+E  +
Sbjct: 349 FQSKVIKENLSPKWNEVYEALVYEHPGQELEIELF-DEDPDKDDFLGSLMIDLIEVEKER 407

Query: 355 VKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGE 414
           + D W  L        D   +G++HL+L       E +   P A N     L+KVL +  
Sbjct: 408 LLDEWFTL--------DEVPKGKLHLKL-------EWLTLMPDAAN-----LDKVLAD-- 445

Query: 415 KALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVIL----AENLPASDLMGKADPYVV 470
                       I  +KD +         G+ S  +IL    A NLP+   +  ++P  +
Sbjct: 446 ------------IRADKDQASD-------GLSSALLILYLDSARNLPSGKKI-NSNPNPL 485

Query: 471 LTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILT 530
           + M       ++++      P+W + F F + +     L  EV       KD   +C L 
Sbjct: 486 VQMSVGHKAQESKIRYKTSEPVWEENFTFFIHNPRRQDLEVEV-------KDEQHQCSLG 538

Query: 531 LTRVIL 536
             R+ L
Sbjct: 539 SLRIPL 544

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|A0FGR8|ESYT2_HUMAN Extended synaptotagmin-2 OS=Homo sapiens GN=ESYT2 PE=1 SV=1

 Score =  132 bits (331), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 215/480 (44%), Gaps = 77/480 (16%)

Query: 56  PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTL 115
           P+WV F   ++  WLN  ++ +WP++ +   +L + ++EP +       LS+  F+K  +
Sbjct: 184 PAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVRGANTH-LSTFSFTKVDV 242

Query: 116 GTVAPQFTGVSIIEDG--GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGV 173
           G    +  GV +  +      + ++L++ +  N  I L IK     A    VK+I   G 
Sbjct: 243 GQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRA---GVKSIQIHGT 299

Query: 174 FRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGG--DISTIPGLSDSIEATIHDAIE 231
            R+I  PL+ + P   A+S     K  L+     +    D+  + GLSD+I   I D I 
Sbjct: 300 MRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLTNLLDVPGLNGLSDTI---ILDIIS 356

Query: 232 DSITWPVRKIVPILPGDYSELELK------PVGTLEVKLVQAKGLTNKD------LIGKS 279
           + +  P R  VP++    SE+++       P G L +  ++A+ L  KD      + GKS
Sbjct: 357 NYLVLPNRITVPLV----SEVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKS 412

Query: 280 DPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 339
           DPY ++ V     +  +S+ I  +L+P WNE +E +V +   Q L + ++ DE     + 
Sbjct: 413 DPYGIIRVG---NQIFQSRVIKENLSPKWNEVYEALVYEHPGQELEIELF-DEDPDKDDF 468

Query: 340 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAP 399
           +G   + L E+E  ++ D W  L        D   +G++HL L +              P
Sbjct: 469 LGSLMIDLIEVEKERLLDEWFTL--------DEVPKGKLHLRLEWL----------TLMP 510

Query: 400 NFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVIL----AEN 455
           N S  +L+KVLT+              I+ +KD +         G+ S  +IL    A N
Sbjct: 511 NAS--NLDKVLTD--------------IKADKDQAND-------GLSSALLILYLDSARN 547

Query: 456 LPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD 515
           LP+   +  ++P  V+ M       ++++      P+W + F F + +     L  EV D
Sbjct: 548 LPSGKKI-SSNPNPVVQMSVGHKAQESKIRYKTNEPVWEENFTFFIHNPKRQDLEVEVRD 606

May play a role as calcium-regulated intrinsic membrane protein.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	569
356562953	565	PREDICTED: extended synaptotagmin-1-like	0.931	0.938	0.806	0.0
449443041	567	PREDICTED: synaptotagmin-5-like [Cucumis	0.933	0.936	0.799	0.0
118484311	566	unknown [Populus trichocarpa]	0.933	0.938	0.801	0.0
224144112	566	plant synaptotagmin [Populus trichocarpa	0.933	0.938	0.799	0.0
357478297	566	Synaptotagmin-1 [Medicago truncatula] gi	0.933	0.938	0.791	0.0
356562955	557	PREDICTED: extended synaptotagmin-1-like	0.917	0.937	0.797	0.0
255579863	558	calcium lipid binding protein, putative	0.919	0.937	0.801	0.0
224120508	566	plant synaptotagmin [Populus trichocarpa	0.933	0.938	0.791	0.0
225446229	567	PREDICTED: extended synaptotagmin-1 [Vit	0.917	0.920	0.801	0.0
225430336	570	PREDICTED: extended synaptotagmin-1 isof	0.933	0.931	0.766	0.0

>gi|356562953|ref|XP_003549732.1| PREDICTED: extended synaptotagmin-1-like isoform 1 [Glycine max]

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/538 (80%), Positives = 483/538 (89%), Gaps = 8/538 (1%)

Query: 32  ATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKS 91
           ATT+AAFARMTVEDS+KILP +FYPSWVVFS  QKL+WLN HL K+WPYVNEAASELIK+
Sbjct: 36  ATTVAAFARMTVEDSRKILPPQFYPSWVVFSSSQKLSWLNSHLTKIWPYVNEAASELIKA 95

Query: 92  SVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIIL 151
           SVEP+LE+YRP +L++LKFSKFTLGTVAPQFTGVSIIEDGG GVTMELEMQWD N SIIL
Sbjct: 96  SVEPILEEYRPVVLAALKFSKFTLGTVAPQFTGVSIIEDGGDGVTMELEMQWDGNPSIIL 155

Query: 152 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 211
            IKT LGVALPVQVKNIGFTGVFRLIF+PLVDEFPGF AVSYSLR+KKKLDF LKV+GGD
Sbjct: 156 DIKTLLGVALPVQVKNIGFTGVFRLIFKPLVDEFPGFGAVSYSLRQKKKLDFTLKVIGGD 215

Query: 212 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLT 271
           IS IPGL D+IE  I DA+EDSITWPVRK+VPILPGDYS+LELKP G LEVKLVQAK LT
Sbjct: 216 ISAIPGLYDAIEGAIRDAVEDSITWPVRKVVPILPGDYSDLELKPEGILEVKLVQAKELT 275

Query: 272 NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 331
           NKD+IGKSDPYAV+++RPL E+ KKSKTINNDLNPIWNEHFEF+VED STQH+ V++YD 
Sbjct: 276 NKDIIGKSDPYAVVYIRPLRERMKKSKTINNDLNPIWNEHFEFVVEDVSTQHVTVKVYDS 335

Query: 332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMEN 391
           EG+QSSELIGCAQ++L EL+PGKVKDVWLKLVKDL++QRDTK RGQVHLELLYCPFGMEN
Sbjct: 336 EGLQSSELIGCAQLQLSELQPGKVKDVWLKLVKDLEIQRDTKNRGQVHLELLYCPFGMEN 395

Query: 392 VFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVI 451
            FTNPFAPN+SMTSLEKVL N        ANG E+   E   +QK++EVIIRGVLSVTVI
Sbjct: 396 SFTNPFAPNYSMTSLEKVLKN--------ANGVESNGNENAVTQKKKEVIIRGVLSVTVI 447

Query: 452 LAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIA 511
            AE+LPA+D MGK+DP+VVLT+KK+ET+NKTRVVND LNP+WNQTFDFVVEDGLHDMLI 
Sbjct: 448 SAEDLPATDFMGKSDPFVVLTLKKAETKNKTRVVNDSLNPVWNQTFDFVVEDGLHDMLIV 507

Query: 512 EVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 569
           EVWDHDTFGKDYMGRCILTLTRVILEGEY + F LDG KSG L LHLKWMPQPI+RD+
Sbjct: 508 EVWDHDTFGKDYMGRCILTLTRVILEGEYKERFVLDGAKSGFLNLHLKWMPQPIFRDS 565

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443041|ref|XP_004139289.1| PREDICTED: synaptotagmin-5-like [Cucumis sativus] gi|449517890|ref|XP_004165977.1| PREDICTED: synaptotagmin-5-like [Cucumis sativus]

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/539 (79%), Positives = 481/539 (89%), Gaps = 8/539 (1%)

Query: 32  ATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKS 91
           A TIAAFARMTVEDS+K+LP ++YPSWVVFS RQKLTWLN HL K+WPYVNEAAS+LIK+
Sbjct: 36  AATIAAFARMTVEDSRKLLPPQYYPSWVVFSQRQKLTWLNQHLTKIWPYVNEAASDLIKA 95

Query: 92  SVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGS-GVTMELEMQWDANSSII 150
           SVEPVLEQYRP ILSSLKFS+FTLGTVAPQ TG+SIIEDGG+ G+TME EMQWD N SII
Sbjct: 96  SVEPVLEQYRPIILSSLKFSRFTLGTVAPQLTGISIIEDGGTDGITMEFEMQWDGNQSII 155

Query: 151 LAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGG 210
           L IKTRLGVALPVQVKN+GFTGVFRLIF+PLVDEFP F AV +SLR+KKKLDF LKV+GG
Sbjct: 156 LDIKTRLGVALPVQVKNLGFTGVFRLIFKPLVDEFPCFGAVCFSLRQKKKLDFTLKVIGG 215

Query: 211 DISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGL 270
           DIS IPGL  ++E TI DA+EDSITWPVRK++PI+PGDYS+LELKPVG LEVKLVQAK L
Sbjct: 216 DISAIPGLYSALEGTIRDAVEDSITWPVRKVIPIIPGDYSDLELKPVGILEVKLVQAKEL 275

Query: 271 TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD 330
           TNKD+IGKSDPYA L++RPL ++ K SK INNDLNP+WNEHFEF+VEDESTQHLVV++YD
Sbjct: 276 TNKDVIGKSDPYAELYIRPLRDRMKTSKIINNDLNPVWNEHFEFVVEDESTQHLVVKVYD 335

Query: 331 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME 390
           DEG+Q+SELIGCAQ++L EL+PGKVKDVWLKLVKDL+V RD K RGQVHLELLYCPFGME
Sbjct: 336 DEGLQASELIGCAQIQLSELQPGKVKDVWLKLVKDLEVIRDNKNRGQVHLELLYCPFGME 395

Query: 391 NVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTV 450
           N FTNPFA +F MTSLE VL N        ANGTEA E E+  +QKR+EVIIRGVLSVTV
Sbjct: 396 NGFTNPFASDFRMTSLESVLKN-------RANGTEATESEQAVTQKRKEVIIRGVLSVTV 448

Query: 451 ILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLI 510
           I AE+LPA+DL+GK+DPYVVLTMKKS  +NKTRVVN+ LNPIWNQTFDFVVEDGLHDMLI
Sbjct: 449 ISAEDLPATDLVGKSDPYVVLTMKKSGMKNKTRVVNESLNPIWNQTFDFVVEDGLHDMLI 508

Query: 511 AEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 569
            EVWDHDTFGKDYMGRCILTLTRVILEGEY + FELDG KSG+L LHLKWMPQPIYRDT
Sbjct: 509 VEVWDHDTFGKDYMGRCILTLTRVILEGEYKESFELDGAKSGRLNLHLKWMPQPIYRDT 567

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484311|gb|ABK94033.1| unknown [Populus trichocarpa]

 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/538 (80%), Positives = 478/538 (88%), Gaps = 7/538 (1%)

Query: 32  ATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKS 91
           ATTIAAFARMTV+DS+KILPAEFYPSWVVFS RQKL WLN HL K+WPYV++AAS LIK+
Sbjct: 36  ATTIAAFARMTVDDSRKILPAEFYPSWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKT 95

Query: 92  SVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIIL 151
           S+EPVLEQYRP ILSSLKFSKFTLGTVAPQFTGVSIIEDGGSG+TMELEM WD N SIIL
Sbjct: 96  SLEPVLEQYRPVILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIIL 155

Query: 152 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 211
            IKTR GV+LPVQVK+IGFTGVFRLIF+PLV EFP F A+ YSLR+KKK+DF LKV+GGD
Sbjct: 156 GIKTRFGVSLPVQVKDIGFTGVFRLIFKPLVPEFPCFGAICYSLRQKKKMDFTLKVIGGD 215

Query: 212 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLT 271
           IS IPGL D+I+ TI +A+EDSITWPVRK+VPILPGDYS+LELKPVG LEVKLVQAK LT
Sbjct: 216 ISAIPGLDDAIQETIRNAVEDSITWPVRKVVPILPGDYSDLELKPVGILEVKLVQAKNLT 275

Query: 272 NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 331
           NKDLIGKSDP+A L++RPLP+KTK SK INNDLNPIWNEHFEF+VED STQHLVV++YDD
Sbjct: 276 NKDLIGKSDPFAKLYIRPLPDKTKTSKIINNDLNPIWNEHFEFVVEDASTQHLVVKVYDD 335

Query: 332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMEN 391
           EG+Q+SEL+GCAQV+L ELEPGKVKDVWLKLVKDL+VQRD K RGQVHLELLYCPFG+EN
Sbjct: 336 EGLQASELLGCAQVKLSELEPGKVKDVWLKLVKDLEVQRDNKNRGQVHLELLYCPFGVEN 395

Query: 392 VFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVI 451
              NPF+ +FSMTSLEKV       LKSG NGT  I    + +QKRREVIIRGVL+VTVI
Sbjct: 396 GLVNPFSSDFSMTSLEKV-------LKSGENGTGVIGNGNEVTQKRREVIIRGVLAVTVI 448

Query: 452 LAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIA 511
            AE+LP  DLMGKADP+V LTMKKSE RNKTRVVN+CLNP+WNQTFDFVVEDGLHDMLI 
Sbjct: 449 SAEDLPMVDLMGKADPFVTLTMKKSEMRNKTRVVNNCLNPVWNQTFDFVVEDGLHDMLII 508

Query: 512 EVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 569
           EVWDHDTFGKDYMGRCILTLTRVILEGEY +CF+LD  KSG+L LHLKW PQ IYRD+
Sbjct: 509 EVWDHDTFGKDYMGRCILTLTRVILEGEYKECFQLDEAKSGRLNLHLKWTPQHIYRDS 566

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144112|ref|XP_002325190.1| plant synaptotagmin [Populus trichocarpa] gi|222866624|gb|EEF03755.1| plant synaptotagmin [Populus trichocarpa]

 Score =  902 bits (2332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/538 (79%), Positives = 478/538 (88%), Gaps = 7/538 (1%)

Query: 32  ATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKS 91
           ATTIAAFARMTV+DS+KILPAEFYPSWVVFS RQKL WLN HL K+WPYV++AAS LIK+
Sbjct: 36  ATTIAAFARMTVDDSRKILPAEFYPSWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKA 95

Query: 92  SVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIIL 151
           S+EPVLEQYRP ILSSLKFSKFTLGTVAPQFTGVSIIEDGGSG+TMELEM WD N SIIL
Sbjct: 96  SLEPVLEQYRPVILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIIL 155

Query: 152 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 211
            IKTR GV+LPVQVK+IGFTGVF+LIF+PLV EFP F A+ YSLR+KKK+DF LKV+GGD
Sbjct: 156 GIKTRFGVSLPVQVKDIGFTGVFKLIFKPLVPEFPCFGAICYSLRQKKKMDFTLKVIGGD 215

Query: 212 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLT 271
           IS IPGL D+I+ TI +A+EDSITWPVRK+VPILPGDYS+LELKPVG LEVKLVQAK LT
Sbjct: 216 ISAIPGLDDAIQETIRNAVEDSITWPVRKVVPILPGDYSDLELKPVGILEVKLVQAKDLT 275

Query: 272 NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 331
           NKDLIGKSDP+A L++RPLP+KTK SK INNDLNPIWNEHFEF+VED STQHLVV++YDD
Sbjct: 276 NKDLIGKSDPFAKLYIRPLPDKTKTSKIINNDLNPIWNEHFEFVVEDASTQHLVVKVYDD 335

Query: 332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMEN 391
           EG+Q+SEL+GCAQV+L ELEPGKVKDVWLKLVKDL+VQRD K RGQVHLELLYCPFG+EN
Sbjct: 336 EGLQASELLGCAQVKLSELEPGKVKDVWLKLVKDLEVQRDNKNRGQVHLELLYCPFGVEN 395

Query: 392 VFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVI 451
              NPF+ +FSMTSLEKV       LKSG NGT  I    + +QKRREVIIRGVL+VTVI
Sbjct: 396 GLVNPFSSDFSMTSLEKV-------LKSGENGTGVIGNGNEVAQKRREVIIRGVLAVTVI 448

Query: 452 LAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIA 511
            AE+LP  DLMGKADP+V LTMKKSE RNKTRVVN+CLNP+WNQTFDFVVEDGLHDMLI 
Sbjct: 449 SAEDLPMVDLMGKADPFVTLTMKKSEMRNKTRVVNNCLNPVWNQTFDFVVEDGLHDMLII 508

Query: 512 EVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 569
           EVWDHDTFGKDYMGRCILTLTRVILEGEY +CF+LD  KSG+L LHLKW PQ IYRD+
Sbjct: 509 EVWDHDTFGKDYMGRCILTLTRVILEGEYKECFQLDEAKSGRLNLHLKWTPQHIYRDS 566

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478297|ref|XP_003609434.1| Synaptotagmin-1 [Medicago truncatula] gi|355510489|gb|AES91631.1| Synaptotagmin-1 [Medicago truncatula]

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/538 (79%), Positives = 481/538 (89%), Gaps = 7/538 (1%)

Query: 32  ATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKS 91
           ATTIAAFARMTVEDS+K+LP++FYPSWVVFS+RQKLTWLN HL K+WPYVNEAASELIK+
Sbjct: 36  ATTIAAFARMTVEDSRKLLPSQFYPSWVVFSNRQKLTWLNSHLTKIWPYVNEAASELIKT 95

Query: 92  SVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIIL 151
           S EP+LE+YRP ILS+LKFSKFTLGTVAPQFTGVSIIEDGG GVTMELE+QWD N SIIL
Sbjct: 96  SAEPILEEYRPMILSALKFSKFTLGTVAPQFTGVSIIEDGGDGVTMELEVQWDGNPSIIL 155

Query: 152 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 211
            IKT +G+ALPVQVKN+GFTGVFRLIF+PLV+EFPGF AV YSLR+KKKLDF LKV+GGD
Sbjct: 156 DIKTLVGLALPVQVKNVGFTGVFRLIFKPLVNEFPGFGAVCYSLRQKKKLDFTLKVIGGD 215

Query: 212 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLT 271
           ISTIPGL D+IE  I DA+EDSITWPVRKIVPILPGDYS+LELKPVG LEVKLVQAK LT
Sbjct: 216 ISTIPGLYDAIEGAIRDAVEDSITWPVRKIVPILPGDYSDLELKPVGILEVKLVQAKELT 275

Query: 272 NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 331
           NKD+IGKSDPYAVL++RPL  +TKKSKTINNDLNPIWNEHFEFIVED STQHL V++YDD
Sbjct: 276 NKDIIGKSDPYAVLYIRPLRNRTKKSKTINNDLNPIWNEHFEFIVEDASTQHLFVKVYDD 335

Query: 332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMEN 391
           EG+QSSELIGC  ++L ELEPGK+KDVWLKLVKDL++QRD K RGQVHLELLYCP+G EN
Sbjct: 336 EGLQSSELIGCTDIKLSELEPGKIKDVWLKLVKDLEIQRDNKNRGQVHLELLYCPYGTEN 395

Query: 392 VFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVI 451
            FTNPFA N+SMTSLEKV       LK  +NG ++   E +A+Q+++EVIIRGVLSVTVI
Sbjct: 396 SFTNPFARNYSMTSLEKV-------LKGSSNGIDSNGNESEAAQRKKEVIIRGVLSVTVI 448

Query: 452 LAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIA 511
            AE+LPA D MGK+DP+VVLT+KK+ET+NKTRVVN+ LNP+WNQTFDFVVEDGLHDML+ 
Sbjct: 449 SAEDLPAVDFMGKSDPFVVLTLKKAETKNKTRVVNNSLNPVWNQTFDFVVEDGLHDMLLV 508

Query: 512 EVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 569
           EV+DHDTFGKDYMGR ILTLTR ILEGEY + FELDG KSG L LHLKWMPQ IYRD+
Sbjct: 509 EVYDHDTFGKDYMGRVILTLTRAILEGEYKERFELDGAKSGFLNLHLKWMPQSIYRDS 566

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562955|ref|XP_003549733.1| PREDICTED: extended synaptotagmin-1-like isoform 2 [Glycine max]

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/538 (79%), Positives = 477/538 (88%), Gaps = 16/538 (2%)

Query: 32  ATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKS 91
           ATT+AAFARMTVEDS+KILP +FYPSW        LTWLN HL K+WPYVNEAASELIK+
Sbjct: 36  ATTVAAFARMTVEDSRKILPPQFYPSW--------LTWLNSHLTKIWPYVNEAASELIKA 87

Query: 92  SVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIIL 151
           SVEP+LE+YRP +L++LKFSKFTLGTVAPQFTGVSIIEDGG GVTMELEMQWD N SIIL
Sbjct: 88  SVEPILEEYRPVVLAALKFSKFTLGTVAPQFTGVSIIEDGGDGVTMELEMQWDGNPSIIL 147

Query: 152 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 211
            IKT LGVALPVQVKNIGFTGVFRLIF+PLVDEFPGF AVSYSLR+KKKLDF LKV+GGD
Sbjct: 148 DIKTLLGVALPVQVKNIGFTGVFRLIFKPLVDEFPGFGAVSYSLRQKKKLDFTLKVIGGD 207

Query: 212 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLT 271
           IS IPGL D+IE  I DA+EDSITWPVRK+VPILPGDYS+LELKP G LEVKLVQAK LT
Sbjct: 208 ISAIPGLYDAIEGAIRDAVEDSITWPVRKVVPILPGDYSDLELKPEGILEVKLVQAKELT 267

Query: 272 NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 331
           NKD+IGKSDPYAV+++RPL E+ KKSKTINNDLNPIWNEHFEF+VED STQH+ V++YD 
Sbjct: 268 NKDIIGKSDPYAVVYIRPLRERMKKSKTINNDLNPIWNEHFEFVVEDVSTQHVTVKVYDS 327

Query: 332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMEN 391
           EG+QSSELIGCAQ++L EL+PGKVKDVWLKLVKDL++QRDTK RGQVHLELLYCPFGMEN
Sbjct: 328 EGLQSSELIGCAQLQLSELQPGKVKDVWLKLVKDLEIQRDTKNRGQVHLELLYCPFGMEN 387

Query: 392 VFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVI 451
            FTNPFAPN+SMTSLEKVL N        ANG E+   E   +QK++EVIIRGVLSVTVI
Sbjct: 388 SFTNPFAPNYSMTSLEKVLKN--------ANGVESNGNENAVTQKKKEVIIRGVLSVTVI 439

Query: 452 LAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIA 511
            AE+LPA+D MGK+DP+VVLT+KK+ET+NKTRVVND LNP+WNQTFDFVVEDGLHDMLI 
Sbjct: 440 SAEDLPATDFMGKSDPFVVLTLKKAETKNKTRVVNDSLNPVWNQTFDFVVEDGLHDMLIV 499

Query: 512 EVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 569
           EVWDHDTFGKDYMGRCILTLTRVILEGEY + F LDG KSG L LHLKWMPQPI+RD+
Sbjct: 500 EVWDHDTFGKDYMGRCILTLTRVILEGEYKERFVLDGAKSGFLNLHLKWMPQPIFRDS 557

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579863|ref|XP_002530768.1| calcium lipid binding protein, putative [Ricinus communis] gi|223529684|gb|EEF31628.1| calcium lipid binding protein, putative [Ricinus communis]

 Score =  894 bits (2311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/538 (80%), Positives = 475/538 (88%), Gaps = 15/538 (2%)

Query: 32  ATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKS 91
           A T+AAFARMTVEDS+KILP+EFYPSW        LTWLN HL K+WPYVNEAASELIK+
Sbjct: 36  ARTVAAFARMTVEDSRKILPSEFYPSW--------LTWLNLHLTKIWPYVNEAASELIKA 87

Query: 92  SVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIIL 151
           SVEPVLEQYRP ILSSLKFSK TLGTVAPQFTGVSIIEDGGSG+TMELEM WD N SI+L
Sbjct: 88  SVEPVLEQYRPIILSSLKFSKLTLGTVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIVL 147

Query: 152 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 211
            IKTRLGV+LPVQVKNIGFTGVFRLIF+PLV+EFP F AV +SLR+KKKLDF LKV+GGD
Sbjct: 148 DIKTRLGVSLPVQVKNIGFTGVFRLIFKPLVNEFPCFGAVCFSLRQKKKLDFTLKVIGGD 207

Query: 212 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLT 271
           ISTIPG+ D+IE TI DAIEDSITWPVRK++PILPGDYS+LELKPVG LEVKLVQAK LT
Sbjct: 208 ISTIPGIYDAIEGTIRDAIEDSITWPVRKVIPILPGDYSDLELKPVGMLEVKLVQAKELT 267

Query: 272 NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 331
           NKD+IGKSDPYA L++RP+ ++ K SKTINNDLNPIWNEHFEFIVED STQHLVV+I+DD
Sbjct: 268 NKDIIGKSDPYAELYIRPIRDRIKTSKTINNDLNPIWNEHFEFIVEDASTQHLVVKIFDD 327

Query: 332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMEN 391
           EG+QSSELIGCAQV+LCEL+PGKVKDVWLKLVKDL+VQRD + RGQVHLELLYCPFGMEN
Sbjct: 328 EGLQSSELIGCAQVQLCELQPGKVKDVWLKLVKDLEVQRDNRNRGQVHLELLYCPFGMEN 387

Query: 392 VFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVI 451
            F NPFAP FSMTSLEKV       LK G +G E  E  +  +Q+RR+VI+RGVLSVTVI
Sbjct: 388 GFKNPFAPTFSMTSLEKV-------LKGGVDGMEITENGQAGTQRRRDVIVRGVLSVTVI 440

Query: 452 LAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIA 511
            AE+LP  DLMGKADPYVVLTMKKSETRNKTRVVND LNP+WNQTFDFVVEDGLHDMLI 
Sbjct: 441 SAEDLPVVDLMGKADPYVVLTMKKSETRNKTRVVNDSLNPVWNQTFDFVVEDGLHDMLIL 500

Query: 512 EVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 569
           EVWDHDTFGKDYMGRCI+TLTRVILEGEY D F +DG KSG L ++LKWMPQPIYRD+
Sbjct: 501 EVWDHDTFGKDYMGRCIMTLTRVILEGEYKDKFPIDGAKSGTLYVNLKWMPQPIYRDS 558

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120508|ref|XP_002331065.1| plant synaptotagmin [Populus trichocarpa] gi|222872995|gb|EEF10126.1| plant synaptotagmin [Populus trichocarpa]

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/538 (79%), Positives = 472/538 (87%), Gaps = 7/538 (1%)

Query: 32  ATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKS 91
           A  IAAFARMTVEDS+KILPAE+YPSWVVFS RQKL WLN HL K+WPYV++AAS LIK 
Sbjct: 36  AIAIAAFARMTVEDSRKILPAEYYPSWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKD 95

Query: 92  SVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIIL 151
           SVEPVLEQYRP ILSSLKFSKFTLGTVAPQFTGVSIIEDGGSG+TMELEM WD N SIIL
Sbjct: 96  SVEPVLEQYRPIILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIIL 155

Query: 152 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 211
            IKTRLGV+LPVQVK+IGFTGVFRLIF+PLV EFP F AV  SLR+KKK+DFKLKVVGGD
Sbjct: 156 DIKTRLGVSLPVQVKDIGFTGVFRLIFKPLVAEFPCFGAVCCSLRQKKKMDFKLKVVGGD 215

Query: 212 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLT 271
           IS IPGL D+I+ TI +A+EDSITWPVRK+VPILPGDYS+LELKPVG LEVKLVQAK LT
Sbjct: 216 ISAIPGLDDAIQETIQNAVEDSITWPVRKVVPILPGDYSDLELKPVGILEVKLVQAKDLT 275

Query: 272 NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 331
           NKDLIGKSDP+A L++RPLP+KTK +K INNDLNPIWNEHFEF+VED +TQHLVV+IYDD
Sbjct: 276 NKDLIGKSDPFAKLYIRPLPDKTKTTKIINNDLNPIWNEHFEFVVEDATTQHLVVKIYDD 335

Query: 332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMEN 391
           EGIQ++EL+GCAQV+L ELEPGKVKD+WLKLVKDL+VQRD K RGQVHLELLY PFGMEN
Sbjct: 336 EGIQAAELLGCAQVKLNELEPGKVKDLWLKLVKDLEVQRDNKNRGQVHLELLYRPFGMEN 395

Query: 392 VFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVI 451
              N FA +FSMTSLEKVL NG  +++   N  E        ++KRREVI+RGVLS+TVI
Sbjct: 396 GLGNSFASSFSMTSLEKVLKNGANSMEITGNVNE-------VTKKRREVIVRGVLSITVI 448

Query: 452 LAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIA 511
            AE+LP  DLMGKADP+V LTMKKSE RNKTRVVN+ LNP+WNQTFDFVVEDGLHDMLI 
Sbjct: 449 SAEDLPVVDLMGKADPFVTLTMKKSEMRNKTRVVNNNLNPVWNQTFDFVVEDGLHDMLIV 508

Query: 512 EVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 569
           EVWDHDTFGKDYMGRCILTLTRVILEGEY DCF+LD  KSG+L LHLKW PQ IYRD+
Sbjct: 509 EVWDHDTFGKDYMGRCILTLTRVILEGEYKDCFQLDEAKSGRLNLHLKWSPQHIYRDS 566

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446229|ref|XP_002265034.1| PREDICTED: extended synaptotagmin-1 [Vitis vinifera] gi|296084522|emb|CBI25543.3| unnamed protein product [Vitis vinifera]

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/529 (80%), Positives = 469/529 (88%), Gaps = 7/529 (1%)

Query: 40  RMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQ 99
           RMTVEDS+KILP++FYPSWVVFS RQKLTWLNHHL K+WPYVNEAASELI+++VEP+LEQ
Sbjct: 44  RMTVEDSRKILPSKFYPSWVVFSQRQKLTWLNHHLTKIWPYVNEAASELIRTNVEPILEQ 103

Query: 100 YRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGV 159
           YRP ILSSLKFS+FTLGTV+PQFTGVSIIEDG   +T+ELE+QWD N SIIL I TRLGV
Sbjct: 104 YRPMILSSLKFSRFTLGTVSPQFTGVSIIEDGADCITLELELQWDGNPSIILDINTRLGV 163

Query: 160 ALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLS 219
           ALPVQVKNIGFTGVFRL+F+PLVDEFP F AV +SLR+KKKLD  LKVVGGDIS IPG+S
Sbjct: 164 ALPVQVKNIGFTGVFRLMFKPLVDEFPCFGAVCFSLRQKKKLDLTLKVVGGDISAIPGIS 223

Query: 220 DSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKS 279
           D+I+ TI +AIEDSI WPVRK+VPILPGDYS+LELKPVGTLEVKLVQAK LTNKD+IGKS
Sbjct: 224 DAIKDTIDNAIEDSIMWPVRKVVPILPGDYSDLELKPVGTLEVKLVQAKELTNKDIIGKS 283

Query: 280 DPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 339
           DP+AVL+VRPLP + K SKTINN LNP+WNEHFEFIVED STQHLVV+IYD+EG+Q+SEL
Sbjct: 284 DPFAVLYVRPLPNRMKTSKTINNQLNPVWNEHFEFIVEDASTQHLVVKIYDNEGLQASEL 343

Query: 340 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAP 399
           IGCAQV+L ELEPGKVKD W KLVKDL+VQRDTK RGQVHLELLY PFGMEN FTNPFAP
Sbjct: 344 IGCAQVQLRELEPGKVKDAWWKLVKDLEVQRDTKNRGQVHLELLYVPFGMENGFTNPFAP 403

Query: 400 NFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPAS 459
            FSMTSLEKV       LK+G +GTE  E      QK+REVI+RGVLS+TVI AE+LP  
Sbjct: 404 KFSMTSLEKV-------LKNGVDGTEVAENGNAVMQKKREVIVRGVLSITVISAEDLPVV 456

Query: 460 DLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF 519
           DLMGKADPYVVL +KKSE RNKTRVVND LNP+WNQTFDFVVEDGLHDMLI EVWDHDTF
Sbjct: 457 DLMGKADPYVVLILKKSEIRNKTRVVNDSLNPVWNQTFDFVVEDGLHDMLILEVWDHDTF 516

Query: 520 GKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRD 568
           GKDYMGRCILTLTRVILEGEY + F+LD  KSG+L LHLKWMPQPIYRD
Sbjct: 517 GKDYMGRCILTLTRVILEGEYKETFQLDEAKSGRLNLHLKWMPQPIYRD 565

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430336|ref|XP_002285251.1| PREDICTED: extended synaptotagmin-1 isoform 1 [Vitis vinifera] gi|296082062|emb|CBI21067.3| unnamed protein product [Vitis vinifera]

 Score =  865 bits (2235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/548 (76%), Positives = 475/548 (86%), Gaps = 17/548 (3%)

Query: 29  CMKATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKL-------TWLNHHLEKLWPYV 81
           C  ATT+AAFARMTV+DS+KILP +FYPSWVVFS +QKL       TWLN HL K+WPYV
Sbjct: 33  CDLATTVAAFARMTVQDSRKILPPQFYPSWVVFSQQQKLSYMNGCLTWLNSHLRKIWPYV 92

Query: 82  NEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEM 141
           +EAASELI+S+VEP+LEQYRP ILS+LKFSK TLGTVAPQFTGVSI+E     V+MELEM
Sbjct: 93  DEAASELIRSNVEPILEQYRPVILSALKFSKLTLGTVAPQFTGVSILEGEAGEVSMELEM 152

Query: 142 QWDANSSIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKL 201
           QWD N +I+L IKTR+GV LPVQVKNIGFTGVFRLIF+P+V+EFP F AV YSLREKK L
Sbjct: 153 QWDGNPNIVLDIKTRVGVGLPVQVKNIGFTGVFRLIFKPMVEEFPCFGAVCYSLREKKNL 212

Query: 202 DFKLKVVGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLE 261
           DFKLKVVGGDI+ +PG+SD+IE TI DAIEDSITWPVRKIVPI+PGDYS+LELKPVGTLE
Sbjct: 213 DFKLKVVGGDITALPGISDAIEETILDAIEDSITWPVRKIVPIIPGDYSDLELKPVGTLE 272

Query: 262 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 321
           VKLVQA+ LTNKDLIGKSDPYAVLFVRP+ ++ K SKTINN+LNPIWNEHFEFIVED ST
Sbjct: 273 VKLVQARDLTNKDLIGKSDPYAVLFVRPIRDRMKTSKTINNELNPIWNEHFEFIVEDAST 332

Query: 322 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLE 381
           QHL VRI+DDEG+Q+SELIGCAQVRL +LEPGKVKDVWLKLVKDLDVQRD KYRG+V LE
Sbjct: 333 QHLTVRIFDDEGVQASELIGCAQVRLKDLEPGKVKDVWLKLVKDLDVQRDKKYRGEVRLE 392

Query: 382 LLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVI 441
           LLYCPFGME+VFTNPF PN  +TSLEKVL          A+GTEA +++K  S K+R++I
Sbjct: 393 LLYCPFGMESVFTNPFRPNL-LTSLEKVLK---------ADGTEADDIKKSHSLKKRDII 442

Query: 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV 501
           +RGVLSVTVI AENLP  DL+GKADPYV LTMKKS T+++TRVVN+ LNPIWNQTFDFVV
Sbjct: 443 VRGVLSVTVISAENLPVVDLIGKADPYVELTMKKSNTKHRTRVVNNSLNPIWNQTFDFVV 502

Query: 502 EDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWM 561
           EDGLHDMLI +VWDHDTFGKD +GRCI TLTRVILEGE+ D F L+G KSG L LHLKW 
Sbjct: 503 EDGLHDMLILDVWDHDTFGKDKIGRCIFTLTRVILEGEFRDNFPLEGAKSGSLNLHLKWS 562

Query: 562 PQPIYRDT 569
           PQPI+RDT
Sbjct: 563 PQPIFRDT 570

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	569
TAIR|locus:2201036	560	NTMC2T2.1 "AT1G05500" [Arabido	0.922	0.937	0.728	6.8e-214
TAIR|locus:2184931	569	SYTD "AT5G11100" [Arabidopsis	0.931	0.931	0.695	9.1e-203
TAIR|locus:2100992	510	NTMC2T4 [Arabidopsis thaliana	0.622	0.694	0.401	4.4e-68
TAIR|locus:2146688	540	SYTC "AT5G04220" [Arabidopsis	0.722	0.761	0.3	1.3e-59
TAIR|locus:2198581	537	SYTB "AT1G20080" [Arabidopsis	0.601	0.636	0.324	6.1e-56
UNIPROTKB|Q9BSJ8	1104	ESYT1 "Extended synaptotagmin-	0.502	0.259	0.290	2.5e-37
WB|WBGene00020443	713	esyt-2 [Caenorhabditis elegans	0.511	0.408	0.290	1.6e-34
FB|FBgn0039208	849	Esyt2 [Drosophila melanogaster	0.541	0.362	0.277	7.6e-30
RGD|3053	1088	Esyt1 "extended synaptotagmin-	0.502	0.262	0.293	9.4e-30
MGI|MGI:1098699	891	Esyt3 "extended synaptotagmin-	0.502	0.320	0.289	1.2e-29

TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)]

 Score = 2067 (732.7 bits), Expect = 6.8e-214, P = 6.8e-214
 Identities = 392/538 (72%), Positives = 454/538 (84%)

Query:    32 ATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKS 91
             A T+AAFARMTVEDS+K+LP EFYPSWVVFS RQKLTWLNHHL K+WPYV+EAASELIK+
Sbjct:    36 ANTVAAFARMTVEDSRKLLPPEFYPSWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKA 95

Query:    92 SVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIIL 151
             SVEPVLEQYRP I++SL FSK TLGTVAPQFTGVS+I+   +G+T+EL+MQWD N +I+L
Sbjct:    96 SVEPVLEQYRPAIVASLTFSKLTLGTVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVL 155

Query:   152 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 211
              +KT +GV+LP+QVKNIGFTGVFRLIFRPLV++FP F AVS SLREKKKLDF LKVVGGD
Sbjct:   156 GVKTLVGVSLPIQVKNIGFTGVFRLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGD 215

Query:   212 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLT 271
             IS IPGLS++IE TI DA+EDSITWPVRK++PI+PGDYS+LELKPVG LEVKLVQAK LT
Sbjct:   216 ISAIPGLSEAIEETIRDAVEDSITWPVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLT 275

Query:   272 NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 331
             NKDL+GKSDP+A +F+RPL EKTK+SKTINNDLNPIWNEHFEF+VED STQHLVVRIYDD
Sbjct:   276 NKDLVGKSDPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDD 335

Query:   332 EGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDTKYRGQVHLELLYCPFGMEN 391
             EG+Q+SELIGCAQ+RLCELEPG               QRDTK RG+VHLELLY P+G  N
Sbjct:   336 EGVQASELIGCAQIRLCELEPGKVKDVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGN 395

Query:   392 VFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVI 451
                NPF  + SMTSLE+VL N            +  + E  +S+KR++VI+RGVLSVTVI
Sbjct:   396 GIVNPFVTS-SMTSLERVLKN------------DTTDEENASSRKRKDVIVRGVLSVTVI 442

Query:   452 LAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIA 511
              AE +P  DLMGKADPYVVL+MKKS  ++KTRVVND LNP+WNQTFDFVVEDGLHDML+ 
Sbjct:   443 SAEEIPIQDLMGKADPYVVLSMKKSGAKSKTRVVNDSLNPVWNQTFDFVVEDGLHDMLVL 502

Query:   512 EVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRDT 569
             EVWDHDTFGKDY+GRCILTLTRVI+E EY D + LD +K+GKL+LHLKWM Q IYRD+
Sbjct:   503 EVWDHDTFGKDYIGRCILTLTRVIMEEEYKDWYPLDESKTGKLQLHLKWMAQSIYRDS 560

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0012505 "endomembrane system" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)]

 Score = 1962 (695.7 bits), Expect = 9.1e-203, P = 9.1e-203
 Identities = 375/539 (69%), Positives = 445/539 (82%)

Query:    32 ATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKS 91
             A TIAAFARMTV+DS+K+LP +FYPSWVVFS RQKL WLN  LEK+WPYVNEAASELIKS
Sbjct:    36 AKTIAAFARMTVQDSRKLLPGDFYPSWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKS 95

Query:    92 SVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED--GGSGVTMELEMQWDANSSI 149
             SVEPVLEQY P +L+SLKFSKFTLGTVAPQFTGVSI+E   G +G+TMELEMQWD N  I
Sbjct:    96 SVEPVLEQYTPAMLASLKFSKFTLGTVAPQFTGVSILESESGPNGITMELEMQWDGNPKI 155

Query:   150 ILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVG 209
             +L +KT LGV+LP++VKNIGFTGVFRLIF+PLVDEFP F A+SYSLREKK LDF LKV+G
Sbjct:   156 VLDVKTLLGVSLPIEVKNIGFTGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIG 215

Query:   210 GDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKG 269
             G++++IPG+SD+IE TI DAIEDSITWPVRKI+PILPGDYS+LELKPVG L+VK+VQAK 
Sbjct:   216 GELTSIPGISDAIEETIRDAIEDSITWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKD 275

Query:   270 LTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY 329
             L NKD+IGKSDPYA++F+RPLP++TKK+KTI+N LNPIWNEHFEFIVED STQHL VR++
Sbjct:   276 LANKDMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVF 335

Query:   330 DDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDTKYRGQVHLELLYCPFGM 389
             DDEG+ SS+LIG AQV L EL PG               QRDTK RGQV LELLYCP G 
Sbjct:   336 DDEGVGSSQLIGAAQVPLNELVPGKVKDIWLKLVKDLEIQRDTKNRGQVQLELLYCPLGK 395

Query:   390 ENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVT 449
             E    NPF P++S+T LEKVL       K  +  ++A +++K  + K+++VI+RGVLSVT
Sbjct:   396 EGGLKNPFNPDYSLTILEKVL-------KPESEDSDATDMKKLVTSKKKDVIVRGVLSVT 448

Query:   450 VILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDML 509
             V+ AE+LPA D MGKAD +VV+T+KKSET++KTRVV D LNP+WNQTFDFVVED LHD+L
Sbjct:   449 VVAAEDLPAVDFMGKADAFVVITLKKSETKSKTRVVPDSLNPVWNQTFDFVVEDALHDLL 508

Query:   510 IAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQPIYRD 568
               EVWDHD FGKD +GR I+TLTRV+LEGE+ + FELDG KSGKL +HLKW P+   RD
Sbjct:   509 TLEVWDHDKFGKDKIGRVIMTLTRVMLEGEFQEWFELDGAKSGKLCVHLKWTPRLKLRD 567

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 147/366 (40%), Positives = 223/366 (60%)

Query:    31 KATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIK 90
             KA  +     ++ +D KKI    F P W+ F   +++ WLN  L K+WPY+ EAA+ +I+
Sbjct:    35 KAVDMKLLGSLSRDDLKKICGDNF-PQWISFPAFEQVKWLNKLLSKMWPYIAEAATMVIR 93

Query:    91 SSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSII 150
              SVEP+LE YRP  ++SLKFSK TLG VAP+  G+ +       VTM+++++W  + +I+
Sbjct:    94 DSVEPLLEDYRPPGITSLKFSKLTLGNVAPKIEGIRVQSFKEGQVTMDVDLRWGGDPNIV 153

Query:   151 LAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSL--REKKKLDFKLKVV 208
             L + T L  ++P+Q+K++    V R+IF+ L DE P  +AV  +L    K ++D+ LK V
Sbjct:   154 LGV-TALVASIPIQLKDLQVFTVARVIFQ-LADEIPCISAVVVALLAEPKPRIDYTLKAV 211

Query:   209 GGDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPI--LPGDYSELELKPVGTLEVKLVQ 266
             GG ++ IPGLSD I+ T+   ++D + WP R +VPI  +P D S+LELKP G L V +V+
Sbjct:   212 GGSLTAIPGLSDMIDDTVDTIVKDMLQWPHRIVVPIGGIPVDLSDLELKPQGKLIVTVVK 271

Query:   267 AKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV 326
             A  L NK+LIGKSDPYA +++RP+ +   K+K I N+LNP+W++ FE I ED+ TQ L V
Sbjct:   272 ATNLKNKELIGKSDPYATIYIRPVFKY--KTKAIENNLNPVWDQTFELIAEDKETQSLTV 329

Query:   327 RIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQR--DTKYRGQVHLELLY 384
              ++D + +   E +G  ++ L  LE G                +  D K RG + L++ Y
Sbjct:   330 EVFDKD-VGQDERLGLVKLPLSSLEAGVTKELELNLLSSLDTLKVKDKKDRGSITLKVHY 388

Query:   385 CPFGME 390
               F  E
Sbjct:   389 HEFNKE 394

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008289 "lipid binding" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
 Identities = 126/420 (30%), Positives = 209/420 (49%)

Query:    39 ARMTVEDSKKILPAEF--YPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPV 96
             AR  VE S  +L       P W+     +++ W N  +  +WPY+++A   +I+SSV+P+
Sbjct:    41 ARPLVETSISVLLDLLPDIPLWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPL 100

Query:    97 LEQY-RPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKT 155
                Y   F + S++F   +LGT+ P   GV   E     +  E  ++W  N +I+L +K 
Sbjct:   101 FADYIGTFCIESIEFENLSLGTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKV 160

Query:   156 RLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTI 215
              L + + VQ+ ++ F  + R+  +PL+  FP F  V  SL EK  +DF LKV+GGD+ +I
Sbjct:   161 -LSLRIRVQLVDLQFFAIVRVALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSI 219

Query:   216 PGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDL 275
             PGL   ++ TI   +     WP    +PIL    + ++ KPVG L V +++A+ L  KDL
Sbjct:   220 PGLYRYVQETIKRQVSSMYHWPQVLEIPILDSSTASVK-KPVGLLHVSILRARNLLKKDL 278

Query:   276 IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 335
             +G SDPY  L +       KK+     +LNP WNEHF+ IV+D ++Q L + ++D + + 
Sbjct:   279 LGTSDPYVKLSLTGEKLPAKKTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVG 338

Query:   336 SSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDT---KYRGQVHLELLYCPFGMENV 392
               + +G   + L ++ PG                 D+   K RG++ ++L Y PF  E++
Sbjct:   339 GHDRLGMQMIPLQKINPGERKEFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESI 398

Query:   393 FTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVIL 452
                  +     +  +  L+     L       + +E +K  S     V+ RG    T +L
Sbjct:   399 KRRKESREEKSSEDDDFLSQAG-LLSVAVQSAKDVEGKKKHSNPYAVVLFRGEKKKTKML 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

TAIR|locus:2198581 SYTB "AT1G20080" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
 Identities = 113/348 (32%), Positives = 184/348 (52%)

Query:    56 PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVL-EQYRPFILSSLKFSKFT 114
             P WV      ++ WLN  +  +WPY+++A  ++ KS  +P++ EQ   + + S++F   T
Sbjct:    60 PMWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLT 119

Query:   115 LGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF 174
             LG++ P F G+ +       + MEL ++W  N +II+  K   G+   VQV ++      
Sbjct:   120 LGSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKA-FGLKATVQVIDLQVYATP 178

Query:   175 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATIHDAIEDSI 234
             R+  +PLV  FP FA +  SL +K ++DF LK++G D+  IPGL   ++  I D + +  
Sbjct:   179 RITLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMY 238

Query:   235 TWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT 294
              WP    V I+  D S+   KPVG L VK+++A  L  KDL+G SDPY  L +       
Sbjct:   239 LWPKTLNVQIM--DPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPG 296

Query:   295 KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGX 354
             KK+   +++LNP WNE F+ +V++  +Q L + +YD E +   + IG   ++L +L P  
Sbjct:   297 KKTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEE 356

Query:   355 XXXXXXXXXXXXXXQRDT--KYRGQVHLELLYCPFGMENVFTNPFAPN 400
                           +     K RGQ+ +E+ Y PF  +++  N   PN
Sbjct:   357 PKLMTLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPN 404

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009306 "protein secretion" evidence=IMP

UNIPROTKB|Q9BSJ8 ESYT1 "Extended synaptotagmin-1" [Homo sapiens (taxid:9606)]

 Score = 312 (114.9 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
 Identities = 90/310 (29%), Positives = 154/310 (49%)

Query:    39 ARMTVEDSKKILPAEFY------PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSS 92
             AR  ++D +++     Y      P+WV F   +K  WLN  + ++WP++ +   +L+  +
Sbjct:   105 ARQLLDDEEQLTAKTLYMSHRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAET 164

Query:    93 VEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIE-DGGSGVTMELEMQWDANSSIIL 151
             V P +    P  L +  F++  LG    +  GV +        + ++L + +  +  I +
Sbjct:   165 VAPAVRGSNPH-LQTFTFTRVELGEKPLRIIGVKVHPGQRKEQILLDLNISYVGDVQIDV 223

Query:   152 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 211
              +K     A    VK +   GV R+I  PL+ + P   AVS     +  LD     +  +
Sbjct:   224 EVKKYFCKA---GVKGMQLHGVLRVILEPLIGDLPFVGAVSMFFIRRPTLDINWTGMT-N 279

Query:   212 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG--DYSELELK-PVGTLEVKLVQAK 268
             +  IPGLS   +  I D+I   +  P R +VP++P   D ++L    P G + + L+ A+
Sbjct:   280 LLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAAR 339

Query:   269 GLTNKD-----LI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQ 322
             GL++KD     LI GKSDPYA+  VR L  +T  S+ I+ +LNP W E +E +V +   Q
Sbjct:   340 GLSSKDKYVKGLIEGKSDPYAL--VR-LGTQTFCSRVIDEELNPQWGETYEVMVHEVPGQ 396

Query:   323 HLVVRIYDDE 332
              + V ++D +
Sbjct:   397 EIEVEVFDKD 406

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00020443 esyt-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 379 (138.5 bits), Expect = 1.6e-34, Sum P(2) = 1.6e-34
 Identities = 90/310 (29%), Positives = 164/310 (52%)

Query:    40 RMTVEDSKKILPAEFY--PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVL 97
             R T    ++++ A+    P+WV F   +++ WLN  + +LWPYV E     +   + P +
Sbjct:    58 RATALREREVIMAQLQDLPAWVQFPDTERVEWLNKVIHQLWPYVGEYTKTFMNDFIIPQV 117

Query:    98 EQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED--GGSGVTMELEMQWDANSSIILAIKT 155
             +   P +  + KF+K  +G +  +  G+ +     G   + +++++ +  ++   ++   
Sbjct:   118 KAQMPGMFKNFKFTKMDMGDIPCRVGGIKVYTTNVGRDRIIVDMDVAYAGDADFTVSCCG 177

Query:   156 RLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTI 215
               G      + NI F+G  R I +PL+   P    VS +  E  K+DF L  +G ++  +
Sbjct:   178 FTG-----GMNNIQFSGKLRAILKPLLPYPPMVGGVSGTFLEMPKMDFNLTGMG-EMVEL 231

Query:   216 PGLSDSIEATIHDAIEDSITWPVRKIVPILPG-DYSELEL-KPVGTLEVKLVQAKGLTNK 273
             PGL D+I + I+  I      P   +VP+ P  D ++L   +P G + +K+++AK L N+
Sbjct:   232 PGLIDAIRSVINSQIAALCVLPNEIVVPLAPDVDVTQLYFPEPDGVVRLKIIEAKNLENR 291

Query:   274 DLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY 329
             D+     GKSDPYA + V     +  K++TI++DLNPIWNE+FE +V+    Q L + ++
Sbjct:   292 DISFIKKGKSDPYAEIQVG---SQFFKTRTIDDDLNPIWNEYFEAVVDQADGQKLRIELF 348

Query:   330 DDEGIQSSEL 339
             D++  +  EL
Sbjct:   349 DEDQGKDEEL 358

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

FB|FBgn0039208 Esyt2 [Drosophila melanogaster (taxid:7227)]

 Score = 302 (111.4 bits), Expect = 7.6e-30, Sum P(2) = 7.6e-30
 Identities = 92/332 (27%), Positives = 159/332 (47%)

Query:    31 KATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIK 90
             K   IA  + +  E    +   +  P+WV F   ++  WLN  L+++WP  N  A  L+K
Sbjct:   122 KKRDIAKASALASEKDVILARIDELPAWVYFPDVERCEWLNKILKQVWPNANHFARTLVK 181

Query:    91 SSVEP-VLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDG--GSGVTMELEMQWDANS 147
              ++EP V      + +   +F +  LGT+ P+  GV I +     + + M+L++ + ++ 
Sbjct:   182 ETIEPNVALALANYKMHGFRFDRIILGTIPPRIGGVKIYDKNVDRNEIIMDLDLFYASDC 241

Query:   148 SIILAIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKV 207
              I       LG  +   +K+    G  R++ +PL+   P    +         +DF L  
Sbjct:   242 DI----NFYLG-GMKGGIKDFQIHGWVRVVMKPLIRSMPLVGGLQIFFLNNPNIDFNL-- 294

Query:   208 VGG-DISTIPGLSDSIEATIHDAIEDSITWPVRKIVPI-LPGDYSELELK---PVGTLEV 262
             VG  D   +PGLSD +   I + I + +  P +  +PI L  + S + LK   P G L +
Sbjct:   295 VGVIDFMDMPGLSDLLRRIIVEQIGNVMVLPNK--LPISLSEEVSAVALKMPEPEGILRI 352

Query:   263 KLVQAKGLTNKDLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 318
              +V+AK L  KD+     GKSDPYA++ V     KT+    I+N++NP W+   E  V  
Sbjct:   353 HVVEAKDLMKKDISVLGKGKSDPYAIINVGAQEFKTQ---IIDNNVNPKWDYWCEATVFI 409

Query:   319 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 350
             E  Q + +++ D +  +  E +G A + +  +
Sbjct:   410 EMGQFVEIQLKDSDDSKKDENLGRASIDIASV 441

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|3053 Esyt1 "extended synaptotagmin-like protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 316 (116.3 bits), Expect = 9.4e-30, Sum P(2) = 9.4e-30
 Identities = 91/310 (29%), Positives = 155/310 (50%)

Query:    39 ARMTVEDSKKILPAEFY------PSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSS 92
             AR  ++D ++I     Y      P+WV F   +K  WLN  + ++WP++ +   +L+  +
Sbjct:    97 ARQLLDDEERITAETLYMSHRELPAWVSFPDVEKAEWLNKIVVQVWPFLGQYMEKLLAET 156

Query:    93 VEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIEDGGSG-VTMELEMQWDANSSIIL 151
             V P +    P  L +  F++  LG    +  GV +        + ++L + +  +  I +
Sbjct:   157 VAPAVRGANPH-LQTFTFTRVELGEKPVRIIGVKVHPSQRKDQILLDLNVSYVGDLQIDV 215

Query:   152 AIKTRLGVALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGD 211
              +K     A    VK +   GV R+I  PL+ + P   AVS    ++  LD     +  +
Sbjct:   216 EVKKYFCKA---GVKGMQLHGVLRVILEPLIGDLPIVGAVSMFFIKRPTLDINWTGMT-N 271

Query:   212 ISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPG--DYSELELK-PVGTLEVKLVQAK 268
             +  IPGLS   +  I D+I   +  P R +VP++P   D ++L    P G + + L+ A+
Sbjct:   272 LLDIPGLSSLSDTMIMDSIAAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAAR 331

Query:   269 GLTNKD-----LI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQ 322
             GL++KD     LI GKSDPYA+  VR +  +T  S+ I+ +LNP W E +E IV +   Q
Sbjct:   332 GLSSKDKYVKGLIEGKSDPYAL--VR-VGTQTFCSRVIDEELNPHWGETYEVIVHEVPGQ 388

Query:   323 HLVVRIYDDE 332
              + V ++D +
Sbjct:   389 EIEVEVFDKD 398

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1098699 Esyt3 "extended synaptotagmin-like protein 3" [Mus musculus (taxid:10090)]

 Score = 317 (116.6 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
 Identities = 89/307 (28%), Positives = 157/307 (51%)

Query:    50 LPAEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLK 109
             L  +  P+W+ F   +++ W N  + ++WPY++      I+  +EP + + +   L +  
Sbjct:   105 LRGQHLPAWIHFPDVERVEWANKIIIQIWPYLSMIMENKIREKLEPKIRE-KSIHLRTFT 163

Query:   110 FSKFTLGTVAPQFTGVSIIEDGGSG--VTMELEMQWDANSSIILAI-KTRLGVALPVQVK 166
             F+K   G   P+  GV +  D  +   VT++L++ +  +  I + + K R GV+  VQ++
Sbjct:   164 FTKLYFGQKCPKVNGVKVHTDKRNRRKVTLDLQICYIGDCEISVELQKIRGGVS-GVQLQ 222

Query:   167 NIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGGDISTIPGLSDSIEATI 226
                  G  R+I  PL+ + P   AV+    +K  L      +  ++  +PG+++  ++ +
Sbjct:   223 -----GTLRVILEPLLVDKPFIGAVTVFFLQKPHLQINWTGLT-NLLDMPGINELSDSLL 276

Query:   227 HDAIEDSITWPVRKIVPILPG-DYSELELK-PVGTLEVKLVQAKGLTNKD----LIGKSD 280
              D I   +  P R  VP+  G D + L +  P G + V L++AK L  KD    L GKSD
Sbjct:   277 EDLIAAHLVLPNRVTVPVKKGLDVTNLRVPLPCGVIRVHLLEAKKLAQKDNFLGLGGKSD 336

Query:   281 PYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELI 340
             PYA + +     +  +S+TI  +LNP WNE FEF+V +   Q L V +YD++     + +
Sbjct:   337 PYAKVSIGL---QHCRSRTIYKNLNPTWNEVFEFMVYEVPGQDLEVDLYDED-TDKDDFL 392

Query:   341 GCAQVRL 347
             G  Q+ L
Sbjct:   393 GSLQICL 399

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L706	SYT5_ARATH	No assigned EC number	0.7527	0.9226	0.9375	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	569
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-36
smart00239	101	smart00239, C2, Protein kinase C conserved region	1e-27
cd00030	102	cd00030, C2, C2 domain	1e-26
pfam00168	85	pfam00168, C2, C2 domain	2e-25
cd00030	102	cd00030, C2, C2 domain	3e-25
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-23
pfam00168	85	pfam00168, C2, C2 domain	1e-22
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-20
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	7e-20
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	4e-18
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-17
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	1e-16
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	2e-16
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	3e-16
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	5e-16
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-15
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	1e-15
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	3e-15
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	6e-15
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	6e-15
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	9e-15
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	3e-14
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	4e-14
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	1e-13
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	3e-13
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	8e-13
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	9e-13
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	1e-12
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	2e-12
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-12
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	2e-12
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	3e-12
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	3e-12
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	4e-12
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	4e-12
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	5e-12
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	1e-11
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	1e-11
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	1e-11
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-11
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-11
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	3e-11
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	4e-11
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	4e-11
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	5e-11
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	1e-10
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	1e-10
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	1e-10
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	1e-10
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-10
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	2e-10
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	2e-10
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	3e-10
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	3e-10
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	3e-10
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	4e-10
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	5e-10
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	6e-10
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	8e-10
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-09
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-09
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	2e-09
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	2e-09
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	2e-09
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	2e-09
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	2e-09
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	2e-09
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	2e-09
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	2e-09
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-09
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	3e-09
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	3e-09
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	3e-09
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	4e-09
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	4e-09
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	4e-09
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	8e-09
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	1e-08
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	1e-08
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	1e-08
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	1e-08
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-08
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	2e-08
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	2e-08
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	5e-08
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	6e-08
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	9e-08
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	1e-07
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	1e-07
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	1e-07
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	1e-07
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	1e-07
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	2e-07
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	3e-07
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	3e-07
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	3e-07
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	6e-07
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	7e-07
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	7e-07
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	1e-06
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	2e-06
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	2e-06
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	2e-06
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	2e-06
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	2e-06
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-06
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	3e-06
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	3e-06
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	3e-06
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	5e-06
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	5e-06
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	7e-06
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	7e-06
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	1e-05
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	1e-05
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	2e-05
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	2e-05
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	3e-05
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	3e-05
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	8e-05
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	9e-05
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	1e-04
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	2e-04
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	2e-04
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	3e-04
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	3e-04
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	4e-04
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	4e-04
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	6e-04
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	8e-04
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	0.001
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	0.002
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	0.002
cd08685	119	cd08685, C2_RGS-like, C2 domain of the Regulator O	0.003

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score =  144 bits (366), Expect = 2e-36
 Identities = 133/604 (22%), Positives = 224/604 (37%), Gaps = 113/604 (18%)

Query: 1   MSLMMLFFYFVFLILLLLWLYYYYYYYYCMKATTIAAFARMTVEDSKKILPAEFYPSWVV 60
            S +  +  F F  L  + L   Y Y  C+K        R   +  ++ L  E      +
Sbjct: 167 ASWIFGYLGFSFASLFFIILVTMYVYRTCIKR-----VRRNIRDLVQQELSEE-----KL 216

Query: 61  FSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAP 120
            +  + + WLN  L+K WP +  + S+ +   V   L +  P  + +L   +FTLG+  P
Sbjct: 217 ENDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPP 276

Query: 121 QFTGVSIIEDGGSGVTMELEMQWDA-------------------NSSIILAIK--TRLGV 159
           +  G+       S     + M  D                    N  I L +K     G 
Sbjct: 277 RIDGIRSYPSTESDT---VVMDVDFSFTPHDISDVTATSARASVNPKISLVVKKGKSFGS 333

Query: 160 A-LPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVGG-----DIS 213
             LP+ V+++ F G  R+    L+ ++P    VS+ L E  + DF L  +GG     DI 
Sbjct: 334 FTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGVDIF 392

Query: 214 TIPGLSDSIEATIHDAIEDSITWPVRKIVPI-LPGDYSELELKPVGTLEVKLVQAKGLTN 272
            IPGLS  I+  I+  +   +  P    + I +    +      +G +EVK+  A+GL  
Sbjct: 393 AIPGLSRFIQEIINSTLGPMLLPP--NSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKK 450

Query: 273 KDLI--GKSDPYAVL----FVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV 326
            D    G  DPY  +     V        K++   N LNP+WNE F +I+ +  T  L +
Sbjct: 451 SDSTINGTVDPYITVTFSDRVIG------KTRVKKNTLNPVWNETF-YILLNSFTDPLNL 503

Query: 327 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ--RDTKYRGQVHLELLY 384
            +YD    +S +++G  Q+ L  L    VK       K+   +  R+TK  G++  +L +
Sbjct: 504 SLYDFNSFKSDKVVGSTQLDLALLHQNPVK-------KNELYEFLRNTKNVGRLTYDLRF 556

Query: 385 CPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRG 444
            P   +                                       E   S +  E    G
Sbjct: 557 FPVIEDK-------------------------------------KELKGSVEPLEDSNTG 579

Query: 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSE--TRNKTRVVNDCLNPIWNQTFDFVVE 502
           +L VT+   + L             + T  K    T           +P WN  ++ +V 
Sbjct: 580 ILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTN----HPSWNLQYNVLVT 635

Query: 503 DGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMP 562
           D  +  +    +D  +     +     TL  +I      D F +   ++ K ++ +    
Sbjct: 636 DRKNSSIKVVTFDVQS--GKVIATEGSTLPDLIDRTL--DTFLVFPLRNPKGRIFITNYW 691

Query: 563 QPIY 566
           +PIY
Sbjct: 692 KPIY 695

Length = 1227

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score =  106 bits (265), Expect = 1e-27
 Identities = 37/101 (36%), Positives = 54/101 (53%)

Query: 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 318
           TL VK++ A+ L  KD  GKSDPY  + +   P++ KK+K + N LNP+WNE FEF V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 319 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVW 359
                L + +YD +     + IG   + L +L  G   +  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score =  103 bits (259), Expect = 1e-26
 Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 3/104 (2%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
           L V +++A+ L  KDL GKSDPY  + +    ++  K+K + N LNP+WNE FEF V D 
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSL--GGKQKFKTKVVKNTLNPVWNETFEFPVLDP 58

Query: 320 STQHLVVRIYDDEGIQSSELIGCAQVRLCELE-PGKVKDVWLKL 362
            +  L V ++D +     + +G  ++ L EL   GK  ++WL L
Sbjct: 59  ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score =  100 bits (250), Expect = 2e-25
 Identities = 33/85 (38%), Positives = 45/85 (52%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
           L V ++ AK L  KDL GKSDPY  + +    + TKK+K + N LNP+WNE F F V   
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 320 STQHLVVRIYDDEGIQSSELIGCAQ 344
               L + +YD +     + IG   
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 99.8 bits (249), Expect = 3e-25
 Identities = 45/98 (45%), Positives = 63/98 (64%), Gaps = 2/98 (2%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
           L VTVI A NLPA DL GK+DPYV +++   +   KT+VV + LNP+WN+TF+F V D  
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKF-KTKVVKNTLNPVWNETFEFPVLDPE 59

Query: 506 HDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTD 542
            D L  EVWD D F KD ++G   + L+ ++  G+  +
Sbjct: 60  SDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGE 97

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 94.5 bits (235), Expect = 2e-23
 Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 2/101 (1%)

Query: 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRN-KTRVVNDCLNPIWNQTFDFVVED 503
            L+V +I A NLP  D  GK+DPYV +++        KT+VV + LNP+WN+TF+F V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 504 GLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDC 543
                L  EV+D D FG+D ++G+  + L+ ++L G +   
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 91.6 bits (228), Expect = 1e-22
 Identities = 40/85 (47%), Positives = 54/85 (63%), Gaps = 2/85 (2%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRN-KTRVVNDCLNPIWNQTFDFVVEDG 504
           L VTVI A+NLP  DL GK+DPYV +++   +    KT+VV + LNP+WN+TF F V   
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 505 LHDMLIAEVWDHDTFGKD-YMGRCI 528
               L  EV+D+D FGKD ++G   
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 86.6 bits (215), Expect = 2e-20
 Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 18/131 (13%)

Query: 258 GTLEVKLVQAKGLTNKDLI------GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEH 311
           G L + +++A+ L  KD        GKSDPY ++ V     +T KSK I  +LNP WNE 
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA---QTFKSKVIKENLNPKWNEV 57

Query: 312 FEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRD 371
           +E +V++   Q L + ++D++  +   L G   + L  +E     D WL L    DV+  
Sbjct: 58  YEAVVDEVPGQELEIELFDEDPDKDDFL-GRLSIDLGSVEKKGFIDEWLPLE---DVK-- 111

Query: 372 TKYRGQVHLEL 382
               G++HL+L
Sbjct: 112 ---SGRLHLKL 119

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 85.0 bits (211), Expect = 7e-20
 Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 8/123 (6%)

Query: 444 GVLSVTVILAENLPASDLM------GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTF 497
           GVL + VI A++L A D        GK+DPYV++  +      K++V+ + LNP WN+ +
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIV--RVGAQTFKSKVIKENLNPKWNEVY 58

Query: 498 DFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLH 557
           + VV++     L  E++D D    D++GR  + L  V  +G   +   L+  KSG+L L 
Sbjct: 59  EAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLK 118

Query: 558 LKW 560
           L+W
Sbjct: 119 LEW 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 80.2 bits (198), Expect = 4e-18
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 15/130 (11%)

Query: 444 GVLSVTVILAENLPASDLM--GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV 501
           GVL V V+ A++L A D    GK+DPY +L++     R KT+ + + LNP WN   +F +
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV--GAQRFKTQTIPNTLNPKWNYWCEFPI 58

Query: 502 EDGLHDMLIAEVWDHDTF-GKDYMGRCILTLTRVILEGE-------YT---DCFELDGTK 550
               + +L   +WD D F GKDY+G   + L  V  +G+        T            
Sbjct: 59  FSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVV 118

Query: 551 SGKLKLHLKW 560
           SG++ L   W
Sbjct: 119 SGEIHLQFSW 128

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETR-NKTRVVNDCLNPIWNQTFDFVVED 503
           + ++ ++ AENL A    G +DPYV L     + R  KTR + D LNP W++ F+  V  
Sbjct: 2   LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPA 61

Query: 504 GLHDMLIAEVWDHDTFGK-DYMGRCILTLT 532
           G    + A VWD    GK D  GR  L L 
Sbjct: 62  GEPLWISATVWDRSFVGKHDLCGRASLKLD 91

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 76.5 bits (189), Expect = 1e-16
 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 5/90 (5%)

Query: 441 IIRGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTF 497
           +    L+V V  A+NL   D  G +DPYV L +    K+ET+ KT+ +   LNP+WN+TF
Sbjct: 10  VKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETF 69

Query: 498 DFVVEDGLHD-MLIAEVWDHDTFGK-DYMG 525
            F ++    D  L  EVWD D   + D+MG
Sbjct: 70  TFDLKPADKDRRLSIEVWDWDRTTRNDFMG 99

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE 502
            G+L V V+   NL   D    +DPYVVLT+   +   KTRV+   LNP+WN+     V 
Sbjct: 1   LGLLKVRVVRGTNLAVRDFTS-SDPYVVLTLGNQKV--KTRVIKKNLNPVWNEELTLSVP 57

Query: 503 DGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVI 535
           +     L  EV+D DTF KD  MG   + L  ++
Sbjct: 58  N-PMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLV 90

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 74.9 bits (185), Expect = 3e-16
 Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 12/116 (10%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMK-----KSETRNKTRVVNDCLNPIWNQTFDFV 500
           L+V VI AENLP++D  GK+DP+V   +      K++T  KT      LNP+WN++F+  
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKT------LNPVWNESFEVP 54

Query: 501 VEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKLK 555
           V   +  +L  EV+D D  GK D +G   + L+ +  E        LDG   GKL 
Sbjct: 55  VPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLG 110

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 73.8 bits (182), Expect = 5e-16
 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 2/106 (1%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
           L V ++ A+ L + D  GKSDP+   ++    EK  K+KTI   LNP+WNE FE  V   
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNG--EKVFKTKTIKKTLNPVWNESFEVPVPSR 58

Query: 320 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 365
               L V +YD +     +L+G A + L +LEP +  ++ L L   
Sbjct: 59  VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQ 104

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 9/130 (6%)

Query: 258 GTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 315
           G L V +V+AK L  KD    GKSDPYA+L V     +  K++TI N LNP WN   EF 
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV---GAQRFKTQTIPNTLNPKWNYWCEFP 57

Query: 316 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKLVKDLDVQRDT 372
           +     Q L + ++D +     + +G   + L E+         D W+ L K     + +
Sbjct: 58  IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITL-KSTRPGKTS 116

Query: 373 KYRGQVHLEL 382
              G++HL+ 
Sbjct: 117 VVSGEIHLQF 126

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 317
           G L+VK+++A GL   D+ GKSDP+ VL +     +T    TI   LNP WN+ F F ++
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQT---HTIYKTLNPEWNKIFTFPIK 57

Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ 377
           D     L V +YD++  +  E +G   + L  ++ G+ K  W  L KD  ++   K  G 
Sbjct: 58  D-IHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERK--WYAL-KDKKLRTRAK--GS 111

Query: 378 VHLELLY 384
           + LE+  
Sbjct: 112 ILLEMDV 118

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 7/107 (6%)

Query: 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT-KKSKTINNDLNPIWNEHFEFIVE 317
            L++ L + + L  +D  G SDPY V F      KT  KSKTI  +LNP+W+E F   +E
Sbjct: 1   QLDIHLKEGRNLAARDRGGTSDPY-VKF--KYGGKTVYKSKTIYKNLNPVWDEKFTLPIE 57

Query: 318 DESTQHLVVRIYD-DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363
           D  TQ L ++++D D G+   + +G A V L  LE  K  +V LKL 
Sbjct: 58  D-VTQPLYIKVFDYDRGLT-DDFMGSAFVDLSTLELNKPTEVKLKLE 102

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 70.8 bits (174), Expect = 6e-15
 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 4/92 (4%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 503
           G L V VI A  L A+D+ GK+DP+ VL +  +  R +T  +   LNP WN+ F F ++D
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNA--RLQTHTIYKTLNPEWNKIFTFPIKD 58

Query: 504 GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 534
            +HD+L   V+D D   K +++G+  + L  +
Sbjct: 59  -IHDVLEVTVYDEDKDKKPEFLGKVAIPLLSI 89

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 71.1 bits (175), Expect = 6e-15
 Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
           L V++++A  +T  DL+   D Y  L++    ++ K++KTI N +NP+WNE FEF ++ +
Sbjct: 2   LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ 61

Query: 320 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
               L + + D++ +    L G     + +L+ G+   V   L
Sbjct: 62  VKNVLELTVMDEDYVMDDHL-GTVLFDVSKLKLGEKVRVTFSL 103

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 70.8 bits (174), Expect = 9e-15
 Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 317
           GTLEV L+ AKGL + D +GK DPY ++  R    K+K +K   +  NP WNE F+F VE
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAK--GDGRNPEWNEKFKFTVE 58

Query: 318 D---ESTQHLVVRIYDDEGIQSSELIGCAQVRL 347
                    L++RI D +     + IG A + L
Sbjct: 59  YPGWGGDTKLILRIMDKDNFSDDDFIGEATIHL 91

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 1/113 (0%)

Query: 445 VLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVED 503
           +L+V V+ A N+   DL+   D YV L +   S+ + +T+ + + +NP+WN+TF+F ++ 
Sbjct: 1   LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS 60

Query: 504 GLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKL 556
            + ++L   V D D    D++G  +  ++++ L  +    F L+     +L++
Sbjct: 61  QVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEV 113

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 31/136 (22%)

Query: 253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP----------------------- 289
              P+  L+V +++AKGL  KD+ G SDPY +L + P                       
Sbjct: 23  AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLK 82

Query: 290 --LPEK-TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVR 346
             +P K  K ++     LNP+WNE F F VED S   L + I+D +     + +GC  + 
Sbjct: 83  DTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIP 138

Query: 347 LCELEPGKVKDVWLKL 362
           L +L    + D W KL
Sbjct: 139 LKDLPSCGL-DSWFKL 153

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 67.6 bits (166), Expect = 1e-13
 Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 444 GVLSVTVILAENLPASDLMGKA-DPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE 502
           GVL+VT+  A  L  SD++G   DPYV  ++       +T+V  D  NP+WN+T  +++ 
Sbjct: 2   GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETK-YILV 60

Query: 503 DGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDC---FELDGTKSGKLKLHL 558
           + L + L   V+D +   KD  +G     L+ ++   E  +       +G   G+L   L
Sbjct: 61  NSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDL 120

Query: 559 KWMP 562
           ++ P
Sbjct: 121 RFFP 124

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 8/91 (8%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDF-V 500
           L+V V+ A NLP SD  G +DPYV +++    KK + + KT V    LNP++N+ F F V
Sbjct: 16  LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKK-KTSVKKGTLNPVFNEAFSFDV 74

Query: 501 VEDGLHDM-LIAEVWDHDTFGKD-YMGRCIL 529
             + L ++ L+  V D D+ G++  +G+ +L
Sbjct: 75  PAEQLEEVSLVITVVDKDSVGRNEVIGQVVL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 65.0 bits (159), Expect = 8e-13
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 5/99 (5%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 503
           G L V +I A+ L  +D +GK DPYV++   +++ R       D  NP WN+ F F VE 
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQC-RTQERKSKVAKGDGRNPEWNEKFKFTVEY 59

Query: 504 -GLHDM--LIAEVWDHDTF-GKDYMGRCILTLTRVILEG 538
            G      LI  + D D F   D++G   + L  +  EG
Sbjct: 60  PGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEG 98

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 65.3 bits (160), Expect = 9e-13
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 315
             L V +++A+ L   D  G SDPY  + +    +K KK KT      LNP++NE F F 
Sbjct: 14  ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73

Query: 316 VEDESTQH--LVVRIYDDEGIQSSELIGC 342
           V  E  +   LV+ + D + +  +E+IG 
Sbjct: 74  VPAEQLEEVSLVITVVDKDSVGRNEVIGQ 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 13/129 (10%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI-NNDLNPIWNEHFEFIV 316
           GTL V +++A+ L NK  + K DPY VL +      TKK+KT      +P W+E   F +
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEI 57

Query: 317 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCE-LEPGKVKDVWLKLVKDLDVQRDTKYR 375
            ++    L V ++DD+  +  +LIG  +V L   L+ G+  D W       ++    +Y 
Sbjct: 58  TEDKKPILKVAVFDDDK-RKPDLIGDTEVDLSPALKEGEFDD-W------YELTLKGRYA 109

Query: 376 GQVHLELLY 384
           G+V+LEL +
Sbjct: 110 GEVYLELTF 118

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 64.1 bits (157), Expect = 2e-12
 Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 10/132 (7%)

Query: 257 VGTLEVKLVQAKGLTNKDLIGKS-DPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 315
           +G L V +  A+GL   D+IG + DPY    +     +  ++K   +  NP+WNE    +
Sbjct: 1   IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSIS-NRRELARTKVKKDTSNPVWNETKYIL 59

Query: 316 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKY 374
           V    T+ L + +YD    +  +LIG A+  L  L +  + +++        ++ R+ K 
Sbjct: 60  VNSL-TEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENL------TKNLLRNGKP 112

Query: 375 RGQVHLELLYCP 386
            G+++ +L + P
Sbjct: 113 VGELNYDLRFFP 124

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 13/108 (12%)

Query: 445 VLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDFV 500
           V+++ ++  +NLP  D  G +DPYV   +     KS+  +KT      LNP W + FD  
Sbjct: 1   VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKT------LNPQWLEQFDLH 54

Query: 501 VEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDCFELD 547
           + D    +L  EVWD DT  KD ++GRC + L+   L  E T   EL+
Sbjct: 55  LFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSA--LPREQTHSLELE 100

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 7/101 (6%)

Query: 446 LSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDF--V 500
           L VTV+ A +LP  D     +PYV   +L  +  +++ +T+ V   LNP WNQTF++  V
Sbjct: 18  LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77

Query: 501 VEDGLHDMLI-AEVWDHDTFGK-DYMGRCILTLTRVILEGE 539
             + L +  +   VWD+D  G+ D++G  ++ L   +L+ E
Sbjct: 78  RRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDDE 118

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 430 EKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCL 489
           EK    + +     G L V ++   +L   +  GK+DPY  ++M      +KT+VV+D L
Sbjct: 1   EKAYLARSQRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM--GSQEHKTKVVSDTL 58

Query: 490 NPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KDYMGR 526
           NP WN +  F V+D   D+L   V+D D F   D++GR
Sbjct: 59  NPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGR 96

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 438 REVIIRGVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWN 494
           R    R  L VTV    NLP  D     DPYV   +L  K   TR KT V  D LNP+++
Sbjct: 10  RYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFD 69

Query: 495 QTFDFVV--EDGLHDMLIAEVWDHDTF---GKDYMGRCILTLTRVILEGEYTDCFEL 546
           +TF+F V  E+     L   V +  +F    K  +G+ ++ L+ + L   +T  ++L
Sbjct: 70  ETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 30/122 (24%)

Query: 445 VLSVTVILAENLPASDLMGKADPYVVL---------TMKKSETRNK-------------- 481
           VL VTVI A+ L A D+ G +DPY +L           +KS+ R                
Sbjct: 29  VLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAK 88

Query: 482 ----TRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 537
               T V    LNP+WN+TF F VED  +D L  ++WDHD    D++G   + L  +   
Sbjct: 89  SIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC 145

Query: 538 GE 539
           G 
Sbjct: 146 GL 147

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 63.0 bits (154), Expect = 4e-12
 Identities = 22/75 (29%), Positives = 39/75 (52%)

Query: 448 VTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHD 507
           V V+ A NL   D  GK+DPY+ + + K +  ++   + + LNP++ + F+       + 
Sbjct: 4   VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNS 63

Query: 508 MLIAEVWDHDTFGKD 522
           +L   V D+D  G D
Sbjct: 64  ILKISVMDYDLLGSD 78

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 6/111 (5%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEFI 315
             L V ++QA  L   D+ G SDPY  +++  LP+K KK  +K     LNP++NE F F 
Sbjct: 16  NQLTVGIIQAADLPAMDMGGTSDPYVKVYL--LPDKKKKFETKVHRKTLNPVFNETFTFK 73

Query: 316 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 364
           V   +   + LV  +YD +     +LIG  +V L  ++ G V + W  L  
Sbjct: 74  VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLES 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 12/99 (12%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDF 499
           R  L V +I   NL A D  G +DP+V L +K     ++++KT+V    LNP +N+ F +
Sbjct: 12  RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFY 71

Query: 500 VVEDGLHD----MLIAEVWDHDTFGK--DYMGRCILTLT 532
            ++    D     L   VWD D  GK  DY+G   L + 
Sbjct: 72  DIK--HSDLAKKTLEITVWDKD-IGKSNDYIGGLQLGIN 107

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 10/100 (10%)

Query: 438 REVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWN 494
           R V   G L+V ++ A+NL   D+ G +DPYV + +    K   + KT +    LNP +N
Sbjct: 9   RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYN 68

Query: 495 QTFDFVVEDGLHDM----LIAEVWDHDTFGK-DYMGRCIL 529
           ++F F V      +    LI  V D+D  GK D +G+ +L
Sbjct: 69  ESFSFEVP--FEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 23/130 (17%)

Query: 265 VQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF-----IVEDE 319
           V  K L    L GK D  A +  R      KK++ + N+LNP+WNE FE+        DE
Sbjct: 3   VSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDE 57

Query: 320 STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR---G 376
           S   L + + D E +  + LIG A V L +L    + +V   L+       D+  R    
Sbjct: 58  S---LEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLL-------DSNGRPTGA 107

Query: 377 QVHLELLYCP 386
            + LE+ Y P
Sbjct: 108 TISLEVSYQP 117

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 8/93 (8%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDF 499
             ++V +I A NL A D+ G +DPYV + +    K+ E + KT +    LNP++N++F F
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKK-KTVIKKRTLNPVFNESFIF 73

Query: 500 VVE-DGLHDM-LIAEVWDHDTFGK-DYMGRCIL 529
            +  + L +  LI  V D D   + D +G+  L
Sbjct: 74  NIPLERLRETTLIITVMDKDRLSRNDLIGKIYL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 66.7 bits (163), Expect = 2e-11
 Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 4/120 (3%)

Query: 444  GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 503
            G L++ +   ENLP+SD  G +DP+V L + +     KT+VV   LNP+WN+ F   V +
Sbjct: 1040 GYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVY-KTKVVKKTLNPVWNEEFTIEVLN 1098

Query: 504  GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKLK--LHLKW 560
             + D+L   V D D+  K D +G   + L+++   G       LDG     L   LH  +
Sbjct: 1099 RVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGF 1158

Length = 1227

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 10/88 (11%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTF-- 497
            G L V V  A+NLPA    G +D +V   +L  K  +++ KT VV   +NP+WN TF  
Sbjct: 26  TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVY 85

Query: 498 -DFVVEDGLHDMLIAE--VWDHDTFGKD 522
                ED L    + E  VWDHD    +
Sbjct: 86  DGVSPED-LSQACL-ELTVWDHDKLSSN 111

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 19/126 (15%)

Query: 262 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 321
           +++V+A+ L      G SDPY  L       +  K++TI + LNP W+E FE  V     
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 322 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD------VWLKLVKDLDVQRDTKYR 375
             +   ++D   +   +L G A ++   L+P +  D      +WL    DLD Q      
Sbjct: 65  LWISATVWDRSFVGKHDLCGRASLK---LDPKRFGDDGLPREIWL----DLDTQ------ 111

Query: 376 GQVHLE 381
           G++ L 
Sbjct: 112 GRLLLR 117

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNEHFEFI 315
           G L V +++AK L   D+ G SDPY  + +    ++ KK KT      LNP +NE F F 
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 316 VEDESTQ--HLVVRIYDDEGIQSSELIG 341
           V  E  Q  HL+V + D + I  ++ IG
Sbjct: 75  VPFEQIQKVHLIVTVLDYDRIGKNDPIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 59.6 bits (145), Expect = 5e-11
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 262 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 321
           + LV+ K L   D  G SDPY V F   L  +  KSK  +  LNP W E F+  + D+ +
Sbjct: 4   IVLVEGKNLPPMDDNGLSDPY-VKF--RLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQS 60

Query: 322 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
           Q L + ++D +  +  E IG  ++ L  L   +   + L+L
Sbjct: 61  QILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL 101

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 446 LSVTVILAENLP--ASDLMGKADPYVVLTM----KKSETRNKTRVVNDC-LNPIWNQTFD 498
           L++ +I  + LP    D     DPYV + +         + KT+VV +   NP+WN+TF+
Sbjct: 4   LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63

Query: 499 FVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTR 533
           F V       L   V+D D+   D++G+  L L  
Sbjct: 64  FDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDS 98

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 8/87 (9%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVL----TMKKSETRNKTRVVNDCLNPIWNQTFDFV- 500
           L  T+I A+ L A D  G +DPYV L       K+ T+ +T+ V+   NP +N+T  +  
Sbjct: 17  LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKA-TKLRTKTVHKTRNPEFNETLTYYG 75

Query: 501 --VEDGLHDMLIAEVWDHDTFGKDYMG 525
              ED     L   V D D FG D++G
Sbjct: 76  ITEEDIQRKTLRLLVLDEDRFGNDFLG 102

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINND--LNPIWNEHFEFIV 316
           TLE+ ++ A+ L N +L GK   YAV+++ P     K+S  ++ D   NP WNE   F +
Sbjct: 1   TLEITIISAEDLKNVNLFGKMKVYAVVWIDP---SHKQSTPVDRDGGTNPTWNETLRFPL 57

Query: 317 EDESTQH----LVVRIYDDEGIQSSELIGCAQVRLCEL 350
           ++   Q     L + +Y +      +LIG  +V L +L
Sbjct: 58  DERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDL 95

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 314
           K +G L VKL+QA+ L  +D  G +DPY  + + P    TK+SK     LNP ++E F F
Sbjct: 13  KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVF 72

Query: 315 IV--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
            V  ++   + L V +YD +     E IG  ++ L E++  +  D+W K+
Sbjct: 73  EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 6/139 (4%)

Query: 254  LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFE 313
            ++  G L + L   + L + D  G SDP+  LF+    +   K+K +   LNP+WNE F 
Sbjct: 1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNE--KSVYKTKVVKKTLNPVWNEEFT 1093

Query: 314  FIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTK 373
              V +     L + + D +  + ++L+G A++ L +LEPG   +  +     LD +    
Sbjct: 1094 IEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIP----LDGKTFIV 1149

Query: 374  YRGQVHLELLYCPFGMENV 392
              G +H    +      NV
Sbjct: 1150 LDGTLHPGFNFRSKYALNV 1168

Length = 1227

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLNPIWNEH 311
           L   G L + +++A+ L   D+ G SDPY    L       K KK+    N LNP +NE 
Sbjct: 10  LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEA 69

Query: 312 FEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363
             F V  E+  +  L++ + D + +  +ELIG  +V       G+ ++ W +++
Sbjct: 70  LVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVG--PNADGQGREHWNEML 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 22/130 (16%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
           +S+TV+ A+ L A D  G +DPYV  T++  +T+ +T+ +   LNP+WN+ F F   +  
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYV--TVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS- 59

Query: 506 HDMLIAEVWDHD---------TFGK---DYMGRCILTLTRVILEGEYTDCFELD-----G 548
            D +   VWD D          F +   D++G+ I+ +    L GE    + L+      
Sbjct: 60  SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVR--TLSGEMDVWYNLEKRTDKS 117

Query: 549 TKSGKLKLHL 558
             SG ++LH+
Sbjct: 118 AVSGAIRLHI 127

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 16/101 (15%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTM-----KKSETR--NKTRVVNDCLNPIWNQTFD 498
           L+V +I A +LPA D+ G +DPYV + +     KK ET+   KT      LNP++N+TF 
Sbjct: 18  LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKT------LNPVFNETFT 71

Query: 499 F-VVEDGLHD-MLIAEVWDHDTFGK-DYMGRCILTLTRVIL 536
           F V    L +  L+  V+D D F K D +G   + L  V L
Sbjct: 72  FKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDL 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 7/79 (8%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK-SKTINNDLNPIWNEHFEFIVED 318
           + + +V A+GL  KD  G SDPY  + V     KTKK +KTI  +LNP+WNE F F   +
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQV----GKTKKRTKTIPQNLNPVWNEKFHFECHN 58

Query: 319 ESTQHLVVRIYD-DEGIQS 336
            S+  + VR++D D+ I+S
Sbjct: 59  -SSDRIKVRVWDEDDDIKS 76

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK-KSKTINNDLNPIWNEHFEFIV 316
           G L + + +A  L N + +GK DPY  + V       K ++ TI+N LNP+W+E     V
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN---GIVKGRTVTISNTLNPVWDEVLYVPV 57

Query: 317 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 350
                Q + + + D E +     +G  ++ + +L
Sbjct: 58  TSP-NQKITLEVMDYEKVGKDRSLGSVEINVSDL 90

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
           L + +    NL A D  G +DPYV       +T  K++ +   LNP+W++ F   +ED +
Sbjct: 2   LDIHLKEGRNLAARDRGGTSDPYVKFKYG-GKTVYKSKTIYKNLNPVWDEKFTLPIED-V 59

Query: 506 HDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE 537
              L  +V+D+D     D+MG   + L+ + L 
Sbjct: 60  TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELN 92

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVV-NDCLNPIWNQTFDF-VV 501
           G L V V+ A NLP    + K DPY VL +       KT+       +P W++   F + 
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRI--GGVTKKTKTDFRGGQHPEWDEELRFEIT 58

Query: 502 EDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFEL--DGTKSGKLKLHLK 559
           ED    + +  V+D D    D +G   + L+  + EGE+ D +EL   G  +G++ L L 
Sbjct: 59  EDKKPILKV-AVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT 117

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 444 GVLSVTVILAENLPASDL-MGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQT-FDFV 500
           GVL VT+  A +LP +D   G +DPYV  +  K  +    TR++   LNP+W +T F  V
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60

Query: 501 VEDGL--HDMLIAEVWDHDTFGKD 522
             D +   + L   +WD D F  D
Sbjct: 61  TPDEVKAGERLSCRLWDSDRFTAD 84

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 449 TVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLH-- 506
            V+  +NLP   L GK D    +T +    + KTRV+ + LNP+WN+TF++ +       
Sbjct: 1   LVVSLKNLPG--LKGKGDRIAKVTFR--GVKKKTRVLENELNPVWNETFEWPLAGSPDPD 56

Query: 507 DMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGE 539
           + L   V D++  G++  +G   ++L  ++ EG 
Sbjct: 57  ESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGL 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
           L V++V A+ L  KD  G S  Y  L       + K+++T   DLNP+WNE   F V D 
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVEL---DFDGQKKRTRTKPKDLNPVWNEKLVFNVSDP 58

Query: 320 S---TQHLVVRIYDDE 332
           S      L V +Y+D 
Sbjct: 59  SRLSNLVLEVYVYNDR 74

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG- 504
           L V V+ A++L   D  G +  YV L       + +TR     LNP+WN+   F V D  
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVEL--DFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPS 59

Query: 505 --LHDMLIAEVWDH--DTFGKDYMGRCILTLTRVILEGE 539
              + +L   V++       + ++GR  ++ T  +   E
Sbjct: 60  RLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSE 98

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 8/96 (8%)

Query: 257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 316
           +G L+V++V+   L  +D    SDPY VL    L  +  K++ I  +LNP+WNE     V
Sbjct: 1   LGLLKVRVVRGTNLAVRDFTS-SDPYVVL---TLGNQKVKTRVIKKNLNPVWNEELTLSV 56

Query: 317 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP 352
            +     L + ++D +     + +G A++   +LEP
Sbjct: 57  PNPMAP-LKLEVFDKDTFSKDDSMGEAEI---DLEP 88

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 6/104 (5%)

Query: 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEF-- 314
            L   +++AKGL   D  G SDPY  L + P   K  K  +KT++   NP +NE   +  
Sbjct: 16  ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYG 75

Query: 315 IVEDE-STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 357
           I E++   + L + + D++    ++ +G  ++ L +L+P + K 
Sbjct: 76  ITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQ 118

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 6/90 (6%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQT--FD 498
           G L++T+I A NL A D+ G +DPYV   ++   +   + KT V  + LNP +N+   FD
Sbjct: 14  GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73

Query: 499 FVVEDGLHDMLIAEVWDHDTFG-KDYMGRC 527
              E+  +  LI  V D+D  G  + +G C
Sbjct: 74  VPPENVDNVSLIIAVVDYDRVGHNELIGVC 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 8/108 (7%)

Query: 445 VLSVTVILAENLPASDLMGKADPYVVLTM-KKSETRNKTRVVNDCLNPIWNQTFDFVVED 503
           +L V +  A+NLP +    +  PYV LT+ K ++   K++V     NP+W + F F+V +
Sbjct: 1   LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQ---KSKVKERTNNPVWEEGFTFLVRN 57

Query: 504 GLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTD--CFELDGT 549
             +  L  EV D  T     +G   L L+ ++ E + T    F LD +
Sbjct: 58  PENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG 504
           V  V V  AE L   D  G ADPYV+  +K      ++ V  D L+P ++    F  +  
Sbjct: 4   VTQVHVHSAEGLSKQDSGGGADPYVI--IKCEGESVRSPVQKDTLSPEFDTQAIFYRKK- 60

Query: 505 LHDMLIAEVWDHDTFGKDYMGRCILT 530
               +  +VW+ +    +++G+  L+
Sbjct: 61  PRSPIKIQVWNSNLLCDEFLGQATLS 86

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 14/87 (16%)

Query: 453 AENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDF---VVEDGLHDM 508
           A +L A+D  G +DP+  V  + +S+    T V+ + L+P W+QT  F    +     ++
Sbjct: 10  ARDLLAADKSGLSDPFARVSFLNQSQE---TEVIKETLSPTWDQTLIFDEVELYGSPEEI 66

Query: 509 L------IAEVWDHDTFGKD-YMGRCI 528
                  + E++D D+ GKD ++GR +
Sbjct: 67  AQNPPLVVVELFDQDSVGKDEFLGRSV 93

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDF-VV 501
              L+VTV+ A  L   D     D YV +     E R  T V+ +  NP WN TFDF  V
Sbjct: 27  LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKR--TEVIWNNNNPRWNATFDFGSV 83

Query: 502 EDGLHDMLIAEVWDHD-TFGKDYMGRCILTLTR 533
           E      L  EVWD D  +  D +G C +    
Sbjct: 84  ELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEA 116

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 14/104 (13%)

Query: 453 AENLPASDLMGKADPYVVLTMKKSETRN-----KTRVVNDCLNPIWNQTFDFVVED---G 504
            + L   D  GK+DP++ +  ++SE        +T V+ + LNP+W   F   ++    G
Sbjct: 9   GKKLDKKDFFGKSDPFLEI-SRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNG 66

Query: 505 LHDM-LIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 546
            +D  +  EV+D+D+ GK D +G    TL  ++        FEL
Sbjct: 67  DYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLE--FEL 108

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 12/124 (9%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
           L   V+ A +L   D  G +DP+V +     +T   + V   C  P WN+ F+F + +G 
Sbjct: 2   LRCHVLEARDLAPKDRNGTSDPFVRVFYN-GQTLETSVVKKSCY-PRWNEVFEFELMEGA 59

Query: 506 HDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL---------DGTKSGKLK 555
              L  EVWD D   K D++G+ + ++  +    +    F L          G   G L+
Sbjct: 60  DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLR 119

Query: 556 LHLK 559
           L ++
Sbjct: 120 LKVR 123

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDF-VVE 502
           GVL + +  A +L   + +GK DPYV + +     + +T  +++ LNP+W++     V  
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKIDPYVRV-LVNGIVKGRTVTISNTLNPVWDEVLYVPVTS 59

Query: 503 DGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLK 559
                 L  EV D++  GKD  +G   + ++ +I + E    +     +  +LK  L 
Sbjct: 60  PNQKITL--EVMDYEKVGKDRSLGSVEINVSDLIKKNE-DGKYVEYDDEEERLKRLLS 114

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRN-----KTRVVNDCLNPIWNQTFDF 499
            L V ++ A NL   D  G +DP+V + +            KT+V    L P+++++F+F
Sbjct: 17  SLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEF 76

Query: 500 VV--EDGLHD--MLIAEVWDHDTFGK-DYMGRCILTLTRV 534
            V  E    +  +L+  V D+D  G  D+ G   L L  +
Sbjct: 77  NVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 9/104 (8%)

Query: 445 VLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDF-- 499
            L++ ++ A  LPA D  G +DP+V   +L  KK +   K +  N  LNP WN+TF F  
Sbjct: 17  TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKN--LNPHWNETFLFEG 74

Query: 500 VVEDGLHDM-LIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYT 541
              + L    L  +V D+D F + D +G   L L +V L  E T
Sbjct: 75  FPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQT 118

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 53.7 bits (130), Expect = 4e-09
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
           L V L  AK L       +  PY  L V    + T+KSK      NP+W E F F+V + 
Sbjct: 2   LFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNP 58

Query: 320 STQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLKL 362
             Q L + + DD+  +S   +G   + L EL  EP    D    L
Sbjct: 59  ENQELEIEVKDDKTGKS---LGSLTLPLSELLKEPDLTLDQPFPL 100

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE------KTKKSKTINNDLNPIWNEHFE 313
           L V+++ A+ L   D  G SDP+    V  LP        T K++     L P+++E FE
Sbjct: 18  LRVEILNARNLLPLDSNGSSDPFVK--VELLPRHLFPDVPTPKTQVKKKTLFPLFDESFE 75

Query: 314 FIVEDESTQH----LVVRIYDDEGIQSSELIGCAQVRL 347
           F V  E        L+  + D + + S++  G A + L
Sbjct: 76  FNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL 113

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 265 VQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKT--INNDLNPIWNEHFEFIVEDES 320
           +  + L +KD++ KSDP+ V++V+        +  +T  I N+LNP +   F      E 
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66

Query: 321 TQHLVVRIYDDEG----IQSSELIGCAQVRLCEL 350
            Q L   +YD +     +   + +G A+  L E+
Sbjct: 67  VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETR---NKTRVVNDCLNPIWNQTFDFVVE 502
           L+V V+ A +LP  D+ G ADPYV + +   + R    KT V    LNP++N++F F + 
Sbjct: 17  LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76

Query: 503 DGLHDMLIAE--VWDHDTFGK-DYMGRCIL 529
               + +  E  V D D   K + +GR +L
Sbjct: 77  SEELEDISVEFLVLDSDRVTKNEVIGRLVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 6/109 (5%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 315
             L V++ +AK L   D  G SDPY  L + P P+    +K+KTI   LNP+WNE F F 
Sbjct: 13  NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD 72

Query: 316 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
           +   D+  + L + ++D +    ++ +G     + EL      D W KL
Sbjct: 73  LKPADKDRR-LSIEVWDWDRTTRNDFMGSLSFGVSELIK-MPVDGWYKL 119

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 262 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK---KSKTINNDLNPIWNEHFEFIVED 318
           V +V+A+ L  KD  GKSDPY  + +     K K   +   I N LNP++ + FE     
Sbjct: 4   VYVVRARNLQPKDPNGKSDPYLKIKLG----KKKINDRDNYIPNTLNPVFGKMFELEATL 59

Query: 319 ESTQHLVVRIYDDEGIQSSELIG 341
                L + + D + + S +LIG
Sbjct: 60  PGNSILKISVMDYDLLGSDDLIG 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 259 TLEVKLVQAKGLTNKDLIGKS--DPYAVLFVRPLP---EKTKKSKTI-NNDLNPIWNEHF 312
           TL +K++  + L        S  DPY  + +  LP       K+K + NN  NP+WNE F
Sbjct: 3   TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62

Query: 313 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
           EF V       L   +YD++     + +G A + L  L  G
Sbjct: 63  EFDVTVPELAFLRFVVYDEDSG-DDDFLGQACLPLDSLRQG 102

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
           + +TV+ A+ L   DL    DP+ V+T+   +T   T V    L+P WN+ FD  V    
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTH-STDVAKKTLDPKWNEHFDLTVGP-- 58

Query: 506 HDMLIAEVWDHDTFGK 521
             ++  +V+D   F K
Sbjct: 59  SSIITIQVFDQKKFKK 74

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 318
           TL +K+++A  L  KD  G SDP+  +++ P  +   ++K    +LNP WNE F F  E 
Sbjct: 17  TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF--EG 74

Query: 319 ESTQHLVVRI-----YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
              + L  R+      D +    ++ IG   + L +++  + +  W  L
Sbjct: 75  FPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
           + + ++ A GL  +DL    DP+AV+ V     +T  +      L+P WNEHF+  V   
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDG--GQTHSTDVAKKTLDPKWNEHFDLTVGPS 59

Query: 320 STQHLVVRIYDDEGIQ--SSELIGCAQVR 346
           S   + ++++D +  +      +GC ++R
Sbjct: 60  SI--ITIQVFDQKKFKKKDQGFLGCVRIR 86

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVL---------FVRPLPEKTKKSKTINNDLNPIWNE 310
           L VK++    L  KD+ G SDPY  +          +  +  KT K KT    LNP WNE
Sbjct: 2   LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIK-KT----LNPKWNE 56

Query: 311 HFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
            F F V +     L+  ++D+  +   + +G  +V L  L   
Sbjct: 57  EFFFRV-NPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTE 98

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 318
           +L +++V+ K L  KD+ G SDPY +  V+   E   ++ T+   LNP W E  E+ V  
Sbjct: 1   SLYIRIVEGKNLPAKDITGSSDPYCI--VKVDNEVIIRTATVWKTLNPFWGE--EYTVHL 56

Query: 319 ESTQH-LVVRIYDDEGIQSSELIG--CAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR 375
               H +   + D++ +   ++IG       +    P  + D W+ L +   V  D + +
Sbjct: 57  PPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGI-DGWMNLTE---VDPDEEVQ 112

Query: 376 GQVHLEL 382
           G++HLEL
Sbjct: 113 GEIHLEL 119

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 259 TLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF-IV 316
            L V L++A+ L  +       DP+  + + P   ++ +SK      NP ++E F F + 
Sbjct: 15  QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVS 74

Query: 317 EDESTQH-LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 364
             E  +  L + +YD +      +IG     L +L+  K   VW  L  
Sbjct: 75  FKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 50.9 bits (122), Expect = 9e-08
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNEHFEFI 315
             + V +++A+ L   D+ G SDPY  +++    ++ +K KT+     LNP++NE F F 
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 316 VEDESTQH--LVVRIYDDEGIQSSELIG 341
           +  E  +   L++ + D + +  ++LIG
Sbjct: 75  IPLERLRETTLIITVMDKDRLSRNDLIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 267 AKGLTNKDLIGKSDPYAVLFVRPLPEKTK----KSKTINNDLNPIWNEHFEFIVED---- 318
            K L  KD  GKSDP+  +  R   + T     +++ I N LNP+W   F   ++     
Sbjct: 9   GKKLDKKDFFGKSDPFLEIS-RQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCNG 66

Query: 319 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 357
           +  + + + +YD +     +LIG  +  L EL      +
Sbjct: 67  DYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLE 105

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 14/113 (12%)

Query: 453 AENLPASDLMGKADPYVVLTMKKSETRN-----KTRVVNDCLNPIWNQTFDFVVEDGLHD 507
             NL   D++ K+DP+VV+ +K   +       +T V+ + LNP +  T  F V+    +
Sbjct: 9   CRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTT--FTVDYYFEE 66

Query: 508 M--LIAEVWDHDTFGK-----DYMGRCILTLTRVILEGEYTDCFELDGTKSGK 553
           +  L  EV+D D+  K     D++G    TL  ++          L G K   
Sbjct: 67  VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKGGKGKG 119

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRN-----KTRVVNDCLNPIWNQTFDF 499
           +L V V+   +L   D+ G +DPYV +++   +        +T+ +   LNP WN+ F F
Sbjct: 1   ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Query: 500 VVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDC 543
            V    H +L  EV+D +   +D ++G+  + L  +  E    + 
Sbjct: 61  RVNPREHRLLF-EVFDENRLTRDDFLGQVEVPLNNLPTETPGNER 104

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLP-EKTKKSKTINNDLNPIWNEH 311
           L   G L V +++AK L   D+   SDP+  +  V  L   KTKK+  +   ++P +NE 
Sbjct: 10  LPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNES 69

Query: 312 FEFIVEDESTQH--LVVRIYDDEGIQSSELIG 341
           F F V  E  ++  LV  +Y      S++ IG
Sbjct: 70  FSFKVPQEELENVSLVFTVYGHNVKSSNDFIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 13/113 (11%)

Query: 444 GVLSVTVILAENLPASD-LMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDF 499
           G L V +    NL  +D    +++PYV   +L  K  +++ KT V  +  NP++N+T  +
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY 73

Query: 500 VVEDGLHDMLIAE-----VWDHDTFG-KDYMGRCILTLTRVILEGEYTDCFEL 546
            +       L        VW HD FG   ++G   + L    L+ + ++ + L
Sbjct: 74  HIS---KSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 16/115 (13%)

Query: 443 RGVLSVTVILAENLPASDLMGKA-DPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFD 498
            G L V V+ A+NLP  D  G   DPYV   +    +  T+ KT+VV    NP +N+   
Sbjct: 12  NGTLFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEM-- 67

Query: 499 FVVEDGLHDMLIAE------VWDHDTFG-KDYMGRCILTLTRVILEGEYTDCFEL 546
            +V DGL    + +      VW HD+    +++G   + L ++ L  E    + L
Sbjct: 68  -LVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 249 YSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT----KKSKTINNDL 304
           YS    K    L V + + + L   D     DPY  L++  LP+K+    +K+    ++L
Sbjct: 11  YSSQRQK----LIVTVHKCRNLPPCDSSDIPDPYVRLYL--LPDKSKSTRRKTSVKKDNL 64

Query: 305 NPIWNEHFEFIV--EDESTQHLVVRIYDDEGIQSSE--LIGCAQVRLCELEPGK 354
           NP+++E FEF V  E+   + L V + + +   S E  L+G   + L +L+  K
Sbjct: 65  NPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK 118

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKS-DPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHF-- 312
           GTL V ++ AK L   D  G   DPY   ++ P P+KT K KT  +    NP +NE    
Sbjct: 13  GTLFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVY 70

Query: 313 -EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
               VED   + L V ++  + +  +E +G   + L +L+  +  + W  L
Sbjct: 71  DGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 446 LSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWN-QTFDFVVED 503
           L V V+ A +LP  D      D +V +    +    KT VV   LNP+WN + F F V+D
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTT--YKTDVVKKSLNPVWNSEWFRFEVDD 58

Query: 504 GL--HDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTD 542
                + L   V DHDT+   D +G+  + L  ++L+   + 
Sbjct: 59  EELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQ 100

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
           L +TV  A  L ++    K DPYV +T+     + KT V     NP WN+ F  +V    
Sbjct: 4   LQITVESA-KLKSNSKSFKPDPYVEVTVDGQPPK-KTEVSKKTSNPKWNEHFTVLVTP-- 59

Query: 506 HDMLIAEVWDHDTFGKDYM 524
              L  +VW H T   D +
Sbjct: 60  QSTLEFKVWSHHTLKADVL 78

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI--NNDLNPIWNEHFEFI 315
             L V +++   L   D  G SDP+  L+++P   K  K KT      LNP +NE F + 
Sbjct: 13  RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72

Query: 316 V--EDESTQHLVVRIYDDEGIQSSELIG 341
           +   D + + L + ++D +  +S++ IG
Sbjct: 73  IKHSDLAKKTLEITVWDKDIGKSNDYIG 100

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
           L++ +  AK L +     K DPY  + V   P   KK++      NP WNEHF  +V  +
Sbjct: 4   LQITVESAK-LKSNSKSFKPDPYVEVTVDGQP--PKKTEVSKKTSNPKWNEHFTVLVTPQ 60

Query: 320 STQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKL 362
           ST     +++    +++  L+G A + L ++     GK+++V L L
Sbjct: 61  STLEF--KVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTL 104

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
           L VTVI A++L  SD     + +V   +     R +     +  NP WN+   FV  +  
Sbjct: 2   LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRN-GNPSWNEELMFVAAEPF 60

Query: 506 HDMLIAEVWDHDTFGKD-YMGRCILTLTRV 534
            D LI  V D     KD  +GR ++ L  +
Sbjct: 61  EDHLILSVEDRVGPNKDEPLGRAVIPLNDI 90

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSK----TINNDLNPIWNEHFE 313
             L V ++QA+ L  +D     +PY  +++  LP++++KSK    T+   LNP WN+ FE
Sbjct: 16  SQLIVTVLQARDLPPRDDGSLRNPYVKVYL--LPDRSEKSKRRTKTVKKTLNPEWNQTFE 73

Query: 314 F 314
           +
Sbjct: 74  Y 74

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 22/126 (17%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPEKTKKSKTINNDLNPIWNEH--FEFIV 316
           L   + QA+ L   D  G SDP+A V F+     ++++++ I   L+P W++   F+ + 
Sbjct: 3   LRAYIYQARDLLAADKSGLSDPFARVSFL----NQSQETEVIKETLSPTWDQTLIFDEVE 58

Query: 317 EDESTQHL-------VVRIYDDEGIQSSELIGCAQVR------LCELEPGKVKDVWLKLV 363
              S + +       VV ++D + +   E +G +  +      L E  P K++  W  + 
Sbjct: 59  LYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQ--WFPIY 116

Query: 364 KDLDVQ 369
           K     
Sbjct: 117 KGGQSA 122

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 26/93 (27%), Positives = 54/93 (58%), Gaps = 8/93 (8%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDF 499
           G L+V +I A+ L  +D+   +DP+V + +    K  +T+ KT  +   ++P +N++F F
Sbjct: 14  GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTK-KTSCMRGTIDPFYNESFSF 72

Query: 500 -VVEDGLHDM-LIAEVWDHDTFGK-DYMGRCIL 529
            V ++ L ++ L+  V+ H+     D++GR ++
Sbjct: 73  KVPQEELENVSLVFTVYGHNVKSSNDFIGRIVI 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 26/130 (20%)

Query: 443 RGVLSVTVILAENLPASDL-MGKADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDF- 499
           +  L V +I   +LPA D   G +DPYV L  + + E + KTRV+    NP++++TF F 
Sbjct: 15  KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFY 74

Query: 500 ------VVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDCFELDGTKSG 552
                 + +  LH  +++     D + +D  +G  +  L               D    G
Sbjct: 75  GIPYNQLQDLSLHFAVLS----FDRYSRDDVIGEVVCPLA------------GADLLNEG 118

Query: 553 KLKLHLKWMP 562
           +L +  +  P
Sbjct: 119 ELLVSREIQP 128

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 268 KGL-TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV 326
           KGL T++   G   PYA L++    +    ++      NP WN   EF+V D     + V
Sbjct: 1   KGLDTSESKTGLLSPYAELYLNG--KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTV 58

Query: 327 RIYDDEGIQSSELIGCAQVRLCEL 350
            + DD   +   ++G   + L +L
Sbjct: 59  VVKDD-RDRHDPVLGSVSISLNDL 81

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 59/289 (20%), Positives = 95/289 (32%), Gaps = 58/289 (20%)

Query: 235 TWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTN-KDLIGKSDPYAVLFVRPLPEK 293
            +PV +    L G    LE    G L+V L + K L             A L+     ++
Sbjct: 556 FFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNK--SAELYTNA--KE 611

Query: 294 TKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
              +  +    +P WN  +  +V D     + V  +D    QS ++I      L +L   
Sbjct: 612 VYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDV---QSGKVIATEGSTLPDL--- 665

Query: 354 KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNG 413
                       +D   DT                   VF                  N 
Sbjct: 666 ------------IDRTLDTFL-----------------VFPLR---------------NP 681

Query: 414 EKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM 473
           +  +    N  + I     +S K       G + V+V  A +L      GK+DPY    +
Sbjct: 682 KGRIF-ITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYAT-VL 739

Query: 474 KKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD 522
             +  + +T   +  LNPIWN+   +V     +  L  E  D++  G D
Sbjct: 740 VNNLVKYRTIYGSSTLNPIWNE-ILYVPVTSKNQRLTLECMDYEESGDD 787

Length = 1227

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 9/130 (6%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
           L V +++A+ L   D     + +    +     +T+ S+T N   NP WNE   F+  + 
Sbjct: 2   LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNG--NPSWNEELMFVAAEP 59

Query: 320 STQHLVVRIYDDEGIQSSELIGCAQVRLCELE----PGKVKDVWLKLVKDLDVQRD---T 372
              HL++ + D  G    E +G A + L ++E       V   W  L +           
Sbjct: 60  FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKR 119

Query: 373 KYRGQVHLEL 382
           K+  ++HL L
Sbjct: 120 KFASRIHLRL 129

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVR-PLPEKTKKSKTINNDLNPIWNEHFEFIVED 318
           L V++++ + L  K   G  DP+A + +       TK++K      NP ++E F F +  
Sbjct: 1   LSVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59

Query: 319 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 364
             +        ++E ++ SEL    +V L         D +L  V+
Sbjct: 60  GFSYEKKSFKVEEEDLEKSEL----RVELWHASMV-SGDDFLGEVR 100

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 259 TLEVKLVQAKGL-TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 317
           +L++K+ +AK L          D Y    V    E+  ++KT+   L P + E F F + 
Sbjct: 1   SLKIKIGEAKNLPPRSGPNKMRDCYCT--VNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP 58

Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ 377
             + +HL   IYD + ++   +IG   ++  +L     KD W  L     V  D++ +G+
Sbjct: 59  -RTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQP---VDADSEVQGK 114

Query: 378 VHLEL 382
           VHLEL
Sbjct: 115 VHLEL 119

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 316
           +G L V +V+ + L   +  GKSDPY  +    +  +  K+K +++ LNP WN   +F V
Sbjct: 14  IGRLMVVIVEGRDLKPCNSNGKSDPYCEV---SMGSQEHKTKVVSDTLNPKWNSSMQFFV 70

Query: 317 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 350
           +D     L + ++D +     + +G  ++R+ ++
Sbjct: 71  KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADI 104

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDC-LNPIWNQTFDFVVEDG 504
           L +T+I AE+L   +L GK   Y V+ +     +  T V  D   NP WN+T  F +++ 
Sbjct: 2   LEITIISAEDLKNVNLFGKMKVYAVVWI-DPSHKQSTPVDRDGGTNPTWNETLRFPLDER 60

Query: 505 L----HDMLIAEVWDHDTFGKD 522
           L       L  EV+       D
Sbjct: 61  LLQQGRLALTIEVYCERPSLGD 82

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 318
            L   +++A+ L  KD  G SDP+  +F      +T ++  +     P WNE FEF + +
Sbjct: 1   RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELME 57

Query: 319 ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 376
            +   L V ++D + +  ++ +G     +  L+  K ++ W +L+   D + + +  G
Sbjct: 58  GADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLP--DPRAEEESGG 113

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 48.9 bits (117), Expect = 7e-06
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 14/116 (12%)

Query: 444  GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE- 502
            G L+VT+    NL  S  MG  + +  LT+     R +T+VV+   +P W + F +  + 
Sbjct: 1980 GSLTVTIKRGNNLKQS--MGNTNAFCKLTLGNGPPR-QTKVVSHSSSPEWKEGFTWAFDS 2036

Query: 503  ----DGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFEL--DGTKSG 552
                  LH  +  +    +TFGK  +G+  + + RV++EG Y+  + L  +  K G
Sbjct: 2037 PPKGQKLH--ISCK--SKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDG 2088

Length = 2102

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
           L V V+ A  LPA       DP V + +     +  T+ +    NP WNQ F F  +   
Sbjct: 2   LYVRVVKARGLPA----NSNDPVVEVKL--GNYKGSTKAIERTSNPEWNQVFAFSKDRLQ 55

Query: 506 HDMLIAEVWDHDTFGKDYMGRC 527
              L   VWD D    D++G  
Sbjct: 56  GSTLEVSVWDKDKAKDDFLGGV 77

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 13/128 (10%)

Query: 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF--IV 316
           +L +++++AK L +K   G  DPY  + +     +  ++KT+   LNP W E F F    
Sbjct: 1   SLRLRILEAKNLPSK---GTRDPYCTVSLDQ--VEVARTKTVE-KLNPFWGEEFVFDDPP 54

Query: 317 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 376
            D +   L     D        +IG  +V L +L+ G+ KD W  L     V  D++ +G
Sbjct: 55  PDVTFFTLSFYNKDKRSKDRDIVIG--KVALSKLDLGQGKDEWFPLTP---VDPDSEVQG 109

Query: 377 QVHLELLY 384
            V L   Y
Sbjct: 110 SVRLRARY 117

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 13/113 (11%)

Query: 244 ILPGDYSELELKPV--GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSK--- 298
           + P     L+ K    G L V + +AK L      G SD +   ++  LP+K+KKSK   
Sbjct: 11  VPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYL--LPDKSKKSKQKT 68

Query: 299 -TINNDLNPIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRL 347
             +   +NP+WN  F +     ED S   L + ++D + + S++ +G   VRL
Sbjct: 69  PVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGG--VRL 119

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
           L VK ++A GL+     G S+PY VL +   P+K + S   N   NP W+EHF F +   
Sbjct: 1   LLVKNIKANGLSEA--AGSSNPYCVLEMDEPPQKYQSSTQKNTS-NPFWDEHFLFELSPN 57

Query: 320 STQHLVVRIYDDEGIQSSELIGCAQVRLCELE 351
           S + L+  +YD+     S+ +G A V   EL 
Sbjct: 58  SKE-LLFEVYDNGKKSDSKFLGLAIVPFDELR 88

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 315
             L V +++A+ L   D+ G +DPY  + +    ++  K KT      LNP++NE F F 
Sbjct: 15  NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD 74

Query: 316 VEDESTQHLVVRI--YDDEGIQSSELIG 341
           +  E  + + V     D + +  +E+IG
Sbjct: 75  IPSEELEDISVEFLVLDSDRVTKNEVIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
           L + ++  +NLPA D+ G +DPY ++ +  +E   +T  V   LNP W + +   +  G 
Sbjct: 2   LYIRIVEGKNLPAKDITGSSDPYCIVKV-DNEVIIRTATVWKTLNPFWGEEYTVHLPPGF 60

Query: 506 HDMLIAEVWDHDTFGK-DYMGRCILT 530
           H +    V D DT  + D +G+  LT
Sbjct: 61  HTVSFY-VLDEDTLSRDDVIGKVSLT 85

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 2/106 (1%)

Query: 458 ASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD 517
           +    G   PY  L +        TRV     NP WN + +F+V D     +   V D  
Sbjct: 6   SESKTGLLSPYAELYLNGKLVY-TTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDR 64

Query: 518 TFGKDYMGRCILTLTRVILEGEY-TDCFELDGTKSGKLKLHLKWMP 562
                 +G   ++L  +I         F L G   G++++   W P
Sbjct: 65  DRHDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRIRISALWKP 110

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 12/102 (11%)

Query: 444 GVLSVTVILAENLPASDLMGKA----DPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDF 499
           GV+ + +    +LP    M +     DP+V+++  +   R  T      LNP++N+   F
Sbjct: 1   GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFR--TSWRRHTLNPVFNERLAF 58

Query: 500 VVEDGLHDM---LIAEVWDHDTF-GKDYMGRCILTLTRVILE 537
            V    H+    +  +V D D F   DY+    L++  ++  
Sbjct: 59  EV--YPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNA 98

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 7/65 (10%)

Query: 258 GTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTK--KSKTI--NNDLNPIWNEHF 312
           G+LEV + + + L   D    +S+PY  +++  LP+K+K  K KT    N  NP++NE  
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYL--LPDKSKQSKRKTSVKKNTTNPVFNETL 71

Query: 313 EFIVE 317
           ++ + 
Sbjct: 72  KYHIS 76

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 444 GVLSVTVILAENLPASDLMGKADPY--VVLTMKKSETRNKTRVVNDCLNPIWNQTFDF-V 500
           G+L+V +I A NL   D  G ADPY  V L   +S T+ ++++    LNP ++++F F V
Sbjct: 16  GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTK-QSKIHKKTLNPEFDESFVFEV 74

Query: 501 VEDGLHD-MLIAEVWDHDTFGKDYMGRCI 528
               L    L   ++D D F +D    CI
Sbjct: 75  PPQELPKRTLEVLLYDFDQFSRD---ECI 100

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 38/138 (27%)

Query: 258 GTLEVKLVQAKGLTNKDL------------------------------IGKSDPYAVLFV 287
           GTL+V + +A  L N D+                                 SDPYA + +
Sbjct: 7   GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL 66

Query: 288 RPLPEKTKKSKT--INNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQV 345
                  + ++T  I N  NP+WNE F       ++ H+   + D++ +  ++LIG A +
Sbjct: 67  ----AGARVARTRVIENSENPVWNESFHIYCAHYAS-HVEFTVKDNDVV-GAQLIGRAYI 120

Query: 346 RLCELEPGKVKDVWLKLV 363
            + +L  G+  + WL ++
Sbjct: 121 PVEDLLSGEPVEGWLPIL 138

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 12/81 (14%)

Query: 258 GTLEVKLVQAKGLTNKDL-IGKSDPYAVL----FVRPLPEKTKKSKTINNDLNPIWNE-H 311
           G L V + +A  L   D   G SDPY       F +PL      ++ I  DLNP+W E  
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPL----YSTRIIRKDLNPVWEETW 56

Query: 312 FEFIVEDESTQH--LVVRIYD 330
           F  +  DE      L  R++D
Sbjct: 57  FVLVTPDEVKAGERLSCRLWD 77

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 6/83 (7%)

Query: 446 LSVTVILAENLPASDL-MGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV 501
           L V VI  ++L A+D    ++DPYV   +L  K +  + KT V    LNP++N+T  + V
Sbjct: 17  LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKV 76

Query: 502 E--DGLHDMLIAEVWDHDTFGKD 522
           E  +    +L   VW  D+ G++
Sbjct: 77  EREELPTRVLNLSVWHRDSLGRN 99

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 262 VKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDEST 321
           V +  A+GL+ +D  G +DPY ++       ++ +S    + L+P ++    F  +   +
Sbjct: 7   VHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKPRS 63

Query: 322 QHLVVRIYDD 331
             + +++++ 
Sbjct: 64  P-IKIQVWNS 72

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 13/113 (11%)

Query: 444 GVLSVTVILAENLPASD-LMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDF 499
             L+V V    NL   D    +++PYV   +L  K  +++ KT +  +  NP++N+T  +
Sbjct: 15  QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKY 74

Query: 500 VVEDGLHDMLIAE-----VWDHDTFGKD-YMGRCILTLTRVILEGEYTDCFEL 546
            +    H  L        VW +D FG++ ++G   + L     + ++ +C  L
Sbjct: 75  SIS---HSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT-INNDLNPIWNEHFEF--IV 316
           L V +++A+ +  KD  G +  + V  V  LP K +++KT +    NP++NE F F  + 
Sbjct: 18  LTVTVIRAQDIPTKDR-GGASSWQVHLVL-LPSKKQRAKTKVQRGPNPVFNETFTFSRVE 75

Query: 317 EDESTQHLV-VRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
            +E     +  R+Y  E ++   LIG   V L +L       VWL L
Sbjct: 76  PEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 13/105 (12%)

Query: 260 LEVKLVQAKGLT---NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 316
           LEV ++ A+GL     KD  G +D Y V    P   K  +++T+ +  NP WNE + + V
Sbjct: 2   LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP---KWVRTRTVEDSSNPRWNEQYTWPV 58

Query: 317 EDESTQHLVVRIYD------DEGIQSSELIGCAQVRLCELEPGKV 355
            D  T  L V ++D       E +Q   LIG  ++RL  LE  +V
Sbjct: 59  YDPCTV-LTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRV 102

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
           L V  I A  L  +   G ++PY VL M +   + ++    +  NP W++ F F +    
Sbjct: 1   LLVKNIKANGLSEA--AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNS 58

Query: 506 HDMLIAEVWDHD 517
            ++L  EV+D+ 
Sbjct: 59  KELLF-EVYDNG 69

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 10/103 (9%)

Query: 257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF-I 315
           + TL V +++A GL   D    +D Y  +F      + K+++ I N+ NP WN  F+F  
Sbjct: 27  LATLTVTVLRATGL-WGDYFTSTDGYVKVF---FGGQEKRTEVIWNNNNPRWNATFDFGS 82

Query: 316 VEDESTQHLVVRIYDDEGIQSSELIG-CAQVRLCELEPGKVKD 357
           VE      L   ++D +     +L+G C+ V     E G  +D
Sbjct: 83  VELSPGGKLRFEVWDRDNGWDDDLLGTCSVV----PEAGVHED 121

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 21/100 (21%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVV- 501
           LSV V+   +L      G  DP+  +T+    K++T+ +T+V     NP +++ F F + 
Sbjct: 1   LSVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTK-RTKVKKKTNNPRFDEAFYFELT 58

Query: 502 --------------EDGLHDMLIAEVWDHDT-FGKDYMGR 526
                         ED     L  E+W      G D++G 
Sbjct: 59  IGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGE 98

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF- 499
             L++ V+ A+ L +++  G  + YV +++   K+   R KT  V D  NP++++TF F 
Sbjct: 12  RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFD 70

Query: 500 VVEDGLHDMLIAEVW 514
           V E      L+  VW
Sbjct: 71  VNERDYQKRLLVTVW 85

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	569
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	100.0
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.97
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.9
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.88
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.87
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.85
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.84
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.83
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.83
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.82
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.82
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.82
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.82
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.82
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.81
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.81
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.81
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.81
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.81
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.81
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.81
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.81
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.8
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.8
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.8
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.8
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.8
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.8
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.8
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.8
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.8
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.8
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.8
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.79
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.79
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.79
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.79
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.79
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.79
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.78
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.78
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.78
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.78
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.78
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.78
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.78
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.78
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.78
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.78
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.77
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.77
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.77
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.77
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.77
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.76
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.76
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.76
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.76
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.76
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.76
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.76
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.76
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.75
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.75
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.75
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.75
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.75
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.75
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.75
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.74
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.74
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.74
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.74
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.74
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.74
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.74
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.74
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.74
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.74
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.74
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.74
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.74
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.73
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.73
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.73
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.73
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.72
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.72
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.72
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.72
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.72
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.72
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.72
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.72
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.71
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.71
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.71
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.71
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.71
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.71
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.71
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.71
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.71
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.71
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.7
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.7
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.7
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.7
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.7
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.7
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.7
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.7
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.7
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.69
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.68
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.68
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.68
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.68
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.68
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.68
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.67
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.67
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.67
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.67
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.67
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.67
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.67
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.67
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.67
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.67
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.66
PLN03008	868	Phospholipase D delta	99.66
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.66
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.66
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.66
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.65
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.65
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.65
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.65
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.65
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.64
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.64
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.63
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.63
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.63
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.63
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.63
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.63
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.63
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.63
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.63
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.63
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.62
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.62
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.62
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.62
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.62
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.62
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.62
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.62
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.62
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.62
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.61
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.61
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.61
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.61
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.6
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.6
PLN03008	868	Phospholipase D delta	99.6
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.6
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.6
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.6
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.6
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.6
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.6
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.6
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.59
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.59
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.59
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.58
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.58
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.58
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.58
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.58
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.57
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.57
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.55
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.54
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.54
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.53
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.52
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.51
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.49
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.45
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.41
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.38
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.36
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.35
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.32
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.3
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.28
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.27
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.26
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.25
PLN02270	808	phospholipase D alpha	99.22
PLN02270	808	phospholipase D alpha	99.2
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.18
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.18
PLN02223	537	phosphoinositide phospholipase C	99.17
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.17
PF10296	91	DUF2404: Putative integral membrane protein conser	99.13
PLN02952	599	phosphoinositide phospholipase C	99.08
PLN02223	537	phosphoinositide phospholipase C	99.06
PLN02228	567	Phosphoinositide phospholipase C	98.97
PLN02230	598	phosphoinositide phospholipase C 4	98.97
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.95
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.95
PLN02222	581	phosphoinositide phospholipase C 2	98.92
PLN02952	599	phosphoinositide phospholipase C	98.91
PLN02228	567	Phosphoinositide phospholipase C	98.9
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.88
PLN02230	598	phosphoinositide phospholipase C 4	98.86
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.85
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.83
PLN02222	581	phosphoinositide phospholipase C 2	98.81
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.8
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.77
PLN02352	758	phospholipase D epsilon	98.73
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.69
PLN02352	758	phospholipase D epsilon	98.68
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.66
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.65
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.64
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.46
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.39
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.29
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.11
KOG3532	1051	consensus Predicted protein kinase [General functi	98.01
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.97
PLN02964	644	phosphatidylserine decarboxylase	97.85
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.83
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.78
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.75
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.46
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.25
PLN02964	644	phosphatidylserine decarboxylase	97.2
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.15
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.15
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.01
PF15627	156	CEP76-C2: CEP76 C2 domain	96.76
PF15627	156	CEP76-C2: CEP76 C2 domain	96.6
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	96.55
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.69
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	95.45
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.3
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.29
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.11
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	94.79
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	94.5
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	94.49
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	93.98
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	93.82
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	93.72
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	93.52
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	92.98
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	92.92
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	92.88
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	92.68
KOG1452	442	consensus Predicted Rho GTPase-activating protein	92.2
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	92.04
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	91.48
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	91.23
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	90.9
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	88.9
KOG1452	442	consensus Predicted Rho GTPase-activating protein	88.66
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	88.62
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	87.96
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	86.65
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	83.87
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	83.15
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	82.51
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	81.33

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=100.00  E-value=1.4e-60  Score=510.29  Aligned_cols=499  Identities=24%  Similarity=0.378  Sum_probs=404.0

Q ss_pred             cchhhhHHHHHHHH-----------HHHHHhheeeeeeccchhHhhHhhccCHHhhhhccCCCCCCCceecCCCCchhHH
Q 008334            2 SLMMLFFYFVFLIL-----------LLLWLYYYYYYYYCMKATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWL   70 (569)
Q Consensus         2 ~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~~~~~E~~~Wl   70 (569)
                      ++++++|.++|+++           +.+..+++|..+       +.++.+..+++..+.+....+-     .|+|++|||
T Consensus       159 ~i~l~~~v~Swifg~~~fs~~slffii~~~~~vY~~~-------~~rv~rnird~v~~~~~~ek~~-----nd~ESveWL  226 (1227)
T COG5038         159 AIVLIGSVASWIFGYLGFSFASLFFIILVTMYVYRTC-------IKRVRRNIRDLVQQELSEEKLE-----NDYESVEWL  226 (1227)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh-----cchhHHHHH
Confidence            46777888888777           122222222222       2334455566666666555453     789999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCccceEEEEEEecCCCCCeEEEEEEEEc-CCCeEEEEEEEEEec----
Q 008334           71 NHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELEMQWDA----  145 (569)
Q Consensus        71 N~~l~~~W~~~~~~~~~~~~~~~~~~l~~~~p~~i~~i~~~~~~lG~~~P~i~~i~~~~~-~~~~~~le~~~~~~~----  145 (569)
                      |++|+++||.++|.+++.+.+++|+.|.+..|+||+++.+.+||||++||+|.+||.|+. +.|.+.||+++++..    
T Consensus       227 NtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~s  306 (1227)
T COG5038         227 NTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDIS  306 (1227)
T ss_pred             HHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchh
Confidence            999999999999999999999999999999999999999999999999999999999988 679999999999972    


Q ss_pred             -----------CceEEEEEEe--eec-eeeeEEEEEEEEEEEEEEEeecCCCCCCcceEEEEEecccceeeEEEEEcc--
Q 008334          146 -----------NSSIILAIKT--RLG-VALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVG--  209 (569)
Q Consensus       146 -----------~~~i~l~~~~--~~g-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~~f~~~p~ldf~l~~~g--  209 (569)
                                 +++|.|.++.  .+| +++||.|+++.|+|++|++++ |++++|++..+.++|++.|.+||.++++|  
T Consensus       307 D~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~  385 (1227)
T COG5038         307 DVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGD  385 (1227)
T ss_pred             hhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCCC
Confidence                       3557777763  355 789999999999999999999 99999999999999999999999999997  


Q ss_pred             ---ccccCCcchhHHHHHHHHHHHhhhccccceEeeeCCCCCccccccCccEEEEEEEEEeeccccCC--CCCCCCcEEE
Q 008334          210 ---GDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKD--LIGKSDPYAV  284 (569)
Q Consensus       210 ---~~i~~iP~l~~~~~~~i~~~l~~~~~~P~~~~~~l~~~~~~~~~~~~~g~L~V~v~~a~~L~~~d--~~g~~dpyv~  284 (569)
                         .||+.||||+.|++++|...+++|+++|+++.+++..-. ......+.|++.|+|.+|++|...+  ..+..|||+.
T Consensus       386 ~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m-~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit  464 (1227)
T COG5038         386 FFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIM-AGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYIT  464 (1227)
T ss_pred             ccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhh-ccccCCeeEEEEEEEeeccCcccccccccCCCCceEE
Confidence               368899999999999999999999999999999764211 1113478999999999999999888  6788999999


Q ss_pred             EEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCCCceeEE-EEEcc
Q 008334          285 LFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDV-WLKLV  363 (569)
Q Consensus       285 v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~-~~~L~  363 (569)
                      +...  +....||++.+++.||+|||+|++.+... ++.|.++|||.+....|+.+|++.++|..|........ -+.+ 
T Consensus       465 ~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~-  540 (1227)
T COG5038         465 VTFS--DRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEF-  540 (1227)
T ss_pred             EEec--cccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeee-
Confidence            9975  34556999999999999999999888754 66999999999988999999999999999876554332 3333 


Q ss_pred             ccccccCCCcceeEEEEEEEEEecCCCCCcCCCCCCCCChhhHHHHhhcCcccccCCCCCccccccchhhhccccccccc
Q 008334          364 KDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIR  443 (569)
Q Consensus       364 ~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (569)
                           .+..+..|+++.++.|+|.-..+....+                      +.+               +.+....
T Consensus       541 -----~~~~k~vGrL~yDl~ffp~~e~k~~~~~----------------------s~e---------------~~ed~n~  578 (1227)
T COG5038         541 -----LRNTKNVGRLTYDLRFFPVIEDKKELKG----------------------SVE---------------PLEDSNT  578 (1227)
T ss_pred             -----eccCccceEEEEeeeeecccCCcccccc----------------------ccC---------------CcccCCc
Confidence                 3467889999999999986443321110                      000               0011346


Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCce
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY  523 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~  523 (569)
                      |++.+++.++++|.... ......+++++++. ...+.|+.++.+.+|.||+++...+.+.....+.+.++|..  ..+.
T Consensus       579 GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~-keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~~  654 (1227)
T COG5038         579 GILKVTLREVKALDELS-SKKDNKSAELYTNA-KEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGKV  654 (1227)
T ss_pred             ceeEEEeeccccccCcc-ccccceeEEEEecc-eEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCce
Confidence            99999999999997643 12233448888875 56788899999999999999999999888889999999876  3478


Q ss_pred             eEEEEEecceeeec-ceEeEEEEcCCCCCeEEEEEEEEeecCC
Q 008334          524 MGRCILTLTRVILE-GEYTDCFELDGTKSGKLKLHLKWMPQPI  565 (569)
Q Consensus       524 lG~~~i~l~~l~~~-~~~~~w~~L~~~~~G~i~l~~~~~p~~~  565 (569)
                      +|....+|.+++.. ....+||++. .+.|+|.+.--|+|.+.
T Consensus       655 i~~~~~~l~~li~~t~dt~~~f~~~-~~kg~I~~t~~W~Pi~~  696 (1227)
T COG5038         655 IATEGSTLPDLIDRTLDTFLVFPLR-NPKGRIFITNYWKPIYN  696 (1227)
T ss_pred             eccccccchHhhhccccceEEEEcC-CCcceEEEEeccceeec
Confidence            88888888887655 4568999999 66899999999999864

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.1e-30  Score=264.53  Aligned_cols=224  Identities=34%  Similarity=0.530  Sum_probs=193.4

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEec--CCCcEEEEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD  330 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~v~d  330 (569)
                      +......|.|+|++|++|+..|..|.+||||++++.|....+.+|++.++++||+|||+|.|.+..  .....|.+.|||
T Consensus       162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~  241 (421)
T KOG1028|consen  162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD  241 (421)
T ss_pred             ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence            335678899999999999999977789999999999888889999999999999999999999653  357799999999


Q ss_pred             CCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEecCCCCCcCCCCCCCCChhhHHHHh
Q 008334          331 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVL  410 (569)
Q Consensus       331 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~  410 (569)
                      +|+++++++||++.++|..+........|.++......  .....|+|.++++|.|                        
T Consensus       242 ~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~--~~~~~gel~~sL~Y~p------------------------  295 (421)
T KOG1028|consen  242 FDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTD--SEELAGELLLSLCYLP------------------------  295 (421)
T ss_pred             cCCcccccEEEEEEecCccccccccceeeeccccccCC--cccccceEEEEEEeec------------------------
Confidence            99999999999999999988777667889999765322  1222389999999986                        


Q ss_pred             hcCcccccCCCCCccccccchhhhccccccccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---eeEeecccCC
Q 008334          411 TNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVND  487 (569)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---~~~~T~~~~~  487 (569)
                                                     ..|.|+|.|++|++|...+..+.+||||++++-...   .+++|.+.++
T Consensus       296 -------------------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~  344 (421)
T KOG1028|consen  296 -------------------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK  344 (421)
T ss_pred             -------------------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC
Confidence                                           248999999999999999999999999999985432   4789999999


Q ss_pred             CCCCeeceEEEEEec--cCCCCEEEEEEEECCCCCC-ceeEEEEEecce
Q 008334          488 CLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTR  533 (569)
Q Consensus       488 t~nP~w~e~f~f~v~--~~~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~  533 (569)
                      +.||+|||+|.|.|.  ...+..|.|+|||++..+. ++||++.+....
T Consensus       345 ~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  345 TLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             CCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence            999999999999887  3345689999999999987 799999998775

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.90  E-value=4.5e-23  Score=211.52  Aligned_cols=250  Identities=21%  Similarity=0.352  Sum_probs=200.7

Q ss_pred             EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCC
Q 008334          258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  337 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d  337 (569)
                      ..|.|+|.+|+||++.+..|..||||.|.++  ...+.+|.++.+++.|.|.|+|+|.+... -+.|.|-|||.| +++|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD--~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D   80 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD--QEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRD   80 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeec--chhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-cccc
Confidence            4688999999999999999999999999997  46789999999999999999999999743 458999999999 8999


Q ss_pred             cceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEecCCCCCcCCCCCCCCChhhHHHHhhcCcccc
Q 008334          338 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKAL  417 (569)
Q Consensus       338 ~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (569)
                      +.||.+.+.=++|......+.|+.|++   ...+....|++++++.+.+....                           
T Consensus        81 ~~IGKvai~re~l~~~~~~d~W~~L~~---VD~dsEVQG~v~l~l~~~e~~~~---------------------------  130 (800)
T KOG2059|consen   81 DIIGKVAIKREDLHMYPGKDTWFSLQP---VDPDSEVQGKVHLELALTEAIQS---------------------------  130 (800)
T ss_pred             cccceeeeeHHHHhhCCCCccceeccc---cCCChhhceeEEEEEEeccccCC---------------------------
Confidence            999999999999987778899999964   24466789999999998642110                           


Q ss_pred             cCCCCCccccccchhhhccccccccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC--eeEeecccCCCCCCeece
Q 008334          418 KSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE--TRNKTRVVNDCLNPIWNQ  495 (569)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~--~~~~T~~~~~t~nP~w~e  495 (569)
                                                .-+...+.+++++-+.. ++.+|||+++...+..  +..+|+++++|.+|.|+|
T Consensus       131 --------------------------~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~E  183 (800)
T KOG2059|consen  131 --------------------------SGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDE  183 (800)
T ss_pred             --------------------------CcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhh
Confidence                                      11222334444554443 4569999999986532  346899999999999999


Q ss_pred             EEEEEeccC---------------CCCEEEEEEEEC-CCCC-CceeEEEEEecceeeecceEeEEEEcCC----------
Q 008334          496 TFDFVVEDG---------------LHDMLIAEVWDH-DTFG-KDYMGRCILTLTRVILEGEYTDCFELDG----------  548 (569)
Q Consensus       496 ~f~f~v~~~---------------~~~~l~i~V~d~-~~~~-~d~lG~~~i~l~~l~~~~~~~~w~~L~~----------  548 (569)
                      .|.|.+...               ....|.+++|+. +... ++|+|++.+++...........||-|..          
T Consensus       184 v~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~  263 (800)
T KOG2059|consen  184 VFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDG  263 (800)
T ss_pred             heeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCC
Confidence            999998633               234688999984 4444 4699999999999876677799999953          


Q ss_pred             CCCeEEEEEEEEeecCCCCC
Q 008334          549 TKSGKLKLHLKWMPQPIYRD  568 (569)
Q Consensus       549 ~~~G~i~l~~~~~p~~~~~~  568 (569)
                      ..-|.+++.+.|...++|++
T Consensus       264 ~~lGslrl~v~y~~D~Vlps  283 (800)
T KOG2059|consen  264 GDLGSLRLNVTYTEDHVLPS  283 (800)
T ss_pred             CCccceeeeEEeeeceeccH
Confidence            23589999999999999875

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.88  E-value=8.1e-22  Score=168.14  Aligned_cols=119  Identities=24%  Similarity=0.454  Sum_probs=103.3

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCC-CCCCeeccEEEEEEecCCCcEEEEEEEECCCCC
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  335 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~  335 (569)
                      .|+|.|+|++|++++..+ .|++||||++.++   +++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.++
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg---~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~   75 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVG---HAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT   75 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEEC---CEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence            489999999999998777 7999999999997   67789999865 89999999999999754 458999999999999


Q ss_pred             CCcceEEEEEEcc-ccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          336 SSELIGCAQVRLC-ELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       336 ~d~~iG~~~i~l~-~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      +|++||++.+++. .+..+...+.|++|.+.    .+....|+|+++++|
T Consensus        76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~----~~~~~~g~i~l~l~y  121 (121)
T cd04016          76 MDERIAWTHITIPESVFNGETLDDWYSLSGK----QGEDKEGMINLVFSY  121 (121)
T ss_pred             CCceEEEEEEECchhccCCCCccccEeCcCc----cCCCCceEEEEEEeC
Confidence            9999999999996 57778778999999753    234577999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.87  E-value=6.6e-20  Score=198.63  Aligned_cols=345  Identities=25%  Similarity=0.374  Sum_probs=231.4

Q ss_pred             CcchhHHHHHHHHHHHhhhccccce-------Eee---eCCC-C-Cccc-cccCccEEEEEEEEEeeccccCCCCCCCCc
Q 008334          215 IPGLSDSIEATIHDAIEDSITWPVR-------KIV---PILP-G-DYSE-LELKPVGTLEVKLVQAKGLTNKDLIGKSDP  281 (569)
Q Consensus       215 iP~l~~~~~~~i~~~l~~~~~~P~~-------~~~---~l~~-~-~~~~-~~~~~~g~L~V~v~~a~~L~~~d~~g~~dp  281 (569)
                      ++....-+...+.......++.|.+       +..   |+.- + ..+. ....+.|.++|+|..|.+|.+....+++||
T Consensus       655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP  734 (1227)
T COG5038         655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP  734 (1227)
T ss_pred             eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence            3444334456666666666666665       111   3321 1 1111 234789999999999999998888899999


Q ss_pred             EEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCCCcee---EE
Q 008334          282 YAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK---DV  358 (569)
Q Consensus       282 yv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~---~~  358 (569)
                      |+++.+.  +..+++|-....+.||.||+..+..+... .+.+.++++|+...+.|..+|++.++++++......   ..
T Consensus       735 ya~v~~n--~~~k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~  811 (1227)
T COG5038         735 YATVLVN--NLVKYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME  811 (1227)
T ss_pred             ceEEEec--ceeEEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence            9999997  36678998889999999999988888754 567999999999999999999999999988542111   11


Q ss_pred             EEE---ccccccccCCCcceeEEEEEEEEEecCCCCCcC-------------------------CCCCCC--------CC
Q 008334          359 WLK---LVKDLDVQRDTKYRGQVHLELLYCPFGMENVFT-------------------------NPFAPN--------FS  402 (569)
Q Consensus       359 ~~~---L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~-------------------------~~~~~~--------~~  402 (569)
                      .+.   ...++. ..+.+..|++.+.+.|+|.....+.+                         .+...+        .+
T Consensus       812 ~i~g~~~t~~l~-~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~  890 (1227)
T COG5038         812 TIDGAEETGKLS-LTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIE  890 (1227)
T ss_pred             eecCcccccccc-cccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhccee
Confidence            110   011111 11456789999999999864332210                         000000        00


Q ss_pred             ---hhh---------HHHHhhcCc----------------------------------cccc-CCCCCcc----------
Q 008334          403 ---MTS---------LEKVLTNGE----------------------------------KALK-SGANGTE----------  425 (569)
Q Consensus       403 ---~~~---------~~~~~~~~~----------------------------------~~~~-~~~~~~~----------  425 (569)
                         +.+         +...++-.+                                  ++.. ....+..          
T Consensus       891 v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~  970 (1227)
T COG5038         891 VEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEY  970 (1227)
T ss_pred             eccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhcc
Confidence               000         111111000                                  0000 0000000          


Q ss_pred             ------ccc----cc-------------------hh----------------------hhccccccccceEEEEEEEEeE
Q 008334          426 ------AIE----LE-------------------KD----------------------ASQKRREVIIRGVLSVTVILAE  454 (569)
Q Consensus       426 ------~~~----~~-------------------~~----------------------~~~~~~~~~~~~~L~v~v~~a~  454 (569)
                            ...    .+                   +.                      ..+.......+|.|.|.+.+|.
T Consensus       971 s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~ 1050 (1227)
T COG5038         971 SETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGE 1050 (1227)
T ss_pred             ceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccC
Confidence                  000    00                   00                      0000112245899999999999


Q ss_pred             cCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ceeEEEEEecce
Q 008334          455 NLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTR  533 (569)
Q Consensus       455 ~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~  533 (569)
                      ||+..|.+|.+||||++.+++ +..++|+++++|+||+|||.++..|.+...+.+.|.|+|++...+ |.||.+.++|+.
T Consensus      1051 nl~~~d~ng~sDpfv~~~ln~-k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~ 1129 (1227)
T COG5038        1051 NLPSSDENGYSDPFVKLFLNE-KSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSK 1129 (1227)
T ss_pred             CCcccccCCCCCceEEEEecc-eecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhh
Confidence            999999999999999999986 458999999999999999999999998788999999999998766 799999999999


Q ss_pred             eeecceEeEEEEcCCCC----CeEEEEEEEEeecC
Q 008334          534 VILEGEYTDCFELDGTK----SGKLKLHLKWMPQP  564 (569)
Q Consensus       534 l~~~~~~~~w~~L~~~~----~G~i~l~~~~~p~~  564 (569)
                      +..++......+|.+..    .|.++..+.+++.+
T Consensus      1130 l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~~~ 1164 (1227)
T COG5038        1130 LEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRSKY 1164 (1227)
T ss_pred             cCcCCccceeeeccCcceEecccEeecceecchhh
Confidence            98888777888888764    45555555555543

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.85  E-value=1.6e-20  Score=163.29  Aligned_cols=119  Identities=21%  Similarity=0.480  Sum_probs=102.9

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEec-----CCCcEEEEEEEECCCC
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-----ESTQHLVVRIYDDEGI  334 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-----~~~~~L~i~v~d~~~~  334 (569)
                      ++|+|++|+||+..+..|.+||||+++++   .++++|++++++.||+|||+|.|.+..     .....|.++|||++.+
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~---~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~   77 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG---KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL   77 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEEC---CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence            47999999999999988999999999997   677899999999999999999999976     3567899999999998


Q ss_pred             CCCcceEEEEEEccccC--CCceeEEEEEccccccccCCCcceeEEEEEEE
Q 008334          335 QSSELIGCAQVRLCELE--PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELL  383 (569)
Q Consensus       335 ~~d~~iG~~~i~l~~l~--~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~  383 (569)
                      ++|++||++.+++.++.  .+.....|++|.....  ...+.+|+|++.++
T Consensus        78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~--~~~~~~Gei~l~~~  126 (126)
T cd08682          78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG--KDDKERGEIEVDIQ  126 (126)
T ss_pred             CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC--CCccccceEEEEeC
Confidence            88999999999999987  5667789999974321  34567899999863

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.84  E-value=3.5e-20  Score=158.06  Aligned_cols=113  Identities=25%  Similarity=0.470  Sum_probs=98.3

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCC-CCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-  521 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~-t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-  521 (569)
                      |.|.|+|++|++++..+ .|.+||||++.+++  .+++|+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.+++ 
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~--~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~d   77 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH--AVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMD   77 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEECC--EEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCC
Confidence            78999999999988777 68999999999976  6779999865 79999999999999854 4679999999999886 


Q ss_pred             ceeEEEEEecc-eeeecceEeEEEEcCC----CCCeEEEEEEEE
Q 008334          522 DYMGRCILTLT-RVILEGEYTDCFELDG----TKSGKLKLHLKW  560 (569)
Q Consensus       522 d~lG~~~i~l~-~l~~~~~~~~w~~L~~----~~~G~i~l~~~~  560 (569)
                      ++||.+.+++. .+..+...+.||+|.+    ...|+|+|+++|
T Consensus        78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          78 ERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             ceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            79999999996 4666666799999976    457999999986

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.83  E-value=3.3e-20  Score=159.53  Aligned_cols=117  Identities=35%  Similarity=0.567  Sum_probs=102.7

Q ss_pred             EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecC-CCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCC
Q 008334          258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  336 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~  336 (569)
                      |.|+|+|++|++|++.+..+.+||||+++++   .++++|+++. ++.||+|||+|.|.+.....+.|.|+|||++..+ 
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-   76 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-   76 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence            7899999999999999988999999999997   4678888874 5799999999999998766678999999999876 


Q ss_pred             CcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          337 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       337 d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      |++||++.+++.++..+.....|++|..      +++..|+|+++++|
T Consensus        77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~------~~~~~G~i~l~l~f  118 (118)
T cd08681          77 PDLIGDTEVDLSPALKEGEFDDWYELTL------KGRYAGEVYLELTF  118 (118)
T ss_pred             CcceEEEEEecHHHhhcCCCCCcEEecc------CCcEeeEEEEEEEC
Confidence            8999999999999877766789999853      34688999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.83  E-value=1.1e-19  Score=156.83  Aligned_cols=120  Identities=33%  Similarity=0.531  Sum_probs=106.5

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  339 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  339 (569)
                      |+|+|++|++|+..+..|.+||||+++++  +.+.++|+++.++.||+|||+|.|.+.+. .+.|.|+|||++..++|++
T Consensus         2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~   78 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDF   78 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcc
Confidence            78999999999999988999999999986  24678999999999999999999998764 4689999999999989999


Q ss_pred             eEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334          340 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       340 iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      ||.+.+++.++..+...+.|++|...    +..+..|+|++.+.|.|
T Consensus        79 iG~~~~~l~~l~~~~~~~~~~~L~~~----~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          79 MGSAFVDLSTLELNKPTEVKLKLEDP----NSDEDLGYISLVVTLTP  121 (121)
T ss_pred             eEEEEEEHHHcCCCCCeEEEEECCCC----CCccCceEEEEEEEECC
Confidence            99999999999988889999999642    22467999999999865

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.82  E-value=1.3e-19  Score=154.07  Aligned_cols=108  Identities=23%  Similarity=0.387  Sum_probs=92.9

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEe----cCCCCeEEeeecCCCCCCeeccEEEEEEecC---CCcEEEEEEEEC
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVR----PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDD  331 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~----~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~v~d~  331 (569)
                      .|+|+|++|++|+..+ .|.+||||++++.    +...++++|+++++++||+|||+|.|.+...   ....|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            4899999999999887 4999999999984    1223467899999999999999999999742   345799999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEcccccc
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD  367 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~  367 (569)
                      +..++|++||++.+++.++..++....|++|.+...
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~  115 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH  115 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence            988889999999999999999888999999976543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=2e-19  Score=154.42  Aligned_cols=115  Identities=30%  Similarity=0.451  Sum_probs=100.0

Q ss_pred             EEEEEEEeec---cccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCC-
Q 008334          260 LEVKLVQAKG---LTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ-  335 (569)
Q Consensus       260 L~V~v~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~-  335 (569)
                      |.|+|++|++   |..+|..|.+||||+++++   .++.+|+++++++||+|||+|.|.+.+.. ..|.|+|||++..+ 
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g---~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~~   77 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG---PKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSHW   77 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEEC---CEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCccc
Confidence            7899999999   8888999999999999997   67889999999999999999999997654 48999999998863 


Q ss_pred             -----CCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEE
Q 008334          336 -----SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHL  380 (569)
Q Consensus       336 -----~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l  380 (569)
                           +|++||++.+++.++..+...+.|++|....  .++.+..|+|+.
T Consensus        78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~~~~g~l~~  125 (126)
T cd08379          78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN--PSGVKKMGELEC  125 (126)
T ss_pred             cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC--CCCccCCcEEEe
Confidence                 8999999999999999998899999997432  224556777764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.82  E-value=1.8e-19  Score=155.79  Aligned_cols=115  Identities=37%  Similarity=0.647  Sum_probs=103.9

Q ss_pred             eEEEEEEEEeEcCCCCCC------CCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECC
Q 008334          444 GVLSVTVILAENLPASDL------MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD  517 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~------~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~  517 (569)
                      |.|+|+|++|++|+..+.      .|.+||||++++++  ..++|++++++.||.|||.|.|.+.+.....|.|+|||++
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~--~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~   78 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDED   78 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC--EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecC
Confidence            579999999999998764      36899999999975  7889999999999999999999998666789999999998


Q ss_pred             CCCCceeEEEEEecceeeecceEeEEEEcCCCCCeEEEEEEEE
Q 008334          518 TFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW  560 (569)
Q Consensus       518 ~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~  560 (569)
                      ..++++||++.+++.++..++..++||+|.+...|+|+++++|
T Consensus        79 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          79 PDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             CCCCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence            8855799999999999988777799999999889999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.82  E-value=3.3e-19  Score=156.40  Aligned_cols=119  Identities=25%  Similarity=0.464  Sum_probs=103.3

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  334 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~  334 (569)
                      ...|.|+|+|++|++|++.+..|.+||||+++++   .+.++|++++++.||.|||+|.|.+.+...+.|.|+|||++..
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~---~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~   88 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG---SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF   88 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence            5789999999999999999988999999999996   6789999999999999999999999877777899999999998


Q ss_pred             CCCcceEEEEEEccccCC-----CceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          335 QSSELIGCAQVRLCELEP-----GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       335 ~~d~~iG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      ++|++||++.+++.++..     ......|..+        .++..|+|++++.+
T Consensus        89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~--------~~~~~g~i~l~~~~  135 (136)
T cd08375          89 SPDDFLGRTEIRVADILKETKESKGPITKRLLL--------HEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCCeeEEEEEEHHHhccccccCCCcEEEEecc--------ccccceeEEEEEEe
Confidence            899999999999999875     2222344443        35778999999876

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.82  E-value=2.8e-19  Score=153.91  Aligned_cols=116  Identities=27%  Similarity=0.537  Sum_probs=102.4

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  339 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  339 (569)
                      |+|+|++|++|++.+..+.+||||++++.+.+.+.++|++++++.||+|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            789999999999998889999999999974445678999999999999999999998766566899999999988 8999


Q ss_pred             eEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          340 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       340 iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      ||++.+++.++..+.....|++|.+        +..|++++++.+
T Consensus        81 iG~~~~~l~~l~~g~~~~~~~~L~~--------~~~g~l~~~~~~  117 (119)
T cd04036          81 LGTVLFDVSKLKLGEKVRVTFSLNP--------QGKEELEVEFLL  117 (119)
T ss_pred             cEEEEEEHHHCCCCCcEEEEEECCC--------CCCceEEEEEEe
Confidence            9999999999999989999999842        357888888765

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.81  E-value=9.6e-20  Score=152.60  Aligned_cols=108  Identities=16%  Similarity=0.216  Sum_probs=91.6

Q ss_pred             cccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecC-CCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334          252 LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  328 (569)
Q Consensus       252 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v  328 (569)
                      .+....|.|+|+|++|++|+ .  .|.+||||++++.+. +..+++|++.++|+||+|||+|.|.+...  ....|.|.|
T Consensus         8 ~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V   84 (118)
T cd08677           8 SYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL   84 (118)
T ss_pred             EEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence            34567899999999999998 2  467999999999753 34678999999999999999999998643  566899999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCceeEEEEEc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  362 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L  362 (569)
                      ||+|+++++++||++.++++++..+...+.|..|
T Consensus        85 ~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          85 RCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             EeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            9999999999999999999988666666777543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.81  E-value=1.8e-19  Score=156.67  Aligned_cols=112  Identities=22%  Similarity=0.455  Sum_probs=97.6

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEecc-----CCCCEEEEEEEECCCCC
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-----GLHDMLIAEVWDHDTFG  520 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~-----~~~~~l~i~V~d~~~~~  520 (569)
                      ++|+|++|+||+..+..|.+||||++++++  .+++|++++++.||+|||.|.|.+..     +....|.++|||++..+
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~--~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~   78 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK--EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG   78 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECC--eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC
Confidence            479999999999998889999999999975  67899999999999999999999976     35678999999999887


Q ss_pred             C-ceeEEEEEecceee--ecceEeEEEEcCCC------CCeEEEEEEE
Q 008334          521 K-DYMGRCILTLTRVI--LEGEYTDCFELDGT------KSGKLKLHLK  559 (569)
Q Consensus       521 ~-d~lG~~~i~l~~l~--~~~~~~~w~~L~~~------~~G~i~l~~~  559 (569)
                      + ++||++.|+++++.  .+....+||+|.+.      ..|+|+|+++
T Consensus        79 ~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          79 LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            4 79999999999987  44556899999742      4699999875

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.81  E-value=4e-19  Score=152.28  Aligned_cols=115  Identities=29%  Similarity=0.445  Sum_probs=103.7

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCc
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  338 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~  338 (569)
                      +++|+|++|++|+..+..+.+||||+++++   ++.++|++++++.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~   77 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG---NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE   77 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEEC---CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            478999999999999988999999999996   57789999999999999999999998766779999999999988999


Q ss_pred             ceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          339 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       339 ~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                      +||++.+++.++..+...+.|++|.+         ..|++++.+.|.
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~w~~L~~---------~~G~~~~~~~~~  115 (116)
T cd08376          78 FIGRCEIDLSALPREQTHSLELELED---------GEGSLLLLLTLT  115 (116)
T ss_pred             eEEEEEEeHHHCCCCCceEEEEEccC---------CCcEEEEEEEec
Confidence            99999999999998888999999842         259999998874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.81  E-value=1.8e-19  Score=154.97  Aligned_cols=115  Identities=30%  Similarity=0.533  Sum_probs=101.4

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccC-CCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCc
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD  522 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d  522 (569)
                      |.|+|+|.+|++|+..+..+.+||||++++++  .+.+|+++. .+.||+|||.|.|.+.....+.|.|+|||++..+++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~   78 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG--VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPD   78 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECC--CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCc
Confidence            67999999999999999889999999999976  567888875 478999999999999876667899999999887767


Q ss_pred             eeEEEEEecceeeecceEeEEEEcCCC--CCeEEEEEEEE
Q 008334          523 YMGRCILTLTRVILEGEYTDCFELDGT--KSGKLKLHLKW  560 (569)
Q Consensus       523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~--~~G~i~l~~~~  560 (569)
                      +||++.++++++..+....+||+|...  ..|+|+++++|
T Consensus        79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          79 LIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             ceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence            999999999998777677999999754  57999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=4e-19  Score=158.25  Aligned_cols=125  Identities=22%  Similarity=0.405  Sum_probs=106.3

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCC-CCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCC
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  337 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d  337 (569)
                      .|+|+|++|++|+..+..|.+||||+++++   ++..+|+++.+ +.||+|||+|.|.+.++..+.+.|+|||++..++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d   77 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD   77 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence            378999999999999999999999999998   57889998866 69999999999999876667899999999988889


Q ss_pred             cceEEEEEEccccCCC----ceeEEEEEccccccc---cCCCcceeEEEEEEEEEe
Q 008334          338 ELIGCAQVRLCELEPG----KVKDVWLKLVKDLDV---QRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       338 ~~iG~~~i~l~~l~~~----~~~~~~~~L~~~~~~---~~~~~~~G~l~l~l~~~p  386 (569)
                      ++||++.++|.++..+    ...+.|++|.+....   .+..+..|+|++.+.|.+
T Consensus        78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~  133 (150)
T cd04019          78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG  133 (150)
T ss_pred             CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence            9999999999998643    446899999765321   134567899999999964

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=2.9e-19  Score=155.64  Aligned_cols=121  Identities=29%  Similarity=0.412  Sum_probs=103.8

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCC---CcEEEEEEEECCCCC
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES---TQHLVVRIYDDEGIQ  335 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~---~~~L~i~v~d~~~~~  335 (569)
                      .|+|+|++|++|.+.+..|.+||||+++++   ++.++|++++++.||+|||+|.|.+.+..   ...|.|+|||++..+
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~   77 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG   77 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence            489999999999999988999999999997   57789999999999999999999987542   358999999999876


Q ss_pred             -CCcceEEEEEEccccC-CCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          336 -SSELIGCAQVRLCELE-PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       336 -~d~~iG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                       +|++||++.+++.++. .+.....|++|.+..   ..++.+|+|++.+.+.
T Consensus        78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~~  126 (127)
T cd04022          78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG---LFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC---CCCCccEEEEEEEEEc
Confidence             7999999999999997 567778999997532   2345789999998873

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.81  E-value=7.8e-19  Score=154.00  Aligned_cols=117  Identities=32%  Similarity=0.570  Sum_probs=105.2

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  521 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~  521 (569)
                      ..|.|+|+|++|++|+..+..|.+||||+++++.  ..++|++++++.||.|||.|.|.+.++..+.|.|+|||++..++
T Consensus        13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~--~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~   90 (136)
T cd08375          13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS--QEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP   90 (136)
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence            4599999999999999998889999999999965  67899999999999999999999987777889999999998765


Q ss_pred             -ceeEEEEEecceeee-----cceEeEEEEcCCCCCeEEEEEEEE
Q 008334          522 -DYMGRCILTLTRVIL-----EGEYTDCFELDGTKSGKLKLHLKW  560 (569)
Q Consensus       522 -d~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~i~l~~~~  560 (569)
                       ++||++.+++.++..     ......|.++.+...|+|++++.+
T Consensus        91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          91 DDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence             799999999999886     234578899999999999999876

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=5.4e-19  Score=151.77  Aligned_cols=109  Identities=28%  Similarity=0.435  Sum_probs=95.9

Q ss_pred             EEEEEEEEeEc---CCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCC--
Q 008334          445 VLSVTVILAEN---LPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF--  519 (569)
Q Consensus       445 ~L~v~v~~a~~---L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~--  519 (569)
                      .|+|+|++|++   |+..+..|.+||||.+++++  ++.||++++++.||+|||+|.|.+.++ ...|.|+|||++..  
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~--~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~   77 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP--KWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHW   77 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECC--EEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCccc
Confidence            38999999999   88889999999999999975  678999999999999999999999864 45899999999886  


Q ss_pred             -----CCceeEEEEEecceeeecceEeEEEEcCC------CCCeEEEE
Q 008334          520 -----GKDYMGRCILTLTRVILEGEYTDCFELDG------TKSGKLKL  556 (569)
Q Consensus       520 -----~~d~lG~~~i~l~~l~~~~~~~~w~~L~~------~~~G~i~l  556 (569)
                           ++++||++.++++++..+.....||+|..      .+.|+|++
T Consensus        78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence                 55899999999999988888899999973      24677764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.80  E-value=5e-19  Score=154.64  Aligned_cols=123  Identities=33%  Similarity=0.539  Sum_probs=105.9

Q ss_pred             EEEEEEEEEeeccccCCC--CCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCC
Q 008334          258 GTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  335 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~  335 (569)
                      |.|+|+|++|++|+..+.  .+.+||||+++++   .++++|++++++.||+|||+|.|.+.+...+.|.|+|||++..+
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~   77 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG---AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA   77 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC---CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence            789999999999999888  7899999999986   67789999999999999999999998766779999999999988


Q ss_pred             CCcceEEEEEEccccC---CCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          336 SSELIGCAQVRLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       336 ~d~~iG~~~i~l~~l~---~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      ++++||++.+++.++.   .......|++|.+... .......|+|++.+.|
T Consensus        78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~-~~~~~~~G~i~l~~~~  128 (128)
T cd04024          78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP-GKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCCcceEEEEEHHHhhcccccCccceeEEccCccc-CccccccceEEEEEEC
Confidence            8999999999999986   3344679999975422 2345679999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.80  E-value=6.8e-19  Score=151.50  Aligned_cols=115  Identities=26%  Similarity=0.526  Sum_probs=102.9

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCcee
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYM  524 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~l  524 (569)
                      |+|+|++|++|+..+..+.+||||++++++ ...+++|++++++.||+|||+|.|.+.......|.|+|||++..++++|
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i   81 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL   81 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence            789999999999988888999999999963 2457899999999999999999999986656789999999998855899


Q ss_pred             EEEEEecceeeecceEeEEEEcCCCCCeEEEEEEEE
Q 008334          525 GRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW  560 (569)
Q Consensus       525 G~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~  560 (569)
                      |++.++++++..+.....||+|...+.|++++++..
T Consensus        82 G~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~  117 (119)
T cd04036          82 GTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL  117 (119)
T ss_pred             EEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence            999999999988888899999999889999998865

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=9.5e-19  Score=149.99  Aligned_cols=114  Identities=33%  Similarity=0.584  Sum_probs=103.1

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ce
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY  523 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~  523 (569)
                      +++|+|++|++|+..+..+.+||||++++++  .+++|+++++|.||.|||.|.|.+.+.....|.|+|||++..++ ++
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~   78 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN--EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEF   78 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECC--EeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCe
Confidence            3789999999999998889999999999965  67899999999999999999999987667899999999998765 79


Q ss_pred             eEEEEEecceeeecceEeEEEEcCCCCCeEEEEEEEEe
Q 008334          524 MGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWM  561 (569)
Q Consensus       524 lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~  561 (569)
                      ||++.++++++..+.....|++|++. .|+|++.+.|.
T Consensus        79 iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~  115 (116)
T cd08376          79 IGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT  115 (116)
T ss_pred             EEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence            99999999999888888999999876 69999998874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=1.3e-18  Score=150.13  Aligned_cols=116  Identities=28%  Similarity=0.457  Sum_probs=103.2

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ce
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY  523 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~  523 (569)
                      +|+|+|++|++|+..+..|.+||||++++++ ...++|++++++.||.|||.|.|.+.+. .+.|.|+|||++..++ ++
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~   78 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDF   78 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC-EEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcc
Confidence            3789999999999999889999999999964 4578999999999999999999999764 5789999999999855 79


Q ss_pred             eEEEEEecceeeecceEeEEEEcCCC----CCeEEEEEEEEee
Q 008334          524 MGRCILTLTRVILEGEYTDCFELDGT----KSGKLKLHLKWMP  562 (569)
Q Consensus       524 lG~~~i~l~~l~~~~~~~~w~~L~~~----~~G~i~l~~~~~p  562 (569)
                      ||++.+++.++..+...+.|++|.+.    ..|+|++.+.+.|
T Consensus        79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          79 MGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             eEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence            99999999999888888999999744    3699999999986

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.80  E-value=1.4e-18  Score=149.49  Aligned_cols=119  Identities=29%  Similarity=0.464  Sum_probs=101.5

Q ss_pred             EEEEEEEeeccccCC-CCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCc
Q 008334          260 LEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  338 (569)
Q Consensus       260 L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~  338 (569)
                      |.|+|++|+||+..+ ..|.+||||+++++  +...++|+++++|.||+|||+|.|.+.+. ...|.|.|||++..++|+
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~   78 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS   78 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence            679999999999874 45789999999996  33578999999999999999999999754 468999999999999999


Q ss_pred             ceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          339 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       339 ~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      +||.+.++++++..+...+.|++|.+.   ...++..|+|++++.+
T Consensus        79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~---~~~~~~~G~i~l~~~~  121 (121)
T cd08401          79 VIGKVAIKKEDLHKYYGKDTWFPLQPV---DADSEVQGKVHLELRL  121 (121)
T ss_pred             eEEEEEEEHHHccCCCCcEeeEEEEcc---CCCCcccEEEEEEEEC
Confidence            999999999999888888999999754   2234568999998763

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.80  E-value=1.9e-18  Score=150.14  Aligned_cols=122  Identities=30%  Similarity=0.481  Sum_probs=104.3

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  339 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  339 (569)
                      |.|+|++|++|+.  ..|.+||||+++++. ..++++|+++.++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~   76 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE-PPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF   76 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECC-CCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence            5799999999987  678999999999862 2457899999999999999999999864 35689999999999888999


Q ss_pred             eEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEec
Q 008334          340 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  387 (569)
Q Consensus       340 iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~  387 (569)
                      ||++.++++++..+.....|++|.+...  ...+..|+|.+++.|.+.
T Consensus        77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~~~~G~l~l~~~~~~~  122 (126)
T cd08678          77 LGLAIVPFDELRKNPSGRQIFPLQGRPY--EGDSVSGSITVEFLFMEP  122 (126)
T ss_pred             EEEEEEeHHHhccCCceeEEEEecCCCC--CCCCcceEEEEEEEEecc
Confidence            9999999999988887889999974321  235679999999999853

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.80  E-value=5.2e-19  Score=152.34  Aligned_cols=105  Identities=27%  Similarity=0.456  Sum_probs=93.6

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEE-e--cCCCcEEEEEEEEC
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIV-E--DESTQHLVVRIYDD  331 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v-~--~~~~~~L~i~v~d~  331 (569)
                      .|.|.|+|++|++|+..+ .+.+||||++++.+..  ..++||++++++.||+|||+|.|.+ .  +.....|.|+|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            588999999999999999 8999999999998643  3478999999999999999999987 2  23566899999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEc
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKL  362 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L  362 (569)
                      +..+++++||++.++|.++..+...+.|++|
T Consensus        91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            9999999999999999999888778899987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.80  E-value=1e-18  Score=151.36  Aligned_cols=121  Identities=24%  Similarity=0.486  Sum_probs=105.2

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCc
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  338 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~  338 (569)
                      +|+|+|++|++|...+..+.+||||+++++   ++.++|++++++.||+|||+|.|.+.......|.|+|||++..++++
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~   77 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND   77 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEEC---CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            489999999999999988899999999986   56789999999999999999999998766678999999999988999


Q ss_pred             ceEEEEEEccccCCCceeEEEEEccccccc-cCCCcceeEEEEEE
Q 008334          339 LIGCAQVRLCELEPGKVKDVWLKLVKDLDV-QRDTKYRGQVHLEL  382 (569)
Q Consensus       339 ~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~-~~~~~~~G~l~l~l  382 (569)
                      +||.+.+++.++..+...+.|+.|.+.... ...++..|.|++.+
T Consensus        78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             EeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            999999999999877777899999754322 23567889998875

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.80  E-value=1.1e-18  Score=150.22  Aligned_cols=102  Identities=31%  Similarity=0.514  Sum_probs=90.0

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEe-c--cCCCCEEEEEEEECC
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVV-E--DGLHDMLIAEVWDHD  517 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v-~--~~~~~~l~i~V~d~~  517 (569)
                      +.|.|.|++|++|+..+ .+.+||||++++...   ..+++|++++++.||+|||+|.|.+ .  +.....|.|+|||++
T Consensus        13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d   91 (122)
T cd08381          13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD   91 (122)
T ss_pred             CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence            77999999999999999 899999999999642   3478999999999999999999987 2  335678999999999


Q ss_pred             CCCC-ceeEEEEEecceeeecceEeEEEEc
Q 008334          518 TFGK-DYMGRCILTLTRVILEGEYTDCFEL  546 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L  546 (569)
                      ..++ ++||++.++|+++...+....||+|
T Consensus        92 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          92 SLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            8875 7999999999999877777999987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.80  E-value=7.7e-19  Score=147.15  Aligned_cols=102  Identities=19%  Similarity=0.295  Sum_probs=86.2

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC--CCeeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEECC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK--SETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  517 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~--~~~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~~  517 (569)
                      ..+.|+|+|++|++|+   ..|.+||||++++..  +..+++|++.++|+||+|||+|.|.+..  ..+..|.|+|||+|
T Consensus        12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D   88 (118)
T cd08677          12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD   88 (118)
T ss_pred             cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence            4588999999999998   246799999999963  2357799999999999999999999874  35668999999999


Q ss_pred             CCCC-ceeEEEEEecceeeecceEeEEEEc
Q 008334          518 TFGK-DYMGRCILTLTRVILEGEYTDCFEL  546 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L  546 (569)
                      .+++ ++||++.+++.++......++|-.|
T Consensus        89 rfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          89 RFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CCCCCceEEEEEEccccccCCccccchhcC
Confidence            9987 7999999999988666666778654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.80  E-value=1.8e-18  Score=152.02  Aligned_cols=105  Identities=27%  Similarity=0.381  Sum_probs=90.5

Q ss_pred             eEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEE-ECCC
Q 008334          444 GVLSVTVILAENLPASD-LMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW-DHDT  518 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~-~~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~-d~~~  518 (569)
                      +.|.|+|++|+||+..+ ..|.+||||++++....   .+.||+++++|+||+|||+|.|.+. ..+..|.|+|| |++.
T Consensus        29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~~  107 (146)
T cd04028          29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCCC
Confidence            77999999999998864 56889999999996432   3789999999999999999999998 56789999999 5666


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      .++ ++||++.|+|+++..+.....||+|...
T Consensus       108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028         108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence            654 7999999999998767777999999764

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=1.1e-18  Score=155.46  Aligned_cols=119  Identities=25%  Similarity=0.305  Sum_probs=102.4

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCC-CCCCeeceEEEEEeccCCCCEEEEEEEECCCCC-Cc
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KD  522 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~-t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~-~d  522 (569)
                      .|+|+|++|++|+..+..|.+||||++++++  ++.+|+++.+ |.||+|||.|+|.+.++..+.+.|+|||++..+ ++
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~--~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd   78 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN--QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDE   78 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECC--EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCC
Confidence            3889999999999999999999999999986  7788998866 699999999999998776778999999998875 47


Q ss_pred             eeEEEEEecceeeec----ceEeEEEEcCCCC-----------CeEEEEEEEEeecCC
Q 008334          523 YMGRCILTLTRVILE----GEYTDCFELDGTK-----------SGKLKLHLKWMPQPI  565 (569)
Q Consensus       523 ~lG~~~i~l~~l~~~----~~~~~w~~L~~~~-----------~G~i~l~~~~~p~~~  565 (569)
                      +||++.++|+++..+    ....+||+|.+..           +|+|+|.+.|.+.+.
T Consensus        79 ~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~  136 (150)
T cd04019          79 PLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH  136 (150)
T ss_pred             eEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence            999999999998653    2358999997542           499999999987653

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.79  E-value=1.4e-18  Score=152.80  Aligned_cols=109  Identities=26%  Similarity=0.436  Sum_probs=95.6

Q ss_pred             cEEEEEEEEEeeccccCC-CCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEE-ECC
Q 008334          257 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY-DDE  332 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~-d~~  332 (569)
                      .|.|.|+|++|+||...+ ..|.+||||++++.+.+.  .++||+++++++||+|||+|.|.+. .....|.++|| |++
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~  106 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG  106 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence            589999999999999864 568899999999986543  4789999999999999999999998 66779999999 578


Q ss_pred             CCCCCcceEEEEEEccccCCCceeEEEEEccccc
Q 008334          333 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL  366 (569)
Q Consensus       333 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  366 (569)
                      .++++++||++.++|+++..+.....|++|.+..
T Consensus       107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~  140 (146)
T cd04028         107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS  140 (146)
T ss_pred             CCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence            8888999999999999997777788999997543

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.79  E-value=1.2e-18  Score=152.32  Aligned_cols=115  Identities=36%  Similarity=0.666  Sum_probs=101.6

Q ss_pred             eEEEEEEEEeEcCCCCCC--CCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC
Q 008334          444 GVLSVTVILAENLPASDL--MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  521 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~--~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~  521 (569)
                      |.|+|+|++|++|+..+.  .+.+||||+++++.  .+++|++++++.||.|||.|.|.+.+.....|.|+|||++..+.
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~--~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~   78 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA--QRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAG   78 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC--EEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCC
Confidence            679999999999999887  88999999999964  67899999999999999999999987667899999999998754


Q ss_pred             -ceeEEEEEecceeee---cceEeEEEEcCCC-------CCeEEEEEEEE
Q 008334          522 -DYMGRCILTLTRVIL---EGEYTDCFELDGT-------KSGKLKLHLKW  560 (569)
Q Consensus       522 -d~lG~~~i~l~~l~~---~~~~~~w~~L~~~-------~~G~i~l~~~~  560 (569)
                       ++||++.+++.++..   .+...+||+|.+.       .+|+|+|++.|
T Consensus        79 ~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          79 KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence             799999999999873   2345899999765       48999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.79  E-value=4.4e-19  Score=153.93  Aligned_cols=96  Identities=34%  Similarity=0.618  Sum_probs=89.2

Q ss_pred             ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCC
Q 008334          256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  335 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~  335 (569)
                      ..|.|+|+|++|.+|..+|..+++||||++.++   +++.||+++++++||+|||.|.|.+.++ ...|++.|||+|.++
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg---~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs   79 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG---NQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFS   79 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCCCCeEEEEEC---CeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCC
Confidence            579999999999999999988999999999998   8899999999999999999999999987 458999999999999


Q ss_pred             CCcceEEEEEEccccCCCce
Q 008334          336 SSELIGCAQVRLCELEPGKV  355 (569)
Q Consensus       336 ~d~~iG~~~i~l~~l~~~~~  355 (569)
                      +||++|.|+|+|..+.....
T Consensus        80 ~dD~mG~A~I~l~p~~~~~~   99 (168)
T KOG1030|consen   80 SDDFMGEATIPLKPLLEAQK   99 (168)
T ss_pred             cccccceeeeccHHHHHHhh
Confidence            99999999999998876543

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.79  E-value=2.5e-18  Score=149.19  Aligned_cols=122  Identities=21%  Similarity=0.376  Sum_probs=102.1

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCC
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  336 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~  336 (569)
                      ...|+|+|++|+||+..   +.+||||+++++  +.+..+|++ .++.||.|||+|.|.+.....+.+.|.|||++..++
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~   76 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLN--EVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK   76 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEEC--CEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence            35799999999999874   468999999996  235578886 468999999999998765544689999999999999


Q ss_pred             CcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334          337 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       337 d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      |++||.+.+++.++..+...+.|++|.+..  ..+.+..|+|++.++|.+
T Consensus        77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~--~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS--PLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             CCeEEEEEEEHhHccCCCcccEeEEcccCC--CCCCCcCcEEEEEEEEEc
Confidence            999999999999999888889999997642  124567899999999974

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.79  E-value=1.3e-18  Score=150.38  Aligned_cols=115  Identities=35%  Similarity=0.634  Sum_probs=101.6

Q ss_pred             EEEEEEEEEeeccccCCC------CCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEEC
Q 008334          258 GTLEVKLVQAKGLTNKDL------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  331 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~  331 (569)
                      |.|+|+|++|++|+..+.      .|.+||||+++++   ++.++|++++++.||+|||+|.|.+.+...+.|.|+|||+
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~   77 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE   77 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence            789999999999998874      3689999999997   5789999999999999999999999876678999999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      +.. +|++||.+.+++.++..+...+.|++|..        ...|+|++.++|
T Consensus        78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~--------~~~G~~~~~~~~  121 (121)
T cd08391          78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED--------VKSGRLHLKLEW  121 (121)
T ss_pred             CCC-CCCcEEEEEEEHHHhcccCccceEEECcC--------CCCceEEEEEeC
Confidence            987 89999999999999988777889999842        357999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.78  E-value=2.2e-18  Score=149.24  Aligned_cols=105  Identities=28%  Similarity=0.455  Sum_probs=90.5

Q ss_pred             ceEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEEC
Q 008334          443 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDH  516 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~-g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~  516 (569)
                      .+.|.|+|++|+||+..+.. |.+||||++++...   ..+++|++++++.||+|||+|.|.+..  .....|.++|||+
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~   93 (125)
T cd08393          14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR   93 (125)
T ss_pred             CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence            37799999999999999875 88999999999632   245799999999999999999999863  2456899999999


Q ss_pred             CCCCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334          517 DTFGK-DYMGRCILTLTRVILEGEYTDCFELD  547 (569)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (569)
                      +..++ ++||++.++|.++...+....||+|.
T Consensus        94 ~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          94 DSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             CCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            98866 69999999999997777778999974

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.78  E-value=1.1e-18  Score=151.17  Aligned_cols=110  Identities=23%  Similarity=0.428  Sum_probs=95.9

Q ss_pred             cCccEEEEEEEEEeeccccCCCC-CCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEec--CCCcEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI  328 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~v  328 (569)
                      .+..+.|.|+|++|+||+..+.. |.+||||++++.+..  ..+++|++++++.||+|||+|.|.+..  .....|.|+|
T Consensus        11 ~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V   90 (125)
T cd08393          11 DPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV   90 (125)
T ss_pred             ECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence            35568999999999999999875 889999999998654  346899999999999999999999864  3456899999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      ||++..+++++||++.++|.++..+.....|++|+
T Consensus        91 ~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          91 WHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             EeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            99999999999999999999998777778899873

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.78  E-value=2.4e-18  Score=149.39  Aligned_cols=122  Identities=28%  Similarity=0.485  Sum_probs=102.3

Q ss_pred             cEEEEEEEEEeeccccCC-CCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCC
Q 008334          257 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  335 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~  335 (569)
                      .|.|+|+|++|++|+..+ ..+.+||||+++++.. .+.++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~   78 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR   78 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence            489999999999999755 3467899999999732 37799999999999999999999987 45679999999999988


Q ss_pred             CCcceEEEEEEccccCCCceeEE-EEEccccccccCCCcceeEEEEEEEEEe
Q 008334          336 SSELIGCAQVRLCELEPGKVKDV-WLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       336 ~d~~iG~~~i~l~~l~~~~~~~~-~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      +|++||++.+++.++..+...+. |..+      ...++..|+|+++++|.|
T Consensus        79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~------~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          79 KDKLIGTAEFDLSSLLQNPEQENLTKNL------LRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             CCceeEEEEEEHHHhccCccccCcchhh------hcCCccceEEEEEEEeCC
Confidence            99999999999999987665543 3333      235677899999999976

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=2.4e-18  Score=147.94  Aligned_cols=113  Identities=23%  Similarity=0.455  Sum_probs=97.9

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  339 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  339 (569)
                      |.|+|++|++|+..    .+||||+++++   .+..+|++++++.||+|||+|.|.+.+.....|.++|||++.. ++++
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~   73 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDF   73 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCce
Confidence            78999999999877    68999999997   5678999999999999999999998776677999999999987 7899


Q ss_pred             eEEEEEEccccCCC-----ceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          340 IGCAQVRLCELEPG-----KVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       340 iG~~~i~l~~l~~~-----~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      ||++.++++++...     .....|++|.+..    ..+.+|+|++++.|
T Consensus        74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----~~~~~G~i~l~~~~  119 (121)
T cd08378          74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----GGRVGGELMLAVWF  119 (121)
T ss_pred             eeeEEEEhHhCcCCCCCCCCCCcceEEccCCC----CCccceEEEEEEEe
Confidence            99999999998643     2356899997542    25788999999987

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.78  E-value=1.9e-18  Score=149.97  Aligned_cols=110  Identities=35%  Similarity=0.559  Sum_probs=98.5

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEEC
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  331 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~  331 (569)
                      .+..|.|.|+|++|++|+..+..|.+||||++++.+.+.+.++|++++++.||+|||+|.|.+...  ....|.++|||+
T Consensus        12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~   91 (124)
T cd08387          12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF   91 (124)
T ss_pred             CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence            356799999999999999999889999999999976556789999999999999999999998643  356899999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      +..+++++||++.++++++..+...+.|++|+
T Consensus        92 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          92 DQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            99989999999999999998777889999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.78  E-value=2e-18  Score=149.33  Aligned_cols=109  Identities=18%  Similarity=0.348  Sum_probs=95.8

Q ss_pred             cCccEEEEEEEEEeeccccCCC-CCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  328 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v  328 (569)
                      ....|.|.|+|++|+||+..+. .|.+||||++++.+.+  ..++||++++++.||+|||+|.|.+...  ....|.|+|
T Consensus        11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V   90 (125)
T cd04029          11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV   90 (125)
T ss_pred             ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            3567999999999999998765 4789999999998654  3468999999999999999999998643  456899999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCceeEEEEEc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  362 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L  362 (569)
                      ||++..+++++||++.+++.++......+.|++|
T Consensus        91 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l  124 (125)
T cd04029          91 WHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL  124 (125)
T ss_pred             EECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence            9999999999999999999999888888999987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.78  E-value=3.5e-18  Score=148.28  Aligned_cols=105  Identities=27%  Similarity=0.459  Sum_probs=92.6

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  519 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~  519 (569)
                      .+.|.|+|++|++|+..+..|.+||||++++.. +..+++|++++++.||+|||+|.|.+...  ....|.|+|||++..
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~   94 (124)
T cd08387          15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF   94 (124)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC
Confidence            478999999999999999889999999999953 24578999999999999999999998743  356899999999988


Q ss_pred             CC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334          520 GK-DYMGRCILTLTRVILEGEYTDCFELD  547 (569)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (569)
                      ++ ++||++.++++++..++..+.||+|+
T Consensus        95 ~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          95 SRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCceeEEEEEecccccCCCCcceEEECc
Confidence            65 79999999999998777889999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.78  E-value=4.5e-18  Score=147.84  Aligned_cols=116  Identities=24%  Similarity=0.457  Sum_probs=101.6

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-cee
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM  524 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l  524 (569)
                      |.|+|++|++|+.  ..|.+||||+++++....+++|++++++.||+|||.|.|.+.. ....|.|+|||++..++ ++|
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l   77 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL   77 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence            5789999999988  6789999999999753467899999999999999999999963 46789999999998875 799


Q ss_pred             EEEEEecceeeecceEeEEEEcCCC------CCeEEEEEEEEeecC
Q 008334          525 GRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQP  564 (569)
Q Consensus       525 G~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~~  564 (569)
                      |++.+++.++.......+||+|.+.      ..|+|++++.|.+..
T Consensus        78 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~  123 (126)
T cd08678          78 GLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA  123 (126)
T ss_pred             EEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence            9999999999888777899999744      489999999998754

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=2.5e-18  Score=149.77  Aligned_cols=115  Identities=25%  Similarity=0.416  Sum_probs=99.3

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCC---CCEEEEEEEECCCCC-
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL---HDMLIAEVWDHDTFG-  520 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~---~~~l~i~V~d~~~~~-  520 (569)
                      .|+|+|++|++|+..+..|.+||||++++++  .+++|++++++.||.|||.|.|.+.++.   ...|.|+|||++..+ 
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~   78 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG--QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGR   78 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcC
Confidence            3899999999999988889999999999975  6789999999999999999999997542   358999999998874 


Q ss_pred             -CceeEEEEEecceeee-cceEeEEEEcCCC-----CCeEEEEEEEEe
Q 008334          521 -KDYMGRCILTLTRVIL-EGEYTDCFELDGT-----KSGKLKLHLKWM  561 (569)
Q Consensus       521 -~d~lG~~~i~l~~l~~-~~~~~~w~~L~~~-----~~G~i~l~~~~~  561 (569)
                       +++||++.++++++.. +....+||+|+..     .+|+|+|++.+.
T Consensus        79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence             5799999999999873 4556899999743     489999999874

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.78  E-value=4.3e-18  Score=147.28  Aligned_cols=105  Identities=24%  Similarity=0.491  Sum_probs=90.6

Q ss_pred             ceEEEEEEEEeEcCCCCCC-CCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEEC
Q 008334          443 RGVLSVTVILAENLPASDL-MGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  516 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~-~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~  516 (569)
                      .+.|.|+|++|+||+..+. .|.+||||++++...   ..++||++++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus        14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~   93 (125)
T cd04029          14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY   93 (125)
T ss_pred             CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence            4789999999999998764 578999999999632   2467999999999999999999998642  456899999999


Q ss_pred             CCCCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334          517 DTFGK-DYMGRCILTLTRVILEGEYTDCFELD  547 (569)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (569)
                      +..++ ++||++.+++.++......+.||+|.
T Consensus        94 ~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          94 DRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             CCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            98876 69999999999998888889999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.77  E-value=3.1e-18  Score=147.28  Aligned_cols=110  Identities=29%  Similarity=0.489  Sum_probs=96.3

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCcee
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYM  524 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~l  524 (569)
                      +|+|+|++|++|+..    .+||||++++++  .+.+|++++++.||+|||+|.|.+.++....|.++|||++..++++|
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~--~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~l   74 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLGN--YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFL   74 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEECC--ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCcee
Confidence            489999999999887    689999999975  67899999999999999999999987667889999999998766899


Q ss_pred             EEEEEecceeeecc-----eEeEEEEcCCCC----CeEEEEEEEE
Q 008334          525 GRCILTLTRVILEG-----EYTDCFELDGTK----SGKLKLHLKW  560 (569)
Q Consensus       525 G~~~i~l~~l~~~~-----~~~~w~~L~~~~----~G~i~l~~~~  560 (569)
                      |++.++++++....     ...+||+|.+..    .|+|+|.++|
T Consensus        75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             eeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            99999999987543     246999997653    6999999987

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.77  E-value=6.6e-18  Score=152.04  Aligned_cols=123  Identities=27%  Similarity=0.485  Sum_probs=103.8

Q ss_pred             cEEEEEEEEEeeccccCC------------------------------CCCCCCcEEEEEEecCCCCeEEeeecCCCCCC
Q 008334          257 VGTLEVKLVQAKGLTNKD------------------------------LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNP  306 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP  306 (569)
                      .|.|.|+|++|++|+++|                              ..|.+||||+++++  +.+..+|++++++.||
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~~~~rT~v~~~~~nP   83 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GARVARTRVIENSENP   83 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--CeEeeEEEEeCCCCCC
Confidence            599999999999999987                              24668999999997  2345799999999999


Q ss_pred             eeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          307 IWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       307 ~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                      +|||+|.|.+.+. .+.|.|+|||++..+ +++||.+.++++++..+...+.|++|.+..  .+..+..|.|+++++|.
T Consensus        84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~--~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN--GKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC--CCCCCCCCEEEEEEEEC
Confidence            9999999998754 458999999999875 689999999999998888889999997542  23445678999999983

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.77  E-value=7.7e-18  Score=145.95  Aligned_cols=105  Identities=26%  Similarity=0.462  Sum_probs=88.9

Q ss_pred             ceEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEEC
Q 008334          443 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  516 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~-g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~  516 (569)
                      .+.|.|+|++|+||+..+.. |.+||||++++...   ..++||++++++.||+|||+|.|.+...  ....|.+.|||.
T Consensus        14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~   93 (128)
T cd08392          14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS   93 (128)
T ss_pred             CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence            47899999999999998865 89999999999632   2477999999999999999999998642  356899999999


Q ss_pred             CCCCC-ceeEEEEEecceeeec---ceEeEEEEcC
Q 008334          517 DTFGK-DYMGRCILTLTRVILE---GEYTDCFELD  547 (569)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~---~~~~~w~~L~  547 (569)
                      +..++ ++||++.|+|.++...   .....||+|.
T Consensus        94 ~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          94 RTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             CCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            98765 7999999999998554   2568999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.77  E-value=8.6e-18  Score=147.79  Aligned_cols=122  Identities=27%  Similarity=0.474  Sum_probs=102.4

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCC----CCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  334 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~  334 (569)
                      .|+|+|++|++|+..+..|.+||||++++....    ...++|++++++.||+|||+|.|.+... ...|.|+|||++..
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence            378999999999999988999999999997421    1257899999999999999999998643 46899999999999


Q ss_pred             CCCcceEEEEEEccccCCCce------eEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          335 QSSELIGCAQVRLCELEPGKV------KDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       335 ~~d~~iG~~~i~l~~l~~~~~------~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      ++|++||++.+++.++..+..      ...|++|.+.   ...++..|+|++++.|
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~---~~~~~~~G~l~~~~~~  132 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR---SSKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec---CCCCcceeEEEEEEee
Confidence            899999999999999875432      4589999753   2245679999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.77  E-value=8.8e-18  Score=151.22  Aligned_cols=118  Identities=24%  Similarity=0.457  Sum_probs=102.1

Q ss_pred             cceEEEEEEEEeEcCCCCC------------------------------CCCCCCcEEEEEEeCCCeeEeecccCCCCCC
Q 008334          442 IRGVLSVTVILAENLPASD------------------------------LMGKADPYVVLTMKKSETRNKTRVVNDCLNP  491 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~------------------------------~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP  491 (569)
                      -.|.|.|+|++|++|+.+|                              ..|.+||||++++++ .+..+|++++++.||
T Consensus         5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-~~~~rT~v~~~~~nP   83 (158)
T cd04015           5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-ARVARTRVIENSENP   83 (158)
T ss_pred             EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-eEeeEEEEeCCCCCC
Confidence            4599999999999999876                              346689999999975 355799999999999


Q ss_pred             eeceEEEEEeccCCCCEEEEEEEECCCCCCceeEEEEEecceeeecceEeEEEEcCCC------CCeEEEEEEEEe
Q 008334          492 IWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWM  561 (569)
Q Consensus       492 ~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~  561 (569)
                      +|||+|.|.+.+. .+.|.|+|||++..++++||++.++++++..+...++||+|.+.      +.|+|+++++|.
T Consensus        84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          84 VWNESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             ccceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence            9999999998754 46799999999988889999999999999887778999999642      368999999984

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.76  E-value=1.3e-17  Score=143.68  Aligned_cols=118  Identities=33%  Similarity=0.595  Sum_probs=101.9

Q ss_pred             EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCC
Q 008334          258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  337 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d  337 (569)
                      |.|.|+|++|++|+..+..+.+||||++++.   ...++|++++++.||.|||+|.|.+.+. .+.+.|+|||++..+++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~   76 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP   76 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence            7899999999999999988999999999987   4568999999999999999999998653 46899999999988889


Q ss_pred             cceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          338 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       338 ~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      ++||++.+++.++..+.  ..|++|...   ....+..|+|.+++.+
T Consensus        77 ~~iG~~~~~l~~~~~~~--~~~~~l~~~---~~~~~~~G~i~l~~~~  118 (119)
T cd08377          77 EFLGKVAIPLLSIKNGE--RKWYALKDK---KLRTRAKGSILLEMDV  118 (119)
T ss_pred             ceeeEEEEEHHHCCCCC--ceEEECccc---CCCCceeeEEEEEEEe
Confidence            99999999999987654  579998643   2244579999999876

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.76  E-value=6.6e-18  Score=141.79  Aligned_cols=102  Identities=32%  Similarity=0.481  Sum_probs=91.9

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCcee
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYM  524 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~l  524 (569)
                      .|.|+|++|++|+..+..+.+||||++++++  .+++|++++++.||+|||.|.|.+.++..+.|.|+|||++.  +++|
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~i   76 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK--TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSL   76 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECC--EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCcc
Confidence            3789999999999988889999999999986  78899999999999999999999998777899999999887  6799


Q ss_pred             EEEEEecceeeecc--eEeEEEEcCCCC
Q 008334          525 GRCILTLTRVILEG--EYTDCFELDGTK  550 (569)
Q Consensus       525 G~~~i~l~~l~~~~--~~~~w~~L~~~~  550 (569)
                      |++.++|.++....  ..++||+|.+++
T Consensus        77 G~~~i~l~~l~~~~~~~~~~w~~L~~~g  104 (105)
T cd04050          77 GSLTLPLSELLKEPDLTLDQPFPLDNSG  104 (105)
T ss_pred             EEEEEEHHHhhccccceeeeeEecCCCC
Confidence            99999999998654  568999998754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.76  E-value=6.1e-18  Score=146.76  Aligned_cols=109  Identities=32%  Similarity=0.535  Sum_probs=97.5

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEECC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE  332 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~~  332 (569)
                      ...|.|.|+|++|+||+..+..+.+||||++++.+...+.++|++++++.||+|||+|.|.+...  ....|.|+|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d   92 (124)
T cd08385          13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            46789999999999999999889999999999986666788999999999999999999998642  3568999999999


Q ss_pred             CCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          333 GIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       333 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      .++++++||++.+++.++..+...+.|++|.
T Consensus        93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            9989999999999999998888889999873

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.76  E-value=1.8e-17  Score=143.95  Aligned_cols=123  Identities=17%  Similarity=0.282  Sum_probs=103.3

Q ss_pred             ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCC
Q 008334          256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ  335 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~  335 (569)
                      +.++|+|+|++|++|...+..|.+||||++.++   ++.++|++++++.||+|||.|.|.+.+. ...|.|+|||++.. 
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~-   75 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL-   75 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEEC---CEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence            468999999999999999988999999999987   5678999999999999999999988754 56899999999887 


Q ss_pred             CCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334          336 SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       336 ~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      .|++||++.+++.++..  ....|++|.+... ...++..|+|.+++.+.+
T Consensus        76 ~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~-~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          76 CDEFLGQATLSADPNDS--QTLRTLPLRKRGR-DAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             CCCceEEEEEecccCCC--cCceEEEcccCCC-CCCCCCCCEEEEEEEEcc
Confidence            48999999999987643  3446777764332 356788999999998763

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.76  E-value=1.9e-17  Score=143.63  Aligned_cols=115  Identities=18%  Similarity=0.355  Sum_probs=97.3

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-c
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D  522 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d  522 (569)
                      ..|+|+|++|+||+..   +.+||||++++++ .+..+|++ +++.||.|||.|.|.+..+....+.|.|||++..++ +
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~-~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~   78 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNE-VKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS   78 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECC-EeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence            5699999999999874   4789999999964 34568887 468999999999998765544679999999988865 6


Q ss_pred             eeEEEEEecceeeecceEeEEEEcCCC------CCeEEEEEEEEeec
Q 008334          523 YMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQ  563 (569)
Q Consensus       523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~  563 (569)
                      +||++.++|+++..++..+.||+|.+.      ..|+|+|+++|.+.
T Consensus        79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~  125 (126)
T cd08400          79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE  125 (126)
T ss_pred             eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence            999999999999887778999999653      35999999999874

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.76  E-value=1.2e-17  Score=143.75  Aligned_cols=113  Identities=21%  Similarity=0.340  Sum_probs=97.4

Q ss_pred             EEEEEEEeEcCCCCC-CCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ce
Q 008334          446 LSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY  523 (569)
Q Consensus       446 L~v~v~~a~~L~~~~-~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~  523 (569)
                      |.|.|.+|+||+..+ ..|.+||||++++++ ...++|+++++|.||.|||+|.|.+.+. ...|.|.|||++..+. ++
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~-~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~   79 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ-EEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSV   79 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECC-ccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCce
Confidence            678999999999864 467899999999964 4568999999999999999999999853 4689999999998865 79


Q ss_pred             eEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEE
Q 008334          524 MGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW  560 (569)
Q Consensus       524 lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~  560 (569)
                      ||.+.++++++..++..+.||+|+..     ..|+|++++.+
T Consensus        80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            99999999999877777999999753     37999998764

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.76  E-value=4.7e-18  Score=145.92  Aligned_cols=110  Identities=20%  Similarity=0.313  Sum_probs=94.9

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR  327 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~  327 (569)
                      +.+..|.|.|+|++|+||...+..+.+||||++++.|.++   ..+||++++++.||+|||+|.|.+...  ....|.+.
T Consensus         9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~   88 (124)
T cd08680           9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD   88 (124)
T ss_pred             ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence            4466799999999999999988888999999999987663   478999999999999999999998643  56799999


Q ss_pred             EEECCCCCCCcceEEEEEEccccCCC-ceeEEEEEc
Q 008334          328 IYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKL  362 (569)
Q Consensus       328 v~d~~~~~~d~~iG~~~i~l~~l~~~-~~~~~~~~L  362 (569)
                      |||++..+++++||.+.++|+++... .....|++|
T Consensus        89 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          89 VCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             EEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            99999999999999999999999544 346678764

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.76  E-value=3.6e-18  Score=144.86  Aligned_cols=102  Identities=26%  Similarity=0.523  Sum_probs=89.3

Q ss_pred             EEEEEEEEEeeccccCCCC-CCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC---CCcEEEEEEEECCC
Q 008334          258 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG  333 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~v~d~~~  333 (569)
                      |+|+|+|++|++|+..+.. +.+||||++++.+.+...++|+++++++||+|||+|.|.+...   ..+.|.++|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            7899999999999999987 8999999999975445678999999999999999999987643   35689999999999


Q ss_pred             CCCCcceEEEEEEccccCCCceeEEEEEc
Q 008334          334 IQSSELIGCAQVRLCELEPGKVKDVWLKL  362 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~L  362 (569)
                      .++|++||++.+++.++..   ...|+++
T Consensus        81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~  106 (111)
T cd04041          81 FTADDRLGRVEIDLKELIE---DRNWMGR  106 (111)
T ss_pred             CCCCCcceEEEEEHHHHhc---CCCCCcc
Confidence            9899999999999999973   3467765

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.75  E-value=7e-18  Score=149.31  Aligned_cols=106  Identities=24%  Similarity=0.342  Sum_probs=89.8

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEe---------------cCCC
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE---------------DEST  321 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~---------------~~~~  321 (569)
                      .|.|+|++|++|..  ..|.+||||++++.+..  .+.++|++++++.||+|||+|.|.+.               +...
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            47899999999997  46899999999997432  25688999999999999999999985               1233


Q ss_pred             cEEEEEEEECCCCCCCcceEEEEEEccccCCC-ceeEEEEEccccc
Q 008334          322 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKLVKDL  366 (569)
Q Consensus       322 ~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~-~~~~~~~~L~~~~  366 (569)
                      ..|.|+|||++..++|++||++.+++.++..+ .....|++|.+..
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~  124 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE  124 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence            57999999999888999999999999999876 5678999997543

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.75  E-value=1.2e-17  Score=145.24  Aligned_cols=110  Identities=21%  Similarity=0.280  Sum_probs=93.8

Q ss_pred             cCccEEEEEEEEEeeccccCCCC-CCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEE-Eec--CCCcEEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRIY  329 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~--~~~~~L~i~v~  329 (569)
                      ....+.|.|+|++|+||+..+.. |.+||||++++.+...++.||++++++.||+|||+|.|. +..  .....|.++||
T Consensus        12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~   91 (128)
T cd08388          12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL   91 (128)
T ss_pred             ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence            35568999999999999998876 889999999998766677899999999999999999993 432  23457999999


Q ss_pred             ECCCCCCCcceEEEEEEccccCCC--ceeEEEEEcc
Q 008334          330 DDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLV  363 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l~~~--~~~~~~~~L~  363 (569)
                      |++..++|++||++.++|.++...  .....|++++
T Consensus        92 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          92 SFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             EcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            999999999999999999998544  5678899875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.75  E-value=2.2e-17  Score=143.32  Aligned_cols=105  Identities=33%  Similarity=0.525  Sum_probs=91.8

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  519 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~  519 (569)
                      .+.|.|+|++|++|+..+..|.+||||++++.. ...+++|++++++.||+|||.|.|.+...  ....|.|+|||++..
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~   94 (124)
T cd08385          15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF   94 (124)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence            478999999999999998889999999999864 23578999999999999999999998642  346899999999988


Q ss_pred             CC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334          520 GK-DYMGRCILTLTRVILEGEYTDCFELD  547 (569)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (569)
                      ++ ++||++.++++++..+...++|++|+
T Consensus        95 ~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          95 SKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            65 79999999999997777789999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.75  E-value=1.2e-17  Score=142.20  Aligned_cols=104  Identities=21%  Similarity=0.279  Sum_probs=88.9

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-----CCeeEeecccCCCCCCeeceEEEEEecc---CCCCEEEEEEEEC
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKK-----SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDH  516 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-----~~~~~~T~~~~~t~nP~w~e~f~f~v~~---~~~~~l~i~V~d~  516 (569)
                      .|+|+|++|++|+..+ .|.+||||++++.+     ..++++|+++.+|.||+|||+|+|.+..   .....|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            3899999999999887 48999999999842     2235789999999999999999999973   3446799999999


Q ss_pred             CCCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334          517 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      +..++ ++||++.++++++..++....|++|...
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            87765 6999999999999988888999999753

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.75  E-value=1.4e-17  Score=142.64  Aligned_cols=103  Identities=23%  Similarity=0.466  Sum_probs=88.0

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC-CCCEEEEEEEECCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT  518 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~~~~l~i~V~d~~~  518 (569)
                      .+.|.|+|++|+||+..+ .|.+||||++++...   ..+++|++++++.||+|||+|.|.+... ....|.|+|||++.
T Consensus        11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~   89 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS   89 (119)
T ss_pred             CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence            478999999999999988 789999999999642   2467999999999999999999998642 23578999999987


Q ss_pred             CC--CceeEEEEEecceeeecceEeEEEEc
Q 008334          519 FG--KDYMGRCILTLTRVILEGEYTDCFEL  546 (569)
Q Consensus       519 ~~--~d~lG~~~i~l~~l~~~~~~~~w~~L  546 (569)
                      .+  +++||.+.|++.++..+....+||.|
T Consensus        90 ~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          90 KSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            64  36999999999999876667999976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.75  E-value=1.2e-17  Score=144.85  Aligned_cols=109  Identities=20%  Similarity=0.418  Sum_probs=93.5

Q ss_pred             cCccEEEEEEEEEeeccccCCCC-CCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  328 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v  328 (569)
                      ....+.|.|+|++|+||+.++.. |.+||||++++.+..  ..++||++++++.||+|||+|.|.+...  ....|.+.|
T Consensus        11 ~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V   90 (128)
T cd08392          11 NFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV   90 (128)
T ss_pred             eCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence            35678999999999999998865 899999999998754  3467999999999999999999998643  356899999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCC---ceeEEEEEc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPG---KVKDVWLKL  362 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~---~~~~~~~~L  362 (569)
                      ||++.++++++||++.++|.++...   .....|++|
T Consensus        91 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          91 WHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             EeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            9999998999999999999998543   356789987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.75  E-value=3.3e-17  Score=144.11  Aligned_cols=119  Identities=22%  Similarity=0.401  Sum_probs=99.6

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC---------CCcEEEEEEE
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------STQHLVVRIY  329 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---------~~~~L~i~v~  329 (569)
                      .|+|+|++|++|+..|..|.+||||+++++   +++++|++++++.||+|||+|.|.+...         ....|.++||
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~   78 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF   78 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence            489999999999999999999999999997   6788999999999999999999975432         1247999999


Q ss_pred             ECCCCCCCcceEEEEE-EccccC---CCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334          330 DDEGIQSSELIGCAQV-RLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i-~l~~l~---~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      |++..++|++||++.+ ++..+.   .+.....|++|.+      .+...|+|.+++++.+
T Consensus        79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~------~~~~~Geil~~~~~~~  133 (135)
T cd04017          79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK------GGQSAGELLAAFELIE  133 (135)
T ss_pred             eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec------CCCchhheeEEeEEEE
Confidence            9999989999999986 443343   3456789999953      3468999999999986

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.74  E-value=1.1e-17  Score=143.33  Aligned_cols=106  Identities=25%  Similarity=0.471  Sum_probs=90.9

Q ss_pred             ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecC-CCcEEEEEEEECC
Q 008334          256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE  332 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~v~d~~  332 (569)
                      ..|.|.|+|++|+||++.+ .|.+||||++++.+...  .++||++++++.||+|||+|.|.+... ....|.++|||++
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            4589999999999999988 78999999999986543  366899999999999999999998643 2347899999998


Q ss_pred             CCC-CCcceEEEEEEccccCCCceeEEEEEc
Q 008334          333 GIQ-SSELIGCAQVRLCELEPGKVKDVWLKL  362 (569)
Q Consensus       333 ~~~-~d~~iG~~~i~l~~l~~~~~~~~~~~L  362 (569)
                      ... ++++||++.+++.++..+...+.|+.|
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            865 478999999999999877778899875

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.74  E-value=1.5e-17  Score=139.62  Aligned_cols=99  Identities=31%  Similarity=0.410  Sum_probs=89.3

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCc
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  338 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~  338 (569)
                      .|.|+|++|++|+..+..+.+||||+++++   ++.++|+++.++.||+|||+|.|.+.++..+.|.|+|||++.   ++
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~   74 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK   74 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence            378999999999998888999999999998   588999999999999999999999988777799999999886   78


Q ss_pred             ceEEEEEEccccCCC--ceeEEEEEcc
Q 008334          339 LIGCAQVRLCELEPG--KVKDVWLKLV  363 (569)
Q Consensus       339 ~iG~~~i~l~~l~~~--~~~~~~~~L~  363 (569)
                      +||++.++|.++...  ...+.|++|.
T Consensus        75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~  101 (105)
T cd04050          75 SLGSLTLPLSELLKEPDLTLDQPFPLD  101 (105)
T ss_pred             ccEEEEEEHHHhhccccceeeeeEecC
Confidence            999999999998654  3678999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.74  E-value=1.4e-17  Score=144.03  Aligned_cols=110  Identities=30%  Similarity=0.404  Sum_probs=97.2

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEE-Eec--CCCcEEEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRIY  329 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~--~~~~~L~i~v~  329 (569)
                      +....+.|.|+|++|+||++.+..|.+||||++.+.+...++++|+++++ .||+|||+|.|. +..  .....|.++||
T Consensus        11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~   89 (124)
T cd08389          11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY   89 (124)
T ss_pred             ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence            34567899999999999999998889999999998876677889998887 999999999998 542  24668999999


Q ss_pred             ECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      |++..+++++||++.++|+++..+.....|++|+
T Consensus        90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~  123 (124)
T cd08389          90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE  123 (124)
T ss_pred             ECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence            9999999999999999999998888899999985

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.74  E-value=3e-17  Score=141.48  Aligned_cols=118  Identities=26%  Similarity=0.520  Sum_probs=99.4

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  339 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  339 (569)
                      |.|+|++|++|++.+..|.+||||++.++  +...++|+++.++.||+|||.|.|.+.+. .+.|.|+|||++..++|++
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~   78 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV   78 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence            78999999999999999999999999986  23457999999999999999999998643 4689999999999999999


Q ss_pred             eEEEEEEccccCCC-ceeEEEEEccccccccCCCcceeEEEEEEE
Q 008334          340 IGCAQVRLCELEPG-KVKDVWLKLVKDLDVQRDTKYRGQVHLELL  383 (569)
Q Consensus       340 iG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~  383 (569)
                      ||++.+++.++..+ ...+.|++|.+.   ...+...|+|++.+.
T Consensus        79 iG~~~~~~~~~~~~~~~~~~W~~L~~~---~~~~~~~G~i~l~~~  120 (121)
T cd04054          79 IGKVSLTREVISAHPRGIDGWMNLTEV---DPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEEEcHHHhccCCCCCCcEEECeee---CCCCccccEEEEEEE
Confidence            99999999888653 346799999643   223456899988764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.74  E-value=3.7e-17  Score=143.37  Aligned_cols=115  Identities=24%  Similarity=0.458  Sum_probs=100.1

Q ss_pred             cEEEEEEEEEeeccccCCCC----------CCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEE
Q 008334          257 VGTLEVKLVQAKGLTNKDLI----------GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV  326 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i  326 (569)
                      .|.|+|+|++|++|...+..          +.+||||+++++  +.+..+|++++++.||.|||+|.|.+.  ....|.|
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~   78 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL   78 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence            58999999999999988752          578999999997  234578999999999999999999996  3468999


Q ss_pred             EEEECCCCCCCcceEEEEEEccccCC--CceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          327 RIYDDEGIQSSELIGCAQVRLCELEP--GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       327 ~v~d~~~~~~d~~iG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                      +|||++..+++++||.+.++|.++..  +...+.|++|.          +.|.|++.+.|.
T Consensus        79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~l~l~~~~~  129 (132)
T cd04014          79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE----------PQGKLHVKIELK  129 (132)
T ss_pred             EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc----------CCcEEEEEEEEe
Confidence            99999988889999999999999987  56679999983          469999999986

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.74  E-value=2e-17  Score=142.07  Aligned_cols=105  Identities=17%  Similarity=0.235  Sum_probs=89.6

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC----eeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEE
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE----TRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWD  515 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~----~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d  515 (569)
                      ..+.|.|+|++|+||+..+..|.+||||++++-...    .+++|++++++.||+|||+|+|.+..  ..+..|.++|||
T Consensus        12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~   91 (124)
T cd08680          12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS   91 (124)
T ss_pred             CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence            457899999999999998888899999999985322    47899999999999999999999863  256789999999


Q ss_pred             CCCCCC-ceeEEEEEecceeeec-ceEeEEEEc
Q 008334          516 HDTFGK-DYMGRCILTLTRVILE-GEYTDCFEL  546 (569)
Q Consensus       516 ~~~~~~-d~lG~~~i~l~~l~~~-~~~~~w~~L  546 (569)
                      .+..++ ++||.+.|+|.++... +....||.|
T Consensus        92 ~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          92 VGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             CCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            998765 7999999999998554 346889876

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.74  E-value=2.9e-17  Score=142.24  Aligned_cols=112  Identities=29%  Similarity=0.525  Sum_probs=98.3

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ce
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY  523 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~  523 (569)
                      +|+|+|++|++|+..+..+.+||||++++++  .+.+|++++++.||.|||+|.|.+.......|.|+|||++..++ ++
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~   78 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG--QTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDF   78 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECC--EEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcE
Confidence            4899999999999998888999999999965  67899999999999999999999987667789999999998875 79


Q ss_pred             eEEEEEecceeeecceEeEEEEcCC---------CCCeEEEEEE
Q 008334          524 MGRCILTLTRVILEGEYTDCFELDG---------TKSGKLKLHL  558 (569)
Q Consensus       524 lG~~~i~l~~l~~~~~~~~w~~L~~---------~~~G~i~l~~  558 (569)
                      ||++.+++.++...+....||.|..         ...|.|++.+
T Consensus        79 iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          79 LGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             eEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            9999999999977666789999864         2468888876

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.74  E-value=5.2e-17  Score=141.61  Aligned_cols=105  Identities=34%  Similarity=0.507  Sum_probs=90.9

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|+||+..+..+.+||||++++...   ..+++|++++++.||+|||+|.|.+..  .....|.|.|||++
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~   94 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK   94 (127)
T ss_pred             CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence            4789999999999999998899999999999632   357899999999999999999999863  24568999999998


Q ss_pred             CC--C-CceeEEEEEecceeeecceEeEEEEcC
Q 008334          518 TF--G-KDYMGRCILTLTRVILEGEYTDCFELD  547 (569)
Q Consensus       518 ~~--~-~d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (569)
                      ..  + +++||++.+++.++..+....+||+|.
T Consensus        95 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          95 SFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             cccCCCCceEEEEEEecccccccCCccceEECc
Confidence            74  3 479999999999997777779999884

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.74  E-value=3.7e-17  Score=142.11  Aligned_cols=104  Identities=30%  Similarity=0.547  Sum_probs=87.6

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC---CCCEEEEEEEEC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDH  516 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~---~~~~l~i~V~d~  516 (569)
                      .+.|.|+|++|++|+..+..+.+||||++++.+.   ..+++|++++++.||+|||+|.|.+...   ....|.|+|||+
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~   94 (125)
T cd04031          15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY   94 (125)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence            4789999999999999988899999999999642   3577999999999999999999986432   456899999999


Q ss_pred             CCCCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334          517 DTFGK-DYMGRCILTLTRVILEGEYTDCFELD  547 (569)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (569)
                      +..++ ++||++.++|++.. ......||+|+
T Consensus        95 ~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~  125 (125)
T cd04031          95 DRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ  125 (125)
T ss_pred             CCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence            98765 79999999999843 33347899985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.74  E-value=2.5e-17  Score=143.20  Aligned_cols=110  Identities=25%  Similarity=0.421  Sum_probs=96.9

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEec---CCCcEEEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYD  330 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~i~v~d  330 (569)
                      ....+.|.|+|++|++|+..+..+.+||||++++.+.+.+.++|++++++.||+|||+|.|.+..   .....|.++|||
T Consensus        12 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d   91 (125)
T cd08386          12 DFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD   91 (125)
T ss_pred             CCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence            35678999999999999999988999999999997555677899999999999999999997532   234579999999


Q ss_pred             CCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          331 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       331 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      ++..+++++||++.+++.++..+.....|+.|+
T Consensus        92 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          92 YDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             CCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            999889999999999999998888889999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.74  E-value=3.8e-17  Score=141.29  Aligned_cols=118  Identities=26%  Similarity=0.533  Sum_probs=98.0

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCC--C
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS--S  337 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~--d  337 (569)
                      |+|+|++|++|...+..+.+||||+++++  +.+.++|++++++.||.|||+|.|.+..  .+.|.++|||++..++  |
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d   77 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ   77 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence            78999999999999988999999999995  3677899999999999999999999964  6799999999998765  5


Q ss_pred             cceEEEEEEccccCCCc-eeEEEEEccccccccCCCcceeEEEEEE
Q 008334          338 ELIGCAQVRLCELEPGK-VKDVWLKLVKDLDVQRDTKYRGQVHLEL  382 (569)
Q Consensus       338 ~~iG~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~~~G~l~l~l  382 (569)
                      ++||++.+++.++.... ....|++|.+... ...+...|+|.+.+
T Consensus        78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~-~~~~~~~G~v~~~~  122 (123)
T cd08382          78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLKK-SDNLSVRGKIVVSL  122 (123)
T ss_pred             ceEeEEEEEHHHccccCCCccceeEeecCCC-CCCceEeeEEEEEe
Confidence            89999999999986544 3467999854321 23455688888765

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.74  E-value=6.6e-17  Score=140.81  Aligned_cols=116  Identities=31%  Similarity=0.477  Sum_probs=100.7

Q ss_pred             EEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEECCCCCCCcceE
Q 008334          264 LVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQSSELIG  341 (569)
Q Consensus       264 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~~~~~~d~~iG  341 (569)
                      |++|++|+.  ..|.+||||+++++   +..++|++++++.||+|||+|.|.+...  ..+.|.|+|||++..++|++||
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~---~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG   76 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG   76 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEEC---CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence            688999998  67899999999997   5678999999999999999999999754  4678999999999988999999


Q ss_pred             EEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEecC
Q 008334          342 CAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG  388 (569)
Q Consensus       342 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~  388 (569)
                      ++.++++++..+.....|++|...    +.....|+++++++|.|..
T Consensus        77 ~~~~~l~~l~~~~~~~~~~~L~~~----~~~~~~~~l~l~~~~~~~~  119 (127)
T cd08373          77 SATVSLQDLVSEGLLEVTEPLLDS----NGRPTGATISLEVSYQPPD  119 (127)
T ss_pred             EEEEEhhHcccCCceEEEEeCcCC----CCCcccEEEEEEEEEeCCC
Confidence            999999999988888999999642    1233579999999999854

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.74  E-value=6.3e-17  Score=141.90  Aligned_cols=116  Identities=23%  Similarity=0.453  Sum_probs=100.3

Q ss_pred             ceEEEEEEEEeEcCCCCCCC----------CCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEE
Q 008334          443 RGVLSVTVILAENLPASDLM----------GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAE  512 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~----------g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~  512 (569)
                      .|.|+|+|++|++|...+..          |.+||||++++++ ....+|++++++.||.|||+|+|.+.  ....|.|.
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~   79 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-THIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELT   79 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-EEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEE
Confidence            58899999999999987752          6799999999975 34578999999999999999999997  35789999


Q ss_pred             EEECCCCCC-ceeEEEEEecceeee--cceEeEEEEcCCCCCeEEEEEEEEeec
Q 008334          513 VWDHDTFGK-DYMGRCILTLTRVIL--EGEYTDCFELDGTKSGKLKLHLKWMPQ  563 (569)
Q Consensus       513 V~d~~~~~~-d~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~G~i~l~~~~~p~  563 (569)
                      |||++..+. ++||++.++|+++..  ....+.|++|+  +.|+|+++++|...
T Consensus        80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~~  131 (132)
T cd04014          80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKGS  131 (132)
T ss_pred             EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEecC
Confidence            999988765 699999999999887  45569999998  46999999999863

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.73  E-value=6.1e-17  Score=140.92  Aligned_cols=117  Identities=26%  Similarity=0.461  Sum_probs=99.7

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCc
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  338 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~  338 (569)
                      .|+|+|++|++|+..+..+.+||||++.....+.+.++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            57899999999999998899999999997643345789999999999999999999998755678999999999888899


Q ss_pred             ceEEEEEEccccCC---CceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          339 LIGCAQVRLCELEP---GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       339 ~iG~~~i~l~~l~~---~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                      +||++.+++.++..   +...+.|++|.          ..|.+++.+.+.
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~----------~~g~i~l~~~~~  121 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLD----------TQGRLLLRVSME  121 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcC----------CCCeEEEEEEEe
Confidence            99999999987632   44678999983          258898888875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.73  E-value=9.8e-17  Score=139.43  Aligned_cols=105  Identities=31%  Similarity=0.482  Sum_probs=87.7

Q ss_pred             ceEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEE-ec--cCCCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFV-VE--DGLHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~-g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~-v~--~~~~~~l~i~V~d~~  517 (569)
                      .+.|+|+|++|++|+..+.. |.+||||++++.. ...+.||++++++.||+|||+|.|. +.  +.....|.++|||++
T Consensus        15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d   94 (128)
T cd08388          15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD   94 (128)
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence            47899999999999998875 8899999999963 2356799999999999999999994 43  223457999999998


Q ss_pred             CCCC-ceeEEEEEecceeeec--ceEeEEEEcC
Q 008334          518 TFGK-DYMGRCILTLTRVILE--GEYTDCFELD  547 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~--~~~~~w~~L~  547 (569)
                      ..++ ++||++.++|+++...  ++...|.+|+
T Consensus        95 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          95 RYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             CCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            8765 7999999999998655  5678898875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.73  E-value=2.5e-17  Score=138.30  Aligned_cols=94  Identities=15%  Similarity=0.294  Sum_probs=82.2

Q ss_pred             EEEEEEEEEeeccccCCCC----CCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCC-CcEEEEEEEECC
Q 008334          258 GTLEVKLVQAKGLTNKDLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDE  332 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~----g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-~~~L~i~v~d~~  332 (569)
                      |+|.|+|++|++|+..+..    +.+||||+++++   ++.+||++++++.||+|||.|.|.+.+.. ...|.|+|||++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~---~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d   77 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG---RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD   77 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC---CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence            7899999999999987632    358999999996   67889999999999999999999987543 357999999999


Q ss_pred             CCCCCcceEEEEEEccccCCCc
Q 008334          333 GIQSSELIGCAQVRLCELEPGK  354 (569)
Q Consensus       333 ~~~~d~~iG~~~i~l~~l~~~~  354 (569)
                      ..++|++||++.++|+++..+.
T Consensus        78 ~~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          78 KFSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCCCCcceEEEEEEHHHHHhhC
Confidence            9999999999999999986543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.73  E-value=4.5e-17  Score=141.97  Aligned_cols=109  Identities=26%  Similarity=0.437  Sum_probs=95.5

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  329 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~  329 (569)
                      ....+.|+|+|++|+||+..+..+.+||||++++.+.+  ..+++|++++++.||+|||+|.|.+...  ....|.+.||
T Consensus        12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~   91 (127)
T cd04030          12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK   91 (127)
T ss_pred             eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence            35678999999999999999988999999999997543  4678999999999999999999998543  3568999999


Q ss_pred             ECCCC--CCCcceEEEEEEccccCCCceeEEEEEc
Q 008334          330 DDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL  362 (569)
Q Consensus       330 d~~~~--~~d~~iG~~~i~l~~l~~~~~~~~~~~L  362 (569)
                      |++..  +++++||++.+++.++..+.....|++|
T Consensus        92 ~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  126 (127)
T cd04030          92 NSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL  126 (127)
T ss_pred             ECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence            99875  6899999999999999887788899987

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.72  E-value=1.4e-16  Score=138.34  Aligned_cols=117  Identities=21%  Similarity=0.346  Sum_probs=101.0

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCce
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY  523 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~  523 (569)
                      ++|+|+|++|++|...+..|.+||||++++++  ..++|++++++.||+|||.|.|.+.+. ...|.|+|||++..++++
T Consensus         3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~   79 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG--ESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEF   79 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCCCCcCccEEEEECC--EEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCc
Confidence            68999999999999998889999999999875  678999999999999999999988754 678999999999887789


Q ss_pred             eEEEEEecceeeecceEeEEEEcC-------CCCCeEEEEEEEEeecCC
Q 008334          524 MGRCILTLTRVILEGEYTDCFELD-------GTKSGKLKLHLKWMPQPI  565 (569)
Q Consensus       524 lG~~~i~l~~l~~~~~~~~w~~L~-------~~~~G~i~l~~~~~p~~~  565 (569)
                      ||.+.+++.++.  ....++|+|.       +...|.|.+++...+.++
T Consensus        80 lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~~  126 (126)
T cd04046          80 LGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDDLT  126 (126)
T ss_pred             eEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEccccC
Confidence            999999998753  3446788883       235899999998887654

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.72  E-value=5.9e-17  Score=140.41  Aligned_cols=110  Identities=25%  Similarity=0.361  Sum_probs=97.2

Q ss_pred             cCccEEEEEEEEEeeccccCC-CCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  330 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d  330 (569)
                      ....+.|.|+|++|++|+..+ ..+.+||||++++.+.+.+.++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d   89 (123)
T cd08390          10 DLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD   89 (123)
T ss_pred             CCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence            356789999999999999988 678899999999976556778999999999999999999998643  24579999999


Q ss_pred             CCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          331 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       331 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      ++..+++++||++.++|.++........|++|.
T Consensus        90 ~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          90 VDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             CCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            999888999999999999998888889999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.72  E-value=3.5e-17  Score=141.84  Aligned_cols=108  Identities=20%  Similarity=0.458  Sum_probs=94.3

Q ss_pred             CccEEEEEEEEEeeccccCC-CCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEE
Q 008334          255 KPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  329 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~  329 (569)
                      ...|.|.|+|++|+||+..+ ..+.+||||++++.+.+.  .+++|++++++.||+|||+|.|.+...  ....|.|+||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            56789999999999999988 678999999999975433  568999999999999999999998643  3568999999


Q ss_pred             ECCCCCCCcceEEEEEEccccCCCceeEEEEEc
Q 008334          330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  362 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L  362 (569)
                      |++..+++++||++.+++.++..+...+.|++|
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            999988999999999999999777778899986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.72  E-value=7.9e-17  Score=139.64  Aligned_cols=105  Identities=26%  Similarity=0.522  Sum_probs=90.0

Q ss_pred             cceEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEE
Q 008334          442 IRGVLSVTVILAENLPASD-LMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWD  515 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~-~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d  515 (569)
                      ..+.|.|+|++|+||+..+ ..+.+||||++++...   ..+++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d   91 (123)
T cd08521          12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWH   91 (123)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence            3478999999999999988 7789999999998532   1468999999999999999999998642  35689999999


Q ss_pred             CCCCCC-ceeEEEEEecceeeecceEeEEEEc
Q 008334          516 HDTFGK-DYMGRCILTLTRVILEGEYTDCFEL  546 (569)
Q Consensus       516 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L  546 (569)
                      ++..++ ++||++.++|.++..+.....||+|
T Consensus        92 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          92 HDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             CCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            998766 7999999999999777777999987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.72  E-value=9e-17  Score=145.17  Aligned_cols=108  Identities=32%  Similarity=0.473  Sum_probs=92.5

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEecc---CCCCEEEEEEEE
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWD  515 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~---~~~~~l~i~V~d  515 (569)
                      ..|.|.|+|++|++|+..+..|.+||||++++..   +..+++|++++++.||.|||.|.|.+..   .....|.|+|||
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d  104 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD  104 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence            5689999999999999999889999999999853   2357899999999999999999998532   234579999999


Q ss_pred             CCCCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334          516 HDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       516 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      ++..++ ++||++.+++.++...+....|+.+.+.
T Consensus       105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~  139 (162)
T cd04020         105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE  139 (162)
T ss_pred             CCCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence            998875 7999999999998877777889888653

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.72  E-value=8.9e-17  Score=139.54  Aligned_cols=118  Identities=31%  Similarity=0.558  Sum_probs=99.2

Q ss_pred             eEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-
Q 008334          444 GVLSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-  521 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~-~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-  521 (569)
                      |.|+|+|++|++|+..+ ..+.+||||++++++....++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+. 
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCCCC
Confidence            78999999999999655 456789999999974236789999999999999999999988 457789999999988755 


Q ss_pred             ceeEEEEEecceeeecceEeE-EEEc--CCCCCeEEEEEEEEee
Q 008334          522 DYMGRCILTLTRVILEGEYTD-CFEL--DGTKSGKLKLHLKWMP  562 (569)
Q Consensus       522 d~lG~~~i~l~~l~~~~~~~~-w~~L--~~~~~G~i~l~~~~~p  562 (569)
                      ++||++.+++.++........ ++.+  .++..|+|+++++|.|
T Consensus        81 ~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          81 KLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             ceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence            799999999999987765543 3433  4567899999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.72  E-value=9.2e-17  Score=138.42  Aligned_cols=112  Identities=26%  Similarity=0.467  Sum_probs=96.2

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-cee
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM  524 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l  524 (569)
                      |.|+|++|++|+..+..|.+||||++++++ ....+|++++++.||.|||.|.|.+.. ....|.|+|||++..+. ++|
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~i   79 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN-EVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDVI   79 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECC-EeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCEE
Confidence            789999999999999999999999999964 345799999999999999999999874 34689999999998876 799


Q ss_pred             EEEEEecceeeecc-eEeEEEEcCCC-----CCeEEEEEEE
Q 008334          525 GRCILTLTRVILEG-EYTDCFELDGT-----KSGKLKLHLK  559 (569)
Q Consensus       525 G~~~i~l~~l~~~~-~~~~w~~L~~~-----~~G~i~l~~~  559 (569)
                      |++.+++.++.... ..++|++|++.     ..|+|++++.
T Consensus        80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            99999999886543 36899999763     3799998864

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.72  E-value=5.1e-17  Score=137.72  Aligned_cols=102  Identities=25%  Similarity=0.411  Sum_probs=90.1

Q ss_pred             CCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCceeEEEEEecceeeec-ce
Q 008334          461 LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE-GE  539 (569)
Q Consensus       461 ~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~-~~  539 (569)
                      .+|.+||||++++++ ....+|++++++.||.|||.|.|.+.+.....|.|+|||++..++++||++.++|+++... ..
T Consensus         9 ~~G~~dPYv~v~v~~-~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~   87 (111)
T cd04052           9 KTGLLSPYAELYLNG-KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV   87 (111)
T ss_pred             cCCCCCceEEEEECC-EEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence            578899999999975 3567999999999999999999999877778899999999988558999999999998654 44


Q ss_pred             EeEEEEcCCCCCeEEEEEEEEeec
Q 008334          540 YTDCFELDGTKSGKLKLHLKWMPQ  563 (569)
Q Consensus       540 ~~~w~~L~~~~~G~i~l~~~~~p~  563 (569)
                      ..+||+|.+.+.|+|+++++|.|+
T Consensus        88 ~~~w~~L~~~~~G~i~~~~~~~p~  111 (111)
T cd04052          88 GQQWFPLSGNGQGRIRISALWKPV  111 (111)
T ss_pred             cceeEECCCCCCCEEEEEEEEecC
Confidence            589999998889999999999985

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.71  E-value=2.9e-17  Score=142.66  Aligned_cols=93  Identities=40%  Similarity=0.699  Sum_probs=85.0

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  521 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~  521 (569)
                      ..|.|+|.|.+|.+|...|..+++||||.+.+++  ++.+|+++++++||+|||.|+|.+.++ ...|.++|||+|.++.
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~--q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~   80 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN--QKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS   80 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCCCCeEEEEECC--eeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence            3589999999999999999889999999999986  788999999999999999999999986 6789999999999976


Q ss_pred             -ceeEEEEEecceeeec
Q 008334          522 -DYMGRCILTLTRVILE  537 (569)
Q Consensus       522 -d~lG~~~i~l~~l~~~  537 (569)
                       |+||.++|+|..+...
T Consensus        81 dD~mG~A~I~l~p~~~~   97 (168)
T KOG1030|consen   81 DDFMGEATIPLKPLLEA   97 (168)
T ss_pred             ccccceeeeccHHHHHH
Confidence             7999999999876543

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.71  E-value=1.4e-16  Score=137.67  Aligned_cols=105  Identities=31%  Similarity=0.429  Sum_probs=90.2

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEE-ecc--CCCCEEEEEEEECCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFV-VED--GLHDMLIAEVWDHDT  518 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~-v~~--~~~~~l~i~V~d~~~  518 (569)
                      .+.|.|+|++|+||+..+..|..||||++.+.. +..+++|+++++ .||+|||+|.|. +..  ..+..|.++|||++.
T Consensus        15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~   93 (124)
T cd08389          15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER   93 (124)
T ss_pred             CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC
Confidence            478999999999999998888999999988743 346789999887 999999999998 542  246789999999998


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEEcCC
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFELDG  548 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~  548 (569)
                      .++ ++||++.|+|+++..++....||+|+.
T Consensus        94 ~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          94 MRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             cccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            875 799999999999987778899999873

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.71  E-value=1.4e-16  Score=140.10  Aligned_cols=116  Identities=27%  Similarity=0.521  Sum_probs=98.4

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC-----CeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCC
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKKS-----ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF  519 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~-----~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~  519 (569)
                      .|+|+|++|++|+..+..|.+||||++++++.     ....+|+++++|.||.|||+|.|.+.. ....|.++|||++..
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCC
Confidence            37899999999999998899999999999753     125689999999999999999999874 356799999999988


Q ss_pred             CC-ceeEEEEEecceeeecce------EeEEEEcCCC-----CCeEEEEEEEEe
Q 008334          520 GK-DYMGRCILTLTRVILEGE------YTDCFELDGT-----KSGKLKLHLKWM  561 (569)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~------~~~w~~L~~~-----~~G~i~l~~~~~  561 (569)
                      ++ ++||++.+++.++.....      ...||+|++.     ..|+|++++.|.
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence            65 799999999999886542      3699999742     489999999873

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.71  E-value=6.8e-17  Score=140.46  Aligned_cols=107  Identities=24%  Similarity=0.447  Sum_probs=90.7

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC---CCcEEEEEEE
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIY  329 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~v~  329 (569)
                      ...|.|.|+|++|++|...+..+.+||||++++.+.+  ..+++|++++++.||+|||+|.|.+...   ....|.|+||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~   92 (125)
T cd04031          13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence            4568999999999999999888999999999997432  3578899999999999999999986432   4568999999


Q ss_pred             ECCCCCCCcceEEEEEEccccCCCceeEEEEEc
Q 008334          330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  362 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L  362 (569)
                      |++..+++++||++.+++++. .......|++|
T Consensus        93 d~~~~~~~~~iG~~~i~l~~~-~~~~~~~W~~L  124 (125)
T cd04031          93 DYDRDGENDFLGEVVIDLADA-LLDDEPHWYPL  124 (125)
T ss_pred             eCCCCCCCcEeeEEEEecccc-cccCCcceEEC
Confidence            999988999999999999983 23335689987

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.71  E-value=5.5e-17  Score=137.36  Aligned_cols=101  Identities=27%  Similarity=0.472  Sum_probs=89.0

Q ss_pred             EEEEEEEeeccccCCC-CCCCCcEEEEEEecCCCCeEEeeecCCCCCCee-ccEEEEEEecC--CCcEEEEEEEECCCCC
Q 008334          260 LEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIW-NEHFEFIVEDE--STQHLVVRIYDDEGIQ  335 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~--~~~~L~i~v~d~~~~~  335 (569)
                      |.|+|++|++|+..+. .|.+||||+++++   .+++||++++++.||+| ||+|.|.+...  ..+.|.|+|||++..+
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~   77 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS   77 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence            5799999999998874 6889999999997   47899999999999999 99999998754  3468999999999998


Q ss_pred             CCcceEEEEEEccccCC---CceeEEEEEcc
Q 008334          336 SSELIGCAQVRLCELEP---GKVKDVWLKLV  363 (569)
Q Consensus       336 ~d~~iG~~~i~l~~l~~---~~~~~~~~~L~  363 (569)
                      ++++||++.+++.++..   +...+.|++|.
T Consensus        78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            99999999999999976   34578899985

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=1.5e-16  Score=138.34  Aligned_cols=115  Identities=32%  Similarity=0.642  Sum_probs=96.4

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC----
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI----  334 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~----  334 (569)
                      .|+|+|++|++|+..|..|.+||||+++++   .+.++|++++++.||+|||+|.|.+... ...|.|+|||++..    
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~   77 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR   77 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence            589999999999999988999999999986   5678999999999999999999988644 45899999999852    


Q ss_pred             -------CCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEE
Q 008334          335 -------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLEL  382 (569)
Q Consensus       335 -------~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l  382 (569)
                             +.+++||++.+++.++..  ..+.|+.|.+..   .....+|+|.+.+
T Consensus        78 ~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~---~~~~~~G~i~~~~  127 (127)
T cd04027          78 LKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRT---DKSAVSGAIRLHI  127 (127)
T ss_pred             cceeccccCCCcceEEEEEhHHccC--CCCeEEECccCC---CCCcEeEEEEEEC
Confidence                   468999999999998753  356899997542   3446789998863

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.71  E-value=2.6e-16  Score=135.54  Aligned_cols=112  Identities=33%  Similarity=0.589  Sum_probs=97.0

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-c
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D  522 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d  522 (569)
                      |.|.|+|++|++|+..+..+.+||||++++++  ...+|++++++.||.|||+|.|.+.+. ...+.|+|||++..++ +
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~   77 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN--ARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPE   77 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC--EeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCc
Confidence            67999999999999999889999999999965  567999999999999999999998753 5789999999988654 7


Q ss_pred             eeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEE
Q 008334          523 YMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW  560 (569)
Q Consensus       523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~  560 (569)
                      +||++.+++.++..+  ...||+|...     ..|+|++++++
T Consensus        78 ~iG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          78 FLGKVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             eeeEEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence            999999999998644  3689999643     48999999886

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.71  E-value=2.7e-16  Score=136.83  Aligned_cols=116  Identities=33%  Similarity=0.510  Sum_probs=98.7

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC-CeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-c
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D  522 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~-~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d  522 (569)
                      .|+|+|++|++|+..+..+.+||||++++++. ...++|++++++.||.|||+|.|.+.......|.|+|||++..++ +
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            58899999999999988899999999998643 356899999999999999999999987656789999999998765 6


Q ss_pred             eeEEEEEecceeeec---ceEeEEEEcCCCCCeEEEEEEEEee
Q 008334          523 YMGRCILTLTRVILE---GEYTDCFELDGTKSGKLKLHLKWMP  562 (569)
Q Consensus       523 ~lG~~~i~l~~l~~~---~~~~~w~~L~~~~~G~i~l~~~~~p  562 (569)
                      +||++.++|.++...   .....|++|.+  .|++++++.+.-
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~~  122 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSMEG  122 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEee
Confidence            999999999876443   24578999976  699999888753

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.71  E-value=8.3e-17  Score=142.86  Aligned_cols=103  Identities=39%  Similarity=0.712  Sum_probs=90.5

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--------------------------CCeEEeeecCCCCCCee
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--------------------------EKTKKSKTINNDLNPIW  308 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--------------------------~~~~kT~~~~~t~nP~w  308 (569)
                      ++.+.|.|+|++|++|.+.|..|.+||||++.+.+..                          .+.++|++++++.||+|
T Consensus        25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W  104 (153)
T cd08676          25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW  104 (153)
T ss_pred             CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence            6789999999999999999999999999999996421                          13578999999999999


Q ss_pred             ccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEc
Q 008334          309 NEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL  362 (569)
Q Consensus       309 ne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L  362 (569)
                      ||+|.|.+.+...+.|.|+|||++    +++||++.++++++.. ...+.|++|
T Consensus       105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            999999998766779999999998    7899999999999984 446899876

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.71  E-value=1.7e-16  Score=137.86  Aligned_cols=105  Identities=32%  Similarity=0.478  Sum_probs=90.3

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEecc---CCCCEEEEEEEECCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDHDT  518 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~---~~~~~l~i~V~d~~~  518 (569)
                      .+.|.|+|++|++|+..+..+.+||||++++.. +..+.+|++++++.||.|||+|.|.+..   .....|.++|||++.
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~   94 (125)
T cd08386          15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR   94 (125)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence            477999999999999998889999999999842 2356899999999999999999997531   234679999999998


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFELD  547 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (569)
                      .++ ++||++.++++++........|+.|.
T Consensus        95 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          95 FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            865 79999999999998777789999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.70  E-value=9.6e-17  Score=142.06  Aligned_cols=102  Identities=27%  Similarity=0.421  Sum_probs=86.3

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEec---------------cCCC
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVE---------------DGLH  506 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~---------------~~~~  506 (569)
                      .|.|+|++|++|+.  .+|.+||||++++.+.   ..+++|+++++|.||+|||+|.|.+.               +...
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            37899999999998  5689999999999752   24679999999999999999999995               1223


Q ss_pred             CEEEEEEEECCCCCC-ceeEEEEEecceeeec-ceEeEEEEcCC
Q 008334          507 DMLIAEVWDHDTFGK-DYMGRCILTLTRVILE-GEYTDCFELDG  548 (569)
Q Consensus       507 ~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~-~~~~~w~~L~~  548 (569)
                      ..|.|+|||++..++ ++||++.|++.++... .....||+|..
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~  122 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP  122 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence            579999999998755 7999999999998876 56789999964

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.70  E-value=2.9e-16  Score=138.10  Aligned_cols=118  Identities=25%  Similarity=0.464  Sum_probs=97.0

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccC---------CCCEEEEEEEE
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG---------LHDMLIAEVWD  515 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~---------~~~~l~i~V~d  515 (569)
                      +|+|+|++|++|+..+..|.+||||++++++  .+++|+++++|.||.|||.|.|.+...         ....|.|+|||
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d   79 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN--QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD   79 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECC--eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence            6899999999999999999999999999975  678999999999999999999975321         12579999999


Q ss_pred             CCCCCC-ceeEEEEE-ecceeeec---ceEeEEEEcCC--CCCeEEEEEEEEeecC
Q 008334          516 HDTFGK-DYMGRCIL-TLTRVILE---GEYTDCFELDG--TKSGKLKLHLKWMPQP  564 (569)
Q Consensus       516 ~~~~~~-d~lG~~~i-~l~~l~~~---~~~~~w~~L~~--~~~G~i~l~~~~~p~~  564 (569)
                      ++..++ ++||++.+ ++..+...   ....+||+|..  ...|+|.+++++.+..
T Consensus        80 ~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~~  135 (135)
T cd04017          80 QDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEVT  135 (135)
T ss_pred             CcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEeC
Confidence            998876 69999997 44444332   34579999973  4589999999998863

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.70  E-value=1.5e-16  Score=134.60  Aligned_cols=100  Identities=22%  Similarity=0.373  Sum_probs=84.7

Q ss_pred             EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCC
Q 008334          258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  337 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d  337 (569)
                      |.|.|+|++|++|...+   ..||||++.++   +++.+|++.++ .||.|||+|.|.+.+... .|.|+|||++.. .|
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g---~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~-~L~v~V~dkd~~-~D   72 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQ---NVKSTTIAVRG-SQPCWEQDFMFEINRLDL-GLVIELWNKGLI-WD   72 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEEC---CEEeEeeECCC-CCCceeeEEEEEEcCCCC-EEEEEEEeCCCc-CC
Confidence            68999999999997644   45899999997   67788998877 599999999999976544 599999999965 89


Q ss_pred             cceEEEEEEccccCCCcee--EEEEEccccc
Q 008334          338 ELIGCAQVRLCELEPGKVK--DVWLKLVKDL  366 (569)
Q Consensus       338 ~~iG~~~i~l~~l~~~~~~--~~~~~L~~~~  366 (569)
                      ++||++.++|.++..+...  ..|++|.+..
T Consensus        73 D~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~  103 (127)
T cd08394          73 TLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV  103 (127)
T ss_pred             CceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence            9999999999999755444  7999998544

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.70  E-value=1.1e-16  Score=139.07  Aligned_cols=115  Identities=27%  Similarity=0.487  Sum_probs=97.3

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecC-CCCCCeeccEEEEEEecCC----CcEEEEEEEECCC
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEG  333 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~----~~~L~i~v~d~~~  333 (569)
                      +|+|+|++|++|+..+..+.+||||++++++  .+.++|+++. ++.||.|||.|.|.+.+..    ...|.|+|||++.
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~   78 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP   78 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence            4789999999999998889999999999972  3678888874 6899999999999997663    5789999999998


Q ss_pred             CCCCcceEEEEEEccccCCCce-----eEEEEEccccccccCCCcceeEEEE
Q 008334          334 IQSSELIGCAQVRLCELEPGKV-----KDVWLKLVKDLDVQRDTKYRGQVHL  380 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~~~G~l~l  380 (569)
                      .++|++||++.+++.++..+..     ...|++|.+     ..++..|.|++
T Consensus        79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~-----~~g~~~G~~~~  125 (125)
T cd04051          79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRR-----PSGKPQGVLNF  125 (125)
T ss_pred             CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeEC-----CCCCcCeEEeC
Confidence            8889999999999999976543     478999864     24778888864

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.70  E-value=3.9e-16  Score=135.25  Aligned_cols=106  Identities=25%  Similarity=0.355  Sum_probs=91.5

Q ss_pred             ceEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCC
Q 008334          443 RGVLSVTVILAENLPASD-LMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDT  518 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~-~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~  518 (569)
                      .+.|.|+|++|++|+..+ ..+.+||||++++.. .....+|++++++.||+|||.|.|.+...  ....|.|+|||++.
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~   92 (123)
T cd08390          13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR   92 (123)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence            478999999999999988 678899999999853 23567899999999999999999998643  34579999999988


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEEcCC
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFELDG  548 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~  548 (569)
                      .++ ++||++.++|+++........|++|+.
T Consensus        93 ~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          93 FSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             CCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            765 799999999999988888899999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.70  E-value=8e-17  Score=140.66  Aligned_cols=91  Identities=30%  Similarity=0.448  Sum_probs=77.9

Q ss_pred             ceEEEEEEEEeEcCCCCCC--CCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEE
Q 008334          443 RGVLSVTVILAENLPASDL--MGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWD  515 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~--~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d  515 (569)
                      .+.|.|.|++|+||+..+.  .+.+||||++++....   .+.||++++++.||+|||.|.|.+...  .+..|.|+|||
T Consensus        14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d   93 (138)
T cd08407          14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN   93 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence            4789999999999999873  3558999999996532   367999999999999999999999742  45689999999


Q ss_pred             CCCCCC-ceeEEEEEecce
Q 008334          516 HDTFGK-DYMGRCILTLTR  533 (569)
Q Consensus       516 ~~~~~~-d~lG~~~i~l~~  533 (569)
                      ++..++ ++||++.+++..
T Consensus        94 ~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          94 QDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             CCCCcCcceeceEEecCcC
Confidence            999876 799999999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.70  E-value=1.7e-16  Score=134.25  Aligned_cols=98  Identities=26%  Similarity=0.396  Sum_probs=84.3

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCce
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY  523 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~  523 (569)
                      +.|.|+|++|++|+..+   ..||||++++++  .+.+|++.++ .||.|||.|.|.+.+. ...|.|+|||++..++|+
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~--~k~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~~DD~   74 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN--VKSTTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLIWDTL   74 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECC--EEeEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCcCCCc
Confidence            67999999999997643   468999999975  7789999877 5999999999999864 445999999999887899


Q ss_pred             eEEEEEecceeeecceE--eEEEEcCC
Q 008334          524 MGRCILTLTRVILEGEY--TDCFELDG  548 (569)
Q Consensus       524 lG~~~i~l~~l~~~~~~--~~w~~L~~  548 (569)
                      ||++.|+|+++......  .+||+|..
T Consensus        75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          75 VGTVWIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             eEEEEEEhHHcccCCCCCCCccEecCh
Confidence            99999999999876544  89999974

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.70  E-value=6.8e-17  Score=141.25  Aligned_cols=103  Identities=25%  Similarity=0.253  Sum_probs=84.2

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|+||+..+..|.+||||++++....   .+.||++++++.||+|||+|.|.+..  ..+..|.|+|||++
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d   93 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST   93 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence            36799999999999999888999999999995322   36789999999999999999999864  35678999999999


Q ss_pred             CCCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334          518 TFGK-DYMGRCILTLTRVILEGEYTDCFELD  547 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (569)
                      ..++ ++||++.|+...  .+.+.++|..+.
T Consensus        94 ~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml  122 (136)
T cd08406          94 EDGKTPNVGHVIIGPAA--SGMGLSHWNQML  122 (136)
T ss_pred             CCCCCCeeEEEEECCCC--CChhHHHHHHHH
Confidence            8766 799999998764  233345565543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.70  E-value=3.3e-16  Score=134.01  Aligned_cols=113  Identities=35%  Similarity=0.559  Sum_probs=97.6

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  339 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  339 (569)
                      |+|+|++|++|+..+..+.+||||++++.  +.+.++|+++.++.||+|||+|.|.+.....+.+.|+|||++..+++++
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~   78 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL   78 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence            57999999999998888899999999996  2456899999999999999999999986666789999999999888999


Q ss_pred             eEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEE
Q 008334          340 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVH  379 (569)
Q Consensus       340 iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~  379 (569)
                      ||++.+++.++..+...+.|++|.+     +++...|.+.
T Consensus        79 iG~~~~~l~~l~~~~~~~~~~~L~~-----~g~~~~~~~~  113 (115)
T cd04040          79 LGSAYIDLSDLEPEETTELTLPLDG-----QGGGKLGAVF  113 (115)
T ss_pred             eEEEEEEHHHcCCCCcEEEEEECcC-----CCCccCceEE
Confidence            9999999999988888899999863     2444556554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.69  E-value=1.7e-16  Score=143.40  Aligned_cols=109  Identities=21%  Similarity=0.380  Sum_probs=94.7

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecC--CCCeEEeeecCCCCCCeeccEEEEEEec---CCCcEEEEEEE
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY  329 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~i~v~  329 (569)
                      .+.|.|.|+|++|+||+..+..+.+||||++++.+.  +..++||++++++.||+|||+|.|.+..   .....|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            478999999999999999998899999999999643  2457899999999999999999998532   23457999999


Q ss_pred             ECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      |++.+++|++||++.+++.++......+.|+.+.
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~  137 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST  137 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence            9999988999999999999998777778898874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.68  E-value=7.5e-16  Score=134.15  Aligned_cols=111  Identities=28%  Similarity=0.505  Sum_probs=97.1

Q ss_pred             EEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCCCC-ceeEE
Q 008334          450 VILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGR  526 (569)
Q Consensus       450 v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~~~-d~lG~  526 (569)
                      |++|++|+.  ..|.+||||++++++  .+++|++++++.||+|||.|.|.+...  ....|.|+|||++..++ ++||+
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~--~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~   77 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRG--VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGS   77 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECC--EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEE
Confidence            689999998  578899999999975  578999999999999999999999754  46789999999998765 79999


Q ss_pred             EEEecceeeecceEeEEEEcCCC----CCeEEEEEEEEeecC
Q 008334          527 CILTLTRVILEGEYTDCFELDGT----KSGKLKLHLKWMPQP  564 (569)
Q Consensus       527 ~~i~l~~l~~~~~~~~w~~L~~~----~~G~i~l~~~~~p~~  564 (569)
                      +.++++++..++....|++|.+.    ..|+|++++.|.|.-
T Consensus        78 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~  119 (127)
T cd08373          78 ATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPD  119 (127)
T ss_pred             EEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCC
Confidence            99999999988888999999632    368999999999853

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.68  E-value=9e-16  Score=135.91  Aligned_cols=120  Identities=23%  Similarity=0.346  Sum_probs=96.5

Q ss_pred             EEEEEEeec--cccCCCCCCCCcEEEEEEe-c-CCCCeEEeeecCCCCCCeeccEEEEEEecC--------CCcEEEEEE
Q 008334          261 EVKLVQAKG--LTNKDLIGKSDPYAVLFVR-P-LPEKTKKSKTINNDLNPIWNEHFEFIVEDE--------STQHLVVRI  328 (569)
Q Consensus       261 ~V~v~~a~~--L~~~d~~g~~dpyv~v~~~-~-~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--------~~~~L~i~v  328 (569)
                      .++|..|++  |+..+..+.+||||++++. + .+.++.||+++++|+||+|||+|.|.+...        ....|.|+|
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V   84 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV   84 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence            345555555  7777777889999999973 2 345789999999999999999999998643        245799999


Q ss_pred             EECCCC-CCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          329 YDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       329 ~d~~~~-~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                      ||++.+ ++|++||++.++|+.+..+.....|++|..     ......|.|++.+..-
T Consensus        85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-----~~k~~Gg~l~v~ir~r  137 (155)
T cd08690          85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-----GRKATGGKLEVKVRLR  137 (155)
T ss_pred             EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-----CCCCcCCEEEEEEEec
Confidence            999986 579999999999999987766777999853     2446789999999874

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.68  E-value=4.2e-16  Score=134.76  Aligned_cols=110  Identities=26%  Similarity=0.498  Sum_probs=94.0

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC---c
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK---D  522 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~---d  522 (569)
                      |+|+|++|++|+..+..+.+||||++++++ ...++|++++++.||.|||.|+|.+..  ...|.|+|||++..++   +
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~   78 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG-GQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQG   78 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECC-ccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCc
Confidence            789999999999999889999999999964 467899999999999999999999974  6789999999988753   5


Q ss_pred             eeEEEEEecceeeecce-EeEEEEcCCC-------CCeEEEEEE
Q 008334          523 YMGRCILTLTRVILEGE-YTDCFELDGT-------KSGKLKLHL  558 (569)
Q Consensus       523 ~lG~~~i~l~~l~~~~~-~~~w~~L~~~-------~~G~i~l~~  558 (569)
                      +||++.+++.++..... ...||+|...       ..|+|.+++
T Consensus        79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence            99999999999876553 4789999432       267887765

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.68  E-value=3.2e-16  Score=137.03  Aligned_cols=109  Identities=22%  Similarity=0.304  Sum_probs=90.8

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCC--eEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  328 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v  328 (569)
                      +.+..+.|.|+|++|+||+..+..|.+||||++++.+.+.+  ++||++++++.||+|||+|.|.+...  ....|.|+|
T Consensus        10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V   89 (136)
T cd08406          10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV   89 (136)
T ss_pred             EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence            44567899999999999999998899999999999865443  56899999999999999999998643  566899999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      ||++..+++++||++.+....  .+...++|..+.
T Consensus        90 ~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml  122 (136)
T cd08406          90 AESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQML  122 (136)
T ss_pred             EeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHH
Confidence            999999999999999987653  445556676654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.68  E-value=2.7e-16  Score=136.34  Aligned_cols=104  Identities=39%  Similarity=0.644  Sum_probs=92.5

Q ss_pred             EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecC-CCCCCeeccEEEEEEecC---CCcEEEEEEEECCC
Q 008334          258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG  333 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~---~~~~L~i~v~d~~~  333 (569)
                      |.|.|+|++|++|+..+..+.+||||+++++   .+.++|+++. ++.||+|||+|.|.+...   ..+.|.|+|||++.
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~   77 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR---TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN   77 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEEC---CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence            7899999999999998888999999999986   5667888876 489999999999999866   35689999999999


Q ss_pred             CCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          334 IQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      .++|++||++.+++.++..+...+.|+.|.+
T Consensus        78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p  108 (124)
T cd04049          78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP  108 (124)
T ss_pred             CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence            8889999999999999988777889999854

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.68  E-value=3e-16  Score=134.99  Aligned_cols=94  Identities=26%  Similarity=0.420  Sum_probs=82.7

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEec-CCCcEEEEEEEECCC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-ESTQHLVVRIYDDEG  333 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-~~~~~L~i~v~d~~~  333 (569)
                      +..|.|+|+|++|++|+. +..+.+||||+++++   +++++|++++++.||+|||+|.|.... ...+.|.|+|||++.
T Consensus        25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~  100 (127)
T cd04032          25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN  100 (127)
T ss_pred             CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence            678999999999999984 667889999999997   558999999999999999999997533 356799999999999


Q ss_pred             CCCCcceEEEEEEccccCC
Q 008334          334 IQSSELIGCAQVRLCELEP  352 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~~  352 (569)
                      .++|++||++.+++.....
T Consensus       101 ~s~dd~IG~~~i~l~~~~~  119 (127)
T cd04032         101 GWDDDLLGTCSVVPEAGVH  119 (127)
T ss_pred             CCCCCeeEEEEEEecCCce
Confidence            9999999999999986553

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.67  E-value=6.4e-16  Score=135.39  Aligned_cols=110  Identities=34%  Similarity=0.565  Sum_probs=95.2

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccC-CCCEEEEEEEECCCC
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTF  519 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~~~~l~i~V~d~~~~  519 (569)
                      +.|+|+|++|++|+..+..+..||||++.+.+   ...+++|++++++.||.|||+|.|.+... ....|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            77999999999999988888999999999963   23578999999999999999999998754 356899999999887


Q ss_pred             CC-ceeEEEEEecceeeecceEeEEEEcCCCCCeEE
Q 008334          520 GK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKL  554 (569)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i  554 (569)
                      ++ ++||++.++++++... ....||+|.+.+.|+.
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~  127 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY  127 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence            65 6999999999999754 5689999998888864

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.67  E-value=2.4e-16  Score=133.66  Aligned_cols=102  Identities=32%  Similarity=0.596  Sum_probs=87.0

Q ss_pred             eEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccC---CCCEEEEEEEECCC
Q 008334          444 GVLSVTVILAENLPASDLM-GKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDT  518 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~-g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~---~~~~l~i~V~d~~~  518 (569)
                      |.|+|+|++|++|+..+.. +.+||||++++.. +...++|++++++.||+|||.|.|.+...   ....|.++|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999999887 8999999999853 23568999999999999999999988643   35689999999998


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEEcCC
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFELDG  548 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~  548 (569)
                      .++ ++||++.+++.++...   ..|++++.
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~---~~~~~~~~  108 (111)
T cd04041          81 FTADDRLGRVEIDLKELIED---RNWMGRRE  108 (111)
T ss_pred             CCCCCcceEEEEEHHHHhcC---CCCCcccc
Confidence            865 7999999999999733   56777653

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.67  E-value=3.8e-16  Score=137.23  Aligned_cols=105  Identities=22%  Similarity=0.385  Sum_probs=92.2

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEec-CCCCeEEeeecCCCCCCeeccEEEEEEecC---------------CCcE
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQH  323 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---------------~~~~  323 (569)
                      |+|+|++|++|... ..|.+||||+++++. ...+.++|+++.++.||.|||+|.|.+...               ....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999988 678999999999973 225678999999999999999999998765               4568


Q ss_pred             EEEEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEcccc
Q 008334          324 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  365 (569)
Q Consensus       324 L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~  365 (569)
                      |.|+|||++..+++++||++.+++.++........|++|.+.
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~  121 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence            999999999988899999999999999877778999999764

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.67  E-value=8.1e-16  Score=133.75  Aligned_cols=109  Identities=34%  Similarity=0.700  Sum_probs=92.4

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCC-----
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF-----  519 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~-----  519 (569)
                      .|+|+|++|++|+..+..|.+||||++++++  ..++|++++++.||.|||.|.|.+..+ ...|.|+|||++..     
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~   78 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK--TKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRL   78 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECC--EeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCccccc
Confidence            6899999999999999889999999999964  678999999999999999999998754 56899999999852     


Q ss_pred             -------CCceeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEE
Q 008334          520 -------GKDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHL  558 (569)
Q Consensus       520 -------~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~  558 (569)
                             .+++||++.+++.++.  +..+.||.|...     .+|+|.+++
T Consensus        79 ~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          79 KQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             ceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence                   3479999999999874  445799999753     378888764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.67  E-value=3.9e-16  Score=132.14  Aligned_cols=101  Identities=33%  Similarity=0.576  Sum_probs=88.1

Q ss_pred             EEEEEEEeEcCCCCC-CCCCCCcEEEEEEeCCCeeEeecccCCCCCCee-ceEEEEEeccC--CCCEEEEEEEECCCCCC
Q 008334          446 LSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIW-NQTFDFVVEDG--LHDMLIAEVWDHDTFGK  521 (569)
Q Consensus       446 L~v~v~~a~~L~~~~-~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w-~e~f~f~v~~~--~~~~l~i~V~d~~~~~~  521 (569)
                      |.|+|++|++|+..+ ..|.+||||++++++  .+++|++++++.||.| ||.|.|.+...  ....|.|+|||++..++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~--~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~   78 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS--TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSA   78 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECC--eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCC
Confidence            579999999999887 468899999999975  7889999999999999 99999999753  34689999999998876


Q ss_pred             -ceeEEEEEecceeeec---ceEeEEEEcCC
Q 008334          522 -DYMGRCILTLTRVILE---GEYTDCFELDG  548 (569)
Q Consensus       522 -d~lG~~~i~l~~l~~~---~~~~~w~~L~~  548 (569)
                       ++||++.+++.++...   .....||+|.+
T Consensus        79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             CCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence             6999999999999873   35689999864

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.67  E-value=1.2e-16  Score=139.43  Aligned_cols=110  Identities=21%  Similarity=0.372  Sum_probs=90.5

Q ss_pred             cccCccEEEEEEEEEeeccccCCC--CCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEE
Q 008334          252 LELKPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLV  325 (569)
Q Consensus       252 ~~~~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~  325 (569)
                      .+.+..|.|.|+|++|+||...+.  .+.+||||++++.+.+.  .++||++++++.||+|||+|.|.+...  ....|.
T Consensus         9 ~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~   88 (138)
T cd08407           9 SYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVE   88 (138)
T ss_pred             EEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEE
Confidence            345677999999999999999883  35589999999986443  367899999999999999999998643  456799


Q ss_pred             EEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          326 VRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       326 i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      |+|||++..+++++||++.+++..  .+...++|..+.
T Consensus        89 ~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml  124 (138)
T cd08407          89 LEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML  124 (138)
T ss_pred             EEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence            999999999999999999999874  444556676654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.67  E-value=4.1e-16  Score=133.87  Aligned_cols=103  Identities=25%  Similarity=0.425  Sum_probs=91.0

Q ss_pred             EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCC
Q 008334          258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  337 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d  337 (569)
                      |.|+|+|++|++|+..+..+.+||||+++++  +...++|++++++.||+|||+|.|.+... .+.|.|+|||++..++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d   77 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD   77 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence            7899999999999999988999999999996  23568899999999999999999988754 46899999999999899


Q ss_pred             cceEEEEEEccccCCCceeEEEEEccc
Q 008334          338 ELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       338 ~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      ++||++.+++.++..+ ..+.|+.+.+
T Consensus        78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~  103 (120)
T cd04045          78 RSLGSVEINVSDLIKK-NEDGKYVEYD  103 (120)
T ss_pred             CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence            9999999999999876 5578888753

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.67  E-value=5.1e-16  Score=137.07  Aligned_cols=93  Identities=29%  Similarity=0.587  Sum_probs=85.2

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCC
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  336 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~  336 (569)
                      .|.|+|+|++|++|+..+. +.+||||+++++   .+.++|++++++.||+|||+|.|.+.++ ...+.|+|||++.+++
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g---~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~   75 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG---NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK   75 (145)
T ss_pred             CeEEEEEEEeeECCCCCCC-CCcCcEEEEEEC---CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence            4899999999999998887 889999999997   6789999999999999999999999876 6689999999999999


Q ss_pred             CcceEEEEEEccccCCCc
Q 008334          337 SELIGCAQVRLCELEPGK  354 (569)
Q Consensus       337 d~~iG~~~i~l~~l~~~~  354 (569)
                      |++||.+.+++.++....
T Consensus        76 dd~iG~a~i~l~~l~~~~   93 (145)
T cd04038          76 DDSMGEAEIDLEPLVEAA   93 (145)
T ss_pred             CCEEEEEEEEHHHhhhhh
Confidence            999999999999986543

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.67  E-value=2.2e-15  Score=131.52  Aligned_cols=118  Identities=19%  Similarity=0.376  Sum_probs=95.8

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCC----------CCeEEeeecCCCCCCee-ccEEEEEEecCCCcEEEEE
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----------EKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR  327 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----------~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~L~i~  327 (569)
                      +..|++++|+||+ ++..|++||||++++.+.+          .+.++|+++++++||+| ||+|.|.+.  ..+.|.++
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence            3578999999998 7778999999999997533          34799999999999999 999999985  35689999


Q ss_pred             EEECCCCCC---CcceEEEEEEccccCCCc---eeEEEEEccccccccCCCcceeEEEEEE
Q 008334          328 IYDDEGIQS---SELIGCAQVRLCELEPGK---VKDVWLKLVKDLDVQRDTKYRGQVHLEL  382 (569)
Q Consensus       328 v~d~~~~~~---d~~iG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~~~~~~~G~l~l~l  382 (569)
                      |||++..++   +++||++.+++.++..+.   ....|++|.++.   ..+..+|+|.+.+
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~---~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT---PTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC---CCCcEEEEEEEEe
Confidence            999875433   799999999999996542   366789987653   2456789888765

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.67  E-value=4.1e-16  Score=138.41  Aligned_cols=102  Identities=38%  Similarity=0.581  Sum_probs=89.4

Q ss_pred             ccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---------------------------eeEeecccCCCCCCee
Q 008334          441 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---------------------------TRNKTRVVNDCLNPIW  493 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---------------------------~~~~T~~~~~t~nP~w  493 (569)
                      +..+.|.|+|++|++|+..+..|.+||||++++....                           ..++|+++++|.||.|
T Consensus        25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W  104 (153)
T cd08676          25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW  104 (153)
T ss_pred             CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence            5679999999999999999999999999999985321                           2478999999999999


Q ss_pred             ceEEEEEeccCCCCEEEEEEEECCCCCCceeEEEEEecceeeecceEeEEEEc
Q 008334          494 NQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFEL  546 (569)
Q Consensus       494 ~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L  546 (569)
                      ||+|.|.+.+.....|.|+|||++   +++||++.++++++.. ...+.||+|
T Consensus       105 nE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         105 NETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             ccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            999999998766778999999998   6899999999999984 446999986

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.66  E-value=5.2e-16  Score=133.39  Aligned_cols=104  Identities=15%  Similarity=0.256  Sum_probs=81.5

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCC-CCeeceEEEEEeccC-CCCEEEEEEEEC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCL-NPIWNQTFDFVVEDG-LHDMLIAEVWDH  516 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~-nP~w~e~f~f~v~~~-~~~~l~i~V~d~  516 (569)
                      ..+.|+|+|++|+||+..+..+.+||||++++-.   ...++||+++++|. ||+|||+|.|.+... .+..+.|+|||+
T Consensus        12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~   91 (135)
T cd08692          12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR   91 (135)
T ss_pred             cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence            4588999999999999876667789999999853   22478999999995 699999999999753 234789999999


Q ss_pred             CCCCC-ceeEEEEEecceeeecceEeEEEEc
Q 008334          517 DTFGK-DYMGRCILTLTRVILEGEYTDCFEL  546 (569)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L  546 (569)
                      +..++ ++||++.++.++.. +.+.++|..+
T Consensus        92 ~~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m  121 (135)
T cd08692          92 SSVRRKHFLGQVWISSDSSS-SEAVEQWKDT  121 (135)
T ss_pred             CCCcCCceEEEEEECCccCC-chhhhhHHHH
Confidence            88765 79999999997632 2223555443

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>PLN03008 Phospholipase D delta

Probab=99.66  E-value=8.9e-16  Score=164.73  Aligned_cols=129  Identities=22%  Similarity=0.521  Sum_probs=109.8

Q ss_pred             cEEEEEEEEEeeccccCCC------------------------------------------CCCCCcEEEEEEecCCCCe
Q 008334          257 VGTLEVKLVQAKGLTNKDL------------------------------------------IGKSDPYAVLFVRPLPEKT  294 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~~  294 (569)
                      .|.|.++|.+|++|+++|.                                          .+++||||+|.++  +.++
T Consensus        13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg--~~rv   90 (868)
T PLN03008         13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP--QATL   90 (868)
T ss_pred             ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC--Ccce
Confidence            5899999999999885321                                          2467999999996  2456


Q ss_pred             EEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcc
Q 008334          295 KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKY  374 (569)
Q Consensus       295 ~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~  374 (569)
                      .||++++++.||+|||+|.|.+.+.. ..|.|+|||+|.++ +++||++.+|+.++..+...+.|++|.+...  ++.+.
T Consensus        91 ~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~--kp~k~  166 (868)
T PLN03008         91 ARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG--KPPKA  166 (868)
T ss_pred             eeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC--CCCCC
Confidence            79999999999999999999998764 48999999999996 5899999999999999999999999987653  45567


Q ss_pred             eeEEEEEEEEEecCCCC
Q 008334          375 RGQVHLELLYCPFGMEN  391 (569)
Q Consensus       375 ~G~l~l~l~~~p~~~~~  391 (569)
                      .|.|+++++|.|+....
T Consensus       167 ~~kl~v~lqf~pv~~~~  183 (868)
T PLN03008        167 ETAIFIDMKFTPFDQIH  183 (868)
T ss_pred             CcEEEEEEEEEEccccc
Confidence            89999999999987643

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.66  E-value=8.2e-16  Score=130.48  Aligned_cols=98  Identities=22%  Similarity=0.396  Sum_probs=85.2

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCC----CcEEEEEEEECCCC
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEGI  334 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~----~~~L~i~v~d~~~~  334 (569)
                      .|+|+|++|++|.    .|.+||||+++++   +++++|++++++.||.|||+|.|.+..+.    ...|.|+|||++..
T Consensus         5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~   77 (111)
T cd04011           5 QVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL   77 (111)
T ss_pred             EEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence            5889999999998    4789999999998   56789999999999999999999986432    45899999999998


Q ss_pred             CCCcceEEEEEEccccCCC---ceeEEEEEcc
Q 008334          335 QSSELIGCAQVRLCELEPG---KVKDVWLKLV  363 (569)
Q Consensus       335 ~~d~~iG~~~i~l~~l~~~---~~~~~~~~L~  363 (569)
                      ++|++||++.++++++..+   .....|++|.
T Consensus        78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~  109 (111)
T cd04011          78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT  109 (111)
T ss_pred             ccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence            8899999999999999665   3457899885

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.66  E-value=6.3e-16  Score=137.08  Aligned_cols=102  Identities=21%  Similarity=0.294  Sum_probs=85.6

Q ss_pred             EEEEEEEEeeccccCCCCC--------------CCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC-CCcE
Q 008334          259 TLEVKLVQAKGLTNKDLIG--------------KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQH  323 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~  323 (569)
                      .|.|+|++|++|+.+|..+              .+||||++.++   +++.+|++++++.||+|||+|.|.+..+ ..+.
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~   77 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCER   77 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence            3789999999999987543              68999999997   5667999999999999999999997644 3568


Q ss_pred             EEEEEEECCCCCCCcceEEEEEEccccCCCce-------eEEEEEcc
Q 008334          324 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKV-------KDVWLKLV  363 (569)
Q Consensus       324 L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~-------~~~~~~L~  363 (569)
                      |.|+|||++..++|++||.+.+++.++.....       ...|+.+.
T Consensus        78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly  124 (151)
T cd04018          78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY  124 (151)
T ss_pred             EEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence            99999999999899999999999999866442       24666664

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.66  E-value=8.3e-16  Score=129.09  Aligned_cols=93  Identities=24%  Similarity=0.378  Sum_probs=79.9

Q ss_pred             eEEEEEEEEeEcCCCCCCC----CCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccC-CCCEEEEEEEECCC
Q 008334          444 GVLSVTVILAENLPASDLM----GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT  518 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~----g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~~~~l~i~V~d~~~  518 (569)
                      |.|.|+|++|++|+..+..    +.+||||++++++  .++||++++++.||+|||.|.|.+.+. ....|.|+|||++.
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~--~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~   78 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR--RVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK   78 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC--EeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC
Confidence            6899999999999987632    3589999999964  678999999999999999999998754 33579999999998


Q ss_pred             CCC-ceeEEEEEecceeeecc
Q 008334          519 FGK-DYMGRCILTLTRVILEG  538 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~  538 (569)
                      .++ ++||++.++|+++..+.
T Consensus        79 ~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          79 FSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCCCcceEEEEEEHHHHHhhC
Confidence            866 79999999999987654

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.65  E-value=8.6e-16  Score=136.19  Aligned_cols=107  Identities=25%  Similarity=0.396  Sum_probs=90.1

Q ss_pred             EEEEEEEeEcCCCCCCC--------------CCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccC-CCCEEE
Q 008334          446 LSVTVILAENLPASDLM--------------GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLI  510 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~--------------g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~~~~l~  510 (569)
                      |.|+|++|++|+.++..              +.+||||++.+++  .+.+|++++++.||+|||+|.|.+..+ ..+.|.
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g--~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~   79 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG--QKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK   79 (151)
T ss_pred             eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC--EeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence            78999999999998744              3689999999976  567999999999999999999997543 356899


Q ss_pred             EEEEECCCCCC-ceeEEEEEecceeeecce-------EeEEEEcCCCCCeEE
Q 008334          511 AEVWDHDTFGK-DYMGRCILTLTRVILEGE-------YTDCFELDGTKSGKL  554 (569)
Q Consensus       511 i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~-------~~~w~~L~~~~~G~i  554 (569)
                      |+|||++..++ ++||++.+++.++...+.       ...|+.|.+.+.+..
T Consensus        80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~  131 (151)
T cd04018          80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYS  131 (151)
T ss_pred             EEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccccc
Confidence            99999998854 799999999999877653       269999988766544

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.65  E-value=3e-16  Score=137.90  Aligned_cols=110  Identities=25%  Similarity=0.427  Sum_probs=92.9

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  328 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v  328 (569)
                      +....|.|.|+|++|++|++.+..|.+||||++++.+..  ...++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus         8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V   87 (133)
T cd08384           8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV   87 (133)
T ss_pred             EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence            335679999999999999999988999999999997532  3468999999999999999999998643  356899999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      ||++..+++++||++.+++..  .+...+.|+.+.+
T Consensus        88 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~  121 (133)
T cd08384          88 WDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK  121 (133)
T ss_pred             EeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence            999998889999999999985  3445678887754

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.65  E-value=6.4e-16  Score=136.24  Aligned_cols=105  Identities=29%  Similarity=0.381  Sum_probs=87.4

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|++|+..+..|.+||||++++....   .+.+|++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d   93 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD   93 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence            47799999999999999988999999999985422   367899999999999999999998632  3457899999999


Q ss_pred             CCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334          518 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      ..++ ++||++.+++..  ......+|+.|...
T Consensus        94 ~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~  124 (136)
T cd08404          94 RVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP  124 (136)
T ss_pred             CCCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence            8865 799999999998  34455788887543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.65  E-value=3.7e-15  Score=132.03  Aligned_cols=116  Identities=21%  Similarity=0.354  Sum_probs=93.8

Q ss_pred             EEEEEEeEc--CCCCCCCCCCCcEEEEEEe---CCCeeEeecccCCCCCCeeceEEEEEeccCC--------CCEEEEEE
Q 008334          447 SVTVILAEN--LPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVEDGL--------HDMLIAEV  513 (569)
Q Consensus       447 ~v~v~~a~~--L~~~~~~g~~dpyv~v~l~---~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~--------~~~l~i~V  513 (569)
                      .++|..|++  |+..+..+.+||||++++.   ....+.||+++++|+||+|||.|.|.+....        ...|.++|
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V   84 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV   84 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence            445555555  7777778889999999972   2346899999999999999999999996431        35799999


Q ss_pred             EECCCC--CCceeEEEEEecceeeecceEeEEEEcC-CC--CCeEEEEEEEEee
Q 008334          514 WDHDTF--GKDYMGRCILTLTRVILEGEYTDCFELD-GT--KSGKLKLHLKWMP  562 (569)
Q Consensus       514 ~d~~~~--~~d~lG~~~i~l~~l~~~~~~~~w~~L~-~~--~~G~i~l~~~~~p  562 (569)
                      ||++.+  ++++||++.++|+.+..+.....|++|. +.  -+|+|++++..+.
T Consensus        85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~  138 (155)
T cd08690          85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE  138 (155)
T ss_pred             EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence            999986  3579999999999998777778899975 43  3799999998765

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.65  E-value=2.3e-15  Score=130.52  Aligned_cols=106  Identities=34%  Similarity=0.580  Sum_probs=92.7

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCC-CCCCeeceEEEEEeccC---CCCEEEEEEEECCCC
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDTF  519 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~-t~nP~w~e~f~f~v~~~---~~~~l~i~V~d~~~~  519 (569)
                      |.|.|+|++|++|+..+..+.+||||++++++  ..++|++.++ +.||.|||.|.|.+..+   ....|.|+|||++..
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~   78 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT--QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF   78 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECC--EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC
Confidence            57999999999999988888999999999965  5678888774 89999999999999875   356899999999887


Q ss_pred             CC-ceeEEEEEecceeeecceEeEEEEcCCCCC
Q 008334          520 GK-DYMGRCILTLTRVILEGEYTDCFELDGTKS  551 (569)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~  551 (569)
                      +. ++||++.+++.++..++..+.|+.|.....
T Consensus        79 ~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~  111 (124)
T cd04049          79 SDDDFIGEATIHLKGLFEEGVEPGTAELVPAKY  111 (124)
T ss_pred             CCCCeEEEEEEEhHHhhhCCCCcCceEeeccce
Confidence            65 799999999999998888899999988653

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.64  E-value=5.1e-16  Score=136.84  Aligned_cols=107  Identities=23%  Similarity=0.379  Sum_probs=90.5

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEE
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  330 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d  330 (569)
                      ...+.|.|+|++|++|+..|..|.+||||++++.+.+.  .+++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d   91 (136)
T cd08404          12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence            45789999999999999999889999999999974332  357899999999999999999998642  34578999999


Q ss_pred             CCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          331 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       331 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      ++..+++++||++.+++..  .+.....|+.+.
T Consensus        92 ~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~  122 (136)
T cd08404          92 SDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC  122 (136)
T ss_pred             CCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence            9999999999999999988  345567788774

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.64  E-value=2.3e-15  Score=132.25  Aligned_cols=110  Identities=19%  Similarity=0.300  Sum_probs=90.7

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEec--CCCcEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVR  327 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~  327 (569)
                      +....|.|.|+|++|+||+..+..|.+||||++++.+..+   .++||++++++.||+|||+|.|.+..  .....|.|.
T Consensus        10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~   89 (138)
T cd08408          10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS   89 (138)
T ss_pred             EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence            4467899999999999999999889999999999986433   25789999999999999999999874  355689999


Q ss_pred             EEECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          328 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       328 v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      |||++..+++++||++.+++..... ...++|..+.
T Consensus        90 V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l  124 (138)
T cd08408          90 VYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMK  124 (138)
T ss_pred             EEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHH
Confidence            9999999999999999998864322 2235676654

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.63  E-value=2e-15  Score=132.37  Aligned_cols=98  Identities=27%  Similarity=0.380  Sum_probs=86.0

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC----CCeEEeeecCCCCCCeeccEEEEEEecC----CCcEEEE
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVV  326 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~L~i  326 (569)
                      ...+.|+|+|++|++|+..+..|.+||||++++.+..    ...++|++++++.||+|||+|.|.+...    ....|.|
T Consensus        13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~   92 (133)
T cd04009          13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF   92 (133)
T ss_pred             CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence            4568899999999999998888999999999997432    3578999999999999999999998653    3458999


Q ss_pred             EEEECCCCCCCcceEEEEEEccccCC
Q 008334          327 RIYDDEGIQSSELIGCAQVRLCELEP  352 (569)
Q Consensus       327 ~v~d~~~~~~d~~iG~~~i~l~~l~~  352 (569)
                      +|||++..++|++||++.++|+++..
T Consensus        93 ~V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          93 TVKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EEEecCCCCCCcEeEEEEEeHHHCCc
Confidence            99999999889999999999999864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.63  E-value=7.4e-16  Score=135.87  Aligned_cols=104  Identities=28%  Similarity=0.400  Sum_probs=85.0

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|++|+..+..|.+||||++++...   ..+++|++++++.||.|||.|.|.+..  .....|.|+|||++
T Consensus        14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~   93 (136)
T cd08405          14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD   93 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence            4789999999999999888899999999998421   236789999999999999999999863  23568999999999


Q ss_pred             CCCC-ceeEEEEEecceeeecceEeEEEEcCC
Q 008334          518 TFGK-DYMGRCILTLTRVILEGEYTDCFELDG  548 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~  548 (569)
                      ..++ ++||++.+++.+.  +....+|+.+-.
T Consensus        94 ~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~  123 (136)
T cd08405          94 RLSRNDLIGKIYLGWKSG--GLELKHWKDMLS  123 (136)
T ss_pred             CCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence            8875 7999999999875  333456665543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.63  E-value=8.5e-16  Score=135.22  Aligned_cols=104  Identities=23%  Similarity=0.270  Sum_probs=83.6

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|+||+..+ .+.+||||++++....   .+++|++++++.||+|||.|.|.+..  .....|.|+|||.+
T Consensus        14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~   92 (137)
T cd08409          14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG   92 (137)
T ss_pred             CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence            477999999999999888 7889999999986432   36689999999999999999999963  24468999999999


Q ss_pred             CCCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334          518 TFGK-DYMGRCILTLTRVILEGEYTDCFELD  547 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (569)
                      ..++ ++||++.|+......+.+.++|..+-
T Consensus        93 ~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~  123 (137)
T cd08409          93 GVRKSKLLGRVVLGPFMYARGKELEHWNDML  123 (137)
T ss_pred             CCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence            8765 69999999976544444445565543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.63  E-value=1.7e-15  Score=128.36  Aligned_cols=101  Identities=25%  Similarity=0.482  Sum_probs=86.6

Q ss_pred             CCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCC-C
Q 008334          275 LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-G  353 (569)
Q Consensus       275 ~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~-~  353 (569)
                      ..|.+||||+++++  +...++|++++++.||+|||+|.|.+.+...+.|.|+|||++.. +|++||++.++|.++.. +
T Consensus         9 ~~G~~dPYv~v~v~--~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~   85 (111)
T cd04052           9 KTGLLSPYAELYLN--GKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT   85 (111)
T ss_pred             cCCCCCceEEEEEC--CEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence            46889999999997  23467999999999999999999999877677899999999998 89999999999999854 3


Q ss_pred             ceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334          354 KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       354 ~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      ...+.|++|..        ...|+|++++.|.|
T Consensus        86 ~~~~~w~~L~~--------~~~G~i~~~~~~~p  110 (111)
T cd04052          86 SVGQQWFPLSG--------NGQGRIRISALWKP  110 (111)
T ss_pred             hccceeEECCC--------CCCCEEEEEEEEec
Confidence            44679999852        45799999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.63  E-value=3.9e-15  Score=130.59  Aligned_cols=95  Identities=28%  Similarity=0.432  Sum_probs=82.5

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC-----CeeEeecccCCCCCCeeceEEEEEeccC----CCCEEEEEE
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-----ETRNKTRVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEV  513 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~-----~~~~~T~~~~~t~nP~w~e~f~f~v~~~----~~~~l~i~V  513 (569)
                      .+.|+|+|++|++|+..+..|.+||||++++.+.     ..+++|+++++|.||+|||+|.|.+...    ....|.|+|
T Consensus        15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V   94 (133)
T cd04009          15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV   94 (133)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence            3679999999999999888899999999999642     3478999999999999999999998742    356899999


Q ss_pred             EECCCCCC-ceeEEEEEecceeeec
Q 008334          514 WDHDTFGK-DYMGRCILTLTRVILE  537 (569)
Q Consensus       514 ~d~~~~~~-d~lG~~~i~l~~l~~~  537 (569)
                      ||++..++ ++||++.++|+++..-
T Consensus        95 ~d~d~~~~d~~iG~~~i~l~~l~~~  119 (133)
T cd04009          95 KDYDLLGSNDFEGEAFLPLNDIPGV  119 (133)
T ss_pred             EecCCCCCCcEeEEEEEeHHHCCcc
Confidence            99998875 7999999999998643

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=1.1e-16  Score=151.87  Aligned_cols=229  Identities=28%  Similarity=0.379  Sum_probs=169.6

Q ss_pred             ccccccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEE--EEecC-CCcE
Q 008334          249 YSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEF--IVEDE-STQH  323 (569)
Q Consensus       249 ~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f--~v~~~-~~~~  323 (569)
                      +..++......+..++.+|++|+.++..+..|||++..+.+.-.  .+.+|++..+++||.|+|+-..  ...+. ....
T Consensus        84 ~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~  163 (362)
T KOG1013|consen   84 FELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKV  163 (362)
T ss_pred             hhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhh
Confidence            33445556678899999999999999999999999999985322  3578889999999999986433  33322 2346


Q ss_pred             EEEEEEECCCCCCCcceEEEEEEccccCCCceeE--EEEEccccc-cccC-CCcceeEEEEEEEEEecCCCCCcCCCCCC
Q 008334          324 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD--VWLKLVKDL-DVQR-DTKYRGQVHLELLYCPFGMENVFTNPFAP  399 (569)
Q Consensus       324 L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~--~~~~L~~~~-~~~~-~~~~~G~l~l~l~~~p~~~~~~~~~~~~~  399 (569)
                      +++.|.|.+.+...+++|+..+++..+.+.+...  .|+.-.-+. .... ....+|.+.+++.|-              
T Consensus       164 ~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~--------------  229 (362)
T KOG1013|consen  164 LRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYS--------------  229 (362)
T ss_pred             hheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccC--------------
Confidence            7889999999988999999999999887654322  222211110 0011 124556666665552              


Q ss_pred             CCChhhHHHHhhcCcccccCCCCCccccccchhhhccccccccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---
Q 008334          400 NFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---  476 (569)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---  476 (569)
                                                               ....-+.+++.+|.+|..+|.+|.+||||..++...   
T Consensus       230 -----------------------------------------s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~  268 (362)
T KOG1013|consen  230 -----------------------------------------STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGK  268 (362)
T ss_pred             -----------------------------------------cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcch
Confidence                                                     234668899999999999999999999999998532   


Q ss_pred             CeeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEECCCC-CCceeEEEEEecc
Q 008334          477 ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHDTF-GKDYMGRCILTLT  532 (569)
Q Consensus       477 ~~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~~~~-~~d~lG~~~i~l~  532 (569)
                      .-+++|.+.++|.+|+||+.|.|.+..  .....+.|.|||++.- +.|++|-+...+.
T Consensus       269 ~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~  327 (362)
T KOG1013|consen  269 KFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY  327 (362)
T ss_pred             hhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence            236899999999999999999999874  3556899999999887 3488887665544

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.63  E-value=1.1e-15  Score=131.33  Aligned_cols=112  Identities=10%  Similarity=0.211  Sum_probs=89.0

Q ss_pred             ccccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCC--eEEeeecCCCC-CCeeccEEEEEEecCC-CcEEEE
Q 008334          251 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDL-NPIWNEHFEFIVEDES-TQHLVV  326 (569)
Q Consensus       251 ~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~-nP~wne~f~f~v~~~~-~~~L~i  326 (569)
                      ..+.+..|+|+|+|++|+||++.+..+.+||||++++...+++  ++||+++++|. ||+|||+|.|.+.... .-.|.+
T Consensus         7 L~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v   86 (135)
T cd08692           7 TCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI   86 (135)
T ss_pred             eeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence            3466788999999999999998755566799999999754443  68899999985 6999999999997542 347889


Q ss_pred             EEEECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          327 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       327 ~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      +|||++..+++++||++.+..+.. .+...++|....
T Consensus        87 ~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~  122 (135)
T cd08692          87 KLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTI  122 (135)
T ss_pred             EEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHH
Confidence            999999988999999999998763 223346776543

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.63  E-value=9.7e-16  Score=135.12  Aligned_cols=106  Identities=30%  Similarity=0.471  Sum_probs=86.1

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEEC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  516 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~  516 (569)
                      ..+.|.|+|++|++|+..+..|.+||||++++...   ..+++|++++++.||.|||.|.|.+...  ....|.|+|||+
T Consensus        13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~   92 (136)
T cd08402          13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY   92 (136)
T ss_pred             CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence            34789999999999999998899999999999532   2467899999999999999999998642  235799999999


Q ss_pred             CCCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334          517 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      +..++ ++||++.+++...  +.+..+|+.+-..
T Consensus        93 ~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~  124 (136)
T cd08402          93 DRIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS  124 (136)
T ss_pred             CCCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence            98876 7999999999763  3344666665443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.63  E-value=1.3e-15  Score=131.72  Aligned_cols=93  Identities=28%  Similarity=0.380  Sum_probs=81.3

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCc
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  338 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~  338 (569)
                      +|+|+|++|++|++.+..|.+||||+++++.. ....+|++++++.||+|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd   79 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD   79 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence            37899999999999998899999999999732 23467888889999999999999987666779999999999998999


Q ss_pred             ceEEEEEEccccCC
Q 008334          339 LIGCAQVRLCELEP  352 (569)
Q Consensus       339 ~iG~~~i~l~~l~~  352 (569)
                      +||++.+++++...
T Consensus        80 ~iG~~~i~l~~~~~   93 (124)
T cd04037          80 LIGETVIDLEDRFF   93 (124)
T ss_pred             eeEEEEEeeccccc
Confidence            99999999987653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.63  E-value=4e-15  Score=131.19  Aligned_cols=109  Identities=30%  Similarity=0.454  Sum_probs=90.3

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  328 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v  328 (569)
                      +.+..|.|.|+|++|++|+..+..|.+||||++++.+.+.  ..++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus        10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v   89 (136)
T cd08402          10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            4467799999999999999999889999999999974322  467899999999999999999998643  234799999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      ||++.+++|++||++.+++...  +...+.|.++.
T Consensus        90 ~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~  122 (136)
T cd08402          90 LDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDML  122 (136)
T ss_pred             EeCCCCCCCceeEEEEECCccC--ChHHHHHHHHH
Confidence            9999999999999999999763  34445676664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.62  E-value=6e-15  Score=130.26  Aligned_cols=90  Identities=40%  Similarity=0.677  Sum_probs=81.9

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-c
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D  522 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d  522 (569)
                      |.|+|+|++|++|+..+. +.+||||++++++  .+.+|++++++.||+|||.|.|.+.++ ...|.|+|||++.+++ +
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~--~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd   77 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN--QKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDD   77 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC--EEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence            789999999999998887 8899999999975  788999999999999999999999876 6789999999998876 7


Q ss_pred             eeEEEEEecceeeec
Q 008334          523 YMGRCILTLTRVILE  537 (569)
Q Consensus       523 ~lG~~~i~l~~l~~~  537 (569)
                      +||++.+++.++...
T Consensus        78 ~iG~a~i~l~~l~~~   92 (145)
T cd04038          78 SMGEAEIDLEPLVEA   92 (145)
T ss_pred             EEEEEEEEHHHhhhh
Confidence            999999999987654

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.62  E-value=6.3e-16  Score=135.94  Aligned_cols=109  Identities=29%  Similarity=0.480  Sum_probs=90.1

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  328 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v  328 (569)
                      +....|.|+|+|++|++|++.+..|.+||||++++.+.+  ...++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus         9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v   88 (134)
T cd08403           9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV   88 (134)
T ss_pred             EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            345679999999999999999989999999999997433  2467899899999999999999987543  334699999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      ||++..+++++||++.+++.  ..+...+.|+.+.
T Consensus        89 ~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~  121 (134)
T cd08403          89 VDYDRVGHNELIGVCRVGPN--ADGQGREHWNEML  121 (134)
T ss_pred             EECCCCCCCceeEEEEECCC--CCCchHHHHHHHH
Confidence            99999999999999999987  3344456777664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.62  E-value=5.3e-15  Score=127.00  Aligned_cols=108  Identities=23%  Similarity=0.424  Sum_probs=93.4

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-c
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D  522 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d  522 (569)
                      |.|+|+|++|++|+..+..+.+||||++++++ ..+++|++++++.||.|||.|.|.+... .+.|.|+|||++..++ +
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~   78 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG-IVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDR   78 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECC-EEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence            67999999999999998889999999999964 3678999999999999999999998764 4689999999998876 6


Q ss_pred             eeEEEEEecceeeecceEeEEEEcCCCCCeEE
Q 008334          523 YMGRCILTLTRVILEGEYTDCFELDGTKSGKL  554 (569)
Q Consensus       523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i  554 (569)
                      +||++.+++.++..+ ....||.|-+...+++
T Consensus        79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~  109 (120)
T cd04045          79 SLGSVEINVSDLIKK-NEDGKYVEYDDEEERL  109 (120)
T ss_pred             eeeEEEEeHHHhhCC-CCCceEEecCCCccee
Confidence            999999999999876 5588888876655554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.62  E-value=2.7e-15  Score=132.30  Aligned_cols=109  Identities=24%  Similarity=0.418  Sum_probs=90.3

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  328 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v  328 (569)
                      +.+..|.|.|+|++|+||...+..|.+||||++++.+.+  ..+++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus        10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v   89 (136)
T cd08405          10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence            335679999999999999998888999999999986432  2467899999999999999999987532  345899999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      ||++..+++++||++.+++.+.  +...+.|..+.
T Consensus        90 ~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~  122 (136)
T cd08405          90 MDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDML  122 (136)
T ss_pred             EECCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence            9999998999999999999875  44455676654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.62  E-value=6.4e-15  Score=129.44  Aligned_cols=105  Identities=23%  Similarity=0.398  Sum_probs=83.3

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|++|+..+..|.+||||++++..+   ..+++|+++++|.||+|||+|.|.+...  ....|.|+|||++
T Consensus        13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d   92 (135)
T cd08410          13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHN   92 (135)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            4789999999999999998899999999998432   2457899999999999999999998532  3457999999999


Q ss_pred             CCCC-ceeEEEEEecceeeecceEeEEEEcCC
Q 008334          518 TFGK-DYMGRCILTLTRVILEGEYTDCFELDG  548 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~  548 (569)
                      ..++ ++||++.|+....-. ...++|+.|..
T Consensus        93 ~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~  123 (135)
T cd08410          93 VKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN  123 (135)
T ss_pred             CCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence            8765 799999877644321 23466766543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.62  E-value=8.6e-15  Score=126.80  Aligned_cols=117  Identities=24%  Similarity=0.420  Sum_probs=93.4

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCc
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE  338 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~  338 (569)
                      .|.|+|++|+ |...+..+.+||||+++++.  ...++|++++++.||+|||+|.|.+.  ..+.|.|+|||++..+.|+
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~--~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~~~~~~   77 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDG--QPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHTLKADV   77 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECC--cccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCCCCCCc
Confidence            6899999998 55555578899999999972  24789999999999999999999985  3568999999999998999


Q ss_pred             ceEEEEEEccccCCCc---e--eEEEEEccccccccCCCcceeEEEEEE
Q 008334          339 LIGCAQVRLCELEPGK---V--KDVWLKLVKDLDVQRDTKYRGQVHLEL  382 (569)
Q Consensus       339 ~iG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~~~~~~~~G~l~l~l  382 (569)
                      +||++.+++.++....   .  ...|+++.+..  ...++..|++.+++
T Consensus        78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~~~~~  124 (125)
T cd04021          78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSEN--KGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEEEEHHHhHhhcCCCccceEEEEEEEccC--CCcceeeeeEEEEe
Confidence            9999999999986432   2  23578876432  11447789998875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.62  E-value=1.5e-15  Score=133.70  Aligned_cols=108  Identities=31%  Similarity=0.461  Sum_probs=90.8

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEeccCC--CCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~~~--~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|++|+..+..+.+||||++++....   .+++|++++++.||.|||+|.|.+....  ...|.|+|||.+
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~   92 (134)
T cd00276          13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD   92 (134)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence            47899999999999998888899999999996532   3679999999999999999999987542  578999999998


Q ss_pred             CCCC-ceeEEEEEecceeeecceEeEEEEcCCCCCe
Q 008334          518 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSG  552 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G  552 (569)
                      ..+. ++||++.+++++  .+...++|++|...+..
T Consensus        93 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~  126 (134)
T cd00276          93 SVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRK  126 (134)
T ss_pred             CCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCC
Confidence            8655 799999999999  45556899998766433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.62  E-value=6.6e-15  Score=125.90  Aligned_cols=103  Identities=38%  Similarity=0.625  Sum_probs=91.5

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-cee
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM  524 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l  524 (569)
                      |+|+|++|++|+..+..+.+||||++++++ ...++|+++.++.||.|||+|.|.+.......+.|+|||++..+. ++|
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNG-EKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL   79 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECC-CcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence            578999999999988888999999999964 456899999999999999999999986667889999999998765 699


Q ss_pred             EEEEEecceeeecceEeEEEEcCCC
Q 008334          525 GRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       525 G~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      |++.+++.++..+.....|++|.+.
T Consensus        80 G~~~~~l~~l~~~~~~~~~~~L~~~  104 (115)
T cd04040          80 GSAYIDLSDLEPEETTELTLPLDGQ  104 (115)
T ss_pred             EEEEEEHHHcCCCCcEEEEEECcCC
Confidence            9999999999887788999999754

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.62  E-value=3.2e-15  Score=129.84  Aligned_cols=110  Identities=25%  Similarity=0.397  Sum_probs=93.0

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccC-CCCCCeeceEEEEEeccCC----CCEEEEEEEECCCCC
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGL----HDMLIAEVWDHDTFG  520 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~----~~~l~i~V~d~~~~~  520 (569)
                      |+|+|++|++|+..+..+.+||||++++++ ..+++|++.. ++.||.|||.|.|.+....    ...|.++|||++..+
T Consensus         2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           2 LEITIISAEDLKNVNLFGKMKVYAVVWIDP-SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             EEEEEEEcccCCCCCcccCCceEEEEEECC-CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            789999999999988889999999999975 4567888875 5899999999999998653    678999999998865


Q ss_pred             C-ceeEEEEEecceeeecce-----EeEEEEcCC---CCCeEEEE
Q 008334          521 K-DYMGRCILTLTRVILEGE-----YTDCFELDG---TKSGKLKL  556 (569)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~~-----~~~w~~L~~---~~~G~i~l  556 (569)
                      . ++||++.+++.++..+..     ...||+|.+   +..|.|++
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence            4 799999999999987654     368999963   46788764

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.62  E-value=4.7e-15  Score=125.82  Aligned_cols=100  Identities=21%  Similarity=0.258  Sum_probs=86.0

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCC----CCEEEEEEEECCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL----HDMLIAEVWDHDT  518 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~----~~~l~i~V~d~~~  518 (569)
                      ...|+|+|++|++|+    .|.+||||++++++  ++++|++++++.||.|||+|.|.+..+.    ...|.|+|||++.
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~   76 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG--QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS   76 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEECC--EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence            378999999999998    57899999999985  6778999999999999999999986432    4689999999998


Q ss_pred             CCC-ceeEEEEEecceeeecc---eEeEEEEcCC
Q 008334          519 FGK-DYMGRCILTLTRVILEG---EYTDCFELDG  548 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~---~~~~w~~L~~  548 (569)
                      .++ ++||++.++|+++..+.   -...|++|.+
T Consensus        77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             cccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            765 79999999999997663   3589999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.61  E-value=1.1e-14  Score=127.65  Aligned_cols=124  Identities=18%  Similarity=0.335  Sum_probs=99.7

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  334 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~  334 (569)
                      +....|.|.|++|++|+.++     +|||.+.++  +....||+++.++.||.|+|+|.|..... -..+.|.||+.+..
T Consensus         8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld--~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~   79 (146)
T cd04013           8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLD--KTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDK   79 (146)
T ss_pred             EEEEEEEEEEEEccCCCCcC-----CceEEEEEC--CEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCc
Confidence            45678999999999998764     799999998  24457999999999999999999976543 35799999865432


Q ss_pred             ----CCCcceEEEEEEccccCCCceeEEEEEcccccccc-----CCCcceeEEEEEEEEEe
Q 008334          335 ----QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ-----RDTKYRGQVHLELLYCP  386 (569)
Q Consensus       335 ----~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~-----~~~~~~G~l~l~l~~~p  386 (569)
                          .++++||.+.|++.++..+...+.|++|.......     ...+..+.|++.++|.+
T Consensus        80 ~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~  140 (146)
T cd04013          80 KKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS  140 (146)
T ss_pred             cccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence                15799999999999999999999999998643211     01245689999999986

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.61  E-value=1.7e-15  Score=177.24  Aligned_cols=118  Identities=27%  Similarity=0.578  Sum_probs=106.7

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCC-CCEEEEEEEECCCCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL-HDMLIAEVWDHDTFG  520 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~-~~~l~i~V~d~~~~~  520 (569)
                      ..|.|+|+|++|.||.  +..|.+||||++.+++ ..+.||++++++.||+|||.|+|.+.++. ++.|+|+|||+|.++
T Consensus      1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~-~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200       1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN-GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred             CCcceEEEEeeccccc--cccCCCCCeEEEEECC-CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence            4689999999999998  4468999999999985 34669999999999999999999998874 467999999999998


Q ss_pred             CceeEEEEEecceeeecceEeEEEEcCC--CCCeE---EEEEEEEee
Q 008334          521 KDYMGRCILTLTRVILEGEYTDCFELDG--TKSGK---LKLHLKWMP  562 (569)
Q Consensus       521 ~d~lG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~---i~l~~~~~p  562 (569)
                      +|.+|.++|++.++..++.+++||+|.+  ++.|+   |+++++|.+
T Consensus      2055 kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2055 KSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             CCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence            8999999999999999999999999986  67898   999999986

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.61  E-value=2.2e-15  Score=132.37  Aligned_cols=106  Identities=29%  Similarity=0.426  Sum_probs=88.2

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEEC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  516 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~  516 (569)
                      ..+.|.|+|++|++|+..+..|.+||||++++.+.   ..+++|++++++.||.|||+|.|.+...  ....|.|+|||+
T Consensus        11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~   90 (133)
T cd08384          11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK   90 (133)
T ss_pred             CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence            45889999999999999998899999999999642   2467999999999999999999998743  346899999999


Q ss_pred             CCCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334          517 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      +..++ ++||++.+++..  .+....+||.+...
T Consensus        91 d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~  122 (133)
T cd08384          91 DIGKSNDYIGGLQLGINA--KGERLRHWLDCLKN  122 (133)
T ss_pred             CCCCCccEEEEEEEecCC--CCchHHHHHHHHhC
Confidence            88765 799999999986  33445788877443

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.61  E-value=6.6e-15  Score=129.36  Aligned_cols=111  Identities=27%  Similarity=0.465  Sum_probs=88.0

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  328 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v  328 (569)
                      +.+..|.|.|+|++|++|+..|..|.+||||++++.+..  .++++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus         9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V   88 (135)
T cd08410           9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV   88 (135)
T ss_pred             ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence            335679999999999999999988999999999986422  2457899999999999999999998533  334799999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      ||++..+++++||++.+....... ...++|..+..
T Consensus        89 ~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~  123 (135)
T cd08410          89 YGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN  123 (135)
T ss_pred             EeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence            999999999999998866533322 22466776653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.60  E-value=1.2e-14  Score=127.30  Aligned_cols=117  Identities=14%  Similarity=0.249  Sum_probs=96.5

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCC-C-
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT-F-  519 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~-~-  519 (569)
                      ....|.|.|.+|++|+.++     +|||.+.+++ ....||+++.++.||.|+|.|.|.+..+ -..+.|.||+.+. . 
T Consensus         9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~-~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~   81 (146)
T cd04013           9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDK-TLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKK   81 (146)
T ss_pred             EEEEEEEEEEEccCCCCcC-----CceEEEEECC-EEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccc
Confidence            4467999999999998864     7999999986 4567999999999999999999987643 4679999976542 2 


Q ss_pred             ---CCceeEEEEEecceeeecceEeEEEEcCCC-------------CCeEEEEEEEEeecCC
Q 008334          520 ---GKDYMGRCILTLTRVILEGEYTDCFELDGT-------------KSGKLKLHLKWMPQPI  565 (569)
Q Consensus       520 ---~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-------------~~G~i~l~~~~~p~~~  565 (569)
                         ++++||.+.|+++++..+...+.||+|.+.             +.+.|+++++|.+.-.
T Consensus        82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~  143 (146)
T cd04013          82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRV  143 (146)
T ss_pred             cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeee
Confidence               236999999999999987788999999532             2379999999998754

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.60  E-value=6.4e-15  Score=126.86  Aligned_cols=100  Identities=26%  Similarity=0.436  Sum_probs=86.5

Q ss_pred             EEEeeccccCCCCCCCCcEEEEEEecCC----CCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCC----CC
Q 008334          264 LVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG----IQ  335 (569)
Q Consensus       264 v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~----~~  335 (569)
                      .++|++|++.+..|.+||||++++.+..    ...++|++++++.||+|||+|.|.+.....+.|.|+|||++.    .+
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~   85 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS   85 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence            3789999999988999999999998432    125899999999999999999998765556689999999997    78


Q ss_pred             CCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          336 SSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       336 ~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      ++++||++.+++.++..+.....|++|.
T Consensus        86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~  113 (120)
T cd04048          86 DHDFLGEAECTLGEIVSSPGQKLTLPLK  113 (120)
T ss_pred             CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence            8999999999999998877777888873

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>PLN03008 Phospholipase D delta

Probab=99.60  E-value=7.3e-15  Score=157.77  Aligned_cols=124  Identities=23%  Similarity=0.487  Sum_probs=105.9

Q ss_pred             ccceEEEEEEEEeEcCCCCCC------------------------------------------CCCCCcEEEEEEeCCCe
Q 008334          441 IIRGVLSVTVILAENLPASDL------------------------------------------MGKADPYVVLTMKKSET  478 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~~------------------------------------------~g~~dpyv~v~l~~~~~  478 (569)
                      .--|.|.++|.+|++|+.+|.                                          .+++||||+|.+++ .+
T Consensus        11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~-~r   89 (868)
T PLN03008         11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQ-AT   89 (868)
T ss_pred             EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECC-cc
Confidence            456889999999999885221                                          23679999999964 55


Q ss_pred             eEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCceeEEEEEecceeeecceEeEEEEcCCC------CCe
Q 008334          479 RNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT------KSG  552 (569)
Q Consensus       479 ~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G  552 (569)
                      +.||++++++.||+|||+|.|.|.++ ...|.|+|||++.+++++||++.||+.++..+...+.|++|.+.      +.|
T Consensus        90 v~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~  168 (868)
T PLN03008         90 LARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAET  168 (868)
T ss_pred             eeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCc
Confidence            77999999999999999999999985 45899999999999989999999999999988888999999542      468


Q ss_pred             EEEEEEEEeecCCC
Q 008334          553 KLKLHLKWMPQPIY  566 (569)
Q Consensus       553 ~i~l~~~~~p~~~~  566 (569)
                      +|+++++|+|...-
T Consensus       169 kl~v~lqf~pv~~~  182 (868)
T PLN03008        169 AIFIDMKFTPFDQI  182 (868)
T ss_pred             EEEEEEEEEEcccc
Confidence            99999999997543

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.60  E-value=5.7e-15  Score=129.80  Aligned_cols=103  Identities=24%  Similarity=0.421  Sum_probs=89.9

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC--CeeEeecccCCCCCCeeceEEEEEeccC---------------CCCE
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKKS--ETRNKTRVVNDCLNPIWNQTFDFVVEDG---------------LHDM  508 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~--~~~~~T~~~~~t~nP~w~e~f~f~v~~~---------------~~~~  508 (569)
                      |+|.|++|++|+.. ..|.+||||+++++..  ..+++|++++++.||.|||+|.|.+...               ....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57899999999988 7889999999999732  4678999999999999999999998764               4568


Q ss_pred             EEEEEEECCCCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334          509 LIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       509 l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      |.|+|||++..++ ++||++.+++.++...+....||+|...
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~  121 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence            9999999998754 7999999999999877777999999765

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.60  E-value=1.7e-14  Score=124.90  Aligned_cols=101  Identities=29%  Similarity=0.400  Sum_probs=83.2

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEecc---CCCCEEEEEEEEC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDH  516 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~---~~~~~l~i~V~d~  516 (569)
                      .+.|+|+|++|++|+..+..+.+||||++++...   ..+++|++++++.||.|||.|.|....   .....+.|+|||+
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~   93 (123)
T cd04035          14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE   93 (123)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence            4779999999999999888889999999998532   247899999999999999999996322   2356899999999


Q ss_pred             CCCCCceeEEEEEecceeeecceEeEE
Q 008334          517 DTFGKDYMGRCILTLTRVILEGEYTDC  543 (569)
Q Consensus       517 ~~~~~d~lG~~~i~l~~l~~~~~~~~w  543 (569)
                      +..++++||++.++++++..++...-|
T Consensus        94 ~~~~~~~iG~~~i~l~~l~~~~~~~~~  120 (123)
T cd04035          94 DRFGNDFLGETRIPLKKLKPNQTKQFN  120 (123)
T ss_pred             CCcCCeeEEEEEEEcccCCCCcceEee
Confidence            887557999999999999766544433

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.60  E-value=7.9e-15  Score=128.48  Aligned_cols=106  Identities=34%  Similarity=0.570  Sum_probs=92.6

Q ss_pred             EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC-CCcEEEEEEEECCCC
Q 008334          258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDEGI  334 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~v~d~~~~  334 (569)
                      |.|+|+|++|++|+..+..+.+||||.+.+.+.+  ...++|++++++.||.|||+|.|.+... ..+.|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            8899999999999998888899999999997422  3678999999999999999999998654 346899999999988


Q ss_pred             CCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          335 QSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       335 ~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      +++++||++.+++.++... ..+.|++|..
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~  121 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN  121 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence            8899999999999999754 6788999964

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.60  E-value=2.4e-15  Score=132.35  Aligned_cols=109  Identities=24%  Similarity=0.401  Sum_probs=91.0

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEec--CCCcEEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIY  329 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~v~  329 (569)
                      .+..+.|.|+|++|+||...+ .+.+||||++++.+.+.  .+++|++++++.||+|||+|.|.+..  .....|.|+||
T Consensus        11 ~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~   89 (137)
T cd08409          11 NPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM   89 (137)
T ss_pred             CCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence            356789999999999999888 78899999999986433  36789999999999999999999863  34468999999


Q ss_pred             ECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      |++..+++++||++.++......+...++|..+.
T Consensus        90 ~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~  123 (137)
T cd08409          90 QSGGVRKSKLLGRVVLGPFMYARGKELEHWNDML  123 (137)
T ss_pred             eCCCCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence            9999889999999999876555566566777664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.60  E-value=4.1e-15  Score=128.61  Aligned_cols=118  Identities=24%  Similarity=0.407  Sum_probs=91.7

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ce
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY  523 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~  523 (569)
                      .|+|+|++|++|+..+..|.+||||++++++.....+|.+++++.||+|||+|.|.+..+..+.|.|+|||++..++ ++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            37899999999999998899999999999764445678888899999999999999876677899999999998865 79


Q ss_pred             eEEEEEecceeeecceEeEEEEcCC--CCCeEEEEEEEEeec
Q 008334          524 MGRCILTLTRVILEGEYTDCFELDG--TKSGKLKLHLKWMPQ  563 (569)
Q Consensus       524 lG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~i~l~~~~~p~  563 (569)
                      ||++.+++.+....+ ..+++-+..  ...|.++..-.+.|.
T Consensus        81 iG~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (124)
T cd04037          81 IGETVIDLEDRFFSK-HRATCGLPPTYEESGPNQWRDSLKPS  121 (124)
T ss_pred             eEEEEEeecccccch-HHHhccCCCcccccCceecCcccCcc
Confidence            999999999876421 122222221  245666665555543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.60  E-value=1.1e-14  Score=125.99  Aligned_cols=106  Identities=25%  Similarity=0.420  Sum_probs=89.3

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEec---CCCcEEEEEEE
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY  329 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~i~v~  329 (569)
                      ...+.|+|+|++|++|++.+..+.+||||++++.+..  ...++|++++++.||+|||+|.|....   .....+.|+||
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~   91 (123)
T cd04035          12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL   91 (123)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence            4568899999999999998888899999999986432  357899999999999999999986322   23568999999


Q ss_pred             ECCCCCCCcceEEEEEEccccCCCceeEEEEE
Q 008334          330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLK  361 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~  361 (569)
                      |++.. .+++||++.++++++..+...+.|+.
T Consensus        92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~  122 (123)
T cd04035          92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC  122 (123)
T ss_pred             EcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence            99988 89999999999999988777666653

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.60  E-value=4.1e-15  Score=130.75  Aligned_cols=103  Identities=31%  Similarity=0.418  Sum_probs=83.6

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~  517 (569)
                      .+.|+|+|++|++|+..+..|.+||||++++...   ..+++|++++++.||.|||.|.|.+...  ....|.|+|||++
T Consensus        13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~   92 (134)
T cd08403          13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYD   92 (134)
T ss_pred             CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence            4889999999999999998899999999998532   2467899999999999999999998632  3346999999999


Q ss_pred             CCCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334          518 TFGK-DYMGRCILTLTRVILEGEYTDCFELD  547 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (569)
                      ..+. ++||++.+++...  +.....|+.+-
T Consensus        93 ~~~~~~~IG~~~l~~~~~--~~~~~~w~~~~  121 (134)
T cd08403          93 RVGHNELIGVCRVGPNAD--GQGREHWNEML  121 (134)
T ss_pred             CCCCCceeEEEEECCCCC--CchHHHHHHHH
Confidence            8875 7999999998732  23345666653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.59  E-value=1e-15  Score=149.54  Aligned_cols=109  Identities=34%  Similarity=0.593  Sum_probs=93.4

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccC-CCCEEEEEEEECCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT  518 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~~~~l~i~V~d~~~  518 (569)
                      ...|.|+|.+|+||.++|.+|.+||||++.+-.   ...+++|++++.++||+|||+|+|.+... .+..|.|+|||+|.
T Consensus       179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr  258 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR  258 (683)
T ss_pred             CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence            367999999999999999999999999999942   34578999999999999999999999743 45689999999999


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEEcCCCCCe
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSG  552 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G  552 (569)
                      .++ ||+|..++.++++..+. .+.||.|-....|
T Consensus       259 TsRNDFMGslSFgisEl~K~p-~~GWyKlLsqeEG  292 (683)
T KOG0696|consen  259 TSRNDFMGSLSFGISELQKAP-VDGWYKLLSQEEG  292 (683)
T ss_pred             cccccccceecccHHHHhhcc-hhhHHHHhhhhcC
Confidence            876 89999999999987654 4889988655444

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.59  E-value=2.7e-14  Score=124.68  Aligned_cols=111  Identities=24%  Similarity=0.468  Sum_probs=91.2

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC-----------eeEeecccCCCCCCee-ceEEEEEeccCCCCEEEEE
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSE-----------TRNKTRVVNDCLNPIW-NQTFDFVVEDGLHDMLIAE  512 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~-----------~~~~T~~~~~t~nP~w-~e~f~f~v~~~~~~~l~i~  512 (569)
                      .+.|++++|++|+ .+..|.+||||++++....           .+++|+++++++||+| ||+|.|.+.  .++.|.++
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence            3678999999998 6677999999999996322           3689999999999999 999999986  35689999


Q ss_pred             EEECCCCC----CceeEEEEEecceeeecc---eEeEEEEcCCC-----CCeEEEEEE
Q 008334          513 VWDHDTFG----KDYMGRCILTLTRVILEG---EYTDCFELDGT-----KSGKLKLHL  558 (569)
Q Consensus       513 V~d~~~~~----~d~lG~~~i~l~~l~~~~---~~~~w~~L~~~-----~~G~i~l~~  558 (569)
                      |||++..+    +++||++.+++.++....   ....||+|...     -+|+|.+++
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            99976543    479999999999997653   35789999743     368888875

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.59  E-value=2.2e-14  Score=123.03  Aligned_cols=114  Identities=31%  Similarity=0.512  Sum_probs=88.8

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCC--CcEEEEEEEECCCCCCC
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYDDEGIQSS  337 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~v~d~~~~~~d  337 (569)
                      |.|+|++|++|+..   +.+||||+++++  +.+.++|+++++ .||+|||+|.|.+....  ...|.+.+||.+...++
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~   75 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD   75 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence            68999999999876   789999999997  234578999888 99999999999987542  34688888988876556


Q ss_pred             cceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          338 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       338 ~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      ..+|.  +++..+..+...+.|++|.+..   ......|+|++.+.|
T Consensus        76 ~~~g~--v~l~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~  117 (117)
T cd08383          76 IVIGK--VALSKLDLGQGKDEWFPLTPVD---PDSEVQGSVRLRARY  117 (117)
T ss_pred             eEEEE--EEecCcCCCCcceeEEECccCC---CCCCcCceEEEEEEC
Confidence            66665  4555555577789999997532   234678999999876

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.58  E-value=7e-16  Score=150.75  Aligned_cols=109  Identities=33%  Similarity=0.582  Sum_probs=94.7

Q ss_pred             ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC-CCcEEEEEEEECC
Q 008334          256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE  332 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~v~d~~  332 (569)
                      ....|+|+|.+|+||.++|.+|.+||||++.+-|..  ..+++|++++.++||+|||+|.|.+... ....|.++|||+|
T Consensus       178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD  257 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD  257 (683)
T ss_pred             cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence            346788999999999999999999999999997644  3468899999999999999999998754 4568999999999


Q ss_pred             CCCCCcceEEEEEEccccCCCceeEEEEEcccc
Q 008334          333 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  365 (569)
Q Consensus       333 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~  365 (569)
                      +.+++|++|+.++.+++|.... .+.|++|...
T Consensus       258 rTsRNDFMGslSFgisEl~K~p-~~GWyKlLsq  289 (683)
T KOG0696|consen  258 RTSRNDFMGSLSFGISELQKAP-VDGWYKLLSQ  289 (683)
T ss_pred             ccccccccceecccHHHHhhcc-hhhHHHHhhh
Confidence            9999999999999999987543 6789998653

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.58  E-value=2.6e-14  Score=122.58  Aligned_cols=108  Identities=24%  Similarity=0.424  Sum_probs=85.3

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCC--CCEEEEEEEECCCCCC-c
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHDTFGK-D  522 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~--~~~l~i~V~d~~~~~~-d  522 (569)
                      |+|+|++|++|+..   |.+||||++++++ ...++|+++++ .||.|||+|.|.+....  ...|.+.+||.+..++ .
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~-~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~   76 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ-VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI   76 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECC-EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence            78999999999976   7899999999975 35679999988 99999999999997532  3468888898876544 4


Q ss_pred             eeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEE
Q 008334          523 YMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW  560 (569)
Q Consensus       523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~  560 (569)
                      .+|.+.|.  .+..++..++||+|.+.     ..|+|++++.|
T Consensus        77 ~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          77 VIGKVALS--KLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEEEec--CcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            66665554  44446667999999764     37999999876

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.58  E-value=1.3e-14  Score=121.25  Aligned_cols=82  Identities=28%  Similarity=0.505  Sum_probs=70.2

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEEC------
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD------  331 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~------  331 (569)
                      |.|+|++|+||+     +.+||||++++.+.+  ..++||+++++|+||+|||+|.|.+.  ..+.|.+.|||+      
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence            579999999996     568999999997543  35799999999999999999999986  366999999998      


Q ss_pred             -CCCCCCcceEEEEEEcc
Q 008334          332 -EGIQSSELIGCAQVRLC  348 (569)
Q Consensus       332 -~~~~~d~~iG~~~i~l~  348 (569)
                       |..+.|+++|.+.+.|+
T Consensus        74 ~d~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          74 LDGEGTDAIMGKGQIQLD   91 (118)
T ss_pred             ccccCcccEEEEEEEEEC
Confidence             45678999988888775

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.58  E-value=2.2e-14  Score=126.12  Aligned_cols=105  Identities=27%  Similarity=0.333  Sum_probs=85.3

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC-C---eeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEE
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-E---TRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWD  515 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~-~---~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d  515 (569)
                      ..+.|.|+|++|+||+..+..|.+||||++++... .   .+++|++++++.||+|||+|.|.+..  .....|.|+|||
T Consensus        13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~   92 (138)
T cd08408          13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYN   92 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence            35889999999999999998899999999999532 1   35799999999999999999999973  355689999999


Q ss_pred             CCCCCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334          516 HDTFGK-DYMGRCILTLTRVILEGEYTDCFELD  547 (569)
Q Consensus       516 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (569)
                      .+..++ ++||++.+++...- ..+..+|+.+.
T Consensus        93 ~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l  124 (138)
T cd08408          93 KRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMK  124 (138)
T ss_pred             CCCCCCCcEEEEEEECCcCCC-chHHHHHHHHH
Confidence            988765 79999999987542 12235666653

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.58  E-value=1.4e-14  Score=124.63  Aligned_cols=92  Identities=32%  Similarity=0.430  Sum_probs=79.5

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEecc-CCCCEEEEEEEECCCCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDTFG  520 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~-~~~~~l~i~V~d~~~~~  520 (569)
                      ..+.|+|+|++|++|+. +..+.+||||++++++  .+++|++++++.||+|||+|.|.... .....|.|+|||++..+
T Consensus        26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~--~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s  102 (127)
T cd04032          26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG--QEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW  102 (127)
T ss_pred             CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC--ccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence            45899999999999984 5678899999999975  48899999999999999999997532 35678999999999986


Q ss_pred             C-ceeEEEEEecceeee
Q 008334          521 K-DYMGRCILTLTRVIL  536 (569)
Q Consensus       521 ~-d~lG~~~i~l~~l~~  536 (569)
                      + ++||++.++|.....
T Consensus       103 ~dd~IG~~~i~l~~~~~  119 (127)
T cd04032         103 DDDLLGTCSVVPEAGVH  119 (127)
T ss_pred             CCCeeEEEEEEecCCce
Confidence            5 799999999997653

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.57  E-value=8e-14  Score=121.62  Aligned_cols=119  Identities=25%  Similarity=0.404  Sum_probs=95.6

Q ss_pred             EEEEEEEEeeccccCC--CCCCCCcEEEEEEecCC---CCeEEeeecCCCC-CCeeccEEEEEEecCCCcEEEEEEEECC
Q 008334          259 TLEVKLVQAKGLTNKD--LIGKSDPYAVLFVRPLP---EKTKKSKTINNDL-NPIWNEHFEFIVEDESTQHLVVRIYDDE  332 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~-nP~wne~f~f~v~~~~~~~L~i~v~d~~  332 (569)
                      .|+|+|++|++|+..+  ..+.+||||++++...+   ...++|+++.++. ||+|||+|.|.+.......|.++|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            6899999999999887  57889999999996432   4578999887765 9999999999998666668999999999


Q ss_pred             CCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          333 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       333 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      .. ++++||.+.++++++..+.   .|++|....   ......|.|.+.+..
T Consensus        83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~~---~~~~~~~~l~v~~~~  127 (128)
T cd00275          83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDSK---GEPLELSTLFVHIDI  127 (128)
T ss_pred             CC-CCcEeEEEEEEhHHhcCce---EEEEecCCC---CCCCcceeEEEEEEE
Confidence            87 8999999999999996653   577775321   122456888887764

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.57  E-value=3.6e-15  Score=131.26  Aligned_cols=108  Identities=28%  Similarity=0.433  Sum_probs=92.7

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecCC--CcEEEEEEEE
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYD  330 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~v~d  330 (569)
                      +..|.|.|+|++|++|+..+..+.+||||++++.+.+.  ..++|++++++.||.|||+|.|.+....  ...|.|+|||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d   90 (134)
T cd00276          11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence            45689999999999999988888999999999975432  3678999999999999999999986542  5689999999


Q ss_pred             CCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          331 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       331 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      ++..+++++||.+.+++++  .+...+.|++|..
T Consensus        91 ~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~  122 (134)
T cd00276          91 KDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA  122 (134)
T ss_pred             cCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence            9988889999999999998  5566788988864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.55  E-value=4.3e-14  Score=121.70  Aligned_cols=99  Identities=27%  Similarity=0.374  Sum_probs=85.3

Q ss_pred             EEEEeEcCCCCCCCCCCCcEEEEEEeCCC-----eeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCC----C
Q 008334          449 TVILAENLPASDLMGKADPYVVLTMKKSE-----TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT----F  519 (569)
Q Consensus       449 ~v~~a~~L~~~~~~g~~dpyv~v~l~~~~-----~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~----~  519 (569)
                      ..++|++|+..+..|.+||||++++.+..     ..++|++++++.||+|||+|.|.+.....+.|.|+|||++.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            35889999999988999999999997643     35899999999999999999998764456789999999986    5


Q ss_pred             CC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334          520 GK-DYMGRCILTLTRVILEGEYTDCFELD  547 (569)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (569)
                      ++ ++||++.+++.++..+.....|++|.
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~  113 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK  113 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence            44 79999999999998877778899984

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=8.3e-14  Score=144.35  Aligned_cols=122  Identities=36%  Similarity=0.527  Sum_probs=105.5

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC-CeeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEECCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHDT  518 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~-~~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~~~  518 (569)
                      ....|.|+|.+|++|+..+..|.+||||++++... ..+.+|++.++|+||.|||+|.|.+..  .....|.++|||.|.
T Consensus       165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr  244 (421)
T KOG1028|consen  165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR  244 (421)
T ss_pred             cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence            45789999999999999997778999999999753 368899999999999999999999753  356789999999999


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEEcCCC------CCeEEEEEEEEeec
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQ  563 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~  563 (569)
                      +++ ++||.+.++|..+........|.++...      ..|+|.+.++|.|.
T Consensus       245 fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~  296 (421)
T KOG1028|consen  245 FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPT  296 (421)
T ss_pred             cccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecC
Confidence            987 7999999999988777667889998542      24799999999997

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.54  E-value=1e-13  Score=120.11  Aligned_cols=111  Identities=30%  Similarity=0.468  Sum_probs=90.3

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-c
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D  522 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d  522 (569)
                      ..|.|+|.+|+ |...+..+.+||||++++++ ...++|++++++.||.|||.|.|.+..  .+.|.|+|||++..+. +
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~-~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~   77 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDG-QPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADV   77 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECC-cccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCc
Confidence            36899999998 55555578899999999975 247899999999999999999999863  5789999999998865 7


Q ss_pred             eeEEEEEecceeeecce-----EeEEEEcCC------CCCeEEEEEE
Q 008334          523 YMGRCILTLTRVILEGE-----YTDCFELDG------TKSGKLKLHL  558 (569)
Q Consensus       523 ~lG~~~i~l~~l~~~~~-----~~~w~~L~~------~~~G~i~l~~  558 (569)
                      +||++.++|.++.....     ...|+++..      ...|++++++
T Consensus        78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            99999999999876532     246888842      3378888875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.53  E-value=1.8e-13  Score=119.36  Aligned_cols=114  Identities=27%  Similarity=0.417  Sum_probs=93.6

Q ss_pred             eEEEEEEEEeEcCCCCC--CCCCCCcEEEEEEeC----CCeeEeecccCCCC-CCeeceEEEEEeccCCCCEEEEEEEEC
Q 008334          444 GVLSVTVILAENLPASD--LMGKADPYVVLTMKK----SETRNKTRVVNDCL-NPIWNQTFDFVVEDGLHDMLIAEVWDH  516 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~--~~g~~dpyv~v~l~~----~~~~~~T~~~~~t~-nP~w~e~f~f~v~~~~~~~l~i~V~d~  516 (569)
                      -.|+|+|++|++|+..+  ..+.+||||++++.+    ...+++|+++.++. ||.|||+|.|.+..+....|.++|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            36899999999999877  578899999999953    23568999887765 999999999999866667899999999


Q ss_pred             CCCCCceeEEEEEecceeeecceEeEEEEcCC-----CCCeEEEEEEEE
Q 008334          517 DTFGKDYMGRCILTLTRVILEGEYTDCFELDG-----TKSGKLKLHLKW  560 (569)
Q Consensus       517 ~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~~~~  560 (569)
                      +..++++||++.++++++..+   ..|++|.+     ...|.|.+++++
T Consensus        82 ~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          82 DSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence            887557999999999998432   56788853     246899988875

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.52  E-value=4.1e-14  Score=165.79  Aligned_cols=121  Identities=14%  Similarity=0.294  Sum_probs=103.5

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCC-CcEEEEEEEECCC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDEG  333 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-~~~L~i~v~d~~~  333 (569)
                      .-.|.|+|+|++|+||.  +..|.+||||++.+++  .++.||++++++.||+|||+|.|.+.++. ++.+.++|||+|.
T Consensus      1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200       1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred             hCCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence            35799999999999998  4468999999999983  34678999999999999999999998774 4679999999999


Q ss_pred             CCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeE---EEEEEEEEe
Q 008334          334 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ---VHLELLYCP  386 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~---l~l~l~~~p  386 (569)
                      ++ ++.+|.+.+++.++..++....||+|.+      +++..|.   |++++.|.+
T Consensus      2053 f~-kd~~G~~~i~l~~vv~~~~~~~~~~L~~------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2053 FG-KSSLGKVTIQIDRVVMEGTYSGEYSLNP------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             cC-CCCCceEEEEHHHHhcCceeeeeeecCc------ccccCCCcceEEEEEEecC
Confidence            85 5599999999999999999999999953      2345666   999998853

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.51  E-value=1.2e-13  Score=116.95  Aligned_cols=91  Identities=26%  Similarity=0.446  Sum_probs=76.7

Q ss_pred             EEEEeeccccCCCCCCCCcEEEEEEecCC---CCeEEeeecCCCCCCeeccEEEEEEecCC----CcEEEEEEEECCCCC
Q 008334          263 KLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEGIQ  335 (569)
Q Consensus       263 ~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~----~~~L~i~v~d~~~~~  335 (569)
                      -.++|++|+..|..|.+||||++++.+..   ...++|++++++.||+|| +|.|.+....    .+.|.|+|||++..+
T Consensus         5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~   83 (110)
T cd04047           5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG   83 (110)
T ss_pred             EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence            34789999999999999999999987432   236899999999999999 6888764332    568999999999999


Q ss_pred             CCcceEEEEEEccccCCCc
Q 008334          336 SSELIGCAQVRLCELEPGK  354 (569)
Q Consensus       336 ~d~~iG~~~i~l~~l~~~~  354 (569)
                      +|++||++.++++++..+.
T Consensus        84 ~d~~iG~~~~~l~~l~~~~  102 (110)
T cd04047          84 KHDLIGEFETTLDELLKSS  102 (110)
T ss_pred             CCcEEEEEEEEHHHHhcCC
Confidence            9999999999999997544

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.49  E-value=5.2e-13  Score=111.62  Aligned_cols=105  Identities=24%  Similarity=0.392  Sum_probs=79.2

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECC-----
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD-----  517 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~-----  517 (569)
                      |.|+|++|+||+     +.+||||+++++..   ..+.+|+++++|+||+|||+|+|.+..  ...|.+.|||++     
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence            579999999995     45899999998642   357899999999999999999999973  668999999983     


Q ss_pred             --CCCC-ceeEEEEEecc--eeeecceEeEEEEcCCCCCeEEEEEEEE
Q 008334          518 --TFGK-DYMGRCILTLT--RVILEGEYTDCFELDGTKSGKLKLHLKW  560 (569)
Q Consensus       518 --~~~~-d~lG~~~i~l~--~l~~~~~~~~w~~L~~~~~G~i~l~~~~  560 (569)
                        ..++ +.+|++.+.|+  .+...+....-+.|.+-   +|.++++|
T Consensus        74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~~---~~~~s~~~  118 (118)
T cd08686          74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNGI---TVNLSIKF  118 (118)
T ss_pred             ccccCcccEEEEEEEEECHHHhccCCeeEEEEEecCE---EEEEEEeC
Confidence              3344 69988877764  34444555666666652   45555543

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.45  E-value=4.1e-13  Score=107.75  Aligned_cols=85  Identities=35%  Similarity=0.596  Sum_probs=76.1

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  339 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  339 (569)
                      |+|+|++|++|...+..+..||||++++.......++|+++.++.+|.|+|+|.|.+.....+.|.|+|||++..++|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            78999999999998888899999999998533356999999999999999999999887777789999999999988999


Q ss_pred             eEEEE
Q 008334          340 IGCAQ  344 (569)
Q Consensus       340 iG~~~  344 (569)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99873

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.41  E-value=1.5e-12  Score=110.28  Aligned_cols=89  Identities=26%  Similarity=0.510  Sum_probs=74.7

Q ss_pred             EEEEEeEcCCCCCCCCCCCcEEEEEEeCCC----eeEeecccCCCCCCeeceEEEEEeccC----CCCEEEEEEEECCCC
Q 008334          448 VTVILAENLPASDLMGKADPYVVLTMKKSE----TRNKTRVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEVWDHDTF  519 (569)
Q Consensus       448 v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~----~~~~T~~~~~t~nP~w~e~f~f~v~~~----~~~~l~i~V~d~~~~  519 (569)
                      +..++|++|+..+..|.+||||++++.+..    ..++|++++++.||.|| .|.|.+...    ....|.|+|||++..
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            346799999999999999999999986532    46899999999999999 688876532    256899999999998


Q ss_pred             CC-ceeEEEEEecceeeec
Q 008334          520 GK-DYMGRCILTLTRVILE  537 (569)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~  537 (569)
                      ++ ++||+++++++++...
T Consensus        83 ~~d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          83 GKHDLIGEFETTLDELLKS  101 (110)
T ss_pred             CCCcEEEEEEEEHHHHhcC
Confidence            76 7999999999999743

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=7.1e-13  Score=135.13  Aligned_cols=113  Identities=33%  Similarity=0.662  Sum_probs=96.9

Q ss_pred             ccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCC-
Q 008334          441 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF-  519 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~-  519 (569)
                      ..+..++++|.+|.+|.+.|..|++||||.+.++.  .+.+|+++...+||+|||.|.|.+.+ ..+.|.+.|||+|.. 
T Consensus       292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~k--tkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dl  368 (1283)
T KOG1011|consen  292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK--TKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDL  368 (1283)
T ss_pred             ccceeeEEeeeecccceecccCCCCCCcEEEeecc--cchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccH
Confidence            46789999999999999999999999999999976  77899999999999999999999996 567899999998742 


Q ss_pred             -----------CCceeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEE
Q 008334          520 -----------GKDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHL  558 (569)
Q Consensus       520 -----------~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~  558 (569)
                                 ++||||+..|.+..+  .++++-||+|+..     -+|.|++.+
T Consensus       369 ksklrqkl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhi  421 (1283)
T KOG1011|consen  369 KSKLRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHI  421 (1283)
T ss_pred             HHHHHHHhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEE
Confidence                       457999999998876  4668999999753     367666544

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.36  E-value=6.5e-12  Score=100.69  Aligned_cols=83  Identities=46%  Similarity=0.802  Sum_probs=74.1

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC-eeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ce
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKKSE-TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY  523 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~-~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~  523 (569)
                      |+|+|++|++|+..+..+.+||||++++++.. ..++|++++++.+|.|+|+|.|.+..+..+.|.|+|||++..++ ++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            78999999999998888899999999998633 46899999999999999999999887777779999999999885 69


Q ss_pred             eEEEE
Q 008334          524 MGRCI  528 (569)
Q Consensus       524 lG~~~  528 (569)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99874

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=2e-12  Score=131.96  Aligned_cols=121  Identities=31%  Similarity=0.592  Sum_probs=101.0

Q ss_pred             ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC-
Q 008334          256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI-  334 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~-  334 (569)
                      =...++++|+.|.+|..+|..|++||||.+.++   +.+.+|+++...+||+|||.|.|..++. ++.+.+.|||.|.. 
T Consensus       293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~---ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dl  368 (1283)
T KOG1011|consen  293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG---KTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDL  368 (1283)
T ss_pred             cceeeEEeeeecccceecccCCCCCCcEEEeec---ccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccH
Confidence            357899999999999999999999999999998   7788999999999999999999999864 66899999998742 


Q ss_pred             ----------CCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          335 ----------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       335 ----------~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                                ..|||+|+..+.+..|..  ..+.|+.|.++..   ....+|.|++.+...
T Consensus       369 ksklrqkl~resddflgqtvievrtlsg--emdvwynlekrtd---ksavsgairlhisve  424 (1283)
T KOG1011|consen  369 KSKLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTD---KSAVSGAIRLHISVE  424 (1283)
T ss_pred             HHHHHHHhhhcccccccceeEEEEeccc--chhhhcchhhccc---hhhccceEEEEEEEE
Confidence                      358999999999887743  4679999986542   445678776666543

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.32  E-value=1.7e-12  Score=139.12  Aligned_cols=91  Identities=27%  Similarity=0.404  Sum_probs=79.2

Q ss_pred             EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCC
Q 008334          258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  337 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d  337 (569)
                      -..+|.|++|-+|.+.|.+|.+|||+++.++. ....-++..+.+|+||+|.+.|.+....+....+.++|||+|..+.|
T Consensus       613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk-~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d  691 (1105)
T KOG1326|consen  613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGK-KRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD  691 (1105)
T ss_pred             eeEEEEEEEeeeccccCCCCCcCceeeeeecc-chhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence            35679999999999999999999999999982 11225677789999999999999988877777899999999999999


Q ss_pred             cceEEEEEEccc
Q 008334          338 ELIGCAQVRLCE  349 (569)
Q Consensus       338 ~~iG~~~i~l~~  349 (569)
                      +.||+..++|+.
T Consensus       692 ~~iget~iDLEn  703 (1105)
T KOG1326|consen  692 EKIGETTIDLEN  703 (1105)
T ss_pred             chhhceehhhhh
Confidence            999999999875

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.30  E-value=1.7e-11  Score=105.53  Aligned_cols=95  Identities=20%  Similarity=0.357  Sum_probs=79.8

Q ss_pred             EEEEEEEeeccccC--CCCCC--CCcEEEEEEecCCCCeEEeeecCCCCC--CeeccEEEEEEecC--------------
Q 008334          260 LEVKLVQAKGLTNK--DLIGK--SDPYAVLFVRPLPEKTKKSKTINNDLN--PIWNEHFEFIVEDE--------------  319 (569)
Q Consensus       260 L~V~v~~a~~L~~~--d~~g~--~dpyv~v~~~~~~~~~~kT~~~~~t~n--P~wne~f~f~v~~~--------------  319 (569)
                      |+|.|.+|++++..  +..|.  +||||+..+.+....+++|.+..+++|  |.||+.|.|.+..+              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            78999999996643  33564  999999999865567789999999999  99999999887641              


Q ss_pred             ---------CCcEEEEEEEECCCCCCCcceEEEEEEccccCCCc
Q 008334          320 ---------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK  354 (569)
Q Consensus       320 ---------~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~  354 (569)
                               ....|.++|||+|.+++|++||.+.++|..+..+.
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                     24579999999999999999999999999886654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.28  E-value=4.1e-11  Score=99.05  Aligned_cols=96  Identities=38%  Similarity=0.655  Sum_probs=81.9

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  339 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  339 (569)
                      +.|+|++|++|......+..+|||++++.+.+...++|+++.++.||.|||+|.|.+.....+.|.++|||++..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            67999999999987765678999999998322257899999988999999999999987657799999999998777899


Q ss_pred             eEEEEEEccccCCCce
Q 008334          340 IGCAQVRLCELEPGKV  355 (569)
Q Consensus       340 iG~~~i~l~~l~~~~~  355 (569)
                      +|.+.+++.++..+..
T Consensus        82 ~G~~~~~l~~~~~~~~   97 (101)
T smart00239       82 IGQVTIPLSDLLLGGR   97 (101)
T ss_pred             eEEEEEEHHHcccCcc
Confidence            9999999998876543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=99.27  E-value=3.7e-11  Score=99.06  Aligned_cols=101  Identities=39%  Similarity=0.725  Sum_probs=86.3

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL  339 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~  339 (569)
                      |.|+|++|++|......+..+|||.+.+..  ...++|+++.++.||.|||.|.|.+.......+.++||+++..+.+.+
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   78 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF   78 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence            468999999998866677899999999972  377899999999999999999999986456789999999998877899


Q ss_pred             eEEEEEEccccC-CCceeEEEEEc
Q 008334          340 IGCAQVRLCELE-PGKVKDVWLKL  362 (569)
Q Consensus       340 iG~~~i~l~~l~-~~~~~~~~~~L  362 (569)
                      +|.+.+++.++. .......|++|
T Consensus        79 ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          79 LGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             eEEEEEeHHHhhhcCCcCcceecC
Confidence            999999999987 66666677653

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.26  E-value=2.9e-11  Score=104.12  Aligned_cols=93  Identities=27%  Similarity=0.382  Sum_probs=78.0

Q ss_pred             EEEEEEEeEcCCCC--CCCCC--CCcEEEEEEeCC-CeeEeecccCCCCC--CeeceEEEEEeccC--------------
Q 008334          446 LSVTVILAENLPAS--DLMGK--ADPYVVLTMKKS-ETRNKTRVVNDCLN--PIWNQTFDFVVEDG--------------  504 (569)
Q Consensus       446 L~v~v~~a~~L~~~--~~~g~--~dpyv~v~l~~~-~~~~~T~~~~~t~n--P~w~e~f~f~v~~~--------------  504 (569)
                      |+|.|.+|++++..  +..|.  +||||+.++.+. ..+++|.+.++++|  |.||+.|.|++..+              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            79999999996654  33564  999999999764 57899999999999  99999999987641              


Q ss_pred             ---------CCCEEEEEEEECCCCCC-ceeEEEEEecceeeecc
Q 008334          505 ---------LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG  538 (569)
Q Consensus       505 ---------~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~  538 (569)
                               ....|.++|||+|.++. |+||.++++|..+....
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                     24589999999999875 79999999999887654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.25  E-value=4e-12  Score=136.29  Aligned_cols=92  Identities=32%  Similarity=0.500  Sum_probs=82.4

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  521 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~  521 (569)
                      ..-.++|++.+|-+|...|.+|..|||+++.+|++...-+...+.+|+||+|++.|++.+..+....++++|||+|..+.
T Consensus       611 i~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~  690 (1105)
T KOG1326|consen  611 IKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ  690 (1105)
T ss_pred             ceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence            34568899999999999999999999999999975555677888999999999999999998888889999999999875


Q ss_pred             -ceeEEEEEecce
Q 008334          522 -DYMGRCILTLTR  533 (569)
Q Consensus       522 -d~lG~~~i~l~~  533 (569)
                       +.+|+..++|+.
T Consensus       691 d~~iget~iDLEn  703 (1105)
T KOG1326|consen  691 DEKIGETTIDLEN  703 (1105)
T ss_pred             cchhhceehhhhh
Confidence             699999999875

>PLN02270 phospholipase D alpha

Probab=99.22  E-value=1.1e-10  Score=125.90  Aligned_cols=122  Identities=19%  Similarity=0.372  Sum_probs=104.3

Q ss_pred             cceEEEEEEEEeEcCCCCC------------------CCCCCCcEEEEEEeCCCeeEeecccCCC-CCCeeceEEEEEec
Q 008334          442 IRGVLSVTVILAENLPASD------------------LMGKADPYVVLTMKKSETRNKTRVVNDC-LNPIWNQTFDFVVE  502 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~------------------~~g~~dpyv~v~l~~~~~~~~T~~~~~t-~nP~w~e~f~f~v~  502 (569)
                      --|.|.++|.+|++|+..+                  ..+.+||||.|.+++ ....||+++.+. .||.|+|+|.+.|.
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-a~v~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK-ARVGRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC-cEEEEEeecCCCCCCCccccceEEeec
Confidence            4589999999999998631                  124679999999985 678899999874 69999999999998


Q ss_pred             cCCCCEEEEEEEECCCCCCceeEEEEEecceeeecceEeEEEEcCCC------CCeEEEEEEEEeecCC
Q 008334          503 DGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQPI  565 (569)
Q Consensus       503 ~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~~~  565 (569)
                      ... ..++|.|+|.+.++..+||.+.||..++..+...+.||++-+.      +..+|+++++|.|...
T Consensus        85 h~~-~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~  152 (808)
T PLN02270         85 HMA-SNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK  152 (808)
T ss_pred             cCc-ceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence            754 6799999999999989999999999999999889999998542      2459999999999754

>PLN02270 phospholipase D alpha

Probab=99.20  E-value=1.8e-10  Score=124.45  Aligned_cols=128  Identities=23%  Similarity=0.432  Sum_probs=105.6

Q ss_pred             cEEEEEEEEEeeccccCC------------------CCCCCCcEEEEEEecCCCCeEEeeecCCC-CCCeeccEEEEEEe
Q 008334          257 VGTLEVKLVQAKGLTNKD------------------LIGKSDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIVE  317 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~kT~~~~~t-~nP~wne~f~f~v~  317 (569)
                      .|.|.|+|.+|++|++.+                  ..+.+||||.+.++  +.+..||+++.+. .||+|+|+|.+.+.
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~a~v~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE--KARVGRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC--CcEEEEEeecCCCCCCCccccceEEeec
Confidence            599999999999998631                  12467999999998  4678999999875 59999999999998


Q ss_pred             cCCCcEEEEEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEecCCC
Q 008334          318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME  390 (569)
Q Consensus       318 ~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~  390 (569)
                      ... ..+.|.|.|.+.++ ..+||.+.+|..++..+...+.|+++....  .+..+....|+++++|.|....
T Consensus        85 h~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~--~~p~~~~~~~~~~~~f~~~~~~  153 (808)
T PLN02270         85 HMA-SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDND--KNPIHGGSKIHVKLQYFEVTKD  153 (808)
T ss_pred             cCc-ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCC--CCcCCCCCEEEEEEEEEEcccC
Confidence            765 48999999999886 469999999999999999999999997543  2223344589999999997653

>cd00030 C2 C2 domain

Probab=99.18  E-value=1.9e-10  Score=94.71  Aligned_cols=100  Identities=46%  Similarity=0.761  Sum_probs=85.2

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-cee
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM  524 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l  524 (569)
                      |.|.|++|++|......+..+|||.+.+.+ ...++|+++.++.||.||+.|.|.+.......+.|+||+.+..+. .++
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~-~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~i   79 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG-KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFL   79 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc-CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCcee
Confidence            468999999998866677899999999975 467899999999999999999999986456789999999988764 799


Q ss_pred             EEEEEecceee-ecceEeEEEEc
Q 008334          525 GRCILTLTRVI-LEGEYTDCFEL  546 (569)
Q Consensus       525 G~~~i~l~~l~-~~~~~~~w~~L  546 (569)
                      |++.+++.++. ......+|++|
T Consensus        80 g~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          80 GEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEEeHHHhhhcCCcCcceecC
Confidence            99999999987 55566788765

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.18  E-value=6e-11  Score=123.22  Aligned_cols=120  Identities=24%  Similarity=0.347  Sum_probs=105.0

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCce
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY  523 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~  523 (569)
                      ..|.|.|.+|+||++.+..|..||||.|.+.. +...||.++.+++.|.|.|.|.|.+.. .-..|.|-|||+|...++.
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~-E~v~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d~~~D~~   82 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQ-EEVCRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRDLKRDDI   82 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecc-hhhhhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccccccccc
Confidence            45899999999999999999999999999974 678999999999999999999999984 4567999999999433479


Q ss_pred             eEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEEeecCC
Q 008334          524 MGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKWMPQPI  565 (569)
Q Consensus       524 lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~p~~~  565 (569)
                      ||.+.|.-+++......+.||.|...     -.|+|++++++.+...
T Consensus        83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~  129 (800)
T KOG2059|consen   83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ  129 (800)
T ss_pred             cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccC
Confidence            99999999999877777999999754     2799999999988643

>PLN02223 phosphoinositide phospholipase C

Probab=99.17  E-value=4.8e-10  Score=116.48  Aligned_cols=105  Identities=26%  Similarity=0.370  Sum_probs=85.8

Q ss_pred             cEEEEEEEEEeecccc-----CCCCCCCCcEEEEEEe--cCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEE
Q 008334          257 VGTLEVKLVQAKGLTN-----KDLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY  329 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~-----~d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~  329 (569)
                      ...|.|+|+.|+++..     .+.....||||+|.+.  +.+...++|++.+++.||+|||+|.|.+..++-..|+|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            3679999999998751     1223457999999996  23344677888899999999999999999887778999999


Q ss_pred             ECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      |+|..+.|+++|++.+|+..|..|-   .+++|..
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~  519 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLYD  519 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCc---eeEeccC
Confidence            9998888999999999999999876   4556653

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.17  E-value=3e-10  Score=93.80  Aligned_cols=94  Identities=41%  Similarity=0.787  Sum_probs=80.2

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC-eeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ce
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKKSE-TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY  523 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~-~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~  523 (569)
                      +.+.|++|++|......+..+|||++++.... ...+|+.+.++.||.|||.|.|.+.......|.|+|||++..+. .+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            67899999999987665678999999997531 57899999999999999999999986657889999999987764 69


Q ss_pred             eEEEEEecceeeecce
Q 008334          524 MGRCILTLTRVILEGE  539 (569)
Q Consensus       524 lG~~~i~l~~l~~~~~  539 (569)
                      +|.+.+++.++..+..
T Consensus        82 ~G~~~~~l~~~~~~~~   97 (101)
T smart00239       82 IGQVTIPLSDLLLGGR   97 (101)
T ss_pred             eEEEEEEHHHcccCcc
Confidence            9999999999866543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1

Probab=99.13  E-value=3.5e-10  Score=91.51  Aligned_cols=85  Identities=22%  Similarity=0.356  Sum_probs=73.0

Q ss_pred             HHHHHHHhH-HHH-HHHHHHHHHhHHHHHhh-cCCCccceEEEEEEecCCCCCeEEEEEEEEc-CCCeEEEEEEEEEecC
Q 008334           71 NHHLEKLWP-YVN-EAASELIKSSVEPVLEQ-YRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELEMQWDAN  146 (569)
Q Consensus        71 N~~l~~~W~-~~~-~~~~~~~~~~~~~~l~~-~~p~~i~~i~~~~~~lG~~~P~i~~i~~~~~-~~~~~~le~~~~~~~~  146 (569)
                      |.++++++- +++ +.+.+.+++.++..|++ .+|+|+++|++++++||+.||.|+++++.+. .++++.+|++++|.|+
T Consensus         1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~   80 (91)
T PF10296_consen    1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG   80 (91)
T ss_pred             ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence            677887665 443 67999999999999997 5699999999999999999999999999865 4455999999999999


Q ss_pred             ceEEEEEEe
Q 008334          147 SSIILAIKT  155 (569)
Q Consensus       147 ~~i~l~~~~  155 (569)
                      ..+.++++.
T Consensus        81 ~~l~l~t~l   89 (91)
T PF10296_consen   81 FSLTLETKL   89 (91)
T ss_pred             eEEEEEEEE
Confidence            988888763

These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].

>PLN02952 phosphoinositide phospholipase C

Probab=99.08  E-value=1.9e-09  Score=114.57  Aligned_cols=105  Identities=25%  Similarity=0.393  Sum_probs=86.3

Q ss_pred             cEEEEEEEEEeeccccC------CCCCCCCcEEEEEEe--cCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEE
Q 008334          257 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI  328 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v  328 (569)
                      ...|.|+|+.|.+++..      +.....||||++.+-  +....+++|+++.++.||+|||+|.|.+..++-..++|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46899999999987521      112335999999986  2334567899999999999999999999877767899999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      ||+|..+.++++|++.+|+..|..|.   .|++|..
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~  581 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD  581 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence            99998888999999999999999886   4888853

>PLN02223 phosphoinositide phospholipase C

Probab=99.06  E-value=1.8e-09  Score=112.25  Aligned_cols=115  Identities=23%  Similarity=0.367  Sum_probs=90.3

Q ss_pred             ceEEEEEEEEeEcCCCC-----CCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEE
Q 008334          443 RGVLSVTVILAENLPAS-----DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW  514 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~-----~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~  514 (569)
                      ...|.|+|+.|.+++..     +....+||||+|.+.+   ...+++|.+..++.||+|||+|+|.+..+.-+.|.|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            46799999999988521     2234579999999964   234567877788999999999999999888889999999


Q ss_pred             ECCCCCC-ceeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEE
Q 008334          515 DHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW  560 (569)
Q Consensus       515 d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~  560 (569)
                      |+|..++ +++|+..+|++.+..+   .++++|.+.     ..-+|.+.++|
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~G---yR~VpL~~~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEG---IRAVPLYDERGKACSSTMLLTRFKW  536 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCC---ceeEeccCCCcCCCCCceEEEEEEe
Confidence            9998754 7999999999998665   455676433     24567777776

>PLN02228 Phosphoinositide phospholipase C

Probab=98.97  E-value=6.3e-09  Score=110.00  Aligned_cols=122  Identities=22%  Similarity=0.315  Sum_probs=97.2

Q ss_pred             ceEEEEEEEEeEcCCC----C--CCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCee-ceEEEEEeccCCCCEEEEE
Q 008334          443 RGVLSVTVILAENLPA----S--DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIW-NQTFDFVVEDGLHDMLIAE  512 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~----~--~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w-~e~f~f~v~~~~~~~l~i~  512 (569)
                      ...|.|+|+.|.+|+.    .  +.....||||+|.+.+   ...+++|++++++.||+| ||+|+|.+..+.-+.|.|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            4579999999998742    1  1123479999999864   234678999888899999 9999999998888899999


Q ss_pred             EEECCCCCC-ceeEEEEEecceeeecceEeEEEEcCC---C--CCeEEEEEEEEeecCCCC
Q 008334          513 VWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG---T--KSGKLKLHLKWMPQPIYR  567 (569)
Q Consensus       513 V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~---~--~~G~i~l~~~~~p~~~~~  567 (569)
                      |+|++..+. +++|+..||++.+..+   .+.++|.+   .  ....|.+.+.+.+.++||
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~G---YR~VpL~~~~G~~l~~atLfv~~~~~~~~~~~  567 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSG---VRAVRLHDRAGKAYKNTRLLVSFALDPPYTFR  567 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCC---eeEEEccCCCCCCCCCeEEEEEEEEcCccccC
Confidence            999987654 7999999999998655   34556643   2  357899999999999997

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.97  E-value=8e-09  Score=109.67  Aligned_cols=105  Identities=22%  Similarity=0.288  Sum_probs=84.9

Q ss_pred             cEEEEEEEEEeecccc--C----CCCCCCCcEEEEEEec--CCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEE
Q 008334          257 VGTLEVKLVQAKGLTN--K----DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI  328 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~--~----d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v  328 (569)
                      ..+|.|+|+.+.++..  .    +.....||||+|.+-.  .....++|++..++.||+|||+|.|.+..++-..|+|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            4689999999998642  1    2223479999999963  233457888889999999999999999887777899999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      +|+|...+|+++|++.+|+..|..|-.   .++|..
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~  580 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFN  580 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCccc---eEeccC
Confidence            999988889999999999999988763   456643

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.95  E-value=7.7e-09  Score=106.60  Aligned_cols=183  Identities=23%  Similarity=0.345  Sum_probs=130.4

Q ss_pred             CeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC----CCCcceEEEEEEccccCCCceeEEEEEccccccc
Q 008334          293 KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI----QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV  368 (569)
Q Consensus       293 ~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~----~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~  368 (569)
                      +..+|.++.+.+||.|.+.|.+.......|.++++++|.+..    ...+++|++.+.+..+........-+.+.     
T Consensus        41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~-----  115 (529)
T KOG1327|consen   41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLK-----  115 (529)
T ss_pred             cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcc-----
Confidence            345889999999999999998887777788999999997643    45799999999999887544322211111     


Q ss_pred             cCCCcceeEEEEEEEEEecCCCCCcCCCCCCCCChhhHHHHhhcCcccccCCCCCccccccchhhhccccccccceEEEE
Q 008334          369 QRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSV  448 (569)
Q Consensus       369 ~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v  448 (569)
                      .......|+|.+..+=.                                                       .......-
T Consensus       116 ~~~~~~~g~iti~aee~-------------------------------------------------------~~~~~~~~  140 (529)
T KOG1327|consen  116 PGKNAGSGTITISAEED-------------------------------------------------------ESDNDVVQ  140 (529)
T ss_pred             cCccCCcccEEEEeecc-------------------------------------------------------cccCceee
Confidence            11223455665544311                                                       00111222


Q ss_pred             EEEEeEcCCCCCCCCCCCcEEEEEEe--CC--CeeEeecccCCCCCCeeceEEEEEecc----CCCCEEEEEEEECCCCC
Q 008334          449 TVILAENLPASDLMGKADPYVVLTMK--KS--ETRNKTRVVNDCLNPIWNQTFDFVVED----GLHDMLIAEVWDHDTFG  520 (569)
Q Consensus       449 ~v~~a~~L~~~~~~g~~dpyv~v~l~--~~--~~~~~T~~~~~t~nP~w~e~f~f~v~~----~~~~~l~i~V~d~~~~~  520 (569)
                      -..+|++|..++..+++|||..++-.  .+  ...++|.+++++++|.|.+ |......    ..+..+.+.+||++..+
T Consensus       141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~  219 (529)
T KOG1327|consen  141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG  219 (529)
T ss_pred             eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC
Confidence            35669999999999999999998853  21  2468999999999999985 3443321    12467899999999988


Q ss_pred             C-ceeEEEEEecceeee
Q 008334          521 K-DYMGRCILTLTRVIL  536 (569)
Q Consensus       521 ~-d~lG~~~i~l~~l~~  536 (569)
                      + +++|++..++.++..
T Consensus       220 ~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  220 KHDLIGKFQTTLSELQE  236 (529)
T ss_pred             CcCceeEecccHHHhcc
Confidence            7 899999999988754

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.95  E-value=1.8e-10  Score=119.44  Aligned_cols=127  Identities=34%  Similarity=0.614  Sum_probs=103.6

Q ss_pred             ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC----------------------------CeEEeeecCCCCCCe
Q 008334          256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE----------------------------KTKKSKTINNDLNPI  307 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----------------------------~~~kT~~~~~t~nP~  307 (569)
                      |.-.+.|.+.+|+||.++|.+|.+|||+...+.+...                            -.+-|++.+.|+||+
T Consensus       112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk  191 (1103)
T KOG1328|consen  112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK  191 (1103)
T ss_pred             CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence            4455677888999999999999999999998864210                            024688889999999


Q ss_pred             eccEEEEEEecCCCcEEEEEEEECCCC---------------------------------CC---CcceEEEEEEccccC
Q 008334          308 WNEHFEFIVEDESTQHLVVRIYDDEGI---------------------------------QS---SELIGCAQVRLCELE  351 (569)
Q Consensus       308 wne~f~f~v~~~~~~~L~i~v~d~~~~---------------------------------~~---d~~iG~~~i~l~~l~  351 (569)
                      |+|.|.|.+.+..++.+.+.+||+|.-                                 +.   |||+|+..+|+.++.
T Consensus       192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP  271 (1103)
T KOG1328|consen  192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP  271 (1103)
T ss_pred             hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence            999999999999999999999998731                                 22   899999999999987


Q ss_pred             CCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334          352 PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       352 ~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      ... .+.|++|.++.   ...+..|.+++.+...-
T Consensus       272 ~~G-ld~WFkLepRS---~~S~VqG~~~LklwLsT  302 (1103)
T KOG1328|consen  272 PDG-LDQWFKLEPRS---DKSKVQGQVKLKLWLST  302 (1103)
T ss_pred             cch-HHHHhccCccc---ccccccceEEEEEEEee
Confidence            543 68999998653   35678899999998753

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.92  E-value=2e-08  Score=106.46  Aligned_cols=105  Identities=23%  Similarity=0.308  Sum_probs=84.5

Q ss_pred             cEEEEEEEEEeeccc----cC--CCCCCCCcEEEEEEe--cCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEE
Q 008334          257 VGTLEVKLVQAKGLT----NK--DLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI  328 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~----~~--d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v  328 (569)
                      ...|.|+|+.+.++.    ..  +.....||||+|.+.  +....+++|+++.++.||+|||+|.|.+..++-..|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            467999999998753    11  122457999999996  3334567899999989999999999999877777899999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      +|+|..+.|+++|++.+|+..|..|-.   .++|..
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~  563 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHS  563 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCccc---eEEccC
Confidence            999987889999999999999988753   456643

>PLN02952 phosphoinositide phospholipase C

Probab=98.91  E-value=1.5e-08  Score=107.94  Aligned_cols=115  Identities=23%  Similarity=0.355  Sum_probs=89.0

Q ss_pred             ceEEEEEEEEeEcCCCC------CCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEE
Q 008334          443 RGVLSVTVILAENLPAS------DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV  513 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~------~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V  513 (569)
                      ...|.|.|+.|.+++..      +....+||||+|.+.+   ...+.+|+++.++.||+|||+|+|.+..+.-+.+.|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46799999999987532      1123359999999864   23567899999999999999999999987778899999


Q ss_pred             EECCCCCC-ceeEEEEEecceeeecceEeEEEEcCC---CC--CeEEEEEEEE
Q 008334          514 WDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG---TK--SGKLKLHLKW  560 (569)
Q Consensus       514 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~---~~--~G~i~l~~~~  560 (569)
                      +|+|..++ +++|++.+|++.+..+-   +|++|.+   ..  .-.+.+.+.|
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f~~  598 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRFIF  598 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEEEe
Confidence            99988765 79999999999986653   5888863   33  3344555554

>PLN02228 Phosphoinositide phospholipase C

Probab=98.90  E-value=2.7e-08  Score=105.29  Aligned_cols=124  Identities=19%  Similarity=0.247  Sum_probs=94.0

Q ss_pred             cEEEEEEEEEeecccc---C---CCCCCCCcEEEEEEec--CCCCeEEeeecCCCCCCee-ccEEEEEEecCCCcEEEEE
Q 008334          257 VGTLEVKLVQAKGLTN---K---DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR  327 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~---~---d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~L~i~  327 (569)
                      ...|+|+|++|.+|+-   .   +.....||||++.+..  .+...++|++++++.||+| ||+|.|.+..++-.-|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            3579999999998731   1   1123479999999863  3345689999988899999 9999999988777789999


Q ss_pred             EEECCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334          328 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       328 v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      |+|+|..+.|+++|++.+|+..|..|-.   .++|....   ...-...+|.+.+.+.+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~---G~~l~~atLfv~~~~~~  562 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRA---GKAYKNTRLLVSFALDP  562 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCC---CCCCCCeEEEEEEEEcC
Confidence            9999988889999999999999988753   45664322   11223456777777754

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.88  E-value=6.3e-09  Score=83.91  Aligned_cols=86  Identities=22%  Similarity=0.330  Sum_probs=71.2

Q ss_pred             EEEEEEEeEcCCCCC---CCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCc
Q 008334          446 LSVTVILAENLPASD---LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD  522 (569)
Q Consensus       446 L~v~v~~a~~L~~~~---~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d  522 (569)
                      |.|+|+.|+++...+   ..+.++|||.+++++ ..+.||++   +.||.|||.|.|.+.  ....+.+.|||+.....-
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved-~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~~   74 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVED-VERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQPV   74 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECC-EEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCCeec
Confidence            578999999998776   677899999999985 45788875   589999999999995  367899999998653224


Q ss_pred             eeEEEEEecceeeec
Q 008334          523 YMGRCILTLTRVILE  537 (569)
Q Consensus       523 ~lG~~~i~l~~l~~~  537 (569)
                      .+|..-+.+++|..+
T Consensus        75 Pi~llW~~~sdi~Ee   89 (109)
T cd08689          75 PVGLLWLRLSDIAEE   89 (109)
T ss_pred             ceeeehhhHHHHHHH
Confidence            799999999988754

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.86  E-value=2e-08  Score=106.72  Aligned_cols=115  Identities=24%  Similarity=0.379  Sum_probs=89.3

Q ss_pred             ceEEEEEEEEeEcCCCC------CCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEE
Q 008334          443 RGVLSVTVILAENLPAS------DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV  513 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~------~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V  513 (569)
                      ...|.|+|+.|.+++..      +....+||||+|.+.+   ...+.+|++..++.||+|||+|+|.+..++-+.|.|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46799999999987532      1223479999999964   23457888888999999999999999988888999999


Q ss_pred             EECCCCCC-ceeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEE
Q 008334          514 WDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW  560 (569)
Q Consensus       514 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~  560 (569)
                      +|++..++ +++|+..||+.++..+   .+.++|.+.     ..-.|.+.++|
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~G---yR~V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQG---IHAVPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCc---cceEeccCCCcCCCCCCeeEEEEEe
Confidence            99998654 7999999999998665   345566433     23467777766

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.85  E-value=1.8e-08  Score=106.90  Aligned_cols=121  Identities=23%  Similarity=0.373  Sum_probs=91.5

Q ss_pred             EEEEEEEEeeccccCC----CCCCCCcEEEEEEe--cCCCCeEEee-ecCCCCCCeeccEEEEEEecCCCcEEEEEEEEC
Q 008334          259 TLEVKLVQAKGLTNKD----LIGKSDPYAVLFVR--PLPEKTKKSK-TINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  331 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d----~~g~~dpyv~v~~~--~~~~~~~kT~-~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~  331 (569)
                      +|.|+|+++.++...-    ....+||||.|.+-  |......+|+ +..++.||.|+|+|+|.+..++-.-|+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            6999999999766432    12457999999985  2333467888 568899999999999999988888899999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                      |..++|+|+|+..+|+..|..|-.+   ++|....   ...-...+|.+.+.+.
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~---G~~~~~asLfv~i~~~  744 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLSRE---GEALSSASLFVRIAIV  744 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceee---eeecCCC---CccccceeEEEEEEEe
Confidence            9999999999999999999887643   4554321   1222344566665553

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.83  E-value=1.2e-08  Score=82.32  Aligned_cols=85  Identities=24%  Similarity=0.417  Sum_probs=69.3

Q ss_pred             EEEEEEEeeccccCC---CCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCC
Q 008334          260 LEVKLVQAKGLTNKD---LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  336 (569)
Q Consensus       260 L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~  336 (569)
                      |.|+|..|+|+...+   ..+.+||||.+.++  +.++.||++   +.||.|||+|.|.+.  ....+.+.|||+... .
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~-~   72 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--DVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGD-Q   72 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEEC--CEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCC-e
Confidence            578999999999877   56889999999998  345788876   579999999999995  356899999998653 4


Q ss_pred             CcceEEEEEEccccCC
Q 008334          337 SELIGCAQVRLCELEP  352 (569)
Q Consensus       337 d~~iG~~~i~l~~l~~  352 (569)
                      .--+|..-+.+++|..
T Consensus        73 ~~Pi~llW~~~sdi~E   88 (109)
T cd08689          73 PVPVGLLWLRLSDIAE   88 (109)
T ss_pred             ecceeeehhhHHHHHH
Confidence            5678888888887743

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.81  E-value=5.2e-08  Score=103.42  Aligned_cols=115  Identities=24%  Similarity=0.359  Sum_probs=88.7

Q ss_pred             ceEEEEEEEEeEcCCC----C--CCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEE
Q 008334          443 RGVLSVTVILAENLPA----S--DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV  513 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~----~--~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V  513 (569)
                      ...|.|+|+.|.+++.    .  +.....||||+|.+.+   ...+.+|+++.++.||+|||+|+|.+..+.-+.|.|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            4679999999987532    1  1223579999999963   23567899999989999999999999888888999999


Q ss_pred             EECCCCCC-ceeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEE
Q 008334          514 WDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW  560 (569)
Q Consensus       514 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~  560 (569)
                      +|+|..+. +++|+..+|++.+..+   -+.++|.+.     ..-.+.+.+.|
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~G---yR~V~L~~~~g~~l~~a~Lfv~~~~  580 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQG---IRAFPLHSRKGEKYKSVKLLVKVEF  580 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCc---cceEEccCCCcCCCCCeeEEEEEEe
Confidence            99987654 7999999999998665   345566433     24467777765

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.80  E-value=2.5e-08  Score=105.86  Aligned_cols=118  Identities=23%  Similarity=0.374  Sum_probs=91.4

Q ss_pred             EEEEEEEEeEcCCCCC----CCCCCCcEEEEEEeC---CCeeEeec-ccCCCCCCeeceEEEEEeccCCCCEEEEEEEEC
Q 008334          445 VLSVTVILAENLPASD----LMGKADPYVVLTMKK---SETRNKTR-VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDH  516 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~----~~g~~dpyv~v~l~~---~~~~~~T~-~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~  516 (569)
                      .|.|.|+.+.+++...    .....||||.|.+.+   .....+|+ +..++-||.|+|+|+|.+..|.-+-|.+.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            7999999999766432    234579999999854   23467888 446788999999999999999889999999999


Q ss_pred             CCCCC-ceeEEEEEecceeeecceEeEEEEcCCC--CCeEEEEEEEEee
Q 008334          517 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT--KSGKLKLHLKWMP  562 (569)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~--~~G~i~l~~~~~p  562 (569)
                      +..++ ||+|+.++|++++..+-++-.-+..+|.  .+-.|.+.+.|.+
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRhVpL~~~~G~~~~~asLfv~i~~~~  745 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRHVPLLSREGEALSSASLFVRIAIVE  745 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceeeeeecCCCCccccceeEEEEEEEec
Confidence            99984 8999999999999766443333333333  3667888888764

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.77  E-value=3.1e-08  Score=100.64  Aligned_cols=124  Identities=25%  Similarity=0.440  Sum_probs=102.4

Q ss_pred             EEEEEEEEEeeccccCCCC-CCCCcEEEEEEecCCCCeEEeeecCCCCCCeec-cEEEEEEecC--CCcEEEEEEEECCC
Q 008334          258 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN-EHFEFIVEDE--STQHLVVRIYDDEG  333 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wn-e~f~f~v~~~--~~~~L~i~v~d~~~  333 (569)
                      |.|.|+|..|++|+-+|.. ...|.||++.+.   ...+||.+..+++||.|| +.|.|.+.+.  ....|.+.+.|+|.
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~---n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt   79 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFA---NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT   79 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEec---ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence            7889999999999998864 457999999998   788999999999999999 5688988754  56689999999999


Q ss_pred             CCCCcceEEEEEEccccCC----------CceeEEEEEccccccccCCCcceeEEEEEEEEEecCC
Q 008334          334 IQSSELIGCAQVRLCELEP----------GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM  389 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~~----------~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~  389 (569)
                      .+.+|-||.+.++++.|.-          +.....|+++....     ...+|+|.+-+..--+++
T Consensus        80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-----hgirgeinvivkvdlfnd  140 (1169)
T KOG1031|consen   80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-----HGIRGEINVIVKVDLFND  140 (1169)
T ss_pred             cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-----ccccceeEEEEEEeehhh
Confidence            9999999999999998731          34567899987543     467899988877654444

>PLN02352 phospholipase D epsilon

Probab=98.73  E-value=8.9e-08  Score=103.68  Aligned_cols=118  Identities=19%  Similarity=0.329  Sum_probs=92.5

Q ss_pred             ccceEEEEEEEEeEcCCCC----CC-CCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEE
Q 008334          441 IIRGVLSVTVILAENLPAS----DL-MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD  515 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~----~~-~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d  515 (569)
                      .--|.|.++|.+|+.+...    .. ....+|||.|.+++ ....||   .+..||.|+|+|.+.|.......+.|.|+|
T Consensus         7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~   82 (758)
T PLN02352          7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN-KKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT   82 (758)
T ss_pred             ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCC-cEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence            3469999999999844322    11 11239999999975 567788   556699999999999998765679999998


Q ss_pred             CCCCCCceeEEEEEecceeeecce-EeEEEEcCCC-----CCeEEEEEEEEeecCCC
Q 008334          516 HDTFGKDYMGRCILTLTRVILEGE-YTDCFELDGT-----KSGKLKLHLKWMPQPIY  566 (569)
Q Consensus       516 ~~~~~~d~lG~~~i~l~~l~~~~~-~~~w~~L~~~-----~~G~i~l~~~~~p~~~~  566 (569)
                          +..+||.+.||..++..++. .+.||++-+.     ...+|+++++|.|...-
T Consensus        83 ----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  135 (758)
T PLN02352         83 ----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE  135 (758)
T ss_pred             ----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence                35799999999999988866 8999998542     22599999999998554

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.69  E-value=5e-08  Score=102.85  Aligned_cols=116  Identities=24%  Similarity=0.379  Sum_probs=89.7

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC----CCeeEeecccCCCCCCeec-eEEEEEeccCCCCEEEEEEEECCC
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKK----SETRNKTRVVNDCLNPIWN-QTFDFVVEDGLHDMLIAEVWDHDT  518 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~----~~~~~~T~~~~~t~nP~w~-e~f~f~v~~~~~~~l~i~V~d~~~  518 (569)
                      -.|.|.|+.|++|+... .|-..|||.|.+-+    .+..++|.+..+++||+|| |.|+|.|.+|.-+.|.+.|+|.|.
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            46899999999999543 45567999999854    2234556666889999999 999999999999999999999999


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEEcCCCCC-----eEEEEEEEEeec
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFELDGTKS-----GKLKLHLKWMPQ  563 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~-----G~i~l~~~~~p~  563 (569)
                      +++ .|||+++.|+..+..+   -+..+|++.-+     ..+.+.++..|+
T Consensus      1144 fs~~~FiaqA~yPv~~ik~G---fRsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSG---FRSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred             cCCcceeeeeecchhhhhcc---ceeeecccCchhhhhhhhheeeeEeccc
Confidence            987 6999999999988544   44567766543     334445554443

>PLN02352 phospholipase D epsilon

Probab=98.68  E-value=1.6e-07  Score=101.82  Aligned_cols=122  Identities=14%  Similarity=0.301  Sum_probs=93.0

Q ss_pred             ccEEEEEEEEEeeccccC----CCC-CCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEE
Q 008334          256 PVGTLEVKLVQAKGLTNK----DLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD  330 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d  330 (569)
                      -.|.|.++|.+|+-+...    +.. ...|||+.+.++  +.+..||   .+..||+|+|+|.+.+.......+.|.|.|
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG--NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeC--CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence            359999999999844321    111 123999999997  4667787   556699999999999987764579999988


Q ss_pred             CCCCCCCcceEEEEEEccccCCCce-eEEEEEccccccccCCCcceeEEEEEEEEEecCCC
Q 008334          331 DEGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME  390 (569)
Q Consensus       331 ~~~~~~d~~iG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~  390 (569)
                           ...+||.+.+|..++..+.. .+.|+++......  .... ..|+++++|.|....
T Consensus        83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~--p~~~-~~~~~~~~~~~~~~~  135 (758)
T PLN02352         83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGK--PNPE-LKLRFMLWFRPAELE  135 (758)
T ss_pred             -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCC--CCCC-CEEEEEEEEEEhhhC
Confidence                 25799999999999988865 8999999754321  1112 589999999997654

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.66  E-value=2.8e-08  Score=108.53  Aligned_cols=108  Identities=23%  Similarity=0.291  Sum_probs=89.7

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEE---eccCCCCEEEEEEEE
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFV---VEDGLHDMLIAEVWD  515 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~---v~~~~~~~l~i~V~d  515 (569)
                      ..|.|.|.|+-|++|+....+..+||||+.|+..   +..+.||+++++|.||.|||...+.   ........|+++||.
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            4589999999999997665567799999999953   3457899999999999999988765   222345689999999


Q ss_pred             CCCCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334          516 HDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       516 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      .+.... -++|.+.|+|.++...++...||+|...
T Consensus      1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred             ccceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence            888765 5999999999999888888899999764

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.65  E-value=9.2e-09  Score=107.10  Aligned_cols=95  Identities=32%  Similarity=0.487  Sum_probs=81.5

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC----CCeEEeeecCCCCCCeeccEEEEEEecC----CCcEEEEEE
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRI  328 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~L~i~v  328 (569)
                      ...|.|.|+.|+++.+-|.+|.+||||++.+.|..    -...+|+++.+|+||+|+|+|+|.|...    ....+.|.|
T Consensus       946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen  946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred             ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence            34566777899999999999999999999998522    2357899999999999999999999744    245789999


Q ss_pred             EECCCCCCCcceEEEEEEccccC
Q 008334          329 YDDEGIQSSELIGCAQVRLCELE  351 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~  351 (569)
                      +|+|-.+.+||-|++.+.|+++.
T Consensus      1026 MDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1026 MDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             eccceecccccchHHHHhhCCCC
Confidence            99999999999999999998874

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.64  E-value=1.5e-07  Score=99.40  Aligned_cols=124  Identities=20%  Similarity=0.271  Sum_probs=92.4

Q ss_pred             EEEEEEEEEeeccccCCCCCCCCcEEEEEEec---CCCCeEEeeecCCCCCCeec-cEEEEEEecCCCcEEEEEEEECCC
Q 008334          258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP---LPEKTKKSKTINNDLNPIWN-EHFEFIVEDESTQHLVVRIYDDEG  333 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~kT~~~~~t~nP~wn-e~f~f~v~~~~~~~L~i~v~d~~~  333 (569)
                      -.|.|.|+.|+.|+... .|...|||++.+-.   +.+..++|.++.+++||+|| |.|.|.+.++.-..|+|.|+|.|.
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            57889999999999443 35567999999852   22344556667899999999 999999999988899999999999


Q ss_pred             CCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEecC
Q 008334          334 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG  388 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~  388 (569)
                      ++...|||++..|+..+..|-   .-.+|....   ...-.-..+.+.+...|..
T Consensus      1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~y---SEdlELaSLLv~i~m~~~~ 1192 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNGY---SEDLELASLLVFIEMRPVL 1192 (1267)
T ss_pred             cCCcceeeeeecchhhhhccc---eeeecccCc---hhhhhhhhheeeeEecccc
Confidence            998899999999999987664   223443211   1112334566666666543

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.46  E-value=4e-07  Score=92.81  Aligned_cols=113  Identities=30%  Similarity=0.479  Sum_probs=92.8

Q ss_pred             eEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEeCCCeeEeecccCCCCCCeec-eEEEEEecc--CCCCEEEEEEEECCCC
Q 008334          444 GVLSVTVILAENLPASDLM-GKADPYVVLTMKKSETRNKTRVVNDCLNPIWN-QTFDFVVED--GLHDMLIAEVWDHDTF  519 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~-g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~-e~f~f~v~~--~~~~~l~i~V~d~~~~  519 (569)
                      |.|-|.|..|++||.+|.. ...|.||+++++.  ..++|.+..+++||.|| +=|.|.+.+  ..+..|+|.+.|+|..
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n--~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty   80 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN--TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY   80 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecc--cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence            7889999999999998853 4579999999975  78999999999999999 668888874  3667899999999998


Q ss_pred             CC-ceeEEEEEecceeeecc----------eEeEEEEcCCC---CCeEEEEEE
Q 008334          520 GK-DYMGRCILTLTRVILEG----------EYTDCFELDGT---KSGKLKLHL  558 (569)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~----------~~~~w~~L~~~---~~G~i~l~~  558 (569)
                      +. |.||.+.|+++.+..+.          -...||++.+.   -.|+|.+-+
T Consensus        81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinviv  133 (1169)
T KOG1031|consen   81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIV  133 (1169)
T ss_pred             ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEE
Confidence            76 89999999998765432          23789998654   367887644

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.39  E-value=3.3e-07  Score=76.25  Aligned_cols=101  Identities=22%  Similarity=0.376  Sum_probs=76.9

Q ss_pred             EEEEEEEeEcCCCCC-------------CCCCCCcEEEEEEe--CCCeeEeecccCCCCCCeeceEEEEEec--------
Q 008334          446 LSVTVILAENLPASD-------------LMGKADPYVVLTMK--KSETRNKTRVVNDCLNPIWNQTFDFVVE--------  502 (569)
Q Consensus       446 L~v~v~~a~~L~~~~-------------~~g~~dpyv~v~l~--~~~~~~~T~~~~~t~nP~w~e~f~f~v~--------  502 (569)
                      |.|.|++|.+|....             ..-..|+||++.+.  .+++..+|+++.++-.|.|+.+++|+|.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            467788888886431             01125899999963  3457889999999999999999999986        


Q ss_pred             c-------CCCCEEEEEEEECCCCC----------Cc-eeEEEEEecceeeecc-eEeEEEEc
Q 008334          503 D-------GLHDMLIAEVWDHDTFG----------KD-YMGRCILTLTRVILEG-EYTDCFEL  546 (569)
Q Consensus       503 ~-------~~~~~l~i~V~d~~~~~----------~d-~lG~~~i~l~~l~~~~-~~~~w~~L  546 (569)
                      .       .....+.++||++...+          +| .||.+.||+.+++... ....||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1       13458999999976431          24 7999999999998764 56999975

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.29  E-value=5.1e-07  Score=99.05  Aligned_cols=107  Identities=26%  Similarity=0.413  Sum_probs=88.3

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCC--eEEeeecCCCCCCeeccEEEEE---EecCCCcEEEEEEEEC
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFI---VEDESTQHLVVRIYDD  331 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~wne~f~f~---v~~~~~~~L~i~v~d~  331 (569)
                      .|+|.|.|.-|++|.--.....+||||+.++.|...+  +.||+++++|.||.|||...+.   ........|.+.||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            5889999999999965444566899999999875543  6789999999999999986654   2223456899999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      +....+.++|.+.++|.++...+....|+.|.
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence            99999999999999999987777677999984

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.11  E-value=1.1e-05  Score=83.80  Aligned_cols=87  Identities=30%  Similarity=0.514  Sum_probs=70.7

Q ss_pred             EEeeccccCCCCCCCCcEEEEEEecCC---CCeEEeeecCCCCCCeeccEEEEEEecC----CCcEEEEEEEECCCCCCC
Q 008334          265 VQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRIYDDEGIQSS  337 (569)
Q Consensus       265 ~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~L~i~v~d~~~~~~d  337 (569)
                      .+|++|.++|..+++|||..++-....   ...++|.+.++++||.|.+ |.+.....    ....+.+++||++..+++
T Consensus       143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~  221 (529)
T KOG1327|consen  143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH  221 (529)
T ss_pred             eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence            568999999999999999998864211   2368999999999999998 55554433    245788999999999999


Q ss_pred             cceEEEEEEccccCC
Q 008334          338 ELIGCAQVRLCELEP  352 (569)
Q Consensus       338 ~~iG~~~i~l~~l~~  352 (569)
                      ++||++..++.++..
T Consensus       222 ~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  222 DLIGKFQTTLSELQE  236 (529)
T ss_pred             CceeEecccHHHhcc
Confidence            999999999998864

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=98.01  E-value=2.6e-05  Score=81.43  Aligned_cols=227  Identities=15%  Similarity=0.256  Sum_probs=157.0

Q ss_pred             CCCCceecCCC-------CchhHHHHHHHHHhH------HHHHHHHHHHHHhHHHHHhhcCCC-ccceEEEEEEecCCCC
Q 008334           54 FYPSWVVFSHR-------QKLTWLNHHLEKLWP------YVNEAASELIKSSVEPVLEQYRPF-ILSSLKFSKFTLGTVA  119 (569)
Q Consensus        54 ~~p~w~~~~~~-------E~~~WlN~~l~~~W~------~~~~~~~~~~~~~~~~~l~~~~p~-~i~~i~~~~~~lG~~~  119 (569)
                      ..|.|...-..       -.|-.+|.+++.++.      ..+.++.+.+...++..+....-+ .++.+.+.++-||.+.
T Consensus        81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f  160 (1051)
T KOG3532|consen   81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF  160 (1051)
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence            46667654221       134555666666665      444556667777777777665443 8999999999999999


Q ss_pred             CeEEEEEEEEcC-------------------------CCeEEEEEEEEEecCceEEEEEEeeeceeeeEEEEEEEEEEEE
Q 008334          120 PQFTGVSIIEDG-------------------------GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF  174 (569)
Q Consensus       120 P~i~~i~~~~~~-------------------------~~~~~le~~~~~~~~~~i~l~~~~~~g~~~~v~v~~~~~~g~~  174 (569)
                      |.+++.+++.-+                         -..+.+-++++|.|+.--++++....+..-.+.|+..+++|.+
T Consensus       161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~  240 (1051)
T KOG3532|consen  161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV  240 (1051)
T ss_pred             ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence            999999998511                         0223456889999987666666666666667889999999999


Q ss_pred             EEEeecCCCCCCcceEEEEEecccceeeEEEEE--ccccccCCcchhHHHHHHHHHHHhhhccccceEee--eCCCC---
Q 008334          175 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKV--VGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIV--PILPG---  247 (569)
Q Consensus       175 rv~l~pl~~~~P~~~~~~~~f~~~p~ldf~l~~--~g~~i~~iP~l~~~~~~~i~~~l~~~~~~P~~~~~--~l~~~---  247 (569)
                      |+.+.    ..|+- .++++|...|.+...++.  .|..+.+  .|...+...++.++....+||++..-  |..+.   
T Consensus       241 r~~~~----r~py~-hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~  313 (1051)
T KOG3532|consen  241 RVILS----RQPYH-HWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF  313 (1051)
T ss_pred             eEEEE----eccce-eeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence            99886    56664 489999999976665543  2222211  13346778888888899999997532  44331   


Q ss_pred             -----CccccccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEec
Q 008334          248 -----DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP  289 (569)
Q Consensus       248 -----~~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~  289 (569)
                           ..+.......|.+.|+++++..|...  .++..-||.+.+.+
T Consensus       314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~  358 (1051)
T KOG3532|consen  314 QASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES  358 (1051)
T ss_pred             ccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence                 11122335789999999999888644  46778899998864

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=9.9e-06  Score=78.07  Aligned_cols=104  Identities=24%  Similarity=0.345  Sum_probs=80.8

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCC--eEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEE
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  330 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d  330 (569)
                      ....-+.|++++|..|...|.+|.+||||..++.+.-+.  +++|.+.+++.||+||+.|.|.+...  ....+.+.|||
T Consensus       230 s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd  309 (362)
T KOG1013|consen  230 STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGD  309 (362)
T ss_pred             cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecc
Confidence            345678899999999999999999999999999854433  57788889999999999999988643  46689999999


Q ss_pred             CCCCCCCcceEEEEEEccccCCCceeEEEE
Q 008334          331 DEGIQSSELIGCAQVRLCELEPGKVKDVWL  360 (569)
Q Consensus       331 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~  360 (569)
                      ++..+..+.+|-+...+  ...+..++.|.
T Consensus       310 ~~~G~s~d~~GG~~~g~--~rr~~v~~h~g  337 (362)
T KOG1013|consen  310 YDIGKSNDSIGGSMLGG--YRRGEVHKHWG  337 (362)
T ss_pred             cCCCcCccCCCcccccc--cccchhhcCcc
Confidence            99887788888754433  23334444443

>PLN02964 phosphatidylserine decarboxylase

Probab=97.85  E-value=2.6e-05  Score=84.40  Aligned_cols=88  Identities=17%  Similarity=0.356  Sum_probs=73.7

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEE-EEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVL-FVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  333 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v-~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~  333 (569)
                      .-.|+..+++++|+    ++   ..|+|..+ +++   .+++||.+.++|.||+||+...|.+........++.|||.+.
T Consensus        51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g---~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (644)
T PLN02964         51 DFSGIALLTLVGAE----MK---FKDKWLACVSFG---EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR  120 (644)
T ss_pred             cccCeEEEEeehhh----hc---cCCcEEEEEEec---ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence            35699999999988    33   24887554 454   899999999999999999999999987766677999999999


Q ss_pred             CCCCcceEEEEEEccccCC
Q 008334          334 IQSSELIGCAQVRLCELEP  352 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~~  352 (569)
                      ++.++++|.|+++|.++..
T Consensus       121 ~s~n~lv~~~e~~~t~f~~  139 (644)
T PLN02964        121 LSKNTLVGYCELDLFDFVT  139 (644)
T ss_pred             CCHHHhhhheeecHhhccH
Confidence            9999999999998877643

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.83  E-value=2.1e-05  Score=60.85  Aligned_cols=96  Identities=19%  Similarity=0.249  Sum_probs=68.1

Q ss_pred             EEEEEeEcCCCCCCCC-CCCcEEEEEEe-CCCeeEeecccCCCCCCeeceEEEEEec--cCCCCEEEEEEEECCCCCCce
Q 008334          448 VTVILAENLPASDLMG-KADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTFGKDY  523 (569)
Q Consensus       448 v~v~~a~~L~~~~~~g-~~dpyv~v~l~-~~~~~~~T~~~~~t~nP~w~e~f~f~v~--~~~~~~l~i~V~d~~~~~~d~  523 (569)
                      +++.+|++|.-....| .+.-|++--+. .+.-.+||.+.....||+|.|+|.|.+.  +.....|.+.|++ ....+..
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~   81 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRT   81 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccce
Confidence            6788999997543322 34456664442 2235789999999999999999999886  3355689999998 3334579


Q ss_pred             eEEEEEecceeeecceEeEEEE
Q 008334          524 MGRCILTLTRVILEGEYTDCFE  545 (569)
Q Consensus       524 lG~~~i~l~~l~~~~~~~~w~~  545 (569)
                      ||.|.+.++++- +++..+|..
T Consensus        82 iG~~sL~l~s~g-eeE~~HW~e  102 (103)
T cd08684          82 IGECSLSLRTLS-TQETDHWLE  102 (103)
T ss_pred             eeEEEeecccCC-HHHhhhhhc
Confidence            999999999863 334466643

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.78  E-value=0.0036  Score=62.84  Aligned_cols=256  Identities=12%  Similarity=0.128  Sum_probs=147.3

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEec-------CCCcEEEEEEEECC
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-------ESTQHLVVRIYDDE  332 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-------~~~~~L~i~v~d~~  332 (569)
                      +.|+|++|++.+...   ...-.+..+++   ++...|..+..+..|.||......+..       .....|++++|..+
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~n---g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~   75 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFN---GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD   75 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeC---CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence            678999999998652   23456666666   788889989999999999988887642       24568999999988


Q ss_pred             -CCCCCcceEEEEEEcccc---CCC--ceeEEEEEccccccccCCCcceeEEEEEEEEEecCCCCCcCC--------CCC
Q 008334          333 -GIQSSELIGCAQVRLCEL---EPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTN--------PFA  398 (569)
Q Consensus       333 -~~~~d~~iG~~~i~l~~l---~~~--~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~--------~~~  398 (569)
                       ..++.+.+|.+.++|...   ..+  .....|++|.....  +-.+.+-++.+.+........+....        |..
T Consensus        76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~--~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~  153 (340)
T PF12416_consen   76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS--KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPR  153 (340)
T ss_pred             CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc--ccccCCccEEEEEEEeccccccCCccccccccCCCcc
Confidence             556789999999999988   544  46778999975321  22234556777776653222110000        000


Q ss_pred             CCCChhhHHHHhhcCc-ccccCCCCCccccccchhhhccccccccceEEEEEEEEeEcCCCCC----C--CCCCCcEEEE
Q 008334          399 PNFSMTSLEKVLTNGE-KALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASD----L--MGKADPYVVL  471 (569)
Q Consensus       399 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~----~--~g~~dpyv~v  471 (569)
                      +. ........+.... ........+       -.+-.....-...-.|.|++..|++|...-    .  .+...-|...
T Consensus       154 ~~-~~~~~~~~~~~~~l~~~l~~~eg-------~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~Y  225 (340)
T PF12416_consen  154 QG-HVPPPNSLLSPATLIPVLLEDEG-------LLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYY  225 (340)
T ss_pred             cC-CCcccccccCccceeEEEccCCc-------eEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEE
Confidence            00 0000000000000 000000000       000000011134567999999999987541    1  1123334444


Q ss_pred             EEeCCCeeEeecccCCCCCCeec-eEEE-EEeccC---------CCCEEEEEEEECCCCCCceeEEEEEecceeeec
Q 008334          472 TMKKSETRNKTRVVNDCLNPIWN-QTFD-FVVEDG---------LHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE  537 (569)
Q Consensus       472 ~l~~~~~~~~T~~~~~t~nP~w~-e~f~-f~v~~~---------~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~  537 (569)
                      .+-+  ....|...+...+|.|. +.-. +.++..         ....|.|.++..+    ..||.+.+++..+...
T Consensus       226 sllG--n~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g~----~~Lg~~~v~l~~Ll~~  296 (340)
T PF12416_consen  226 SLLG--NDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCGN----QSLGSTSVPLQPLLPK  296 (340)
T ss_pred             EecC--cEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeCC----cEEEEEEEEhhhccCC
Confidence            4544  23455566677788774 3333 665421         2346777777643    4799999999998654

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.75  E-value=2.5e-05  Score=60.37  Aligned_cols=97  Identities=21%  Similarity=0.219  Sum_probs=69.0

Q ss_pred             EEEEEEeeccccCCCCCC-CCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEec--CCCcEEEEEEEECCCCCCC
Q 008334          261 EVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYDDEGIQSS  337 (569)
Q Consensus       261 ~V~v~~a~~L~~~d~~g~-~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~v~d~~~~~~d  337 (569)
                      -++++.|++|.-....|. +.-|++--+.-.+....||++.++..||+|+|+|.|.+..  ...-.|-|.|+.  ...+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            478999999975443332 3346654443233456889999999999999999998753  345578899998  44578


Q ss_pred             cceEEEEEEccccCCCceeEEEE
Q 008334          338 ELIGCAQVRLCELEPGKVKDVWL  360 (569)
Q Consensus       338 ~~iG~~~i~l~~l~~~~~~~~~~  360 (569)
                      +.||.|.+.++++-.. ..++|.
T Consensus        80 e~iG~~sL~l~s~gee-E~~HW~  101 (103)
T cd08684          80 RTIGECSLSLRTLSTQ-ETDHWL  101 (103)
T ss_pred             ceeeEEEeecccCCHH-Hhhhhh
Confidence            9999999999886432 234554

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.46  E-value=0.00023  Score=59.60  Aligned_cols=103  Identities=17%  Similarity=0.379  Sum_probs=73.9

Q ss_pred             EEEEEEEeeccccCC---------CC----CCCCcEEEEEEec-CCCCeEEeeecCCCCCCeeccEEEEEEe--------
Q 008334          260 LEVKLVQAKGLTNKD---------LI----GKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVE--------  317 (569)
Q Consensus       260 L~V~v~~a~~L~~~d---------~~----g~~dpyv~v~~~~-~~~~~~kT~~~~~t~nP~wne~f~f~v~--------  317 (569)
                      |.|.|++|.+|+...         +.    -.-++||++.+.- .+++..+|+++-++-.|.|+-+++|.+.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            457788888887421         10    1147999999653 2356788999999999999999999864        


Q ss_pred             c-------CCCcEEEEEEEECCC----------CCCCcceEEEEEEccccCCC-ceeEEEEEc
Q 008334          318 D-------ESTQHLVVRIYDDEG----------IQSSELIGCAQVRLCELEPG-KVKDVWLKL  362 (569)
Q Consensus       318 ~-------~~~~~L~i~v~d~~~----------~~~d~~iG~~~i~l~~l~~~-~~~~~~~~L  362 (569)
                      +       .+...+.++||+...          ..+|-++|.+.+|+.+|... .....|+++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1       134579999999653          23567899999999998543 345677763

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.00022  Score=70.17  Aligned_cols=108  Identities=22%  Similarity=0.372  Sum_probs=84.5

Q ss_pred             ccceEEEEEEEEeEcCCCCCC-CCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEE-
Q 008334          441 IIRGVLSVTVILAENLPASDL-MGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD-  515 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~~-~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d-  515 (569)
                      ...|.+.|.+++|++|..+.. ...++|||+||+-.+.   .+.+|+...+|++|.|.+...|.-. +....|.+.||- 
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD  344 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence            457899999999999987543 2268999999985422   3678888899999999888887755 567889999995 


Q ss_pred             CCCCCC-ceeEEEEEecceeeecc-eEeEEEEcCCC
Q 008334          516 HDTFGK-DYMGRCILTLTRVILEG-EYTDCFELDGT  549 (569)
Q Consensus       516 ~~~~~~-d~lG~~~i~l~~l~~~~-~~~~w~~L~~~  549 (569)
                      +..... .|+|.++|-+.++-... ....||+|-+.
T Consensus       345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs  380 (405)
T KOG2060|consen  345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS  380 (405)
T ss_pred             ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence            444433 59999999999986665 55899999764

>PLN02964 phosphatidylserine decarboxylase

Probab=97.20  E-value=0.00057  Score=74.19  Aligned_cols=89  Identities=19%  Similarity=0.328  Sum_probs=71.5

Q ss_pred             ccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCC
Q 008334          441 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  520 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~  520 (569)
                      .-.|+..+++.+|+    ++   ..|+|..+-.-+ .+++||...++|.||+||+...|.+........++.|||.+.++
T Consensus        51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g-~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  122 (644)
T PLN02964         51 DFSGIALLTLVGAE----MK---FKDKWLACVSFG-EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS  122 (644)
T ss_pred             cccCeEEEEeehhh----hc---cCCcEEEEEEec-ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence            34689999999987    22   258876644332 48999999999999999999999997555556799999999987


Q ss_pred             C-ceeEEEEEecceeeec
Q 008334          521 K-DYMGRCILTLTRVILE  537 (569)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~  537 (569)
                      . +.+|.+.++|.++...
T Consensus       123 ~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        123 KNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             HHHhhhheeecHhhccHH
Confidence            6 6999999999887654

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.00029  Score=69.34  Aligned_cols=109  Identities=24%  Similarity=0.381  Sum_probs=84.4

Q ss_pred             CccEEEEEEEEEeeccccCCCC-CCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEE-
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD-  330 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d-  330 (569)
                      ...|.|.|.|++|++|..+... ..++|||+|++.+.+.  -+.+|+...+|.+|-+-+...|.-. +....|.+.||. 
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD  344 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence            5679999999999999876432 3589999999975332  2567888888988888776666644 456689999995 


Q ss_pred             CCCCCCCcceEEEEEEccccCCCc-eeEEEEEccc
Q 008334          331 DEGIQSSELIGCAQVRLCELEPGK-VKDVWLKLVK  364 (569)
Q Consensus       331 ~~~~~~d~~iG~~~i~l~~l~~~~-~~~~~~~L~~  364 (569)
                      +.+...+.|+|.+.+-+++|.-.. ..-.|++|..
T Consensus       345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg  379 (405)
T KOG2060|consen  345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG  379 (405)
T ss_pred             ccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence            556667889999999999986554 6778999864

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.15  E-value=0.00041  Score=68.94  Aligned_cols=120  Identities=18%  Similarity=0.244  Sum_probs=92.0

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEe---CCCeeEeecccCCCCCCeeceEEEEEeccC-----------CCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVEDG-----------LHD  507 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~---~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-----------~~~  507 (569)
                      ....|.+.|.++.+++........|.|+++.+.   ....+.+|.+++.|.+|.|+|.|.+.+...           .+.
T Consensus       365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~  444 (523)
T KOG3837|consen  365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL  444 (523)
T ss_pred             chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence            345677888888888865433345788888763   233577899999999999999999998742           122


Q ss_pred             EEEEEEEECCCCCC--ceeEEEEEecceeeecceEeEEEEcCCC---CCeEEEEEEEEe
Q 008334          508 MLIAEVWDHDTFGK--DYMGRCILTLTRVILEGEYTDCFELDGT---KSGKLKLHLKWM  561 (569)
Q Consensus       508 ~l~i~V~d~~~~~~--d~lG~~~i~l~~l~~~~~~~~w~~L~~~---~~G~i~l~~~~~  561 (569)
                      -+.|+++.+..+-+  .++|.+.+.|..+...-++...++|.+.   -.|.+.+++..+
T Consensus       445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence            58999999988743  5999999999988777777888998643   378998888764

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.01  E-value=0.00048  Score=68.43  Aligned_cols=124  Identities=17%  Similarity=0.181  Sum_probs=90.1

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEe--cCCCCeEEeeecCCCCCCeeccEEEEEEecC-----------CCcE
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-----------STQH  323 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-----------~~~~  323 (569)
                      ...|.+.|+++.+++........|-|+.+.+-  .+..++.+|.++++|.+|.|+|.|.+.+...           ....
T Consensus       366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g  445 (523)
T KOG3837|consen  366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG  445 (523)
T ss_pred             hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence            34566777788777644322234678888764  2345678899999999999999999998652           1236


Q ss_pred             EEEEEEECCCC-CCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          324 LVVRIYDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       324 L~i~v~d~~~~-~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                      +.|++|++..+ .+|.++|.+.+.+..|...-.....++|..     ......|.|.+.+..-
T Consensus       446 ~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D-----GRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD-----GRKAVGGKLEVKVRIR  503 (523)
T ss_pred             eeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc-----cccccCCeeEEEEEEe
Confidence            89999998764 568999999999998877666666777742     2345678888887764

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.76  E-value=0.02  Score=50.52  Aligned_cols=124  Identities=21%  Similarity=0.247  Sum_probs=91.2

Q ss_pred             ccceEEEEEEEEeEcCCCCC--CCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCC-------------
Q 008334          441 IIRGVLSVTVILAENLPASD--LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL-------------  505 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~--~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~-------------  505 (569)
                      .....|++.|..++-+...-  ..+..+.-..+++.-.+++++|+.+..+.+|.|+|.|-|.+....             
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            34578999999988664321  115556666666654458999999999999999999999997432             


Q ss_pred             CCEEEEEEEECCCCCC-ceeEEEEEecceeeecceE--eEEEEcCCC------CCeEEEEEEEEeecC
Q 008334          506 HDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEY--TDCFELDGT------KSGKLKLHLKWMPQP  564 (569)
Q Consensus       506 ~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~--~~w~~L~~~------~~G~i~l~~~~~p~~  564 (569)
                      .+.+++.|.-.+..+. .++|.-.+....++..+..  .-...|.|.      ..|-+.++++..|..
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~  153 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL  153 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence            2468888887777655 6999999999888776654  344455442      479999999988864

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.60  E-value=0.037  Score=48.83  Aligned_cols=131  Identities=14%  Similarity=0.120  Sum_probs=87.8

Q ss_pred             ccEEEEEEEEEeeccccCCCC--CCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCC-------------
Q 008334          256 PVGTLEVKLVQAKGLTNKDLI--GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-------------  320 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~d~~--g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-------------  320 (569)
                      ..-.|.++|..++-....-..  +..+.-..+++. .++|.++|+.+..+.+|.++|.|-|.+....             
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            446688888887765432111  344444444443 3479999999999999999999999986432             


Q ss_pred             CcEEEEEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEec
Q 008334          321 TQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  387 (569)
Q Consensus       321 ~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~  387 (569)
                      .+.+.+.|..-|..+...++|+..++...+........++.+.-.-.....+.+.|-+.++++.+|.
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~  152 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN  152 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence            3467888887777766789999999998876554432233322111111223578999999999873

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=96.55  E-value=0.1  Score=45.90  Aligned_cols=122  Identities=20%  Similarity=0.209  Sum_probs=82.9

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCe-eEeeccc-CCCCCCeeceEEEEEecc---C-----CCCEEEEE
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET-RNKTRVV-NDCLNPIWNQTFDFVVED---G-----LHDMLIAE  512 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~-~~~T~~~-~~t~nP~w~e~f~f~v~~---~-----~~~~l~i~  512 (569)
                      .-.+.+.+++..+++..    ...-|++...+.... ..+|... .....-.||+.|.+.+.-   .     ....+.|.
T Consensus         6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~   81 (143)
T PF10358_consen    6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS   81 (143)
T ss_pred             eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence            46788999999999872    223444454443211 2344333 345568999999998751   1     23468899


Q ss_pred             EEECCCCCC-ceeEEEEEecceeeec--ceEeEEEEcCCC--CCeEEEEEEEEeecCCCCC
Q 008334          513 VWDHDTFGK-DYMGRCILTLTRVILE--GEYTDCFELDGT--KSGKLKLHLKWMPQPIYRD  568 (569)
Q Consensus       513 V~d~~~~~~-d~lG~~~i~l~~l~~~--~~~~~w~~L~~~--~~G~i~l~~~~~p~~~~~~  568 (569)
                      |+.....++ ..+|.+.|+|.+....  ......++|.+.  ....+++++.+.+....++
T Consensus        82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~~~  142 (143)
T PF10358_consen   82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELREDPD  142 (143)
T ss_pred             EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccCCC
Confidence            988754445 4999999999998875  456788888765  4678888998888755443

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.69  E-value=0.084  Score=48.15  Aligned_cols=89  Identities=17%  Similarity=0.160  Sum_probs=62.5

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCe----eEeecccCCCCCCeeceEEEEEec---cCCCCEEEEEEEEC
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDH  516 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~----~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~l~i~V~d~  516 (569)
                      ..++|+++.+.++...  ....+-|+++.+-++.+    ...|+.+....++.|||.++|++.   -|..+.|.|.||+.
T Consensus         8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            4689999999999862  23456788776543222    235555554577999999999875   24667999999986


Q ss_pred             CCCC----------------C-ceeEEEEEeccee
Q 008334          517 DTFG----------------K-DYMGRCILTLTRV  534 (569)
Q Consensus       517 ~~~~----------------~-d~lG~~~i~l~~l  534 (569)
                      ....                + ..||.+.++|-+-
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            4321                1 3899999998763

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.45  E-value=0.12  Score=46.27  Aligned_cols=87  Identities=17%  Similarity=0.195  Sum_probs=61.5

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCe----eEeecccCCCCCCeeceEEEEEec---cCCCCEEEEEEEEC
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDH  516 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~----~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~l~i~V~d~  516 (569)
                      ..++|+|+++++++..+   .++-||.+.+-++.+    ...|..+. ..++.|||-.+|++.   -+..+.|.|+||+.
T Consensus         8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            46889999999998643   457888887644332    12344333 367999999999875   24667999999996


Q ss_pred             CCCC----C-ceeEEEEEeccee
Q 008334          517 DTFG----K-DYMGRCILTLTRV  534 (569)
Q Consensus       517 ~~~~----~-d~lG~~~i~l~~l  534 (569)
                      ....    + ..+|.++++|-+-
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECC
Confidence            5421    2 3699999999873

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.30  E-value=1.2  Score=38.97  Aligned_cols=121  Identities=13%  Similarity=0.206  Sum_probs=74.8

Q ss_pred             EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeec-CCCCCCeeccEEEEEEec--------CCCcEEEEEE
Q 008334          258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI-NNDLNPIWNEHFEFIVED--------ESTQHLVVRI  328 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~-~~t~nP~wne~f~f~v~~--------~~~~~L~i~v  328 (569)
                      =.+.+++++..+++.    ....-|+....+.......+|... ..+..-.|||.|.+.+.-        .....+.|.|
T Consensus         7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v   82 (143)
T PF10358_consen    7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV   82 (143)
T ss_pred             EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence            456788889888875    112234444333111102344433 334457899999887641        1234688999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCC--ceeEEEEEccccccccCCCcceeEEEEEEEEEecC
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG  388 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~--~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~  388 (569)
                      +.....++...+|.+.++|.+....  .....-++|.+      .......+++++.+.+..
T Consensus        83 ~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~------~~~~~a~L~isi~~~~~~  138 (143)
T PF10358_consen   83 FEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK------CKKSNATLSISISLSELR  138 (143)
T ss_pred             EEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc------CCCCCcEEEEEEEEEECc
Confidence            9875433336899999999999764  34455556532      235567888888887643

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.29  E-value=0.24  Score=49.96  Aligned_cols=112  Identities=14%  Similarity=0.213  Sum_probs=83.5

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEecc-------CCCCEEEEEEEECCC
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-------GLHDMLIAEVWDHDT  518 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~-------~~~~~l~i~V~d~~~  518 (569)
                      +.|.|.+|++++...   .....+...+++  ....|..+..+..|.||..+.+.+..       ..+..|++++|..+.
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng--~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~   76 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNG--ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG   76 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCC--ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC
Confidence            578899999998752   345677888876  67788888899999999999998852       245689999998873


Q ss_pred             -CC-CceeEEEEEeccee---eec--ceEeEEEEcCCC------CCeEEEEEEEEee
Q 008334          519 -FG-KDYMGRCILTLTRV---ILE--GEYTDCFELDGT------KSGKLKLHLKWMP  562 (569)
Q Consensus       519 -~~-~d~lG~~~i~l~~l---~~~--~~~~~w~~L~~~------~~G~i~l~~~~~p  562 (569)
                       .+ ++.+|.+.++|...   ..+  .....||+|-+.      ..-+|.+.+....
T Consensus        77 ~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~  133 (340)
T PF12416_consen   77 STGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIED  133 (340)
T ss_pred             CCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEec
Confidence             33 47999999999987   333  244799999765      2345666655443

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.11  E-value=0.054  Score=59.25  Aligned_cols=91  Identities=24%  Similarity=0.436  Sum_probs=68.0

Q ss_pred             ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC----CCeEEeeec-CCCCCCeeccE-EEEEE-ecCCCcEEEEEE
Q 008334          256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTI-NNDLNPIWNEH-FEFIV-EDESTQHLVVRI  328 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~-~~t~nP~wne~-f~f~v-~~~~~~~L~i~v  328 (569)
                      ..+.+.|+|+++.-|..++    ...||.|.+-..+    .+.++|+++ .++.||+|+|+ |.|.- --+.-..|+|.|
T Consensus       701 IA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav  776 (1189)
T KOG1265|consen  701 IAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV  776 (1189)
T ss_pred             EEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence            4578899999999998765    3479999985322    235777776 57899999974 66652 223445799999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGK  354 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~  354 (569)
                      |+.+.    .+||+=.+|+..|..|-
T Consensus       777 yeEgg----K~ig~RIlpvd~l~~GY  798 (1189)
T KOG1265|consen  777 YEEGG----KFIGQRILPVDGLNAGY  798 (1189)
T ss_pred             eccCC----ceeeeeccchhcccCcc
Confidence            99753    69999999999998775

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.79  E-value=0.95  Score=40.52  Aligned_cols=89  Identities=18%  Similarity=0.272  Sum_probs=59.9

Q ss_pred             EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEe--cC-CCcEEEEEEEEC
Q 008334          258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD  331 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~--~~-~~~~L~i~v~d~  331 (569)
                      ..++|+|++++++.-.+   .+|-|+.+.+-..+.   ....|+.+. ..++.|||...|.+.  +. ....|.|.+|+.
T Consensus         8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            46789999999987543   358888887642221   122344344 367999999888764  32 355899999997


Q ss_pred             CCCC----CCcceEEEEEEcccc
Q 008334          332 EGIQ----SSELIGCAQVRLCEL  350 (569)
Q Consensus       332 ~~~~----~d~~iG~~~i~l~~l  350 (569)
                      ...+    ....+|.+.++|-+-
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECC
Confidence            6421    224699999998763

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=94.50  E-value=0.4  Score=37.93  Aligned_cols=84  Identities=19%  Similarity=0.245  Sum_probs=58.6

Q ss_pred             CCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCCCceeEE
Q 008334          279 SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDV  358 (569)
Q Consensus       279 ~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~  358 (569)
                      ++-.+.+.++  +..+.+|.-.. -.+..|++.|.+.+.  .+..|+|.||-+|-   ..+-|-.-+.|++...    ..
T Consensus         9 ~eV~avLklD--n~~VgqT~Wk~-~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~---RslCav~~lrLEd~~~----~~   76 (98)
T cd08687           9 SEVSAVLKLD--NTVVGQTQWKP-KSNQAWDQSFTLELE--RSRELEIAVYWRDW---RSLCAVKFLKLEDERH----EV   76 (98)
T ss_pred             cceEEEEEEc--CeEEeeccccc-cccccccceeEEEee--cccEEEEEEEEecc---hhhhhheeeEhhhhcc----cc
Confidence            5778888887  35667776543 357899999999986  45689999998875   3467777788877322    22


Q ss_pred             EEEccccccccCCCcceeEEEEEEEE
Q 008334          359 WLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       359 ~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      -.+          -.+.|.+..+++|
T Consensus        77 ~~~----------lepqg~l~~ev~f   92 (98)
T cd08687          77 QLD----------MEPQLCLVAELTF   92 (98)
T ss_pred             eec----------cccccEEEEEEEe
Confidence            222          3567888877776

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.49  E-value=0.27  Score=44.11  Aligned_cols=90  Identities=17%  Similarity=0.135  Sum_probs=61.5

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCe----eEeecccCCCCCCeeceEEEEEec---cCCCCEEEEEEEEC
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDH  516 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~----~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~l~i~V~d~  516 (569)
                      ..++|.++...+....+ ....+-|+.+.+-.+.+    ...|.....+.++.|||..+|++.   -|.++.|.|+||+.
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            45778888888876521 23456677776643222    234444444468999999999864   24667999999997


Q ss_pred             CCCC--C-ceeEEEEEeccee
Q 008334          517 DTFG--K-DYMGRCILTLTRV  534 (569)
Q Consensus       517 ~~~~--~-d~lG~~~i~l~~l  534 (569)
                      ...+  + ..||.++++|-+-
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEcc
Confidence            7654  2 5899999999874

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.98  E-value=0.44  Score=43.46  Aligned_cols=90  Identities=19%  Similarity=0.245  Sum_probs=57.7

Q ss_pred             EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEe--cC-CCcEEEEEEEEC
Q 008334          258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD  331 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~--~~-~~~~L~i~v~d~  331 (569)
                      ..++|+|+.+.++...  ....+-|+.+.+-..+.   ....|+......++.|||...|.+.  +. ....|.|.||+.
T Consensus         8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            3578999999999852  23456777776542111   1235555554567999999888764  33 355899999997


Q ss_pred             CCCC----------------CCcceEEEEEEccc
Q 008334          332 EGIQ----------------SSELIGCAQVRLCE  349 (569)
Q Consensus       332 ~~~~----------------~d~~iG~~~i~l~~  349 (569)
                      ....                .+..||.+.++|-+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEc
Confidence            5422                13466777666654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.82  E-value=0.29  Score=43.91  Aligned_cols=72  Identities=18%  Similarity=0.199  Sum_probs=51.7

Q ss_pred             CCCCcEEEEEEeCCCe----eEeecccCCCCCCeeceEEEEEec---cCCCCEEEEEEEECCCCCC-ceeEEEEEeccee
Q 008334          463 GKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV  534 (569)
Q Consensus       463 g~~dpyv~v~l~~~~~----~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l  534 (569)
                      ..++-||.+.+-++++    ...|..+.-+..+.|||-.+|++.   -+.++.|.|+||+....++ ..+|.++++|-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            3467788776643222    234555555677899999999985   2466799999999876544 5899999999874

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=93.72  E-value=0.14  Score=56.25  Aligned_cols=90  Identities=27%  Similarity=0.385  Sum_probs=67.9

Q ss_pred             ccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-----CCeeEeecccC-CCCCCeece-EEEEE-eccCCCCEEEEE
Q 008334          441 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK-----SETRNKTRVVN-DCLNPIWNQ-TFDFV-VEDGLHDMLIAE  512 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-----~~~~~~T~~~~-~t~nP~w~e-~f~f~-v~~~~~~~l~i~  512 (569)
                      ...+.+.|+|++|.=|...+    ...||.|.+-+     ..+.++|+++. ++.||+|+| .|.|. |--+.-+.|.|.
T Consensus       700 vIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia  775 (1189)
T KOG1265|consen  700 VIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA  775 (1189)
T ss_pred             eEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence            34678999999999887654    34899999854     12457888775 588999985 57764 233456789999


Q ss_pred             EEECCCCCCceeEEEEEecceeeec
Q 008334          513 VWDHDTFGKDYMGRCILTLTRVILE  537 (569)
Q Consensus       513 V~d~~~~~~d~lG~~~i~l~~l~~~  537 (569)
                      ||+.+.   .+||+=.+|+..+..+
T Consensus       776 vyeEgg---K~ig~RIlpvd~l~~G  797 (1189)
T KOG1265|consen  776 VYEEGG---KFIGQRILPVDGLNAG  797 (1189)
T ss_pred             eeccCC---ceeeeeccchhcccCc
Confidence            999764   7999999999987554

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.52  E-value=0.32  Score=44.32  Aligned_cols=92  Identities=17%  Similarity=0.226  Sum_probs=64.6

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCee----EeecccC----CCCCCeeceEEEEEec---cCCCCEEEE
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETR----NKTRVVN----DCLNPIWNQTFDFVVE---DGLHDMLIA  511 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~----~~T~~~~----~t~nP~w~e~f~f~v~---~~~~~~l~i  511 (569)
                      ...+.|+|..+.+++........+-|+.+.+-++.+.    ..|+...    -...+.|||-.+|.+.   -+.++.|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            4668999999999998764445788888877433331    2333221    1235779999999874   246679999


Q ss_pred             EEEECCCCC---------C-ceeEEEEEeccee
Q 008334          512 EVWDHDTFG---------K-DYMGRCILTLTRV  534 (569)
Q Consensus       512 ~V~d~~~~~---------~-d~lG~~~i~l~~l  534 (569)
                      .+|+....+         + ..||.+.++|-+-
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999866543         2 4899999999874

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.98  E-value=0.63  Score=41.68  Aligned_cols=92  Identities=18%  Similarity=0.214  Sum_probs=59.1

Q ss_pred             EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEe--cC-CCcEEEEEEEEC
Q 008334          258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD  331 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~--~~-~~~~L~i~v~d~  331 (569)
                      ..++|++....++...+ ....+-|+.+.+-..+.   ....|.......++.|||...|.+.  +. ....|.|.+|+.
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            34677788877776411 23356777776642221   2234443333468999999888753  32 355899999998


Q ss_pred             CCCC--CCcceEEEEEEcccc
Q 008334          332 EGIQ--SSELIGCAQVRLCEL  350 (569)
Q Consensus       332 ~~~~--~d~~iG~~~i~l~~l  350 (569)
                      +..+  .+..||.+.++|-+-
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEcc
Confidence            7543  467899999998763

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.92  E-value=0.74  Score=42.00  Aligned_cols=89  Identities=10%  Similarity=0.086  Sum_probs=56.6

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCe---eEeecccCCCCCCeeceEEEEEec---cCCCCEEEEEEEECC
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET---RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHD  517 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~---~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~l~i~V~d~~  517 (569)
                      ..++|+|+.+..+ ..+......-||++.+-++..   ..+|....-+.+|.|||-.+|++.   -+..+.|.|.||+..
T Consensus        10 ~~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          10 RKFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CCEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            4577888888633 332222344566665533222   224555555678999999999875   245679999999852


Q ss_pred             CC---------------C--CceeEEEEEecce
Q 008334          518 TF---------------G--KDYMGRCILTLTR  533 (569)
Q Consensus       518 ~~---------------~--~d~lG~~~i~l~~  533 (569)
                      ..               +  ...||.+.+.|-+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD  121 (178)
T cd08399          89 APALSSKKSAESPSSESKGKHQLLYYVNLLLID  121 (178)
T ss_pred             cCcccccccccccccccccccceEEEEEEEEEc
Confidence            21               1  1378999998876

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=92.88  E-value=1.1  Score=39.33  Aligned_cols=55  Identities=20%  Similarity=0.195  Sum_probs=40.3

Q ss_pred             EeecccCCC-CCCeeceEEEEEec---cCCCCEEEEEEEECCCCCC-----ceeEEEEEeccee
Q 008334          480 NKTRVVNDC-LNPIWNQTFDFVVE---DGLHDMLIAEVWDHDTFGK-----DYMGRCILTLTRV  534 (569)
Q Consensus       480 ~~T~~~~~t-~nP~w~e~f~f~v~---~~~~~~l~i~V~d~~~~~~-----d~lG~~~i~l~~l  534 (569)
                      ..|.....+ .++.|||.++|++.   -|.++.|.|+||+.+....     ..||.+.++|-+-
T Consensus        22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            356655555 79999999999874   3467899999998766544     4899999999875

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=92.68  E-value=1  Score=35.62  Aligned_cols=84  Identities=20%  Similarity=0.202  Sum_probs=57.2

Q ss_pred             CCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCceeEEEEEecceeeecceEeEEE
Q 008334          465 ADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCF  544 (569)
Q Consensus       465 ~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~  544 (569)
                      .+-.+.+.+.+ ..+.+|.-. .-.+..|++.|++.+.  ...+|+|.||-+|-  +.+-|..-+.|++...    .  +
T Consensus         9 ~eV~avLklDn-~~VgqT~Wk-~~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~--RslCav~~lrLEd~~~----~--~   76 (98)
T cd08687           9 SEVSAVLKLDN-TVVGQTQWK-PKSNQAWDQSFTLELE--RSRELEIAVYWRDW--RSLCAVKFLKLEDERH----E--V   76 (98)
T ss_pred             cceEEEEEEcC-eEEeecccc-ccccccccceeEEEee--cccEEEEEEEEecc--hhhhhheeeEhhhhcc----c--c
Confidence            56678888764 345666643 3468899999999988  35789999998875  3566666778877322    2  2


Q ss_pred             EcCCCCCeEEEEEEEE
Q 008334          545 ELDGTKSGKLKLHLKW  560 (569)
Q Consensus       545 ~L~~~~~G~i~l~~~~  560 (569)
                      .+.-.+.|.+..++.|
T Consensus        77 ~~~lepqg~l~~ev~f   92 (98)
T cd08687          77 QLDMEPQLCLVAELTF   92 (98)
T ss_pred             eeccccccEEEEEEEe
Confidence            2333346777777776

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=92.20  E-value=0.33  Score=47.09  Aligned_cols=118  Identities=18%  Similarity=0.153  Sum_probs=71.7

Q ss_pred             CccEEEEEEEEEeeccccCCC--CCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE  332 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~  332 (569)
                      ...|+|.++++++++|.-...  .-.-+-||++...  .....+|.+.....--.|.|+|..++.+  ...+.+-||.++
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d--rqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~  123 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD--RQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWP  123 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeec--ccCccccccccCCCCccchhhceeeccc--ceeeeEEEeecC
Confidence            457999999999999985332  2345889999876  2223445544444455799999988864  346888999988


Q ss_pred             CCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          333 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       333 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                      .-.++++.-...+.+..+... ..+..+.|        .-.++|++.+.+.+.
T Consensus       124 pq~RHKLC~~g~l~~~~v~rq-spd~~~Al--------~lePrgq~~~r~~~~  167 (442)
T KOG1452|consen  124 PQRRHKLCHLGLLEAFVVDRQ-SPDRVVAL--------YLEPRGQPPLRLPLA  167 (442)
T ss_pred             chhhccccccchhhhhhhhhc-CCcceeee--------ecccCCCCceecccC
Confidence            765665543333333322211 11222222        225677777776653

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=92.04  E-value=2.1  Score=39.41  Aligned_cols=56  Identities=20%  Similarity=0.298  Sum_probs=40.9

Q ss_pred             CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEECCCCCC--CcceEEEEEEcc
Q 008334          293 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQS--SELIGCAQVRLC  348 (569)
Q Consensus       293 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~~~~~~--d~~iG~~~i~l~  348 (569)
                      ..++|.+...+.+|.|+|++.+.+...  ....|.|++++.....+  ...+|.+-++|-
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            357888888899999999999888643  45689998888543221  245777777763

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.48  E-value=0.67  Score=41.58  Aligned_cols=74  Identities=18%  Similarity=0.202  Sum_probs=51.4

Q ss_pred             CCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEe--cC-CCcEEEEEEEECCCCCCCcceEEEEEEcccc
Q 008334          277 GKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDEGIQSSELIGCAQVRLCEL  350 (569)
Q Consensus       277 g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~--~~-~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l  350 (569)
                      ..+|-||.+.+-..+.   ....|+.+.-+..+.|||...|.+.  +. ....|.|.||+.+..++...+|.+.++|-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            4467888887642221   1234555555667899999888764  32 3558999999988665677899999998653

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=91.23  E-value=3  Score=38.47  Aligned_cols=56  Identities=20%  Similarity=0.221  Sum_probs=41.2

Q ss_pred             CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEECCCC-CC---CcceEEEEEEcc
Q 008334          293 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI-QS---SELIGCAQVRLC  348 (569)
Q Consensus       293 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~~~~-~~---d~~iG~~~i~l~  348 (569)
                      ..++|.+...+.+|.|+|++.+.+...  .+..|.|++++.... .+   ...+|.+-++|-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            357888888899999999999888643  566899999886532 11   246787777774

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=90.90  E-value=0.84  Score=41.56  Aligned_cols=92  Identities=16%  Similarity=0.216  Sum_probs=60.5

Q ss_pred             EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecC----CCCCCeeccEEEEEEe--cC-CCcEEEEE
Q 008334          258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTIN----NDLNPIWNEHFEFIVE--DE-STQHLVVR  327 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~----~t~nP~wne~f~f~v~--~~-~~~~L~i~  327 (569)
                      ..+.|+|.++.+++........|-|+.+.+-..+.   ....|+...    -...+.|||...|.+.  +. ....|.|.
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it   87 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT   87 (171)
T ss_pred             ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence            45789999999998765444578888887753221   122333211    1235679998888764  22 35589999


Q ss_pred             EEECCCCC---------CCcceEEEEEEccc
Q 008334          328 IYDDEGIQ---------SSELIGCAQVRLCE  349 (569)
Q Consensus       328 v~d~~~~~---------~d~~iG~~~i~l~~  349 (569)
                      +|+....+         .+..||.+.++|-+
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             EEEEecCCccccccccccceEEEEEeEeeEc
Confidence            99976543         35688888888765

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=88.90  E-value=3  Score=34.12  Aligned_cols=73  Identities=16%  Similarity=0.209  Sum_probs=48.3

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCe----eEeecccCCCCCCeeceEEEEEec---cCCCCEEEEEEEECCC
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHDT  518 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~----~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~l~i~V~d~~~  518 (569)
                      +.+.+...++.+.......++-||.+.+-++++    ...|..+.-...+.|||-.+|++.   -|..+.|.|.+|+...
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence            556677777776544333357888887643332    224554444566999999999875   3466799999998643

Outlier of C2 family.

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=88.66  E-value=0.84  Score=44.40  Aligned_cols=114  Identities=18%  Similarity=0.143  Sum_probs=71.1

Q ss_pred             ccceEEEEEEEEeEcCCCCCC--CCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCC
Q 008334          441 IIRGVLSVTVILAENLPASDL--MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT  518 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~~--~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~  518 (569)
                      ..+|+|.+++.++++|.....  .-..+-||.+.... ..+.+|.+......-.|.|.|+..+-+  ...+.+-||.++.
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr-qh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~p  124 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR-QHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPP  124 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecc-cCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCc
Confidence            467999999999999975432  33468899998763 234455555555556778999887764  4568888888776


Q ss_pred             CCC---ceeEEEEEecceeeecceEeEEEEcCCCCCeEEEEEEEE
Q 008334          519 FGK---DYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW  560 (569)
Q Consensus       519 ~~~---d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~  560 (569)
                      ..+   ...|  .+.+..+.. ...++-+-|.-.+.|.+.+.+-+
T Consensus       125 q~RHKLC~~g--~l~~~~v~r-qspd~~~Al~lePrgq~~~r~~~  166 (442)
T KOG1452|consen  125 QRRHKLCHLG--LLEAFVVDR-QSPDRVVALYLEPRGQPPLRLPL  166 (442)
T ss_pred             hhhccccccc--hhhhhhhhh-cCCcceeeeecccCCCCceeccc
Confidence            432   3466  233333322 12234445544456666666544

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=88.62  E-value=7.1  Score=35.39  Aligned_cols=96  Identities=13%  Similarity=0.285  Sum_probs=64.4

Q ss_pred             CcEEEEEEeCCCeeEeecccCC--CCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCceeEEEEEecceeeec--ce--
Q 008334          466 DPYVVLTMKKSETRNKTRVVND--CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE--GE--  539 (569)
Q Consensus       466 dpyv~v~l~~~~~~~~T~~~~~--t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~--~~--  539 (569)
                      .-|+++.+++ +.+.+|+...-  ...=.|||.|.+.+.. ....|.++||.....++..|+.+.+++-.....  ..  
T Consensus        38 ~~~ikl~~N~-k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~~~~~~~~  115 (168)
T PF15625_consen   38 RYYIKLFFND-KEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSGLSDRLLAEVFVPVPGSTVHTSTDNV  115 (168)
T ss_pred             eEEEEEEECC-EEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccCccceEEEEEEeeCCCCcccccccCC
Confidence            4588888875 45666765433  2234568999999876 456799999998875567999999997654322  11  


Q ss_pred             EeEEEEcCC------------------------CCCeEEEEEEEEeec
Q 008334          540 YTDCFELDG------------------------TKSGKLKLHLKWMPQ  563 (569)
Q Consensus       540 ~~~w~~L~~------------------------~~~G~i~l~~~~~p~  563 (569)
                      ...|+.+..                        .-+|.|++.+.|...
T Consensus       116 ~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~~  163 (168)
T PF15625_consen  116 PLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAVG  163 (168)
T ss_pred             ceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEeCC
Confidence            234443311                        127999999999764

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=87.96  E-value=2.4  Score=39.14  Aligned_cols=57  Identities=21%  Similarity=0.340  Sum_probs=34.4

Q ss_pred             CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEECCCCCC---CcceEEEEEEccc
Q 008334          293 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQS---SELIGCAQVRLCE  349 (569)
Q Consensus       293 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~~~~~~---d~~iG~~~i~l~~  349 (569)
                      ..+.|.+...+.+|.|+|+|.+.+...  ....|.|.+++.....+   +..+|.+.++|-+
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            356777888889999999999988754  45689999999764321   1688888888865

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=86.65  E-value=4.8  Score=36.78  Aligned_cols=72  Identities=14%  Similarity=0.194  Sum_probs=43.0

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCC---eEEeeecCCCCCCeeccEEEEEEe--cC-CCcEEEEEEEECC
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDE  332 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~~~~~t~nP~wne~f~f~v~--~~-~~~~L~i~v~d~~  332 (569)
                      .++|+|+++.++. .+......-||.+.+-. +++   ..+|+...-+.++.|||...|.+.  +. ....|.|.||+..
T Consensus        11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CEEEEEEeecccC-cCCCCceEEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            4677888876433 22122233556654432 122   124555555678999998888764  32 3558999999974

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=83.87  E-value=10  Score=33.21  Aligned_cols=55  Identities=18%  Similarity=0.374  Sum_probs=39.1

Q ss_pred             EeeecCCC-CCCeeccEEEEEEe--cC-CCcEEEEEEEECCCCCCC----cceEEEEEEcccc
Q 008334          296 KSKTINND-LNPIWNEHFEFIVE--DE-STQHLVVRIYDDEGIQSS----ELIGCAQVRLCEL  350 (569)
Q Consensus       296 kT~~~~~t-~nP~wne~f~f~v~--~~-~~~~L~i~v~d~~~~~~d----~~iG~~~i~l~~l  350 (569)
                      .|+...-+ .++.|||...|.+.  +. ....|.|.||+.+....+    ..||.+.++|-+-
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            55555444 79999999888864  33 456899999998765544    6899999998664

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=83.15  E-value=19  Score=32.52  Aligned_cols=69  Identities=19%  Similarity=0.307  Sum_probs=51.5

Q ss_pred             CCcEEEEEEecCCCCeEEeeecCC--CCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccC
Q 008334          279 SDPYAVLFVRPLPEKTKKSKTINN--DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE  351 (569)
Q Consensus       279 ~dpyv~v~~~~~~~~~~kT~~~~~--t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~  351 (569)
                      ..-|+++.++  ++++.+|+...-  ...-.+||.|.+.+... -+.|.++||.... ..+..|+.+.+++-...
T Consensus        37 ~~~~ikl~~N--~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   37 TRYYIKLFFN--DKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGST  107 (168)
T ss_pred             eeEEEEEEEC--CEEEEeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence            4468888886  456677766433  33346889999999764 4589999999987 57899999999987553

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=82.51  E-value=14  Score=33.93  Aligned_cols=56  Identities=21%  Similarity=0.272  Sum_probs=42.6

Q ss_pred             eeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCCC---CceeEEEEEecce
Q 008334          478 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG---KDYMGRCILTLTR  533 (569)
Q Consensus       478 ~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~~---~d~lG~~~i~l~~  533 (569)
                      ..++|.+...+.+|.|+|++.+.+...  ....|.+++++.....   ...+|.+-+||-+
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            356888889999999999999988632  4567888887754432   2479999999854

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=81.33  E-value=8.1  Score=31.57  Aligned_cols=74  Identities=18%  Similarity=0.187  Sum_probs=45.1

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEe--cC-CCcEEEEEEEECCC
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDEG  333 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~--~~-~~~~L~i~v~d~~~  333 (569)
                      +.+++..+++.........+|-|+.+.+-..+.   ....|+...-...+.|||...|.+.  +. ....|.|.+|+...
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence            445666666665443223357888887743221   1234554554556899998888754  22 35589999998653

Outlier of C2 family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	569
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		1e-09
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		2e-09
1rlw_A	126	Calcium-Phospholipid Binding Domain From Cytosolic		5e-09
1rlw_A	126	Calcium-Phospholipid Binding Domain From Cytosolic		1e-05
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		6e-09
1bci_A	138	C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim		9e-09
1bci_A	138	C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim		2e-05
1cjy_A	749	Human Cytosolic Phospholipase A2 Length = 749		2e-08
1cjy_A	749	Human Cytosolic Phospholipase A2 Length = 749		1e-05
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		2e-08
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		2e-08
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		2e-08
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		1e-05
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		2e-08
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		3e-08
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		7e-08
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		7e-08
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		8e-08
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		3e-06
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		2e-07
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		8e-07
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		4e-05
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		8e-07
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		4e-05
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		3e-06
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		1e-05
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		3e-06
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		1e-05
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		3e-06
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		1e-05
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		3e-06
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		1e-05
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		4e-06
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		1e-05
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		7e-06
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		8e-06
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		7e-06
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		8e-06
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		7e-06
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		8e-06
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		7e-05
3pyc_A	132	Crystal Structure Of Human Smurf1 C2 Domain Length		1e-05
2jqz_A	131	Solution Structure Of The C2 Domain Of Human Smurf2		1e-05
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		2e-05
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		3e-05
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		3e-04
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		4e-05
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		5e-05

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 432 DASQKRREVII-----RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTR 483
           D +++R  + I     R VL V V  A+NL   D  G +DPYV L +    KSE++ KT+
Sbjct: 155 DHTERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 214
Query: 484 VVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHD-TFGKDYMGRCILTLTRVILEG 538
            +   LNP WN+TF F +++   D  L  E+WD D T   D+MG     ++ +   G
Sbjct: 215 TIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 271

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 10/104 (9%)
Query: 432 DASQKRREVII-----RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTR 483
           D+ ++R  + I     R VL V V  A+NL   D  G +DPYV L +    KSE++ KT+
Sbjct: 14  DSMERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 73
Query: 484 VVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHD-TFGKDYMG 525
            +   LNP WN+TF F +++   D  L  E+WD D T   D+MG
Sbjct: 74  TIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMG 117

>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 274 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 333
           D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI++      L + + D   
Sbjct: 22  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81
Query: 334 IQSSELIGCAQVRLCELEPG 353
           +   E +G A   +  ++ G
Sbjct: 82  VM-DETLGTATFTVSSMKVG 100

>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 460 DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT 518
           D++   DPYV L +  + ++R +TR  N+ +NP+WN+TF+F+++    ++L   + D + 
Sbjct: 22  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81
Query: 519 FGKDYMGRCILTLTRV 534
              + +G    T++ +
Sbjct: 82  VMDETLGTATFTVSSM 97

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 424 TEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM-KKSETRNKT 482
           TE  + EK    + ++    G L V VI A  L A    GK++PY  ++M  +S T   T
Sbjct: 367 TEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYT---T 423
Query: 483 RVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRVILEGE 539
           R + D LNP WN    F ++D   D+L   ++D D F   D++GR  + + ++  E E
Sbjct: 424 RTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQE 481

>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 274 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 333
           D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI++      L + + D   
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 334 IQSSELIGCAQVRLCELEPG 353
           +   E +G A   +  ++ G
Sbjct: 97  VM-DETLGTATFTVSSMKVG 115

>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 460 DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT 518
           D++   DPYV L +  + ++R +TR  N+ +NP+WN+TF+F+++    ++L   + D + 
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 519 FGKDYMGRCILTLT 532
              + +G    T++
Sbjct: 97  VMDETLGTATFTVS 110

>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 274 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 333
           D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI++      L + + D   
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 334 IQSSELIGCAQVRLCELEPG 353
           +   E +G A   +  ++ G
Sbjct: 97  VM-DETLGTATFTVSSMKVG 115

>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 460 DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT 518
           D++   DPYV L +  + ++R +TR  N+ +NP+WN+TF+F+++    ++L   + D + 
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 519 FGKDYMGRCILTLTRV 534
              + +G    T++ +
Sbjct: 97  VMDETLGTATFTVSSM 112

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 502
           L VTV  A+NL   D  G +DPYV L +    K+E++ KT+ +   LNP WN++F F ++
Sbjct: 18  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 503 DGLHD-MLIAEVWDHD-TFGKDYMGRCILTLTRVI 535
               D  L  E+WD D T   D+MG     ++ ++
Sbjct: 78  PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELM 112

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 502
           L VTV  A+NL   D  G +DPYV L +    K+E++ KT+ +   LNP WN++F F ++
Sbjct: 19  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 503 DGLHD-MLIAEVWDHD-TFGKDYMGRCILTLTRVI 535
               D  L  E+WD D T   D+MG     ++ ++
Sbjct: 79  PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELM 113

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 315
           P GTLEV LV AKGL + D +   DPY  L  R   +K+  ++ +     P WNE F F 
Sbjct: 8   PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT--TPEWNETFIFT 65
Query: 316 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDTKYR 375
           V  E T  L  +I+D +     + +G A +    LEP                 +D +Y+
Sbjct: 66  V-SEGTTELKAKIFDKDVGTEDDAVGEATIP---LEP--VFVEGSIPPTAYNVVKDEEYK 119
Query: 376 GQVHLELLYCPFG 388
           G++ + L + P G
Sbjct: 120 GEIWVALSFKPSG 132

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLN--PIWNQTFDFV 500
            G L V ++ A+ L  +D +   DPYV LT +   T+++   V + +   P WN+TF F 
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFT 65
Query: 501 VEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 538
           V +G  + L A+++D D   + D +G   + L  V +EG
Sbjct: 66  VSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 502
           + VTV  A NL   D  G +DPYV L +    ++ T+ KTR V   LNP+WN+TF F ++
Sbjct: 22  IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 503 DG-LHDMLIAEVWDHD-TFGKDYMG 525
            G +   L  EVWD D T   D+MG
Sbjct: 82  PGDVERRLSVEVWDWDRTSRNDFMG 106

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 503
           G+L V V+ A +L A+D  GK+DP+ +L +     R +T  V   LNP WN+ F F ++D
Sbjct: 13  GILQVKVLKAADLLAADFSGKSDPFCLLEL--GNDRLQTHTVYKNLNPEWNKVFTFPIKD 70
Query: 504 GLHDMLIAEVWDHDTFG-KDYMGRCILTLTRV 534
            +HD+L   V+D D     D++G+  + L  +
Sbjct: 71  -IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSI 101

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 502
           L VTV  A+NL   D  G +DPYV L +    K+E++ KT+ +   LNP WN++F F ++
Sbjct: 20  LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 503 DGLHD-MLIAEVWDHD-TFGKDYMG 525
               D  L  E+WD D T   D+ G
Sbjct: 80  PSDKDRRLSVEIWDWDRTTRNDFXG 104

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 22/130 (16%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
           +S+TV+ A+ L A D  G +DPYV + + K++ R KT   N  LNP+W + F F   +  
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGN--LNPVWEENFHFECHNS- 75
Query: 506 HDMLIAEVWDHDTFGK------------DYMGRCILTLTRVILEGEYTDCFELD-----G 548
            D +   V D D   K            D++G+ I+ +    L GE    + LD      
Sbjct: 76  SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVR--TLSGEMDVWYNLDKRTDKS 133
Query: 549 TKSGKLKLHL 558
             SG ++LH+
Sbjct: 134 AVSGAIRLHI 143

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK----KSKTINNDLNPIWNEHFEFI 315
           L VK+V    L  KD+ G SDPY  L +    E  +    ++KTI   LNP WNE F F 
Sbjct: 23  LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 316 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDT 372
           V + S   L+  ++D+  +   + +G   V L  L   +P                   +
Sbjct: 83  V-NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHKS 141
Query: 373 KYRGQVHLELLYCP 386
           + +G + L++ Y P
Sbjct: 142 RVKGFLRLKMAYMP 155

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 18/135 (13%)
Query: 445 VLSVTVILAENLPASDLMGKADPYVVLTMK-KSETRN----KTRVVNDCLNPIWNQTFDF 499
           +L V V+   +L   D+ G +DPYV L++    E R     +T+ +   LNP WN+ F F
Sbjct: 22  ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 500 VVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV-----ILEGEYTDCFELDGTKS-- 551
            V    H +L  EV+D +   + D++G+  + L+ +      +E  YT    L   +S  
Sbjct: 82  RVNPSNHRLLF-EVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHK 140
Query: 552 ----GKLKLHLKWMP 562
               G L+L + +MP
Sbjct: 141 SRVKGFLRLKMAYMP 155

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 444 GVLSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTF---DF 499
             L+V ++ A+ LPA D  G +DP+V +  +   + + +T+V    LNP WN+TF    F
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 500 VVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 536
             E  +  +L  +V D+D F + D +G   + L +V L
Sbjct: 86  PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL 123

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 248 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLN 305
           ++S L  +    L+  +++AKGL   D  G +DPY  L + P   K+ K  +KT+ N  N
Sbjct: 19  EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 78
Query: 306 PIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 351
           P+WNE  ++     ED   + L + + D++    +E IG  +  L +L+
Sbjct: 79  PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK 127

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRN---KTRVVNDCLNPIWNQTFDF--- 499
           L  T+I A+ L   D  G ADPYV L +    +++   +T+ + +  NP+WN+T  +   
Sbjct: 31  LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 500 VVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRV 534
             ED     L   V D D FG  +++G    +L ++
Sbjct: 91  TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 248 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLN 305
           ++S L  +    L+  +++AKGL   D  G +DPY  L + P   K+ K  +KT+ N  N
Sbjct: 17  EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 76
Query: 306 PIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
           P+WNE  ++     ED   + L + + D++    +E IG  +  L +L+  
Sbjct: 77  PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKAN 127

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRN---KTRVVNDCLNPIWNQTFDF--- 499
           L  T+I A+ L   D  G ADPYV L +    +++   +T+ + +  NP+WN+T  +   
Sbjct: 29  LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 500 VVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRV 534
             ED     L   V D D FG  +++G    +L ++
Sbjct: 89  TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 124

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 317
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 446 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 501
           L V +I A  LPA D+ G +DPYV V  +   + + +T+V    LNP++N+ F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 502 EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 534
           E G   +++A V+D D F K D +G   + +  V
Sbjct: 96  ELGGKTLVMA-VYDFDRFSKHDIIGEFKVPMNTV 128

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 317
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 139

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 446 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 501
           L V +I A  LPA D+ G +DPYV V  +   + + +T+V    LNP++N+ F F V   
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 502 EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 534
           E G   +++A V+D D F K D +G   + +  V
Sbjct: 104 ELGGKTLVMA-VYDFDRFSKHDIIGEFKVPMNTV 136

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 317
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 446 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 501
           L V +I A  LPA D+ G +DPYV V  +   + + +T+V    LNP++N+ F F V   
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 502 EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 534
           E G   +++A V+D D F K D +G   + +  V
Sbjct: 96  ELGGKTLVMA-VYDFDRFSKHDIIGEFKVPMNTV 128

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 317
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
           + + + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 446 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--E 502
           L V +I A  LPA D+ G +DPYV V  +   + + +T+V    LNP++N+ F F V   
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 503 DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 534
           +     L+  V+D D F K D +G   + +  V
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 113

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 317
           L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V   
Sbjct: 19  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
           +   + LV+ +YD +     ++IG  +V +  ++ G
Sbjct: 79  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 114

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 446 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 501
           L V +I A  LPA D+ G +DPYV V  +   + + +T+V    LNP++N+ F F V   
Sbjct: 19  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 502 EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 534
           E G   +++A V+D D F K D +G   + +  V
Sbjct: 79  ELGGKTLVMA-VYDFDRFSKHDIIGEFKVPMNTV 111

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 248 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLN 305
           ++S   L   G L V +++A  L   DL G SDPY  A L       K +K+    N LN
Sbjct: 143 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 202
Query: 306 PIWNEHFEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQV 345
           P +NE   F V  ES ++  L + + D + I  +E+IG  +V
Sbjct: 203 PTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 244

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 444 GVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQT--FD 498
           G+L+VT+I A NL A DL G +DPYV   +++  +   + KT +  + LNP +N+   FD
Sbjct: 153 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 212
Query: 499 FVVEDGLHDMLIAEVWDHDTFG-KDYMGRC 527
              E   +  L   V D+D  G  + +G C
Sbjct: 213 VAPESVENVGLSIAVVDYDCIGHNEVIGVC 242

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 248 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLN 305
           ++S   L   G L V +++A  L   DL G SDPY  A L       K +K+    N LN
Sbjct: 142 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 201
Query: 306 PIWNEHFEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQV 345
           P +NE   F V  ES ++  L + + D + I  +E+IG  +V
Sbjct: 202 PTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 444 GVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQT--FD 498
           G+L+VT+I A NL A DL G +DPYV   +++  +   + KT +  + LNP +N+   FD
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 499 FVVEDGLHDMLIAEVWDHDTFG-KDYMGRC 527
              E   +  L   V D+D  G  + +G C
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVC 241

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 444 GVLSVTVILAENLPASDLMGKADPYV------------VLTMKKSETRNKTRVVNDCLNP 491
           G L + ++ A NL   D  G +DP+V            V+    +E + +T+ V   LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 492 IWNQTFDF---VVEDGLHDMLIAEVWDHDTF-GKDYMGRCILTLT 532
            WNQT  +    +E  +   L   VWD+D F   D++G  ++ L+
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS 122

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIV 316
           + V+++   GL  KD++G SDPY  V    P+     + ++KTI   LNP WNE   F V
Sbjct: 22  VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81
Query: 317 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDTK 373
             +    L+  ++D+  +   + +G   V L  L    P                   ++
Sbjct: 82  HPQQ-HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSR 140
Query: 374 YRGQVHLELLYCP 386
            +G + L++ Y P
Sbjct: 141 VKGYLRLKMTYLP 153

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 445 VLSVTVILAENLPASDLMGKADPYVVLT----MKKSETRNKTRVVNDCLNPIWNQTFDFV 500
           ++ V VI    L   D++G +DPYV +T    M    T  +T+ +   LNP WN+   F 
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 501 VEDGLHDMLIAEVWDHDTFGK-DYMGRCILTL 531
           V    H +L  EV+D +   + D++G+  + L
Sbjct: 81  VHPQQHRLLF-EVFDENRLTRDDFLGQVDVPL 111

>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain Length = 132

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
           + +TV+ A+NL   D     DP+  + +  S   + T  V + L+P WNQ +D  V  G 
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV--GK 64
Query: 506 HDMLIAEVWDHDTF----GKDYMGRCILTLTRVI 535
            D +   VW+H       G  ++G C+  L+  I
Sbjct: 65  TDSITISVWNHKKIHKKQGAGFLG-CVRLLSNAI 97

>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2 Length = 131

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
           L +TV+ A+NL   D     DP+  + +  S   + T  V + L+P WNQ +D  +  G 
Sbjct: 5   LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYI--GK 62
Query: 506 HDMLIAEVWDHDTF----GKDYMGRCILTLTRVILEGEYTDCFELDGTKSG 552
            D +   VW+H       G  ++G C+  L+  I   + T    LD  K G
Sbjct: 63  SDSVTISVWNHKKIHKKQGAGFLG-CVRLLSNAINRLKDTGYQRLDLCKLG 112

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTF-- 497
           +G L V +I   +L A D  G +DP+V L +K     + ++KT++    LNP +N+ F  
Sbjct: 36  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 498 DFVVEDGLHDMLIAEVWDHDTFGK--DYMGRCILTLT 532
           D    D     L   VWD+D  GK  DY+G C L ++
Sbjct: 96  DIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 131

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 7/142 (4%)
Query: 251 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPE--KTKKSKTINNDLNPI 307
           EL       + VK++   GL  KD++G SDPY  V    P+     + ++KTI   LNP 
Sbjct: 1   ELHNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPK 60
Query: 308 WNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXX 364
           WNE   F V  +    ++  ++D+  +   + +G   V L  L    P            
Sbjct: 61  WNEEILFRVLPQR-HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFV 119
Query: 365 XXXXQRDTKYRGQVHLELLYCP 386
                  ++ +G + L++ Y P
Sbjct: 120 LHPRSHKSRVKGYLRLKMTYLP 141

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 445 VLSVTVILAENLPASDLMGKADPYVVLT----MKKSETRNKTRVVNDCLNPIWNQTFDFV 500
           V+ V VI    L   D++G +DPYV +T    M    T  +T+ +   LNP WN+   F 
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 501 VEDGLHDMLIAEVWDHDTFGK-DYMGRCILTL 531
           V    H +L  EV+D +   + D++G+  + L
Sbjct: 69  VLPQRHRILF-EVFDENRLTRDDFLGQVDVPL 99

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTF-- 497
           +G L V +I   +L A D  G +DP+V L +K     + ++KT++    LNP +N+ F  
Sbjct: 36  QGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 498 DFVVEDGLHDMLIAEVWDHDTFGK--DYMGRCILTLT 532
           D    D     L   VWD+D  GK  DY+G C L ++
Sbjct: 96  DIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 131

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTF-- 497
           +G L V +I   +L A D  G +DP+V L +K     + ++KT++    LNP +N+ F  
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 498 DFVVEDGLHDMLIAEVWDHDTFGK--DYMGRCILTLT 532
           D    D     L   VWD+D  GK  DY+G C L ++
Sbjct: 74  DIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	569
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-40
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	4e-32
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	7e-40
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	6e-27
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	4e-37
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-28
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-36
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-27
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	4e-36
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	1e-32
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	9e-36
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	2e-31
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-35
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-18
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-15
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-33
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-17
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	5e-32
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	6e-24
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	3e-30
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-21
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	1e-29
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	5e-27
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-28
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-27
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	4e-27
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	1e-26
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	8e-27
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	5e-21
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-24
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	5e-22
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	5e-24
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-21
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	7e-24
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	9e-24
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	1e-23
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	8e-23
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	3e-23
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-18
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	8e-23
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	6e-22
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-22
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	3e-19
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	2e-22
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	2e-22
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	5e-22
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	3e-17
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	9e-22
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	3e-17
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	1e-20
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	4e-17
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-20
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	1e-18
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	4e-20
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-17
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	4e-20
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-17
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	1e-19
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	4e-16
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	2e-19
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	2e-18
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	2e-19
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-09
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-19
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	8e-19
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	3e-19
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	5e-16
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	3e-19
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	1e-17
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	3e-19
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-15
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-18
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-18
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-18
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-17
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	2e-18
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	2e-11
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-12
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	1e-11
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-12
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	5e-08
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	6e-09
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	4e-06
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	2e-07
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	1e-05
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	3e-07
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	1e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-05
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	1e-04

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  142 bits (360), Expect = 2e-40
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 10/138 (7%)

Query: 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 314
            P GTLEV LV AKGL + D +   DPY  L  R   +  K +        P WNE F F
Sbjct: 7   GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR--TQDQKSNVAEGMGTTPEWNETFIF 64

Query: 315 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTK 373
            V + +T+ L  +I+D +     + +G A + L  +   G +      +VK      D +
Sbjct: 65  TVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DEE 117

Query: 374 YRGQVHLELLYCPFGMEN 391
           Y+G++ + L + P G  +
Sbjct: 118 YKGEIWVALSFKPSGPSS 135

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  119 bits (300), Expect = 4e-32
 Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDC-LNPIWNQTFDFVVE 502
           G L V ++ A+ L  +D +   DPYV LT +      K+ V       P WN+TF F V 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--QDQKSNVAEGMGTTPEWNETFIFTVS 67

Query: 503 DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL---DGTKSGKLKLHL 558
           +G    L A+++D D   + D +G   + L  V +EG           D    G++ + L
Sbjct: 68  EG-TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVAL 126

Query: 559 KWMP 562
            + P
Sbjct: 127 SFKP 130

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  142 bits (359), Expect = 7e-40
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 7/143 (4%)

Query: 251 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPI 307
           EL       + VK++   GL  KD++G SDPY  + +         + ++KTI   LNP 
Sbjct: 1   ELHNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPK 60

Query: 308 WNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 367
           WNE   F V  +    ++  ++D+  +   + +G   V L  L     +       KD  
Sbjct: 61  WNEEILFRVLPQ-RHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFV 119

Query: 368 VQRDT---KYRGQVHLELLYCPF 387
           +   +   + +G + L++ Y P 
Sbjct: 120 LHPRSHKSRVKGYLRLKMTYLPK 142

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  106 bits (266), Expect = 6e-27
 Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 17/136 (12%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDF 499
            V+ V VI    L   D++G +DPYV +T+        T  +T+ +   LNP WN+   F
Sbjct: 8   RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67

Query: 500 VVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL-----------D 547
            V       ++ EV+D +   + D++G+  + L  +  E    +                
Sbjct: 68  RVLP-QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK 126

Query: 548 GTKSGKLKLHLKWMPQ 563
               G L+L + ++P+
Sbjct: 127 SRVKGYLRLKMTYLPK 142

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  134 bits (338), Expect = 4e-37
 Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 12/153 (7%)

Query: 240 KIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKK 296
             V  L  D      +    + V+++   GL  KD++G SDPY  + +         + +
Sbjct: 7   VEVFGLLEDE-----ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQ 61

Query: 297 SKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK 356
           +KTI   LNP WNE   F V  +    L+  ++D+  +   + +G   V L  L     +
Sbjct: 62  TKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120

Query: 357 DVWLKLVKDLDVQ---RDTKYRGQVHLELLYCP 386
                  KD  +      ++ +G + L++ Y P
Sbjct: 121 LERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  109 bits (275), Expect = 2e-28
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 17/135 (12%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFDF 499
            ++ V VI    L   D++G +DPYV +T+        T  +T+ +   LNP WN+   F
Sbjct: 20  RIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILF 79

Query: 500 VVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL-----------D 547
            V       L+ EV+D +   + D++G+  + L  +  E    +                
Sbjct: 80  RVHP-QQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHK 138

Query: 548 GTKSGKLKLHLKWMP 562
               G L+L + ++P
Sbjct: 139 SRVKGYLRLKMTYLP 153

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  132 bits (333), Expect = 1e-36
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 8/132 (6%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 316
           G L V +  A  +  K   GK DP   +  +    + KK+K ++N+LNP+WNE  EF + 
Sbjct: 7   GMLRVIVESASNI-PKTKFGKPDPIVSVIFKD---EKKKTKKVDNELNPVWNEILEFDLR 62

Query: 317 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKY 374
               + +  L + + D E I  ++LIG A V L +L   + + +  KL+  L+ ++    
Sbjct: 63  GIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN-EKGQDT 121

Query: 375 RGQVHLELLYCP 386
              + L + Y P
Sbjct: 122 GATIDLVIGYDP 133

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  107 bits (268), Expect = 1e-27
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 14/130 (10%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV-- 501
           G+L V V  A N+P     GK DP V +  K    + KT+ V++ LNP+WN+  +F +  
Sbjct: 7   GMLRVIVESASNIPK-TKFGKPDPIVSVIFKD--EKKKTKKVDNELNPVWNEILEFDLRG 63

Query: 502 -EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL-------DGTKSG 552
                   L   V D +T G+   +G   + L  +  +   +  ++L             
Sbjct: 64  IPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGA 123

Query: 553 KLKLHLKWMP 562
            + L + + P
Sbjct: 124 TIDLVIGYDP 133

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  130 bits (329), Expect = 4e-36
 Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 250 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 309
           S  ++K VG L+VK+++A  L   D  GKSDP+ +L +        ++ T+  +LNP WN
Sbjct: 5   SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN---DRLQTHTVYKNLNPEWN 61

Query: 310 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ 369
           + F F ++D     L V ++D++G +  + +G   + L  +  G+     LK        
Sbjct: 62  KVFTFPIKD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL---- 116

Query: 370 RDTKYRGQVHLELLYC 385
            +  ++G ++LE+   
Sbjct: 117 -EQAFKGVIYLEMDLI 131

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  120 bits (304), Expect = 1e-32
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 7/122 (5%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 503
           G+L V V+ A +L A+D  GK+DP+ +L +     R +T  V   LNP WN+ F F ++D
Sbjct: 13  GILQVKVLKAADLLAADFSGKSDPFCLLELGND--RLQTHTVYKNLNPEWNKVFTFPIKD 70

Query: 504 GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYT---DCFELDGTKSGKLKLHLK 559
            +HD+L   V+D D     D++G+  + L  +             +L+    G + L + 
Sbjct: 71  -IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 129

Query: 560 WM 561
            +
Sbjct: 130 LI 131

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  129 bits (326), Expect = 9e-36
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 12/129 (9%)

Query: 260 LEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 316
             V +++A  +T     D++   DPY  LF+   P+  K+++  NND+NP+WNE FEFI+
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 317 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 376
           +      L + + D   +   E +G A   +  ++ G+ K+V            +     
Sbjct: 65  DPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIF--------NQVTEM 115

Query: 377 QVHLELLYC 385
            + + L   
Sbjct: 116 VLEMSLEVA 124

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  117 bits (294), Expect = 2e-31
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 444 GVLSVTVILAENL---PASDLMGKADPYVVLTM-KKSETRNKTRVVNDCLNPIWNQTFDF 499
              +V V+ A  +      D++   DPYV L +    ++R +TR  N+ +NP+WN+TF+F
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 500 VVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLK 559
           +++    ++L   + D +    + +G    T++ + +  +    F  +      L++ L+
Sbjct: 63  ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLE 122

Query: 560 W 560
            
Sbjct: 123 V 123

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  134 bits (338), Expect = 1e-35
 Identities = 66/280 (23%), Positives = 106/280 (37%), Gaps = 65/280 (23%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 317
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 19  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 78

Query: 318 DE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYR 375
               + + LV+ +YD +     ++I                                   
Sbjct: 79  YSELAGKTLVMAVYDFDRFSKHDII----------------------------------- 103

Query: 376 GQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQ 435
           G+  + +    FG                                    E  E   D   
Sbjct: 104 GEFKVPMNTVDFGHVTEEWRDLQSA----------------------EKEEQEKLGDICF 141

Query: 436 KRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPI 492
             R V   G L+V ++ A+NL   D+ G +DPYV + +    K   + KT +  + LNP 
Sbjct: 142 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 201

Query: 493 WNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGRCIL 529
           +N++F F V  E      ++  V D+D  GK D +G+  +
Sbjct: 202 YNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 241

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 85.6 bits (212), Expect = 1e-18
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDFVV 501
              L V +I A  LPA D+ G +DPYV +  +   + + +T+V    LNP++N+ F F V
Sbjct: 18  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 77

Query: 502 --EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKS------G 552
              +     L+  V+D D F K D +G   + +  V       +  +L   +       G
Sbjct: 78  PYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLG 137

Query: 553 KLKLHLKWMPQ 563
            +   L+++P 
Sbjct: 138 DICFSLRYVPT 148

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 75.2 bits (185), Expect = 3e-15
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 315
           G L V +++AK L   D+ G SDPY  + +    ++ KK KT    N LNP +NE F F 
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209

Query: 316 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ 369
           V  E      +VV + D + I  ++ IG  +V +     G     W  ++ +    
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIG--KVFVGYNSTGAELRHWSDMLANPRRP 263

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  128 bits (323), Expect = 2e-33
 Identities = 67/279 (24%), Positives = 106/279 (37%), Gaps = 62/279 (22%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 317
             L V+++QA  L  KD  G SDPY  +++ P  +K  ++K     LNPI+NE F+F   
Sbjct: 20  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF--- 76

Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL-VKDLDVQRDTKYRG 376
                                           +   ++    L   V D D        G
Sbjct: 77  -------------------------------SVPLAELAQRKLHFSVYDFDRFSRHDLIG 105

Query: 377 QVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQK 436
           QV L+ L                      L + +  G    +    G     L    +  
Sbjct: 106 QVVLDNLLELAEQP-----------PDRPLWRDILEGGS--EKADLGELNFSLCYLPT-- 150

Query: 437 RREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIW 493
                  G+L+VT+I A NL A DL G +DPYV  ++    +   + KT +  + LNP +
Sbjct: 151 ------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTY 204

Query: 494 NQTFDF-VVEDGLHDM-LIAEVWDHDTFGK-DYMGRCIL 529
           N+   F V  + + ++ L   V D+D  G  + +G C +
Sbjct: 205 NEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 83.0 bits (205), Expect = 1e-17
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 11/132 (8%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDFVV 501
              L V ++ A +LPA D  G +DPYV +  +   + + +T+V    LNPI+N+TF F V
Sbjct: 19  SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 78

Query: 502 --EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD-------GTKS 551
              +     L   V+D D F + D +G+ +L     + E         D           
Sbjct: 79  PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADL 138

Query: 552 GKLKLHLKWMPQ 563
           G+L   L ++P 
Sbjct: 139 GELNFSLCYLPT 150

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score =  130 bits (327), Expect = 5e-32
 Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 244 ILPGDYSELELKPVGTLEVKLVQAKGLTNK---DLIGKSDPYAVLFVRPLPEKTKKSKTI 300
           I P  +  +E +      V +++A  +T     D++   DPY  LF+   P+  K+++  
Sbjct: 4   IDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF 63

Query: 301 NNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWL 360
           NND+NP+WNE FEFI++      L + + D   +   E +G A   +  ++ G+ K+V  
Sbjct: 64  NNDINPVWNETFEFILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPF 122

Query: 361 KL--VKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFS 402
               V ++ ++   +      L         E  F      +  
Sbjct: 123 IFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIR 166

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score =  105 bits (262), Expect = 6e-24
 Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 435 QKRREVIIRGVLSVTVILAENL---PASDLMGKADPYVVLTM-KKSETRNKTRVVNDCLN 490
               E       +V V+ A  +      D++   DPYV L +    ++R +TR  N+ +N
Sbjct: 9   HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDIN 68

Query: 491 PIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTK 550
           P+WN+TF+F+++    ++L   + D +    + +G    T++ + +  +    F  +   
Sbjct: 69  PVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVT 128

Query: 551 SGKLKLHLKWMPQPIYRD 568
              L++ L+    P  R 
Sbjct: 129 EMVLEMSLEVCSCPDLRF 146

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  114 bits (288), Expect = 3e-30
 Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 17/151 (11%)

Query: 413 GEKALKSGANGTEAIELEKDASQKRREVII-----RGVLSVTVILAENLPASDLMGKADP 467
           G   +  G  G        D+ ++R  + I     R VL V V  A+NL   D  G +DP
Sbjct: 1   GSPGISGGGGG------ILDSMERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDP 54

Query: 468 YVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHDTFGK-D 522
           YV L +    KSE++ KT+ +   LNP WN+TF F +++   D  L  E+WD D   + D
Sbjct: 55  YVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRND 114

Query: 523 YMGRCILTLTRVILEGEYTDCFELDGTKSGK 553
           +MG     ++ +   G     F+L   + G+
Sbjct: 115 FMGSLSFGISELQKAGV-DGWFKLLSQEEGE 144

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 90.5 bits (225), Expect = 1e-21
 Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 315
             L V +  AK L   D  G SDPY  L + P P+    +K+KTI   LNP WNE F F 
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90

Query: 316 V-EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 365
           + E +  + L V I+D +    ++ +G     + EL+   V   W KL+  
Sbjct: 91  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG-WFKLLSQ 140

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  112 bits (281), Expect = 1e-29
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 16/128 (12%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
           + +TV+ A+NL   D     DP+  + +  S   + T  V + L+P WNQ +D  V    
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK-- 64

Query: 506 HDMLIAEVWDHDTFGKD----YMGRCILTLTRVILEGEYTDCFELDGTK---------SG 552
            D +   VW+H    K     ++G   L     I   + T    LD  K          G
Sbjct: 65  TDSITISVWNHKKIHKKQGAGFLGCVRLLS-NAISRLKDTGYQRLDLCKLNPSDTDAVRG 123

Query: 553 KLKLHLKW 560
           ++ + L+ 
Sbjct: 124 QIVVSLQT 131

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  105 bits (263), Expect = 5e-27
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
           + + ++ AK L  KD     DP+A + V     +   + T+ N L+P WN+H++  V   
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDG-SGQCHSTDTVKNTLDPKWNQHYDLYVGKT 65

Query: 320 STQHLVVRIYDDEGI---QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRG 376
               + + +++ + I   Q +  +GC ++    +   K        +  L+       RG
Sbjct: 66  --DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRG 123

Query: 377 QVHLELLY 384
           Q+ + L  
Sbjct: 124 QIVVSLQT 131

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  110 bits (277), Expect = 2e-28
 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 9/136 (6%)

Query: 250 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 309
           S   L     L++ ++ AK   NK       PY  + V     ++KK++  NN  +P W 
Sbjct: 28  SMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNTNSPKWK 84

Query: 310 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKLVKDL 366
           +    IV   S   L  R++  + ++S  L+G A + + E       K+++V + L    
Sbjct: 85  QPLTVIVTPVSK--LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG 142

Query: 367 DVQRDTKYRGQVHLEL 382
           D +  T+  G + + L
Sbjct: 143 D-KEPTETIGDLSICL 157

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  107 bits (269), Expect = 2e-27
 Identities = 31/133 (23%), Positives = 45/133 (33%), Gaps = 15/133 (11%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE 502
           +  L +TVI A+            PYV +T+       KT   N+  +P W Q    +V 
Sbjct: 35  KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSK--KTEKCNNTNSPKWKQPLTVIVT 92

Query: 503 DGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEG-----EYTDCFELDGTKS----- 551
                 L   VW H T   D  +G   L +   +        E     +L G K      
Sbjct: 93  P--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETI 150

Query: 552 GKLKLHLKWMPQP 564
           G L + L  +   
Sbjct: 151 GDLSICLDGLQLE 163

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  106 bits (265), Expect = 4e-27
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 20/144 (13%)

Query: 250 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 309
            +   K    + + +V A+GL  KD  G SDPY  + V    +  K++KTI  +LNP+W 
Sbjct: 9   LDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVG---KTKKRTKTIYGNLNPVWE 65

Query: 310 EHFEFIVEDESTQHLVVRIYD-----------DEGIQSSELIGCAQVRLCELEPGKVKDV 358
           E+F F   + S+  + VR+ D               +S + +G   + +  L      DV
Sbjct: 66  ENFHFECHN-SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE--MDV 122

Query: 359 WLKLVKDLDVQRDTKYRGQVHLEL 382
           W  L K       +   G + L +
Sbjct: 123 WYNLDK---RTDKSAVSGAIRLHI 143

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  104 bits (262), Expect = 1e-26
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 22/133 (16%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 503
             +S+TV+ A+ L A D  G +DPYV + + K  T+ +T+ +   LNP+W + F F   +
Sbjct: 17  AKISITVVCAQGLQAKDKTGSSDPYVTVQVGK--TKKRTKTIYGNLNPVWEENFHFECHN 74

Query: 504 GLHDMLIAEVWDHDTFGK------------DYMGRCILTLTRVILEGEYTDCFELD---- 547
              D +   V D D   K            D++G+ I+ +    L GE    + LD    
Sbjct: 75  -SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRT--LSGEMDVWYNLDKRTD 131

Query: 548 -GTKSGKLKLHLK 559
               SG ++LH+ 
Sbjct: 132 KSAVSGAIRLHIS 144

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 98.2 bits (245), Expect = 2e-24
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEFI 315
             L+  +++AKGL   D  G +DPY  L + P   K+ K  +KT+ N  NP+WNE  ++ 
Sbjct: 29  SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88

Query: 316 V---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 364
               ED   + L + + D++    +E IG  +  L +L+  + K+  + L +
Sbjct: 89  GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 91.3 bits (227), Expect = 5e-22
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 14/138 (10%)

Query: 423 GTEAIELEKDASQKRREVII-------RGVLSVTVILAENLPASDLMGKADPYVVLTM-- 473
           G+EA   + D +     +            L  T+I A+ L   D  G ADPYV L +  
Sbjct: 1   GSEANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLP 60

Query: 474 -KKSETRNKTRVVNDCLNPIWNQTFDFVV---EDGLHDMLIAEVWDHDTFGK-DYMGRCI 528
                 + +T+ + +  NP+WN+T  +     ED     L   V D D FG  +++G   
Sbjct: 61  GASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 120

Query: 529 LTLTRVILEGEYTDCFEL 546
            +L ++           L
Sbjct: 121 FSLKKLKANQRKNFNICL 138

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 96.8 bits (241), Expect = 5e-24
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 15/128 (11%)

Query: 444 GVLSVTVILAENLPASDLMGK-----------ADPYVVLTMKKSETRNKTRVVNDCLNPI 492
           G+L + +  A +L  +    +            DPY+ L +  S    +T       +P 
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG-QTATKQKTNSPA 64

Query: 493 WNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDCFELDGTKS 551
           W+  F   V +G    +   V+     G D ++  C +    ++  G       +D    
Sbjct: 65  WHDEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPE 122

Query: 552 GKLKLHLK 559
           GK+ + + 
Sbjct: 123 GKVYVIID 130

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 89.1 bits (221), Expect = 2e-21
 Identities = 24/141 (17%), Positives = 54/141 (38%), Gaps = 27/141 (19%)

Query: 255 KPVGTLEVKLVQAKGLTNKDLIGK-----------SDPYAVLFVRPLPEKTKKSKTINND 303
              G L++K+ +A  L       +            DPY  L V     +  ++ T    
Sbjct: 3   VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD--SRIGQTATKQKT 60

Query: 304 LNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLK 361
            +P W++ F   V +   + + + ++ D  I   + +    ++  EL     +  + W+ 
Sbjct: 61  NSPAWHDEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI- 117

Query: 362 LVKDLDVQRDTKYRGQVHLEL 382
              DL+ +      G+V++ +
Sbjct: 118 ---DLEPE------GKVYVII 129

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 97.4 bits (242), Expect = 7e-24
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 16/140 (11%)

Query: 434 SQKRREVIIRGVLSVTVILAENLPASDLMGK----------ADPYVVLTMKKSETRNKTR 483
           S     +   G L V +  A  L  +    +           DPY+ +++ +     +T 
Sbjct: 19  SMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVG-QTS 77

Query: 484 VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTD 542
                  P +N+ F   V DG H  L   V+     G D ++  C L    ++     +D
Sbjct: 78  TKQKTNKPTYNEEFCANVTDGGH--LELAVFHETPLGYDHFVANCTLQFQELLRTTGASD 135

Query: 543 CFE--LDGTKSGKLKLHLKW 560
            FE  +D    GK+ + +  
Sbjct: 136 TFEGWVDLEPEGKVFVVITL 155

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 97.0 bits (241), Expect = 9e-24
 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 28/154 (18%)

Query: 243 PILPGDYSELELKPVGTLEVKLVQAKGLTNKDLIGK----------SDPYAVLFVRPLPE 292
            +  G  S   +K  G L V++ +A GL       +           DPY  + V     
Sbjct: 14  LVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ--V 71

Query: 293 KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-- 350
           +  ++ T      P +NE F   V D    HL + ++ +  +     +    ++  EL  
Sbjct: 72  RVGQTSTKQKTNKPTYNEEFCANVTD--GGHLELAVFHETPLGYDHFVANCTLQFQELLR 129

Query: 351 --EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLEL 382
                   + W+ L             G+V + +
Sbjct: 130 TTGASDTFEGWVDLEP----------EGKVFVVI 153

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 95.9 bits (239), Expect = 1e-23
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDF-- 499
              L+V ++ A+ LPA D  G +DP+V + +    + + +T+V    LNP WN+TF F  
Sbjct: 25  ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 84

Query: 500 -VVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL--DGTKSG 552
              E  +  +L  +V D+D F + D +G   + L +V L    T   +L   G  SG
Sbjct: 85  FPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSSG 141

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 93.6 bits (233), Expect = 8e-23
 Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 3/108 (2%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 316
            TL VK+++A+ L  KD  G SDP+  +++ P  +   ++K    +LNP WNE F F   
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85

Query: 317 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
             E    + L +++ D +    ++ IG   + L +++  +++  W  L
Sbjct: 86  PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 94.8 bits (236), Expect = 3e-23
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 16/120 (13%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM------------KKSETRNKTRVVNDCLN 490
            G L + ++ A NL   D  G +DP+V + +              +E + +T+ V   LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 491 PIWNQTFDFVV---EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 546
           P WNQT  +     E  +   L   VWD+D F   D++G  ++ L+           + L
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 81.7 bits (202), Expect = 1e-18
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-----------LPEKTKKSKTINNDLNP 306
           G L + ++QA+ L  +D  G SDP+  +++ P             E  +++K +   LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 307 IWNEHFEFIV---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
            WN+   +     E    + L V ++D +   S++ +G   + L           W  L
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 93.6 bits (233), Expect = 8e-23
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 316
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 317 -EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
             +   + LV+ +YD +     ++IG  +V +  ++ G V + W  L
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 91.3 bits (227), Expect = 6e-22
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 6/109 (5%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYV--VLTMKKSETRNKTRVVNDCLNPIWNQTFDFV 500
              L V +I A  LPA D+ G +DPYV   L   K +   +T+V    LNP++N+ F F 
Sbjct: 33  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF-ETKVHRKTLNPVFNEQFTFK 91

Query: 501 V--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 546
           V   +     L+  V+D D F K D +G   + +  V       +  +L
Sbjct: 92  VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 92.8 bits (231), Expect = 2e-22
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 443 RGVLSVTVILAENLPASDLM-GKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFD 498
              L V V     L  +D    +++PYV   +   K  + + KT +  D +NP++++T  
Sbjct: 22  TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLR 81

Query: 499 FVVE-DGLHD-MLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKLK 555
           + +    L    L   VW H  FG+  ++G   + +    L+ +   C  L G  S + +
Sbjct: 82  YEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESE 141

Query: 556 LHLKW 560
            H   
Sbjct: 142 GHHHH 146

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 83.6 bits (207), Expect = 3e-19
 Identities = 21/122 (17%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 258 GTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 314
            +L V + +   L   D    +S+PY   ++ P   +  K KT    + +NP+++E   +
Sbjct: 23  QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82

Query: 315 IV--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDT 372
            +     + + L   ++       +  +G A++++   +  K  D  L L   +  + + 
Sbjct: 83  EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESEG 142

Query: 373 KY 374
            +
Sbjct: 143 HH 144

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 92.9 bits (231), Expect = 2e-22
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 4/112 (3%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDFVV 501
              L V +I A  LPA D+ G +DPYV + +    + + +T+V    LNP++N+ F F V
Sbjct: 41  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100

Query: 502 --EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK 550
              +     L+  V+D D F K D +G   + +  V       +  +L   +
Sbjct: 101 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 152

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 316
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 42  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 101

Query: 317 -EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
             +   + LV+ +YD +     ++IG  +V +  ++ G V + W  L
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 148

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 91.2 bits (227), Expect = 5e-22
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 10/120 (8%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 499
              L VT++ A++LP+ +     +PYV +     +  + + +T+ V   L P WNQTF +
Sbjct: 20  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79

Query: 500 --VVEDGLHD-MLIAEVWDHDTFGK---DYMGRCILTLTRVILEGEYTDCFELDGTKSGK 553
             V      + ML   +WD     +   +++G  ++ L   +L+ E    ++L    SG 
Sbjct: 80  SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKLQTHDSGP 138

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 77.7 bits (192), Expect = 3e-17
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 315
             L V ++ AK L +++     +PY  ++  P       +++KT+   L P WN+ F + 
Sbjct: 21  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80

Query: 316 V---EDESTQHLVVRIYDDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL 362
                +   + L + ++D   +  + SE +G   + L           W KL
Sbjct: 81  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 131

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 90.0 bits (224), Expect = 9e-22
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 9/106 (8%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 499
              L VT++ A++LP+ +     +PYV +     +  + + +T+ V   L P WNQTF +
Sbjct: 17  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76

Query: 500 --VVEDGLHD-MLIAEVWDHDTFGK---DYMGRCILTLTRVILEGE 539
             V      + ML   +WD     +   +++G  ++ L   +L+ E
Sbjct: 77  SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 122

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 77.3 bits (191), Expect = 3e-17
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 315
             L V ++ AK L +++     +PY  ++  P       +++KT+   L P WN+ F + 
Sbjct: 18  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77

Query: 316 V---EDESTQHLVVRIYDDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL 362
                +   + L + ++D   +  + SE +G   + L           W KL
Sbjct: 78  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 128

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 87.8 bits (218), Expect = 1e-20
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 499
             VL + +I  + L +    G  DPYV +++          KT+ V DC +P +++ F F
Sbjct: 26  DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFF 84

Query: 500 -VVEDGLHDMLIAEVWDHDTFGK--DYMGRCILTLTRVILEGEYTDC-FELDGTKSGKLK 555
            V E+     L+  VW+  +  +    +G     +  ++   +     + L G   G+  
Sbjct: 85  PVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGR-T 143

Query: 556 LHLK 559
            HLK
Sbjct: 144 KHLK 147

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 77.8 bits (192), Expect = 4e-17
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF- 314
             L + +++ KGL +K   G  DPY  + + P   + +  KT  + +  +P ++EHF F 
Sbjct: 27  RVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP 85

Query: 315 IVEDESTQHLVVRIYDDEGIQ-SSELIGCAQVRLCELE-PGKVKDVWLKL 362
           + E++  + L+V +++       S LIGC    +  L  P K    W  L
Sbjct: 86  VQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYL 135

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 86.6 bits (215), Expect = 2e-20
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 499
            G L + V+  ++L   D     +PYV   +       ++ KT++     NP +N+   +
Sbjct: 19  NGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY 77

Query: 500 --VVEDGLHD-MLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKS 551
               ++ L    L   V   ++  +  ++G   L L    L  E    ++L     
Sbjct: 78  SGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATY 133

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 315
           GTL + ++  K L  +D     +PY   ++ P   KT  +K+K      NP +NE   + 
Sbjct: 20  GTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78

Query: 316 V---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
               E    + L + +   E ++ +  +G   + L +    K    W +L
Sbjct: 79  GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQL 128

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 85.9 bits (213), Expect = 4e-20
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 9/112 (8%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 499
           R  L V V    NL A      +DPYV + +   K+   R KT V    LNP+++Q+FDF
Sbjct: 23  RNKLIVVVHACRNLIAFS-EDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81

Query: 500 VV--EDGLHDMLIAEVWDHDTFGKD---YMGRCILTLTRVILEGEYTDCFEL 546
            V   +     L   V +   F       +G+ ++ L    L   +T  ++L
Sbjct: 82  SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDL 133

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 78.6 bits (194), Expect = 2e-17
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 315
             L V +   + L        SDPY  +++ P   ++ + KT      LNP++++ F+F 
Sbjct: 24  NKLIVVVHACRNLIAFS-EDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS 82

Query: 316 V--EDESTQHLVVRIYDDEGIQSSE--LIGCAQVRLCELEPGKVKDVWLKLVKD 365
           V   +   + L V + +  G  S +  L+G   V L   E  K    W  L +D
Sbjct: 83  VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 85.8 bits (213), Expect = 4e-20
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 499
              + V +I A NL A D+ G +DPYV + +    K   + KT      LNPI+N++F F
Sbjct: 15  ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAF 74

Query: 500 VVE-DGLHD-MLIAEVWDHDTFGK-DYMGRCIL 529
            +  + L +  +I  V D D   + D +G+  L
Sbjct: 75  DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYL 107

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 315
            ++ V +++A+ L   D+ G SDPY  +++    ++ +K KT     +LNPI+NE F F 
Sbjct: 16  NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75

Query: 316 VEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
           +  E  +   +++ + D + +  +++IG   +        
Sbjct: 76  IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGE 115

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 85.1 bits (211), Expect = 1e-19
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 499
           +G L V +I   +L A D  G +DP+V L +      + ++KT++    LNP +N+ F +
Sbjct: 36  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95

Query: 500 VVE-DGLHD-MLIAEVWDHDTFGK-DYMGRCIL 529
            ++   L    L   VWD+D     DY+G C L
Sbjct: 96  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL 128

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 75.1 bits (185), Expect = 4e-16
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 315
           G L V +++   L   D  G SDP+  L+++P   K  K KT      LNP +NE F + 
Sbjct: 37  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96

Query: 316 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 367
           +   D + + L + ++D +  +S++ IG  Q+ +     G+    W + +K+ D
Sbjct: 97  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKD 148

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 6/108 (5%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK-KSKTINNDLNPIWNEHFEFIV 316
             L V  ++A      +  G  D Y    V       + ++      L+  W E     +
Sbjct: 26  AELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 317 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
             E+  T  L + +   +      + G  ++ L           W +L
Sbjct: 83  AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 80.5 bits (199), Expect = 2e-18
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 10/117 (8%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM--KKSETRNKTRVVNDCLNPIWNQTFDFV 500
           +  L VT + A         G  D YV  ++  +      +T +    L+  W +     
Sbjct: 25  KAELFVTRLEAVTSNHD---GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP 81

Query: 501 V--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD--GTKSG 552
           +  E+     L   +   D F +    G   L L    +        EL   G  SG
Sbjct: 82  LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPSSG 138

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 83.9 bits (207), Expect = 2e-19
 Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 12/131 (9%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 503
            +L V V  A+   A +   K + YV L ++    ++ T  V     P W Q F F +  
Sbjct: 5   SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN--VKSTTIAVRGS-QPSWEQDFMFEINR 58

Query: 504 GLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGE--YTDCFELDG---TKSGKLKLHL 558
            L   L  EVW+        +G   + L  +    E    +   LD        ++    
Sbjct: 59  -LDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTK 117

Query: 559 KWMPQPIYRDT 569
                 I  D 
Sbjct: 118 DPTFHRILLDA 128

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 20/138 (14%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 317
             L V + +AK    ++   K + Y  L V+ +   T   +       P W + F F + 
Sbjct: 5   SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRG----SQPSWEQDFMFEIN 57

Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL----EPGKVKDVWLKLVKDLDVQRDTK 373
                 L V ++ ++G+    ++G   + L  +    E G  +  WL L     +  D++
Sbjct: 58  RLDLG-LTVEVW-NKGLIWDTMVGTVWIPLRTIRQSNEEGPGE--WLTLDSQA-IMADSE 112

Query: 374 YRGQV----HLELLYCPF 387
             G      H  LL   F
Sbjct: 113 ICGTKDPTFHRILLDAHF 130

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 84.8 bits (210), Expect = 2e-19
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 5/109 (4%)

Query: 258 GTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 314
           G LEV++++A+ LT K        PY  +++        K KT      L+P++ +   F
Sbjct: 30  GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89

Query: 315 IVEDESTQHLVVRIYDDEG-IQSSELIGCAQVRLCELEPGKVKDVWLKL 362
               +  + L V ++ D G +     +G AQ+ L EL+   +   W KL
Sbjct: 90  DESPQG-KVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 83.3 bits (206), Expect = 8e-19
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 443 RGVLSVTVILAENLPASDLM-GKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFD 498
           +G L V VI A +L           PYV + +        + KTR+    L+P++ Q+  
Sbjct: 29  KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88

Query: 499 FVVEDGLHDMLIAEVW-DHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 546
           F        +L   VW D+       +MG   + L  + L       ++L
Sbjct: 89  FDESPQ-GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 84.0 bits (208), Expect = 3e-19
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 6/93 (6%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 499
            G L+V ++ A+NL   D+ G +DPYV + +    K   + KT +  + LNP +N++F F
Sbjct: 24  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83

Query: 500 VVE-DGLHDM-LIAEVWDHDTFGK-DYMGRCIL 529
            V  + +  + ++  V D+D  GK D +G+  +
Sbjct: 84  EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 116

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 74.8 bits (184), Expect = 5e-16
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 315
           G L V +++AK L   D+ G SDPY  + +    ++ KK KT    N LNP +NE F F 
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 316 VEDE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
           V  E      +VV + D + I  ++ IG   V        
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 84.0 bits (208), Expect = 3e-19
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 6/112 (5%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT---KKSKTINNDLNPIWNEHFEF 314
               + ++Q   L+             + V P  E T    +++ ++     ++NE F  
Sbjct: 43  KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102

Query: 315 IVEDE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-GKVKDVWLKLV 363
            +       + L V +   +     E +G AQ+ L E+   G+    W  L+
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 79.0 bits (195), Expect = 1e-17
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM----KKSETRNKTRVVNDCLNPIWNQTFD 498
               ++ +I   NL A          + + +    + +    +TR ++     ++N+ F 
Sbjct: 42  NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFW 101

Query: 499 FVV-EDGLHD-MLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 539
             +    LH   L  +V   D     + +G   ++L  V   GE
Sbjct: 102 VSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGE 145

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 83.6 bits (207), Expect = 3e-19
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 499
              L+V V+ A +LP SD+ G +DPYV + +   KK  ++ KT V     N ++N+ F F
Sbjct: 29  TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 88

Query: 500 VVE-DGLHDM-LIAEVWDHDTFGK-DYMGRCIL 529
            +  + L ++ +   V D +   + + +GR +L
Sbjct: 89  DIPCESLEEISVEFLVLDSERGSRNEVIGRLVL 121

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 315
            TL V +++A+ L   D+ G SDPY  + +    ++  K KT       N ++NE F F 
Sbjct: 30  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89

Query: 316 VEDE--STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 364
           +  E      +   + D E    +E+IG  ++ L     G     W ++  
Sbjct: 90  IPCESLEEISVEFLVLDSERGSRNEVIG--RLVLGATAEGSGGGHWKEICD 138

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 258 GTLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 316
               V + +A+GL   D     SDPY  + + P  +   K++ +   L+P ++E F F  
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 317 ---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK-DVWLKLVK 364
                     L   I   +     ++IG   + L  +E  + K  +  +++ 
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 443 RGVLSVTVILAENLPASDLMGK-ADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDF- 499
           R    V +  A  LPA D     +DPY+ +T+  + + + KTRV+   L+P +++TF F 
Sbjct: 21  RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80

Query: 500 -VVEDGLHDM-LIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 539
            +    + ++ L   +   D F + D +G  ++ L+ + L   
Sbjct: 81  GIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEG 123

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 82.1 bits (203), Expect = 1e-18
 Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 258 GTLEVKLVQAKGL-------TNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNE 310
             L V++++A+ L        ++  +  S+PY  + + P  + +K++        P++ E
Sbjct: 26  NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85

Query: 311 HFEFIV--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
            + F +   +   + L++ + D +      +IG   V LCE++  K    W  L
Sbjct: 86  RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 79.0 bits (195), Expect = 1e-17
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 443 RGVLSVTVILAENLPA-------SDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPI 492
              L+V VI A +LP           M  ++PYV + +   +K+    +T V      P+
Sbjct: 25  HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKN--SKQTGVKRKTQKPV 82

Query: 493 WNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL--D 547
           + + + F +   +     L+  V D D F +   +G+  + L  V L         L   
Sbjct: 83  FEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS 142

Query: 548 GTKSG 552
           G  SG
Sbjct: 143 GPSSG 147

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 87.3 bits (215), Expect = 2e-18
 Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 12/120 (10%)

Query: 447 SVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDF-VVEDGL 505
            V+   AE+L         D Y+ +     E   +T VV +  NP W    DF  V    
Sbjct: 397 VVSNFRAEHLWGDYTT-ATDAYLKVFFGGQEF--RTGVVWNNNNPRWTDKMDFENVLLST 453

Query: 506 HDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQP 564
              L  +VWD D     D +G C  +       G +    EL     G++K        P
Sbjct: 454 GGPLRVQVWDADYGWDDDLLGSCDRSPHS----GFHEVTCEL---NHGRVKFSYHAKCLP 506

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 65.3 bits (158), Expect = 2e-11
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 16/140 (11%)

Query: 256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF- 314
            +  L V   +A+ L        +D Y  +F      +  ++  + N+ NP W +  +F 
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTT-ATDAYLKVF---FGGQEFRTGVVWNNNNPRWTDKMDFE 447

Query: 315 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK-----DLDVQ 369
            V   +   L V+++D +     +L+G           G   +V  +L           +
Sbjct: 448 NVLLSTGGPLRVQVWDADYGWDDDLLGSCDR---SPHSG-FHEVTCELNHGRVKFSYHAK 503

Query: 370 RDTKYRGQVHLELLYCPFGM 389
                 G   LE  Y P G+
Sbjct: 504 CLPHLTGGTCLE--YAPQGL 521

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 63.9 bits (155), Expect = 2e-12
 Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 15/125 (12%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPI-WNQTFDFVVEDG 504
           L V +     L      G+AD    +T +       +RV+ +C +   +++TF + V   
Sbjct: 23  LIVHLKTVSELR-----GRADRIAKVTFRGQS--FYSRVLENCEDVADFDETFRWPVASS 75

Query: 505 L--HDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDCFEL----DGTKSGKLKLH 557
           +  +++L  +++++     +  +G   + L +V+ E        L    +      L + 
Sbjct: 76  IDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSME 135

Query: 558 LKWMP 562
           +++  
Sbjct: 136 VRYQA 140

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 61.6 bits (149), Expect = 1e-11
 Identities = 27/144 (18%), Positives = 63/144 (43%), Gaps = 18/144 (12%)

Query: 249 YSELELKPVGT---LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLN 305
           +    L P G+   L V L     L      G++D  A +  R    ++  S+ + N  +
Sbjct: 9   HHSSGLVPRGSHMALIVHLKTVSELR-----GRADRIAKVTFR---GQSFYSRVLENCED 60

Query: 306 PI-WNEHFEFIVED--ESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
              ++E F + V    +  + L ++I++   + S++LIG  ++ L ++    V++  +++
Sbjct: 61  VADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV----VEENRVEV 116

Query: 363 VKDLDVQRDTKYRGQVHLELLYCP 386
              L    +   +  + +E+ Y  
Sbjct: 117 SDTLIDDNNAIIKTSLSMEVRYQA 140

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 64.3 bits (156), Expect = 2e-12
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 503
            +L V V  A+   A +   K + YV L ++     + T  V     P W Q F F +  
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN--VESTTIAVRGS-QPSWEQDFMFEINR 67

Query: 504 GLHDMLIAEVWDHDTFGKDYMGRCILTLTRV 534
            L   L  EVW+        +G   + L  +
Sbjct: 68  -LDLGLTVEVWNKGLIWDTMVGTVWIPLRTI 97

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 51.9 bits (124), Expect = 5e-08
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 15/118 (12%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 317
             L V + +AK    ++   K + Y  L V+ +   T   +       P W + F F + 
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAVRG----SQPSWEQDFMFEIN 66

Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL----EPGKVKDVWLKLVKDLDVQRD 371
                 L V ++ ++G+    ++G   + L  +    E G  +  WL L     +   
Sbjct: 67  RLDL-GLTVEVW-NKGLIWDTMVGTVWIPLRTIRQSNEEGPGE--WLTLDSQAIMADS 120

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 57.7 bits (138), Expect = 6e-09
 Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 9/105 (8%)

Query: 259 TLEVKLVQAKGLTNKDLIGKSDPYAVL-FVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 317
            L++ +++A+ L  K        Y  L     L  +T       +     W EHFEF   
Sbjct: 12  VLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66

Query: 318 DESTQ---HLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVW 359
                   HL            +  +G   V +  L      + W
Sbjct: 67  PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQW 111

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 48.4 bits (114), Expect = 4e-06
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 16/110 (14%)

Query: 432 DASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRV---VNDC 488
           +    RR   +  VL + +I A  LP          Y  L +       +T         
Sbjct: 2   NKDNSRR---VDNVLKLWIIEARELPPKK-----RYYCELCLD-DMLYARTTSKPRSASG 52

Query: 489 LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK----DYMGRCILTLTRV 534
               W + F+F     +  + +    D D   K     Y+G   + +  +
Sbjct: 53  DTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATL 102

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 53.0 bits (126), Expect = 2e-07
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVR----PLPEKTKKSKTI-NNDLNPIWNEHFE 313
            L V+++  + L   +    S     + V          ++++  I NN  NP W+  FE
Sbjct: 498 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 557

Query: 314 FIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
           F V       +   + D +    ++ IG + +    L+ G
Sbjct: 558 FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG 597

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 434 SQKRREVIIRGVLSVTVILAENLPASDLMG--KADPYVVLTM---KKSETRNKTRVV-ND 487
           +  +        L V +I  + LP  +       DP V++ +    +     +T V+ N+
Sbjct: 487 ALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNN 546

Query: 488 CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD 522
             NP W+  F+F V      ++   V D+D+  K+
Sbjct: 547 GFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKN 581

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 12/126 (9%)

Query: 424 TEAIELEKDASQKRREVIIR---------GVLSVTVILAENLPASDLMGKADPYVVLTMK 474
             A E   D  +K+RE   +         G L V VI A  L A    GK++PY  ++M 
Sbjct: 358 KAASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMG 417

Query: 475 KSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTR 533
                  TR + D LNP WN    F ++D   D+L   ++D D F  D ++GR  + + +
Sbjct: 418 SQSYT--TRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAK 475

Query: 534 VILEGE 539
           +  E E
Sbjct: 476 IRTEQE 481

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 27/136 (19%), Positives = 61/136 (44%), Gaps = 9/136 (6%)

Query: 253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 312
           +   +G L V +++A  L      GKS+PY  +    +  ++  ++TI + LNP WN + 
Sbjct: 382 KTSGIGRLMVHVIEATELKACKPNGKSNPYCEI---SMGSQSYTTRTIQDTLNPKWNFNC 438

Query: 313 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRD 371
           +F ++D     L + ++D +     + +G  ++ + ++    + K    + +   +V   
Sbjct: 439 QFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVP-- 496

Query: 372 TKYRGQVHLELLYCPF 387
               G+V +      F
Sbjct: 497 ---TGEVWVRFDLQLF 509

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 43.0 bits (100), Expect = 4e-05
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 7/33 (21%)

Query: 197 EK---KKLDFKLKVVGGDISTIPGLSDSIEATI 226
           EK   KKL   LK+   D  + P L  +I+AT+
Sbjct: 18  EKQALKKLQASLKLYADD--SAPAL--AIKATM 46

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B Length = 799

 Score = 43.8 bits (102), Expect = 1e-04
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 15/115 (13%)

Query: 246 PGDYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-----EKTKKSKTI 300
           P     +++    TL + ++  + L+ +        Y  + +  LP         K    
Sbjct: 666 PFSVDRIDVVVATTLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPS 721

Query: 301 NNDLNPIWNEH-FEFI-VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
            N +NP+W E  F F  +       L V + ++     ++ +G   + +  L  G
Sbjct: 722 TNSINPVWKEEPFVFEKILMPELASLRVAVMEE----GNKFLGHRIIPINALNSG 772

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	569
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.85
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.85
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.84
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.84
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.83
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.83
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.82
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.82
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.82
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.82
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.82
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.81
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.8
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.8
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.79
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.79
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.78
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.78
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.78
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.78
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.78
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.78
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.77
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.77
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.77
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.77
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.77
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.77
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.77
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.77
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.77
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.76
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.75
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.75
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.75
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.75
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.75
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.75
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.75
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.74
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.74
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.74
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.74
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.74
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.73
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.73
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.73
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.73
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.73
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.73
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.73
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.73
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.73
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.73
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.72
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.72
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.72
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.72
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.72
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.71
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.71
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.71
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.71
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.7
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.7
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.69
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.68
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.67
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.65
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.63
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.62
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.62
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.62
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.58
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.57
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.55
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.54
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.52
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.5
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.47
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.46
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.43
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.4
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.37
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.24
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.18
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.1
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.1
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.09
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.06
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.05
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.03
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.03
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.95
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.93
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.84
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	93.26
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	91.11
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	87.16
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	85.53
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	84.48
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	82.44
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	80.25

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=9.3e-35  Score=289.18  Aligned_cols=239  Identities=28%  Similarity=0.461  Sum_probs=203.0

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEEC
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  331 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~  331 (569)
                      ....|.|.|+|++|++|+.+|..|.+||||++++++...+.++|+++++++||+|||+|.|.+...  ....|.|+|||+
T Consensus        15 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~   94 (284)
T 2r83_A           15 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDF   94 (284)
T ss_dssp             ETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEEC
T ss_pred             ECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEEC
Confidence            356799999999999999999889999999999986666789999999999999999999998643  457999999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEecCCCCCcCCCCCCCCChhhHHHHhh
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLT  411 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  411 (569)
                      +.+++|++||++.++|.++..+...+.|++|.....  ......|++.+.+.|.|                         
T Consensus        95 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~--~~~~~~G~i~l~l~~~p-------------------------  147 (284)
T 2r83_A           95 DRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK--EEQEKLGDICFSLRYVP-------------------------  147 (284)
T ss_dssp             CSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSS--CCCCCCCEEEEEEEEET-------------------------
T ss_pred             CCCCCCceeEEEEEcchhcccCCcceeEEEeecccc--ccccccccEEEEEEecC-------------------------
Confidence            999899999999999999988888899999975321  12346799999998864                         


Q ss_pred             cCcccccCCCCCccccccchhhhccccccccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---eeEeecccCCC
Q 008334          412 NGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDC  488 (569)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---~~~~T~~~~~t  488 (569)
                                                    ..+.|.|+|++|++|+..+..|.+||||++++....   .+++|+++++|
T Consensus       148 ------------------------------~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t  197 (284)
T 2r83_A          148 ------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT  197 (284)
T ss_dssp             ------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSC
T ss_pred             ------------------------------cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCC
Confidence                                          237899999999999999989999999999995322   46899999999


Q ss_pred             CCCeeceEEEEEeccCC--CCEEEEEEEECCCCCC-ceeEEEEEecceeee------------cceEeEEEEcCCC
Q 008334          489 LNPIWNQTFDFVVEDGL--HDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL------------EGEYTDCFELDGT  549 (569)
Q Consensus       489 ~nP~w~e~f~f~v~~~~--~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~------------~~~~~~w~~L~~~  549 (569)
                      .||+|||+|.|.+....  ...|.|+|||++..++ ++||++.|+++.+..            +....+||+|.+.
T Consensus       198 ~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          198 LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  273 (284)
T ss_dssp             SSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred             CCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence            99999999999987432  4579999999999875 799999999986321            2345899999864

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=7e-34  Score=284.16  Aligned_cols=239  Identities=30%  Similarity=0.438  Sum_probs=196.5

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD  330 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d  330 (569)
                      +....|.|.|+|++|++|+.+|..|.+||||++++.+.+.+.++|+++++++||+|||+|.|.+...  ....|.|+|||
T Consensus        15 y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d   94 (296)
T 1dqv_A           15 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD   94 (296)
T ss_dssp             CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred             EeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEE
Confidence            3356799999999999999999999999999999976567889999999999999999999998643  34589999999


Q ss_pred             CCCCCCCcceEEEEEE-ccccCC-CceeEEEEEccccccccCCCcceeEEEEEEEEEecCCCCCcCCCCCCCCChhhHHH
Q 008334          331 DEGIQSSELIGCAQVR-LCELEP-GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEK  408 (569)
Q Consensus       331 ~~~~~~d~~iG~~~i~-l~~l~~-~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~  408 (569)
                      ++.+++|++||++.++ +.++.. ......|++|....   ......|+|.+.+.|.|                      
T Consensus        95 ~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~---~~~~~~G~i~vsl~y~~----------------------  149 (296)
T 1dqv_A           95 FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG---SEKADLGELNFSLCYLP----------------------  149 (296)
T ss_dssp             CCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS---SCCSCCCEEEEEEEEET----------------------
T ss_pred             cCCCCCCceEEEEEeccccccccCCccceeeecccccc---ccccccceEEEEEEecc----------------------
Confidence            9999999999999996 444432 33456799986432   23456799999999864                      


Q ss_pred             HhhcCcccccCCCCCccccccchhhhccccccccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeeccc
Q 008334          409 VLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVV  485 (569)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~  485 (569)
                                                       ..+.|.|+|++|++|+..+..|.+||||++++...   ..+++|+++
T Consensus       150 ---------------------------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~  196 (296)
T 1dqv_A          150 ---------------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIK  196 (296)
T ss_dssp             ---------------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCC
T ss_pred             ---------------------------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceeccee
Confidence                                             23789999999999999999999999999999631   257899999


Q ss_pred             CCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCCCC-ceeEEEEEecceeee-------------cceEeEEEEcCCC
Q 008334          486 NDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL-------------EGEYTDCFELDGT  549 (569)
Q Consensus       486 ~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~-------------~~~~~~w~~L~~~  549 (569)
                      +++.||+|||.|.|.+...  ....|.|+|||++..++ ++||++.|++.++..             +....+|++|.+.
T Consensus       197 ~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~  276 (296)
T 1dqv_A          197 KNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE  276 (296)
T ss_dssp             CSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred             cCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence            9999999999999998743  24579999999999876 799999999987643             2234688888654

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.85  E-value=8.8e-21  Score=166.38  Aligned_cols=124  Identities=34%  Similarity=0.595  Sum_probs=110.8

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecC-CCCCCeeccEEEEEEecCCCcEEEEEEEECCC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  333 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~  333 (569)
                      .+.|.|+|+|++|++|+..+..|.+||||+++++   .+.++|++++ ++.||+|||+|.|.+.+ ....|.|+|||++.
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~   82 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDV   82 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS---SCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSS
T ss_pred             CCcEEEEEEEEeccCCCCcccCCCcCceEEEEEC---CccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCC
Confidence            5789999999999999999988999999999997   5678999998 89999999999999986 56689999999999


Q ss_pred             CCCCcceEEEEEEcccc-CCCceeEEEEEccccccccCCCcceeEEEEEEEEEecC
Q 008334          334 IQSSELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG  388 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l-~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~  388 (569)
                      +++|++||++.+++.++ ..+.....|++|.      ..++..|+|+++++|.|.+
T Consensus        83 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~------~~~~~~G~i~l~l~~~p~~  132 (136)
T 1wfj_A           83 GTEDDAVGEATIPLEPVFVEGSIPPTAYNVV------KDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHSEEEEEEEEEE------ETTEEEEEEEEEEEEEECC
T ss_pred             CCCCceEEEEEEEHHHhccCCCCCcEEEEee------cCCccCEEEEEEEEEEeCC
Confidence            98999999999999999 4566678999986      2457899999999999854

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=2.2e-20  Score=164.67  Aligned_cols=128  Identities=29%  Similarity=0.475  Sum_probs=109.9

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC---CCcEEEEEEEEC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDD  331 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~v~d~  331 (569)
                      ...|.|.|+|++|++|+..+. |.+||||++++.   .++++|++++++.||+|||+|.|.+...   ....|.|+|||+
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~   79 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFK---DEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF   79 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECS---SCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC---CEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence            356999999999999999998 999999999997   5789999999999999999999999753   457899999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEec
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  387 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~  387 (569)
                      +..++|++||++.+++.++..+...+.|+++.+-.. .......|+|++++.|.|.
T Consensus        80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~-~~~~~~~G~l~l~~~~~p~  134 (140)
T 2dmh_A           80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN-EKGQDTGATIDLVIGYDPP  134 (140)
T ss_dssp             TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEEC-TTCCEEEEEEEEEEEECCC
T ss_pred             CCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccC-CCCCCCCCEEEEEEEEECC
Confidence            999999999999999999988888889988322111 1233567999999999873

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.84  E-value=3.6e-20  Score=165.97  Aligned_cols=128  Identities=25%  Similarity=0.485  Sum_probs=103.6

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEEC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  331 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~  331 (569)
                      ...|.|+|+|++|++|+..+..|.+||||++++.+...   +.++|++++++.||+|||+|.|.+... ...|.|+|||+
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d~   95 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFDE   95 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEEC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEEC
Confidence            57899999999999999999889999999999984332   578999999999999999999999754 56899999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCcee------EEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVK------DVWLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~------~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      +..++|++||++.+++.++..+...      ..|++|.+..   ...+..|+|+++++|.|
T Consensus        96 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           96 NRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS---HKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             CSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS---TTCCCCSEEEEEEEECC
T ss_pred             CCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc---CCCCcceEEEEEEEEeC
Confidence            9999999999999999999765432      5899996532   23467899999999975

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=2.7e-20  Score=160.92  Aligned_cols=120  Identities=27%  Similarity=0.525  Sum_probs=104.9

Q ss_pred             cEEEEEEEEEeecccc---CCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCC
Q 008334          257 VGTLEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  333 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~  333 (569)
                      .|.|.|+|++|++|+.   .+..|.+||||++++++.+.++++|++++++.||+|||+|.|.+.......|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            5899999999999998   4667899999999998544578999999999999999999999976667799999999998


Q ss_pred             CCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          334 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                      . +|++||++.++|.++..+...+.|++|.+        ...|.|++.++..
T Consensus        82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~--------~~~g~i~~~le~~  124 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQ--------VTEMVLEMSLEVA  124 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETT--------TEEEEEEEEEECC
T ss_pred             C-CCceeEEEEEEHHHccCCCcEEEEEEcCC--------CceEEEEEEEEeC
Confidence            7 48999999999999999999999999842        4567888877654

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=2.1e-20  Score=161.57  Aligned_cols=120  Identities=23%  Similarity=0.454  Sum_probs=106.6

Q ss_pred             ceEEEEEEEEeEcCCCC---CCCCCCCcEEEEEEeCC-CeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCC
Q 008334          443 RGVLSVTVILAENLPAS---DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT  518 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~---~~~g~~dpyv~v~l~~~-~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~  518 (569)
                      .+.|.|+|++|++|+..   +..|.+||||++++++. ..+++|++++++.||+|||+|.|.+.......|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            48899999999999984   56688999999999753 368899999999999999999999976667899999999998


Q ss_pred             CCCceeEEEEEecceeeecceEeEEEEcCCCCCeEEEEEEEEee
Q 008334          519 FGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMP  562 (569)
Q Consensus       519 ~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~p  562 (569)
                      .++++||++.++|.++..+.....|++|.+.+.|.|+++++..|
T Consensus        82 ~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~~~  125 (126)
T 1rlw_A           82 VMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVAS  125 (126)
T ss_dssp             SCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCC
T ss_pred             CCCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEeCC
Confidence            87789999999999998878889999999988888888887655

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=3.4e-20  Score=161.95  Aligned_cols=125  Identities=28%  Similarity=0.526  Sum_probs=109.1

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECC
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE  332 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~  332 (569)
                      +..+.|.|.|+|++|++|+..+..|.+||||+++++   .+.++|++++++.||+|||+|.|.+.+. .+.|.|+|||++
T Consensus         8 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d   83 (133)
T 2ep6_A            8 DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELG---NDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDED   83 (133)
T ss_dssp             SCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET---TEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEE
T ss_pred             ccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEEC---CEEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECC
Confidence            447889999999999999999989999999999997   5688999999999999999999999864 568999999999


Q ss_pred             CCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334          333 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       333 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      ..++|++||++.+++.++..+.  ..|++|....   ..+...|+|+++++|..
T Consensus        84 ~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~---~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           84 GDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKD---LEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             TTEEEEECCBCEEEGGGCCSSC--CEECCCBCSC---TTSCCSSEEEEEEEEEE
T ss_pred             CCCCCCeeEEEEEEHHHccCCC--ceEEEeecCC---CCCccceEEEEEEEEEe
Confidence            9888999999999999997654  5899986432   23467899999999863

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.82  E-value=1.9e-19  Score=160.19  Aligned_cols=121  Identities=30%  Similarity=0.559  Sum_probs=106.1

Q ss_pred             ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC-
Q 008334          256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI-  334 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~-  334 (569)
                      ..|.|+|+|++|++|+..|..|.+||||+++++   .+.++|++++++.||+|||+|.|.+... .+.|.|+|||++.. 
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~   90 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVG---KTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDI   90 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEET---TEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSH
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC---CEEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCc
Confidence            469999999999999999999999999999996   6789999999999999999999999765 46899999999985 


Q ss_pred             ----------CCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          335 ----------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       335 ----------~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                                ++|++||++.+++.++  ....+.|++|.+..   ......|+|+++++|.
T Consensus        91 ~~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~---~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           91 KSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRT---DKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSS---TTCCCCCEEEEEEEEE
T ss_pred             cccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCC---CCCCCceEEEEEEEEE
Confidence                      7899999999999998  34568999997532   2345789999999985

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.82  E-value=2.2e-20  Score=166.17  Aligned_cols=117  Identities=22%  Similarity=0.335  Sum_probs=101.2

Q ss_pred             CccEEEEEEEEEeeccccCCC----------CCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEE
Q 008334          255 KPVGTLEVKLVQAKGLTNKDL----------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHL  324 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~----------~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L  324 (569)
                      ...|.|+|+|++|++|+++|.          .|.+||||+++++  +.+..+|+++++|+||+|||+|.|.+.+  .+.|
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~--~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L  101 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD--QVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHL  101 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEEC--CEeeEEeeecCCCCCCccCcEEEEEcCC--CCEE
Confidence            467999999999999998873          2579999999997  2345799999999999999999999975  4589


Q ss_pred             EEEEEECCCCCCCcceEEEEEEccccCCC----ceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          325 VVRIYDDEGIQSSELIGCAQVRLCELEPG----KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       325 ~i~v~d~~~~~~d~~iG~~~i~l~~l~~~----~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                      .|+|||++.+++|++||++.+++.++..+    ...+.|++|.          ..|.|++.++|.
T Consensus       102 ~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~----------~~G~i~l~l~~~  156 (157)
T 2fk9_A          102 ELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE----------PEGKVFVVITLT  156 (157)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB----------SSCEEEEEEEEC
T ss_pred             EEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC----------CCcEEEEEEEEE
Confidence            99999999999999999999999998744    6789999984          279999999873

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.82  E-value=8.5e-20  Score=162.41  Aligned_cols=116  Identities=19%  Similarity=0.341  Sum_probs=101.6

Q ss_pred             ccceEEEEEEEEeEcCCCCCC----------CCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEE
Q 008334          441 IIRGVLSVTVILAENLPASDL----------MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLI  510 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~~----------~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~  510 (569)
                      ...|.|+|+|.+|++|+.+|.          .|.+||||++++++ ....+|+++++|+||+|||+|+|.+.+  ...|.
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~-~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~  102 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ-VRVGQTSTKQKTNKPTYNEEFCANVTD--GGHLE  102 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETT-EEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECC-EeeEEeeecCCCCCCccCcEEEEEcCC--CCEEE
Confidence            467999999999999998873          36799999999975 345799999999999999999999975  46899


Q ss_pred             EEEEECCCCCC-ceeEEEEEecceeeec----ceEeEEEEcCCCCCeEEEEEEEEe
Q 008334          511 AEVWDHDTFGK-DYMGRCILTLTRVILE----GEYTDCFELDGTKSGKLKLHLKWM  561 (569)
Q Consensus       511 i~V~d~~~~~~-d~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~G~i~l~~~~~  561 (569)
                      |+|||++..++ |+||++.|+++++..+    ...+.||+|+.  .|+|+|+++|.
T Consensus       103 ~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--~G~i~l~l~~~  156 (157)
T 2fk9_A          103 LAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVITLT  156 (157)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--SCEEEEEEEEC
T ss_pred             EEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--CcEEEEEEEEE
Confidence            99999998875 7999999999999865    56799999975  79999999985

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=2.3e-19  Score=158.15  Aligned_cols=121  Identities=26%  Similarity=0.450  Sum_probs=106.5

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccC---CCCEEEEEEEECCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDT  518 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~---~~~~l~i~V~d~~~  518 (569)
                      ..|.|.|+|++|++|+..+. |.+||||++++++  .+++|++++++.||+|||+|.|.+..+   ....|.|+|||++.
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~   81 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKD--EKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET   81 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSS--CEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECC--EeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC
Confidence            46899999999999999988 9999999999975  578999999999999999999999754   45789999999998


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEE---cCCC----CCeEEEEEEEEeecCC
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFE---LDGT----KSGKLKLHLKWMPQPI  565 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~---L~~~----~~G~i~l~~~~~p~~~  565 (569)
                      .++ ++||++.|++.++..+.....|++   |.+.    ..|+|+++++|.|.+.
T Consensus        82 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~~  136 (140)
T 2dmh_A           82 IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPPSG  136 (140)
T ss_dssp             SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCCBS
T ss_pred             CCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECCCC
Confidence            865 699999999999988777788987   6443    3599999999999764

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.82  E-value=2.3e-19  Score=164.52  Aligned_cols=129  Identities=25%  Similarity=0.482  Sum_probs=102.0

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEEC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD  331 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~  331 (569)
                      ...|.|+|+|++|++|+.++..|.+||||++++.....   ++++|+++++++||+|||+|.|.+... ...|.|+|||+
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d~   83 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFDE   83 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEEC
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEEC
Confidence            46799999999999999999899999999999984332   568999999999999999999999753 46899999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCcee-E-----EEEEccccccccCCCcceeEEEEEEEEEec
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVK-D-----VWLKLVKDLDVQRDTKYRGQVHLELLYCPF  387 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~-~-----~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~  387 (569)
                      +.+++|++||++.++|.++..+... +     .|++|....   ..++..|+|++++.|.|.
T Consensus        84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS---HKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS---TTCCCCSEEEEEEEECC-
T ss_pred             CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC---CCCccCEEEEEEEEEEeC
Confidence            9999999999999999999766443 2     799997532   245578999999999985

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.81  E-value=1.3e-19  Score=158.89  Aligned_cols=117  Identities=20%  Similarity=0.339  Sum_probs=100.9

Q ss_pred             ccEEEEEEEEEeeccccCCCCCC-----------CCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEE
Q 008334          256 PVGTLEVKLVQAKGLTNKDLIGK-----------SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHL  324 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~d~~g~-----------~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L  324 (569)
                      ..|.|+|+|++|++|++.|..++           +||||+++++  +....+|+++.++.||+|||+|.|.+.+.  +.|
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~--~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L   79 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD--DSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKI   79 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEEC--CeEeeeeeEECCCcCCccCCEEEEEecCC--CEE
Confidence            36999999999999998875544           9999999996  23457899999999999999999999764  689


Q ss_pred             EEEEEECCCCCCCcceEEEEEEccccCCC--ceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334          325 VVRIYDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       325 ~i~v~d~~~~~~d~~iG~~~i~l~~l~~~--~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      .|+|||++..++|++||++.+++.++..+  ...+.|++|.          +.|+|++.++|.+
T Consensus        80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~i~l~l~~~~  133 (136)
T 1gmi_A           80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE----------PEGKVYVIIDLSG  133 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB----------SSCEEEEEEEEEE
T ss_pred             EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC----------CCeEEEEEEEEEe
Confidence            99999999999999999999999999764  3458999873          3799999999975

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.80  E-value=4.5e-19  Score=155.42  Aligned_cols=120  Identities=28%  Similarity=0.480  Sum_probs=105.7

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccC-CCCCCeeceEEEEEeccCCCCEEEEEEEECCCCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  520 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~  520 (569)
                      ..+.|.|+|++|++|+..+..|.+||||++++++  .+++|++++ ++.||+|||+|.|.+.+ ....|.|+|||++..+
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~~   84 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--QDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVGT   84 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS--CEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSCT
T ss_pred             CcEEEEEEEEeccCCCCcccCCCcCceEEEEECC--ccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCCC
Confidence            5699999999999999999889999999999976  467999998 89999999999999986 5678999999999886


Q ss_pred             C-ceeEEEEEecceeeecc-eEeEEEEcC--CCCCeEEEEEEEEeecC
Q 008334          521 K-DYMGRCILTLTRVILEG-EYTDCFELD--GTKSGKLKLHLKWMPQP  564 (569)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~-~~~~w~~L~--~~~~G~i~l~~~~~p~~  564 (569)
                      + ++||++.|+|.++...+ ....||+|.  +...|+|+++++|.|..
T Consensus        85 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~~  132 (136)
T 1wfj_A           85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             CCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeCC
Confidence            5 79999999999985443 458899985  34589999999999964

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.80  E-value=1e-18  Score=156.36  Aligned_cols=121  Identities=28%  Similarity=0.494  Sum_probs=98.7

Q ss_pred             ccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC----CeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEEC
Q 008334          441 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDH  516 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~----~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~  516 (569)
                      ...+.|+|+|++|++|+..+..|.+||||+++++..    ..+++|++++++.||+|||+|.|.+.. ....|.|+|||+
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~l~~~V~d~   95 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP-QQHRLLFEVFDE   95 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT-TTCEEEEEEEEC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC-CCCEEEEEEEEC
Confidence            457999999999999999998899999999999742    257899999999999999999999985 457899999999


Q ss_pred             CCCCC-ceeEEEEEecceeeecceE------eEEEEcCC-----CCCeEEEEEEEEee
Q 008334          517 DTFGK-DYMGRCILTLTRVILEGEY------TDCFELDG-----TKSGKLKLHLKWMP  562 (569)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~------~~w~~L~~-----~~~G~i~l~~~~~p  562 (569)
                      +..++ ++||++.|++.++......      .+||+|..     ...|+|+++++|.|
T Consensus        96 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           96 NRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             CSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             CCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            98865 6999999999998776532      59999964     34799999999987

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.79  E-value=2.7e-18  Score=152.80  Aligned_cols=115  Identities=31%  Similarity=0.607  Sum_probs=101.8

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCC--
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF--  519 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~--  519 (569)
                      ..|.|+|+|++|++|+..+..|.+||||++++++  .+++|+++++|.||.|||+|.|.+..+ .+.|.|+|||++..  
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~~   91 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK--TKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIK   91 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT--EEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSHH
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECC--EEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCcc
Confidence            4699999999999999999999999999999965  788999999999999999999999865 47899999999985  


Q ss_pred             ---------C-CceeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEEe
Q 008334          520 ---------G-KDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKWM  561 (569)
Q Consensus       520 ---------~-~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~  561 (569)
                               + +++||++.+++.++  .....+||+|...     ..|+|+|+++|.
T Consensus        92 ~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           92 SRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             ccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                     4 47999999999998  4556899999742     469999999985

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.79  E-value=7.5e-19  Score=153.93  Aligned_cols=117  Identities=20%  Similarity=0.438  Sum_probs=100.9

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCC-----------CCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEE
Q 008334          442 IRGVLSVTVILAENLPASDLMGK-----------ADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLI  510 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~-----------~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~  510 (569)
                      ..|.|+|+|++|++|+..+..+.           +||||++++++ ....+|+++++|+||+|||+|+|.+.+.  ..|.
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~-~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~   80 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD-SRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIE   80 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT-EEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECC-eEeeeeeEECCCcCCccCCEEEEEecCC--CEEE
Confidence            46999999999999998775443           99999999964 3557899999999999999999999864  7899


Q ss_pred             EEEEECCCCCC-ceeEEEEEecceeeecc--eEeEEEEcCCCCCeEEEEEEEEeec
Q 008334          511 AEVWDHDTFGK-DYMGRCILTLTRVILEG--EYTDCFELDGTKSGKLKLHLKWMPQ  563 (569)
Q Consensus       511 i~V~d~~~~~~-d~lG~~~i~l~~l~~~~--~~~~w~~L~~~~~G~i~l~~~~~p~  563 (569)
                      |+|||++..++ ++||++.+++.++..++  ..+.|++|+.  .|+|+++++|.+.
T Consensus        81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~i~l~l~~~~~  134 (136)
T 1gmi_A           81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEEE
T ss_pred             EEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC--CeEEEEEEEEEec
Confidence            99999998875 69999999999988753  4589999975  7999999999864

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.78  E-value=1.1e-18  Score=151.99  Aligned_cols=124  Identities=22%  Similarity=0.430  Sum_probs=102.0

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCC
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  336 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~  336 (569)
                      ...|+|+|++|++|.+.|..|.+||||++++.+. .+.++|+++++++||+|||+|.|.+....  .|.|+|||++..++
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~l~~~v~d~d~~~~   80 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS-GQCHSTDTVKNTLDPKWNQHYDLYVGKTD--SITISVWNHKKIHK   80 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT-CCEEECCCCSSCSSCEEEEEEEEEEETTC--CEEEEEEEGGGTTS
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC-CceEECCccCCCCCCCccCEEEEEeCCCC--EEEEEEEECCCCCC
Confidence            4689999999999999999999999999999732 47899999999999999999999997643  59999999998866


Q ss_pred             ---CcceEEEEEEcccc-CCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          337 ---SELIGCAQVRLCEL-EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       337 ---d~~iG~~~i~l~~l-~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                         |++||++.+++.++ ........|++|..... ....+..|+|++++++
T Consensus        81 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~-~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           81 KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNP-SDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSST-TCCCCCCSEEEEEEEE
T ss_pred             CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCC-CCCCceeEEEEEEEEc
Confidence               89999999999988 22333457888865321 2234568999999875

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.78  E-value=7.7e-19  Score=155.32  Aligned_cols=111  Identities=31%  Similarity=0.488  Sum_probs=100.2

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEEC
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  331 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~  331 (569)
                      ....|.|.|+|++|++|+..+..+.+||||++++.+.+.++++|++++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus        30 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  109 (143)
T 3f04_A           30 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDF  109 (143)
T ss_dssp             ETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEEC
T ss_pred             eCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeC
Confidence            357799999999999999999889999999999976667789999999999999999999998633  457899999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      +..++|++||++.++|.++..+...+.|++|.+
T Consensus       110 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          110 DRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             CSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            999999999999999999998888999999853

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.78  E-value=9.3e-19  Score=152.74  Aligned_cols=117  Identities=32%  Similarity=0.562  Sum_probs=103.3

Q ss_pred             ccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCC
Q 008334          441 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  520 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~  520 (569)
                      ...+.|.|+|++|++|+..+..|.+||||++++++  .+++|++++++.||.|||+|.|.+.+. ...|.|+|||++..+
T Consensus        10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d~~~   86 (133)
T 2ep6_A           10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN--DRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDK   86 (133)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT--EEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTE
T ss_pred             CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC--EEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECCCCC
Confidence            46799999999999999999899999999999976  678999999999999999999999864 578999999999886


Q ss_pred             C-ceeEEEEEecceeeecceEeEEEEcCC-----CCCeEEEEEEEEee
Q 008334          521 K-DYMGRCILTLTRVILEGEYTDCFELDG-----TKSGKLKLHLKWMP  562 (569)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~~~~~p  562 (569)
                      + ++||++.+++.++..+.  .+||+|..     ...|+|+|+++|..
T Consensus        87 ~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           87 PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             CCCeeEEEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEEEe
Confidence            5 79999999999986543  68999964     35799999999864

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.78  E-value=1.1e-18  Score=155.88  Aligned_cols=111  Identities=31%  Similarity=0.488  Sum_probs=100.0

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEEC
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  331 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~  331 (569)
                      ....+.|.|+|++|++|+..+..+.+||||++++.+.+.+.++|++++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus        38 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  117 (152)
T 1rsy_A           38 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDF  117 (152)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEEC
T ss_pred             eCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEEC
Confidence            356799999999999999999889999999999986666789999999999999999999988643  457899999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      +.+++|++||++.+++.++..+...+.|++|.+
T Consensus       118 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          118 DRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             CSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            999899999999999999988888899999853

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=1e-18  Score=154.16  Aligned_cols=110  Identities=26%  Similarity=0.459  Sum_probs=98.6

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEec---CCCcEEEEEEEEC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYDD  331 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~i~v~d~  331 (569)
                      ...+.|+|+|++|++|+..+..|.+||||++++.+.+.+.++|++++++.||+|||+|.|.+..   .....|.|+|||+
T Consensus        23 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  102 (141)
T 2d8k_A           23 FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDY  102 (141)
T ss_dssp             SSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEEC
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEEC
Confidence            5679999999999999999988999999999998655678999999999999999999998532   2356899999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      +.+++|++||++.+++.++..+...+.|++|.+
T Consensus       103 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  135 (141)
T 2d8k_A          103 DRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP  135 (141)
T ss_dssp             CSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred             CCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence            999899999999999999988888899999964

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.78  E-value=1.9e-18  Score=150.86  Aligned_cols=109  Identities=20%  Similarity=0.352  Sum_probs=95.9

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecC--CCCeEEeeecCCCCCCeeccEEEEE-EecC--CCcEEEEEEE
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRIY  329 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~wne~f~f~-v~~~--~~~~L~i~v~  329 (569)
                      ...|.|.|+|++|++|+. +..|.+||||++++.+.  ...+++|+++++++||+|||+|.|. +...  ....|.|+||
T Consensus        17 ~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~   95 (134)
T 2b3r_A           17 YRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVL   95 (134)
T ss_dssp             EETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred             ecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence            356899999999999997 77889999999999653  3467899999999999999999999 7532  4568999999


Q ss_pred             ECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      |++..++|++||++.+++.++..+...+.|++|.+
T Consensus        96 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  130 (134)
T 2b3r_A           96 SAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA  130 (134)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred             ECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence            99999999999999999999988888899999963

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.77  E-value=5.5e-18  Score=155.34  Aligned_cols=122  Identities=28%  Similarity=0.485  Sum_probs=97.9

Q ss_pred             ccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC----eeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEEC
Q 008334          441 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE----TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDH  516 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~----~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~  516 (569)
                      ...|.|+|+|++|++|+..+..|.+||||++++++..    .+++|++++++.||.|||.|.|.+.. ....|.|+|||+
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~-~~~~L~~~V~d~   83 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP-QRHRILFEVFDE   83 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT-TTCEEEEEEEEC
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC-CCCEEEEEEEEC
Confidence            3569999999999999999989999999999997532    57899999999999999999999984 457899999999


Q ss_pred             CCCCC-ceeEEEEEecceeeecceE-e-----EEEEcCCC-----CCeEEEEEEEEeec
Q 008334          517 DTFGK-DYMGRCILTLTRVILEGEY-T-----DCFELDGT-----KSGKLKLHLKWMPQ  563 (569)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~-~-----~w~~L~~~-----~~G~i~l~~~~~p~  563 (569)
                      +..++ ++||++.|+|.++...... .     +||+|...     ..|+|+|++.|.|.
T Consensus        84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            98865 7999999999999876443 2     89999743     37999999999986

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.77  E-value=4.2e-18  Score=155.00  Aligned_cols=125  Identities=25%  Similarity=0.332  Sum_probs=103.8

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  334 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~  334 (569)
                      ...+.|.|+|++|++|++.+..+.+||||+++++   .++++|+++++++||+|||+|.|.+..  .+.|.|+|||++.+
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~---~~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~  107 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTL  107 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSS
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEEC---CEEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCC
Confidence            4578999999999999944444559999999997   488999999999999999999999853  67899999999999


Q ss_pred             CCCcceEEEEEEccccCCC---ce--eEEEEEccccccccCCCcceeEEEEEEEEEec
Q 008334          335 QSSELIGCAQVRLCELEPG---KV--KDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  387 (569)
Q Consensus       335 ~~d~~iG~~~i~l~~l~~~---~~--~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~  387 (569)
                      ++|++||++.+++.++..+   ..  ...|++|...   ....+..|+|.+.+.|.+.
T Consensus       108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~---~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD---KEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES---SCTTSEEEEEEEEEESEEC
T ss_pred             CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC---CCCCcccEEEEEEEeeeec
Confidence            9999999999999988532   22  2679999754   1244678999999999975

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.77  E-value=3.3e-19  Score=159.32  Aligned_cols=110  Identities=16%  Similarity=0.207  Sum_probs=96.1

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC---CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  328 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v  328 (569)
                      ....|.|+|+|++|+||+++|..|.+||||++++.+..   ..++||+++++|+||+|||+|.|.+...  ....|.|+|
T Consensus        39 ~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V  118 (155)
T 2z0u_A           39 DEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDV  118 (155)
T ss_dssp             ETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEE
T ss_pred             cCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEE
Confidence            35679999999999999999999999999999998522   2379999999999999999999998643  356899999


Q ss_pred             EECCCCCCCcceEEEEEEccccCC-CceeEEEEEcc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEP-GKVKDVWLKLV  363 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~-~~~~~~~~~L~  363 (569)
                      ||++..+++++||++.+++.++.. +.....|++|.
T Consensus       119 ~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          119 CTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             EEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             EECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            999999999999999999999953 66778999985

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=5.8e-18  Score=151.25  Aligned_cols=107  Identities=30%  Similarity=0.477  Sum_probs=94.2

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  519 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~  519 (569)
                      .+.|.|+|++|++|+..+..+.+||||++++.. ...+++|++++++.||+|||+|.|.+...  ....|.|+|||++..
T Consensus        41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~  120 (152)
T 1rsy_A           41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  120 (152)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCC
Confidence            488999999999999999899999999999963 23578999999999999999999988632  457899999999988


Q ss_pred             CC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334          520 GK-DYMGRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      ++ ++||++.+++.++..+....+||+|.+.
T Consensus       121 ~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A          121 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             SCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             CCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            65 7999999999999877778999999764

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=3.2e-18  Score=150.91  Aligned_cols=108  Identities=31%  Similarity=0.471  Sum_probs=93.8

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEecc---CCCCEEEEEEEECCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDHDT  518 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~---~~~~~l~i~V~d~~~  518 (569)
                      .+.|.|+|++|++|+..+..|.+||||++++.. ...+++|++++++.||+|||+|.|.+..   .....|.|+|||++.
T Consensus        25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~  104 (141)
T 2d8k_A           25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR  104 (141)
T ss_dssp             SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC
Confidence            478999999999999999899999999999963 2357899999999999999999998531   235789999999998


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEEcCCCC
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFELDGTK  550 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~  550 (569)
                      .++ ++||++.+++.++..+.....||+|.+..
T Consensus       105 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  137 (141)
T 2d8k_A          105 FSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG  137 (141)
T ss_dssp             SSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred             CCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence            865 79999999999998877789999997654

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=4.4e-18  Score=147.60  Aligned_cols=104  Identities=25%  Similarity=0.497  Sum_probs=86.9

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEec---cCCCCEEEEEEEEC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDH  516 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~l~i~V~d~  516 (569)
                      .+.|.|+|++|++|+..+..|.+||||++++..   ...+++|+++++|.||+|||+|.|.+.   +.....|.|+|||+
T Consensus        17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~   96 (129)
T 2bwq_A           17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   96 (129)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence            488999999999999999899999999999942   246889999999999999999999953   22457899999999


Q ss_pred             CCCC---CceeEEEEEecceeeecceEeEEEEcC
Q 008334          517 DTFG---KDYMGRCILTLTRVILEGEYTDCFELD  547 (569)
Q Consensus       517 ~~~~---~d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (569)
                      +..+   +++||++.++|.++...+ ..+||+|+
T Consensus        97 d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           97 ARVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             -------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             CcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            9886   569999999999987755 78999985

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.77  E-value=3.4e-18  Score=152.10  Aligned_cols=108  Identities=23%  Similarity=0.503  Sum_probs=93.5

Q ss_pred             ceEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEEC
Q 008334          443 RGVLSVTVILAENLPASD-LMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  516 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~-~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~  516 (569)
                      .+.|.|+|++|++|+..+ ..|.+||||++++...   ..+++|+++++|.||+|||+|.|.+...  ....|.|+|||+
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~  101 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH  101 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence            488999999999999887 6789999999999742   2478999999999999999999998753  345799999999


Q ss_pred             CCCCC-ceeEEEEEecceeeecceEeEEEEcCCCC
Q 008334          517 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK  550 (569)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~  550 (569)
                      +..++ ++||++.++|.++..+....+||+|.++.
T Consensus       102 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A          102 GRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             CGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred             CCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence            98876 79999999999998777778999998753

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.77  E-value=5.1e-18  Score=147.80  Aligned_cols=117  Identities=23%  Similarity=0.384  Sum_probs=99.8

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCC--
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG--  520 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~--  520 (569)
                      ...|+|+|++|++|+..+..|.+||||++++++...+++|+++++|+||+|||+|.|.+.+.  +.|.|+|||++..+  
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~~~   81 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIHKK   81 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTTSS
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCCCC
Confidence            47799999999999999999999999999997545789999999999999999999999864  34999999999876  


Q ss_pred             --CceeEEEEEecceeeec-ceEeEEEEcCCC-------CCeEEEEEEEEe
Q 008334          521 --KDYMGRCILTLTRVILE-GEYTDCFELDGT-------KSGKLKLHLKWM  561 (569)
Q Consensus       521 --~d~lG~~~i~l~~l~~~-~~~~~w~~L~~~-------~~G~i~l~~~~~  561 (569)
                        +++||++.+++.++... ....+|++|...       ..|+|+++++++
T Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~r  132 (132)
T 3pyc_A           82 QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQTR  132 (132)
T ss_dssp             TTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEEC
T ss_pred             CCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEcC
Confidence              47999999999988433 344688998643       279999998863

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.77  E-value=2.2e-18  Score=151.96  Aligned_cols=109  Identities=26%  Similarity=0.505  Sum_probs=93.2

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEe-c--cCCCCEEEEEEEEC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVV-E--DGLHDMLIAEVWDH  516 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v-~--~~~~~~l~i~V~d~  516 (569)
                      .+.|.|+|++|++|+..+..|.+||||++++..   ...+++|+++++|.||+|||+|.|.+ .  +.....|.|+|||+
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~   99 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   99 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred             CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence            478999999999999999899999999999842   24678999999999999999999995 3  22357899999999


Q ss_pred             CCCC---CceeEEEEEecceeeecceEeEEEEcCCCCCe
Q 008334          517 DTFG---KDYMGRCILTLTRVILEGEYTDCFELDGTKSG  552 (569)
Q Consensus       517 ~~~~---~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G  552 (569)
                      +..+   +++||++.|+|.++.... ..+||+|.+...|
T Consensus       100 d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~g  137 (141)
T 1v27_A          100 ARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSG  137 (141)
T ss_dssp             CSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSSC
T ss_pred             CCCcCCCCceEEEEEEEccccCCCC-CCceEECcccccC
Confidence            9886   469999999999987655 7899999876554

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.76  E-value=2.1e-18  Score=154.05  Aligned_cols=105  Identities=15%  Similarity=0.146  Sum_probs=91.4

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC----CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEEC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH  516 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~----~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~  516 (569)
                      .+.|+|+|++|++|+.++.+|.+||||++++...    ..++||+++++|+||+|||+|.|.+...  ....|.|+|||+
T Consensus        42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~  121 (155)
T 2z0u_A           42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTT  121 (155)
T ss_dssp             TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEE
T ss_pred             CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEEC
Confidence            4889999999999999999999999999999641    2378999999999999999999998642  356899999999


Q ss_pred             CCCCC-ceeEEEEEecceeee-cceEeEEEEcC
Q 008334          517 DTFGK-DYMGRCILTLTRVIL-EGEYTDCFELD  547 (569)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~-~~~~~~w~~L~  547 (569)
                      +..++ ++||++.|+|.++.. .....+||+|.
T Consensus       122 d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          122 DRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             CTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             CCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            99876 799999999999853 45678999985

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.75  E-value=7.2e-18  Score=147.15  Aligned_cols=111  Identities=18%  Similarity=0.270  Sum_probs=93.6

Q ss_pred             ccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEE-ecc--CCCCEEEEEEE
Q 008334          441 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFV-VED--GLHDMLIAEVW  514 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~-v~~--~~~~~l~i~V~  514 (569)
                      ...+.|.|+|++|++|+. +..|.+||||++++..   ...+++|+++++|+||+|||+|.|. +..  .....|.|+||
T Consensus        17 ~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~   95 (134)
T 2b3r_A           17 YRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVL   95 (134)
T ss_dssp             EETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred             ecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence            456899999999999997 7788999999999943   2357899999999999999999999 763  24578999999


Q ss_pred             ECCCCCC-ceeEEEEEecceeeecceEeEEEEcCCCCCe
Q 008334          515 DHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSG  552 (569)
Q Consensus       515 d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G  552 (569)
                      |++..++ ++||++.++|.++..+....+||+|.+.+.|
T Consensus        96 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~g  134 (134)
T 2b3r_A           96 SAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATYL  134 (134)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC----
T ss_pred             ECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCccCC
Confidence            9998875 6999999999999887778999999987654

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.75  E-value=2.4e-18  Score=151.97  Aligned_cols=107  Identities=27%  Similarity=0.507  Sum_probs=93.1

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC------------eeEeecccCCCCCCeeceEEEEE-ec--cCCCCE
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSE------------TRNKTRVVNDCLNPIWNQTFDFV-VE--DGLHDM  508 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~------------~~~~T~~~~~t~nP~w~e~f~f~-v~--~~~~~~  508 (569)
                      +.|.|+|++|++|+..+..|.+||||++++.+..            .+++|+++++|.||+|||+|.|. +.  +.....
T Consensus        18 ~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~   97 (142)
T 1rh8_A           18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKT   97 (142)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCE
T ss_pred             CEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCE
Confidence            7899999999999999989999999999997532            35799999999999999999997 54  224678


Q ss_pred             EEEEEEECCCCCC-ceeEEEEEecceeeecceEeEEEEcCCCC
Q 008334          509 LIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTK  550 (569)
Q Consensus       509 l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~  550 (569)
                      |.|+|||++..++ ++||++.|+|.++.......+||+|.+..
T Consensus        98 l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           98 LEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            9999999999876 79999999999997766778999998764

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.75  E-value=1e-17  Score=148.13  Aligned_cols=107  Identities=30%  Similarity=0.469  Sum_probs=94.0

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDT  518 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~  518 (569)
                      ..+.|.|+|++|++|+..+..+.+||||++++.. ...+++|+++++|.||+|||+|.|.+...  ....|.|+|||++.
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  111 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC
Confidence            3488999999999999998889999999999953 23578999999999999999999998632  45789999999999


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEEcCC
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFELDG  548 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~  548 (569)
                      .++ ++||++.++|.++..+....+||+|+.
T Consensus       112 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          112 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            865 799999999999988778899999975

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.75  E-value=9.2e-18  Score=150.09  Aligned_cols=110  Identities=24%  Similarity=0.449  Sum_probs=92.2

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccC-CCCEEEEEEEECC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHD  517 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~~~~l~i~V~d~~  517 (569)
                      ..+.|.|+|++|++|+..+ .|.+||||++++..   ...+++|+++++|.||+|||+|.|.+... ....|.|+|||++
T Consensus        25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  103 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRA  103 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECC
T ss_pred             CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCC
Confidence            3588999999999999998 68999999999953   23578999999999999999999998421 2356999999999


Q ss_pred             CCC--CceeEEEEEecceeee-cceEeEEEEcCCCCCe
Q 008334          518 TFG--KDYMGRCILTLTRVIL-EGEYTDCFELDGTKSG  552 (569)
Q Consensus       518 ~~~--~d~lG~~~i~l~~l~~-~~~~~~w~~L~~~~~G  552 (569)
                      ..+  +++||++.++|.++.. +....+||+|.+...|
T Consensus       104 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g  141 (153)
T 3fbk_A          104 SQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG  141 (153)
T ss_dssp             SSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGG
T ss_pred             CCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhc
Confidence            875  4699999999999975 5677899999876544

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.75  E-value=3.4e-18  Score=152.21  Aligned_cols=110  Identities=33%  Similarity=0.547  Sum_probs=95.0

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC-CCCEEEEEEEECCCC
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTF  519 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~~~~l~i~V~d~~~~  519 (569)
                      +.|.|+|++|++|+..+..+.+||||++++...   ..+++|++++++.||+|||+|.|.+... ....|.|+|||++..
T Consensus        31 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~  110 (149)
T 1a25_A           31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT  110 (149)
T ss_dssp             SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred             CEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCC
Confidence            679999999999999998899999999999742   3578999999999999999999999753 246899999999998


Q ss_pred             CC-ceeEEEEEecceeeecceEeEEEEcCCCCCeEE
Q 008334          520 GK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKL  554 (569)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i  554 (569)
                      ++ ++||++.|++.++... ..++||+|.+...|++
T Consensus       111 ~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g~~  145 (149)
T 1a25_A          111 SRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGEY  145 (149)
T ss_dssp             SCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHTT
T ss_pred             CCCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCCcc
Confidence            65 6999999999998765 4789999987655543

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.75  E-value=4.9e-18  Score=147.27  Aligned_cols=108  Identities=23%  Similarity=0.410  Sum_probs=89.6

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEec---CCCcEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRI  328 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~i~v  328 (569)
                      ....|.|.|+|++|++|+..+..|.+||||++++.+.+  .++++|++++++.||+|||+|.|.+..   .....|.|+|
T Consensus        14 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V   93 (129)
T 2bwq_A           14 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL   93 (129)
T ss_dssp             ETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEE
T ss_pred             ccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEE
Confidence            35679999999999999999988999999999996533  468999999999999999999998532   2456899999


Q ss_pred             EECCCCCC--CcceEEEEEEccccCCCceeEEEEEc
Q 008334          329 YDDEGIQS--SELIGCAQVRLCELEPGKVKDVWLKL  362 (569)
Q Consensus       329 ~d~~~~~~--d~~iG~~~i~l~~l~~~~~~~~~~~L  362 (569)
                      ||++..++  |++||++.+++.++.... .+.|++|
T Consensus        94 ~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L  128 (129)
T 2bwq_A           94 WDQARVREEESEFLGEILIELETALLDD-EPHWYKL  128 (129)
T ss_dssp             EEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred             EECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence            99999886  999999999999987654 7899987

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=1.5e-17  Score=145.98  Aligned_cols=111  Identities=20%  Similarity=0.303  Sum_probs=95.4

Q ss_pred             cCccEEEEEEEEEeeccccCCCC-CCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEE-EecC--CCcEEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRIY  329 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~--~~~~L~i~v~  329 (569)
                      ....|.|.|+|++|++|+.++.. +.+||||++++.+.+.++++|+++++++||+|||+|.|. +...  ....|.|+||
T Consensus        18 ~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~   97 (138)
T 1ugk_A           18 NFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTIL   97 (138)
T ss_dssp             EGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEE
T ss_pred             ECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEE
Confidence            35679999999999999999985 899999999998655689999999999999999999996 5432  3468999999


Q ss_pred             ECCCCCCCcceEEEEEEccccCCCce-eEEEEEccc
Q 008334          330 DDEGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVK  364 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l~~~~~-~~~~~~L~~  364 (569)
                      |++.+++|++||++.++|.++..+.. ...|++|.+
T Consensus        98 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~  133 (138)
T 1ugk_A           98 SFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             EECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             ECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence            99999999999999999999977544 456788864

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=3.1e-17  Score=143.93  Aligned_cols=105  Identities=19%  Similarity=0.204  Sum_probs=89.3

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC--CCeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK--SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDT  518 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~--~~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~  518 (569)
                      .+.|.|+|++|++   .+..|.+||||++++..  ...+++|+++++|+||+|||+|.|.+...  ....|.|+|||++.
T Consensus        25 ~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~  101 (138)
T 1wfm_A           25 KAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             TTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC
Confidence            4889999999993   56788999999999953  23468999999999999999999998643  35689999999998


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEEcCCCC
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFELDGTK  550 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~  550 (569)
                      .++ ++||++.++|.++.......+|++|....
T Consensus       102 ~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~  134 (138)
T 1wfm_A          102 FSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             SCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             CCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence            875 79999999999987666678999998653

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.74  E-value=3.5e-18  Score=152.02  Aligned_cols=112  Identities=17%  Similarity=0.336  Sum_probs=97.9

Q ss_pred             cCccEEEEEEEEEeeccccCC-CCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  328 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v  328 (569)
                      ....|.|.|+|++|++|+..+ ..|.+||||++++.+.+.  .+++|+++++++||+|||+|.|.+...  ....|.|+|
T Consensus        19 ~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V   98 (148)
T 3fdw_A           19 EQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSV   98 (148)
T ss_dssp             ETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEE
T ss_pred             eCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEE
Confidence            356799999999999999888 578999999999986443  478999999999999999999998654  345799999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCceeEEEEEcccc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  365 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~  365 (569)
                      ||++..++|++||++.++|.++..+...+.|++|.+.
T Consensus        99 ~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  135 (148)
T 3fdw_A           99 WHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK  135 (148)
T ss_dssp             EEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred             EECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence            9999998999999999999999777677899999754

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=1.1e-17  Score=147.74  Aligned_cols=106  Identities=30%  Similarity=0.432  Sum_probs=91.2

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|++|+..+..| +||||++++...   ..+++|+++++|.||+|||+|.|.+...  ....|.|+|||++
T Consensus        23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  101 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSG  101 (142)
T ss_dssp             TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECC
Confidence            478999999999999999888 999999999532   2578999999999999999999998532  3458999999999


Q ss_pred             CCC--C-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334          518 TFG--K-DYMGRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       518 ~~~--~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      ..+  + ++||++.|+|.++.......+||+|.+.
T Consensus       102 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~  136 (142)
T 2dmg_A          102 GFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED  136 (142)
T ss_dssp             CSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred             CccccCCcEEEEEEEecccccccccccceeeccCC
Confidence            874  3 5999999999998776677899999765

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.74  E-value=1.1e-17  Score=147.75  Aligned_cols=110  Identities=27%  Similarity=0.519  Sum_probs=96.9

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEE-EecC--CCcEEEEEEE
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRIY  329 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~-v~~~--~~~~L~i~v~  329 (569)
                      ...|.|.|+|++|++|+..+..|.+||||++++.+..  ...++|++++++.||+|||+|.|. +...  ....|.|+||
T Consensus        26 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  105 (142)
T 2chd_A           26 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVC  105 (142)
T ss_dssp             GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence            5779999999999999999988999999999998432  368999999999999999999998 5422  2368999999


Q ss_pred             ECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      |++..++|++||++.+++.++..+.....|++|.+
T Consensus       106 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          106 DEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             EECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             ECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            99999899999999999999998888899999854

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=5.3e-18  Score=149.72  Aligned_cols=110  Identities=25%  Similarity=0.384  Sum_probs=94.9

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  329 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~  329 (569)
                      ....|.|.|+|++|++|+.++..| +||||++++.+.+.  .+++|++++++.||+|||+|.|.+...  ....|.|+||
T Consensus        20 ~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~   98 (142)
T 2dmg_A           20 SSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVK   98 (142)
T ss_dssp             ETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEE
T ss_pred             eCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEE
Confidence            356799999999999999999888 99999999975443  689999999999999999999998532  3458999999


Q ss_pred             ECCCCCC--CcceEEEEEEccccCCCceeEEEEEccc
Q 008334          330 DDEGIQS--SELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       330 d~~~~~~--d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      |++.++.  |++||++.+++.++..+...+.|++|.+
T Consensus        99 d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~  135 (142)
T 2dmg_A           99 NSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE  135 (142)
T ss_dssp             ECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred             ECCCccccCCcEEEEEEEecccccccccccceeeccC
Confidence            9998753  5799999999999987777889999964

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.73  E-value=1.9e-17  Score=147.43  Aligned_cols=107  Identities=36%  Similarity=0.553  Sum_probs=94.7

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC-CCcEEEEEEEECCC
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDEG  333 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~v~d~~~  333 (569)
                      .|.|.|+|++|++|+..+..+.+||||++++.+..  ..+++|++++++.||+|||+|.|.+... ....|.|+|||++.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            57899999999999999988999999999998532  4678999999999999999999998753 24589999999999


Q ss_pred             CCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          334 IQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      .++|++||++.+++.++..+ ..+.|++|..
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~  139 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKA-GVDGWFKLLS  139 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             CCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence            98999999999999999776 4789999964

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.73  E-value=7.4e-17  Score=141.58  Aligned_cols=109  Identities=26%  Similarity=0.388  Sum_probs=91.2

Q ss_pred             cceEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEE-eccC--CCCEEEEEEEEC
Q 008334          442 IRGVLSVTVILAENLPASDLM-GKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFV-VEDG--LHDMLIAEVWDH  516 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~-g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~-v~~~--~~~~l~i~V~d~  516 (569)
                      ..+.|.|+|++|++|+..+.. |.+||||++++.. ...+++|+++++|.||+|||+|.|. +...  ....|.|+|||+
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~   99 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEEC
Confidence            348899999999999999885 8999999999974 2368999999999999999999996 6532  346899999999


Q ss_pred             CCCCC-ceeEEEEEecceeeecce-EeEEEEcCCCC
Q 008334          517 DTFGK-DYMGRCILTLTRVILEGE-YTDCFELDGTK  550 (569)
Q Consensus       517 ~~~~~-d~lG~~~i~l~~l~~~~~-~~~w~~L~~~~  550 (569)
                      +..++ ++||++.++|.++..... ..-|++|+..+
T Consensus       100 d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~  135 (138)
T 1ugk_A          100 DRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP  135 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred             CCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCC
Confidence            98865 799999999999977643 45678887653

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=6.6e-18  Score=150.01  Aligned_cols=111  Identities=21%  Similarity=0.379  Sum_probs=95.6

Q ss_pred             cCccEEEEEEEEEeeccccC-CC------CCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNK-DL------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHL  324 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~-d~------~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L  324 (569)
                      ....|.|.|+|++|++|+.. +.      .+.+||||++++.+.+.++++|++++++.||+|||+|.|.+...  ....|
T Consensus        22 ~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L  101 (147)
T 2enp_A           22 DLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTL  101 (147)
T ss_dssp             ETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEE
T ss_pred             cCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEE
Confidence            35779999999999999984 33      35899999999986556789999999999999999999998642  24589


Q ss_pred             EEEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          325 VVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       325 ~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      .|+|||++.+++|++||++.++|.++..+.....|+.|.+
T Consensus       102 ~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~  141 (147)
T 2enp_A          102 LLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP  141 (147)
T ss_dssp             EEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred             EEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence            9999999999999999999999999987776788998864

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.73  E-value=7.6e-18  Score=148.50  Aligned_cols=110  Identities=23%  Similarity=0.413  Sum_probs=94.8

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecC--CCCeEEeeecCCCCCCeeccEEEEEEec---CCCcEEEEEEE
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY  329 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~i~v~  329 (569)
                      ...+.|.|+|++|++|+.++..|.+||||++++.+.  ..++++|++++++.||+|||+|.|.+..   .....|.|+||
T Consensus        18 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~   97 (141)
T 1v27_A           18 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   97 (141)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEE
T ss_pred             CCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEE
Confidence            567999999999999999998999999999998542  2567899999999999999999998432   23568999999


Q ss_pred             ECCCCCC--CcceEEEEEEccccCCCceeEEEEEcccc
Q 008334          330 DDEGIQS--SELIGCAQVRLCELEPGKVKDVWLKLVKD  365 (569)
Q Consensus       330 d~~~~~~--d~~iG~~~i~l~~l~~~~~~~~~~~L~~~  365 (569)
                      |++..++  |++||++.+++.++.... .+.|++|.+.
T Consensus        98 d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~  134 (141)
T 1v27_A           98 DQARVREEESEFLGEILIELETALLDD-EPHWYKLQTH  134 (141)
T ss_dssp             EBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred             ECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence            9999886  999999999999987654 7899999753

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.73  E-value=1.9e-17  Score=145.33  Aligned_cols=107  Identities=16%  Similarity=0.149  Sum_probs=92.8

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecC-CCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEEC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  331 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~  331 (569)
                      ...+.|.|+|++|+   ++|..|.+||||++++.+. +...++|+++++++||+|||+|.|.+...  ....|.|+|||+
T Consensus        23 ~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T 1wfm_A           23 CQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEEC
Confidence            56799999999999   3677899999999999753 23468999999999999999999998643  356899999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      +.+++|++||++.++|.++..+...+.|++|.+
T Consensus       100 d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~  132 (138)
T 1wfm_A          100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             CCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence            999999999999999999976677889999964

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.73  E-value=1e-16  Score=158.84  Aligned_cols=121  Identities=30%  Similarity=0.514  Sum_probs=106.0

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC-CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  519 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~-~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~  519 (569)
                      .+.|.|+|++|++|+..+..|.+||||+++++.. ..+++|+++++++||.|||+|.|.+...  ....|.|+|||++..
T Consensus        18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~   97 (284)
T 2r83_A           18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF   97 (284)
T ss_dssp             TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCC
Confidence            4889999999999999998999999999999742 3578999999999999999999998643  457899999999988


Q ss_pred             CC-ceeEEEEEecceeeecceEeEEEEcCCC------CCeEEEEEEEEeec
Q 008334          520 GK-DYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQ  563 (569)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~  563 (569)
                      ++ ++||++.++|.++..+.....|++|...      ..|+|++.+.|.|.
T Consensus        98 ~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~  148 (284)
T 2r83_A           98 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPT  148 (284)
T ss_dssp             SCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETT
T ss_pred             CCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCc
Confidence            65 7999999999999887788999999643      46999999999874

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.73  E-value=3.7e-17  Score=148.90  Aligned_cols=105  Identities=25%  Similarity=0.386  Sum_probs=91.9

Q ss_pred             eEEEEEEEEeEcCCCCCC-CCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEE-ECCC
Q 008334          444 GVLSVTVILAENLPASDL-MGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW-DHDT  518 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~-~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~-d~~~  518 (569)
                      +.|.|+|++|++|+..+. .|.+||||++++....   .+++|+++++|+||+|||+|.|.+.. ....|.|+|| |++.
T Consensus        30 ~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~d~  108 (171)
T 2q3x_A           30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDYGR  108 (171)
T ss_dssp             TEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEECST
T ss_pred             CEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcCCC
Confidence            789999999999999985 7899999999997533   37899999999999999999999863 5678999999 9998


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      .++ ++||++.|+|.++..+....+||+|.+.
T Consensus       109 ~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A          109 MDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             TCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            876 6999999999999877778999999765

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.73  E-value=5.6e-17  Score=143.10  Aligned_cols=107  Identities=26%  Similarity=0.465  Sum_probs=92.3

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEE-eccC--CCCEEEEEEEE
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFV-VEDG--LHDMLIAEVWD  515 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~-v~~~--~~~~l~i~V~d  515 (569)
                      ..+.|.|+|++|++|+..+..|.+||||++++.+.   ..+++|++++++.||+|||+|.|. +...  ....|.|+|||
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d  106 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCD  106 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEE
Confidence            35889999999999999998999999999999742   368899999999999999999998 5421  23689999999


Q ss_pred             CCCCCC-ceeEEEEEecceeeecceEeEEEEcCC
Q 008334          516 HDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG  548 (569)
Q Consensus       516 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~  548 (569)
                      ++..++ ++||++.+++.++..+.....|++|+.
T Consensus       107 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          107 EDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             ECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             CCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            999876 699999999999987777788888865

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.72  E-value=1.5e-17  Score=151.46  Aligned_cols=109  Identities=25%  Similarity=0.400  Sum_probs=95.4

Q ss_pred             ccEEEEEEEEEeeccccCCC-CCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEE-EC
Q 008334          256 PVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY-DD  331 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~-d~  331 (569)
                      ..|.|.|+|++|++|+.+|. .|.+||||++++.+.+.  .+++|+++++++||+|||+|.|.+.. ....|.|+|| |+
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~  106 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY  106 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence            46899999999999999985 68999999999985332  37899999999999999999999853 4678999999 99


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEcccc
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  365 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~  365 (569)
                      +.+++|++||++.++|.++..+...+.|++|.+.
T Consensus       107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A          107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             STTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            9999999999999999999888888999999754

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.72  E-value=9.8e-17  Score=144.42  Aligned_cols=108  Identities=27%  Similarity=0.464  Sum_probs=90.7

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|++|+..+..|.+||||++++....   .+++|+++++|.||+|||+|.|.+...  ....|.|+|||++
T Consensus        24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d  103 (159)
T 1tjx_A           24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  103 (159)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECC
Confidence            48899999999999999989999999999996422   478999999999999999999998643  2467999999999


Q ss_pred             CCCC-ceeEEEEEeccee----------ee--cceEeEEEEcCCCC
Q 008334          518 TFGK-DYMGRCILTLTRV----------IL--EGEYTDCFELDGTK  550 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l----------~~--~~~~~~w~~L~~~~  550 (569)
                      ..++ ++||++.|++..+          ..  .....+||+|....
T Consensus       104 ~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~  149 (159)
T 1tjx_A          104 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE  149 (159)
T ss_dssp             SSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHH
T ss_pred             CCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCcc
Confidence            9865 7999999999853          22  23568999998653

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.72  E-value=3.7e-17  Score=146.13  Aligned_cols=112  Identities=27%  Similarity=0.470  Sum_probs=95.3

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecC--CCCeEEeeecCCCCCCeeccEEEEEEecC-CCcEEEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIY  329 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~v~  329 (569)
                      +....|.|.|+|++|++|+..+ .|.+||||++++.+.  ...+++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus        22 y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~  100 (153)
T 3fbk_A           22 IDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVW  100 (153)
T ss_dssp             EEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEE
T ss_pred             EECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEE
Confidence            3467899999999999999998 699999999999743  24679999999999999999999998422 2346999999


Q ss_pred             ECCCCCC-CcceEEEEEEccccCC-CceeEEEEEcccc
Q 008334          330 DDEGIQS-SELIGCAQVRLCELEP-GKVKDVWLKLVKD  365 (569)
Q Consensus       330 d~~~~~~-d~~iG~~~i~l~~l~~-~~~~~~~~~L~~~  365 (569)
                      |++..++ |++||++.+++.++.. +.....|++|.+.
T Consensus       101 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~  138 (153)
T 3fbk_A          101 NRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE  138 (153)
T ss_dssp             ECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred             eCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence            9999876 9999999999999974 6778899999754

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=2.6e-17  Score=146.13  Aligned_cols=107  Identities=22%  Similarity=0.307  Sum_probs=90.3

Q ss_pred             ceEEEEEEEEeEcCCCC-CCC------CCCCcEEEEEEeCC-CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEE
Q 008334          443 RGVLSVTVILAENLPAS-DLM------GKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAE  512 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~-~~~------g~~dpyv~v~l~~~-~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~  512 (569)
                      .+.|.|+|++|++|+.. +.+      |.+||||++++... ..+++|++++++.||+|||+|.|.+...  ....|.|+
T Consensus        25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~  104 (147)
T 2enp_A           25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLT  104 (147)
T ss_dssp             TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEE
T ss_pred             CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEE
Confidence            48899999999999984 433      57999999999742 3578999999999999999999998632  23589999


Q ss_pred             EEECCCCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334          513 VWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       513 V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      |||++..++ ++||++.|+|.++........|++|...
T Consensus       105 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  142 (147)
T 2enp_A          105 VVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS  142 (147)
T ss_dssp             EECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred             EEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence            999998875 6999999999999776667899999865

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.72  E-value=3.7e-17  Score=148.73  Aligned_cols=118  Identities=25%  Similarity=0.379  Sum_probs=99.3

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  521 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~  521 (569)
                      ..+.|.|+|++|++|+..+..+.+||||++++++  .+++|+++++|+||+|||+|.|.+..  ...|.|+|||++..++
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~--~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~~~  109 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG--QSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKS  109 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT--EEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSC
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECC--EEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCCCC
Confidence            4688999999999999444345599999999976  88999999999999999999999863  7889999999998865


Q ss_pred             -ceeEEEEEecceeeecc-----eEeEEEEcCCC-----CCeEEEEEEEEeec
Q 008334          522 -DYMGRCILTLTRVILEG-----EYTDCFELDGT-----KSGKLKLHLKWMPQ  563 (569)
Q Consensus       522 -d~lG~~~i~l~~l~~~~-----~~~~w~~L~~~-----~~G~i~l~~~~~p~  563 (569)
                       ++||++.++|.++....     ....|++|...     ..|+|++.+.+.+.
T Consensus       110 dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          110 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             CceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence             69999999999987532     23679999653     47999999999876

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.71  E-value=3.5e-18  Score=150.86  Aligned_cols=108  Identities=23%  Similarity=0.453  Sum_probs=93.8

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC-----------CeEEeeecCCCCCCeeccEEEEE-Eec--CCCc
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE-----------KTKKSKTINNDLNPIWNEHFEFI-VED--ESTQ  322 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-----------~~~kT~~~~~t~nP~wne~f~f~-v~~--~~~~  322 (569)
                      .|.|.|+|++|++|+.+|..|.+||||++++.+...           .+++|+++++++||+|||+|.|. +..  ....
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            589999999999999999899999999999985432           25789999999999999999997 532  2456


Q ss_pred             EEEEEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          323 HLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       323 ~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      .|.|+|||++..++|++||++.+++.++..+...+.|++|.+
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  138 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE  138 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCc
Confidence            899999999999899999999999999877667789999964

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.71  E-value=1.1e-16  Score=140.31  Aligned_cols=92  Identities=30%  Similarity=0.479  Sum_probs=80.7

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccCC--CCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~~--~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|++|+..+..|.+||||++++.+.   ..+++|++++++.||+|||+|.|.+....  ...|.|+|||++
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~   94 (138)
T 3n5a_A           15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKD   94 (138)
T ss_dssp             TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECC
T ss_pred             CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECC
Confidence            4889999999999999998999999999999743   24789999999999999999999986432  368999999999


Q ss_pred             CCCC-ceeEEEEEeccee
Q 008334          518 TFGK-DYMGRCILTLTRV  534 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l  534 (569)
                      ..++ ++||++.+++.++
T Consensus        95 ~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           95 KLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             SSSCCEEEEEEEESSSSC
T ss_pred             CCCCCcEEEEEEEccccC
Confidence            8865 6999999999964

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.71  E-value=1.1e-16  Score=143.01  Aligned_cols=91  Identities=29%  Similarity=0.416  Sum_probs=74.6

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|++|+..+..|.+||||++++....   .+++|+++++|+||+|||+|.|.+...  ....|.|+|||++
T Consensus        29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d  108 (153)
T 1w15_A           29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE  108 (153)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCC
Confidence            48899999999999999988999999999995422   267999999999999999999998754  2368999999999


Q ss_pred             CCCC-ceeEEEEEecce
Q 008334          518 TFGK-DYMGRCILTLTR  533 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~  533 (569)
                      ..++ ++||++.|++++
T Consensus       109 ~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          109 RGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             TTSCCEEEEEEEESTTC
T ss_pred             CCCCCcEEEEEEECCCC
Confidence            8865 799999999988

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.71  E-value=7.1e-17  Score=145.32  Aligned_cols=111  Identities=32%  Similarity=0.456  Sum_probs=94.4

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  329 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~  329 (569)
                      .+..|.|.|+|++|++|+..+..|.+||||++++.+.+.  ..++|++++++.||+|||+|.|.+...  ....|.|+||
T Consensus        21 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~  100 (159)
T 1tjx_A           21 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVL  100 (159)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEE
T ss_pred             cCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEE
Confidence            356799999999999999999889999999999975332  468999999999999999999998643  2458999999


Q ss_pred             ECCCCCCCcceEEEEEEcccc------------CCCceeEEEEEccc
Q 008334          330 DDEGIQSSELIGCAQVRLCEL------------EPGKVKDVWLKLVK  364 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l------------~~~~~~~~~~~L~~  364 (569)
                      |++..++|++||++.+++..+            .++.....|++|..
T Consensus       101 d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~  147 (159)
T 1tjx_A          101 DYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (159)
T ss_dssp             ECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             ECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence            999999999999999999853            34456778998864

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.70  E-value=3.1e-16  Score=142.22  Aligned_cols=106  Identities=29%  Similarity=0.472  Sum_probs=88.9

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|++|+..+..|.+||||++++.+.   ..+++|+++++|+||+|||+|.|.+...  ....|.|+|||++
T Consensus        36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  115 (166)
T 2cm5_A           36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD  115 (166)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECC
Confidence            4889999999999999998999999999999752   3588999999999999999999999643  3568999999999


Q ss_pred             CCCC-ceeEEEEEecceeee------------cceEeEEEEcCC
Q 008334          518 TFGK-DYMGRCILTLTRVIL------------EGEYTDCFELDG  548 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~------------~~~~~~w~~L~~  548 (569)
                      ..++ ++||++.|++.++..            ++...+|+.|.+
T Consensus       116 ~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~  159 (166)
T 2cm5_A          116 IGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN  159 (166)
T ss_dssp             SSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC
T ss_pred             CCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCC
Confidence            9875 799999999998521            233467777754

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.70  E-value=7.3e-17  Score=141.58  Aligned_cols=97  Identities=25%  Similarity=0.458  Sum_probs=85.1

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecCC--CcEEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIY  329 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~v~  329 (569)
                      ....|.|.|+|++|++|+..+..|.+||||++++.+.+.  .+++|++++++.||+|||+|.|.+....  ...|.|+||
T Consensus        12 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~   91 (138)
T 3n5a_A           12 NPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVM   91 (138)
T ss_dssp             ETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEE
T ss_pred             cCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEE
Confidence            356799999999999999999889999999999975322  4788999999999999999999986442  368999999


Q ss_pred             ECCCCCCCcceEEEEEEcccc
Q 008334          330 DDEGIQSSELIGCAQVRLCEL  350 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l  350 (569)
                      |++..++|++||++.+++.++
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           92 DKDKLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             ECCSSSCCEEEEEEEESSSSC
T ss_pred             ECCCCCCCcEEEEEEEccccC
Confidence            999999999999999999864

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.69  E-value=2.1e-16  Score=143.32  Aligned_cols=97  Identities=25%  Similarity=0.412  Sum_probs=85.9

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  329 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~  329 (569)
                      .+..|.|.|+|++|++|+..+..|.+||||++++.+..  ..+++|+++++++||+|||+|.|.+...  ....|.|+||
T Consensus        33 ~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~  112 (166)
T 2cm5_A           33 STQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVW  112 (166)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEE
T ss_pred             ECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEE
Confidence            35689999999999999999988999999999998532  3689999999999999999999998643  3568999999


Q ss_pred             ECCCCCCCcceEEEEEEcccc
Q 008334          330 DDEGIQSSELIGCAQVRLCEL  350 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l  350 (569)
                      |++..++|++||++.+++.++
T Consensus       113 d~d~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A          113 DYDIGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             ECCSSSCCEEEEEEEEETTCC
T ss_pred             ECCCCCCCcEEEeEEEecccC
Confidence            999999999999999999875

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.68  E-value=1.7e-16  Score=141.84  Aligned_cols=108  Identities=24%  Similarity=0.343  Sum_probs=84.0

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCC--eEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY  329 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~  329 (569)
                      .+..|.|.|+|++|++|+..+..|.+||||++++.+.+..  +++|+++++++||+|||+|.|.+...  ....|.|+||
T Consensus        26 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~  105 (153)
T 1w15_A           26 QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVL  105 (153)
T ss_dssp             ETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEE
T ss_pred             cCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEE
Confidence            3567999999999999999998899999999999753332  67999999999999999999998754  2368999999


Q ss_pred             ECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      |++.+++|++||++.+++.+  .+...+.|+.|.
T Consensus       106 d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~  137 (153)
T 1w15_A          106 DSERGSRNEVIGRLVLGATA--EGSGGGHWKEIC  137 (153)
T ss_dssp             ECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHH
T ss_pred             eCCCCCCCcEEEEEEECCCC--CchHHHHHHHHH
Confidence            99999999999999999987  223334454443

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.67  E-value=5.9e-16  Score=134.09  Aligned_cols=118  Identities=21%  Similarity=0.311  Sum_probs=83.8

Q ss_pred             ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecC-CCCCCeeccEEEEEEecCCCcEEEEEEEECCCC
Q 008334          256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  334 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~  334 (569)
                      +.|.|.|+|++|+++..   .|.+||||+++ .    +..+|+++. ++.||+|||+|.|.+.+. ...|.|+|||++ .
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~----~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~   72 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V----QNVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-L   72 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E----TTEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-S
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE-e----cCEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-C
Confidence            46899999999998852   57899999999 3    234555554 799999999999999864 457999999999 8


Q ss_pred             CCCcceEEEEEEccccCCCc--eeEEEEEccccccccCCCccee-------EEEEEEEE
Q 008334          335 QSSELIGCAQVRLCELEPGK--VKDVWLKLVKDLDVQRDTKYRG-------QVHLELLY  384 (569)
Q Consensus       335 ~~d~~iG~~~i~l~~l~~~~--~~~~~~~L~~~~~~~~~~~~~G-------~l~l~l~~  384 (569)
                      ++|++||++.++|.++....  ....|.++..... ..+++..|       .+.+++.|
T Consensus        73 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~G~~~p~~~~~~~~~~~  130 (131)
T 2cjt_A           73 IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAI-MADSEICGTKDPTFHRILLDAHF  130 (131)
T ss_dssp             SCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC-----------CCSCCCCCEEEEEEEE
T ss_pred             CCCCeEEEEEEEHHHhhhcCCCCccccEEcccccc-cCCCcCcceECCCccEEEEEEEe
Confidence            89999999999999985433  1225666543221 12233333       47776665

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.65  E-value=7.6e-16  Score=131.07  Aligned_cols=120  Identities=20%  Similarity=0.274  Sum_probs=102.3

Q ss_pred             ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecC-CCCCCeeccEEEEEEecC--CCcEEEEEEEECC
Q 008334          256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE  332 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~~  332 (569)
                      ..-.|+|+|.+|++|+     |++|||+++.+.   +.+++|++++ ++.||+|||.|.|.+..+  .+..|.+.|||++
T Consensus        19 ~~msL~V~l~~a~~Lp-----g~~Dp~akv~FR---g~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~   90 (144)
T 3l9b_A           19 SHMALIVHLKTVSELR-----GRADRIAKVTFR---GQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYS   90 (144)
T ss_dssp             CCEEEEEEEEEEESCC-----SCEEEEEEEEET---TEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEEC
T ss_pred             CcEEEEEEEEEecCCC-----CCCCCeEEEEEe---ccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECc
Confidence            3457999999999998     678999999996   7899999997 699999999999999754  4668999999999


Q ss_pred             CCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEec
Q 008334          333 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF  387 (569)
Q Consensus       333 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~  387 (569)
                      +++++++||++.++|+++........+.+|.+.    +.....++|.++++|.|+
T Consensus        91 ~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~----n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           91 KVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDD----NNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             TTSCCEEEEEEEEESHHHHHHSEEEEEEEEECT----TSCEEEEEEEEEEEEEET
T ss_pred             cccCCCEEEEEEEEhHHhccCCeEEEeecccCC----CCCccccEEEEEEEecCC
Confidence            999999999999999999776666666666542    234456899999999984

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.63  E-value=1.4e-14  Score=153.77  Aligned_cols=169  Identities=18%  Similarity=0.263  Sum_probs=123.4

Q ss_pred             Eecccc-eeeEEEEEccccccC-CcchhHHHHHHHHHHHhhhccc-----c--ceEeeeCCCCC------------c-cc
Q 008334          194 SLREKK-KLDFKLKVVGGDIST-IPGLSDSIEATIHDAIEDSITW-----P--VRKIVPILPGD------------Y-SE  251 (569)
Q Consensus       194 ~f~~~p-~ldf~l~~~g~~i~~-iP~l~~~~~~~i~~~l~~~~~~-----P--~~~~~~l~~~~------------~-~~  251 (569)
                      ++...| .|++.+.++- ++.. .+--...++.++...+.+.-.+     |  |-. .++. |.            . ..
T Consensus       310 Sv~~~P~~I~~~l~PI~-~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~-~~l~-g~~C~C~C~~~~~t~~~~  386 (540)
T 3nsj_A          310 SLPSNPGLVDYSLEPLH-TLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQ-HKSS-HDSCQCECQDSKVTNQDC  386 (540)
T ss_dssp             HTTTSCEEEEEEEEEGG-GGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTE-EECS-SCTTCEEESCTTTBCGGG
T ss_pred             HHhhCCceEEEEEEEHH-HhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCC-ccCC-CCceEeeCCCCCCccccc
Confidence            444444 5888888874 3321 2333456777777777765444     3  221 1221 11            0 11


Q ss_pred             ccc-CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEec-CCCcEEEEEEE
Q 008334          252 LEL-KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-ESTQHLVVRIY  329 (569)
Q Consensus       252 ~~~-~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-~~~~~L~i~v~  329 (569)
                      .+. ...|.|+|+|++|++|+. |..|++||||+++++   ++.++|+++++++||+|||+|.|.+.+ ...+.|.|+||
T Consensus       387 C~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~---~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~  462 (540)
T 3nsj_A          387 CPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFG---GQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVW  462 (540)
T ss_dssp             CBSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEET---TEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEE
T ss_pred             ccccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEEC---CEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEE
Confidence            222 358999999999999998 989999999999997   567999999999999999999998653 35678999999


Q ss_pred             ECCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      |+|..++||+||.+.++|.   . ...+.|++|.           .|.|++.++.
T Consensus       463 D~D~~~~dD~LG~~~~~L~---~-g~~~~~~~l~-----------~G~l~~~~~~  502 (540)
T 3nsj_A          463 DADYGWDDDLLGSCDRSPH---S-GFHEVTCELN-----------HGRVKFSYHA  502 (540)
T ss_dssp             ECCSSSCCEEEEEEEECCC---S-EEEEEEEECS-----------SSEEEEEEEE
T ss_pred             ECCCCCCCCEEEEEEEEee---C-CcEEEEEEcC-----------CeEEEEEEEE
Confidence            9999989999999999987   2 3467888762           4788887764

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.62  E-value=2e-15  Score=150.25  Aligned_cols=121  Identities=30%  Similarity=0.477  Sum_probs=99.5

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  519 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~  519 (569)
                      .+.|.|+|++|++|+..+..|.+||||++++.. +..+++|+++++|+||+|||+|.|.+...  ....|.|+|||++..
T Consensus        19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~   98 (296)
T 1dqv_A           19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF   98 (296)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred             CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCC
Confidence            488999999999999999999999999999942 24678999999999999999999998633  345899999999988


Q ss_pred             CC-ceeEEEEEe-cceeee-cceEeEEEEcCCC-----CCeEEEEEEEEeec
Q 008334          520 GK-DYMGRCILT-LTRVIL-EGEYTDCFELDGT-----KSGKLKLHLKWMPQ  563 (569)
Q Consensus       520 ~~-d~lG~~~i~-l~~l~~-~~~~~~w~~L~~~-----~~G~i~l~~~~~p~  563 (569)
                      ++ ++||++.++ +.++.. ......|++|...     ..|+|++.+.|.|.
T Consensus        99 ~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~  150 (296)
T 1dqv_A           99 SRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPT  150 (296)
T ss_dssp             SCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETT
T ss_pred             CCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEeccc
Confidence            65 799999996 545443 2345789999642     46999999999874

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.62  E-value=1e-15  Score=164.48  Aligned_cols=120  Identities=22%  Similarity=0.416  Sum_probs=104.8

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  334 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~  334 (569)
                      ...|.|.|+|++|++|+++|..|.+||||+++++   .++++|+++++++||+|||+|.|.+.....+.|.|+|||+|.+
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~---~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~  460 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMG---SQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF  460 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEEC---CeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence            4679999999999999999999999999999996   6789999999999999999999999877778899999999999


Q ss_pred             CCCcceEEEEEEccccCCCce----eEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          335 QSSELIGCAQVRLCELEPGKV----KDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       335 ~~d~~iG~~~i~l~~l~~~~~----~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                      ++|++||++.+++.++..+..    ...|+++.        +...|+|++.+.+.
T Consensus       461 ~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~--------~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          461 SPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH--------EVPTGEVWVRFDLQ  507 (510)
T ss_dssp             SSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB--------SSSSCEEEEEEEEE
T ss_pred             CCCCceEEEEEEHHHhccccCCCCceeeeecCC--------CCCCceEEEEEEEE
Confidence            999999999999999875443    56888874        34679998888764

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.62  E-value=2.7e-15  Score=161.16  Aligned_cols=119  Identities=30%  Similarity=0.501  Sum_probs=106.1

Q ss_pred             ccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCC
Q 008334          441 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  520 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~  520 (569)
                      ...+.|.|+|++|++|+..+..|.+||||++++++  .+++|+++++|+||.|||+|.|.+.......|.|+|||++..+
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~--~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~  461 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGS--QSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFS  461 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT--EEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSS
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECC--eeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC
Confidence            35689999999999999999999999999999965  7889999999999999999999998777788999999999987


Q ss_pred             C-ceeEEEEEecceeeecce----EeEEEEcCCCCCeEEEEEEEEe
Q 008334          521 K-DYMGRCILTLTRVILEGE----YTDCFELDGTKSGKLKLHLKWM  561 (569)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~~----~~~w~~L~~~~~G~i~l~~~~~  561 (569)
                      + ++||++.+++.++..+..    ...|++|.+...|+|++.+++.
T Consensus       462 ~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          462 PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             CCCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence            5 799999999999876543    6899999999999999988764

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.58  E-value=1e-14  Score=131.47  Aligned_cols=88  Identities=20%  Similarity=0.279  Sum_probs=74.4

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecC-CCCCCeeccEEEEEEecCCCcEEEEEEEECCC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  333 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~  333 (569)
                      .+.|.|.|+|++|+++.   ..|.+||||+++ .    +..+|+++. ++.||+|||+|.|.+.+. ...|.|+|||++ 
T Consensus        11 g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~----~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-   80 (167)
T 2cjs_A           11 GILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V----QNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-   80 (167)
T ss_dssp             SCCCEEEEEEEEEECSS---CGGGCEEEEEEE-E----TTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-
T ss_pred             CceEEEEEEEEEEECCC---CCCCCCeEEEEE-e----cceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-
Confidence            35789999999999884   258899999999 3    335666665 699999999999999864 457999999999 


Q ss_pred             CCCCcceEEEEEEccccCC
Q 008334          334 IQSSELIGCAQVRLCELEP  352 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~~  352 (569)
                      .++|++||++.++|.++..
T Consensus        81 ~~~dd~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           81 LIWDTMVGTVWIPLRTIRQ   99 (167)
T ss_dssp             SSCCEEEEEEEEEGGGSCB
T ss_pred             CCCCceEEEEEEEHHHhcc
Confidence            8889999999999999854

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.57  E-value=2.8e-14  Score=121.41  Aligned_cols=113  Identities=17%  Similarity=0.230  Sum_probs=97.2

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccC-CCCCCeeceEEEEEeccC--CCCEEEEEEEECCCCC
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG  520 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~~  520 (569)
                      --|+|++.+|.+|+     |.+|||+++.+.+  .+++|++++ ++.||+|||.|+|++..+  ..+.|.+.|+|++.++
T Consensus        21 msL~V~l~~a~~Lp-----g~~Dp~akv~FRg--~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~   93 (144)
T 3l9b_A           21 MALIVHLKTVSELR-----GRADRIAKVTFRG--QSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVF   93 (144)
T ss_dssp             EEEEEEEEEEESCC-----SCEEEEEEEEETT--EEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTS
T ss_pred             EEEEEEEEEecCCC-----CCCCCeEEEEEec--cceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcccc
Confidence            45999999999998     5789999999964  889999998 699999999999999754  4579999999999987


Q ss_pred             C-ceeEEEEEecceeeecceEeEEEEcCCCC----CeEEEEEEEEeec
Q 008334          521 K-DYMGRCILTLTRVILEGEYTDCFELDGTK----SGKLKLHLKWMPQ  563 (569)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~----~G~i~l~~~~~p~  563 (569)
                      + .+||++.++|.++..++...-+-+|.+.+    .+.|.+++.|.|-
T Consensus        94 ~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           94 SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEET
T ss_pred             CCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCC
Confidence            6 69999999999999888776666664432    5899999999984

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.55  E-value=5e-15  Score=161.79  Aligned_cols=110  Identities=28%  Similarity=0.571  Sum_probs=100.2

Q ss_pred             cCccEEEEEEEEEeecccc---CCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD  330 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~---~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d  330 (569)
                      ..+.|.|+|+|++|++|+.   +|..|.+||||++++.+...+++||+++++++||+|||+|.|.+.....+.|.|+|||
T Consensus        14 ~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D   93 (749)
T 1cjy_A           14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD   93 (749)
T ss_dssp             CCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEE
T ss_pred             CCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEE
Confidence            3678999999999999998   7888999999999998554578999999999999999999999987667789999999


Q ss_pred             CCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          331 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       331 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      +|.++ |++||++.+++.++..+...+.|++|.+
T Consensus        94 ~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~  126 (749)
T 1cjy_A           94 ANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ  126 (749)
T ss_dssp             CCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred             CCCCC-CceeEEEEEEHHHcCCCCceEEEEecCC
Confidence            99998 9999999999999988888899999964

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.54  E-value=5.9e-14  Score=121.41  Aligned_cols=88  Identities=24%  Similarity=0.317  Sum_probs=71.6

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccC-CCCCCeeceEEEEEeccCCCCEEEEEEEECCCCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  520 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~  520 (569)
                      ..+.|.|+|++|++++.   .|.+||||+++ +.   ..+|++++ ++.||+|||+|.|.+.+. ...|.|+|||++ .+
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~~---~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~   73 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-VQ---NVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LI   73 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE-ET---TEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-SS
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE-ec---CEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-CC
Confidence            35899999999998853   67899999999 32   23454444 699999999999999853 567999999999 65


Q ss_pred             C-ceeEEEEEecceeeecc
Q 008334          521 K-DYMGRCILTLTRVILEG  538 (569)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~  538 (569)
                      . ++||++.|+|+++....
T Consensus        74 ~dd~iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           74 WDTMVGTVWIPLRTIRQSN   92 (131)
T ss_dssp             CEEEEEEEEEEGGGSCBCS
T ss_pred             CCCeEEEEEEEHHHhhhcC
Confidence            5 79999999999986543

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.52  E-value=9.7e-14  Score=147.24  Aligned_cols=110  Identities=26%  Similarity=0.299  Sum_probs=94.7

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEecc-CCCCEEEEEEEECCCCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDTFG  520 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~-~~~~~l~i~V~d~~~~~  520 (569)
                      ..+.|+|+|++|++|+. |..|.+||||++++++  .+++|+++++++||+|||+|.|.+.+ .....|.|+|||+|..+
T Consensus       392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~--~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~  468 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGG--QEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGW  468 (540)
T ss_dssp             TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETT--EEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSS
T ss_pred             cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECC--EeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCC
Confidence            36899999999999998 8899999999999975  56999999999999999999998643 35678999999999987


Q ss_pred             C-ceeEEEEEecceeeecceEeEEEEcCCCCCeEEEEEEEEe
Q 008334          521 K-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWM  561 (569)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~  561 (569)
                      + |+||++.++|..    +....|++|+   .|.|+++++..
T Consensus       469 ~dD~LG~~~~~L~~----g~~~~~~~l~---~G~l~~~~~~~  503 (540)
T 3nsj_A          469 DDDLLGSCDRSPHS----GFHEVTCELN---HGRVKFSYHAK  503 (540)
T ss_dssp             CCEEEEEEEECCCS----EEEEEEEECS---SSEEEEEEEEE
T ss_pred             CCCEEEEEEEEeeC----CcEEEEEEcC---CeEEEEEEEEE
Confidence            6 799999999983    4467899876   48888877654

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.50  E-value=1.9e-13  Score=148.33  Aligned_cols=124  Identities=17%  Similarity=0.306  Sum_probs=102.1

Q ss_pred             ccEEEEEEEEEeeccccCCC--CCCCCcEEEEEEecC--CCCeEEeeecCCC-CCCeeccEEEEEEecCCCcEEEEEEEE
Q 008334          256 PVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPL--PEKTKKSKTINND-LNPIWNEHFEFIVEDESTQHLVVRIYD  330 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~kT~~~~~t-~nP~wne~f~f~v~~~~~~~L~i~v~d  330 (569)
                      ..+.|+|+|++|++|+..+.  .+.+||||++.+...  ...++||++++++ .||+|||+|.|.+..+....|+|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            57899999999999998874  688999999999632  2357899999887 999999999999987666789999999


Q ss_pred             CCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          331 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       331 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                      +|..++|++||++.++|..|..|.   .|++|....   ...-..|.|.+.+.+.
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~---g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKN---GDQHPSATLFVKISIQ  623 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTT---SCEEEEEEEEEEEEEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCC---cCCCCceEEEEEEEEE
Confidence            999989999999999999998753   588886431   1112467888888763

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.47  E-value=1e-13  Score=151.55  Aligned_cols=113  Identities=23%  Similarity=0.480  Sum_probs=99.2

Q ss_pred             cceEEEEEEEEeEcCCC---CCCCCCCCcEEEEEEeCC-CeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECC
Q 008334          442 IRGVLSVTVILAENLPA---SDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD  517 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~---~~~~g~~dpyv~v~l~~~-~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~  517 (569)
                      ..+.|+|+|++|++|+.   .|..|.+||||++++++. ..+++|+++++++||+|||+|.|.+.......|.|+|||++
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D   95 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN   95 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC
Confidence            46899999999999998   777889999999999742 36789999999999999999999998766778999999999


Q ss_pred             CCCCceeEEEEEecceeeecceEeEEEEcCCCCCeEEEE
Q 008334          518 TFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKL  556 (569)
Q Consensus       518 ~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l  556 (569)
                      ..++++||++.|+|.++..+.....|++|.+.  +++.+
T Consensus        96 ~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~~--~e~~l  132 (749)
T 1cjy_A           96 YVMDETLGTATFTVSSMKVGEKKEVPFIFNQV--TEMVL  132 (749)
T ss_dssp             SSSCEEEEEECCBSTTSCTTCCCCEEEEETTT--EEEEE
T ss_pred             CCCCceeEEEEEEHHHcCCCCceEEEEecCCC--ceEee
Confidence            98867999999999999777777999999875  44444

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.46  E-value=6.6e-13  Score=119.61  Aligned_cols=112  Identities=20%  Similarity=0.221  Sum_probs=83.6

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccC-CCCCCeeceEEEEEeccCCCCEEEEEEEECCCCC-
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-  520 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~-  520 (569)
                      .+.|.|+|++|++++   ..|.+||||+++ +.   ..+|++++ ++.||+|||+|.|.+.+. ...|.|+|||++ .+ 
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~~---~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~   83 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK-VQ---NVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIW   83 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEE-ET---TEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-SSC
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEE-ec---ceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-CCC
Confidence            579999999999885   267899999999 32   34565555 699999999999999864 567999999999 54 


Q ss_pred             CceeEEEEEecceeeecce------EeEEEEcC---CC-------CCeEEEEEEEEeec
Q 008334          521 KDYMGRCILTLTRVILEGE------YTDCFELD---GT-------KSGKLKLHLKWMPQ  563 (569)
Q Consensus       521 ~d~lG~~~i~l~~l~~~~~------~~~w~~L~---~~-------~~G~i~l~~~~~p~  563 (569)
                      +++||++.|+|+++.....      ...||.+.   +.       ..|++++.+.+..-
T Consensus        84 dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~  142 (167)
T 2cjs_A           84 DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELP  142 (167)
T ss_dssp             CEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECC
T ss_pred             CceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecC
Confidence            4799999999999865431      13445432   22       13557777777543

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.43  E-value=1.3e-12  Score=141.87  Aligned_cols=117  Identities=21%  Similarity=0.311  Sum_probs=98.7

Q ss_pred             cceEEEEEEEEeEcCCCCCC--CCCCCcEEEEEEeC---CCeeEeecccCCC-CCCeeceEEEEEeccCCCCEEEEEEEE
Q 008334          442 IRGVLSVTVILAENLPASDL--MGKADPYVVLTMKK---SETRNKTRVVNDC-LNPIWNQTFDFVVEDGLHDMLIAEVWD  515 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~--~g~~dpyv~v~l~~---~~~~~~T~~~~~t-~nP~w~e~f~f~v~~~~~~~l~i~V~d  515 (569)
                      ..+.|+|+|++|++|+..+.  .+.+||||++.+.+   ...++||++++++ .||+|||+|+|.+..+....|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            56899999999999998873  68899999999964   2357899999987 999999999999987666789999999


Q ss_pred             CCCCCC-ceeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEEe
Q 008334          516 HDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKWM  561 (569)
Q Consensus       516 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~  561 (569)
                      ++..++ ++||++.|+|.++..+   .+|++|.+.     ..+.|.|++++.
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCC---cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence            998865 7999999999998653   468888643     257888888775

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.40  E-value=2e-14  Score=152.09  Aligned_cols=125  Identities=18%  Similarity=0.288  Sum_probs=22.8

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCC---CCCeeccEEEEEEecCCCcEEEEEEEEC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINND---LNPIWNEHFEFIVEDESTQHLVVRIYDD  331 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t---~nP~wne~f~f~v~~~~~~~L~i~v~d~  331 (569)
                      +..|.|+|+|++|++|+++|     ||||+++++  +....||+++++|   .||+|||+|.|.+... ...|.++|||+
T Consensus         8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~--~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~   79 (483)
T 3bxj_A            8 RVDNVLKLWIIEARELPPKK-----RYYCELCLD--DMLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRD   79 (483)
T ss_dssp             EEEECC----------------------------------------------------CCEECC----------------
T ss_pred             eeccEEEEEEEEcCCcCCCC-----CCeEEEEEC--CeEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEec
Confidence            56799999999999999876     999999997  2346789999998   9999999999986543 46899999994


Q ss_pred             -C---CCCCCcceEEEEEEccccCCCceeEEEEEcccccccc-------------------CCCcceeEEEEEEEEEec
Q 008334          332 -E---GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ-------------------RDTKYRGQVHLELLYCPF  387 (569)
Q Consensus       332 -~---~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~-------------------~~~~~~G~l~l~l~~~p~  387 (569)
                       +   ..++|++||++.+++.++..+...+.|++|.......                   +.....|.|++.+.|.+.
T Consensus        80 ~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~  158 (483)
T 3bxj_A           80 SDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTM  158 (483)
T ss_dssp             ---------------------------CCEECC--------------------------------------CEEEEEEC
T ss_pred             CCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeee
Confidence             4   3578999999999999998888889999995432100                   112356999999999863

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.37  E-value=4.8e-14  Score=149.24  Aligned_cols=120  Identities=15%  Similarity=0.227  Sum_probs=24.9

Q ss_pred             ccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCC---CCCeeceEEEEEeccCCCCEEEEEEEEC-
Q 008334          441 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDC---LNPIWNQTFDFVVEDGLHDMLIAEVWDH-  516 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t---~nP~w~e~f~f~v~~~~~~~l~i~V~d~-  516 (569)
                      ...+.|+|+|++|++|+.++     ||||++++++ ....||+++++|   +||+|||+|+|.+... ...|.|+|||+ 
T Consensus         8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~-~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~   80 (483)
T 3bxj_A            8 RVDNVLKLWIIEARELPPKK-----RYYCELCLDD-MLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDS   80 (483)
T ss_dssp             EEEECC---------------------------------------------------CCEECC-----------------
T ss_pred             eeccEEEEEEEEcCCcCCCC-----CCeEEEEECC-eEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecC
Confidence            34688999999999999876     9999999975 346799999999   9999999999987533 57899999995 


Q ss_pred             CC---CC-CceeEEEEEecceeeecceEeEEEEcCCC---------------------------CCeEEEEEEEEeecCC
Q 008334          517 DT---FG-KDYMGRCILTLTRVILEGEYTDCFELDGT---------------------------KSGKLKLHLKWMPQPI  565 (569)
Q Consensus       517 ~~---~~-~d~lG~~~i~l~~l~~~~~~~~w~~L~~~---------------------------~~G~i~l~~~~~p~~~  565 (569)
                      +.   .+ +++||++.|+++++..+...++||+|.+.                           ..|.|++++.|.+...
T Consensus        81 d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~v  160 (483)
T 3bxj_A           81 DKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSI  160 (483)
T ss_dssp             --------------------------CCEECC--------------------------------------CEEEEEECCB
T ss_pred             CccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeeee
Confidence            42   33 47999999999999877777999999431                           2589999999998875


Q ss_pred             CC
Q 008334          566 YR  567 (569)
Q Consensus       566 ~~  567 (569)
                      .+
T Consensus       161 lP  162 (483)
T 3bxj_A          161 LP  162 (483)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.24  E-value=1.3e-11  Score=136.67  Aligned_cols=108  Identities=34%  Similarity=0.544  Sum_probs=94.2

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecC--CCCeEEeeecCCCCCCeeccEEEEEEecC-CCcEEEEEEEECCC
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDEG  333 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~v~d~~~  333 (569)
                      .+.|.|+|++|++|.++|..|.+||||++++.+.  ...+++|+++++++||+|||+|.|.+... ....|.++|||+|.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            5789999999999999999999999999999643  34678999999999999999999998754 34579999999999


Q ss_pred             CCCCcceEEEEEEccccCCCceeEEEEEcccc
Q 008334          334 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  365 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~  365 (569)
                      .++|++||++.+++.++.... .+.|+.+...
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~  281 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ  281 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred             ccccccccccccchhhhccCC-cccceeeccc
Confidence            999999999999999987654 4889998643

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.18  E-value=8.4e-11  Score=130.07  Aligned_cols=106  Identities=36%  Similarity=0.593  Sum_probs=91.1

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccC-CCCEEEEEEEECCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT  518 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~~~~l~i~V~d~~~  518 (569)
                      .+.|.|++.+|++|+..+..|.+||||++++..   ...+++|+++++++||.|||+|.|.+... ....|.|+|||++.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            478999999999999999999999999999942   23578999999999999999999998743 34569999999999


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      .++ ++||.+.++++++...+ ..+|+.|.+.
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~  281 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ  281 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred             ccccccccccccchhhhccCC-cccceeeccc
Confidence            876 79999999999987654 4899998653

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.10  E-value=6.3e-10  Score=122.96  Aligned_cols=116  Identities=23%  Similarity=0.362  Sum_probs=89.6

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--C--CeEEeeecCC-CCCCeeccE-EEEE-EecCCCcEEEEEEE
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--E--KTKKSKTINN-DLNPIWNEH-FEFI-VEDESTQHLVVRIY  329 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~--~~~kT~~~~~-t~nP~wne~-f~f~-v~~~~~~~L~i~v~  329 (569)
                      .+.|.|+|++|++|+.+    .+||||++.+...+  .  ++++|+++++ +.||+|||+ |.|. +..+....|+|+||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            48899999999999853    58999999997321  2  4678999875 699999998 9998 76565568999999


Q ss_pred             ECCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334          330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      |++    +++||++.++|..|..|.   .+++|....   ...-..+.|.+.+.+.-
T Consensus       725 D~d----ddfiG~~~ipL~~L~~Gy---R~vpL~~~~---g~~~~~atLfv~i~~~~  771 (816)
T 3qr0_A          725 EEN----GKFIGHRVMPLDGIKPGY---RHVPLRNES---NRPLGLASVFAHIVAKD  771 (816)
T ss_dssp             ETT----SCEEEEEEEESTTCCCEE---EEEEEECTT---SCEEEEEEEEEEEEEEE
T ss_pred             ecC----CCeeeEEEEEHHHcCCcc---eEEEEeCCC---CCCCCceEEEEEEEEEe
Confidence            985    789999999999998764   467775421   12223478888877653

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.10  E-value=4.3e-10  Score=124.93  Aligned_cols=116  Identities=16%  Similarity=0.321  Sum_probs=90.3

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecC--C-CCeEEeeecCC-CCCCeecc-EEEEE-EecCCCcEEEEEEEE
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--P-EKTKKSKTINN-DLNPIWNE-HFEFI-VEDESTQHLVVRIYD  330 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~-~~~~kT~~~~~-t~nP~wne-~f~f~-v~~~~~~~L~i~v~d  330 (569)
                      ...|.|+|++|++|+..    .+||||+|.+...  . .++++|+++.+ +.||+||| +|.|. +..+....|+|+|||
T Consensus       724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            35899999999999853    5899999999732  1 23578999865 69999999 69998 765556689999999


Q ss_pred             CCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334          331 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       331 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      ++    |++||++.++|..|..|.   .+++|....   ...-..|.|.+.+.+..
T Consensus       800 ~d----ddfiG~~~lpL~~L~~Gy---R~vpL~~~~---g~~l~~atLfv~i~~~~  845 (885)
T 3ohm_B          800 EG----GKFVGHRILPVSAIRSGY---HYVCLRNEA---NQPLCLPALLIYTEASD  845 (885)
T ss_dssp             TT----TEEEEEEEEETTTCCCEE---EEEEEECTT---SCEEEEEEEEEEEEEEE
T ss_pred             CC----ccEEeeEEEEHHHcCCCc---eEEEecCCC---CCccCceEEEEEEEEEe
Confidence            87    789999999999998764   457775321   12235789999988874

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.09  E-value=7.3e-10  Score=123.18  Aligned_cols=115  Identities=19%  Similarity=0.310  Sum_probs=88.6

Q ss_pred             ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecC---CCCeEEee-ecC-CCCCCeecc-EEEE-EEecCCCcEEEEEE
Q 008334          256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL---PEKTKKSK-TIN-NDLNPIWNE-HFEF-IVEDESTQHLVVRI  328 (569)
Q Consensus       256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~---~~~~~kT~-~~~-~t~nP~wne-~f~f-~v~~~~~~~L~i~v  328 (569)
                      ..|.|.|+|++|++|+.    +.+||||++.+...   ..+++||+ +++ ++.||+||| +|.| .+..+....|+|+|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46899999999999984    46899999999631   12468999 775 569999999 6999 78666666899999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      ||++    +++||.+.+++..|.+|.   .|++|....   ...-..+.|.+.+.+
T Consensus       752 ~D~d----~d~iG~~~ipl~~L~~G~---r~v~L~~~~---g~~~~~~~Lfv~i~~  797 (799)
T 2zkm_X          752 MEEG----NKFLGHRIIPINALNSGY---HHLCLHSES---NMPLTMPALFIFLEM  797 (799)
T ss_dssp             EETT----TEEEEEEEEEGGGBCCEE---EEEEEECTT---CCEEEEEEEEEEEEE
T ss_pred             EEeC----CCccceEeeehhhcCCCc---EEEeccCCC---CCCCCceEEEEEEEE
Confidence            9986    789999999999998753   577775321   111235777777765

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.06  E-value=1e-09  Score=121.94  Aligned_cols=110  Identities=20%  Similarity=0.312  Sum_probs=87.4

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC----CeeEeec-ccCC-CCCCeece-EEEE-EeccCCCCEEEEEE
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS----ETRNKTR-VVND-CLNPIWNQ-TFDF-VVEDGLHDMLIAEV  513 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~----~~~~~T~-~~~~-t~nP~w~e-~f~f-~v~~~~~~~l~i~V  513 (569)
                      ..+.|.|+|++|++|+.    +.+||||+|.+.+.    ..+++|+ ++++ +.||+||| +|+| .+..+.-+.|.|+|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46799999999999985    46899999999541    1367899 7764 69999999 6999 88766667899999


Q ss_pred             EECCCCCCceeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEEe
Q 008334          514 WDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKWM  561 (569)
Q Consensus       514 ~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~  561 (569)
                      ||++   +++||++.|+++++..+   .+|++|.+.     ..+.|.|++++.
T Consensus       752 ~D~d---~d~iG~~~ipl~~L~~G---~r~v~L~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          752 MEEG---NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             EETT---TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             EEeC---CCccceEeeehhhcCCC---cEEEeccCCCCCCCCceEEEEEEEEE
Confidence            9987   68999999999998543   457777543     246777777764

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.05  E-value=1e-09  Score=121.86  Aligned_cols=110  Identities=22%  Similarity=0.298  Sum_probs=88.5

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC--C--eeEeecccCC-CCCCeece-EEEEE-eccCCCCEEEEEEEE
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS--E--TRNKTRVVND-CLNPIWNQ-TFDFV-VEDGLHDMLIAEVWD  515 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~--~--~~~~T~~~~~-t~nP~w~e-~f~f~-v~~~~~~~l~i~V~d  515 (569)
                      ...|.|+|++|++|+..    .+||||+|.+.+.  .  .+++|+++++ +.||+||| +|.|. |..+....|.|+|||
T Consensus       724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            45899999999999853    5899999999751  1  3579999876 69999999 69998 776666789999999


Q ss_pred             CCCCCCceeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEEee
Q 008334          516 HDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKWMP  562 (569)
Q Consensus       516 ~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~p  562 (569)
                      ++   +|+||++.++|+.+..+   .++++|.+.     ..|.|.+.+.+..
T Consensus       800 ~d---ddfiG~~~lpL~~L~~G---yR~vpL~~~~g~~l~~atLfv~i~~~~  845 (885)
T 3ohm_B          800 EG---GKFVGHRILPVSAIRSG---YHYVCLRNEANQPLCLPALLIYTEASD  845 (885)
T ss_dssp             TT---TEEEEEEEEETTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             CC---ccEEeeEEEEHHHcCCC---ceEEEecCCCCCccCceEEEEEEEEEe
Confidence            87   68999999999998544   456777543     2578888888774

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.03  E-value=1.9e-09  Score=119.19  Aligned_cols=109  Identities=17%  Similarity=0.272  Sum_probs=87.7

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---C--eeEeecccCC-CCCCeeceE-EEEE-eccCCCCEEEEEEE
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---E--TRNKTRVVND-CLNPIWNQT-FDFV-VEDGLHDMLIAEVW  514 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~--~~~~T~~~~~-t~nP~w~e~-f~f~-v~~~~~~~l~i~V~  514 (569)
                      .+.|.|+|++|++|+..    .+||||+|.+.+.   .  .+++|+++++ +.||+|||+ |+|. +..+.-..|.|+||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            47899999999999853    5899999999741   1  4679999876 699999998 9998 87666678999999


Q ss_pred             ECCCCCCceeEEEEEecceeeecceEeEEEEcCCCC-----CeEEEEEEEEe
Q 008334          515 DHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTK-----SGKLKLHLKWM  561 (569)
Q Consensus       515 d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~~  561 (569)
                      |++   +|+||++.++|+++..+   .++++|.+..     .+.|.+.+...
T Consensus       725 D~d---ddfiG~~~ipL~~L~~G---yR~vpL~~~~g~~~~~atLfv~i~~~  770 (816)
T 3qr0_A          725 EEN---GKFIGHRVMPLDGIKPG---YRHVPLRNESNRPLGLASVFAHIVAK  770 (816)
T ss_dssp             ETT---SCEEEEEEEESTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             ecC---CCeeeEEEEEHHHcCCc---ceEEEEeCCCCCCCCceEEEEEEEEE
Confidence            985   58999999999998654   4567775432     46777777665

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.03  E-value=6.7e-09  Score=85.61  Aligned_cols=113  Identities=14%  Similarity=0.225  Sum_probs=86.5

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCe--eEee-cccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET--RNKT-RVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT  518 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~--~~~T-~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~  518 (569)
                      ....|+|...++.--+..+.....||||.+.+.....  ..+| ...++|..|.||++|.-.+.+  ...|+|.|++...
T Consensus         4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~   81 (126)
T 1yrk_A            4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE   81 (126)
T ss_dssp             CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT
T ss_pred             cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC
Confidence            3477888887766433322234689999999863111  2244 666789999999999999985  5679999997654


Q ss_pred             CCCceeEEEEEecceeee-----cceEeEEEEcCCCCCeEEEEEEEEe
Q 008334          519 FGKDYMGRCILTLTRVIL-----EGEYTDCFELDGTKSGKLKLHLKWM  561 (569)
Q Consensus       519 ~~~d~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~i~l~~~~~  561 (569)
                         ++++.|+|+++++..     ++..+-|+.|+.  .|+|++.++|.
T Consensus        82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP--~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP--QAKVLMSVQYF  124 (126)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--SCEEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEe
Confidence               899999999999984     346689999988  79999999985

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.95  E-value=1.5e-08  Score=83.58  Aligned_cols=113  Identities=12%  Similarity=0.224  Sum_probs=83.7

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC-CCeEEe-eecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-EKTKKS-KTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  334 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT-~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~  334 (569)
                      .+-|+|.+.++.--.-.......||||.+.+.... ....+| .+.+.|..|+|||+|.-.+++  ...|.+.|++... 
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~-   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE-   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT-
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC-
Confidence            35678887665532211222357999999997211 112355 667889999999999888864  5689999997554 


Q ss_pred             CCCcceEEEEEEccccC-----CCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          335 QSSELIGCAQVRLCELE-----PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       335 ~~d~~iG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                         ++++.|.+++.+|.     .+...+.|+.|          ++.|.|++.+.|+
T Consensus        82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdL----------eP~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDL----------QPQAKVLMSVQYF  124 (126)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC----------BSSCEEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhccCCCceEEEEec----------ccCcEEEEEEEEe
Confidence               89999999999996     45677999998          4589999999986

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.93  E-value=9.5e-09  Score=85.83  Aligned_cols=114  Identities=14%  Similarity=0.248  Sum_probs=87.3

Q ss_pred             cceEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEeCCC--eeEee-cccCCCCCCeeceEEEEEeccCCCCEEEEEEEECC
Q 008334          442 IRGVLSVTVILAENLPASD-LMGKADPYVVLTMKKSE--TRNKT-RVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD  517 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~-~~g~~dpyv~v~l~~~~--~~~~T-~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~  517 (569)
                      ..+.|+|.+.+..--+... .....||||.|.+....  ...+| ...++|..|.||++|.-.+.+  ...|+|.|++..
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a   85 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKN   85 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSS
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCC
Confidence            4577888887776544332 13358999999986321  12555 555779999999999998885  567999999655


Q ss_pred             CCCCceeEEEEEecceeeec-----ceEeEEEEcCCCCCeEEEEEEEEee
Q 008334          518 TFGKDYMGRCILTLTRVILE-----GEYTDCFELDGTKSGKLKLHLKWMP  562 (569)
Q Consensus       518 ~~~~d~lG~~~i~l~~l~~~-----~~~~~w~~L~~~~~G~i~l~~~~~p  562 (569)
                      .   ++++.|+|++++|..+     +..+-|+.|+.  .|+|++.++|.-
T Consensus        86 ~---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP--~Gkl~v~i~~~~  130 (138)
T 2enj_A           86 V---DLISETTVELYSLAERCRKNNGKTEIWLELKP--QGRMLMNARYFL  130 (138)
T ss_dssp             C---SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS--SCEEEEEEEECC
T ss_pred             C---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEEE
Confidence            4   8999999999999843     45689999988  799999999864

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.84  E-value=2.3e-08  Score=83.55  Aligned_cols=113  Identities=17%  Similarity=0.318  Sum_probs=83.9

Q ss_pred             cEEEEEEEEEeeccccCC-CCCCCCcEEEEEEecCC-CCeEEe-eecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCC
Q 008334          257 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLP-EKTKKS-KTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  333 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~-~~~~kT-~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~  333 (569)
                      .+-|+|.+.++.--+-.. .....||||.+.+.... ....+| .+.+.|..|+|||+|.-.++  ....|.|.|++...
T Consensus         9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~--~Gr~l~i~Vfh~a~   86 (138)
T 2enj_A            9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN--KGRVMQIIVKGKNV   86 (138)
T ss_dssp             CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC--SSCEEEEEEECSSC
T ss_pred             CcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE--CCeEEEEEEEcCCC
Confidence            467888887665433221 12357999999997310 122556 55677999999999988776  45689999996443


Q ss_pred             CCCCcceEEEEEEccccC-----CCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          334 IQSSELIGCAQVRLCELE-----PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                          ++++.|.+++.+|.     .+...+.|+.|          ++.|.|++.+.|+
T Consensus        87 ----~fVAn~tV~~edL~~~ck~~~g~~e~WvdL----------eP~Gkl~v~i~~~  129 (138)
T 2enj_A           87 ----DLISETTVELYSLAERCRKNNGKTEIWLEL----------KPQGRMLMNARYF  129 (138)
T ss_dssp             ----SCCEEEEEESHHHHHHHHHTTTCEEEEEEC----------BSSCEEEEEEEEC
T ss_pred             ----CeeeEEEEEHHHHHhhhccCCCceEEEEec----------ccCcEEEEEEEEE
Confidence                89999999999996     45677999998          4589999999996

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=93.26  E-value=1.5  Score=39.91  Aligned_cols=55  Identities=22%  Similarity=0.256  Sum_probs=39.2

Q ss_pred             CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEECCCCC----CCcceEEEEEEc
Q 008334          293 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQ----SSELIGCAQVRL  347 (569)
Q Consensus       293 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~~~~~----~d~~iG~~~i~l  347 (569)
                      ..++|.+...+.+|.|+|++.+.+...  ....|.|.+++.....    ....+|.+.+||
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL  137 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKL  137 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEES
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEc
Confidence            357888888899999999999988744  4568999998865321    123456555554

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=91.11  E-value=2  Score=36.94  Aligned_cols=126  Identities=11%  Similarity=0.121  Sum_probs=85.0

Q ss_pred             CccEEEEEEEEEeeccccC-CCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC-------CCcEEEE
Q 008334          255 KPVGTLEVKLVQAKGLTNK-DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-------STQHLVV  326 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~-d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-------~~~~L~i  326 (569)
                      +..+.+.|+|.++.--+.. ...+..+|...+.+.-..-+.+.|.+.. +.+|.+|-+-.|.+...       .+..+.+
T Consensus        15 ~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l   93 (156)
T 2yrb_A           15 RGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL   93 (156)
T ss_dssp             SSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred             CCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence            4568899999887732211 0123457887777765556777787665 88999999888887532       2447889


Q ss_pred             EEEECCCCCCCcceEEEEEEccccCCCce-eEEEEEccccccccCCC-cceeEEEEEEEEEe
Q 008334          327 RIYDDEGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVKDLDVQRDT-KYRGQVHLELLYCP  386 (569)
Q Consensus       327 ~v~d~~~~~~d~~iG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~-~~~G~l~l~l~~~p  386 (569)
                      +++.... ..-+.+|.+.+++.++...+. .....+|...    .++ ..-|.|.+.+++..
T Consensus        94 ELhqa~g-~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~----~g~~~~~G~LeywiRL~~  150 (156)
T 2yrb_A           94 EVHQAYS-TEYETIAACQLKFHEILEKSGRIFCTASLIGT----KGDIPNFGTVEYWFRLRV  150 (156)
T ss_dssp             EEEEECS-SCEEEEEEEEECCSHHHHCCSCEEEEEEECBS----SSCCTTSEEEEEEEEEEE
T ss_pred             EEEEeeC-CCceEEEEEEEEhHHhhCcCCceEEEEEEEcC----CCCcceEEEEEEEEEEec
Confidence            9988753 345789999999999864332 3344455421    122 47899999998763

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=87.16  E-value=3.2  Score=46.71  Aligned_cols=89  Identities=16%  Similarity=0.176  Sum_probs=62.0

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCe----eEeecccCCCCCCeeceEEEEEec---cCCCCEEEEEEEE
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWD  515 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~----~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~l~i~V~d  515 (569)
                      ...+.|+|..+.+++..   ...+-||.+.+-++.+    ...|..+....+|.|||-++|++.   -|..+.|.|+||+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            46899999999998754   3457788877643322    234554445778999999999875   3577899999999


Q ss_pred             CCCC--C----------C-ceeEEEEEeccee
Q 008334          516 HDTF--G----------K-DYMGRCILTLTRV  534 (569)
Q Consensus       516 ~~~~--~----------~-d~lG~~~i~l~~l  534 (569)
                      ....  +          . ..||.+.+++-+-
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCT
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECC
Confidence            5321  1          1 3899999999763

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=85.53  E-value=14  Score=33.52  Aligned_cols=56  Identities=13%  Similarity=0.181  Sum_probs=42.9

Q ss_pred             eeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCCC-----CceeEEEEEecce
Q 008334          478 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG-----KDYMGRCILTLTR  533 (569)
Q Consensus       478 ~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~~-----~d~lG~~~i~l~~  533 (569)
                      ..++|.+.+.+.+|.|+|++.+.+...  ....|.+++++.....     ...+|.+-+||-+
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            357888888899999999999998733  4568999998765321     1378999999864

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=84.48  E-value=5.2  Score=34.31  Aligned_cols=119  Identities=16%  Similarity=0.194  Sum_probs=76.0

Q ss_pred             cceEEEEEEEEeEcCCCCC--CCCCCCcEEEEEEe-CCCeeEeecccCCCCCCeeceEEEEEecc-------CCCCEEEE
Q 008334          442 IRGVLSVTVILAENLPASD--LMGKADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDFVVED-------GLHDMLIA  511 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~--~~g~~dpyv~v~l~-~~~~~~~T~~~~~t~nP~w~e~f~f~v~~-------~~~~~l~i  511 (569)
                      ..+.+.++|.++. +.+..  ..+..+|..-..+. -.-+.+.|.++. ..+|.+|-+-.|.|..       .....+.+
T Consensus        16 gEnlfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l   93 (156)
T 2yrb_A           16 GENLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL   93 (156)
T ss_dssp             SCEEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred             CCcEEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence            4578899988886 22110  11233554444432 123456677765 7899999998888852       12346888


Q ss_pred             EEEECCCCCCceeEEEEEecceeeecc-eEeEEEEcCCC-----CCeEEEEEEEEee
Q 008334          512 EVWDHDTFGKDYMGRCILTLTRVILEG-EYTDCFELDGT-----KSGKLKLHLKWMP  562 (569)
Q Consensus       512 ~V~d~~~~~~d~lG~~~i~l~~l~~~~-~~~~w~~L~~~-----~~G~i~l~~~~~p  562 (569)
                      ++.......-..||++.|++.+++... ......+|.+.     .-|.|...+.++.
T Consensus        94 ELhqa~g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~~  150 (156)
T 2yrb_A           94 EVHQAYSTEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRV  150 (156)
T ss_dssp             EEEEECSSCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEEE
T ss_pred             EEEEeeCCCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEec
Confidence            888764322258999999999998654 34555566543     4688888877753

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=82.44  E-value=6.9  Score=44.41  Aligned_cols=90  Identities=14%  Similarity=0.151  Sum_probs=62.9

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCe----eEeecccCCCCCCeeceEEEEEec---cCCCCEEEEEEEE
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWD  515 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~----~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~l~i~V~d  515 (569)
                      ...++|+|..+.+++... ....+-||.+.+-++.+    ..+|+.+ ...+|.|||-.+|.+.   -|..+.|.|+||+
T Consensus       354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~  431 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRV-PCSNPRWNEWLNYDIYIPDLPRAARLCLSICS  431 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCC-CTTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred             CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceecccc-CCCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence            468999999999886433 23457788888754332    2344433 3467889999999875   3577899999998


Q ss_pred             CCCC----CC-ceeEEEEEeccee
Q 008334          516 HDTF----GK-DYMGRCILTLTRV  534 (569)
Q Consensus       516 ~~~~----~~-d~lG~~~i~l~~l  534 (569)
                      ....    .. ..||.++++|-+-
T Consensus       432 ~~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          432 VKGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCCCC-------CCEEEEEESBCT
T ss_pred             ecCccCcccccceeEEeeeeeEcc
Confidence            6542    12 3799999999864

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=80.25  E-value=7.6  Score=43.66  Aligned_cols=91  Identities=18%  Similarity=0.257  Sum_probs=60.9

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEe--c-CCCcEEEEEEEE
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--D-ESTQHLVVRIYD  330 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~L~i~v~d  330 (569)
                      ...+.|+|.++.++...   ...+-||.+.+-.++.   ....|+.+....+|.|||...|.+.  + +....|.|.||+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            46789999999998743   3467788877742221   2334554555678999999888765  2 245689999999


Q ss_pred             CCCC--C----------CCcceEEEEEEcccc
Q 008334          331 DEGI--Q----------SSELIGCAQVRLCEL  350 (569)
Q Consensus       331 ~~~~--~----------~d~~iG~~~i~l~~l  350 (569)
                      ....  +          .+..+|.+.+++-+-
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCT
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECC
Confidence            6321  1          245899999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	569
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-26
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	3e-22
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	1e-22
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	4e-22
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-21
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-17
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	6e-21
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	7e-15
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	9e-21
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	2e-19
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	6e-19
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-16
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	4e-16
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-15
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	6e-16
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	6e-15
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-15
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	4e-13
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	2e-15
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	7e-15
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-15
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-15
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-15
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-13
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-14
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	4e-14
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	3e-14
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	3e-13
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	4e-14
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	1e-13
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	7e-14
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	9e-12
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	2e-13
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	3e-10
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	8e-12
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	2e-11
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	2e-10
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	6e-09

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  102 bits (256), Expect = 1e-26
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 10/138 (7%)

Query: 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 314
            P GTLEV LV AKGL + D +   DPY  L  R   +K+  ++ +     P WNE F F
Sbjct: 7   GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMG--TTPEWNETFIF 64

Query: 315 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-GKVKDVWLKLVKDLDVQRDTK 373
            V + +   L  +I+D +     + +G A + L  +   G +      +VKD       +
Sbjct: 65  TVSEGT-TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE------E 117

Query: 374 YRGQVHLELLYCPFGMEN 391
           Y+G++ + L + P G  +
Sbjct: 118 YKGEIWVALSFKPSGPSS 135

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.6 bits (224), Expect = 3e-22
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE 502
            G L V ++ A+ L  +D +   DPYV LT +  + +           P WN+TF F V 
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQK-SNVAEGMGTTPEWNETFIFTVS 67

Query: 503 DGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILEGEYTDCF---ELDGTKSGKLKLHL 558
           +G  ++   +++D D   +D  +G   + L  V +EG           D    G++ + L
Sbjct: 68  EGTTELKA-KIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVAL 126

Query: 559 KWMPQ 563
            + P 
Sbjct: 127 SFKPS 131

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (226), Expect = 1e-22
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 12/132 (9%)

Query: 258 GTLEVKLVQAKGLTN---KDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEF 314
               V +++A  +T     D++   DPY  LF+   P+  K+++  NND+NP+WNE FEF
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 315 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKY 374
           I++      L + +  D      E +G A   +  ++ G+ K+V            +   
Sbjct: 63  ILDPNQENVLEITLM-DANYVMDETLGTATFTVSSMKVGEKKEVPFIF--------NQVT 113

Query: 375 RGQVHLELLYCP 386
              + + L    
Sbjct: 114 EMVLEMSLEVAS 125

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (222), Expect = 4e-22
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 446 LSVTVILAENLP---ASDLMGKADPYVVLTM-KKSETRNKTRVVNDCLNPIWNQTFDFVV 501
            +V V+ A  +      D++   DPYV L +    ++R +TR  N+ +NP+WN+TF+F++
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 502 EDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWM 561
           +    ++L   + D +    + +G    T++ + +  +    F  +      L++ L+  
Sbjct: 65  DPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVA 124

Query: 562 P 562
            
Sbjct: 125 S 125

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.9 bits (217), Expect = 3e-21
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV- 316
             L V ++QA  L   D+ G SDPY  +F+ P  +K  ++K     LNP++NE F F V 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 317 -EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
             +   + LV+ +YD +     ++IG  +V +  ++ G V + W  L
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.5 bits (190), Expect = 2e-17
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDFVV 501
              L V +I A  LPA D+ G +DPYV +  +   + + +T+V    LNP++N+ F F V
Sbjct: 33  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92

Query: 502 --EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 547
              +     L+  V+D D F K D +G   + +  V       +  +L 
Sbjct: 93  PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.4 bits (213), Expect = 6e-21
 Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 9/130 (6%)

Query: 253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 312
           ++K VG L+VK+++A  L   D  GKSDP+ +L +        ++ T+  +LNP WN+ F
Sbjct: 1   DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN---DRLQTHTVYKNLNPEWNKVF 57

Query: 313 EFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDT 372
            F ++D     L V ++D++G +  + +G   + L  +  G+     LK         + 
Sbjct: 58  TFPIKDI-HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL-----EQ 111

Query: 373 KYRGQVHLEL 382
            ++G ++LE+
Sbjct: 112 AFKGVIYLEM 121

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 7e-15
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 11/124 (8%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 503
           G+L V V+ A +L A+D  GK+DP+ +L +     R +T  V   LNP WN+ F F ++D
Sbjct: 6   GILQVKVLKAADLLAADFSGKSDPFCLLELGN--DRLQTHTVYKNLNPEWNKVFTFPIKD 63

Query: 504 GLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL-----DGTKSGKLKLH 557
               + +  V+D D     D++G+  + L    +     +C+ L     +    G + L 
Sbjct: 64  IHDVLEV-TVFDEDGDKPPDFLGKVAIPLLS--IRDGQPNCYVLKNKDLEQAFKGVIYLE 120

Query: 558 LKWM 561
           +  +
Sbjct: 121 MDLI 124

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.3 bits (213), Expect = 9e-21
 Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 6/116 (5%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVV---LTMKKSETRNKTRVVNDCLNPIWNQTFDF 499
           R VL V V  A+NL   D  G +DPYV    +   KSE++ KT+ +   LNP WN+TF F
Sbjct: 14  REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 73

Query: 500 VVEDGLHD-MLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGK 553
            +++   D  L  E+WD D   + D+MG     ++ +   G     F+L   + G+
Sbjct: 74  QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQEEGE 128

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 82.4 bits (203), Expect = 2e-19
 Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEF- 314
             L V +  AK L   D  G SDPY  L + P P  E  +K+KTI   LNP WNE F F 
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 315 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
           + E +  + L V I+D +    ++ +G     + EL+   V D W KL
Sbjct: 75  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKL 121

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 6e-19
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 9/106 (8%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 499
              L VT++ A++LP+ +     +PYV +     +  + + +T+ V   L P WNQTF +
Sbjct: 13  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 72

Query: 500 VV---EDGLHDMLIAEVWDHDTFGK---DYMGRCILTLTRVILEGE 539
                 +    ML   +WD     +   +++G  ++ L   +L+ E
Sbjct: 73  SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 118

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (182), Expect = 1e-16
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK--KSKTINNDLNPIWNEHFEFI 315
             L V ++ AK L +++     +PY  ++  P        ++KT+   L P WN+ F + 
Sbjct: 14  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73

Query: 316 V---EDESTQHLVVRIYDDEGIQSS--ELIGCAQVRLCELEPGKVKDVWLKL 362
                +   + L + ++D   ++    E +G   + L           W KL
Sbjct: 74  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 124

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.2 bits (179), Expect = 4e-16
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDF 499
              L+V V+ A +LP SD+ G +DPYV + +    K  ++ KT V     N ++N+ F F
Sbjct: 14  TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 73

Query: 500 VV--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 534
            +  E      +   V D +   + + +GR +L  T  
Sbjct: 74  DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.7 bits (175), Expect = 1e-15
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 315
            TL V +++A+ L   D+ G SDPY  + +    ++  K KT       N ++NE F F 
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 316 VEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 364
           +  ES +   +   + D E    +E+IG   +       G     W ++  
Sbjct: 75  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEICD 123

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.0 bits (178), Expect = 6e-16
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT-----------KKSKTINNDLNP 306
           G L + ++QA+ L  +D  G SDP+  +++ P   +            +++K +   LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 307 IWNEHFEFIV---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
            WN+   +     E    + L V ++D +   S++ +G   + L           W  L
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.9 bits (170), Expect = 6e-15
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 16/120 (13%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM------------KKSETRNKTRVVNDCLN 490
            G L + ++ A NL   D  G +DP+V + +              +E + +T+ V   LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 491 PIWNQTFDFVV---EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 546
           P WNQT  +     E  +   L   VWD+D F   D++G  ++ L+           + L
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 1e-15
 Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVE 317
             L++ ++ AK   NK       PY  + V     ++KK++  NN  +P W +    IV 
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNTNSPKWKQPLTVIVT 62

Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGKVKDVWLKLVKDLDVQRDTKY 374
                 L  R++  + ++S  L+G A + + E       K+++V + L +    +  T+ 
Sbjct: 63  P--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTL-QLGGDKEPTET 119

Query: 375 RGQVHLEL 382
            G + + L
Sbjct: 120 IGDLSICL 127

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 4e-13
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVE 502
           +  L +TVI A+            PYV +T+     + +    N+  +P W Q    +V 
Sbjct: 5   KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTE--KCNNTNSPKWKQPLTVIVT 62

Query: 503 DGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVILE 537
                     VW H T   D  +G   L +   +  
Sbjct: 63  PVSKLHF--RVWSHQTLKSDVLLGTAALDIYETLKS 96

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 2e-15
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 258 GTLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 316
               V + +A+GL   D     SDPY  + + P  +   K++ +   L+P ++E F F  
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 317 ---EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK-DVWLKLVK 364
                     L   I   +     ++IG   + L  +E  + K  +  +++ 
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 7e-15
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 443 RGVLSVTVILAENLPASDLMGK-ADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDFV 500
           R    V +  A  LPA D     +DPY+ +T + + + + KTRV+   L+P +++TF F 
Sbjct: 21  RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80

Query: 501 V---EDGLHDMLIAEVWDHDTFGKD-YMGRCILTLTRVIL-EGEYTDCFELDGTKS 551
                      L   +   D F +D  +G  ++ L+ + L EG+     E+    S
Sbjct: 81  GIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPS 136

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.2 bits (171), Expect = 3e-15
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 255 KPVGTLEVKLVQAKGL--TNKDLIGKSDPYAVLFVRPLPEKTKKSKT---INNDLNPIWN 309
           +P   L V+++  + L   NK+     DP  ++ +  +   T   +T    NN  NP W+
Sbjct: 2   RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60

Query: 310 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
             FEF V       +   + D +    ++ IG + +    L+ G      + L
Sbjct: 61  MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHL 110

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.2 bits (171), Expect = 3e-15
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 446 LSVTVILAENLP--ASDLMGKADPYVVLTM---KKSETRNKTRVV-NDCLNPIWNQTFDF 499
           L V +I  + LP    +     DP V++ +    +     +T V+ N+  NP W+  F+F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 500 VVEDGLHDMLIAEVWDHDTFGKDY-MGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHL 558
            V      ++   V D+D+  K+  +G+  +    +     +      +G +     L +
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFV 125

Query: 559 K 559
           K
Sbjct: 126 K 126

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.6 bits (172), Expect = 5e-15
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRN---KTRVVNDCLNPIWNQTFDF 499
            G L+V ++ A+NL   D+ G +DPYV + + ++  R    KT +  + LNP +N++F F
Sbjct: 24  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83

Query: 500 VV--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGE 539
            V  E      ++  V D+D  GK D +G+  +       E  
Sbjct: 84  EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELR 126

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.0 bits (160), Expect = 2e-13
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKT--KKSKTINNDLNPIWNEHFEFI 315
           G L V +++AK L   D+ G SDPY  + +    ++   KK+    N LNP +NE F F 
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 316 VEDESTQH--LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 367
           V  E  Q   +VV + D + I  ++ IG   V             W  ++ +  
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE--LRHWSDMLANPR 136

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.9 bits (165), Expect = 2e-14
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 499
           +G L V +I   +L A D  G +DP+V L +      + ++KT++    LNP +N+ F +
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73

Query: 500 VV--EDGLHDMLIAEVWDHDTFGK-DYMGRCIL 529
            +   D     L   VWD+D     DY+G C L
Sbjct: 74  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL 106

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.5 bits (164), Expect = 4e-14
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLNPIWNEHFEFI 315
           G L V +++   L   D  G SDP+  L+++P   K  K  ++     LNP +NE F + 
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74

Query: 316 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 367
           +   D + + L + ++D +  +S++ IG  Q+ +     G+    W + +K+ D
Sbjct: 75  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKD 126

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 67.6 bits (164), Expect = 3e-14
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 15/135 (11%)

Query: 440 VIIRGVLSVTVILAENLPASDLM-----------GKADPYVVLTMKKSETRNKTRVVNDC 488
           V+  G+L + +  A +L  +                 DPY+ L +  S    +T      
Sbjct: 2   VVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG-QTATKQKT 60

Query: 489 LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRVILEGEYTDCFELD 547
            +P W+  F   V +G    L   V+     G  D++  C +    ++  G       +D
Sbjct: 61  NSPAWHDEFVTDVCNGRKIEL--AVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118

Query: 548 GTKSGKLKLHLKWMP 562
               GK+ + +    
Sbjct: 119 LEPEGKVYVIIDLSG 133

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 64.9 bits (157), Expect = 3e-13
 Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 27/142 (19%)

Query: 258 GTLEVKLVQAKGLTNKDL-----------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNP 306
           G L++K+ +A  L                    DPY  L V     +  ++ T     +P
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD--SRIGQTATKQKTNSP 63

Query: 307 IWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLKLVK 364
            W++ F   V +     L V      G    + +    ++  EL     +  + W+ L  
Sbjct: 64  AWHDEFVTDVCNGRKIELAVFHDAPIGYD--DFVANCTIQFEELLQNGSRHFEDWIDLEP 121

Query: 365 DLDVQRDTKYRGQVHLELLYCP 386
                      G+V++ +    
Sbjct: 122 ----------EGKVYVIIDLSG 133

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.5 bits (164), Expect = 4e-14
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 499
            G+L+VT+I A NL A DL G +DPYV  ++    +   + KT +  + LNP +N+   F
Sbjct: 19  AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 78

Query: 500 VV--EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 538
            V  E   +  L   V D+D  G  + +G C +        G
Sbjct: 79  DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG 120

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.4 bits (161), Expect = 1e-13
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFI 315
           G L V +++A  L   DL G SDPY    +     + KK KT    N LNP +NE   F 
Sbjct: 20  GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79

Query: 316 V--EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 364
           V  E      L + + D + I  +E+IG  +V     +P   ++ W +++ 
Sbjct: 80  VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLA 129

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 7e-14
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 6/108 (5%)

Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK-KSKTINNDLNPIWNEHFEFIV 316
             L V  ++A      +  G  D Y    V       + ++      L+  W E     +
Sbjct: 26  AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 317 --EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362
             E+  T  L + +   +      + G  ++ L           W +L
Sbjct: 83  AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 9e-12
 Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 10/117 (8%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTM--KKSETRNKTRVVNDCLNPIWNQTFDFV 500
           +  L VT + A      +  G  D YV  ++  +      +T +    L+  W +     
Sbjct: 25  KAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP 81

Query: 501 VEDGLHDMLIAEVWDHDTFG---KDYMGRCILTLTRVILEGEYTDCFELD--GTKSG 552
           + +         +              G   L L    +        EL   G  SG
Sbjct: 82  LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPSSG 138

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.5 bits (159), Expect = 2e-13
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 503
            +L V V  A+   A     K + YV L ++    ++ T  V     P W Q F F +  
Sbjct: 2   SLLCVGVKKAKFDGA---QEKFNTYVTLKVQN--VKSTTIAVR-GSQPSWEQDFMFEINR 55

Query: 504 GLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGE 539
               + + EVW+        +G   + L  +    E
Sbjct: 56  LDLGLTV-EVWNKGLIWDTMVGTVWIPLRTIRQSNE 90

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.9 bits (134), Expect = 3e-10
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 12/121 (9%)

Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
           L V + +AK    ++   K + Y  L V+      K +        P W + F F +   
Sbjct: 4   LCVGVKKAKFDGAQE---KFNTYVTLKVQ----NVKSTTIAVRGSQPSWEQDFMFEINRL 56

Query: 320 STQHLVVRIYDDEGIQSSELIGCAQVRLCEL--EPGKVKDVWLKLVKDLDVQRDTKYRGQ 377
               L V ++ ++G+    ++G   + L  +     +    WL L     +  D++  G 
Sbjct: 57  -DLGLTVEVW-NKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQA-IMADSEICGT 113

Query: 378 V 378
            
Sbjct: 114 K 114

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.4 bits (145), Expect = 8e-12
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVL-TMKKSETRNKTRVVNDCLNPIWNQTFDFVV 501
              L V ++ A +LPA D  G +DPYV +  +   + + +T+V    LNPI+N+TF F V
Sbjct: 17  SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 76

Query: 502 --EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSG 552
              +     L   V+D D F + D +G+ +L     + E         D  + G
Sbjct: 77  PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG 130

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.0 bits (142), Expect = 2e-11
 Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 5/121 (4%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVE 502
           L ++    E          + P+  + MK    ++           + P W  TFD  + 
Sbjct: 5   LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY 64

Query: 503 DGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMP 562
           +G    ++      D   +  +G  +L        G+     +L      K+ + +++  
Sbjct: 65  EGRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQYFL 122

Query: 563 Q 563
           +
Sbjct: 123 E 123

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 2e-10
 Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 22/116 (18%)

Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMK------KSETRNKTRVVNDCLNPIWNQT--F 497
           LS+TVI  + L           YV + +       K   R K     + +NP+W +    
Sbjct: 3   LSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58

Query: 498 DFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLT-------RVILEGEYTDCFEL 546
              +       L   V +       ++G  I+ +         + L  E      +
Sbjct: 59  FEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGYHHLCLHSESNMPLTM 111

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 6e-09
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 15/102 (14%)

Query: 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKT-----INNDLNPIWNEH-- 311
           TL + ++  + L+ +        Y  + +  LP   K+          N +NP+W E   
Sbjct: 2   TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPF 57

Query: 312 FEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
               +       L V + ++      + +G   + +  L  G
Sbjct: 58  VFEKILMPELASLRVAVMEEGN----KFLGHRIIPINALNSG 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	569
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.86
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.86
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.84
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.84
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.81
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.8
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.78
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.78
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.78
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.78
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.77
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.76
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.76
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.75
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.74
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.74
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.73
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.72
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.71
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.7
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.7
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.69
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.69
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.68
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.68
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.68
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.68
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.67
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.66
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.66
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.66
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.65
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.64
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.63
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.6
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.59
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.59
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.55
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.34
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.34
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	93.75
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	87.04

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=2e-21  Score=168.26  Aligned_cols=125  Identities=34%  Similarity=0.574  Sum_probs=107.9

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecC-CCCCCeeccEEEEEEecCCCcEEEEEEEECCC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  333 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~  333 (569)
                      .+.|+|+|+|++|++|++.+..|++||||+++++   .+..+|++++ ++.||+|||+|.|.+.+. ...|.|+|||++.
T Consensus         7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~---~~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~   82 (136)
T d1wfja_           7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDV   82 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS---SCEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSS
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEe---eeeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecC
Confidence            6789999999999999999999999999999987   5678888875 689999999999999864 4479999999999


Q ss_pred             CCCCcceEEEEEEccccCC-CceeEEEEEccccccccCCCcceeEEEEEEEEEecCC
Q 008334          334 IQSSELIGCAQVRLCELEP-GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM  389 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~~-~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~  389 (569)
                      .++|++||++.++|.++.. +.....|+.+.+      .++..|+|++++.|.|.+.
T Consensus        83 ~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~------~~~~~G~i~l~l~~~p~~p  133 (136)
T d1wfja_          83 GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK------DEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE------TTEEEEEEEEEEEEEECCS
T ss_pred             CCCCCEEEEEEEEhHHhcccCCcCcEEEEecC------CCccCEEEEEEEEEEeCCC
Confidence            9999999999999998743 455678888743      4567899999999998543

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.2e-22  Score=167.95  Aligned_cols=122  Identities=29%  Similarity=0.548  Sum_probs=106.3

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI  334 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~  334 (569)
                      ++.|.|+|+|++|++|+.++..|.+||||+++++   +++++|++++++.||+|||+|.|.+.+. .+.|.|+|||++..
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~   78 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELG---NDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGD   78 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET---TEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETT
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcC---CeEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCC
Confidence            5789999999999999999999999999999997   6789999999999999999999999865 46899999999999


Q ss_pred             CCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334          335 QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC  385 (569)
Q Consensus       335 ~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~  385 (569)
                      ++|++||++.+++.++..+.  ..|+.|...   ...++.+|+|+++++|.
T Consensus        79 ~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~---~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          79 KPPDFLGKVAIPLLSIRDGQ--PNCYVLKNK---DLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             EEEEECCBCEEEGGGCCSSC--CEECCCBCS---CTTSCCSSEEEEEEEEE
T ss_pred             cCcceEEEEEEEHHHCCCCC--ceEEEcccc---CCCCceeEEEEEEEEEE
Confidence            88999999999999997765  467777432   22455679999999886

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.9e-21  Score=163.50  Aligned_cols=121  Identities=22%  Similarity=0.448  Sum_probs=107.9

Q ss_pred             ceEEEEEEEEeEcCCCC---CCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCC
Q 008334          443 RGVLSVTVILAENLPAS---DLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT  518 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~---~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~  518 (569)
                      ++.|+|+|++|+||+..   +..|.+||||++++++ ...+++|++++++.||.|||+|.|.+.+.....|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            47899999999999974   3467899999999974 3357899999999999999999999987777899999999998


Q ss_pred             CCCceeEEEEEecceeeecceEeEEEEcCCCCCeEEEEEEEEeec
Q 008334          519 FGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWMPQ  563 (569)
Q Consensus       519 ~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~p~  563 (569)
                      .++++||++.++|+++..+.....||+|++...|.|++++++.|.
T Consensus        82 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~~s  126 (126)
T d1rlwa_          82 VMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVASS  126 (126)
T ss_dssp             SCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCCC
T ss_pred             CCCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEEeC
Confidence            877899999999999988888899999999989999999998763

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-20  Score=161.20  Aligned_cols=121  Identities=26%  Similarity=0.518  Sum_probs=106.2

Q ss_pred             cEEEEEEEEEeeccccC---CCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCC
Q 008334          257 VGTLEVKLVQAKGLTNK---DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG  333 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~  333 (569)
                      .+.|+|+|++|+||+..   |..|.+||||++++++...++++|+++.++.||.|||+|.|.+.+.....|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            47899999999999864   446889999999998655678999999999999999999999987777789999999987


Q ss_pred             CCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334          334 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      . +|++||++.++|.++..+...+.|++|.        ....|.+++.+++.|
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~--------~~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN--------QVTEMVLEMSLEVAS  125 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEET--------TTEEEEEEEEEECCC
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEcc--------CCCeEEEEEEEEEEe
Confidence            5 5899999999999999998999999994        245799999998865

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.8e-20  Score=156.16  Aligned_cols=116  Identities=32%  Similarity=0.572  Sum_probs=101.1

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  521 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~  521 (569)
                      ..|.|+|+|++|++|+..+..|.+||||++++++  .+++|+++++|.||.|||.|+|.+.++ .+.|.|+|||++..++
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~--~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~~   80 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGN--DRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDKP   80 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT--EEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCC--eEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCCcC
Confidence            4599999999999999999999999999999975  678999999999999999999999865 5789999999988876


Q ss_pred             -ceeEEEEEecceeeecceEeEEEEcCC-----CCCeEEEEEEEEee
Q 008334          522 -DYMGRCILTLTRVILEGEYTDCFELDG-----TKSGKLKLHLKWMP  562 (569)
Q Consensus       522 -d~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~~~~~p  562 (569)
                       ++||++.|+|+++..+.  .+||.|..     ..+|+|++++++..
T Consensus        81 d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i~  125 (126)
T d2ep6a1          81 PDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY  125 (126)
T ss_dssp             EEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             cceEEEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEEEE
Confidence             69999999999986543  57888753     34799999998863

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=1.8e-19  Score=155.80  Aligned_cols=120  Identities=29%  Similarity=0.518  Sum_probs=102.5

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccC-CCCCCeeceEEEEEeccCCCCEEEEEEEECCCCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG  520 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~  520 (569)
                      ..|.|+|+|++|++|+..+..|.+||||++++++  ..++|++++ ++.||.|||+|+|.+.+. ...|+|+|||++..+
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~--~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~~   84 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--QDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVGT   84 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS--CEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSCT
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee--eeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecCCC
Confidence            4699999999999999999999999999999975  566777776 589999999999999864 456999999999887


Q ss_pred             C-ceeEEEEEecceeeecce-EeEEEEcC--CCCCeEEEEEEEEeecC
Q 008334          521 K-DYMGRCILTLTRVILEGE-YTDCFELD--GTKSGKLKLHLKWMPQP  564 (569)
Q Consensus       521 ~-d~lG~~~i~l~~l~~~~~-~~~w~~L~--~~~~G~i~l~~~~~p~~  564 (569)
                      + ++||++.|+|.++..... ...|+++.  +...|+|++++.|.|..
T Consensus        85 ~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~~  132 (136)
T d1wfja_          85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             CCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeCC
Confidence            6 699999999999876544 47899884  34579999999999853

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=3.3e-19  Score=153.17  Aligned_cols=109  Identities=35%  Similarity=0.568  Sum_probs=92.7

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccC-CCCEEEEEEEECCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT  518 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~~~~l~i~V~d~~~  518 (569)
                      .+.|.|+|++|+||+.++..|.+||||++++..   ...+++|+++++|.||.|||.|.|.+... ....|.|+|||++.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            378999999999999999999999999999842   23578999999999999999999998754 34579999999999


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEEcCCCCCe
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSG  552 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G  552 (569)
                      .++ ++||.+.|+|+++..+ ..++||+|.+.+.|
T Consensus        94 ~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g  127 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEG  127 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHH
T ss_pred             CCCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCC
Confidence            876 6999999999998544 46899999775444

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.78  E-value=1.1e-18  Score=150.43  Aligned_cols=116  Identities=20%  Similarity=0.337  Sum_probs=99.0

Q ss_pred             cEEEEEEEEEeeccccCC-----------CCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEE
Q 008334          257 VGTLEVKLVQAKGLTNKD-----------LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLV  325 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d-----------~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~  325 (569)
                      .|.|+|+|++|++|++.+           ..+.+||||+++++  +....+|++++++.||.|||+|.|.+.+  .+.|.
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~--~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~   80 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD--DSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIE   80 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeC--CCcCcEeeEEcCCCCccCccEEEEEEec--CCceE
Confidence            599999999999998753           34678999999997  2345689999999999999999999975  35899


Q ss_pred             EEEEECCCCCCCcceEEEEEEccccCCC--ceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334          326 VRIYDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       326 i~v~d~~~~~~d~~iG~~~i~l~~l~~~--~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      |+|||++.+++|++||.+.++|.++..+  ...+.|++|.          +.|++++.+.+.|
T Consensus        81 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------p~G~v~l~v~~~~  133 (136)
T d1gmia_          81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE----------PEGKVYVIIDLSG  133 (136)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB----------SSCEEEEEEEEEE
T ss_pred             EEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCC----------CCcEEEEEEEEEe
Confidence            9999999999999999999999999654  4567899983          3699999999876

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.7e-18  Score=150.81  Aligned_cols=107  Identities=30%  Similarity=0.477  Sum_probs=93.2

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  519 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~  519 (569)
                      .+.|.|+|++|+||+..+..|.+||||++++.. ...+++|++++++.||.|||+|.|.+...  ....|.|+|||++..
T Consensus        33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~  112 (143)
T d1rsya_          33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  112 (143)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCC
Confidence            478999999999999999899999999999853 33568999999999999999999988532  457899999999988


Q ss_pred             CC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334          520 GK-DYMGRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      ++ ++||++.|+|.++..+....+||+|+.+
T Consensus       113 ~~~~~iG~~~i~L~~~~~~~~~~~W~~L~sa  143 (143)
T d1rsya_         113 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  143 (143)
T ss_dssp             SCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             CCCcEEEEEEEEchhccCCCCCccEEeCCCC
Confidence            76 5999999999999877777999999753

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.78  E-value=1.5e-18  Score=149.59  Aligned_cols=118  Identities=19%  Similarity=0.405  Sum_probs=100.9

Q ss_pred             ccceEEEEEEEEeEcCCCCC-----------CCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEE
Q 008334          441 IIRGVLSVTVILAENLPASD-----------LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDML  509 (569)
Q Consensus       441 ~~~~~L~v~v~~a~~L~~~~-----------~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l  509 (569)
                      ..+|.|+|+|.+|++|++.+           ..+.+||||++++++ ....+|++++++.||.|||.|.|.+.+  ...|
T Consensus         3 ~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~-~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l   79 (136)
T d1gmia_           3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD-SRIGQTATKQKTNSPAWHDEFVTDVCN--GRKI   79 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT-EEEEECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred             cEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCC-CcCcEeeEEcCCCCccCccEEEEEEec--CCce
Confidence            35799999999999998753           456789999999975 355689999999999999999999975  4679


Q ss_pred             EEEEEECCCCCC-ceeEEEEEecceeeecc--eEeEEEEcCCCCCeEEEEEEEEeec
Q 008334          510 IAEVWDHDTFGK-DYMGRCILTLTRVILEG--EYTDCFELDGTKSGKLKLHLKWMPQ  563 (569)
Q Consensus       510 ~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~--~~~~w~~L~~~~~G~i~l~~~~~p~  563 (569)
                      .|+|||++..++ ++||.+.|+|+++..+.  ..+.|++|++  .|+|++.+++.|.
T Consensus        80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p--~G~v~l~v~~~~~  134 (136)
T d1gmia_          80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEEE
T ss_pred             EEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC--CcEEEEEEEEEeC
Confidence            999999998876 69999999999997664  4578999985  6999999998874

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=1e-18  Score=152.19  Aligned_cols=110  Identities=31%  Similarity=0.492  Sum_probs=99.1

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEEC
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  331 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~  331 (569)
                      ....+.|+|+|++|+||+.++..|.+||||++++.+.+.+.++|++++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus        30 ~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~  109 (143)
T d1rsya_          30 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDF  109 (143)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEEC
T ss_pred             eCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEc
Confidence            356789999999999999999889999999999987667889999999999999999999987533  456899999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      +..+++++||++.++|.++..+...+.|++|+
T Consensus       110 d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  141 (143)
T d1rsya_         110 DRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             CSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             CCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence            99989999999999999998888889999985

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.9e-18  Score=148.34  Aligned_cols=107  Identities=35%  Similarity=0.539  Sum_probs=93.8

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecC--CCCeEEeeecCCCCCCeeccEEEEEEecCC-CcEEEEEEEECCC
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDEG  333 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-~~~L~i~v~d~~~  333 (569)
                      .+.|.|+|++|+||+.+|..|.+||||++++.+.  +..+++|++++++.||+|||+|.|.+.... ...|.|+|||++.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            4789999999999999999999999999999643  345789999999999999999999987543 4579999999999


Q ss_pred             CCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          334 IQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       334 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      .++|++||++.+++.++..+. .+.|++|..
T Consensus        94 ~~~d~~iG~~~i~l~~l~~~~-~~~W~~L~~  123 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQKAG-VDGWFKLLS  123 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTTCC-EEEEEECBC
T ss_pred             CCCCcEeEEEEEeHHHcCCCC-CCeEEECCC
Confidence            999999999999999987654 578999964

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.1e-18  Score=146.87  Aligned_cols=122  Identities=25%  Similarity=0.355  Sum_probs=98.3

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCC
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS  336 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~  336 (569)
                      .+.|.|+|++|++++.++..+.+||||++.++   ++.++|++++++.||.|||.|.|.+.+  .+.|.|+|||++.+++
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~   79 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKS   79 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSC
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEEC---CeEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCC
Confidence            38899999999999998888899999999997   678999999999999999999999864  4689999999999999


Q ss_pred             CcceEEEEEEccccC---CCceeEEE--EEccccccccCCCcceeEEEEEEEEEe
Q 008334          337 SELIGCAQVRLCELE---PGKVKDVW--LKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       337 d~~iG~~~i~l~~l~---~~~~~~~~--~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      |++||++.++|.++.   .+.....|  +.+...   .......|+|.+.+.+..
T Consensus        80 d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~---~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          80 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD---KEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES---SCTTSEEEEEEEEEESEE
T ss_pred             CceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC---CCCceEEEEEEEEEeeEE
Confidence            999999999999873   23333334  443321   234567899999887653

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.6e-18  Score=146.96  Aligned_cols=107  Identities=30%  Similarity=0.439  Sum_probs=88.2

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF  519 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~  519 (569)
                      .+.|.|+|++|+||+..+..|.+||||++++.. ...+++|+++++|.||+|||+|.|.+...  ....|.|+|||++..
T Consensus        17 ~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~   96 (130)
T d1dqva1          17 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF   96 (130)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred             CCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCC
Confidence            478999999999999999899999999999853 23578999999999999999999998643  456799999999987


Q ss_pred             CC-ceeEEEEEecceeeec--ceEeEEEEcCCC
Q 008334          520 GK-DYMGRCILTLTRVILE--GEYTDCFELDGT  549 (569)
Q Consensus       520 ~~-d~lG~~~i~l~~l~~~--~~~~~w~~L~~~  549 (569)
                      ++ ++||++.|++......  .....||+|...
T Consensus        97 ~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~  129 (130)
T d1dqva1          97 SRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  129 (130)
T ss_dssp             SCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             CCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence            66 6999999986543332  234679999764

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1.9e-18  Score=150.38  Aligned_cols=106  Identities=28%  Similarity=0.500  Sum_probs=90.7

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC------------CeeEeecccCCCCCCeeceEEEEEec---cCCCCE
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKS------------ETRNKTRVVNDCLNPIWNQTFDFVVE---DGLHDM  508 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~------------~~~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~  508 (569)
                      |.|.|+|++|+||+..+..|.+||||++++...            ..+++|++++++.||.|||.|.|.+-   +.....
T Consensus        18 ~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~   97 (142)
T d1rh8a_          18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKT   97 (142)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCE
T ss_pred             CEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCE
Confidence            679999999999999999999999999998421            12468999999999999999999743   224668


Q ss_pred             EEEEEEECCCCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334          509 LIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT  549 (569)
Q Consensus       509 l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~  549 (569)
                      |.|+|||++..++ ++||++.|+|.++.......+||+|...
T Consensus        98 L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~  139 (142)
T d1rh8a_          98 LEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             EEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence            9999999998876 6999999999999887778899999875

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=2.7e-18  Score=146.83  Aligned_cols=110  Identities=30%  Similarity=0.459  Sum_probs=93.2

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEEC
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  331 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~  331 (569)
                      .+..+.|.|+|++|+||+.++..|.+||||++++.+.+.++++|++++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus        14 ~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~   93 (130)
T d1dqva1          14 LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDF   93 (130)
T ss_dssp             CSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEEC
T ss_pred             ECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEc
Confidence            356799999999999999999899999999999976667789999999999999999999998643  456799999999


Q ss_pred             CCCCCCcceEEEEEEccc-cCC-CceeEEEEEcc
Q 008334          332 EGIQSSELIGCAQVRLCE-LEP-GKVKDVWLKLV  363 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~-l~~-~~~~~~~~~L~  363 (569)
                      +.+++|++||++.+++.. +.. ......|++|.
T Consensus        94 ~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~  127 (130)
T d1dqva1          94 DRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL  127 (130)
T ss_dssp             CSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECB
T ss_pred             CCCCCCceEEEEEECchhhhhcCCCCCcEEEecc
Confidence            999999999999998643 322 23455799985

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=2.4e-17  Score=140.98  Aligned_cols=121  Identities=18%  Similarity=0.322  Sum_probs=92.7

Q ss_pred             EEEEEEEEEeecccc--CCCCCCCCcEEEEEEec--CCCCeEEeeecCC-CCCCeeccEEEEEEecCCCcEEEEEEEECC
Q 008334          258 GTLEVKLVQAKGLTN--KDLIGKSDPYAVLFVRP--LPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDE  332 (569)
Q Consensus       258 g~L~V~v~~a~~L~~--~d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~L~i~v~d~~  332 (569)
                      ..|+|+|++|++|+.  .+..+.+||||++++.+  .+.++++|+++++ +.||.|||+|.|.+.......|.|+|||++
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            479999999999975  45567899999999963  2346788888754 579999999999987777778999999999


Q ss_pred             CCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334          333 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY  384 (569)
Q Consensus       333 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~  384 (569)
                      ..++|++||++.++|..+.++   ..|++|....   ...-..++|.+.+.+
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~---g~~~~~~~L~v~i~~  129 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKN---GDQHPSATLFVKISI  129 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE---EEEEEEECTT---SCEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCC---CEEEECCCCC---cCCCCCCEEEEEEEE
Confidence            999999999999999999765   3588885321   122245677777765

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.5e-17  Score=138.84  Aligned_cols=104  Identities=27%  Similarity=0.535  Sum_probs=83.7

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEE-ecc--CCCCEEEEEEEEC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFV-VED--GLHDMLIAEVWDH  516 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~-v~~--~~~~~l~i~V~d~  516 (569)
                      .+.|.|+|++|+||+..+..+.+||||++++..   ...+++|++++++.||.|||+|.|. +..  .....|.|+|||+
T Consensus        13 ~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~   92 (125)
T d2bwqa1          13 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   92 (125)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEEC
Confidence            478999999999999988889999999999942   2356899999999999999999996 332  2345799999999


Q ss_pred             CCCC--C-ceeEEEEEecceeeecceEeEEEEcC
Q 008334          517 DTFG--K-DYMGRCILTLTRVILEGEYTDCFELD  547 (569)
Q Consensus       517 ~~~~--~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (569)
                      +..+  + ++||++.|+|+++..++. .+||+|+
T Consensus        93 ~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~  125 (125)
T d2bwqa1          93 ARVREEESEFLGEILIELETALLDDE-PHWYKLQ  125 (125)
T ss_dssp             -------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred             CCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence            8753  2 499999999999876554 6899985

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.7e-17  Score=138.79  Aligned_cols=117  Identities=25%  Similarity=0.376  Sum_probs=94.8

Q ss_pred             cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC
Q 008334          442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK  521 (569)
Q Consensus       442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~  521 (569)
                      ..+.|.|+|++|++++..+..+.+||||++.+++  ..++|+++++|.||.|||.|+|.+..  .+.|.|+|||++..++
T Consensus         4 ~~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~   79 (133)
T d2nq3a1           4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG--QSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKS   79 (133)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT--EEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSC
T ss_pred             cceEEEEEEEEeECCCcCCCCCCcCeEEEEEECC--eEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCC
Confidence            3488999999999999988888999999999976  67899999999999999999999974  5689999999999876


Q ss_pred             -ceeEEEEEecceeeec--c---eEeEEEEcCC-----CCCeEEEEEEEEee
Q 008334          522 -DYMGRCILTLTRVILE--G---EYTDCFELDG-----TKSGKLKLHLKWMP  562 (569)
Q Consensus       522 -d~lG~~~i~l~~l~~~--~---~~~~w~~L~~-----~~~G~i~l~~~~~p  562 (569)
                       ++||++.++|.++...  .   ....|+.+.+     ...|+|.+.+....
T Consensus        80 d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          80 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred             CceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEE
Confidence             6999999999998653  1   2234454432     23689998887654

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=3.7e-18  Score=148.59  Aligned_cols=109  Identities=23%  Similarity=0.452  Sum_probs=93.1

Q ss_pred             cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCC-----------eEEeeecCCCCCCeeccEEEEEEec---CCCc
Q 008334          257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK-----------TKKSKTINNDLNPIWNEHFEFIVED---ESTQ  322 (569)
Q Consensus       257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~-----------~~kT~~~~~t~nP~wne~f~f~v~~---~~~~  322 (569)
                      .|.|.|+|++|+||+.++..|.+||||++++.+....           +++|++++++.||.|||+|.|....   ....
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            5899999999999999999999999999999643322           3578888899999999999997432   2456


Q ss_pred             EEEEEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEcccc
Q 008334          323 HLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD  365 (569)
Q Consensus       323 ~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~  365 (569)
                      .|.|+|||++.+++|++||++.++|.++..+.....|++|.++
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~  139 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence            8999999999999999999999999999877778899999753

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=7.4e-17  Score=139.30  Aligned_cols=92  Identities=28%  Similarity=0.390  Sum_probs=73.0

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|+||+..+..+.+||||++++...   ..+++|++++++.||.|||+|.|.+...  ....|.|+|||++
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~   93 (138)
T d1w15a_          14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE   93 (138)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCC
Confidence            4789999999999999998899999999998422   2356899999999999999999998633  3457999999999


Q ss_pred             CCCC-ceeEEEEEeccee
Q 008334          518 TFGK-DYMGRCILTLTRV  534 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l  534 (569)
                      ..++ ++||++.|++.+.
T Consensus        94 ~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          94 RGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             TTSCCEEEEEEEESTTCC
T ss_pred             CCCCCCEEEEEEEcchhC
Confidence            8875 6999999999864

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=2e-16  Score=136.44  Aligned_cols=92  Identities=33%  Similarity=0.541  Sum_probs=79.4

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|+||+..+..+.+||||++++..   ...+++|++++++.||.|||.|.|.+...  ....|.|+|||++
T Consensus        14 ~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~   93 (137)
T d2cm5a1          14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD   93 (137)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCC
Confidence            478999999999999988889999999999843   23568999999999999999999998643  4568999999999


Q ss_pred             CCCC-ceeEEEEEeccee
Q 008334          518 TFGK-DYMGRCILTLTRV  534 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l  534 (569)
                      ..++ ++||++.+++.++
T Consensus        94 ~~~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          94 IGKSNDYIGGCQLGISAK  111 (137)
T ss_dssp             SSSCCEEEEEEEEETTCC
T ss_pred             CCCCCCEEEEEEeCcccc
Confidence            8766 6999999999864

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.5e-16  Score=134.30  Aligned_cols=118  Identities=18%  Similarity=0.280  Sum_probs=91.5

Q ss_pred             EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCC
Q 008334          258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  337 (569)
Q Consensus       258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d  337 (569)
                      +.|.|+|++|++|.+++   +.||||+++++   +++.+|++++ +.||+|||+|.|.+.++ .+.|.|+|||++.. .|
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~---~~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~d   72 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ---NVKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-WD   72 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEET---TEEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-CE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeC---CEEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCc-CC
Confidence            68999999999999865   67999999997   6778888776 55999999999999876 46899999999876 58


Q ss_pred             cceEEEEEEccccCCC--ceeEEEEEcccccccc------CCCcceeEEEEEEEE
Q 008334          338 ELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQ------RDTKYRGQVHLELLY  384 (569)
Q Consensus       338 ~~iG~~~i~l~~l~~~--~~~~~~~~L~~~~~~~------~~~~~~G~l~l~l~~  384 (569)
                      ++||++.|+|+++..+  ...+.|++|.......      ......+.|.++.+|
T Consensus        73 ~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~  127 (128)
T d2cjta1          73 TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  127 (128)
T ss_dssp             EEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             cceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence            9999999999998643  3456899996532111      112244567777665

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=2e-16  Score=133.58  Aligned_cols=110  Identities=23%  Similarity=0.334  Sum_probs=90.7

Q ss_pred             eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCce
Q 008334          444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY  523 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~  523 (569)
                      +.|.|+|.+|++|...+   ..||||++.+++  .+.+|.+++ +.||.|||.|.|.+.++ ...|.|+|||++..++++
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~--~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~~d~~   74 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN--VKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIWDTM   74 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETT--EEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSSCEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCC--EEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCcCCcc
Confidence            67999999999999865   679999999975  678888876 55999999999999876 567999999999877789


Q ss_pred             eEEEEEecceeeecc--eEeEEEEcCCC--------------CCeEEEEEEEE
Q 008334          524 MGRCILTLTRVILEG--EYTDCFELDGT--------------KSGKLKLHLKW  560 (569)
Q Consensus       524 lG~~~i~l~~l~~~~--~~~~w~~L~~~--------------~~G~i~l~~~~  560 (569)
                      ||++.|+|+++....  ...+||+|...              ...+|.+..+|
T Consensus        75 lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~  127 (128)
T d2cjta1          75 VGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  127 (128)
T ss_dssp             EEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             eEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence            999999999987543  34789999532              24567776665

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=2.6e-16  Score=138.88  Aligned_cols=107  Identities=27%  Similarity=0.466  Sum_probs=88.3

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|+||+..+..+.+||||++++....   ..++|++++++.||+|||+|.|.+...  ....|.|+|||++
T Consensus        24 ~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~  103 (157)
T d1uowa_          24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  103 (157)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccC
Confidence            47899999999999998888999999999985422   356899999999999999999998744  3458999999999


Q ss_pred             CCCC-ceeEEEEEeccee----------eec--ceEeEEEEcCCC
Q 008334          518 TFGK-DYMGRCILTLTRV----------ILE--GEYTDCFELDGT  549 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l----------~~~--~~~~~w~~L~~~  549 (569)
                      ..++ ++||++.|++...          ...  ....+||+|...
T Consensus       104 ~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~  148 (157)
T d1uowa_         104 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (157)
T ss_dssp             SSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             CCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence            9876 6999999999753          222  235799999753

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=3.9e-16  Score=133.33  Aligned_cols=115  Identities=22%  Similarity=0.326  Sum_probs=90.9

Q ss_pred             eEEEEEEEEeEcCCCC--CCCCCCCcEEEEEEeC---CCeeEeecccCC-CCCCeeceEEEEEeccCCCCEEEEEEEECC
Q 008334          444 GVLSVTVILAENLPAS--DLMGKADPYVVLTMKK---SETRNKTRVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHD  517 (569)
Q Consensus       444 ~~L~v~v~~a~~L~~~--~~~g~~dpyv~v~l~~---~~~~~~T~~~~~-t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~  517 (569)
                      ..|+|+|++|++|+..  +..+.+||||++++.+   ...+++|+++++ +.||.|||+|+|.+..+..+.|.|+|||++
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            5799999999999754  4567899999999954   346788988765 479999999999998777788999999999


Q ss_pred             CCCC-ceeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEEe
Q 008334          518 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKWM  561 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~  561 (569)
                      ..++ ++||++.|+|+++..+   .+|++|.+.     ..+.|.+++++.
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence            9876 6999999999998543   568888543     246777777764

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.1e-16  Score=135.21  Aligned_cols=105  Identities=18%  Similarity=0.182  Sum_probs=88.9

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC--CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS--ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDT  518 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~--~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~  518 (569)
                      .+.|.|+|++|++|+.   .|.+||||++++...  ...++|++++++.||.|||.|.|.+...  ....|.|+|||++.
T Consensus        25 ~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~  101 (138)
T d1wfma_          25 KAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             TTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc
Confidence            4789999999999964   467899999999642  2467899999999999999999998643  45689999999998


Q ss_pred             CCC-ceeEEEEEecceeeecceEeEEEEcCCCC
Q 008334          519 FGK-DYMGRCILTLTRVILEGEYTDCFELDGTK  550 (569)
Q Consensus       519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~  550 (569)
                      .++ ++||++.|+|.++......+.|+.|....
T Consensus       102 ~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~  134 (138)
T d1wfma_         102 FSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             SCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             cccceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence            876 69999999999987666779999998653

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.9e-16  Score=135.43  Aligned_cols=110  Identities=20%  Similarity=0.272  Sum_probs=90.4

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCC-CCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC---CCcEEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRI  328 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~-~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~v  328 (569)
                      +....+.|.|+|++|+||+.++..+. +||||++++.+.+.+.++|++++++.||.|||+|.|.....   ....|+|+|
T Consensus        17 Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V   96 (138)
T d1ugka_          17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI   96 (138)
T ss_dssp             EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred             EeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEE
Confidence            33567899999999999998876654 79999999987777889999999999999999999963222   345899999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCc-eeEEEEEc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGK-VKDVWLKL  362 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~-~~~~~~~L  362 (569)
                      ||++.+++|++||++.++|.++...+ ....|..+
T Consensus        97 ~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~  131 (138)
T d1ugka_          97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI  131 (138)
T ss_dssp             EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred             EECCCCCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence            99999999999999999999985433 34455554

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.9e-16  Score=136.59  Aligned_cols=107  Identities=16%  Similarity=0.147  Sum_probs=92.0

Q ss_pred             CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC-CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEEC
Q 008334          255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP-EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD  331 (569)
Q Consensus       255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~  331 (569)
                      ...+.|.|+|++|++|..   .|.+||||++++.+.. ...++|++++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus        23 ~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T d1wfma_          23 CQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeee
Confidence            566899999999999953   4778999999997542 2357899999999999999999998643  456899999999


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      +.++++++||++.|+|.++..+...+.|++|.+
T Consensus       100 ~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~  132 (138)
T d1wfma_         100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             cccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence            999999999999999999977777889999964

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.6e-16  Score=134.62  Aligned_cols=109  Identities=24%  Similarity=0.436  Sum_probs=86.7

Q ss_pred             cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEE-EecC--CCcEEEEEE
Q 008334          254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFI-VEDE--STQHLVVRI  328 (569)
Q Consensus       254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~-v~~~--~~~~L~i~v  328 (569)
                      .+..+.|.|+|++|+||+..+..+.+||||++++.+..  ..+++|++++++.||.|||+|.|. +...  ....|.|+|
T Consensus        10 ~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v   89 (125)
T d2bwqa1          10 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL   89 (125)
T ss_dssp             ETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEE
T ss_pred             ECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEE
Confidence            35668999999999999999888999999999996532  346899999999999999999996 3322  355899999


Q ss_pred             EECCCCC--CCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          329 YDDEGIQ--SSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       329 ~d~~~~~--~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      ||++..+  ++++||++.++|.++.... ...|++|+
T Consensus        90 ~d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L~  125 (125)
T d2bwqa1          90 WDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  125 (125)
T ss_dssp             EEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             EECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeCc
Confidence            9999753  4569999999999987554 35799983

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-15  Score=131.18  Aligned_cols=105  Identities=28%  Similarity=0.437  Sum_probs=84.0

Q ss_pred             ceEEEEEEEEeEcCCCCCCCC-CCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEe-ccC--CCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMG-KADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVV-EDG--LHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g-~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v-~~~--~~~~l~i~V~d~~  517 (569)
                      .+.|.|+|++|+||+..+..+ .+||||++++.. +..+++|++++++.||.|||+|.|.. ...  ....|.|+|||++
T Consensus        21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d  100 (138)
T d1ugka_          21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD  100 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECC
Confidence            478999999999999887655 479999999953 23578999999999999999999974 321  3457999999999


Q ss_pred             CCCC-ceeEEEEEecceeeec-ceEeEEEEcC
Q 008334          518 TFGK-DYMGRCILTLTRVILE-GEYTDCFELD  547 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~-~~~~~w~~L~  547 (569)
                      .+++ ++||++.|+|+++... +....|..+.
T Consensus       101 ~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~  132 (138)
T d1ugka_         101 RFSRDDIIGEVLIPLSGIELSEGKMLMNREII  132 (138)
T ss_dssp             SSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred             CCCCCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence            8875 6999999999998543 3455666653

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=5.6e-16  Score=136.73  Aligned_cols=112  Identities=30%  Similarity=0.443  Sum_probs=93.0

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCC--eEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  328 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v  328 (569)
                      +.+..|.|.|+|++|+||+..+..+.+||||++++.+.+.+  .++|++++++.||+|||+|.|.+...  ....|.|+|
T Consensus        20 Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v   99 (157)
T d1uowa_          20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV   99 (157)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEE
Confidence            34567999999999999999998899999999999754433  45799999999999999999998654  355899999


Q ss_pred             EECCCCCCCcceEEEEEEcccc------------CCCceeEEEEEccc
Q 008334          329 YDDEGIQSSELIGCAQVRLCEL------------EPGKVKDVWLKLVK  364 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l------------~~~~~~~~~~~L~~  364 (569)
                      ||++.++++++||++.+++...            .+......|++|..
T Consensus       100 ~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_         100 LDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             EECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             cccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            9999999999999999999653            23445568888853

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=4.9e-16  Score=134.04  Aligned_cols=98  Identities=24%  Similarity=0.296  Sum_probs=78.2

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  328 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v  328 (569)
                      +.+..|.|.|+|++|+||+.++..+.+||||++++.+.+.  .+++|++++++.||.|||+|.|.+...  ....|.|+|
T Consensus        10 Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v   89 (138)
T d1w15a_          10 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV   89 (138)
T ss_dssp             EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred             EcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEE
Confidence            3456789999999999999999889999999999965433  346789999999999999999998543  345799999


Q ss_pred             EECCCCCCCcceEEEEEEcccc
Q 008334          329 YDDEGIQSSELIGCAQVRLCEL  350 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l  350 (569)
                      ||++.++++++||++.+++...
T Consensus        90 ~d~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          90 LDSERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             EECCTTSCCEEEEEEEESTTCC
T ss_pred             EeCCCCCCCCEEEEEEEcchhC
Confidence            9999999999999999998753

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=1.3e-15  Score=131.36  Aligned_cols=98  Identities=24%  Similarity=0.405  Sum_probs=84.8

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecC--CCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  328 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v  328 (569)
                      +.+..|.|.|+|++|+||+..+..+.+||||++++.+.  ...+++|++++++.||+|||+|.|.+...  ....|.|.|
T Consensus        10 Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v   89 (137)
T d2cm5a1          10 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV   89 (137)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEe
Confidence            34567999999999999999888899999999999643  24568899999999999999999998643  356899999


Q ss_pred             EECCCCCCCcceEEEEEEcccc
Q 008334          329 YDDEGIQSSELIGCAQVRLCEL  350 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l  350 (569)
                      ||++..+++++||++.+++..+
T Consensus        90 ~~~~~~~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          90 WDYDIGKSNDYIGGCQLGISAK  111 (137)
T ss_dssp             EECCSSSCCEEEEEEEEETTCC
T ss_pred             eeCCCCCCCCEEEEEEeCcccc
Confidence            9999999999999999999764

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=5.1e-15  Score=124.25  Aligned_cols=110  Identities=14%  Similarity=0.225  Sum_probs=85.3

Q ss_pred             EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCc
Q 008334          446 LSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD  522 (569)
Q Consensus       446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d  522 (569)
                      +++.+....--+.....+.+||||++++++.   ...++|+++++|+||+|||+|+|.+.+  ...|.|.|||++   ++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---d~   79 (123)
T d1bdya_           5 LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---ED   79 (123)
T ss_dssp             EEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET---TE
T ss_pred             EEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc---cc
Confidence            4444433322233445788999999999642   234678888999999999999999985  467999999986   57


Q ss_pred             eeEEEEEecceeee-----cceEeEEEEcCCCCCeEEEEEEEEee
Q 008334          523 YMGRCILTLTRVIL-----EGEYTDCFELDGTKSGKLKLHLKWMP  562 (569)
Q Consensus       523 ~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~i~l~~~~~p  562 (569)
                      ++|.+.+++.++..     +...+.|++|+  +.|+|+++++|.+
T Consensus        80 ~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl~l~v~~f~  122 (123)
T d1bdya_          80 PMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEEE
T ss_pred             ccCccEEehhheeeccccCCCcccEEEeCC--CCEEEEEEEEEec
Confidence            99999999998864     34568999997  5799999999975

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=2.3e-16  Score=137.38  Aligned_cols=104  Identities=31%  Similarity=0.398  Sum_probs=84.4

Q ss_pred             ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEECC
Q 008334          443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD  517 (569)
Q Consensus       443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~~  517 (569)
                      .|.|.|+|++|+||+..+..+.+||||++++...   ..+++|+++++|.||.|||.|.|.+..  .....|.|+|||++
T Consensus        19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~   98 (145)
T d1dqva2          19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD   98 (145)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred             CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecC
Confidence            4889999999999999888899999999998642   235789999999999999999998763  24567999999999


Q ss_pred             CCCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334          518 TFGK-DYMGRCILTLTRVILEGEYTDCFELD  547 (569)
Q Consensus       518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~  547 (569)
                      ..++ ++||++.|++..+... +..+|+.|.
T Consensus        99 ~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~  128 (145)
T d1dqva2          99 CIGHNEVIGVCRVGPEAADPH-GREHWAEML  128 (145)
T ss_dssp             SSSCCEEEEECCCSSCTTCHH-HHHHHHTSS
T ss_pred             CCCCCcEEEEEEECchHcCch-hhHHHHHHH
Confidence            8876 5999999999875322 224566554

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=6.7e-15  Score=123.53  Aligned_cols=109  Identities=13%  Similarity=0.251  Sum_probs=85.5

Q ss_pred             EEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCC
Q 008334          260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS  337 (569)
Q Consensus       260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d  337 (569)
                      +.|.++.+..++  ...+.+||||++++.+..  .+.++|+++++|+||+|||+|.|.+.+  .+.|.|.|||+|    |
T Consensus         7 ~~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d----d   78 (123)
T d1bdya_           7 ISFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA----E   78 (123)
T ss_dssp             EEEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET----T
T ss_pred             EEEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc----c
Confidence            344445444443  446889999999996421  234678889999999999999999875  458999999975    6


Q ss_pred             cceEEEEEEcccc-----CCCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334          338 ELIGCAQVRLCEL-----EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP  386 (569)
Q Consensus       338 ~~iG~~~i~l~~l-----~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p  386 (569)
                      +++|.+.+++.++     ..+...+.|++|.          +.|+|+++++|++
T Consensus        79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~----------~~Gkl~l~v~~f~  122 (123)
T d1bdya_          79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ----------PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB----------SSCEEEEEEEEEE
T ss_pred             cccCccEEehhheeeccccCCCcccEEEeCC----------CCEEEEEEEEEec
Confidence            8999999999987     3467889999983          4799999999974

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=4e-16  Score=135.84  Aligned_cols=110  Identities=30%  Similarity=0.459  Sum_probs=89.8

Q ss_pred             ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334          253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI  328 (569)
Q Consensus       253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v  328 (569)
                      +.+..|.|.|+|++|+||+..+..+.+||||++++.+.+.  .+++|++++++.||+|||+|.|.+...  ....|.|.|
T Consensus        15 Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v   94 (145)
T d1dqva2          15 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAV   94 (145)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEE
T ss_pred             EcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEE
Confidence            4467799999999999999988889999999999975433  357899999999999999999987532  455799999


Q ss_pred             EECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334          329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV  363 (569)
Q Consensus       329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  363 (569)
                      ||++..+++++||++.+++..+... ....|+.+.
T Consensus        95 ~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~  128 (145)
T d1dqva2          95 VDYDCIGHNEVIGVCRVGPEAADPH-GREHWAEML  128 (145)
T ss_dssp             EECCSSSCCEEEEECCCSSCTTCHH-HHHHHHTSS
T ss_pred             EecCCCCCCcEEEEEEECchHcCch-hhHHHHHHH
Confidence            9999999999999999999765322 234566554

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.5e-12  Score=104.69  Aligned_cols=95  Identities=21%  Similarity=0.395  Sum_probs=71.9

Q ss_pred             EEEEEEEEeeccccCCCCCCCCcEEEEEEec---CCCCeEEeee--cCCCCCCeeccE-EEE-EEecCCCcEEEEEEEEC
Q 008334          259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP---LPEKTKKSKT--INNDLNPIWNEH-FEF-IVEDESTQHLVVRIYDD  331 (569)
Q Consensus       259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~kT~~--~~~t~nP~wne~-f~f-~v~~~~~~~L~i~v~d~  331 (569)
                      +|.|+|++|++|+.+    +.||||++++-.   +..++++|++  .+++.||+|||+ |.| .+..+....|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999854    479999999952   1234455554  377899999976 444 34444555899999997


Q ss_pred             CCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334          332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK  364 (569)
Q Consensus       332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  364 (569)
                      +    |++||++.+|++.+..|.   .+++|..
T Consensus        78 d----~~~lG~~~ipl~~l~~Gy---R~vpL~~  103 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSGY---HHLCLHS  103 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCEE---EEEEEEC
T ss_pred             C----CCEEEEEEEEcccCcCCc---eEEEccC
Confidence            5    789999999999998764   5677753

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.4e-12  Score=103.99  Aligned_cols=98  Identities=20%  Similarity=0.356  Sum_probs=72.8

Q ss_pred             EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC----CCeeEeecc--cCCCCCCeeceE-EEE-EeccCCCCEEEEEEEEC
Q 008334          445 VLSVTVILAENLPASDLMGKADPYVVLTMKK----SETRNKTRV--VNDCLNPIWNQT-FDF-VVEDGLHDMLIAEVWDH  516 (569)
Q Consensus       445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~----~~~~~~T~~--~~~t~nP~w~e~-f~f-~v~~~~~~~l~i~V~d~  516 (569)
                      .|.|+|++|++|+..    ..||||++++.+    ...+.+|++  ..++.||.|||. |.| .+..+....|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            589999999999865    479999999953    123344443  467899999976 444 35555567899999998


Q ss_pred             CCCCCceeEEEEEecceeeecceEeEEEEcCCCCCe
Q 008334          517 DTFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSG  552 (569)
Q Consensus       517 ~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G  552 (569)
                      +   +++||++.+|++.+..+   .++.+|.+....
T Consensus        78 d---~~~lG~~~ipl~~l~~G---yR~vpL~~~~g~  107 (122)
T d2zkmx2          78 G---NKFLGHRIIPINALNSG---YHHLCLHSESNM  107 (122)
T ss_dssp             T---TEEEEEEEEEGGGBCCE---EEEEEEECTTCC
T ss_pred             C---CCEEEEEEEEcccCcCC---ceEEEccCCCcC
Confidence            6   58999999999998544   567788765433