Citrus Sinensis ID: 008336
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 569 | 2.2.26 [Sep-21-2011] | |||||||
| O80763 | 578 | Probable nucleoredoxin 1 | yes | no | 0.998 | 0.982 | 0.660 | 0.0 | |
| Q7Y0E8 | 569 | Probable nucleoredoxin 1- | yes | no | 0.982 | 0.982 | 0.582 | 0.0 | |
| Q7Y0F2 | 581 | Probable nucleoredoxin 1- | no | no | 0.973 | 0.953 | 0.587 | 0.0 | |
| Q8VZQ0 | 392 | Probable nucleoredoxin 3 | no | no | 0.644 | 0.936 | 0.409 | 1e-81 | |
| Q0JIL1 | 394 | Probable nucleoredoxin 2 | no | no | 0.623 | 0.901 | 0.389 | 3e-74 | |
| Q7XPE8 | 471 | Probable nucleoredoxin 3 | no | no | 0.576 | 0.696 | 0.385 | 7e-67 | |
| Q503L9 | 418 | Nucleoredoxin OS=Danio re | yes | no | 0.411 | 0.559 | 0.344 | 5e-38 | |
| P97346 | 435 | Nucleoredoxin OS=Mus musc | yes | no | 0.451 | 0.590 | 0.320 | 1e-37 | |
| A6QLU8 | 435 | Nucleoredoxin OS=Bos taur | yes | no | 0.448 | 0.586 | 0.318 | 1e-37 | |
| Q6DKJ4 | 435 | Nucleoredoxin OS=Homo sap | yes | no | 0.448 | 0.586 | 0.318 | 1e-37 |
| >sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/572 (66%), Positives = 474/572 (82%), Gaps = 4/572 (0%)
Query: 2 NMNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILA 60
+NG ++ D+ SLLSS ARDFL+R++G+QVK+DSL GK IGLYFSA+WCGPCQRFTP L
Sbjct: 7 QVNGDDAQDLHSLLSSPARDFLVRNDGEQVKVDSLLGKKIGLYFSAAWCGPCQRFTPQLV 66
Query: 61 EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120
EVYNELS + FE++FVSGDED+E+F YF KMPWLAVPF+DSETRD+LDELFKV GIP+
Sbjct: 67 EVYNELSSKVGFEIVFVSGDEDEESFGDYFRKMPWLAVPFTDSETRDRLDELFKVRGIPN 126
Query: 121 LVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD 180
LV++D++GK++++ GV +IR YG + YPFT E++KE+KE E+RA+R Q+LRSVL + SRD
Sbjct: 127 LVMVDDHGKLVNENGVGVIRSYGADAYPFTPEKMKEIKEDEDRARRGQTLRSVLVTPSRD 186
Query: 181 FVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240
FVIS DG K+ VS+LEGKTIGL FS++SY+ E TP+LVE Y KLK E FEIVLISL
Sbjct: 187 FVISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKEDFEIVLISL 246
Query: 241 DDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE 300
+D+EESF +D + PWLALPF DKS KLAR+F LSTLPTLVI+GPDGKT HSNVAEAI+
Sbjct: 247 EDDEESFNQDFKTKPWLALPFNDKSGSKLARHFMLSTLPTLVILGPDGKTRHSNVAEAID 306
Query: 301 EHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTI 360
++GV A+PFTPEKF EL E+++AK E+QTLES+LVSGDL++V+GK+G KV VSDL GKTI
Sbjct: 307 DYGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKDGAKVLVSDLVGKTI 366
Query: 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALP 420
L+YFSAHWCPPCRAF PKL++ YK+IKERNE+ E++FISSDRDQ SFDE++ MPWLALP
Sbjct: 367 LMYFSAHWCPPCRAFTPKLVEVYKQIKERNEAFELIFISSDRDQESFDEYYSQMPWLALP 426
Query: 421 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 480
FGD RKASL++ FKV GIPML A+GP+G+T+TKEARD++ HGA+AYPFTEER+KEI+ +
Sbjct: 427 FGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFTEERLKEIEAK 486
Query: 481 YNEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALG 539
Y+E+AK WP+ VKH LH EHEL L R VY+CD C+EEG +W++ CDECDF LH CAL
Sbjct: 487 YDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALN 546
Query: 540 EDKGTKDDKSEEQ--NPSKEGWRCDGGLCYKG 569
ED D++ + + SK+GW C+G +C K
Sbjct: 547 EDTKENGDEAVKVGGDESKDGWVCEGNVCTKA 578
|
Probable thiol-disulfide oxidoreductase required for pollen tube growth and pollen function in the pistil. Seems not to be required for in vitro pollen tube growth. May be involved in the generation of lipid signaling molecules in pistil. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 8 |
| >sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica GN=Os03g0405500 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/573 (58%), Positives = 427/573 (74%), Gaps = 14/573 (2%)
Query: 6 ANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYN 64
A++ I ++L++ RDFL+R++ DQVK+ S++ + LYFSASWC PC+RFTP L E YN
Sbjct: 2 ADAAGIATVLAADGRDFLLRNSADQVKISSIEASTVALYFSASWCPPCRRFTPKLIEAYN 61
Query: 65 ELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVI 123
EL QG +FEV+FVSGD+D EAF YF+KMPWLAVPFSDSE R KL++ FKV GIPHLVI
Sbjct: 62 ELVSQGKNFEVVFVSGDKDQEAFDAYFAKMPWLAVPFSDSECRAKLNKRFKVRGIPHLVI 121
Query: 124 LD-ENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFV 182
L+ +G+V ++ GVE++ +G E YPFT ERI E+KEQE+ AK Q+++SVL + +RD++
Sbjct: 122 LNATSGEVYTEDGVELVTVHGTEAYPFTTERINELKEQEKAAKDNQTVQSVLGTPTRDYL 181
Query: 183 ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD 242
+S+ G ++ +SDLEGK +GL F ++ Y +FT L + YEKLK GE FE+V +SLD
Sbjct: 182 LSNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGEKFEVVAVSLDS 241
Query: 243 EEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEH 302
+EE MPWLA+P +DK EKLARYFEL LPTLV+IGPDGKTL++NVA+ I+EH
Sbjct: 242 DEELSNESFAGMPWLAIPQEDKMGEKLARYFELRGLPTLVLIGPDGKTLNNNVADIIDEH 301
Query: 303 GVGA---FPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKT 359
G A FPFT EK LAE +AK E QTLES+LV GDLDFV+GK+G KVPVS+L GKT
Sbjct: 302 GQDAWEGFPFTAEKMEILAEKAKAKAELQTLESLLVIGDLDFVLGKDGAKVPVSELVGKT 361
Query: 360 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLAL 419
+LLYFSA WC PCRAFLPKL+D Y KIKE++ E++FISSDRDQ+S+DEFF GMPWLAL
Sbjct: 362 VLLYFSAKWCGPCRAFLPKLVDEYNKIKEKHNDFEIIFISSDRDQSSYDEFFSGMPWLAL 421
Query: 420 PFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 479
P GD RK LS+ F+V GIP LVAIG GRT+ ++A+ + HGA+A+PFTEER+ E++
Sbjct: 422 PLGDERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTAHGADAFPFTEERLLEMER 481
Query: 480 QYNEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCAL 538
+ +EMAKGWP +KH LH EHELVL RC Y CDGCDE G W++ C ECDF LHP CAL
Sbjct: 482 KIDEMAKGWPGKLKHELHDEHELVLTRCTTYGCDGCDEMGSSWSYRCRECDFDLHPKCAL 541
Query: 539 G--EDKGTKDDKSEEQNPSKEGWRCDGGLCYKG 569
G E+K D+ E +P+ C+GG+C K
Sbjct: 542 GKEEEKKGDDEAEAEADPA-----CEGGVCRKA 569
|
Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica GN=Os03g0405900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/565 (58%), Positives = 424/565 (75%), Gaps = 11/565 (1%)
Query: 14 LLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-D 71
L S+ RDFL+R++ D+VK+ S+K + LYFSASWC PC+RFTP L E YNEL QG
Sbjct: 17 LASADGRDFLLRNSADKVKISSIKASTVALYFSASWCPPCRRFTPKLIEAYNELVSQGKS 76
Query: 72 FEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKV 130
FEV+FVSGD D +AF YF+KMPWLAVPFSDSE KL+E +KVMGIPHLVILD ++G++
Sbjct: 77 FEVVFVSGDSDQDAFNAYFAKMPWLAVPFSDSEALAKLNERYKVMGIPHLVILDAKSGEI 136
Query: 131 LSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKI 190
++ GVE++ EYG E YPFT ERI E+KEQE+ AK Q++ S+ + +RD++I++ G K+
Sbjct: 137 YTEDGVELVHEYGTEAYPFTTERINELKEQEKAAKDNQTIHSLFGTPTRDYLITNKGDKV 196
Query: 191 SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250
+SDLEGK +GL F ++ Y +FT L ++YEKLK GE FE+V++SLD +EESF
Sbjct: 197 PISDLEGKYVGLCFVVNGYGPVVQFTSVLAKIYEKLKAVGEKFEVVMVSLDGDEESFNES 256
Query: 251 LGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGA---F 307
MPWLA+P DK EKLARYFELS LP LV+IGPDGKTL+ ++A+ I+EHG A F
Sbjct: 257 FADMPWLAIPQGDKMCEKLARYFELSGLPMLVLIGPDGKTLNDDIADIIDEHGPDAWEGF 316
Query: 308 PFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAH 367
PF+ EK LAE +AK ESQTLES+LV+GDLDFV+GK+G KVPVS+L GKT+LLYFSA
Sbjct: 317 PFSAEKLEILAEKAKAKAESQTLESLLVTGDLDFVLGKDGAKVPVSELVGKTVLLYFSAK 376
Query: 368 WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKA 427
WCPPCRAFLPKL++ Y KIKE++ E+VFISSDR+Q+S+DEFF GMPWLALP GD RK
Sbjct: 377 WCPPCRAFLPKLVNEYNKIKEKHNDFEIVFISSDREQSSYDEFFSGMPWLALPLGDERKQ 436
Query: 428 SLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFT----EERMKEIDGQYNE 483
LS+ FK++GIP LVAIGP G+T+TK+A+ + HGA+A+PFT +E KE + + N+
Sbjct: 437 QLSKIFKITGIPSLVAIGPDGKTVTKDAKTPLVAHGADAFPFTEEKLQELEKEKEKKIND 496
Query: 484 MAKGWPENVKHALHEHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGEDKG 543
MAKGWPE +KH LH+HELVL RC Y CDGCDE G W++ C ECDF LHP CAL E+KG
Sbjct: 497 MAKGWPEKLKHDLHDHELVLTRCTTYGCDGCDEMGDSWSYRCKECDFDLHPKCAL-EEKG 555
Query: 544 TKDDKSEEQNPSKEGWRCDGGLCYK 568
+ E + G+ C+G +C K
Sbjct: 556 DVEMGEENAEAAPAGYVCEGDVCRK 580
|
Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (778), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 219/369 (59%), Gaps = 2/369 (0%)
Query: 170 LRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGK 229
L S+L + +F++S G ++ + + GKTI L+FS + +FTP L+++YE L+ +
Sbjct: 17 LYSILAAEGIEFLLSHSG-EVPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYENLQNR 75
Query: 230 GESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
GE EI+ +S D + SF MPWLA+PF KL + +S +P+LV + D
Sbjct: 76 GEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLSLLNKLRDKYGISRIPSLVPLYSDEI 135
Query: 290 TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGK 349
++ +V IE++G AFPFT ++ EL I +K LE +L ++VV +NG K
Sbjct: 136 SVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVVARNGSK 195
Query: 350 VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNE-SLEVVFISSDRDQTSFD 408
V VS L GKTI LYF AHWCPP R+F +L+D Y ++ ++ S EV+ IS+DRD F+
Sbjct: 196 VLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSFEVILISTDRDSREFN 255
Query: 409 EFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYP 468
MPWLA+P+ D + L R F V IP LV IGP +T+T AR+M++++G+ ++P
Sbjct: 256 INMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTTNAREMVSLYGSRSFP 315
Query: 469 FTEERMKEIDGQYNEMAKGWPENVKHALHEHELVLDRCGVYSCDGCDEEGRVWAFSCDEC 528
FTE R+ E+ + P VK HEHEL LD Y CD C ++GR WAFSC+ C
Sbjct: 316 FTESRIVELKACLKKEGDSLPRKVKDNKHEHELKLDMAKAYVCDFCKKQGRFWAFSCNAC 375
Query: 529 DFCLHPNCA 537
D+ LHP C
Sbjct: 376 DYDLHPTCV 384
|
Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (715), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 216/362 (59%), Gaps = 7/362 (1%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
+IS G ++ +S+LEGK IGLYF+ + Y FTP L Y +LK G FE++ +S D
Sbjct: 26 LISPTGNEVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEHGAGFEVIFVSCD 85
Query: 242 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE 300
+ SF+R +MPW A+PF D +++L+ F++ +P LV++ P+G+ + + E +
Sbjct: 86 ENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQVEGIPRLVVLAPNGEVVQPDAVELVH 145
Query: 301 EHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTI 360
+G AFPFT + AEL ++ K SQTLE + D+V G +VP+S L GKT+
Sbjct: 146 RYGDRAFPFTSARVAELEADEQRKFASQTLEKIFSVSGKDYVNGSQE-QVPISSLVGKTV 204
Query: 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALP 420
LYFSAH C PC F KL Y +K + E E+++I D+++ + MPWLALP
Sbjct: 205 GLYFSAHRCAPCIKFTAKLAAIYSNLKGKAEDFEIIYIPMDKEEDGYLRSCSDMPWLALP 264
Query: 421 FGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 479
+ D A +L+R F V IP LV +GP G+T+T+E R+++ ++ A+PFT+E+++ +
Sbjct: 265 YDDGASSGALARYFDVREIPTLVVVGPDGKTVTREGRNLVNLYFDMAFPFTDEQIRLLQE 324
Query: 480 QYNEMAKGWPENVKHALHEHEL--VLDRC--GVYSCDGCDEEGRVWAFSCDECDFCLHPN 535
+E AKG+P +++H H HEL V D+ G Y C CDE+G WA+ C C + +H
Sbjct: 325 MEDEDAKGYPPSLRHTGHRHELSIVSDKSGGGPYICCECDEQGLGWAYQCIACGYEIHLR 384
Query: 536 CA 537
C
Sbjct: 385 CG 386
|
Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 3 OS=Oryza sativa subsp. japonica GN=Os04g0608600 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 255 bits (651), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 195/332 (58%), Gaps = 4/332 (1%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
++S+ G++I +S +EGK I L+FS + FTP+L+++Y KL+ ++ EI+ ISLD
Sbjct: 26 LLSNGGKEIPLSSIEGKRICLFFSAHWCRPCRNFTPKLLQIYRKLRNTCKNMEIIFISLD 85
Query: 242 DEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGP---DGKTLHSNVAEA 298
+E SF MPWLALPF R+KL F++ +P L+ + G + + +
Sbjct: 86 RDEISFLDYFKGMPWLALPFDTGLRQKLCVQFDIEHIPALIPLSTTLSHGFRVEEDAVKL 145
Query: 299 IEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGK 358
+EE+GV A+PF ++ +EL + A+ + L +L + ++V+ +G K P+SDL GK
Sbjct: 146 VEEYGVDAYPFGAKRRSELEGMDDARRQGGNLLQLLGCKEREYVISADGIKTPISDLNGK 205
Query: 359 TILLYFSAHWCPPCRAFLPKLIDAYKKIKE-RNESLEVVFISSDRDQTSFDEFFKGMPWL 417
TI LYF AHWCPPCRAF +L +AY ++K R + +V+FIS DR++ F MPW
Sbjct: 206 TIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEFQASLSAMPWF 265
Query: 418 ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 477
A+P+ D LSR F + GIP L+ +GP G+ + R +I+ +GA A+PFTE R E+
Sbjct: 266 AIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMAFPFTESRAYEL 325
Query: 478 DGQYNEMAKGWPENVKHALHEHELVLDRCGVY 509
+ + P V+ HEHEL LD Y
Sbjct: 326 EEVLKKERDSLPHRVRDHRHEHELELDMAKAY 357
|
Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q503L9|NXN_DANRE Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 141/261 (54%), Gaps = 27/261 (10%)
Query: 203 YFSMSSYKASAEFTPRLVEVYEKLKGKGE---SFEIVLISLDDEEESFKRDLGSMPWLAL 259
YF S +F L E Y K K E EIV IS D +++ ++ L M W AL
Sbjct: 36 YFGCSLNGPCKQFNASLTEFYSKFKKSSEHKDKLEIVFISSDQDQKQWQDFLQEMQWPAL 95
Query: 260 PFKDKSRE-KLARYFELSTLPTLVII-GPDGKTLHSNVAEAIEEHGVGA-FPFTPEKFAE 316
PFKD+ ++ KL ++++++P+LV I GK + N + + G FP+ P+ FAE
Sbjct: 96 PFKDRHKKMKLWNKYKVTSIPSLVFIDAATGKVVCRNGLLVVRDDPKGLEFPWGPKPFAE 155
Query: 317 LAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFL 376
+ + QT +S + L G + +YFSAHWCPPCR+
Sbjct: 156 VVSGPLLRNNRQTTDS--------------------TALEGSYVGVYFSAHWCPPCRSLT 195
Query: 377 PKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD-ARKASLSRKFKV 435
L+++Y+K+KE + E+VF+S+DR + SF ++F MPWLA+P+ D AR++ L+R + +
Sbjct: 196 RVLVESYRKVKETGQKFEIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGI 255
Query: 436 SGIPMLVAIGPSGRTITKEAR 456
GIP L+ + G IT++ R
Sbjct: 256 QGIPTLILLDTEGHMITRQGR 276
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway. Danio rerio (taxid: 7955) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|P97346|NXN_MOUSE Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 157/303 (51%), Gaps = 46/303 (15%)
Query: 180 DFVISSDGRKISVSDLEGKTI---GLYFSMSSYKASAEFTPRLVEVYEKLKGKG------ 230
D +++ G ++ V L + I GLYF S A+ + L Y +L+G
Sbjct: 11 DKLVTGGGEEVDVHSLGARGIALLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGA 70
Query: 231 -------------ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELS 276
EIV +S D ++ ++ + MPWLALP+K+K R+ KL + +S
Sbjct: 71 GAGAGAAAEPEPRHRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRVS 130
Query: 277 TLPTLVII-GPDGKTLHSNVAEAIEEHGVGA-FPFTPEKFAELAEIQRAKEESQTLESVL 334
+P+L+ + GK + N I + G FP+ P+ F E+
Sbjct: 131 NIPSLIFLDATTGKVVCRNGLLVIRDDPEGLEFPWGPKPFREV----------------- 173
Query: 335 VSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLE 394
++G L + NG + S L G + +YFSAHWCPPCR+ L+++Y+KIKE + E
Sbjct: 174 IAGPL---LRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFE 230
Query: 395 VVFISSDRDQTSFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITK 453
++F+S+DR + SF ++F MPWLA+P+ D AR++ L+R + + GIP L+ + P G IT+
Sbjct: 231 IIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITR 290
Query: 454 EAR 456
+ R
Sbjct: 291 QGR 293
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Mus musculus (taxid: 10090) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|A6QLU8|NXN_BOVIN Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 156/301 (51%), Gaps = 46/301 (15%)
Query: 182 VISSDGRKISVSDLEGKTI---GLYFSMSSYKASAEFTPRLVEVYEKLKGKG-------- 230
+++ G ++ V L + I GLYF S A+ + L Y +L+G
Sbjct: 13 LVTGGGEEVDVHSLAARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGP 72
Query: 231 -----------ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTL 278
EIV +S D ++ ++ + MPWLALP+K+K R+ KL + +S +
Sbjct: 73 GAGASAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRISNI 132
Query: 279 PTLVII-GPDGKTLHSNVAEAIEEHGVGA-FPFTPEKFAELAEIQRAKEESQTLESVLVS 336
P+L+ + GK + N I + G FP+ P+ F E+ ++
Sbjct: 133 PSLIFLDATSGKVVCRNGLLVIRDDPEGLEFPWGPKPFREV-----------------IA 175
Query: 337 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV 396
G L + NG + S L G + +YFSAHWCPPCR+ L+++Y+KIKE + E++
Sbjct: 176 GPL---LRSNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEII 232
Query: 397 FISSDRDQTSFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 455
F+S+DR + SF ++F MPWLA+P+ D AR++ L+R + + GIP L+ + P G IT++
Sbjct: 233 FVSADRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQG 292
Query: 456 R 456
R
Sbjct: 293 R 293
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Bos taurus (taxid: 9913) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q6DKJ4|NXN_HUMAN Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 157/301 (52%), Gaps = 46/301 (15%)
Query: 182 VISSDGRKISVSDLEGKTI---GLYFSMSSYKASAEFTPRLVEVYEKLKGKG-------- 230
+++ G ++ V L + I GLYF S A+ + L Y +L+G
Sbjct: 13 LVTGGGEEVDVHSLGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGA 72
Query: 231 -----------ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTL 278
EIV +S D ++ ++ + MPWLALP+K+K R+ KL + +S +
Sbjct: 73 GAGAAAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRISNI 132
Query: 279 PTLVII-GPDGKTLHSNVAEAIEEHGVGA-FPFTPEKFAELAEIQRAKEESQTLESVLVS 336
P+L+ + GK + N I + G FP+ P+ F E+ ++
Sbjct: 133 PSLIFLDATTGKVVCRNGLLVIRDDPEGLEFPWGPKPFREV-----------------IA 175
Query: 337 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV 396
G L + NG + S L G + +YFSAHWCPPCR+ L+++Y+KIKE ++ E++
Sbjct: 176 GPL---LRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEII 232
Query: 397 FISSDRDQTSFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 455
F+S+DR + SF ++F MPWLA+P+ D AR++ L+R + + GIP L+ + P G IT++
Sbjct: 233 FVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQG 292
Query: 456 R 456
R
Sbjct: 293 R 293
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 569 | ||||||
| 147799889 | 572 | hypothetical protein VITISV_008818 [Viti | 0.994 | 0.989 | 0.731 | 0.0 | |
| 255568796 | 575 | nucleoredoxin, putative [Ricinus communi | 0.996 | 0.986 | 0.708 | 0.0 | |
| 356526803 | 570 | PREDICTED: probable nucleoredoxin 1-like | 0.984 | 0.982 | 0.706 | 0.0 | |
| 147792238 | 570 | hypothetical protein VITISV_043885 [Viti | 0.991 | 0.989 | 0.705 | 0.0 | |
| 359473224 | 570 | PREDICTED: probable nucleoredoxin 1-like | 0.991 | 0.989 | 0.707 | 0.0 | |
| 297840523 | 578 | DC1 domain-containing protein [Arabidops | 0.996 | 0.980 | 0.660 | 0.0 | |
| 217074414 | 570 | unknown [Medicago truncatula] gi|3885162 | 0.984 | 0.982 | 0.687 | 0.0 | |
| 18406743 | 578 | putative nucleoredoxin 1 [Arabidopsis th | 0.998 | 0.982 | 0.660 | 0.0 | |
| 383100975 | 578 | putative nucleoredoxin 1 [Arabidopsis ha | 0.996 | 0.980 | 0.656 | 0.0 | |
| 21592996 | 578 | PDI-like protein [Arabidopsis thaliana] | 0.998 | 0.982 | 0.660 | 0.0 |
| >gi|147799889|emb|CAN77321.1| hypothetical protein VITISV_008818 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/570 (73%), Positives = 500/570 (87%), Gaps = 4/570 (0%)
Query: 2 NMNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILA 60
N++G +HD+ SLL+ RDFL+R+NG QVK++SLKGK I LYFSASWCGPC+RFTP L
Sbjct: 5 NVDGV-AHDLVSLLTREDRDFLVRNNGHQVKVESLKGKKIWLYFSASWCGPCRRFTPKLV 63
Query: 61 EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120
E YNELS DFE+IFVSGD DDE+F GYFSKMPWLA+PFSDS+ RD+L+ELFKVMGIP+
Sbjct: 64 EAYNELSSNDDFEIIFVSGDNDDESFNGYFSKMPWLAIPFSDSDARDQLNELFKVMGIPN 123
Query: 121 LVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD 180
LV+LDE+GKVLS+ GV+II+EYGVE YPFT E+IKEMKE+EE A++EQSLRS+L S SRD
Sbjct: 124 LVMLDESGKVLSEDGVDIIQEYGVEAYPFTPEKIKEMKEKEETARKEQSLRSILVSQSRD 183
Query: 181 FVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240
+VIS+DG+K+ VS+LEGK +GL+FS+SSYKA EFTP LV+VYEKL+ KGESFEIV+ISL
Sbjct: 184 YVISTDGKKVPVSELEGKFVGLFFSLSSYKACLEFTPTLVDVYEKLRAKGESFEIVMISL 243
Query: 241 DDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE 300
DDEEESFK+ GSMPWLALPF+DKS EKLARYFELS LPTLV+IGPDGKTLHSNVAEAI+
Sbjct: 244 DDEEESFKKYFGSMPWLALPFRDKSCEKLARYFELSALPTLVVIGPDGKTLHSNVAEAIQ 303
Query: 301 EHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTI 360
EHG+ A+PFTPEKFAEL EI++AK E+QTLES+LVSGD DFV+GK+G K+PVSDL GK I
Sbjct: 304 EHGIQAYPFTPEKFAELEEIEKAKREAQTLESILVSGDRDFVIGKDGVKIPVSDLVGKNI 363
Query: 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALP 420
LLYFSAHWCPPCRAFLPKLI+AY+KIK ++E+ EV+FISSD+DQTSFDEFF GMPWLALP
Sbjct: 364 LLYFSAHWCPPCRAFLPKLIEAYQKIKTKDEAFEVIFISSDKDQTSFDEFFSGMPWLALP 423
Query: 421 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 480
FGD RKASLSR FKV GIP L+AIGP+GRT+T EAR+++ +HGA+AYPFTEE +KEI+ Q
Sbjct: 424 FGDKRKASLSRTFKVHGIPSLIAIGPTGRTVTTEARNLVMIHGADAYPFTEEHIKEIEAQ 483
Query: 481 YNEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALG 539
Y EMAKGWPE +KHALH EHELVL + VY C+GC+++G +W+F C+ECDF LHP CAL
Sbjct: 484 YEEMAKGWPEKMKHALHEEHELVLTKRRVYGCNGCEKQGHLWSFYCEECDFDLHPKCALE 543
Query: 540 EDKGTKDDKSEEQNPSKEGWRCDGGLCYKG 569
EDKG+KDD+ E+ +P EGW+CDG +CYK
Sbjct: 544 EDKGSKDDEMEKASPG-EGWKCDGEVCYKA 572
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568796|ref|XP_002525369.1| nucleoredoxin, putative [Ricinus communis] gi|223535332|gb|EEF37007.1| nucleoredoxin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/572 (70%), Positives = 485/572 (84%), Gaps = 5/572 (0%)
Query: 3 MNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAE 61
M + HD SLLSSS RD+LIR+NGDQV++DSLKGK +GLYFSASWCGPCQRFTP L E
Sbjct: 4 MVNGDYHDFVSLLSSSDRDYLIRNNGDQVEIDSLKGKKLGLYFSASWCGPCQRFTPTLVE 63
Query: 62 VYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121
VYNEL+ +GDFE++F++ DEDDE+F+ YFSKMPWLA+PFSDS+ RD+LDE+FKV GIPH
Sbjct: 64 VYNELAPKGDFEIVFITADEDDESFEEYFSKMPWLAIPFSDSDKRDRLDEIFKVQGIPHF 123
Query: 122 VILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDF 181
VILDENGKV S+ GVEII+EYGV+ YPFT ERIK +K QEE A+R QSLRS+L SRD+
Sbjct: 124 VILDENGKVSSESGVEIIQEYGVQCYPFTAERIKVLKGQEEEARRNQSLRSILVFGSRDY 183
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
VI+SDG+K+SVS+LEGKT+GLYFS+SSY + +FT L EVYEKLK KGE+FEIV ISLD
Sbjct: 184 VIASDGKKVSVSELEGKTVGLYFSLSSYTSCVDFTSTLAEVYEKLKAKGENFEIVFISLD 243
Query: 242 DEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEE 301
DEEE+F++ L +MPWLA PF DK EKL RYFELST+PTLV+IGPDGKTLHSNVAEAIEE
Sbjct: 244 DEEETFQQSLANMPWLAFPFNDKGCEKLVRYFELSTVPTLVVIGPDGKTLHSNVAEAIEE 303
Query: 302 HGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTIL 361
HGV A+PFTPEKFAELAE+++A+E +QTLESVLVSGD +FV+G++G K+PV+DL GK IL
Sbjct: 304 HGVQAYPFTPEKFAELAEMEKAREAAQTLESVLVSGDQNFVIGRDGAKIPVTDLVGKNIL 363
Query: 362 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPF 421
LYFSAHWCPPCRAFLPKL++AY +IK ++++ EV+FISSDRDQ SFDEFF GMPWLALPF
Sbjct: 364 LYFSAHWCPPCRAFLPKLVEAYHEIKTKDDAFEVIFISSDRDQASFDEFFSGMPWLALPF 423
Query: 422 GDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQY 481
GD RKASLSRKFKV GIPML+A+GP+GRTITKEAR ++ +HGA+AY FTEE +KEI+ +Y
Sbjct: 424 GDVRKASLSRKFKVQGIPMLIALGPTGRTITKEARSLVTLHGADAYLFTEEHLKEIEAKY 483
Query: 482 NEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGE 540
+MAKGWPE V HALH EHELVL R + CDGC+E G +W+F C+ECDF LHP CAL E
Sbjct: 484 EDMAKGWPEKVNHALHEEHELVLSRRMNFICDGCNEGGNIWSFHCEECDFDLHPKCALKE 543
Query: 541 DKGTKDDKSEEQN---PSKEGWRCDGGLCYKG 569
K T+D E++N SKEGW CDG +CYK
Sbjct: 544 GKETRDGGKEDENGEAVSKEGWICDGEVCYKA 575
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526803|ref|XP_003532006.1| PREDICTED: probable nucleoredoxin 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/565 (70%), Positives = 483/565 (85%), Gaps = 5/565 (0%)
Query: 8 SHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNEL 66
+HD+ SLLSS RDFL+R+NGDQVK+DSLKGK +GLYFSASWCGPCQ FTP L +VYNE+
Sbjct: 8 THDVVSLLSSPQRDFLLRNNGDQVKIDSLKGKKLGLYFSASWCGPCQTFTPTLVDVYNEV 67
Query: 67 SRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDE 126
+++GDF+++F++ DEDDE+F GYFSKMPWLA+PFSDS+TR +LDELF V GIPHL +LDE
Sbjct: 68 AKKGDFQIVFITADEDDESFNGYFSKMPWLAIPFSDSDTRSRLDELFHVRGIPHLALLDE 127
Query: 127 NGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSD 186
G V+++ GV++IREYGVEGYPFT RI+E+++QEE A+R QS+RS+L S SRDFVISSD
Sbjct: 128 AGNVVTEDGVDVIREYGVEGYPFTSARIQELRDQEEEARRNQSVRSLLVSPSRDFVISSD 187
Query: 187 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246
G+K VS+LEGKT+GLYF + S+ + ++FTP+LVEVYEKLK +GE+FE+VLI LDD+EES
Sbjct: 188 GKKTLVSELEGKTVGLYFCVKSFGSCSDFTPKLVEVYEKLKAQGENFEVVLIPLDDDEES 247
Query: 247 FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGA 306
FK L S+PWL+LPFKDK KLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE+HGV A
Sbjct: 248 FKELLESVPWLSLPFKDKICGKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEDHGVAA 307
Query: 307 FPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSA 366
+PFTPEKFAEL EI +AKE +QTLES+LVS D DFV+GK+G K+PVS+L GK +LLYFSA
Sbjct: 308 YPFTPEKFAELDEILKAKEAAQTLESILVSDDQDFVIGKDGVKIPVSELKGKVVLLYFSA 367
Query: 367 HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARK 426
HWCPPCRAFLPKLIDAY KIKE+ +LEVVFISSDRDQTSFDEFF GMPWLALPFGD+RK
Sbjct: 368 HWCPPCRAFLPKLIDAYNKIKEKGNALEVVFISSDRDQTSFDEFFAGMPWLALPFGDSRK 427
Query: 427 ASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 486
LSRKF+VSGIPMLVAI SG+T+T +ARD+++++GA+AYPFTEER+KEI+ + E AK
Sbjct: 428 KFLSRKFRVSGIPMLVAIASSGQTLTTKARDLVSLYGADAYPFTEERIKEIETEQEETAK 487
Query: 487 GWPENVKHALHEHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCAL-GEDK-GT 544
GWPE +KH LHEHELVL R VY CD C+EEG +W++ C +CDF LHP CAL EDK G+
Sbjct: 488 GWPEKLKHELHEHELVLTRRRVYYCDACNEEGHIWSYYCGDCDFDLHPKCALEKEDKEGS 547
Query: 545 KDDKSEEQNPSKEGWRCDGGLCYKG 569
KDD EE+ SK+ W CDG +C K
Sbjct: 548 KDDAKEEK--SKDEWVCDGEVCKKA 570
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147792238|emb|CAN59927.1| hypothetical protein VITISV_043885 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/568 (70%), Positives = 478/568 (84%), Gaps = 4/568 (0%)
Query: 4 NGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEV 62
+G+ HD+ S+LSS RD+LIR+NG+QVK+ SL+GK IGLYFSASWCGPC+RFTP L EV
Sbjct: 5 DGSAVHDVVSVLSSPNRDYLIRNNGNQVKITSLRGKKIGLYFSASWCGPCRRFTPELVEV 64
Query: 63 YNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLV 122
YN LS +GDFE+ FVS DEDDE FK YFS+MPWLA+PFSDS+TRD LDELF+V GIPH+V
Sbjct: 65 YNGLSLKGDFEITFVSADEDDEMFKEYFSEMPWLAIPFSDSDTRDHLDELFRVSGIPHIV 124
Query: 123 ILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFV 182
I+ ENGKVL+D GVEIIREYGVEG+PFT ERIKE+KEQEE AKREQSLRS+L S SRDFV
Sbjct: 125 IIGENGKVLTDSGVEIIREYGVEGFPFTSERIKELKEQEEVAKREQSLRSILVSDSRDFV 184
Query: 183 ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD 242
IS++G K+ +S LEG+ +GLYFS+SSYK +FT +LV+VY K+K GESFEIVLIS DD
Sbjct: 185 ISANGMKVPISKLEGRLVGLYFSLSSYKLCVDFTSKLVDVYAKVKAMGESFEIVLISFDD 244
Query: 243 EEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEH 302
+EESF GSMPW ALPFKD+S KLARYFELST+PTLV+IGPDGKTLHSNV EAIEE+
Sbjct: 245 DEESFNEGXGSMPWFALPFKDESCRKLARYFELSTVPTLVMIGPDGKTLHSNVVEAIEEY 304
Query: 303 GVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILL 362
G+ A+PFTP KFAEL EI++AK+E+QTLES+LVSG+ D+++GK+G KVPVSDL GK ILL
Sbjct: 305 GIQAYPFTPAKFAELEEIEKAKQEAQTLESILVSGNRDYLIGKHGVKVPVSDLVGKNILL 364
Query: 363 YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 422
YFSA WC PCRAFLPKL DAY KIK ++ EV+FISSDRDQTSFD+FF MPWLALPFG
Sbjct: 365 YFSAXWCSPCRAFLPKLTDAYHKIKAKDSGFEVIFISSDRDQTSFDDFFSEMPWLALPFG 424
Query: 423 DARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 482
D RK SLS+ FKV GIP +VAIGP+GRTIT +ARD++A HGA+AYPFT+ER++EI+ QY
Sbjct: 425 DERKESLSKMFKVQGIPKVVAIGPTGRTITTQARDLVADHGADAYPFTDERLQEIEAQY- 483
Query: 483 EMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGED 541
EMAKGWP+ + HALH EHEL L + +Y CDGCDEEG WAFSC+ECDF LHP CAL +
Sbjct: 484 EMAKGWPDKLSHALHEEHELALTQHQIYKCDGCDEEGHAWAFSCEECDFDLHPKCALEDG 543
Query: 542 KGTKDDKSEEQNPSKEGWRCDGGLCYKG 569
KGT+DD +E+ P +EGW CDG +C+K
Sbjct: 544 KGTEDDAMDEEKP-EEGWICDGKVCFKA 570
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473224|ref|XP_003631272.1| PREDICTED: probable nucleoredoxin 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/568 (70%), Positives = 478/568 (84%), Gaps = 4/568 (0%)
Query: 4 NGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEV 62
+G+ HD+ S+LSS RD+LIR+NG+QVK+ SL+GK IGLYFSASWCGPC+RFTP L EV
Sbjct: 5 DGSAVHDVVSVLSSPNRDYLIRNNGNQVKITSLRGKKIGLYFSASWCGPCRRFTPELVEV 64
Query: 63 YNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLV 122
YN LS +GDFE+ FVS DEDDE FK YFS+MPWLA+PFSDS+TRD LDELF+V GIPHLV
Sbjct: 65 YNGLSLKGDFEITFVSADEDDEMFKEYFSEMPWLAIPFSDSDTRDHLDELFRVSGIPHLV 124
Query: 123 ILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFV 182
I+ ENGKVL+D GVEIIREYGVEG+PFT ERIKE+KEQEE AKREQSLRS+L S SRDFV
Sbjct: 125 IIGENGKVLTDSGVEIIREYGVEGFPFTSERIKELKEQEEVAKREQSLRSILVSDSRDFV 184
Query: 183 ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD 242
IS++G K+ +S LEG+ +GLYFS+SSYK +FT +LV+VY K+K GESFEIVLIS DD
Sbjct: 185 ISANGMKVPISKLEGRLVGLYFSLSSYKLCVDFTSKLVDVYAKVKAMGESFEIVLISFDD 244
Query: 243 EEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEH 302
+EESF GSMP ALPFKD+S KLARYFELST+PTLV+IGPDGKTLHSNV EAIEE+
Sbjct: 245 DEESFNEGFGSMPCFALPFKDESCRKLARYFELSTVPTLVMIGPDGKTLHSNVVEAIEEY 304
Query: 303 GVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILL 362
G+ A+PFTP KFAEL EI++AK+E+QTLES+LVSG+ D+++GK+G KVPVSDL GK ILL
Sbjct: 305 GIQAYPFTPAKFAELEEIEKAKQEAQTLESILVSGNRDYLIGKHGVKVPVSDLVGKNILL 364
Query: 363 YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 422
YFSAHWC PCRAFLPKL DAY KIK ++ EV+FISSDRDQTSFD+FF MPWLALPFG
Sbjct: 365 YFSAHWCSPCRAFLPKLTDAYHKIKAKDSGFEVIFISSDRDQTSFDDFFSEMPWLALPFG 424
Query: 423 DARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 482
D RK SLS+ FKV GIP +VAIGP+GRTIT +ARD++A HGA+AYPFT+ER++EI+ QY
Sbjct: 425 DERKESLSKMFKVQGIPKVVAIGPTGRTITTQARDLVADHGADAYPFTDERLQEIEAQY- 483
Query: 483 EMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGED 541
EMAKGWP+ + HALH EHEL L + +Y CDGCDEEG WAFSC+ECDF LHP CAL +
Sbjct: 484 EMAKGWPDKLSHALHEEHELALTQHQIYKCDGCDEEGHAWAFSCEECDFDLHPKCALEDG 543
Query: 542 KGTKDDKSEEQNPSKEGWRCDGGLCYKG 569
KGT+DD +E+ P +EGW CDG +C+K
Sbjct: 544 KGTEDDAMDEEKP-EEGWICDGKVCFKA 570
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297840523|ref|XP_002888143.1| DC1 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333984|gb|EFH64402.1| DC1 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/571 (66%), Positives = 475/571 (83%), Gaps = 4/571 (0%)
Query: 3 MNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAE 61
+NG+++ D+ SLLSS ARDFL+R++G+QVK+DSL GK IGLYFSA+WCGPCQRFTP L E
Sbjct: 8 VNGSDALDLHSLLSSPARDFLVRNDGEQVKIDSLIGKKIGLYFSAAWCGPCQRFTPQLVE 67
Query: 62 VYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121
VYNELS + FE++FVSGDED+E+F YFSKMPWLAVPF+DSETRD+LDELFKV GIP+L
Sbjct: 68 VYNELSSKVGFEIVFVSGDEDEESFGDYFSKMPWLAVPFTDSETRDRLDELFKVRGIPNL 127
Query: 122 VILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDF 181
V++D++GK++++ GV +IR YG + YPFT E++KE+KE E+RA+REQ+LRSVL + SRDF
Sbjct: 128 VMVDDHGKLVNENGVGVIRSYGADAYPFTPEKMKEIKEDEDRARREQTLRSVLVTPSRDF 187
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
VIS DG K+ VS+LEGKTIGL FS++SY+ EFTP+LVE Y KLK E FEIVLISL+
Sbjct: 188 VISPDGNKVPVSELEGKTIGLLFSVASYRKCTEFTPKLVEFYTKLKENKEDFEIVLISLE 247
Query: 242 DEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEE 301
D+EESF ++ + PWL+LPF DKS KLAR+F L+TLPTLVI+GPDGKT HSNVAEAI++
Sbjct: 248 DDEESFNQEFKTKPWLSLPFNDKSASKLARHFMLATLPTLVILGPDGKTRHSNVAEAIDD 307
Query: 302 HGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTIL 361
+GV A+PFTPEKF EL EI++AK E+QTLES+LVSGDL++V+GK+G KV +SDL GK IL
Sbjct: 308 YGVLAYPFTPEKFEELKEIEKAKVEAQTLESLLVSGDLNYVLGKDGAKVLISDLVGKNIL 367
Query: 362 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPF 421
+YFSAHWCPPCRAF PKL++ YK+IKER+E+ E++FISSDRDQ SFDE++ MPWLALPF
Sbjct: 368 IYFSAHWCPPCRAFTPKLVEVYKQIKERDEAFELIFISSDRDQESFDEYYSQMPWLALPF 427
Query: 422 GDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQY 481
GD RK SL+R FKV GIPML A+GP+G+T+TKEARD++ HGAEAYPFTEER+KEI+ +Y
Sbjct: 428 GDPRKTSLARTFKVGGIPMLAALGPTGKTVTKEARDLVVAHGAEAYPFTEERLKEIEAKY 487
Query: 482 NEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGE 540
++MAK WP+ VKH LH EHEL L R VY+CD C+EEG +W++ CDEC+F LH CAL E
Sbjct: 488 DDMAKEWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYQCDECNFDLHAKCALKE 547
Query: 541 DKGTKDDKS--EEQNPSKEGWRCDGGLCYKG 569
D D++ E + S +GW CDG +C K
Sbjct: 548 DTKADGDEAVKEGGSESTDGWVCDGDVCTKA 578
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217074414|gb|ACJ85567.1| unknown [Medicago truncatula] gi|388516263|gb|AFK46193.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/564 (68%), Positives = 466/564 (82%), Gaps = 4/564 (0%)
Query: 8 SHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNEL 66
+H++ S+LSSS RDFL+R+ GDQVK+DSLKGK +G YFSASWCGPC+ FTP L EV +EL
Sbjct: 9 THNVHSILSSSDRDFLLRNTGDQVKIDSLKGKKLGFYFSASWCGPCRGFTPKLVEVCDEL 68
Query: 67 SRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDE 126
S G FEV+FVS D+DDEAFK YFSKMPWLA+PFSDSETR +LDELF V GIPHL +LDE
Sbjct: 69 SPNGGFEVVFVSADKDDEAFKSYFSKMPWLAIPFSDSETRGRLDELFHVNGIPHLALLDE 128
Query: 127 NGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSD 186
GKV+++ GV+IIR YG E YPFT +R++E+K+ EE AKR QSLRS+L S SRDF+ISSD
Sbjct: 129 AGKVITEDGVDIIRVYGAEAYPFTSKRVQELKDIEEEAKRNQSLRSILASRSRDFLISSD 188
Query: 187 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246
G +I + +LEGKT+GL+F +SY+A FT +L EVY+KLK GE+FE+V I LDDEE++
Sbjct: 189 GNEIPIPELEGKTVGLHFCATSYRACTLFTQKLKEVYKKLKENGENFEVVFIPLDDEEDA 248
Query: 247 FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGA 306
FK++L S PWL+LP KDK+ KL +YFELS LPTLVIIGPDGKTLH N AEAIE+HGV A
Sbjct: 249 FKKELESAPWLSLPLKDKTCAKLIQYFELSELPTLVIIGPDGKTLHPNAAEAIEDHGVDA 308
Query: 307 FPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSA 366
+PFTPEKF+EL EI +AKE SQTLESVLVSGD DFV+ K+G K+PVS+L GKT+LLYFSA
Sbjct: 309 YPFTPEKFSELDEIAKAKEASQTLESVLVSGDQDFVIDKDGKKIPVSELVGKTVLLYFSA 368
Query: 367 HWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDAR 425
HWCPPCRAFLPKLI+AY KIK R N++LEVVFISSDRDQ SF+EFF GMPWLALPFGD R
Sbjct: 369 HWCPPCRAFLPKLIEAYHKIKARNNDALEVVFISSDRDQESFNEFFAGMPWLALPFGDTR 428
Query: 426 KASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 485
K LSRKFKVSGIP LVAIGPSG+T+TKEAR ++ ++GA+AYPFTE+R+KEI+ Q +++A
Sbjct: 429 KEFLSRKFKVSGIPELVAIGPSGQTVTKEARGLVGLYGADAYPFTEKRIKEIEAQKDDIA 488
Query: 486 KGWPENVKHALHEHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGEDKGTK 545
KGWPE V H HEHELVL R VY CDGC +EG W++ C ECDF LHPNCALG DKG+
Sbjct: 489 KGWPEKVTHETHEHELVLSRRNVYCCDGCKDEGDTWSYLCAECDFDLHPNCALG-DKGSI 547
Query: 546 DDKSEEQNPSKEGWRCDGGLCYKG 569
+ EE+ P K+GW CDG +C K
Sbjct: 548 NGAKEEEKP-KDGWVCDGDVCTKA 570
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18406743|ref|NP_564756.1| putative nucleoredoxin 1 [Arabidopsis thaliana] gi|75318691|sp|O80763.1|NRX1_ARATH RecName: Full=Probable nucleoredoxin 1; Short=AtNrx1 gi|3249084|gb|AAC24068.1| Similar to red-1 (related to thioredoxin) gene gb|X92750 from Mus musculus. ESTs gb|AA712687 and gb|Z37223 come from this gene [Arabidopsis thaliana] gi|17529294|gb|AAL38874.1| unknown protein [Arabidopsis thaliana] gi|21436119|gb|AAM51306.1| unknown protein [Arabidopsis thaliana] gi|332195563|gb|AEE33684.1| putative nucleoredoxin 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/572 (66%), Positives = 474/572 (82%), Gaps = 4/572 (0%)
Query: 2 NMNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILA 60
+NG ++ D+ SLLSS ARDFL+R++G+QVK+DSL GK IGLYFSA+WCGPCQRFTP L
Sbjct: 7 QVNGDDAQDLHSLLSSPARDFLVRNDGEQVKVDSLLGKKIGLYFSAAWCGPCQRFTPQLV 66
Query: 61 EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120
EVYNELS + FE++FVSGDED+E+F YF KMPWLAVPF+DSETRD+LDELFKV GIP+
Sbjct: 67 EVYNELSSKVGFEIVFVSGDEDEESFGDYFRKMPWLAVPFTDSETRDRLDELFKVRGIPN 126
Query: 121 LVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD 180
LV++D++GK++++ GV +IR YG + YPFT E++KE+KE E+RA+R Q+LRSVL + SRD
Sbjct: 127 LVMVDDHGKLVNENGVGVIRSYGADAYPFTPEKMKEIKEDEDRARRGQTLRSVLVTPSRD 186
Query: 181 FVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240
FVIS DG K+ VS+LEGKTIGL FS++SY+ E TP+LVE Y KLK E FEIVLISL
Sbjct: 187 FVISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKEDFEIVLISL 246
Query: 241 DDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE 300
+D+EESF +D + PWLALPF DKS KLAR+F LSTLPTLVI+GPDGKT HSNVAEAI+
Sbjct: 247 EDDEESFNQDFKTKPWLALPFNDKSGSKLARHFMLSTLPTLVILGPDGKTRHSNVAEAID 306
Query: 301 EHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTI 360
++GV A+PFTPEKF EL E+++AK E+QTLES+LVSGDL++V+GK+G KV VSDL GKTI
Sbjct: 307 DYGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKDGAKVLVSDLVGKTI 366
Query: 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALP 420
L+YFSAHWCPPCRAF PKL++ YK+IKERNE+ E++FISSDRDQ SFDE++ MPWLALP
Sbjct: 367 LMYFSAHWCPPCRAFTPKLVEVYKQIKERNEAFELIFISSDRDQESFDEYYSQMPWLALP 426
Query: 421 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 480
FGD RKASL++ FKV GIPML A+GP+G+T+TKEARD++ HGA+AYPFTEER+KEI+ +
Sbjct: 427 FGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFTEERLKEIEAK 486
Query: 481 YNEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALG 539
Y+E+AK WP+ VKH LH EHEL L R VY+CD C+EEG +W++ CDECDF LH CAL
Sbjct: 487 YDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALN 546
Query: 540 EDKGTKDDKSEEQ--NPSKEGWRCDGGLCYKG 569
ED D++ + + SK+GW C+G +C K
Sbjct: 547 EDTKENGDEAVKVGGDESKDGWVCEGNVCTKA 578
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|383100975|emb|CCD74518.1| putative nucleoredoxin 1 [Arabidopsis halleri subsp. halleri] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/571 (65%), Positives = 473/571 (82%), Gaps = 4/571 (0%)
Query: 3 MNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAE 61
+NG +S D+ SLLSS ARDFL+R++G+QVK+DSL GK IGLYFSA+WCGPCQRFTP L E
Sbjct: 8 VNGGDSQDLHSLLSSPARDFLVRNDGEQVKIDSLIGKKIGLYFSAAWCGPCQRFTPQLVE 67
Query: 62 VYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121
VYNELS + FE++FVSGDED+E+F YFSKMPWLAVPF+DSE+RD+LDELFKV GIP+L
Sbjct: 68 VYNELSSKVGFEIVFVSGDEDEESFGDYFSKMPWLAVPFTDSESRDRLDELFKVRGIPNL 127
Query: 122 VILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDF 181
V++D++GK++++ GV +IR YG + YPFT E++KE+KE E+RA+REQ+LRSVL + SRDF
Sbjct: 128 VMVDDHGKLVNENGVGVIRSYGADAYPFTPEKMKEIKEDEDRARREQTLRSVLVTPSRDF 187
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
VIS DG K+ VS+LEGKTIGL FS++SY+ EFTP+LVE Y KLK E FEIVLISLD
Sbjct: 188 VISPDGNKVPVSELEGKTIGLLFSVASYRKCTEFTPKLVEFYTKLKENKEDFEIVLISLD 247
Query: 242 DEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEE 301
D+EESF ++ + PWL+L F DKS KLAR+F L+T+PTLVI+GPDGKT HSNVAEAI++
Sbjct: 248 DDEESFNQEFKTKPWLSLLFNDKSASKLARHFMLATVPTLVILGPDGKTRHSNVAEAIDD 307
Query: 302 HGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTIL 361
+GV A+PFTPEKF EL EI++AK E+QTLES+LVSGDL++V+GK+G KV +SDL GK IL
Sbjct: 308 YGVLAYPFTPEKFEELKEIEKAKVEAQTLESLLVSGDLNYVLGKDGAKVLISDLVGKNIL 367
Query: 362 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPF 421
+YFSAHWCPPCR F PKL++ YK+IKER+E+ E++FIS+DRDQ SFDE++ MPWLALPF
Sbjct: 368 IYFSAHWCPPCRTFTPKLVEVYKQIKERDEAFELIFISNDRDQESFDEYYSQMPWLALPF 427
Query: 422 GDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQY 481
GD+RK SL+R FKV GIPML A+GP+G+T+TKEARD++ HGAEAYPFTEER+KEI+ +Y
Sbjct: 428 GDSRKTSLARTFKVGGIPMLAALGPTGKTVTKEARDLVVAHGAEAYPFTEERLKEIEAKY 487
Query: 482 NEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGE 540
++MAK WP+ VKH LH EHEL L R VY+CD C+EEG +W++ CDECDF LH CAL E
Sbjct: 488 DDMAKEWPKKVKHVLHEEHELQLTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALKE 547
Query: 541 DKGTKDDKS--EEQNPSKEGWRCDGGLCYKG 569
D D++ E + S +GW CDG +C K
Sbjct: 548 DTKANGDEAVKEGDSESTDGWVCDGNVCTKA 578
|
Source: Arabidopsis halleri subsp. halleri Species: Arabidopsis halleri Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21592996|gb|AAM64945.1| PDI-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/572 (66%), Positives = 473/572 (82%), Gaps = 4/572 (0%)
Query: 2 NMNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILA 60
+NG ++ D+ SLLSS ARDFL+R++G+QVK+DSL GK IGLYFSA+WCGPCQRFTP L
Sbjct: 7 QVNGDDAQDLHSLLSSPARDFLVRNDGEQVKVDSLLGKKIGLYFSAAWCGPCQRFTPQLV 66
Query: 61 EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120
EVYNELS + FE++FVSGDED+E+F YFSKMPWLAVPF+DSETRD+LDELFKV GIP+
Sbjct: 67 EVYNELSSKVGFEIVFVSGDEDEESFGDYFSKMPWLAVPFTDSETRDRLDELFKVRGIPN 126
Query: 121 LVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD 180
LV++D++GK++++ GV +IR YG + YPFT E++KE+KE E+RA+REQ+LRSVL + SRD
Sbjct: 127 LVMVDDHGKLVNENGVGVIRSYGADAYPFTPEKMKEIKEDEDRARREQTLRSVLVTPSRD 186
Query: 181 FVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240
FVIS DG K+ VS+LEGKTIGL FS++SY+ E TP+LVE Y KLK E FEIVLISL
Sbjct: 187 FVISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKEDFEIVLISL 246
Query: 241 DDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE 300
+D+EESF +D + PWLALPF DKS KLAR+F LSTLPTLVI+GPDGK HSNVAEAI+
Sbjct: 247 EDDEESFNQDFKTKPWLALPFNDKSGSKLARHFMLSTLPTLVILGPDGKIRHSNVAEAID 306
Query: 301 EHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTI 360
++GV A+PFTPEKF EL E+++AK E+QTLES+LVSGDL++V+GK+G KV VSDL GKTI
Sbjct: 307 DYGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKDGAKVLVSDLVGKTI 366
Query: 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALP 420
L+YFSAHWCPPCRAF PKL++ YK+IKERNE+ E++FISSDRDQ SFDE++ MPWLALP
Sbjct: 367 LMYFSAHWCPPCRAFTPKLVEVYKQIKERNEAFELIFISSDRDQESFDEYYSQMPWLALP 426
Query: 421 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 480
FGD RKASL++ FKV GIPML A+GP+G+T+TKEARD++ HGA+AYPFTEER+KEI+ +
Sbjct: 427 FGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFTEERLKEIEAK 486
Query: 481 YNEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALG 539
Y+E+AK WP+ VKH LH EHEL L R VY+CD C+EEG +W + CDECDF LH CAL
Sbjct: 487 YDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWCYHCDECDFDLHAKCALN 546
Query: 540 EDKGTKDDKSEEQ--NPSKEGWRCDGGLCYKG 569
E D++ + + SK+GW C+G +C K
Sbjct: 547 EYTKENGDEAVKVGGDESKDGWVCEGNVCTKA 578
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 569 | ||||||
| TAIR|locus:2195623 | 578 | AT1G60420 [Arabidopsis thalian | 0.994 | 0.979 | 0.663 | 4.2e-214 | |
| TAIR|locus:2128141 | 392 | AT4G31240 [Arabidopsis thalian | 0.652 | 0.946 | 0.407 | 3.9e-76 | |
| UNIPROTKB|A6QLU8 | 435 | NXN "Nucleoredoxin" [Bos tauru | 0.332 | 0.434 | 0.37 | 6.2e-30 | |
| RGD|1310489 | 435 | Nxn "nucleoredoxin" [Rattus no | 0.332 | 0.434 | 0.365 | 4.8e-29 | |
| MGI|MGI:109331 | 435 | Nxn "nucleoredoxin" [Mus muscu | 0.332 | 0.434 | 0.365 | 2.9e-29 | |
| UNIPROTKB|Q6DKJ4 | 435 | NXN "Nucleoredoxin" [Homo sapi | 0.332 | 0.434 | 0.365 | 2.2e-29 | |
| ZFIN|ZDB-GENE-050522-75 | 418 | nxn "nucleoredoxin" [Danio rer | 0.332 | 0.452 | 0.34 | 9e-25 | |
| UNIPROTKB|Q6GM16 | 414 | nxn "Nucleoredoxin" [Xenopus l | 0.240 | 0.330 | 0.421 | 1e-28 | |
| UNIPROTKB|I3LEF2 | 328 | NXN "Uncharacterized protein" | 0.332 | 0.576 | 0.365 | 2.2e-29 | |
| UNIPROTKB|F1NG23 | 328 | NXN "Uncharacterized protein" | 0.332 | 0.576 | 0.345 | 1.7e-27 |
| TAIR|locus:2195623 AT1G60420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2069 (733.4 bits), Expect = 4.2e-214, P = 4.2e-214
Identities = 378/570 (66%), Positives = 474/570 (83%)
Query: 3 MNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAE 61
+NG ++ D+ SLLSS ARDFL+R++G+QVK+DSL GK IGLYFSA+WCGPCQRFTP L E
Sbjct: 8 VNGDDAQDLHSLLSSPARDFLVRNDGEQVKVDSLLGKKIGLYFSAAWCGPCQRFTPQLVE 67
Query: 62 VYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121
VYNELS + FE++FVSGDED+E+F YF KMPWLAVPF+DSETRD+LDELFKV GIP+L
Sbjct: 68 VYNELSSKVGFEIVFVSGDEDEESFGDYFRKMPWLAVPFTDSETRDRLDELFKVRGIPNL 127
Query: 122 VILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDF 181
V++D++GK++++ GV +IR YG + YPFT E++KE+KE E+RA+R Q+LRSVL + SRDF
Sbjct: 128 VMVDDHGKLVNENGVGVIRSYGADAYPFTPEKMKEIKEDEDRARRGQTLRSVLVTPSRDF 187
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
VIS DG K+ VS+LEGKTIGL FS++SY+ E TP+LVE Y KLK E FEIVLISL+
Sbjct: 188 VISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKEDFEIVLISLE 247
Query: 242 DEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEE 301
D+EESF +D + PWLALPF DKS KLAR+F LSTLPTLVI+GPDGKT HSNVAEAI++
Sbjct: 248 DDEESFNQDFKTKPWLALPFNDKSGSKLARHFMLSTLPTLVILGPDGKTRHSNVAEAIDD 307
Query: 302 HGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTIL 361
+GV A+PFTPEKF EL E+++AK E+QTLES+LVSGDL++V+GK+G KV VSDL GKTIL
Sbjct: 308 YGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKDGAKVLVSDLVGKTIL 367
Query: 362 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPF 421
+YFSAHWCPPCRAF PKL++ YK+IKERNE+ E++FISSDRDQ SFDE++ MPWLALPF
Sbjct: 368 MYFSAHWCPPCRAFTPKLVEVYKQIKERNEAFELIFISSDRDQESFDEYYSQMPWLALPF 427
Query: 422 GDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQY 481
GD RKASL++ FKV GIPML A+GP+G+T+TKEARD++ HGA+AYPFTEER+KEI+ +Y
Sbjct: 428 GDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFTEERLKEIEAKY 487
Query: 482 NEMAKGWPENVKHALHE-HELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGE 540
+E+AK WP+ VKH LHE HEL L R VY+CD C+EEG +W++ CDECDF LH CAL E
Sbjct: 488 DEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNE 547
Query: 541 DKGTKDDKSEEQ--NPSKEGWRCDGGLCYK 568
D D++ + + SK+GW C+G +C K
Sbjct: 548 DTKENGDEAVKVGGDESKDGWVCEGNVCTK 577
|
|
| TAIR|locus:2128141 AT4G31240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 152/373 (40%), Positives = 221/373 (59%)
Query: 170 LRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGK 229
L S+L + +F++S G ++ + + GKTI L+FS + +FTP L+++YE L+ +
Sbjct: 17 LYSILAAEGIEFLLSHSG-EVPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYENLQNR 75
Query: 230 GESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
GE EI+ +S D + SF MPWLA+PF KL + +S +P+LV + D
Sbjct: 76 GEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLSLLNKLRDKYGISRIPSLVPLYSDEI 135
Query: 290 TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGK 349
++ +V IE++G AFPFT ++ EL I +K LE +L ++VV +NG K
Sbjct: 136 SVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVVARNGSK 195
Query: 350 VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNE-SLEVVFISSDRDQTSFD 408
V VS L GKTI LYF AHWCPP R+F +L+D Y ++ ++ S EV+ IS+DRD F+
Sbjct: 196 VLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSFEVILISTDRDSREFN 255
Query: 409 EFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYP 468
MPWLA+P+ D + L R F V IP LV IGP +T+T AR+M++++G+ ++P
Sbjct: 256 INMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTTNAREMVSLYGSRSFP 315
Query: 469 FTEERMKEIDGQYNEMAKGWPENVKHALHEHELVLDRCGVYSCDGCDEEGRVWAFSCDEC 528
FTE R+ E+ + P VK HEHEL LD Y CD C ++GR WAFSC+ C
Sbjct: 316 FTESRIVELKACLKKEGDSLPRKVKDNKHEHELKLDMAKAYVCDFCKKQGRFWAFSCNAC 375
Query: 529 DFCLHPNCALGED 541
D+ LHP C E+
Sbjct: 376 DYDLHPTCVEEEE 388
|
|
| UNIPROTKB|A6QLU8 NXN "Nucleoredoxin" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 336 (123.3 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 74/200 (37%), Positives = 113/200 (56%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGD-FEVIFVSGD 80
L+RSNG ++ SL+G +G+YFSA WC PC+ T +L E Y ++ G FE+IFVS D
Sbjct: 178 LLRSNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSAD 237
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+++FK YFS+MPWLAVP++D R +L+ L+ + GIP L++LD G+V++ G VE++
Sbjct: 238 RSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVL 297
Query: 140 REYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT 199
+ G+P+ + + E+ + E VL S D S+ K + + K
Sbjct: 298 NDEDCRGFPWHPKPVLELSDSNAVQLNEGPCL-VLFVDSEDDG-ESEAAKQLIQPIAEKI 355
Query: 200 IGLYFSMSSYKASAEFTPRL 219
I + YKA E P L
Sbjct: 356 I------AKYKAKEEEAPLL 369
|
|
| RGD|1310489 Nxn "nucleoredoxin" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 4.8e-29, P = 4.8e-29
Identities = 73/200 (36%), Positives = 112/200 (56%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGD-FEVIFVSGD 80
L+R+NG ++ SL+G +G+YFSA WC PC+ T +L E Y ++ G FE+IFVS D
Sbjct: 178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSAD 237
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+E+FK YFS+MPWLAVP++D R +L+ L+ + GIP L++LD G+V++ G VE++
Sbjct: 238 RSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVL 297
Query: 140 REYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT 199
+ +P+ + + E+ + E VL S D S+ K + + K
Sbjct: 298 NDEDCREFPWHPKPVLELSDSNAVQLNEGPCL-VLFVDSEDDG-ESEAAKQLIQPIAEKI 355
Query: 200 IGLYFSMSSYKASAEFTPRL 219
I + YKA E P L
Sbjct: 356 I------AKYKAKEEEAPLL 369
|
|
| MGI|MGI:109331 Nxn "nucleoredoxin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 2.9e-29, P = 2.9e-29
Identities = 73/200 (36%), Positives = 113/200 (56%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGD 80
L+R+NG ++ SL+G +G+YFSA WC PC+ T +L E Y ++ G +FE+IFVS D
Sbjct: 178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSAD 237
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+E+FK YFS+MPWLAVP++D R +L+ L+ + GIP L++LD G+V++ G VE++
Sbjct: 238 RSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVL 297
Query: 140 REYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT 199
+ +P+ + + E+ + E VL S D S+ K + + K
Sbjct: 298 NDEDCREFPWHPKPVLELSDSNAVQLNEGPCL-VLFVDSEDDG-ESEAAKQLIQPIAEKI 355
Query: 200 IGLYFSMSSYKASAEFTPRL 219
I + YKA E P L
Sbjct: 356 I------AKYKAKEEEAPLL 369
|
|
| UNIPROTKB|Q6DKJ4 NXN "Nucleoredoxin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 2.2e-29, P = 2.2e-29
Identities = 73/200 (36%), Positives = 115/200 (57%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGD 80
L+R+NG ++ SL+G +G+YFSA WC PC+ T +L E Y ++ G +FE+IFVS D
Sbjct: 178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSAD 237
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+E+FK YFS+MPWLAVP++D R +L+ L+ + GIP L++LD G+V++ G VE++
Sbjct: 238 RSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVL 297
Query: 140 REYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT 199
+ +P+ + + E+ + A+ + VL S D S+ K + + K
Sbjct: 298 NDEDCREFPWHPKPVLELSDSNA-AQLNEGPCLVLFVDSEDDG-ESEAAKQLIQPIAEKI 355
Query: 200 IGLYFSMSSYKASAEFTPRL 219
I + YKA E P L
Sbjct: 356 I------AKYKAKEEEAPLL 369
|
|
| ZFIN|ZDB-GENE-050522-75 nxn "nucleoredoxin" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 9.0e-25, P = 9.0e-25
Identities = 68/200 (34%), Positives = 105/200 (52%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGD-FEVIFVSGD 80
L+R+N +L+G +G+YFSA WC PC+ T +L E Y ++ G FE++FVS D
Sbjct: 161 LLRNNRQTTDSTALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVKETGQKFEIVFVSAD 220
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+E+F YFS+MPWLAVP+SD R +L+ L+ + GIP L++LD G +++ G VEI+
Sbjct: 221 RSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGHMITRQGRVEIL 280
Query: 140 REYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT 199
+ +P+ + E+ E E + + + D K + + K
Sbjct: 281 NDPDCGLFPWHPRPVLELSESNAVQLHEGPCLVLFVDAEEEGEL--DPAKELIQPIAEKI 338
Query: 200 IGLYFSMSSYKASAEFTPRL 219
M+ YKA E TP L
Sbjct: 339 ------MAKYKAKEEETPLL 352
|
|
| UNIPROTKB|Q6GM16 nxn "Nucleoredoxin" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 1.0e-28, P = 1.0e-28
Identities = 59/140 (42%), Positives = 93/140 (66%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGD-FEVIFVSGD 80
LIR+N + +L+G +G+YFSA WC PC+ T +L E Y ++ G FE++ VS D
Sbjct: 157 LIRNNSQSQESSTLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSAD 216
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+E+FK YFS+MPWLAVP+SD R +L+ L+ + GIP+L+ILD G+V++ G VE++
Sbjct: 217 RSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDPKGEVITRQGRVEVL 276
Query: 140 REYGVEGYPFTVERIKEMKE 159
R+ + +P+ + + E+ E
Sbjct: 277 RDIDCKEFPWHPKPVVELTE 296
|
|
| UNIPROTKB|I3LEF2 NXN "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 2.2e-29, P = 2.2e-29
Identities = 73/200 (36%), Positives = 113/200 (56%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGD-FEVIFVSGD 80
L+R+NG ++ SL+G +G+YFSA WC PC+ T +L E Y ++ G FE+IFVS D
Sbjct: 71 LLRNNGPALESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSAD 130
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+++FK YFS+MPWLAVP++D R +L+ L+ + GIP L++LD G+V++ G VE++
Sbjct: 131 RSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVL 190
Query: 140 REYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT 199
+ G+P+ + + E+ + E VL S D S+ K + + K
Sbjct: 191 NDEDCRGFPWHPKPVLELSDSNAVQLNEGPCL-VLFVDSEDDG-ESEAAKQLIQPIAEKI 248
Query: 200 IGLYFSMSSYKASAEFTPRL 219
I + YKA E P L
Sbjct: 249 I------AKYKAKEEEAPLL 262
|
|
| UNIPROTKB|F1NG23 NXN "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 314 (115.6 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 69/200 (34%), Positives = 111/200 (55%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGD-FEVIFVSGD 80
L+R+NG + +L+G +G+YFSA WC PC+ T +L E Y ++ G FE++FVS D
Sbjct: 71 LLRNNGQTLDSSALEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEILFVSAD 130
Query: 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEII 139
+++FK YFS+MPW+AVP++D R +L+ L+ + GIP L++LD G+V++ G VE++
Sbjct: 131 RSEDSFKQYFSEMPWVAVPYADEARRSRLNRLYGIQGIPTLIVLDSQGEVITRQGRVEVL 190
Query: 140 REYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT 199
+ +P+ + + E+ + E VL S D S+ K + + K
Sbjct: 191 NDIECREFPWHPKPVLELTDSNAVQLNEGPCL-VLFVDSEDDG-ESEAAKQLIQPIAEKI 248
Query: 200 IGLYFSMSSYKASAEFTPRL 219
I + YKA E P L
Sbjct: 249 I------AKYKAKEEEAPLL 262
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7Y0E8 | NRX11_ORYSJ | 1, ., 8, ., 1, ., 8 | 0.5828 | 0.9824 | 0.9824 | yes | no |
| O80763 | NRX1_ARATH | 1, ., 8, ., 1, ., 8 | 0.6608 | 0.9982 | 0.9826 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 569 | |||
| cd03009 | 131 | cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l | 2e-70 | |
| cd03009 | 131 | cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l | 4e-62 | |
| cd02964 | 132 | cd02964, TryX_like_family, Tryparedoxin (TryX)-lik | 7e-58 | |
| cd02964 | 132 | cd02964, TryX_like_family, Tryparedoxin (TryX)-lik | 2e-51 | |
| cd03009 | 131 | cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l | 4e-46 | |
| cd02964 | 132 | cd02964, TryX_like_family, Tryparedoxin (TryX)-lik | 8e-37 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 5e-27 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 7e-27 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 4e-22 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 2e-18 | |
| cd03008 | 146 | cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like | 6e-18 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 3e-17 | |
| cd03008 | 146 | cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like | 4e-14 | |
| cd03008 | 146 | cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like | 1e-13 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 3e-10 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 7e-10 | |
| PRK03147 | 173 | PRK03147, PRK03147, thiol-disulfide oxidoreductase | 3e-09 | |
| pfam13098 | 105 | pfam13098, Thioredoxin_2, Thioredoxin-like domain | 1e-08 | |
| pfam13098 | 105 | pfam13098, Thioredoxin_2, Thioredoxin-like domain | 3e-08 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 1e-07 | |
| pfam08534 | 142 | pfam08534, Redoxin, Redoxin | 1e-07 | |
| cd02947 | 93 | cd02947, TRX_family, TRX family; composed of two g | 1e-07 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 2e-07 | |
| COG0526 | 127 | COG0526, TrxA, Thiol-disulfide isomerase and thior | 7e-07 | |
| cd02947 | 93 | cd02947, TRX_family, TRX family; composed of two g | 9e-07 | |
| PRK03147 | 173 | PRK03147, PRK03147, thiol-disulfide oxidoreductase | 1e-06 | |
| pfam08534 | 142 | pfam08534, Redoxin, Redoxin | 2e-06 | |
| COG0526 | 127 | COG0526, TrxA, Thiol-disulfide isomerase and thior | 1e-05 | |
| PRK03147 | 173 | PRK03147, PRK03147, thiol-disulfide oxidoreductase | 2e-05 | |
| cd03011 | 123 | cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, | 5e-05 | |
| pfam07649 | 30 | pfam07649, C1_3, C1-like domain | 7e-05 | |
| cd03010 | 127 | cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (a | 2e-04 | |
| cd02967 | 114 | cd02967, mauD, Methylamine utilization (mau) D fam | 2e-04 | |
| TIGR01068 | 101 | TIGR01068, thioredoxin, thioredoxin | 3e-04 | |
| pfam00085 | 104 | pfam00085, Thioredoxin, Thioredoxin | 3e-04 | |
| cd03011 | 123 | cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, | 5e-04 | |
| cd01659 | 69 | cd01659, TRX_superfamily, Thioredoxin (TRX) superf | 0.001 | |
| cd02950 | 142 | cd02950, TxlA, TRX-like protein A (TxlA) family; T | 0.001 | |
| cd02968 | 142 | cd02968, SCO, SCO (an acronym for Synthesis of Cyt | 0.001 | |
| cd02971 | 140 | cd02971, PRX_family, Peroxiredoxin (PRX) family; c | 0.001 | |
| pfam13899 | 81 | pfam13899, Thioredoxin_7, Thioredoxin-like | 0.002 | |
| cd02967 | 114 | cd02967, mauD, Methylamine utilization (mau) D fam | 0.003 | |
| cd02950 | 142 | cd02950, TxlA, TRX-like protein A (TxlA) family; T | 0.004 | |
| cd02961 | 101 | cd02961, PDI_a_family, Protein Disulfide Isomerase | 0.004 | |
| pfam03107 | 30 | pfam03107, C1_2, C1 domain | 0.004 |
| >gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 2e-70
Identities = 70/131 (53%), Positives = 100/131 (76%), Gaps = 1/131 (0%)
Query: 340 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 399
DF++ +GGKVPVS L GKT+ LYFSA WCPPCRAF PKL++ Y+K+KE ++ E+VFIS
Sbjct: 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFIS 60
Query: 400 SDRDQTSFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDM 458
DRD+ SF+++F MPWLA+PF D R++ L+R FK+ GIP L+ + G +T +AR++
Sbjct: 61 WDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDAREL 120
Query: 459 IAVHGAEAYPF 469
+ +GA+A+PF
Sbjct: 121 VLEYGADAFPF 131
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131 |
| >gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 4e-62
Identities = 70/131 (53%), Positives = 97/131 (74%), Gaps = 2/131 (1%)
Query: 21 DFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNEL-SRQGDFEVIFVS 78
DFL+R++G +V + SL+GK +GLYFSASWC PC+ FTP L E Y +L +FE++F+S
Sbjct: 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFIS 60
Query: 79 GDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEI 138
D D+E+F YFSKMPWLAVPFSD E R +L+ FK+ GIP L+ILD +G+V++ E+
Sbjct: 61 WDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDAREL 120
Query: 139 IREYGVEGYPF 149
+ EYG + +PF
Sbjct: 121 VLEYGADAFPF 131
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131 |
| >gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 7e-58
Identities = 66/128 (51%), Positives = 87/128 (67%), Gaps = 3/128 (2%)
Query: 345 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
G VPVS L GKT+ LYFSA WCPPCRAF PKL++ Y+K+KE ++ E+VF+S DR +
Sbjct: 5 DGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSE 64
Query: 405 TSFDEFFKGM-PWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMI-AV 461
SF+E+F M PWLA+PF D + L ++FKV GIP LV + P G +T ARD +
Sbjct: 65 ESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEED 124
Query: 462 HGAEAYPF 469
GA A+P+
Sbjct: 125 PGACAFPW 132
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132 |
| >gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 2e-51
Identities = 62/133 (46%), Positives = 86/133 (64%), Gaps = 5/133 (3%)
Query: 21 DFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNEL-SRQGDFEVIFVS 78
FL+ G V + +L+GK +GLYFSASWC PC+ FTP L E Y +L +FE++FVS
Sbjct: 1 LFLLDGEG-VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVS 59
Query: 79 GDEDDEAFKGYFSKM-PWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVE 137
D +E+F YFS+M PWLAVPF D E R+ L++ FKV GIP LV+L +G V++ +
Sbjct: 60 RDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARD 119
Query: 138 IIRE-YGVEGYPF 149
+ E G +P+
Sbjct: 120 EVEEDPGACAFPW 132
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132 |
| >gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 4e-46
Identities = 66/131 (50%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 180 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS 239
DF++ +DG K+ VS LEGKT+GLYFS S FTP+LVE YEKLK G++FEIV IS
Sbjct: 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFIS 60
Query: 240 LDDEEESFKRDLGSMPWLALPFKDKS-REKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298
D +EESF MPWLA+PF D+ R +L R F++ +PTL+I+ DG+ + ++ E
Sbjct: 61 WDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDAREL 120
Query: 299 IEEHGVGAFPF 309
+ E+G AFPF
Sbjct: 121 VLEYGADAFPF 131
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131 |
| >gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 8e-37
Identities = 63/133 (47%), Positives = 87/133 (65%), Gaps = 4/133 (3%)
Query: 180 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS 239
F++ +G + VS LEGKT+GLYFS S FTP+LVE YEKLK +G++FEIV +S
Sbjct: 1 LFLLDGEG-VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVS 59
Query: 240 LDDEEESFKRDLGSM-PWLALPFKDKS-REKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297
D EESF M PWLA+PF+D+ RE L + F++ +PTLV++ PDG + +N +
Sbjct: 60 RDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARD 119
Query: 298 AIEE-HGVGAFPF 309
+EE G AFP+
Sbjct: 120 EVEEDPGACAFPW 132
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 5e-27
Identities = 46/93 (49%), Positives = 64/93 (68%), Gaps = 4/93 (4%)
Query: 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMP--WLA 97
+ LYF ASWC PC+ FTP L E+Y +L ++ E+++VS D D+E +K Y KMP WL
Sbjct: 4 VLLYFWASWCPPCRAFTPELKELYEKL-KKPKVEIVYVSLDRDEEEWKKYLKKMPKDWLN 62
Query: 98 VPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
VPF D E R++L L+ V IP LV+LD++G+V
Sbjct: 63 VPFGDKE-RNELLRLYGVKAIPTLVLLDKDGRV 94
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 7e-27
Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 4/95 (4%)
Query: 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP- 415
GK +LLYF A WCPPCRAF P+L + Y+K+K+ +E+V++S DRD+ + ++ K MP
Sbjct: 1 GKVVLLYFWASWCPPCRAFTPELKELYEKLKKPK--VEIVYVSLDRDEEEWKKYLKKMPK 58
Query: 416 -WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 449
WL +PFGD + L R + V IP LV + GR
Sbjct: 59 DWLNVPFGDKERNELLRLYGVKAIPTLVLLDKDGR 93
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 4e-22
Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMP- 255
GK + LYF S FTP L E+YEKLK EIV +SLD +EE +K+ L MP
Sbjct: 1 GKVVLLYFWASWCPPCRAFTPELKELYEKLKKPK--VEIVYVSLDRDEEEWKKYLKKMPK 58
Query: 256 -WLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
WL +PF DK R +L R + + +PTLV++ DG+
Sbjct: 59 DWLNVPFGDKERNELLRLYGVKAIPTLVLLDKDGR 93
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-18
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 27 NGDQVKLDSLKGKIGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD-E 84
+G V L LKGK+ L F ASWC PC+ P L + E G EV+ V+ D+DD
Sbjct: 8 DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG-VEVVGVNVDDDDPA 66
Query: 85 AFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
A K + K D +L + + V G+P ++D +G++
Sbjct: 67 AVKAFLKKYGITFPVLLD--PDGELAKAYGVRGLPTTFLIDRDGRI 110
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 6e-18
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 352 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIK-----ERNESLEVVFISSDRDQTS 406
V+ L + +LL+F A P C+ F PKL D + ++ +R+ L +V++S D+ +
Sbjct: 20 VARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQ 79
Query: 407 FDEFFKGMP--WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGA 464
+ F K MP WL LPF D + L +F V +P +V + P G + A D I G
Sbjct: 80 QESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGP 139
Query: 465 EAY 467
+
Sbjct: 140 ACF 142
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 3e-17
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
+G V +SDL GK +L+ F A WCPPCRA +P+L K+ K+ +EVV ++ D D
Sbjct: 8 DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDP 65
Query: 406 S-FDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453
+ F K + P L++ + V G+P I GR +
Sbjct: 66 AAVKAFLKKYG-ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-14
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 192 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKG-----KGESFEIVLISLDDEEES 246
V+ LE + + L+F F P+L + + +L + +V +S+D E+
Sbjct: 20 VARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQ 79
Query: 247 FKRDLGSMP--WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGV 304
+ L MP WL LPF+D+ R +L F + LPT+V++ PDG L +N + I G
Sbjct: 80 QESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGP 139
Query: 305 GAF 307
F
Sbjct: 140 ACF 142
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146 |
| >gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-13
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 23 LIRSNGDQVKLDS-------LKGKIGL-YFSASWCGPCQRFTPILAEVYNELS------R 68
LI++N D+ +LD+ L+ ++ L +F A CQ F P L + + L+ R
Sbjct: 3 LIKNNSDRDELDTEREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDR 62
Query: 69 QGDFEVIFVSGDEDDEAFKGYFSKMP--WLAVPFSDSETRDKLDELFKVMGIPHLVILDE 126
+++VS D+ ++ + + MP WL +PF D E R +L+ F V +P +V+L
Sbjct: 63 SAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFED-EFRRELEAQFSVEELPTVVVLKP 121
Query: 127 NGKVLSDGGVEIIREYG 143
+G VL+ V+ I G
Sbjct: 122 DGDVLAANAVDEILRLG 138
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-10
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 340 DF-VVGKNGGKVPVSDLAGKTILLYF-SAHWCPPCRAFLPKLIDAYKKIKERNESLEVVF 397
DF + +G +V +SD GK ++L+F + P C LP L D Y++ K+ +EV+
Sbjct: 7 DFELPDLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLG--VEVLG 64
Query: 398 ISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAI 444
+S D S +F + + L P +++ + V +A+
Sbjct: 65 VSVD-SPESHKKFAEKLG-LPFPLLSDPDGEVAKAYGVLNEEEGLAL 109
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-10
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 28/130 (21%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTP-------RLVEVYEKLKGKGE 231
DF + DG+++S+SD +GK + L+F Y +FTP L ++YE+ K G
Sbjct: 7 DFELPDLDGKEVSLSDYKGKWVVLFF----Y--PKDFTPVCTTELPALADLYEEFKKLG- 59
Query: 232 SFEIVLISLDDEE--ESFKRDLG-SMPWLALPFKDKSRE-----KLARYFELSTLPTLVI 283
E++ +S+D E + F LG P L+ D E + E L T +
Sbjct: 60 -VEVLGVSVDSPESHKKFAEKLGLPFPLLS----DPDGEVAKAYGVLNEEEGLALRTTFV 114
Query: 284 IGPDGKTLHS 293
I PDGK +
Sbjct: 115 IDPDGKIRYI 124
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 17/145 (11%)
Query: 17 SSARDFLIRS-NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
A +F++ G +++L LKGK + L F +WC PC++ P + E+Y + +G E+
Sbjct: 39 KEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG-VEI 97
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134
I V+ DE + A K F L P + + R +D + V +P ++D++GKV
Sbjct: 98 IAVNVDETELAVKN-FVNRYGLTFPVAIDKGRQVID-AYGVGPLPTTFLIDKDGKV---- 151
Query: 135 GVEIIR----EYGVEGYPFTVERIK 155
V++I E +E Y +E+IK
Sbjct: 152 -VKVITGEMTEEQLEEY---LEKIK 172
|
Length = 173 |
| >gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-08
Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 416
GK +L+ F+ CP C+ +L+ + ++ V++++ D +
Sbjct: 5 GKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSK----------EV 54
Query: 417 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453
+ L+RK+ V G P +V + G+ + +
Sbjct: 55 TDFDGETLSEKELARKYGVRGTPTIVFLDGDGKEVAR 91
|
Length = 105 |
| >gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-08
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSR--QGDFEVIFVSGDEDDE--AFKGYFSKMPWLA 97
+ F+ C C++ L + ++ + +F VI+V+ D+ E F G LA
Sbjct: 10 VVFTDPDCPYCKKLHKELLK-DPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSEKELA 68
Query: 98 VPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V G P +V LD +GK +
Sbjct: 69 -------------RKYGVRGTPTIVFLDGDGKEV 89
|
Length = 105 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-07
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGKIG-LYF-SASWCGPCQRFTPILAEVYNELSRQGDFEVI 75
A DF L +G +V L KGK L+F + C P LA++Y E + G EV+
Sbjct: 5 APDFELPDLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLG-VEVL 63
Query: 76 FVSGDEDDEAFKGYFSKMPWLAVP-FSDSETRDKLDELFKVM------GIPHLVILDENG 128
VS D + K F++ L P SD + ++ + + V+ + ++D +G
Sbjct: 64 GVSVDSPESHKK--FAEKLGLPFPLLSDPD--GEVAKAYGVLNEEEGLALRTTFVIDPDG 119
Query: 129 KV 130
K+
Sbjct: 120 KI 121
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|219888 pfam08534, Redoxin, Redoxin | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 25/150 (16%)
Query: 18 SARDFLIRSNGDQVKLDSLKGKIGLYFS--ASWCGPCQRFTPILAEVYNELSRQGDFEVI 75
+ +G V L KGK + ++C C P L ++ +G +V+
Sbjct: 7 DFTLPDVALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKG-VDVV 65
Query: 76 FVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG--------IPHLVILDEN 127
V+ D +++K L P D+ K G P ++DE+
Sbjct: 66 AVNASNDPFFVMNFWAKEG-LKYPV----LADRDGAFTKAYGLTEDAGLRTPRYFLIDED 120
Query: 128 GKVLSDGGVEIIREYGVEGYPFTVERIKEM 157
GK + V P V + +
Sbjct: 121 GK---------VVYLEVGPDPGDVSDAEAV 141
|
This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142 |
| >gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-07
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 28/90 (31%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
+ F A WCGPC+ P+L E+ E + + V DE+ E + Y
Sbjct: 15 VDFWAPWCGPCKAIAPVLEELAEE---YPKVKFVKVDVDENPELAEEY------------ 59
Query: 102 DSETRDKLDELFKVMGIPHLVILDENGKVL 131
V IP + +NGK +
Sbjct: 60 ------------GVRSIPTFLFF-KNGKEV 76
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 186 DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 245
DG+ +S+SDL+GK + + F S P L + ++ K G E+V +++DD++
Sbjct: 8 DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDP 65
Query: 246 ----SFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295
+F + G + P D E LA+ + + LPT +I DG+ +V
Sbjct: 66 AAVKAFLKKYG----ITFPVLLDPDGE-LAKAYGVRGLPTTFLIDRDGRIRARHV 115
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 48.4 bits (114), Expect = 7e-07
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 28 GDQVKLDSLKGKIGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA- 85
G + L LKGK L F A WC PC+ P+L E+ E + + V + D A
Sbjct: 22 GAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAA 81
Query: 86 -FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
F +P L + F D + ++D L +P ++D G++L
Sbjct: 82 EFGVAVRSIPTLLL-FKDGK---EVDRLVGGKVLPKEALIDALGELL 124
|
Length = 127 |
| >gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 9e-07
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 27/90 (30%)
Query: 355 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414
+ K +++ F A WC PC+A P L +++ E ++ V + D +
Sbjct: 8 KSAKPVVVDFWAPWCGPCKAIAPVL----EELAEEYPKVKFVKVDVDENP---------- 53
Query: 415 PWLALPFGDARKASLSRKFKVSGIPMLVAI 444
L+ ++ V IP +
Sbjct: 54 -------------ELAEEYGVRSIPTFLFF 70
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93 |
| >gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 340 DFVVGK-NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 398
+FV+ G K+ + DL GK + L F WC PC +P + + Y K KE + +E++ +
Sbjct: 43 NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE--KGVEIIAV 100
Query: 399 SSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDM 458
+ D + + F L P + + + V +P I G+ + +M
Sbjct: 101 NVDETELAVKNFVNRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEM 159
Query: 459 IAVHGAEAYPFTEERMKE 476
TEE+++E
Sbjct: 160 -----------TEEQLEE 166
|
Length = 173 |
| >gnl|CDD|219888 pfam08534, Redoxin, Redoxin | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 343 VGKNGGKVPVSDLAGKTILLYF-SAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401
V +G V +SD GK ++L F +CP C A P L K K + ++VV +++
Sbjct: 13 VALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKG--VDVVAVNAS 70
Query: 402 RDQTSFDEF 410
D F
Sbjct: 71 NDPFFVMNF 79
|
This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142 |
| >gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 44.9 bits (105), Expect = 1e-05
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 347 GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 403
G + +S+L GK +L+ F A WCPPCRA P L + ++ E + V + D
Sbjct: 22 GAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD 78
|
Length = 127 |
| >gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
+FV++ +G+KI + DL+GK + L F + K + P + E+Y K K KG EI+ +
Sbjct: 43 NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAV 100
Query: 239 SLDDEE---ESFKRDLGSMPWLALPFK-DKSREKLARYFELSTLPTLVIIGPDGK 289
++D+ E ++F G L P DK R+ + Y + LPT +I DGK
Sbjct: 101 NVDETELAVKNFVNRYG----LTFPVAIDKGRQVIDAY-GVGPLPTTFLIDKDGK 150
|
Length = 173 |
| >gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-05
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 27 NGDQVKLDSLKGKIGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG-DEDDE 84
+G+Q L+SL GK L YF A+WC C+ +P + ++ D+ V+ V+ DD
Sbjct: 9 DGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQL------AADYPVVSVALRSGDDG 62
Query: 85 AFKGYFSKMP--WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
A + K + + D + + V P +VI+D G V
Sbjct: 63 AVARFMQKKGYGFPVINDPDGV----ISARWGVSVTPAIVIVDPGGIV 106
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123 |
| >gnl|CDD|219497 pfam07649, C1_3, C1-like domain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 7e-05
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 511 CDGCDEEG-RVWAFSCDECDFCLHPNCA 537
C+ C +SC ECDF LH +CA
Sbjct: 3 CNACGLPIDGDPFYSCSECDFVLHEDCA 30
|
This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130. Length = 30 |
| >gnl|CDD|239308 cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 34 DSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92
LKGK L ASWC PC+ P+L L+RQG + ++ ++ E + ++
Sbjct: 21 ADLKGKPYLLNVWASWCAPCREEHPVL----MALARQGRVPIYGINYKDNPENALAWLAR 76
Query: 93 M--PWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
P+ AV D + R +D V G+P ++D +G +
Sbjct: 77 HGNPYAAV-GFDPDGRVGID--LGVYGVPETFLIDGDGIIR 114
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. Length = 127 |
| >gnl|CDD|239265 cd02967, mauD, Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 347 GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEV-VFISSDRDQT 405
GG P G+ LL+F + CP C+ LP + + R E+ + V ++SD ++
Sbjct: 16 GGISP-----GRPTLLFFLSPTCPVCKKLLPVI-----RSIARAEADWLDVVLASDGEKA 65
Query: 406 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453
F K A P+ A L ++VS +P V + +G K
Sbjct: 66 EHQRFLKKHGLEAFPY--VLSAELGMAYQVSKLPYAVLLDEAGVIAAK 111
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. Length = 114 |
| >gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 3e-04
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 27/87 (31%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F A WCGPC+ PIL E+ E + V FV + D+
Sbjct: 21 FWAPWCGPCKMIAPILEELAKEYEGK----VKFVKLNVDENP------------------ 58
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKV 130
+ + + IP L++ +NGK
Sbjct: 59 ----DIAAKYGIRSIPTLLLF-KNGKE 80
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101 |
| >gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
+ F A WCGPC+ P ++ E V F D D+
Sbjct: 23 VDFYAPWCGPCKALAPEYEKLAQEYKDD----VKFAKVDADENP 62
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104 |
| >gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 21/101 (20%)
Query: 355 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS------SDRDQTSF- 407
L+GK +L+YF A WCP CR P + + + +S D F
Sbjct: 18 LSGKPVLVYFWATWCPVCRFTSPTVNQL---------AADYPVVSVALRSGDDGAVARFM 68
Query: 408 DEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 448
+ G P + P +S ++ VS P +V + P G
Sbjct: 69 QKKGYGFPVINDP-----DGVISARWGVSVTPAIVIVDPGG 104
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123 |
| >gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.001
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90
+ F A WC CQ P+LAE+ L++ FE + V D E +
Sbjct: 2 VLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRY 49
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69 |
| >gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 24/86 (27%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F A WC CQ P +A++ + Q +F + ++ D WL
Sbjct: 27 FYADWCTVCQEMAPDVAKLKQKYGDQVNF--VMLNVDNPK-----------WL------- 66
Query: 104 ETRDKLDELFKVMGIPHLVILDENGK 129
++D ++V GIPH V LD G
Sbjct: 67 ---PEIDR-YRVDGIPHFVFLDREGN 88
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. Length = 142 |
| >gnl|CDD|239266 cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 339 LDFV-VGKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKER-NESLEV 395
DF ++G V +SDL GK +L+YF CP C L L A K++ + ++V
Sbjct: 3 PDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQV 62
Query: 396 VFISSD--RD 403
VFIS D RD
Sbjct: 63 VFISVDPERD 72
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II. Length = 142 |
| >gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 38/146 (26%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSY-KASAEFTP-------RLVEVYEKLKGKG 230
DF + ++DG ++S+SD +GK + L+F Y K FTP ++ E+ G
Sbjct: 4 DFTLPATDGGEVSLSDFKGKWVVLFF----YPKD---FTPVCTTELCAFRDLAEEFAKGG 56
Query: 231 ESFEIVLISLDDEE--ESFKRDLGSMPWLALPFK---DKSREKLAR----YFELSTLPTL 281
E++ +S+D +++ G L F D E A+ E S L
Sbjct: 57 --AEVLGVSVDSPFSHKAWAEKEGG-----LNFPLLSDPDGE-FAKAYGVLIEKSAGGGL 108
Query: 282 -----VIIGPDGKTLHSNVAEAIEEH 302
II PDGK + V
Sbjct: 109 AARATFIIDPDGKIRYVEVEPLPTGR 134
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140 |
| >gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 24/84 (28%), Positives = 27/84 (32%), Gaps = 25/84 (29%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
+ F A WC CQ DF D K K L V
Sbjct: 22 VDFGADWCPTCQAL-------------DRDF--------LSDPRVKALAEKFVLLRV--- 57
Query: 102 DSETRDKLDELFKVMGIPHLVILD 125
D TRD L G+PH+V LD
Sbjct: 58 DVTTRDPNLLLDGQ-GVPHVVFLD 80
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 81 |
| >gnl|CDD|239265 cd02967, mauD, Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.003
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
L+F + C C++ P++ + + +V+ S D + + + K A P+
Sbjct: 26 LFFLSPTCPVCKKLLPVIRSI--ARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYV 82
Query: 102 DSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134
S +L ++V +P+ V+LDE G + + G
Sbjct: 83 LSA---ELGMAYQVSKLPYAVLLDEAGVIAAKG 112
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. Length = 114 |
| >gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 30/109 (27%)
Query: 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFDEFFKGMP 415
GK L+ F A WC C+ P + K+K++ + + V ++ D +
Sbjct: 20 GKPTLVEFYADWCTVCQEMAPDV----AKLKQKYGDQVNFVMLNVDNPK----------- 64
Query: 416 WLALPFGDARKASLSRKFKVSGIPMLVAIG----PSGRTITKEARDMIA 460
WL +++V GIP V + G++I + + ++A
Sbjct: 65 WL----------PEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLA 103
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. Length = 142 |
| >gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.004
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
F A WCG C+ P ++ EL G V
Sbjct: 22 FYAPWCGHCKALAPEYEKLAKELKGDGKVVV 52
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101 |
| >gnl|CDD|202539 pfam03107, C1_2, C1 domain | Back alignment and domain information |
|---|
Score = 34.5 bits (80), Expect = 0.004
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 509 YSCDGCDEE-GRVWAFSCDECDFCLHPNCA 537
+ C C + + ++C +C F LH CA
Sbjct: 1 FWCSVCRRKIDGFYFYTCKKCCFTLHVRCA 30
|
This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins. Length = 30 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 569 | |||
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 99.97 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.96 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.93 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.91 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.9 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.88 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.88 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.87 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.84 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 99.84 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 99.81 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.79 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.79 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.79 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.78 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.78 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.76 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 99.76 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.76 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.76 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.76 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.75 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.75 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.75 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.75 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.75 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.74 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.74 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.74 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.74 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.74 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.73 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.73 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.73 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.73 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.73 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.72 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.72 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.71 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.71 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.7 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.7 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.7 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.7 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.7 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.7 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.7 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.7 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.7 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.69 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.69 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.68 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.68 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 99.68 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.68 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.68 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 99.67 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.67 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 99.67 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 99.67 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.67 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.66 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 99.66 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.66 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.66 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.65 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.65 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.64 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.64 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.63 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.63 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 99.63 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.63 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.62 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.62 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 99.61 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.61 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.61 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 99.61 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 99.6 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.6 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 99.59 | |
| PRK15000 | 200 | peroxidase; Provisional | 99.59 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.59 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.59 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 99.59 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 99.58 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.58 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 99.57 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.57 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.57 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 99.57 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.56 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 99.55 | |
| PRK15000 | 200 | peroxidase; Provisional | 99.55 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 99.54 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.54 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.54 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 99.53 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 99.53 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 99.52 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.51 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.5 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 99.5 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.49 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.48 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.47 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 99.47 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.46 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.46 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.46 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.44 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.44 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.43 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.41 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.4 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.4 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.4 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.39 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.38 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.38 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.38 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.37 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.36 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.35 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.35 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.34 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.34 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.33 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.33 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.33 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.32 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.32 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.32 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.32 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.32 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.32 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 99.31 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 99.3 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.3 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.3 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.29 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.29 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.29 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.28 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.27 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.27 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.27 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.27 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.27 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.26 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.25 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.25 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.24 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.24 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.24 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.24 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.24 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.23 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.23 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.23 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.23 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.22 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.22 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.21 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.21 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.21 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.2 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.2 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.2 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.2 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.2 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.2 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.19 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.19 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.19 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.17 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 99.17 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.17 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 99.16 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.16 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.16 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.16 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.16 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.15 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 99.14 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.14 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.13 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.13 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.13 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.13 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.13 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.12 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.12 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.12 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.12 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.11 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.11 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.1 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.09 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 99.09 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.09 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 99.08 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 99.08 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.06 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 99.06 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 99.06 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 99.04 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.03 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 99.03 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 99.03 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 99.03 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.02 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 98.99 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 98.98 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 98.98 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 98.97 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 98.97 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 98.97 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 98.96 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 98.95 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.93 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.92 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 98.88 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.87 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.87 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 98.87 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.87 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 98.85 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 98.84 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.79 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 98.78 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.78 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.78 | |
| KOG0855 | 211 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.78 | |
| KOG0852 | 196 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.77 | |
| KOG2792 | 280 | consensus Putative cytochrome C oxidase assembly p | 98.76 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 98.75 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 98.75 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.74 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.74 | |
| KOG0855 | 211 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.74 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 98.73 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.72 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 98.71 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.7 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 98.69 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.68 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.66 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.65 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.64 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 98.64 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.63 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 98.63 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.62 | |
| KOG2792 | 280 | consensus Putative cytochrome C oxidase assembly p | 98.59 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.58 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.54 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.51 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.51 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.45 | |
| KOG1651 | 171 | consensus Glutathione peroxidase [Posttranslationa | 98.45 | |
| PF07649 | 30 | C1_3: C1-like domain; InterPro: IPR011424 This sho | 98.44 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 98.41 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 98.38 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.37 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 98.32 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.24 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 98.22 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.22 | |
| KOG0852 | 196 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.19 | |
| smart00594 | 122 | UAS UAS domain. | 98.18 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 98.17 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.16 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 98.16 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 98.15 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 98.15 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.14 | |
| KOG0854 | 224 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.1 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 98.08 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 98.05 | |
| smart00594 | 122 | UAS UAS domain. | 98.04 | |
| PF03107 | 30 | C1_2: C1 domain; InterPro: IPR004146 This short do | 98.02 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 98.02 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 98.0 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 97.99 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 97.98 | |
| KOG1651 | 171 | consensus Glutathione peroxidase [Posttranslationa | 97.96 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 97.94 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 97.9 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 97.88 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.88 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 97.87 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.86 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 97.85 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 97.84 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 97.78 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 97.75 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.73 | |
| KOG0854 | 224 | consensus Alkyl hydroperoxide reductase, thiol spe | 97.72 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.65 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 97.61 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 97.6 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 97.58 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 97.54 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 97.52 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 97.51 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.44 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 97.44 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 97.34 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 97.29 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 97.23 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 97.2 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 97.19 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 97.16 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 97.15 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 97.1 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.08 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 97.07 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 97.01 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 96.97 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 96.96 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 96.96 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 96.93 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 96.91 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 96.88 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 96.73 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 96.73 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 96.7 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 96.69 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 96.57 | |
| KOG0913 | 248 | consensus Thiol-disulfide isomerase and thioredoxi | 96.54 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 96.53 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 96.52 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 96.49 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 96.45 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 96.45 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 96.43 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 96.38 | |
| cd03072 | 111 | PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second | 96.29 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 96.27 | |
| cd02340 | 43 | ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre | 96.21 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 96.12 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 96.11 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 96.03 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 96.03 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 95.97 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 95.85 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 95.76 | |
| cd03073 | 111 | PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s | 95.73 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 95.69 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 95.69 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 95.61 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 95.51 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 95.5 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 95.48 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 95.46 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 95.43 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 95.42 | |
| cd02339 | 45 | ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre | 95.37 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 95.32 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 95.3 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 95.21 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 95.14 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 95.06 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 95.04 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 94.99 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 94.99 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 94.98 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 94.95 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 94.76 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 94.62 | |
| PF01216 | 383 | Calsequestrin: Calsequestrin; InterPro: IPR001393 | 94.57 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 94.56 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 94.51 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 94.43 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 94.38 | |
| PF05176 | 252 | ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th | 94.31 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 94.26 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 94.12 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 94.09 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 94.08 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 94.03 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 93.95 | |
| KOG0541 | 171 | consensus Alkyl hydroperoxide reductase/peroxiredo | 93.89 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 93.87 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 93.82 | |
| PRK10954 | 207 | periplasmic protein disulfide isomerase I; Provisi | 93.64 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 93.59 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 93.45 | |
| COG1331 | 667 | Highly conserved protein containing a thioredoxin | 93.44 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 93.33 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 93.32 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 93.18 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 93.17 | |
| KOG1672 | 211 | consensus ATP binding protein [Posttranslational m | 92.96 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 92.68 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 92.56 | |
| KOG0913 | 248 | consensus Thiol-disulfide isomerase and thioredoxi | 92.41 | |
| cd02249 | 46 | ZZ Zinc finger, ZZ type. Zinc finger present in dy | 92.19 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 92.18 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 92.1 | |
| KOG1752 | 104 | consensus Glutaredoxin and related proteins [Postt | 92.05 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 92.02 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 91.92 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 91.06 | |
| KOG2603 | 331 | consensus Oligosaccharyltransferase, gamma subunit | 91.02 | |
| PF05176 | 252 | ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th | 90.97 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 90.86 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 90.83 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 90.58 | |
| KOG1672 | 211 | consensus ATP binding protein [Posttranslational m | 90.47 | |
| PRK10824 | 115 | glutaredoxin-4; Provisional | 90.33 | |
| cd03031 | 147 | GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d | 89.7 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 89.59 | |
| KOG1752 | 104 | consensus Glutaredoxin and related proteins [Postt | 89.59 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 89.57 | |
| PF00130 | 53 | C1_1: Phorbol esters/diacylglycerol binding domain | 89.14 | |
| PF05768 | 81 | DUF836: Glutaredoxin-like domain (DUF836); InterPr | 89.07 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 88.84 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 88.33 | |
| cd02335 | 49 | ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present | 87.63 | |
| PF13911 | 115 | AhpC-TSA_2: AhpC/TSA antioxidant enzyme | 87.56 | |
| PF05768 | 81 | DUF836: Glutaredoxin-like domain (DUF836); InterPr | 87.32 | |
| PF13778 | 118 | DUF4174: Domain of unknown function (DUF4174) | 87.31 | |
| PRK10824 | 115 | glutaredoxin-4; Provisional | 87.05 | |
| COG4545 | 85 | Glutaredoxin-related protein [Posttranslational mo | 86.96 | |
| COG4545 | 85 | Glutaredoxin-related protein [Posttranslational mo | 86.26 | |
| cd02341 | 48 | ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present | 85.59 | |
| PF13778 | 118 | DUF4174: Domain of unknown function (DUF4174) | 84.47 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 84.46 | |
| cd00029 | 50 | C1 Protein kinase C conserved region 1 (C1) . Cyst | 84.44 | |
| PRK10954 | 207 | periplasmic protein disulfide isomerase I; Provisi | 84.31 | |
| PF13831 | 36 | PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. | 84.29 | |
| cd02343 | 48 | ZZ_EF Zinc finger, ZZ type. Zinc finger present in | 83.76 | |
| PRK12759 | 410 | bifunctional gluaredoxin/ribonucleoside-diphosphat | 83.39 | |
| KOG3507 | 62 | consensus DNA-directed RNA polymerase, subunit RPB | 83.23 | |
| KOG2603 | 331 | consensus Oligosaccharyltransferase, gamma subunit | 82.95 | |
| PF10571 | 26 | UPF0547: Uncharacterised protein family UPF0547; I | 82.24 | |
| cd02342 | 43 | ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre | 80.98 | |
| PRK12759 | 410 | bifunctional gluaredoxin/ribonucleoside-diphosphat | 80.37 |
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=257.51 Aligned_cols=340 Identities=24% Similarity=0.365 Sum_probs=216.5
Q ss_pred ccCCceecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCC
Q 008336 18 SARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPW 95 (569)
Q Consensus 18 ~~pdf~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~ 95 (569)
++...++.+++..+...-.... +||.||||||+||++++|++.++++.+++.+ .+.+..|++...
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~------------- 88 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE------------- 88 (493)
T ss_pred CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-------------
Confidence 3445555555555555444556 9999999999999999999999999999875 567777766644
Q ss_pred cccccCCchhHHHHHHhcCCCCccEEEEECCCCcE-EEcCCcce--------eecccCCCCCc-cHHHHHHHHHHHH---
Q 008336 96 LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV-LSDGGVEI--------IREYGVEGYPF-TVERIKEMKEQEE--- 162 (569)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i-~~~~~~~~--------~~~~~~~~~~~-~~~~i~~~~~~~~--- 162 (569)
..++..|+|+++||+.++ ++|+. ..+.|.+. ..+.++...+. +.+.+..++....
T Consensus 89 -----------~~~~~~y~v~gyPTlkiF-rnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~v 156 (493)
T KOG0190|consen 89 -----------SDLASKYEVRGYPTLKIF-RNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVV 156 (493)
T ss_pred -----------hhhHhhhcCCCCCeEEEE-ecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEE
Confidence 369999999999999999 88985 66666542 12223222221 2233333332210
Q ss_pred -----------------HHHhhccccccccc----------------------------------------------CCC
Q 008336 163 -----------------RAKREQSLRSVLTS----------------------------------------------HSR 179 (569)
Q Consensus 163 -----------------~~~~~~~l~~~~~~----------------------------------------------~~~ 179 (569)
+....+.+.+.+++ ...
T Consensus 157 ig~F~d~~~~~~~~~~~a~~l~~d~~F~~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~ 236 (493)
T KOG0190|consen 157 IGFFKDLESLAESFFDAASKLRDDYKFAHTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSL 236 (493)
T ss_pred EEEecccccchHHHHHHHHhccccceeeccCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcc
Confidence 00111111111111 011
Q ss_pred ceeecCCCceee-eccccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCccc
Q 008336 180 DFVISSDGRKIS-VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLA 258 (569)
Q Consensus 180 d~~~~~~~~~~~-~~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~ 258 (569)
+++...+.+... ++...-+.-..+|....|.......+.+.+++++++++ +.|+.+|.+.
T Consensus 237 plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~-----l~Fi~~d~e~-------------- 297 (493)
T KOG0190|consen 237 PLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGK-----LRFILIDPES-------------- 297 (493)
T ss_pred cccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhcccc-----eEEEEEChHH--------------
Confidence 111111110000 00000022233344444445566666777777777664 5566554332
Q ss_pred ccCCchhHHHHHhhcccC--CCc-eEEEECCCC-CchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhh
Q 008336 259 LPFKDKSREKLARYFELS--TLP-TLVIIGPDG-KTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVL 334 (569)
Q Consensus 259 ~~~~d~~~~~l~~~f~v~--~~P-tlvi~~~~g-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 334 (569)
..+.++.||+. ..| .+++++.++ ++.... -.++.+.++.|......+..++.++|+.
T Consensus 298 -------~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~------------e~~~~~~ie~f~~~~l~Gk~~p~~kSqp 358 (493)
T KOG0190|consen 298 -------FARVLEFFGLEEEQLPIRAVILNEDGSKYPLEE------------EELDQENIESFVKDFLDGKVKPHLKSQP 358 (493)
T ss_pred -------hhHHHHhcCcccccCCeeEEeeccccccccCcc------------ccccHHHHHHHHHHHhcCccccccccCC
Confidence 45688999997 456 444554443 333221 1457778999999999999999999999
Q ss_pred ccCCcc----cee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHH
Q 008336 335 VSGDLD----FVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 409 (569)
Q Consensus 335 ~~~~~~----f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~ 409 (569)
++.+.+ .++ ..+...+.+++ +|.|||.||||||+||+++.|.+++|++++++. -.||...+|.+.+
T Consensus 359 iPe~~~~~pVkvvVgknfd~iv~de--~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~---~~vviAKmDaTaN---- 429 (493)
T KOG0190|consen 359 IPEDNDRSPVKVVVGKNFDDIVLDE--GKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD---ENVVIAKMDATAN---- 429 (493)
T ss_pred CCcccccCCeEEEeecCHHHHhhcc--ccceEEEEcCcccchhhhhhhHHHHHHHHhcCC---CCcEEEEeccccc----
Confidence 887643 344 88888888887 899999999999999999999999999999874 4677777887654
Q ss_pred HHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCC
Q 008336 410 FFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 448 (569)
Q Consensus 410 ~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G 448 (569)
++ ....+.++||++++-.++
T Consensus 430 ------------------d~-~~~~~~~fPTI~~~pag~ 449 (493)
T KOG0190|consen 430 ------------------DV-PSLKVDGFPTILFFPAGH 449 (493)
T ss_pred ------------------cC-ccccccccceEEEecCCC
Confidence 12 345677899999995544
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=260.38 Aligned_cols=367 Identities=19% Similarity=0.269 Sum_probs=222.7
Q ss_pred cCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCC
Q 008336 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (569)
Q Consensus 25 ~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (569)
.++.+.++..--+++ ++|.|||+||++|+++.|.+.++++.+...+ ++.+..|+++...
T Consensus 36 ~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~------------------- 96 (477)
T PTZ00102 36 VLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM------------------- 96 (477)
T ss_pred EcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH-------------------
Confidence 344443333223577 9999999999999999999999999887543 5888888877653
Q ss_pred chhHHHHHHhcCCCCccEEEEECCCCcEEEcCCcce-------eecc-cCCCCCc-cHHHHHHHHH--------------
Q 008336 103 SETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEI-------IREY-GVEGYPF-TVERIKEMKE-------------- 159 (569)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~-------~~~~-~~~~~~~-~~~~i~~~~~-------------- 159 (569)
.+++.|+|.++|++++++.++.+ ...|.+- +... +...... +..++..+.+
T Consensus 97 -----~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (477)
T PTZ00102 97 -----ELAQEFGVRGYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKD 170 (477)
T ss_pred -----HHHHhcCCCcccEEEEEECCceE-EecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCC
Confidence 58999999999999999654444 4444321 1111 1000000 1111111000
Q ss_pred ------HHHHHHhh-cc----------------------------------cccccccCCCceeecCCCceeeeccccCc
Q 008336 160 ------QEERAKRE-QS----------------------------------LRSVLTSHSRDFVISSDGRKISVSDLEGK 198 (569)
Q Consensus 160 ------~~~~~~~~-~~----------------------------------l~~~~~~~~~d~~~~~~~~~~~~~~~~gk 198 (569)
-...+... .. +..|+.....|.+...+.++...+...++
T Consensus 171 ~~~~~~f~~~a~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~ 250 (477)
T PTZ00102 171 SELYKKFEEVADKHREHAKFFVKKHEGKNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGK 250 (477)
T ss_pred cHHHHHHHHHHHhccccceEEEEcCCCCCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCc
Confidence 00000000 00 01111111112222222222222222334
Q ss_pred EEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHH-HHHhhcccCC
Q 008336 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELST 277 (569)
Q Consensus 199 ~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~-~l~~~f~v~~ 277 (569)
.++.++. .+.....+.+.+.+++++++++ +.|+.+|.+. .. .+.+.||+..
T Consensus 251 ~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~-----~~f~~vd~~~---------------------~~~~~~~~~gi~~ 302 (477)
T PTZ00102 251 DLVWFCG--TTEDYDKYKSVVRKVARKLREK-----YAFVWLDTEQ---------------------FGSHAKEHLLIEE 302 (477)
T ss_pred cEEEEec--CHHHHHHHHHHHHHHHHhccCc-----eEEEEEechh---------------------cchhHHHhcCccc
Confidence 4433332 2344556778888888888765 6677776654 23 3678999999
Q ss_pred CceEEEECCCCCchhhhhHHHHHhhCCCCCC-CChHHHHHHHHHHHHHHhhhhhhhhhccCCcccee-cCCCCceecc-c
Q 008336 278 LPTLVIIGPDGKTLHSNVAEAIEEHGVGAFP-FTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVV-GKNGGKVPVS-D 354 (569)
Q Consensus 278 ~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~~g~~v~l~-~ 354 (569)
+|++++....|++..... ..+ .+.+.+..|.....++...+++++...+...+-.+ ...|..+.-. .
T Consensus 303 ~P~~~i~~~~~~y~~~~~----------~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~ 372 (477)
T PTZ00102 303 FPGLAYQSPAGRYLLPPA----------KESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVF 372 (477)
T ss_pred CceEEEEcCCcccCCCcc----------ccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHh
Confidence 999999886665543211 011 47899999999999998888888877655433222 3334433321 1
Q ss_pred CCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 355 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 355 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
-.||+|+|+|||+||++|+.+.|.|+++++.+++. ..+.++.++.+.+. ..++.|+
T Consensus 373 ~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~v~~~~id~~~~~-----------------------~~~~~~~ 428 (477)
T PTZ00102 373 KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-DSIIVAKMNGTANE-----------------------TPLEEFS 428 (477)
T ss_pred cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CcEEEEEEECCCCc-----------------------cchhcCC
Confidence 23899999999999999999999999999988753 24666666665443 3578899
Q ss_pred CCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCccc
Q 008336 435 VSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENV 492 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~~~ 492 (569)
++++||++++++++++..+. .| ....+.+.+.|++.+....++.
T Consensus 429 v~~~Pt~~~~~~~~~~~~~~-------~G-------~~~~~~l~~~i~~~~~~~~~~~ 472 (477)
T PTZ00102 429 WSAFPTILFVKAGERTPIPY-------EG-------ERTVEGFKEFVNKHATNPFEDD 472 (477)
T ss_pred CcccCeEEEEECCCcceeEe-------cC-------cCCHHHHHHHHHHcCCCCcccc
Confidence 99999999998777653331 11 2234566777777665544333
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=229.27 Aligned_cols=347 Identities=19% Similarity=0.366 Sum_probs=200.2
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
+++ ++|.|||+||++|+++.|.+.++++.+...+ ++.++.|+++... .+++.|+
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~------------------------~l~~~~~ 72 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK------------------------DLAQKYG 72 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH------------------------HHHHhCC
Confidence 567 9999999999999999999999999987553 5888888888653 5899999
Q ss_pred CCCccEEEEECCCCcE--EEcCCcce-------eecc-cCCCCCc-cHHHHHHHHHHHH--------------------H
Q 008336 115 VMGIPHLVILDENGKV--LSDGGVEI-------IREY-GVEGYPF-TVERIKEMKEQEE--------------------R 163 (569)
Q Consensus 115 v~~~P~~~lid~~G~i--~~~~~~~~-------~~~~-~~~~~~~-~~~~i~~~~~~~~--------------------~ 163 (569)
|.++|+++++ ++|+. ....|..- +... +...... +.+++..++.... .
T Consensus 73 i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 151 (462)
T TIGR01130 73 VSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSV 151 (462)
T ss_pred CccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHH
Confidence 9999999999 45654 44444221 1111 1111111 2333443332210 0
Q ss_pred HHhhccccc-ccccCC-----------Cc-eeecCCCceeeeccccCc------EEEEEEecCCcccchhhhHHHHHHHH
Q 008336 164 AKREQSLRS-VLTSHS-----------RD-FVISSDGRKISVSDLEGK------TIGLYFSMSSYKASAEFTPRLVEVYE 224 (569)
Q Consensus 164 ~~~~~~l~~-~~~~~~-----------~d-~~~~~~~~~~~~~~~~gk------~v~l~f~~~~~~~c~~~~~~~~~~~~ 224 (569)
+........ +..... .. .++...........+.|. .+.-|+.....|.+..+++....
T Consensus 152 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~--- 228 (462)
T TIGR01130 152 AEKLRDVYFFFAHSSDVAAFAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAA--- 228 (462)
T ss_pred HHHhhhccceEEecCCHHHHhhcCCCCCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchh---
Confidence 000000000 000000 00 000000000000000110 11123444455566666554322
Q ss_pred HHhcCCCceEEEEeeccccH---H----HHHHHhcCCC--cccccCCch-hHHHHHhhcccC--CCceEEEECCCCCchh
Q 008336 225 KLKGKGESFEIVLISLDDEE---E----SFKRDLGSMP--WLALPFKDK-SREKLARYFELS--TLPTLVIIGPDGKTLH 292 (569)
Q Consensus 225 ~~~~~~~~~ei~~v~~d~~~---~----~~~~~~~~~~--~~~~~~~d~-~~~~l~~~f~v~--~~Ptlvi~~~~g~~~~ 292 (569)
.+...+ ++.++++..+.+. . .+++..+++. ++.+...|. ....+++.|++. .+|++++++.++...+
T Consensus 229 ~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~~vi~~~~~~~~y 307 (462)
T TIGR01130 229 KYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKY 307 (462)
T ss_pred hHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCceEEEEeCCccccc
Confidence 111222 3334444443322 1 2222222332 343443332 367889999998 6999999987752111
Q ss_pred hhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCcc-c--ee-cCCCCceecccCCCCEEEEEEecCC
Q 008336 293 SNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLD-F--VV-GKNGGKVPVSDLAGKTILLYFSAHW 368 (569)
Q Consensus 293 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-f--~~-~~~g~~v~l~~~~gk~vll~F~a~w 368 (569)
. .....++.+.+.++.....++...+..++...+...+ - .+ ..+.+.+.++ .++++||+||++|
T Consensus 308 ~----------~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~--~~~~vlv~f~a~w 375 (462)
T TIGR01130 308 P----------MDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLD--ETKDVLVEFYAPW 375 (462)
T ss_pred C----------CCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhcc--CCCeEEEEEECCC
Confidence 1 1111468999999999999999888888877665321 1 12 3333443333 3799999999999
Q ss_pred ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCC
Q 008336 369 CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 448 (569)
Q Consensus 369 C~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G 448 (569)
|++|+.+.|.+.++++.++.....+.++.++++.+. +.. ++++++|+++++.+++
T Consensus 376 C~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~------------------------~~~-~~i~~~Pt~~~~~~~~ 430 (462)
T TIGR01130 376 CGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND------------------------VPP-FEVEGFPTIKFVPAGK 430 (462)
T ss_pred CHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc------------------------cCC-CCccccCEEEEEeCCC
Confidence 999999999999999999862124777777776442 333 8999999999996555
Q ss_pred c
Q 008336 449 R 449 (569)
Q Consensus 449 ~ 449 (569)
+
T Consensus 431 ~ 431 (462)
T TIGR01130 431 K 431 (462)
T ss_pred C
Confidence 4
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-24 Score=186.08 Aligned_cols=130 Identities=54% Similarity=1.107 Sum_probs=119.6
Q ss_pred cceecCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCccc
Q 008336 340 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLAL 419 (569)
Q Consensus 340 ~f~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 419 (569)
+|+.+.+|+.+++++++||+|||+||++||++|++++|.|.+++++++++..+++|++|++|.+.+.+++++++++|+.+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 46778999999999999999999999999999999999999999999865447999999999999999999999999888
Q ss_pred ccCc-hhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCC
Q 008336 420 PFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPF 469 (569)
Q Consensus 420 ~~~~-d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~ 469 (569)
|+.. +....+++.|+|.++|+++|||++|+++.+.+++++..+|+.+|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 8765 5567899999999999999999999999999999999999999997
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=182.55 Aligned_cols=119 Identities=32% Similarity=0.649 Sum_probs=105.9
Q ss_pred CceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhc-----CCCeEEEEEeCCCChhHHHHHHhcCC--Ccccc
Q 008336 348 GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-----NESLEVVFISSDRDQTSFDEFFKGMP--WLALP 420 (569)
Q Consensus 348 ~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-----~~~~~vv~is~d~~~~~~~~~~~~~~--~~~~~ 420 (569)
..+++++++||+|+|+|||+||++|++++|.|.+++++++++ ..+++||+|+.|.+.+.+++|+++++ |+.+|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 345778999999999999999999999999999999988763 23699999999998888999999987 77788
Q ss_pred cCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCC
Q 008336 421 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEA 466 (569)
Q Consensus 421 ~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~ 466 (569)
+..+....+++.|++.++|+++|||++|+|+.++++..+..+|.++
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~ 141 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPAC 141 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHH
Confidence 8877677899999999999999999999999999999988887544
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-22 Score=175.83 Aligned_cols=128 Identities=52% Similarity=1.030 Sum_probs=112.3
Q ss_pred ceecCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC-CCccc
Q 008336 341 FVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM-PWLAL 419 (569)
Q Consensus 341 f~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~-~~~~~ 419 (569)
|++|.+ +++++++++||++||+||++||++|+.++|.|++++++++++..++.|++|++|.+.+.+++|++++ +|..+
T Consensus 2 ~~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~ 80 (132)
T cd02964 2 FLLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAV 80 (132)
T ss_pred ccccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEee
Confidence 445555 7999999999999999999999999999999999999998643469999999999988999999999 67777
Q ss_pred ccCc-hhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhh-cCCCCCCC
Q 008336 420 PFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAV-HGAEAYPF 469 (569)
Q Consensus 420 ~~~~-d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~-~g~~~~p~ 469 (569)
++.. .....+++.|+|.++|+++|||++|+|+.+++...+.. +|+.+|||
T Consensus 81 ~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 81 PFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred ccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 7765 34567888999999999999999999999998888655 99999997
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-22 Score=175.19 Aligned_cols=129 Identities=55% Similarity=1.134 Sum_probs=116.6
Q ss_pred CceecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCccc
Q 008336 21 DFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAV 98 (569)
Q Consensus 21 df~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 98 (569)
||+.+.+|+.+++++++|| +||+||++||++|+.++|.|.++++++++++ +++|++|++|.+.+.+.+++++++|..+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 5788899999999999999 9999999999999999999999999998653 5999999999999999999999988777
Q ss_pred ccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCc
Q 008336 99 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPF 149 (569)
Q Consensus 99 ~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 149 (569)
++.+.+....+.+.|++.++|+++|||++|+++.+.+..++..++...|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 776644556789999999999999999999999999988888888888875
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-22 Score=175.93 Aligned_cols=115 Identities=29% Similarity=0.598 Sum_probs=99.4
Q ss_pred ceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC------CEEEEEEeCCCCHHHHHHHHHhCC--Ccccc
Q 008336 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG------DFEVIFVSGDEDDEAFKGYFSKMP--WLAVP 99 (569)
Q Consensus 29 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g------~~~vv~v~~d~~~~~~~~~~~~~~--~~~~~ 99 (569)
+.+++++++|| ++|+|||+|||+|++++|.|.+++++++++. +++||+|+.|.+.+.+++|+++++ |..++
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 34577899999 9999999999999999999999999887531 599999999999888999999998 55566
Q ss_pred cCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcCCcceeecccC
Q 008336 100 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGV 144 (569)
Q Consensus 100 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~ 144 (569)
+.+.. ...+.+.|++.++|+++|||++|+|+.+++...|..+|.
T Consensus 96 ~~~~~-~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~ 139 (146)
T cd03008 96 FEDEF-RRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGP 139 (146)
T ss_pred ccchH-HHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHH
Confidence 65532 347899999999999999999999999999888877764
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-21 Score=166.14 Aligned_cols=126 Identities=47% Similarity=0.966 Sum_probs=106.1
Q ss_pred eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCC-CCEEEEEEeCCCCHHHHHHHHHhCC-Ccccc
Q 008336 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKMP-WLAVP 99 (569)
Q Consensus 23 ~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~-g~~~vv~v~~d~~~~~~~~~~~~~~-~~~~~ 99 (569)
+++.+ +++++++++|| ++|+|||+||++|+.++|.|++++++++++ .+++|++|++|.+.+.+++|+++++ |..++
T Consensus 3 ~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 3 LLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred cccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 33434 59999999999 999999999999999999999999999865 2599999999999999999999994 55666
Q ss_pred cCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcCCcceee-cccCCCCCc
Q 008336 100 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIR-EYGVEGYPF 149 (569)
Q Consensus 100 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~-~~~~~~~~~ 149 (569)
+.+......+.+.|++.++|+++|||++|+|+.+++.+.+. +++...|||
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 65534445788899999999999999999999998876554 477777775
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-20 Score=160.64 Aligned_cols=121 Identities=48% Similarity=0.912 Sum_probs=112.6
Q ss_pred cCCCCceecc-cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc--CCCcccc
Q 008336 344 GKNGGKVPVS-DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG--MPWLALP 420 (569)
Q Consensus 344 ~~~g~~v~l~-~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~--~~~~~~~ 420 (569)
+.+|..+..+ .++||+|.++|.|.|||||+.+.|.|.++|+++++++..++||+||.|++.+++.+|+.. ++|+.+|
T Consensus 19 ~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iP 98 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIP 98 (157)
T ss_pred ccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEec
Confidence 6777777666 789999999999999999999999999999999987778999999999999999999985 6799999
Q ss_pred cCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCC
Q 008336 421 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGA 464 (569)
Q Consensus 421 ~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~ 464 (569)
+.++..+++.+.|.|.++|++++++++|.++.++++.++..+|.
T Consensus 99 f~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 99 FGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred CCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 99999999999999999999999999999999999999988873
|
|
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.6e-20 Score=156.66 Aligned_cols=123 Identities=36% Similarity=0.643 Sum_probs=113.9
Q ss_pred eecCCCceeeec-cccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcC--CCccc
Q 008336 182 VISSDGRKISVS-DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS--MPWLA 258 (569)
Q Consensus 182 ~~~~~~~~~~~~-~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~--~~~~~ 258 (569)
+.+.++..+..+ .+.||.|++||++.|||+|++|||.+.++|+.++..+.+|||+|||.|.+.+++..++.. ++|++
T Consensus 17 l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~ 96 (157)
T KOG2501|consen 17 LRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLA 96 (157)
T ss_pred eeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEE
Confidence 456667677766 589999999999999999999999999999999999999999999999999999999984 89999
Q ss_pred ccCCchhHHHHHhhcccCCCceEEEECCCCCchhhhhHHHHHhhCC
Q 008336 259 LPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGV 304 (569)
Q Consensus 259 ~~~~d~~~~~l~~~f~v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~ 304 (569)
+||++...+++.+.|++.++|++++++++|..+..+....|+.+|.
T Consensus 97 iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 97 IPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred ecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 9999999999999999999999999999999999999999888874
|
|
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-19 Score=150.32 Aligned_cols=110 Identities=26% Similarity=0.489 Sum_probs=95.7
Q ss_pred cccee-cCCCCceecccCC-CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCC
Q 008336 339 LDFVV-GKNGGKVPVSDLA-GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 416 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~~~-gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 416 (569)
|+|.+ +.+|+.+++++++ ||+++|+||++||++|+.++|.|+++++++++ ++.++.++ |.+.+..++++++++.
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~-~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLAS-DGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEe-CCCHHHHHHHHHHhCC
Confidence 57777 8999999999997 99999999999999999999999999888754 38888775 6677889999999886
Q ss_pred cccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 417 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 417 ~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
..+|+..+ ..+.+.|+++++|++++||++|+|++++
T Consensus 77 ~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 77 EAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 56776653 4588999999999999999999999984
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-19 Score=144.40 Aligned_cols=93 Identities=45% Similarity=0.983 Sum_probs=84.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC--CCcccccCchhhHHHHHhcC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM--PWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~--~~~~~~~~~d~~~~l~~~~~ 434 (569)
||+++|+||++||++|++++|.|.++++++++ ..+++||+|++|.+.+.++++++++ +|..+++..+....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 79999999999999999999999999999994 3479999999999999999999988 89999999888889999999
Q ss_pred CCCccEEEEECCCCcE
Q 008336 435 VSGIPMLVAIGPSGRT 450 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i 450 (569)
|.++|+++|+|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999987
|
... |
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=155.54 Aligned_cols=115 Identities=32% Similarity=0.595 Sum_probs=100.7
Q ss_pred ccCccCCcee---cCCCceeecCCCCCc-EEEEEecC-CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 15 LSSSARDFLI---RSNGDQVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 15 ~g~~~pdf~~---~~~g~~v~l~~~~gk-vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
+|+++|+|.+ +.+|+.+++++++|| ++|+||++ |||+|+.++|.+.++++.+++++ +.+++|+.+.+.. +++|
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~-v~~v~v~~~~~~~-~~~~ 79 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG-VDVVGVSSDDDPP-VREF 79 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT-CEEEEEEESSSHH-HHHH
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc-eEEEEecccCCHH-HHHH
Confidence 6999999943 489999999999999 99999999 99999999999999999998875 9999999998877 9999
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCCC---------CccEEEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKVM---------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~ 133 (569)
+++.+..+..+.|.. ..+.+.|++. ++|++++||++|+|++.
T Consensus 80 ~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~ 130 (146)
T PF08534_consen 80 LKKYGINFPVLSDPD--GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYR 130 (146)
T ss_dssp HHHTTTTSEEEEETT--SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEE
T ss_pred HHhhCCCceEEechH--HHHHHHhCCccccccccCCeecEEEEEECCCEEEEE
Confidence 999877766666643 4799999998 99999999999999985
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=155.30 Aligned_cols=115 Identities=33% Similarity=0.626 Sum_probs=102.9
Q ss_pred Ccccee-c--CCCCceecccCCCCEEEEEEecC-CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 338 DLDFVV-G--KNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 338 ~~~f~~-~--~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
.|+|.+ + .+|+++++++++||+++|+||++ |||+|+.++|.|.+++++++++ ++.+++|+.+.+.. ..+++++
T Consensus 6 ~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~--~v~~v~v~~~~~~~-~~~~~~~ 82 (146)
T PF08534_consen 6 APDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK--GVDVVGVSSDDDPP-VREFLKK 82 (146)
T ss_dssp --CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TCEEEEEEESSSHH-HHHHHHH
T ss_pred CCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC--ceEEEEecccCCHH-HHHHHHh
Confidence 478875 4 99999999999999999999999 9999999999999999998876 79999999998866 8888888
Q ss_pred CCCcccccCchhhHHHHHhcCCC---------CccEEEEECCCCcEEEccch
Q 008336 414 MPWLALPFGDARKASLSRKFKVS---------GIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 414 ~~~~~~~~~~d~~~~l~~~~~v~---------~~Pt~~lid~~G~i~~~~~~ 456 (569)
++ ..+|+..|....+.+.|++. ++|+++|||++|+|++++.+
T Consensus 83 ~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 83 YG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp TT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred hC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeC
Confidence 65 78888889889999999998 99999999999999999643
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.1e-19 Score=152.72 Aligned_cols=108 Identities=24% Similarity=0.331 Sum_probs=97.3
Q ss_pred CCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-----CChhHHHHHHhcCCCcccc
Q 008336 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-----RDQTSFDEFFKGMPWLALP 420 (569)
Q Consensus 346 ~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-----~~~~~~~~~~~~~~~~~~~ 420 (569)
.|+++++++++||++||+||++||++|++++|.|++++++++++ ++.|++|+.+ .+.+.+++|+++++ +.+|
T Consensus 12 ~~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p 88 (126)
T cd03012 12 TDKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYG-ITYP 88 (126)
T ss_pred CCCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcC-CCCC
Confidence 35789999999999999999999999999999999999999865 7999999863 46778899999888 6789
Q ss_pred cCchhhHHHHHhcCCCCccEEEEECCCCcEEEccch
Q 008336 421 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 421 ~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~ 456 (569)
++.|....+.+.|++.++|+++|||++|+|++++.+
T Consensus 89 ~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 89 VANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred EEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEec
Confidence 999999999999999999999999999999998643
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-18 Score=143.94 Aligned_cols=109 Identities=24% Similarity=0.505 Sum_probs=91.7
Q ss_pred CCc-eecCCCceeecCCCC-Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCc
Q 008336 20 RDF-LIRSNGDQVKLDSLK-GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL 96 (569)
Q Consensus 20 pdf-~~~~~g~~v~l~~~~-gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~ 96 (569)
|+| +.+.+|+.+++++++ || ++|+||++||++|+.++|.+.++++++.. ++.++.++ +.+.+.++++++++++.
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~-~~~~~~~~~~~~~~~~~ 77 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLAS-DGEKAEHQRFLKKHGLE 77 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEEe-CCCHHHHHHHHHHhCCC
Confidence 688 556899999999997 99 99999999999999999999999888753 47788775 66788999999999875
Q ss_pred ccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcC
Q 008336 97 AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134 (569)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 134 (569)
..+.... ..+.+.|++.++|++++||++|+|++++
T Consensus 78 ~~p~~~~---~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 78 AFPYVLS---AELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCcEEec---HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 4443322 2478899999999999999999998753
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=171.93 Aligned_cols=300 Identities=20% Similarity=0.266 Sum_probs=178.0
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|.||+|||++|+++.|.+.++++.++. .+.+..|+++.. ..+++.|+|+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~--~~~~~~vd~~~~------------------------~~~~~~y~i~ 100 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG--KVKIGAVDCDEH------------------------KDLCEKYGIQ 100 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcC--ceEEEEeCchhh------------------------HHHHHhcCCc
Confidence 45 99999999999999999999999999975 366666666654 3699999999
Q ss_pred CccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCceeeec-cc
Q 008336 117 GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVS-DL 195 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~-~~ 195 (569)
++||+.++.++.+++...+ +.+.+.+.++....-. ..+..... .-++......+... ..
T Consensus 101 gfPtl~~f~~~~~~~~~~~------------~~~~~~~~~~~~~~~~----~~~~~~~~----~~v~~l~~~~~~~~~~~ 160 (383)
T KOG0191|consen 101 GFPTLKVFRPGKKPIDYSG------------PRNAESLAEFLIKELE----PSVKKLVE----GEVFELTKDNFDETVKD 160 (383)
T ss_pred cCcEEEEEcCCCceeeccC------------cccHHHHHHHHHHhhc----cccccccC----CceEEccccchhhhhhc
Confidence 9999999965534444332 2233444433322111 11111100 00222222222211 11
Q ss_pred cCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhccc
Q 008336 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (569)
Q Consensus 196 ~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v 275 (569)
....+++.|++|||++|+.+.|.+.+++..++. +..+++..+ |.+. ...+++.++|
T Consensus 161 ~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~--d~~~---------------------~~~~~~~~~v 216 (383)
T KOG0191|consen 161 SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKI--DATV---------------------HKSLASRLEV 216 (383)
T ss_pred cCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEee--ccch---------------------HHHHhhhhcc
Confidence 335688889999999999999999999998875 344444444 4332 5678899999
Q ss_pred CCCceEEEECCCCC-chhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHH-hhhhhhhhhccCCcc-cee-cCCCCcee
Q 008336 276 STLPTLVIIGPDGK-TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKE-ESQTLESVLVSGDLD-FVV-GKNGGKVP 351 (569)
Q Consensus 276 ~~~Ptlvi~~~~g~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~-f~~-~~~g~~v~ 351 (569)
..+|+++++.++.+ ...... -.+.+.+..+........ ..+.+.+... ++ +.. -.+.....
T Consensus 217 ~~~Pt~~~f~~~~~~~~~~~~------------~R~~~~i~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~ 281 (383)
T KOG0191|consen 217 RGYPTLKLFPPGEEDIYYYSG------------LRDSDSIVSFVEKKERRNIPEPELKEIED---KDTFSPTFLDTAEFL 281 (383)
T ss_pred cCCceEEEecCCCcccccccc------------cccHHHHHHHHHhhcCCCCCCcccccccC---ccccccchhhhhhhh
Confidence 99999999987766 211111 234566666665443321 0111111111 11 111 00111111
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 352 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 352 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
.....-+..++.|+++||++|....|.+...+...... ...+-...++...- ..++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~k~~~~~~---------------------~~~~~ 338 (383)
T KOG0191|consen 282 DSLEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPD--LSKIKAAKLDCALL---------------------KSLCQ 338 (383)
T ss_pred hhhHHhhhhHhhhhcchhhcccccchhHHHHHhccccc--cccceeeccccccc---------------------cchhh
Confidence 11111246889999999999999999998887771101 12222222232210 11677
Q ss_pred hcCCCCccEEEEEC
Q 008336 432 KFKVSGIPMLVAIG 445 (569)
Q Consensus 432 ~~~v~~~Pt~~lid 445 (569)
...++++|++.+..
T Consensus 339 ~~~~~~~~~~~~~~ 352 (383)
T KOG0191|consen 339 KAIVRGYPTIKLYN 352 (383)
T ss_pred HhhhhcCceeEeec
Confidence 77888999988873
|
|
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-18 Score=148.19 Aligned_cols=114 Identities=21% Similarity=0.287 Sum_probs=98.8
Q ss_pred Ccccee-cCCC--CceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 338 DLDFVV-GKNG--GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 338 ~~~f~~-~~~g--~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
.|+|.+ +.+| ..+++++++||+++|+||++||++|++++|.|+++.+++ ++.|++|+.+.+.+.+++|++++
T Consensus 3 ~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~~~~~~~~~~ 77 (127)
T cd03010 3 APAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPENALAWLARH 77 (127)
T ss_pred CCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHHHHHHHHHhc
Confidence 478887 7777 889999999999999999999999999999999987664 38999999988889999999887
Q ss_pred CCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccch
Q 008336 415 PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 415 ~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~ 456 (569)
.....++..|....+++.|++.++|++++||++|+++.+..+
T Consensus 78 ~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G 119 (127)
T cd03010 78 GNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVG 119 (127)
T ss_pred CCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEec
Confidence 743334556777889999999999999999999999988543
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.8e-18 Score=146.65 Aligned_cols=114 Identities=33% Similarity=0.612 Sum_probs=102.0
Q ss_pred ccCccCCc-eecCCCceeecCCCCCc-EEEEEecC-CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHH
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~ 91 (569)
+|+++|+| +.+.+|+.+++++++|| ++|.||++ ||++|+..++.|+++++++++.+ +.+++|+.| +.+..+++.+
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~-~~vi~is~d-~~~~~~~~~~ 78 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG-VQVIGISTD-DPEEIKQFLE 78 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT-EEEEEEESS-SHHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce-EEeeecccc-cccchhhhhh
Confidence 69999999 55689999999999999 99999999 99999999999999999999875 999999997 5668899999
Q ss_pred hCCCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEE
Q 008336 92 KMPWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLS 132 (569)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~ 132 (569)
.+++.+..+.|.. ..+.+.|++. .+|+++|||++|+|++
T Consensus 79 ~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 79 EYGLPFPVLSDPD--GELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp HHTCSSEEEEETT--SHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred hhccccccccCcc--hHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 8887766666644 3689999998 9999999999999986
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-18 Score=160.18 Aligned_cols=134 Identities=16% Similarity=0.268 Sum_probs=102.8
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSF 407 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~~ 407 (569)
...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ ++.||+|++| .+.++.
T Consensus 77 ~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~--Gv~VIgV~~d~~~~~e~~s~~ei 154 (236)
T PLN02399 77 KSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEI 154 (236)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC--CcEEEEEecccccccCCCCHHHH
Confidence 44689988 9999999999999999999999999999999999999999999876 7999999975 345678
Q ss_pred HHHH-hcCCCcccccCc--hhhH-HHHHhcC-------------CCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCC
Q 008336 408 DEFF-KGMPWLALPFGD--ARKA-SLSRKFK-------------VSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFT 470 (569)
Q Consensus 408 ~~~~-~~~~~~~~~~~~--d~~~-~l~~~~~-------------v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~ 470 (569)
++|+ ++++ +.||++. |.++ .+...|+ ++..|++||||++|+|+.+..+. ..
T Consensus 155 ~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~-----------~~ 222 (236)
T PLN02399 155 KQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPT-----------TS 222 (236)
T ss_pred HHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCC-----------CC
Confidence 8887 4555 6777763 2222 2322222 45679999999999999986432 22
Q ss_pred HHHHHHHHHHhhhhhc
Q 008336 471 EERMKEIDGQYNEMAK 486 (569)
Q Consensus 471 ~~~~~~l~~~l~~l~~ 486 (569)
. ++|++.|+++++
T Consensus 223 ~---~~le~~I~~lL~ 235 (236)
T PLN02399 223 P---FQIEKDIQKLLA 235 (236)
T ss_pred H---HHHHHHHHHHhc
Confidence 2 356666776664
|
|
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=173.78 Aligned_cols=116 Identities=20% Similarity=0.332 Sum_probs=102.2
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-----CChhHHHHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-----RDQTSFDEF 410 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-----~~~~~~~~~ 410 (569)
..|+|.+ +.+|+.++++ +||+|||+|||+||++|++++|.|++++++++.+ ++.||+|+++ .+...++++
T Consensus 37 ~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~~~~~~ 112 (521)
T PRK14018 37 TLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKW 112 (521)
T ss_pred CCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHHHHHHH
Confidence 4689987 9999999998 6999999999999999999999999999998744 5899999873 345677888
Q ss_pred HhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccch
Q 008336 411 FKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 411 ~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~ 456 (569)
++.+++..+|+..|....+++.|+|+++|+++|||++|+|+.+..+
T Consensus 113 ~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G 158 (521)
T PRK14018 113 YAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKG 158 (521)
T ss_pred HHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeC
Confidence 8888877889998999999999999999999999999999998543
|
|
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=154.90 Aligned_cols=114 Identities=21% Similarity=0.335 Sum_probs=94.5
Q ss_pred ccccCccCCce-ecCC--CceeecCCC-CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 13 SLLSSSARDFL-IRSN--GDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 13 ~~~g~~~pdf~-~~~~--g~~v~l~~~-~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
..+|.++|+|. .+.+ |+.++++.+ +|| ++|+|||+||++|++++|.|.++++ + ++.|++|+.+++.+.++
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~-~~~vi~v~~~~~~~~~~ 113 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q-GIRVVGMNYKDDRQKAI 113 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c-CCEEEEEECCCCHHHHH
Confidence 46799999994 4566 577777665 799 9999999999999999999988864 3 38999999988888999
Q ss_pred HHHHhCCCcccc-cCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 88 GYFSKMPWLAVP-FSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+|+++++..+.. +.|.. ..+...|++.++|++++||++|+|++.
T Consensus 114 ~~~~~~~~~~~~~~~D~~--~~~~~~~gv~~~P~t~vid~~G~i~~~ 158 (185)
T PRK15412 114 SWLKELGNPYALSLFDGD--GMLGLDLGVYGAPETFLIDGNGIIRYR 158 (185)
T ss_pred HHHHHcCCCCceEEEcCC--ccHHHhcCCCcCCeEEEECCCceEEEE
Confidence 999998876654 33433 357789999999999999999999875
|
|
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=154.70 Aligned_cols=114 Identities=23% Similarity=0.255 Sum_probs=95.1
Q ss_pred cCCcccee-cCC--CCceecccC-CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 336 SGDLDFVV-GKN--GGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 336 ~~~~~f~~-~~~--g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
...|+|.+ +.+ |+.++++.+ +||+++|+||++||++|++++|.|.++++ + +++|++|+.|.+++..++|+
T Consensus 43 ~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~--~~~vi~v~~~~~~~~~~~~~ 116 (185)
T PRK15412 43 KPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q--GIRVVGMNYKDDRQKAISWL 116 (185)
T ss_pred CCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c--CCEEEEEECCCCHHHHHHHH
Confidence 34588887 666 467776665 79999999999999999999999987753 2 58999999988888889999
Q ss_pred hcCCCcccc-cCchhhHHHHHhcCCCCccEEEEECCCCcEEEccch
Q 008336 412 KGMPWLALP-FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 412 ~~~~~~~~~-~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~ 456 (569)
++++ +.+| +..|....+.+.|++.++|++|+||++|+|++++.+
T Consensus 117 ~~~~-~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G 161 (185)
T PRK15412 117 KELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAG 161 (185)
T ss_pred HHcC-CCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEec
Confidence 9887 4555 356777888999999999999999999999998654
|
|
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.9e-18 Score=157.07 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=93.9
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSF 407 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~~ 407 (569)
...|+|.+ +.+|+.+++++++||+|||+|||+||++|++++|.|++++++++++ ++.||+|+++ .+.+.+
T Consensus 17 ~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~--g~~vvgv~~~~~~~~e~d~~e~~ 94 (199)
T PTZ00056 17 KSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL--GLEILAFPTSQFLNQEFPNTKDI 94 (199)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC--ceEEEEecchhccCCCCCCHHHH
Confidence 45689988 9999999999999999999999999999999999999999999876 7999999974 356789
Q ss_pred HHHHhcCCCcccccCch------hhHH--------HHHhcCCC----Cc---cEEEEECCCCcEEEccc
Q 008336 408 DEFFKGMPWLALPFGDA------RKAS--------LSRKFKVS----GI---PMLVAIGPSGRTITKEA 455 (569)
Q Consensus 408 ~~~~~~~~~~~~~~~~d------~~~~--------l~~~~~v~----~~---Pt~~lid~~G~i~~~~~ 455 (569)
++|+++++ +.||++.+ .... +...|++. ++ |++||||++|+|+.+..
T Consensus 95 ~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 95 RKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred HHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 99998877 67776532 1111 22334432 23 37999999999998854
|
|
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=151.71 Aligned_cols=143 Identities=17% Similarity=0.315 Sum_probs=119.1
Q ss_pred Ccccee-cCCCCceecccC-CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHHH
Q 008336 338 DLDFVV-GKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFD 408 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~~ 408 (569)
.|+|.+ +.+|+.++++++ +||++||+||++||+.|..+++.|.+++++++++ ++.|++|++|. +++.++
T Consensus 4 ~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~--~v~~v~is~d~~~~~~~d~~~~~~ 81 (171)
T cd02969 4 APDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK--GVAVVAINSNDIEAYPEDSPENMK 81 (171)
T ss_pred CCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC--CeEEEEEecCccccccccCHHHHH
Confidence 478877 889999999998 8999999999999999999999999999999864 69999999985 578899
Q ss_pred HHHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCC-CCHHHHHHHHHHhhhhhcC
Q 008336 409 EFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYP-FTEERMKEIDGQYNEMAKG 487 (569)
Q Consensus 409 ~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p-~~~~~~~~l~~~l~~l~~~ 487 (569)
++++.++ +.+|++.|....+++.|++..+|+++|||++|+|+++.... ..... .......+|.++|+.++.+
T Consensus 82 ~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 82 AKAKEHG-YPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRID------DSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HHHHHCC-CCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeeccc------CCcccccccccHHHHHHHHHHHHcC
Confidence 9999887 45888889889999999999999999999999999874321 11011 1334557788888888877
Q ss_pred CC
Q 008336 488 WP 489 (569)
Q Consensus 488 ~~ 489 (569)
.+
T Consensus 155 ~~ 156 (171)
T cd02969 155 KP 156 (171)
T ss_pred CC
Confidence 65
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-17 Score=151.74 Aligned_cols=117 Identities=24% Similarity=0.526 Sum_probs=106.4
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
...|+|.+ +.+|+.+++++++||+++|+||++||++|+...+.|.+++++++++ ++.+++|++|.+.+.+.++++++
T Consensus 39 ~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~ 116 (173)
T PRK03147 39 KEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNRY 116 (173)
T ss_pred CCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHHh
Confidence 34578988 8999999999999999999999999999999999999999999865 69999999999989999999888
Q ss_pred CCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccc
Q 008336 415 PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 415 ~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
+ +.+|+..|....+.+.|++.++|++++||++|+++....
T Consensus 117 ~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~ 156 (173)
T PRK03147 117 G-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVIT 156 (173)
T ss_pred C-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEe
Confidence 7 678888888889999999999999999999999998743
|
|
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-18 Score=153.46 Aligned_cols=116 Identities=18% Similarity=0.275 Sum_probs=93.2
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFD 408 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~~ 408 (569)
..|+|.+ +.+|+.+++++++||++||+||++||++|++++|.|++++++|+++ ++.|++|++|. +.+...
T Consensus 8 ~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~--g~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 8 SIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ--GFEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred CCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC--CcEEEEecccccccCCCCCHHHHH
Confidence 4589988 8999999999999999999999999999999999999999999976 79999999862 334555
Q ss_pred HH-HhcCCCcccccCch--hh-HHHHHhcC-------------CCCccEEEEECCCCcEEEccc
Q 008336 409 EF-FKGMPWLALPFGDA--RK-ASLSRKFK-------------VSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 409 ~~-~~~~~~~~~~~~~d--~~-~~l~~~~~-------------v~~~Pt~~lid~~G~i~~~~~ 455 (569)
++ .++++ +.||++.+ .. ...++.|+ +.+.|++||||++|+|+.+..
T Consensus 86 ~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~ 148 (167)
T PLN02412 86 QTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYA 148 (167)
T ss_pred HHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEEC
Confidence 55 46655 77887642 22 13333332 667899999999999999854
|
|
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=154.10 Aligned_cols=120 Identities=19% Similarity=0.257 Sum_probs=94.7
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDE 84 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~ 84 (569)
-.|..+|+| +.+.+|+.+++++++|| +||+|||+||++|++++|.|++++++++++| ++|++|+++ ++.+
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g-~~vvgv~~~~~~~~e~d~~e 92 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG-LEILAFPTSQFLNQEFPNTK 92 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc-eEEEEecchhccCCCCCCHH
Confidence 457899999 55789999999999999 9999999999999999999999999999886 999999974 4678
Q ss_pred HHHHHHHhCCCcccccCC----chhHHH--------HHHhcCCC----Cc---cEEEEECCCCcEEEcC
Q 008336 85 AFKGYFSKMPWLAVPFSD----SETRDK--------LDELFKVM----GI---PHLVILDENGKVLSDG 134 (569)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~----~~~~~~--------l~~~~~v~----~~---P~~~lid~~G~i~~~~ 134 (569)
.+++|+++++..+..+.+ ...... +...|++. ++ |++||||++|+|+.+.
T Consensus 93 ~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~ 161 (199)
T PTZ00056 93 DIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF 161 (199)
T ss_pred HHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence 899999998876655432 111111 22234332 22 4799999999999753
|
|
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=145.27 Aligned_cols=111 Identities=21% Similarity=0.343 Sum_probs=95.2
Q ss_pred CccCCce-ecCCC--ceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHh
Q 008336 17 SSARDFL-IRSNG--DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92 (569)
Q Consensus 17 ~~~pdf~-~~~~g--~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~ 92 (569)
.++|+|. .+.+| +.+++++++|| ++|+||++||++|+.++|.|.++.+++ ++.|++|+.+++.+.+++|+++
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHh
Confidence 3689995 45777 88999999999 999999999999999999999998774 3899999999999999999999
Q ss_pred CCCccccc-CCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 93 MPWLAVPF-SDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 93 ~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
++..+.++ .|. ...+++.|++.++|+++++|++|+++..
T Consensus 77 ~~~~~~~~~~D~--~~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 77 HGNPYAAVGFDP--DGRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred cCCCCceEEECC--cchHHHhcCCCCCCeEEEECCCceEEEE
Confidence 88765543 333 2468899999999999999999999864
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=135.80 Aligned_cols=92 Identities=46% Similarity=0.927 Sum_probs=78.8
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhC--CCcccccCCchhHHHHHHhcC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM--PWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~ 114 (569)
|| ++|+|||+||++|++++|.|.++++++++..++++|+|+.|.+.+.++++++++ +|..+++.+.. ...+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-NSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-HHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-HHHHHHHCC
Confidence 78 999999999999999999999999999954479999999999999999999999 45555555444 468999999
Q ss_pred CCCccEEEEECCCCcE
Q 008336 115 VMGIPHLVILDENGKV 130 (569)
Q Consensus 115 v~~~P~~~lid~~G~i 130 (569)
+.++|+++|+|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999986
|
... |
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=156.89 Aligned_cols=120 Identities=22% Similarity=0.339 Sum_probs=94.7
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDD 83 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~ 83 (569)
...|.++|+| +.+.+|+.+++++++|| +||+|||+||++|+.++|.|++++++++++| +.|++|+++ ++.
T Consensus 73 ~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G-v~VIgV~~d~~~~~e~~s~ 151 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG-FEILAFPCNQFGGQEPGSN 151 (236)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC-cEEEEEecccccccCCCCH
Confidence 3578999999 55789999999999999 9999999999999999999999999999886 999999975 356
Q ss_pred HHHHHHH-HhCCCcccccCCchhH-HHHHHhc-------C------CCCccEEEEECCCCcEEEc
Q 008336 84 EAFKGYF-SKMPWLAVPFSDSETR-DKLDELF-------K------VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~-------~------v~~~P~~~lid~~G~i~~~ 133 (569)
+.+++|+ ++++..+..+.+.+.. ..+...| + +.+.|++||||++|+|+.+
T Consensus 152 ~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~ 216 (236)
T PLN02399 152 PEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVER 216 (236)
T ss_pred HHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEE
Confidence 7888987 5666655544322211 1122222 2 4567999999999999975
|
|
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.73 E-value=7e-18 Score=151.39 Aligned_cols=114 Identities=22% Similarity=0.325 Sum_probs=93.4
Q ss_pred cccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHHHHH
Q 008336 339 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDEF 410 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~~~~ 410 (569)
|+|.+ +.+|+.+++++++||+|||+|||+||+ |++++|.|++++++++++ ++.|++|++|. +.+.+++|
T Consensus 3 ~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 3 YDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred ceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEeccCccccCCCCCHHHHHHH
Confidence 67877 899999999999999999999999999 999999999999999865 69999999753 35678999
Q ss_pred Hhc-CCCcccccCchh--hHH-HHHhcC--CCCcc-----------EEEEECCCCcEEEccch
Q 008336 411 FKG-MPWLALPFGDAR--KAS-LSRKFK--VSGIP-----------MLVAIGPSGRTITKEAR 456 (569)
Q Consensus 411 ~~~-~~~~~~~~~~d~--~~~-l~~~~~--v~~~P-----------t~~lid~~G~i~~~~~~ 456 (569)
+++ ++ +.||++.|. ... ..+.|+ +.++| ++||||++|+|+.+..+
T Consensus 80 ~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G 141 (152)
T cd00340 80 CETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAP 141 (152)
T ss_pred HHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECC
Confidence 986 55 678887542 222 344455 45666 89999999999998654
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=143.57 Aligned_cols=113 Identities=32% Similarity=0.653 Sum_probs=103.6
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecC-CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
..|+|.+ +.+|+.+++++++||+++|.||++ ||++|+..++.|++++++++++ ++.+++|+.|.. +..+++.+.+
T Consensus 4 ~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~--~~~vi~is~d~~-~~~~~~~~~~ 80 (124)
T PF00578_consen 4 KAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK--GVQVIGISTDDP-EEIKQFLEEY 80 (124)
T ss_dssp BGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSSH-HHHHHHHHHH
T ss_pred CCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccc--eEEeeecccccc-cchhhhhhhh
Confidence 4589988 899999999999999999999998 9999999999999999999976 799999999744 6788888887
Q ss_pred CCcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 415 PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 415 ~~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~ 453 (569)
+ +.+|+..|....+++.|++. .+|++||||++|+|+++
T Consensus 81 ~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 81 G-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp T-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred c-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 7 88999999999999999999 99999999999999974
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.8e-18 Score=150.75 Aligned_cols=113 Identities=22% Similarity=0.344 Sum_probs=89.5
Q ss_pred cCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHHHH
Q 008336 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGY 89 (569)
Q Consensus 19 ~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~~~~~~ 89 (569)
+|+| +.+.+|+.+++++++|| |+|+|||+||+ |+.++|.|+++++++++.+ +.|++|+++ ++.+.+++|
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG-LVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC-EEEEEeccCccccCCCCCHHHHHHH
Confidence 6899 56789999999999999 99999999999 9999999999999998775 999999875 346789999
Q ss_pred HHh-CCCcccccCCchhHH-HHHHhcC--CCCcc-----------EEEEECCCCcEEEc
Q 008336 90 FSK-MPWLAVPFSDSETRD-KLDELFK--VMGIP-----------HLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~-~~~~~~~~~~~~~~~-~l~~~~~--v~~~P-----------~~~lid~~G~i~~~ 133 (569)
+++ ++..++.+.+.+... .....|+ +.++| +++|||++|+|+.+
T Consensus 80 ~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~ 138 (152)
T cd00340 80 CETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKR 138 (152)
T ss_pred HHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEE
Confidence 987 676655554321111 1233444 34555 89999999999985
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=143.54 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=92.1
Q ss_pred CCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-----CCHHHHHHHHHhCCCccccc
Q 008336 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-----EDDEAFKGYFSKMPWLAVPF 100 (569)
Q Consensus 27 ~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-----~~~~~~~~~~~~~~~~~~~~ 100 (569)
.|+++++++++|| ++|+||++||++|++++|.|+++++++++.+ +.+++|+.+ .+.+.+++|++++++.+..+
T Consensus 12 ~~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~-~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 12 TDKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG-LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC-eEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 3578999999999 9999999999999999999999999999764 999999863 46788999999998876666
Q ss_pred CCchhHHHHHHhcCCCCccEEEEECCCCcEEEcC
Q 008336 101 SDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134 (569)
Q Consensus 101 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 134 (569)
.|.. ..+.+.|++.++|++++||++|+|++..
T Consensus 91 ~D~~--~~~~~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 91 NDND--YATWRAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred ECCc--hHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence 5544 4688999999999999999999998753
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=147.40 Aligned_cols=117 Identities=28% Similarity=0.543 Sum_probs=104.3
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~ 91 (569)
.+|..+|+| +.+.+|+.+++++++|| ++|+||++||++|+...+.|.++++++.+.+ +.+++|++|.+.+.++.|++
T Consensus 36 ~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~-~~vi~i~~d~~~~~~~~~~~ 114 (173)
T PRK03147 36 QVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG-VEIIAVNVDETELAVKNFVN 114 (173)
T ss_pred CCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC-eEEEEEEcCCCHHHHHHHHH
Confidence 468999999 45689999999999999 9999999999999999999999999998764 99999999999999999999
Q ss_pred hCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 92 KMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+++..+..+.+.. ..+.+.|++.++|+++++|++|+++..
T Consensus 115 ~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 115 RYGLTFPVAIDKG--RQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HhCCCceEEECCc--chHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 9987666555443 478899999999999999999999863
|
|
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-17 Score=149.10 Aligned_cols=114 Identities=23% Similarity=0.322 Sum_probs=94.7
Q ss_pred cCCcccee-cCCCC--ceecccC-CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 336 SGDLDFVV-GKNGG--KVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 336 ~~~~~f~~-~~~g~--~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
...|+|.+ +.+|+ .++++++ +||+++|+||++||++|++++|.+++++++ ++.|++|+.+...+...+|+
T Consensus 38 ~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~~~~ 111 (173)
T TIGR00385 38 KPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNALKFL 111 (173)
T ss_pred CCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHHHHH
Confidence 44689987 78886 5555665 689999999999999999999999876542 48999999987777788899
Q ss_pred hcCCCcccc-cCchhhHHHHHhcCCCCccEEEEECCCCcEEEccch
Q 008336 412 KGMPWLALP-FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 412 ~~~~~~~~~-~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~ 456 (569)
++++ +.+| +..|....+.+.|++.++|++++||++|++++++.+
T Consensus 112 ~~~~-~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G 156 (173)
T TIGR00385 112 KELG-NPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAG 156 (173)
T ss_pred HHcC-CCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEec
Confidence 8887 4565 456778889999999999999999999999998543
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-17 Score=149.27 Aligned_cols=115 Identities=22% Similarity=0.310 Sum_probs=89.3
Q ss_pred CccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHH
Q 008336 17 SSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFK 87 (569)
Q Consensus 17 ~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~~~~ 87 (569)
..+|+| +.+.+|+.+++++++|| +||+|||+||++|++++|.|++++++|+++| +.|++|+++ ++.+...
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g-~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG-FEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC-cEEEEecccccccCCCCCHHHHH
Confidence 678999 45789999999999999 9999999999999999999999999999886 999999985 2444554
Q ss_pred HH-HHhCCCcccccCC--chhHHHHHHhc-----------C--CCCccEEEEECCCCcEEEc
Q 008336 88 GY-FSKMPWLAVPFSD--SETRDKLDELF-----------K--VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~-~~~~~~~~~~~~~--~~~~~~l~~~~-----------~--v~~~P~~~lid~~G~i~~~ 133 (569)
++ .++++..+..+.+ ... ......| + +.+.|++||||++|+|+..
T Consensus 86 ~~~~~~~~~~fpvl~~~d~~g-~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~ 146 (167)
T PLN02412 86 QTVCTRFKAEFPIFDKVDVNG-KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQR 146 (167)
T ss_pred HHHHHccCCCCceEeEEeeCC-CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEE
Confidence 54 5776765554432 111 1122222 2 6678999999999999975
|
|
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.5e-17 Score=146.39 Aligned_cols=116 Identities=25% Similarity=0.277 Sum_probs=98.3
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCC-CHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASW-CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~w-C~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|+++|+| +.+.+|+.+++++++|| ++|+||++| |++|.+++|.|+++++++. +++|++|+.|. ....++|+
T Consensus 19 ~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~-~~~~~~f~ 94 (167)
T PRK00522 19 QVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADL-PFAQKRFC 94 (167)
T ss_pred CCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCC-HHHHHHHH
Confidence 469999999 55689999999999999 999999999 9999999999999999983 49999999984 56789999
Q ss_pred HhCCCcccc-cCCchhHHHHHHhcCCCCcc---------EEEEECCCCcEEEcC
Q 008336 91 SKMPWLAVP-FSDSETRDKLDELFKVMGIP---------HLVILDENGKVLSDG 134 (569)
Q Consensus 91 ~~~~~~~~~-~~~~~~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~~ 134 (569)
++++...++ +.|.. ...+++.||+...| +++|||++|+|++..
T Consensus 95 ~~~~~~~~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~ 147 (167)
T PRK00522 95 GAEGLENVITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSE 147 (167)
T ss_pred HhCCCCCceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEE
Confidence 998876444 44422 23688999998877 999999999998753
|
|
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=147.92 Aligned_cols=112 Identities=21% Similarity=0.393 Sum_probs=94.1
Q ss_pred cccCccCCc-eecCCCceeecC--CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLD--SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~--~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
.+|+++|+| +.+.+|+.++++ +++|| ++|+||++|||+|++++|.+.+++++. ++.+++|+. ++.+..++|
T Consensus 47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~----~~~vv~Is~-~~~~~~~~~ 121 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE----ETDVVMISD-GTPAEHRRF 121 (189)
T ss_pred CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc----CCcEEEEeC-CCHHHHHHH
Confidence 579999999 456899999995 57999 999999999999999999999988653 266888884 467889999
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+++++.....+.. ...+.+.|++.++|+.++||++|+|+..
T Consensus 122 ~~~~~~~~~~~~~---~~~i~~~y~v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 122 LKDHELGGERYVV---SAEIGMAFQVGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred HHhcCCCcceeec---hhHHHHhccCCccceEEEECCCCeEEEc
Confidence 9999876544432 2468899999999999999999999874
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.4e-17 Score=146.42 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=100.4
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCC-ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+|.+ +.+|+.+++++++||+++|+||++| |++|.+++|.|+++++++. ++.|++||.|. +...++|.++
T Consensus 22 ~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D~-~~~~~~f~~~ 96 (167)
T PRK00522 22 DKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISADL-PFAQKRFCGA 96 (167)
T ss_pred CCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCCC-HHHHHHHHHh
Confidence 34589987 8999999999999999999999999 9999999999999998883 58999999985 4667889998
Q ss_pred CCCcccccCch-hhHHHHHhcCCCCcc---------EEEEECCCCcEEEccc
Q 008336 414 MPWLALPFGDA-RKASLSRKFKVSGIP---------MLVAIGPSGRTITKEA 455 (569)
Q Consensus 414 ~~~~~~~~~~d-~~~~l~~~~~v~~~P---------t~~lid~~G~i~~~~~ 455 (569)
++...++++.| ..+.+++.||+...| +++|||++|+|++.+.
T Consensus 97 ~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 97 EGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred CCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 87445788888 456999999998877 9999999999999864
|
|
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=146.87 Aligned_cols=111 Identities=24% Similarity=0.354 Sum_probs=91.6
Q ss_pred cCCcccee-cCCCCceecc--cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHh
Q 008336 336 SGDLDFVV-GKNGGKVPVS--DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 412 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~--~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 412 (569)
...|+|.+ +.+|+.++++ +++||+++|+||++||++|++++|.+.+++++. ++.+++|+.| +.+..++|++
T Consensus 50 ~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-----~~~vv~Is~~-~~~~~~~~~~ 123 (189)
T TIGR02661 50 DAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-----ETDVVMISDG-TPAEHRRFLK 123 (189)
T ss_pred CcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-----CCcEEEEeCC-CHHHHHHHHH
Confidence 34689988 8999999994 578999999999999999999999999987653 3678899854 6678899999
Q ss_pred cCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 413 GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 413 ~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+++ +.++... ...++.+.|++.++|+.++||++|+|++++
T Consensus 124 ~~~-~~~~~~~-~~~~i~~~y~v~~~P~~~lID~~G~I~~~g 163 (189)
T TIGR02661 124 DHE-LGGERYV-VSAEIGMAFQVGKIPYGVLLDQDGKIRAKG 163 (189)
T ss_pred hcC-CCcceee-chhHHHHhccCCccceEEEECCCCeEEEcc
Confidence 887 3333222 346789999999999999999999999873
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-17 Score=145.71 Aligned_cols=113 Identities=16% Similarity=0.235 Sum_probs=90.3
Q ss_pred ccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhHHHHHH
Q 008336 340 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSFDEFF 411 (569)
Q Consensus 340 ~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~~~~~~ 411 (569)
+|.+ +.+|+++++++++||++||+||++||++|++++|.|++++++++++ ++.|++|+++ .+.+..++|+
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEeccccccCCCCCHHHHHHHH
Confidence 5766 8999999999999999999999999999999999999999999876 6999999952 3457788999
Q ss_pred hc-CCCcccccCch-----hhHHHHHhcC---CCCccE----EEEECCCCcEEEccc
Q 008336 412 KG-MPWLALPFGDA-----RKASLSRKFK---VSGIPM----LVAIGPSGRTITKEA 455 (569)
Q Consensus 412 ~~-~~~~~~~~~~d-----~~~~l~~~~~---v~~~Pt----~~lid~~G~i~~~~~ 455 (569)
++ ++ +.||++.+ ........|. ..++|+ +||||++|+|+.+..
T Consensus 82 ~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~ 137 (153)
T TIGR02540 82 RRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWR 137 (153)
T ss_pred HHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEEC
Confidence 75 55 67887644 1111222232 346898 999999999999854
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.4e-17 Score=142.27 Aligned_cols=114 Identities=26% Similarity=0.411 Sum_probs=103.1
Q ss_pred Ccccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 338 DLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
.|+|.+ +.+|+.+++++++||+++|+|| ++||+.|..+++.|.++++++.++ ++.||+|++|. .+.+.+|+++++
T Consensus 3 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d~-~~~~~~~~~~~~ 79 (140)
T cd03017 3 APDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL--GAVVIGVSPDS-VESHAKFAEKYG 79 (140)
T ss_pred CCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCC-HHHHHHHHHHhC
Confidence 478887 8999999999999999999999 589999999999999999999865 69999999984 578899999887
Q ss_pred CcccccCchhhHHHHHhcCCCCc---------cEEEEECCCCcEEEccc
Q 008336 416 WLALPFGDARKASLSRKFKVSGI---------PMLVAIGPSGRTITKEA 455 (569)
Q Consensus 416 ~~~~~~~~d~~~~l~~~~~v~~~---------Pt~~lid~~G~i~~~~~ 455 (569)
+.+|++.|....+++.|++... |+++|||++|+|++...
T Consensus 80 -~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~ 127 (140)
T cd03017 80 -LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWR 127 (140)
T ss_pred -CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEe
Confidence 5788888988999999999988 99999999999999854
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=144.88 Aligned_cols=116 Identities=19% Similarity=0.358 Sum_probs=102.5
Q ss_pred cCccCCc-eecCCCceeecCCC-CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-------CHHH
Q 008336 16 SSSARDF-LIRSNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDEA 85 (569)
Q Consensus 16 g~~~pdf-~~~~~g~~v~l~~~-~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-------~~~~ 85 (569)
|..+|+| +.+.+|+.++++++ +|+ +||+||++|||.|..+++.|.++++++++. ++.+++|++|. +.+.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~ 79 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPEN 79 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHH
Confidence 6789999 55789999999998 889 999999999999999999999999999876 49999999975 5789
Q ss_pred HHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcC
Q 008336 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134 (569)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 134 (569)
+++|+++.+..+..+.+.. ..+.+.|++..+|+++|+|++|+|++..
T Consensus 80 ~~~~~~~~~~~~~~l~D~~--~~~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 80 MKAKAKEHGYPFPYLLDET--QEVAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HHHHHHHCCCCceEEECCc--hHHHHHcCCCcCCcEEEECCCCeEEEee
Confidence 9999999988766666554 3688999999999999999999999754
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-17 Score=148.00 Aligned_cols=114 Identities=22% Similarity=0.379 Sum_probs=93.7
Q ss_pred ccccCccCCce-ecCCCc--eeecCCC-CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 13 SLLSSSARDFL-IRSNGD--QVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 13 ~~~g~~~pdf~-~~~~g~--~v~l~~~-~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
..+|.++|+|. .+.+|+ .++++++ +|| ++|+||++||++|++++|.+++++++ ++.+++|+.++..+..+
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~ 108 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNAL 108 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHH
Confidence 46899999994 456776 5555565 789 99999999999999999999888652 38999999988888888
Q ss_pred HHHHhCCCccccc-CCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 88 GYFSKMPWLAVPF-SDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+|+++++..+..+ .|.. ..+.+.|++.++|++++||++|++++.
T Consensus 109 ~~~~~~~~~f~~v~~D~~--~~~~~~~~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 109 KFLKELGNPYQAILIDPN--GKLGLDLGVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred HHHHHcCCCCceEEECCC--CchHHhcCCeeCCeEEEEcCCceEEEE
Confidence 9999988766533 3333 468889999999999999999999874
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=143.23 Aligned_cols=115 Identities=21% Similarity=0.342 Sum_probs=101.4
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecC-CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+|.+ +.+|+.+++++++||++||+||++ ||+.|+.+++.|++++++++++ ++.||+|+.| +.+.+++|+++
T Consensus 8 ~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~--~v~vi~Is~d-~~~~~~~~~~~ 84 (154)
T PRK09437 8 DIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA--GVVVLGISTD-KPEKLSRFAEK 84 (154)
T ss_pred CcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCC-CHHHHHHHHHH
Confidence 34589988 899999999999999999999976 6788999999999999999875 6999999998 45888899998
Q ss_pred CCCcccccCchhhHHHHHhcCCCCc------------cEEEEECCCCcEEEcc
Q 008336 414 MPWLALPFGDARKASLSRKFKVSGI------------PMLVAIGPSGRTITKE 454 (569)
Q Consensus 414 ~~~~~~~~~~d~~~~l~~~~~v~~~------------Pt~~lid~~G~i~~~~ 454 (569)
++ +.+|++.|..+.+++.|++... |+++|||++|+|+...
T Consensus 85 ~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 136 (154)
T PRK09437 85 EL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVF 136 (154)
T ss_pred hC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEE
Confidence 86 6788888888899999998764 7789999999999985
|
|
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=148.21 Aligned_cols=116 Identities=18% Similarity=0.335 Sum_probs=91.0
Q ss_pred CCcccee-cCCCCceecccCCCCEE-EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSF 407 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~ 407 (569)
..|+|.+ +.+|+.+++++++||++ |+.|||+|||+|++++|.|++++++++++ ++.|++|++|. +.+..
T Consensus 19 ~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~~~~~~~~~~~~~~~ 96 (183)
T PTZ00256 19 SFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPCNQFMEQEPWDEPEI 96 (183)
T ss_pred cccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEecccccccCCCCHHHH
Confidence 3588988 89999999999999965 55669999999999999999999999876 69999999752 34677
Q ss_pred HHHHh-cCCCcccccCch--hhH----HHH------------HhcCCCCccE---EEEECCCCcEEEccc
Q 008336 408 DEFFK-GMPWLALPFGDA--RKA----SLS------------RKFKVSGIPM---LVAIGPSGRTITKEA 455 (569)
Q Consensus 408 ~~~~~-~~~~~~~~~~~d--~~~----~l~------------~~~~v~~~Pt---~~lid~~G~i~~~~~ 455 (569)
.+|+. +++ +.||+..| .++ .+. ..+++.++|+ +||||++|+|+.+..
T Consensus 97 ~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~ 165 (183)
T PTZ00256 97 KEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS 165 (183)
T ss_pred HHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence 88875 555 67787643 221 222 1246789995 699999999999864
|
|
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=141.90 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=101.1
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCC-ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+|.+ +.+|+.+++++++||++||+||++| |++|++++|.|++++++++ ++.|++|++|. ....++|.+.
T Consensus 4 ~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~-~~~~~~~~~~ 78 (143)
T cd03014 4 DKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADL-PFAQKRWCGA 78 (143)
T ss_pred CCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCC-HHHHHHHHHh
Confidence 34689988 8999999999999999999999998 6999999999999999973 58999999986 5677889888
Q ss_pred CCCcccccCchhh-HHHHHhcCCCC------ccEEEEECCCCcEEEccc
Q 008336 414 MPWLALPFGDARK-ASLSRKFKVSG------IPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 414 ~~~~~~~~~~d~~-~~l~~~~~v~~------~Pt~~lid~~G~i~~~~~ 455 (569)
++...++++.|.. ..+++.|++.. .|++||||++|+|+..+.
T Consensus 79 ~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 79 EGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVEL 127 (143)
T ss_pred cCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEE
Confidence 8766788888875 88999999864 799999999999999864
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=140.71 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=98.8
Q ss_pred ccCccCCc-eecCCCceeecCCCCC-c-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSLKG-K-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~~g-k-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
+|..+|+| +.+.+|+.+++++++| | ++|.|| ++||+.|+..+|.|+++++++++++ +.+++|+.| +.+.+++|+
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-v~vi~vs~d-~~~~~~~~~ 80 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG-AEVLGISVD-SPFSLRAWA 80 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC-CEEEEecCC-CHHHHHHHH
Confidence 68999999 4567999999999999 8 888887 9999999999999999999998765 999999988 466799999
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCCC----c--cEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVMG----I--PHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~----~--P~~~lid~~G~i~~~ 133 (569)
++++..+..+.|......+.+.|++.. + |+++|||++|+|++.
T Consensus 81 ~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~ 129 (149)
T cd03018 81 EENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYA 129 (149)
T ss_pred HhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEE
Confidence 998877666666542246888999873 3 489999999999875
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.9e-16 Score=162.31 Aligned_cols=132 Identities=16% Similarity=0.257 Sum_probs=103.4
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-----CCHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-----EDDEAF 86 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-----~~~~~~ 86 (569)
..+.++|+| +.+++|+.+.++ +|| |||+|||+||++|+.++|.|.+++++++..+ +.||+|+++ .+.+.+
T Consensus 33 ~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~-v~VI~Vs~~~~~~e~~~~~~ 109 (521)
T PRK14018 33 TVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS-ANLITVASPGFLHEKKDGDF 109 (521)
T ss_pred cccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC-eEEEEEecccccccccHHHH
Confidence 446789999 668999999998 899 9999999999999999999999999998654 999999863 345677
Q ss_pred HHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHH
Q 008336 87 KGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160 (569)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (569)
+++++..++..+++..+. ...+.+.|+|.++|+++|||++|+|+... .| ..+.+++.++++.
T Consensus 110 ~~~~~~~~y~~~pV~~D~-~~~lak~fgV~giPTt~IIDkdGkIV~~~-------~G----~~~~eeL~a~Ie~ 171 (521)
T PRK14018 110 QKWYAGLDYPKLPVLTDN-GGTLAQSLNISVYPSWAIIGKDGDVQRIV-------KG----SISEAQALALIRN 171 (521)
T ss_pred HHHHHhCCCcccceeccc-cHHHHHHcCCCCcCeEEEEcCCCeEEEEE-------eC----CCCHHHHHHHHHH
Confidence 888887776544432222 24789999999999999999999998742 12 2345666666653
|
|
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=143.10 Aligned_cols=123 Identities=10% Similarity=0.051 Sum_probs=96.3
Q ss_pred CCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEE------EEEeCCCChhHHHHHH----hcC
Q 008336 345 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEV------VFISSDRDQTSFDEFF----KGM 414 (569)
Q Consensus 345 ~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~v------v~is~d~~~~~~~~~~----~~~ 414 (569)
.+.+.++.++++||+.||+|||+||++|+.++|.|.++.+ + ++.+ ++|+.|+.......|+ ++.
T Consensus 47 ~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~ 120 (184)
T TIGR01626 47 TVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----A--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKG 120 (184)
T ss_pred ccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----c--CCCcccccceEEEECccchhhHHHHHHHHHHHh
Confidence 3456788899999999999999999999999999988832 2 4677 9999997655544444 333
Q ss_pred CCccc---ccCchhhHHHHHhcCCCCccEE-EEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhh
Q 008336 415 PWLAL---PFGDARKASLSRKFKVSGIPML-VAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 485 (569)
Q Consensus 415 ~~~~~---~~~~d~~~~l~~~~~v~~~Pt~-~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~ 485 (569)
. ..+ ++..|..+.+...|++.++|++ ||||++|+|+.++.| +.+.+.++++...+++++
T Consensus 121 ~-~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G-----------~l~~ee~e~~~~li~~ll 183 (184)
T TIGR01626 121 K-KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEG-----------ALSDSDIQTVISLVNGLL 183 (184)
T ss_pred c-ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeC-----------CCCHHHHHHHHHHHHHHh
Confidence 3 333 4777878889999999999988 899999999999654 256677777777777665
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=145.09 Aligned_cols=135 Identities=21% Similarity=0.282 Sum_probs=106.4
Q ss_pred CCcccee-cCCC----CceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHH
Q 008336 337 GDLDFVV-GKNG----GKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 410 (569)
Q Consensus 337 ~~~~f~~-~~~g----~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~ 410 (569)
..|+|.+ +.+| +.+++++++||++||+|| ++||++|..+++.|+++++++.++ ++.|++|++|.. ...+.+
T Consensus 4 ~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~--~v~vv~Is~d~~-~~~~~~ 80 (173)
T cd03015 4 KAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL--NAEVLGVSTDSH-FSHLAW 80 (173)
T ss_pred cCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEecCCH-HHHHHH
Confidence 4588887 6666 789999999999999999 899999999999999999999875 799999999854 333445
Q ss_pred HhcC------CCcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHH
Q 008336 411 FKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEID 478 (569)
Q Consensus 411 ~~~~------~~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~ 478 (569)
.+.. .-+.|+++.|....+++.|++. .+|+++|||++|+|++++... .|. .+..+++.
T Consensus 81 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~---------~~~-~~~~~~il 150 (173)
T cd03015 81 RNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVND---------LPV-GRSVDETL 150 (173)
T ss_pred HHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecC---------CCC-CCCHHHHH
Confidence 4432 2367889999999999999987 678999999999999986321 122 22446666
Q ss_pred HHhhhh
Q 008336 479 GQYNEM 484 (569)
Q Consensus 479 ~~l~~l 484 (569)
+.|+.+
T Consensus 151 ~~l~~~ 156 (173)
T cd03015 151 RVLDAL 156 (173)
T ss_pred HHHHHh
Confidence 666655
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=133.31 Aligned_cols=110 Identities=34% Similarity=0.624 Sum_probs=100.1
Q ss_pred cee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC-hhHHHHHHhcCCCcc
Q 008336 341 FVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD-QTSFDEFFKGMPWLA 418 (569)
Q Consensus 341 f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~-~~~~~~~~~~~~~~~ 418 (569)
|.+ +.+|+.+++++++||+++|+||++||++|++.++.|.++.++++.. ++.+++|++|.. .+.+++++++++ ..
T Consensus 2 ~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~~~~-~~ 78 (116)
T cd02966 2 FSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD--GVEVVGVNVDDDDPAAVKAFLKKYG-IT 78 (116)
T ss_pred ccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC--CeEEEEEECCCCCHHHHHHHHHHcC-CC
Confidence 445 7889999999999999999999999999999999999999998733 699999999986 899999999988 67
Q ss_pred cccCchhhHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 419 LPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 419 ~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
+++..+....+.+.|++.++|+++|+|++|+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 79 FPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred cceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 88888878889999999999999999999999987
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=139.72 Aligned_cols=114 Identities=25% Similarity=0.272 Sum_probs=95.2
Q ss_pred ccCccCCc-eecCCCceeecCCCCCc-EEEEEecCC-CHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHH
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASW-CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~w-C~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~ 91 (569)
+|.++|+| +.+.+|+.+++++++|| ++|+||++| |++|+.++|.|.++++++. ++.|++|+.|. .+..++|.+
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~-~~~~~~~~~ 77 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADL-PFAQKRWCG 77 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCC-HHHHHHHHH
Confidence 68999999 55689999999999999 999999999 6999999999999999973 48999999985 667788888
Q ss_pred hCCCcccc-cCCchhHHHHHHhcCCCC------ccEEEEECCCCcEEEc
Q 008336 92 KMPWLAVP-FSDSETRDKLDELFKVMG------IPHLVILDENGKVLSD 133 (569)
Q Consensus 92 ~~~~~~~~-~~~~~~~~~l~~~~~v~~------~P~~~lid~~G~i~~~ 133 (569)
+.+...++ +.+.. ...+.+.|++.. .|+++|||++|+|+..
T Consensus 78 ~~~~~~~~~l~D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~ 125 (143)
T cd03014 78 AEGVDNVTTLSDFR-DHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYV 125 (143)
T ss_pred hcCCCCceEeecCc-ccHHHHHhCCeeccCCccceEEEEEcCCCeEEEE
Confidence 88763333 34432 246888999863 6999999999999875
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=146.04 Aligned_cols=117 Identities=24% Similarity=0.320 Sum_probs=97.7
Q ss_pred cCCcccee-c-CCCC--ceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHH
Q 008336 336 SGDLDFVV-G-KNGG--KVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 410 (569)
Q Consensus 336 ~~~~~f~~-~-~~g~--~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~ 410 (569)
...|+|.+ + .+|+ .+++++++||++||+|| ++||++|..+++.|++++++++++ +++|++||+|.. ...++|
T Consensus 6 ~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~--gv~vi~VS~D~~-~~~~~~ 82 (187)
T TIGR03137 6 TEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL--GVEVYSVSTDTH-FVHKAW 82 (187)
T ss_pred CcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc--CCcEEEEeCCCH-HHHHHH
Confidence 45699987 5 5676 68888999999999999 999999999999999999999865 799999999964 444555
Q ss_pred HhcC---CCcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccc
Q 008336 411 FKGM---PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 411 ~~~~---~~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~ 455 (569)
.+.. .-+.||++.|....+++.|+|. ..|++||||++|+|++...
T Consensus 83 ~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~ 136 (187)
T TIGR03137 83 HDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEI 136 (187)
T ss_pred HhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEE
Confidence 4432 2367889999999999999986 4699999999999999853
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-16 Score=138.85 Aligned_cols=116 Identities=23% Similarity=0.321 Sum_probs=100.6
Q ss_pred CCcccee-cCCCCceecccCCC-CEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAG-KTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~g-k~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
..|+|.+ +.+|+.+++++++| |+++|.|| ++||++|.+.+|.|++++++++++ ++.+++|+.|. .+..++|+++
T Consensus 6 ~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~-~~~~~~~~~~ 82 (149)
T cd03018 6 KAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA--GAEVLGISVDS-PFSLRAWAEE 82 (149)
T ss_pred cCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC--CCEEEEecCCC-HHHHHHHHHh
Confidence 3578877 88999999999999 99999888 999999999999999999999865 69999999884 5678899988
Q ss_pred CCCcccccCchhh--HHHHHhcCCC----Cc--cEEEEECCCCcEEEccch
Q 008336 414 MPWLALPFGDARK--ASLSRKFKVS----GI--PMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 414 ~~~~~~~~~~d~~--~~l~~~~~v~----~~--Pt~~lid~~G~i~~~~~~ 456 (569)
++ +.+|++.|.. ..+++.|++. ++ |+++|||++|+|++++.+
T Consensus 83 ~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~ 132 (149)
T cd03018 83 NG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVS 132 (149)
T ss_pred cC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEec
Confidence 87 6788888876 8899999987 33 489999999999999643
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=140.59 Aligned_cols=116 Identities=20% Similarity=0.267 Sum_probs=92.8
Q ss_pred ccCccCCcee-cCCC----ceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 15 LSSSARDFLI-RSNG----DQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 15 ~g~~~pdf~~-~~~g----~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
+|+++|+|.+ +.+| +.+++++++|| +||+|| ++||++|..++|.|++++++|.+.+ +.|++|++|.. +...
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~-v~vv~Is~d~~-~~~~ 78 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN-AEVLGVSTDSH-FSHL 78 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEecCCH-HHHH
Confidence 5899999954 5565 78999999999 999999 8999999999999999999998775 99999999853 3344
Q ss_pred HHHHh-------CCCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEcC
Q 008336 88 GYFSK-------MPWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSDG 134 (569)
Q Consensus 88 ~~~~~-------~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 134 (569)
++.+. .++.+..+.|.. ..+.+.|++. .+|+++|||++|+|++..
T Consensus 79 ~~~~~~~~~~~~~~~~f~~l~D~~--~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 79 AWRNTPRKEGGLGKINFPLLADPK--KKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred HHHHhhhhhCCccCcceeEEECCc--hhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 55443 234444445544 4688999986 678999999999998853
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-16 Score=142.76 Aligned_cols=137 Identities=15% Similarity=0.206 Sum_probs=108.5
Q ss_pred ccCCcccee----cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHH
Q 008336 335 VSGDLDFVV----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 409 (569)
Q Consensus 335 ~~~~~~f~~----~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~ 409 (569)
....|+|.. +.+..+++|++++||++||+|| +.||+.|..+++.|.++++++.++ +++|++||.|.. ...++
T Consensus 5 ~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~--g~~vigIS~D~~-~~~~a 81 (187)
T PRK10382 5 NTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTDTH-FTHKA 81 (187)
T ss_pred CCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCH-HHHHH
Confidence 445688854 4556678889999999999999 999999999999999999999876 699999999854 56666
Q ss_pred HHhcC---CCcccccCchhhHHHHHhcCC----CCc--cEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHH
Q 008336 410 FFKGM---PWLALPFGDARKASLSRKFKV----SGI--PMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 480 (569)
Q Consensus 410 ~~~~~---~~~~~~~~~d~~~~l~~~~~v----~~~--Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~ 480 (569)
|.+.. .-+.||++.|.+..+++.|++ .++ |++||||++|+|++...... ..+++.+++.+.
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~----------~~~~~~~eil~~ 151 (187)
T PRK10382 82 WHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAE----------GIGRDASDLLRK 151 (187)
T ss_pred HHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCC----------CCCCCHHHHHHH
Confidence 66543 347889999999999999998 356 99999999999999854221 123456667666
Q ss_pred hhhh
Q 008336 481 YNEM 484 (569)
Q Consensus 481 l~~l 484 (569)
|+.+
T Consensus 152 l~al 155 (187)
T PRK10382 152 IKAA 155 (187)
T ss_pred HHhh
Confidence 6554
|
|
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=144.81 Aligned_cols=117 Identities=25% Similarity=0.364 Sum_probs=90.2
Q ss_pred cCccCCc-eecCCCceeecCCCCCc-EE-EEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-------CHHH
Q 008336 16 SSSARDF-LIRSNGDQVKLDSLKGK-IG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDEA 85 (569)
Q Consensus 16 g~~~pdf-~~~~~g~~v~l~~~~gk-vl-v~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-------~~~~ 85 (569)
+..+|+| +.+.+|+.+++++++|| ++ +.|||+|||+|+.++|.|++++++|++++ +.|++|+++. +.+.
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g-v~vv~vs~~~~~~~~~~~~~~ 95 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG-LEILAFPCNQFMEQEPWDEPE 95 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC-cEEEEEecccccccCCCCHHH
Confidence 5788999 55789999999999999 54 56699999999999999999999998875 9999999752 4577
Q ss_pred HHHHHH-hCCCcccccCC--chh--HHHHH------------HhcCCCCccE---EEEECCCCcEEEc
Q 008336 86 FKGYFS-KMPWLAVPFSD--SET--RDKLD------------ELFKVMGIPH---LVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~--~~~--~~~l~------------~~~~v~~~P~---~~lid~~G~i~~~ 133 (569)
+.+|+. ++++.++.+.+ ... ...+. ..+++.++|+ +||||++|+|+.+
T Consensus 96 ~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~ 163 (183)
T PTZ00256 96 IKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKY 163 (183)
T ss_pred HHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEE
Confidence 888876 66766555532 111 11222 1246778995 6999999999975
|
|
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.6e-16 Score=133.71 Aligned_cols=115 Identities=23% Similarity=0.349 Sum_probs=105.1
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+|.+ +.+|+.++|++++||+|||+|| ..++|.|..++-.+++.+.+|... +.+|++||.|.. ...++|.++
T Consensus 8 ~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~--~a~V~GIS~Ds~-~~~~~F~~k 84 (157)
T COG1225 8 DKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL--GAVVLGISPDSP-KSHKKFAEK 84 (157)
T ss_pred CcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC--CCEEEEEeCCCH-HHHHHHHHH
Confidence 45799998 9999999999999999999999 789999999999999999999876 799999999954 788999999
Q ss_pred CCCcccccCchhhHHHHHhcCCC------------CccEEEEECCCCcEEEcc
Q 008336 414 MPWLALPFGDARKASLSRKFKVS------------GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 414 ~~~~~~~~~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~ 454 (569)
++ ++||+++|...++++.|||. ..+++||||++|+|++..
T Consensus 85 ~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 85 HG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred hC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 98 77999999999999999984 358999999999999984
|
|
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=141.89 Aligned_cols=116 Identities=25% Similarity=0.342 Sum_probs=92.9
Q ss_pred cccCccCCce-ec-CCCc--eeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 14 LLSSSARDFL-IR-SNGD--QVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 14 ~~g~~~pdf~-~~-~~g~--~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
++|+++|+|. .+ .+|+ .+++++++|| ++|+|| ++||++|..++|.|++++++|.+.+ ++|++|++|. ....+
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g-v~vi~VS~D~-~~~~~ 80 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG-VEVYSVSTDT-HFVHK 80 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC-CcEEEEeCCC-HHHHH
Confidence 6899999995 44 4676 6888899999 999999 9999999999999999999998775 9999999995 34455
Q ss_pred HHHHhC----CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 88 GYFSKM----PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~----~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
+|.+.. ++.+..+.|.+ ..+++.||+. ..|++||||++|+|+..
T Consensus 81 ~~~~~~~~~~~l~fpllsD~~--~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~ 134 (187)
T TIGR03137 81 AWHDTSEAIGKITYPMLGDPT--GVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAV 134 (187)
T ss_pred HHHhhhhhccCcceeEEECCc--cHHHHHhCCcccCCCceeeEEEEECCCCEEEEE
Confidence 554432 23333445543 5789999986 46999999999999874
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-16 Score=139.20 Aligned_cols=116 Identities=25% Similarity=0.350 Sum_probs=99.2
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecC-CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|.++|+| +.+.+|+.+++++++|| +||+||++ ||+.|+.+++.|.++++++++++ +++++|+.| +.+.+++|+
T Consensus 5 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~-v~vi~Is~d-~~~~~~~~~ 82 (154)
T PRK09437 5 KAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG-VVVLGISTD-KPEKLSRFA 82 (154)
T ss_pred CCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEcCC-CHHHHHHHH
Confidence 469999999 55789999999999999 99999986 68889999999999999998875 999999998 568889999
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCCCc------------cEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVMGI------------PHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~------------P~~~lid~~G~i~~~ 133 (569)
++++..+..+.|.. ..+.+.|++... |+++|||++|+|+..
T Consensus 83 ~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 83 EKELLNFTLLSDED--HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred HHhCCCCeEEECCC--chHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 99987666565544 468889998654 778999999999874
|
|
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-16 Score=134.12 Aligned_cols=107 Identities=25% Similarity=0.485 Sum_probs=94.6
Q ss_pred cccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-ChhHHHHHHhcCCC
Q 008336 339 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-DQTSFDEFFKGMPW 416 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~~ 416 (569)
|+|.+ +.+|+.+++.+++||+++|+||++||++|+.++|.|++++++ +.+++|+.|. +++.+++++++++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~- 72 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKG- 72 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcC-
Confidence 57777 899999999999999999999999999999999999988766 4678888775 4788999999988
Q ss_pred cccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 417 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 417 ~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+.+|+..|.+..+++.|++.++|+++|||++| ++++.
T Consensus 73 ~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~ 109 (123)
T cd03011 73 YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVT 109 (123)
T ss_pred CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEE
Confidence 68888888888999999999999999999999 87764
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-16 Score=136.61 Aligned_cols=113 Identities=29% Similarity=0.419 Sum_probs=98.8
Q ss_pred CccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhC
Q 008336 17 SSARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (569)
Q Consensus 17 ~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~ 93 (569)
.++|+| +.+.+|+.+++++++|| ++|+|| ++||+.|..+++.|.++++++.+++ ++|++|+.| +.+.+++|++++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-~~vv~is~d-~~~~~~~~~~~~ 78 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG-AVVIGVSPD-SVESHAKFAEKY 78 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEcCC-CHHHHHHHHHHh
Confidence 368999 56789999999999999 999999 5899999999999999999998765 999999998 567889999998
Q ss_pred CCcccccCCchhHHHHHHhcCCCCc---------cEEEEECCCCcEEEc
Q 008336 94 PWLAVPFSDSETRDKLDELFKVMGI---------PHLVILDENGKVLSD 133 (569)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~~~---------P~~~lid~~G~i~~~ 133 (569)
+..+..+.|.+ ..+.+.|++... |+++++|++|+|++.
T Consensus 79 ~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 79 GLPFPLLSDPD--GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred CCCceEEECCc--cHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence 87766666554 368899999988 999999999999874
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=135.60 Aligned_cols=117 Identities=23% Similarity=0.358 Sum_probs=103.3
Q ss_pred Ccccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 338 DLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
.|+|.+ +.+|+++++++++||+++|+|| ++||++|..+++.|++++++++.. ++.|++|+.| ++...++|.++++
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d-~~~~~~~~~~~~~ 78 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVD-SPFSHKAWAEKEG 78 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHHHHHHHhccc
Confidence 378887 8999999999999999999999 789999999999999999999654 6999999987 4577889999884
Q ss_pred CcccccCchhhHHHHHhcCCCCcc---------EEEEECCCCcEEEccchh
Q 008336 416 WLALPFGDARKASLSRKFKVSGIP---------MLVAIGPSGRTITKEARD 457 (569)
Q Consensus 416 ~~~~~~~~d~~~~l~~~~~v~~~P---------t~~lid~~G~i~~~~~~~ 457 (569)
-..++++.|....+.+.|++...| +++|||++|+|++++.+.
T Consensus 79 ~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 79 GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecC
Confidence 478888889888999999988766 899999999999996543
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5e-15 Score=129.25 Aligned_cols=116 Identities=24% Similarity=0.360 Sum_probs=104.1
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|++|||| +.+.+|+.++|++++|| |+|+|| ..++|.|..++-.|+..+.+|...+ .+|++||.| +....++|.
T Consensus 5 ~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~-a~V~GIS~D-s~~~~~~F~ 82 (157)
T COG1225 5 KVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG-AVVLGISPD-SPKSHKKFA 82 (157)
T ss_pred CCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC-CEEEEEeCC-CHHHHHHHH
Confidence 479999999 66789999999999999 999998 7899999999999999999999885 999999999 678899999
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCC------------CccEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVM------------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~ 133 (569)
++++..+..++|.+. .+++.||+. ..+++||||++|+|+..
T Consensus 83 ~k~~L~f~LLSD~~~--~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~ 135 (157)
T COG1225 83 EKHGLTFPLLSDEDG--EVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYV 135 (157)
T ss_pred HHhCCCceeeECCcH--HHHHHhCcccccccCccccccccceEEEECCCCeEEEE
Confidence 999999888887775 699999973 35889999999999874
|
|
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.2e-16 Score=138.18 Aligned_cols=112 Identities=20% Similarity=0.254 Sum_probs=86.9
Q ss_pred Cc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHHHHHH
Q 008336 21 DF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGYFS 91 (569)
Q Consensus 21 df-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~~~~~~~~ 91 (569)
+| +.+.+|+.+++++++|| +||+|||+|||+|++++|.|.+++++|++++ +.|++|+++ ++.+.+++|++
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~-~~v~~i~~~~~~~~~~d~~~~~~~f~~ 82 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH-FNVLAFPCNQFGESEPDSSKEIESFAR 82 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC-eEEEEEeccccccCCCCCHHHHHHHHH
Confidence 56 45689999999999999 9999999999999999999999999999875 999999962 45678899997
Q ss_pred h-CCCcccccCCc---hhHHHHHHhcC---CCCccE----EEEECCCCcEEEc
Q 008336 92 K-MPWLAVPFSDS---ETRDKLDELFK---VMGIPH----LVILDENGKVLSD 133 (569)
Q Consensus 92 ~-~~~~~~~~~~~---~~~~~l~~~~~---v~~~P~----~~lid~~G~i~~~ 133 (569)
+ ++..++.+.+. +........|. ..++|+ +||||++|+|+..
T Consensus 83 ~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~ 135 (153)
T TIGR02540 83 RNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF 135 (153)
T ss_pred HhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEE
Confidence 6 67666555431 11011111222 346898 9999999999975
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.6e-15 Score=139.49 Aligned_cols=173 Identities=17% Similarity=0.179 Sum_probs=111.0
Q ss_pred CcEEEEEEec---CCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhc
Q 008336 197 GKTIGLYFSM---SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (569)
Q Consensus 197 gk~v~l~f~~---~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f 273 (569)
+..+.+ |++ +||++|+.+.|.+.+++..+. .+++.++.+|.++ ...+++.|
T Consensus 20 ~~~i~~-f~~~~a~wC~~C~~~~p~l~~la~~~~----~~~i~~v~vd~~~---------------------~~~l~~~~ 73 (215)
T TIGR02187 20 PVEIVV-FTDNDKEGCQYCKETEQLLEELSEVSP----KLKLEIYDFDTPE---------------------DKEEAEKY 73 (215)
T ss_pred CeEEEE-EcCCCCCCCCchHHHHHHHHHHHhhCC----CceEEEEecCCcc---------------------cHHHHHHc
Confidence 344444 555 999999999999999888762 2457778877654 56889999
Q ss_pred ccCCCceEEEECCCCCchh-hhhHHHHHhhCCCCCCCChHHHHHHHHHHHH-HHhhhhhhhhhccCCccceecCCCCcee
Q 008336 274 ELSTLPTLVIIGPDGKTLH-SNVAEAIEEHGVGAFPFTPEKFAELAEIQRA-KEESQTLESVLVSGDLDFVVGKNGGKVP 351 (569)
Q Consensus 274 ~v~~~Ptlvi~~~~g~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~g~~v~ 351 (569)
+|.++||+++++.+ +... .. .| ..+.+.+..+...... ....+. ++.. ..-.
T Consensus 74 ~V~~~Pt~~~f~~g-~~~~~~~-------~G----~~~~~~l~~~i~~~~~~~~~~~~-------------L~~~-~~~~ 127 (215)
T TIGR02187 74 GVERVPTTIILEEG-KDGGIRY-------TG----IPAGYEFAALIEDIVRVSQGEPG-------------LSEK-TVEL 127 (215)
T ss_pred CCCccCEEEEEeCC-eeeEEEE-------ee----cCCHHHHHHHHHHHHHhcCCCCC-------------CCHH-HHHH
Confidence 99999999999753 3321 10 01 1123444444432210 000000 0000 0011
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 352 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 352 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
+.++.+.++++.||++||++|+.+.+.++++..+. .++.+..++.+..+ ++++
T Consensus 128 l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~i~~~~vD~~~~~-----------------------~~~~ 180 (215)
T TIGR02187 128 LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DKILGEMIEANENP-----------------------DLAE 180 (215)
T ss_pred HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----CceEEEEEeCCCCH-----------------------HHHH
Confidence 12234556677799999999999999888776653 24677777766654 4889
Q ss_pred hcCCCCccEEEEECCCCc
Q 008336 432 KFKVSGIPMLVAIGPSGR 449 (569)
Q Consensus 432 ~~~v~~~Pt~~lid~~G~ 449 (569)
.|+|.++||+++. .+|+
T Consensus 181 ~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 181 KYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred HhCCccCCEEEEe-cCCE
Confidence 9999999999987 5665
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=135.38 Aligned_cols=115 Identities=27% Similarity=0.471 Sum_probs=97.1
Q ss_pred Ccccee-cCCCCceecccCCCCEEEEEEecCCChh-HHhhhHHHHHHHHHHhhcC-CCeEEEEEeCCC---ChhHHHHHH
Q 008336 338 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERN-ESLEVVFISSDR---DQTSFDEFF 411 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~-~~~~vv~is~d~---~~~~~~~~~ 411 (569)
.|+|.+ +.+|+.+++.+++||++||+||++||++ |.++++.|++++++++++. .++.+++|++|. +++.+++|+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~ 81 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYA 81 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHH
Confidence 478887 8999999999999999999999999998 9999999999999998652 359999999974 457789999
Q ss_pred hcCCCcccccCchh---hHHHHHhcCCCCc--------------cEEEEECCCCcEEEc
Q 008336 412 KGMPWLALPFGDAR---KASLSRKFKVSGI--------------PMLVAIGPSGRTITK 453 (569)
Q Consensus 412 ~~~~~~~~~~~~d~---~~~l~~~~~v~~~--------------Pt~~lid~~G~i~~~ 453 (569)
+.++ ..++++.+. ...+++.|++... |+++|||++|+|+..
T Consensus 82 ~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 82 KAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 9886 456665543 4788999997644 579999999999987
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=141.68 Aligned_cols=137 Identities=19% Similarity=0.249 Sum_probs=107.3
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEE-EEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChh--HH-HHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILL-YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT--SF-DEF 410 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~--~~-~~~ 410 (569)
...|+|.+ +..| .+++++++||+++| +||++||++|..+++.|.+++++++++ +++|++||+|.... +| +.+
T Consensus 6 ~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~D~~~~~~~w~~~~ 82 (202)
T PRK13190 6 QKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSVDSIYSHIAWLRDI 82 (202)
T ss_pred CCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhH
Confidence 34689988 6666 79999999997766 688999999999999999999999876 79999999996422 22 233
Q ss_pred HhcCC-CcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhh
Q 008336 411 FKGMP-WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNE 483 (569)
Q Consensus 411 ~~~~~-~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~ 483 (569)
.+..+ .+.||++.|.++.+++.||+. .+|++||||++|+|++..... .-.+++++++.+.|+.
T Consensus 83 ~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~----------~~~gr~~~ellr~l~~ 152 (202)
T PRK13190 83 EERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYP----------AETGRNIDEIIRITKA 152 (202)
T ss_pred HHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeC----------CCCCCCHHHHHHHHHH
Confidence 34444 367999999999999999985 589999999999999874321 1234567778777776
Q ss_pred hh
Q 008336 484 MA 485 (569)
Q Consensus 484 l~ 485 (569)
+.
T Consensus 153 l~ 154 (202)
T PRK13190 153 LQ 154 (202)
T ss_pred hh
Confidence 65
|
|
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-15 Score=126.87 Aligned_cols=110 Identities=32% Similarity=0.567 Sum_probs=96.6
Q ss_pred Cc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC-HHHHHHHHHhCCCcc
Q 008336 21 DF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED-DEAFKGYFSKMPWLA 97 (569)
Q Consensus 21 df-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~-~~~~~~~~~~~~~~~ 97 (569)
+| +.+.+|+.+++++++|| ++|+||++||++|+..++.+.++.+++.+. ++.+++|++|.. .+.++++++++++.+
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~~v~~d~~~~~~~~~~~~~~~~~~ 79 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD-GVEVVGVNVDDDDPAAVKAFLKKYGITF 79 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC-CeEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence 35 34679999999999999 999999999999999999999999999754 599999999987 999999999998766
Q ss_pred cccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 98 VPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 98 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
..+.+.. ..+.+.|++.++|+++|+|++|+++..
T Consensus 80 ~~~~~~~--~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 80 PVLLDPD--GELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred ceEEcCc--chHHHhcCcCccceEEEECCCCcEEEE
Confidence 6665543 468999999999999999999999864
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-15 Score=135.09 Aligned_cols=114 Identities=23% Similarity=0.453 Sum_probs=96.3
Q ss_pred Ccccee-cCCCCceecccCC-CCEE-EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 338 DLDFVV-GKNGGKVPVSDLA-GKTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~-gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
.|+|.+ +.+|+.++++++. ++++ |++||++||++|+.++|.|++++++++++ ++.||+|+.|.. +....|.+..
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~~~~-~~~~~~~~~~ 78 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGPESP-EKLEAFDKGK 78 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeCCCH-HHHHHHHHhc
Confidence 478887 8999999999875 4554 55556999999999999999999999865 699999999865 4555777776
Q ss_pred CCcccccCchhhHHHHHhcCCC-----------------------------CccEEEEECCCCcEEEccc
Q 008336 415 PWLALPFGDARKASLSRKFKVS-----------------------------GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 415 ~~~~~~~~~d~~~~l~~~~~v~-----------------------------~~Pt~~lid~~G~i~~~~~ 455 (569)
+ +.+|++.|.+..+.+.|++. .+|++||||++|+|++.+.
T Consensus 79 ~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~ 147 (149)
T cd02970 79 F-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHV 147 (149)
T ss_pred C-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEec
Confidence 6 68999999999999999984 7999999999999999853
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-15 Score=135.82 Aligned_cols=95 Identities=19% Similarity=0.262 Sum_probs=79.8
Q ss_pred CCccceecCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCC
Q 008336 337 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 416 (569)
Q Consensus 337 ~~~~f~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 416 (569)
..++|.+ .+|+.+++++++ +|+||++||++|++++|.|+++++++ ++.|++|++|...+
T Consensus 54 ~~~~f~l-~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~-----g~~Vi~Vs~D~~~~----------- 112 (181)
T PRK13728 54 APRWFRL-SNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY-----GFSVFPYTLDGQGD----------- 112 (181)
T ss_pred CCCccCC-CCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc-----CCEEEEEEeCCCCC-----------
Confidence 4567766 489999999987 77899999999999999999999997 38999999986642
Q ss_pred cccccCch-hhHHHHHhcCC--CCccEEEEECCCCcEEE
Q 008336 417 LALPFGDA-RKASLSRKFKV--SGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 417 ~~~~~~~d-~~~~l~~~~~v--~~~Pt~~lid~~G~i~~ 452 (569)
..||...+ ....+.+.|++ .++|++||||++|+++.
T Consensus 113 ~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 57888764 55667788995 69999999999999975
|
|
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-15 Score=141.01 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=110.9
Q ss_pred hccCCcccee-cCCCCceecccCCCCEE-EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--hhHHHH
Q 008336 334 LVSGDLDFVV-GKNGGKVPVSDLAGKTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QTSFDE 409 (569)
Q Consensus 334 ~~~~~~~f~~-~~~g~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~--~~~~~~ 409 (569)
+....|+|.+ +.+|+.+.+++++||++ |+.||+.|||+|..+++.|++++++|+++ ++.|++||+|.. ...|.+
T Consensus 4 ~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~--gv~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 4 LGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL--NTELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHH
Confidence 3445699988 78998888899999975 67888999999999999999999999876 699999999974 345666
Q ss_pred HHhcC--CCcccccCchhhHHHHHhcCCC-------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHH
Q 008336 410 FFKGM--PWLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 480 (569)
Q Consensus 410 ~~~~~--~~~~~~~~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~ 480 (569)
+++++ .-+.||++.|.+..+++.||+. ..|++||||++|+|+...... ...+++++++.+.
T Consensus 82 ~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p----------~~~gr~~~eilr~ 151 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYP----------QEVGRNVDEILRA 151 (215)
T ss_pred hHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcC----------CCCCCCHHHHHHH
Confidence 66643 1367999999999999999983 689999999999999984211 1234567777777
Q ss_pred hhhh
Q 008336 481 YNEM 484 (569)
Q Consensus 481 l~~l 484 (569)
|+.+
T Consensus 152 l~~l 155 (215)
T PRK13599 152 LKAL 155 (215)
T ss_pred HHHh
Confidence 7665
|
|
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-15 Score=133.08 Aligned_cols=116 Identities=28% Similarity=0.457 Sum_probs=96.1
Q ss_pred ccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHh-hHhhHHHHHHHHHHhcCCC--CEEEEEEeCCC---CHHHHHHH
Q 008336 18 SARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGP-CQRFTPILAEVYNELSRQG--DFEVIFVSGDE---DDEAFKGY 89 (569)
Q Consensus 18 ~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~-C~~~~p~l~~~~~~~~~~g--~~~vv~v~~d~---~~~~~~~~ 89 (569)
.+|+| +.+.+|+.+++++++|| ++|+||++||++ |.++++.|+++++++++.+ ++.+++|+.|. +.+.+++|
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence 47999 55789999999999999 999999999997 9999999999999998763 59999999974 46889999
Q ss_pred HHhCCCcccccCCch-hHHHHHHhcCCCCc--------------cEEEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDSE-TRDKLDELFKVMGI--------------PHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~-~~~~l~~~~~v~~~--------------P~~~lid~~G~i~~~ 133 (569)
+++++..+..+.+.. ....+++.||+... |+++|||++|+|+..
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 81 AKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 999875555454433 34578899997543 578999999999874
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=138.57 Aligned_cols=173 Identities=17% Similarity=0.184 Sum_probs=107.5
Q ss_pred CCCc-EEEEEec---CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHH
Q 008336 36 LKGK-IGLYFSA---SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (569)
Q Consensus 36 ~~gk-vlv~F~a---~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (569)
+++. .++.|++ +||++|+.+.|.+.++++++. ++.+..+++|.+.. ..+++
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~---~~~i~~v~vd~~~~----------------------~~l~~ 71 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP---KLKLEIYDFDTPED----------------------KEEAE 71 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC---CceEEEEecCCccc----------------------HHHHH
Confidence 4445 6666877 999999999999999999884 35566666663322 36999
Q ss_pred hcCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCceee
Q 008336 112 LFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKIS 191 (569)
Q Consensus 112 ~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~ 191 (569)
.|+|.++||+++++ +|+.+.. +..|. .+..++..+++...... .....+ +.+.+.
T Consensus 72 ~~~V~~~Pt~~~f~-~g~~~~~------~~~G~----~~~~~l~~~i~~~~~~~---~~~~~L-----------~~~~~~ 126 (215)
T TIGR02187 72 KYGVERVPTTIILE-EGKDGGI------RYTGI----PAGYEFAALIEDIVRVS---QGEPGL-----------SEKTVE 126 (215)
T ss_pred HcCCCccCEEEEEe-CCeeeEE------EEeec----CCHHHHHHHHHHHHHhc---CCCCCC-----------CHHHHH
Confidence 99999999999994 5665420 11111 12234444443221100 000000 111011
Q ss_pred e-ccccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHH
Q 008336 192 V-SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 270 (569)
Q Consensus 192 ~-~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~ 270 (569)
. ..+++..+++.|+++||++|+.+.+.+.++.... .. +.+..+|.+. ...++
T Consensus 127 ~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~--i~~~~vD~~~---------------------~~~~~ 179 (215)
T TIGR02187 127 LLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DK--ILGEMIEANE---------------------NPDLA 179 (215)
T ss_pred HHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----Cc--eEEEEEeCCC---------------------CHHHH
Confidence 1 1235556677799999999999988777766542 12 3343444433 45778
Q ss_pred hhcccCCCceEEEEC
Q 008336 271 RYFELSTLPTLVIIG 285 (569)
Q Consensus 271 ~~f~v~~~Ptlvi~~ 285 (569)
+.|+|.++||+++.+
T Consensus 180 ~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 180 EKYGVMSVPKIVINK 194 (215)
T ss_pred HHhCCccCCEEEEec
Confidence 899999999999975
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=133.73 Aligned_cols=117 Identities=21% Similarity=0.274 Sum_probs=94.8
Q ss_pred ccccCccCCceec----CCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 13 SLLSSSARDFLIR----SNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 13 ~~~g~~~pdf~~~----~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
..+|..+|+|... -+...++|++++|| ++|+|| ++||+.|..+++.|++++++|.+.+ ++|++||.| +....
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g-~~vigIS~D-~~~~~ 79 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG-VDVYSVSTD-THFTH 79 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC-CEEEEEeCC-CHHHH
Confidence 4689999999432 34467788999999 999999 9999999999999999999998875 999999998 45667
Q ss_pred HHHHHhC----CCcccccCCchhHHHHHHhcCC----CCc--cEEEEECCCCcEEEc
Q 008336 87 KGYFSKM----PWLAVPFSDSETRDKLDELFKV----MGI--PHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~----~~~~~~~~~~~~~~~l~~~~~v----~~~--P~~~lid~~G~i~~~ 133 (569)
++|.+.. +..+..+.|. ...+++.||+ .++ |++||||++|+|++.
T Consensus 80 ~a~~~~~~~~~~l~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~ 134 (187)
T PRK10382 80 KAWHSSSETIAKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDPQGIIQAI 134 (187)
T ss_pred HHHHHhhccccCCceeEEEcC--chHHHHHcCCCcccCCceeeEEEEECCCCEEEEE
Confidence 7777653 3444445554 3589999998 356 999999999999875
|
|
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-15 Score=137.72 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=95.3
Q ss_pred cccCccCCce-ecCCCceeecCCCCCc-E-EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC--HHHHHH
Q 008336 14 LLSSSARDFL-IRSNGDQVKLDSLKGK-I-GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DEAFKG 88 (569)
Q Consensus 14 ~~g~~~pdf~-~~~~g~~v~l~~~~gk-v-lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~--~~~~~~ 88 (569)
.+|+++|+|. .+.+|+...+++++|| + |+.||++|||+|..+++.|++++++|.+.| +.|++||+|.. ...|.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g-v~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN-TELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH
Confidence 6899999994 5678988888999999 4 678899999999999999999999999886 99999999964 334666
Q ss_pred HHHhC---CCcccccCCchhHHHHHHhcCCC-------CccEEEEECCCCcEEEc
Q 008336 89 YFSKM---PWLAVPFSDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 89 ~~~~~---~~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~ 133 (569)
++++. +..+..+.|.+ ..+++.||+. ..|++||||++|+|+..
T Consensus 82 ~i~~~~~~~i~fPil~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred hHHHhcCCCCceeEEECCC--chHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 66653 44445455544 3789999984 68999999999999875
|
|
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-15 Score=127.74 Aligned_cols=104 Identities=27% Similarity=0.500 Sum_probs=88.1
Q ss_pred CCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-CHHHHHHHHHhCCCc
Q 008336 20 RDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWL 96 (569)
Q Consensus 20 pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-~~~~~~~~~~~~~~~ 96 (569)
|+| +.+.+|+.++++.++|| ++|+||++||++|+.++|.|.+++++ +.+++|+++. +.+.+++++++++..
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~------~~~i~i~~~~~~~~~~~~~~~~~~~~ 74 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD------YPVVSVALRSGDDGAVARFMQKKGYG 74 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh------CCEEEEEccCCCHHHHHHHHHHcCCC
Confidence 788 55689999999999999 99999999999999999999999876 4577788775 488999999998876
Q ss_pred ccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 97 AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
+..+.+.+ ..+++.|++.++|+++++|++| ++.
T Consensus 75 ~~~~~d~~--~~~~~~~~i~~~P~~~vid~~g-i~~ 107 (123)
T cd03011 75 FPVINDPD--GVISARWGVSVTPAIVIVDPGG-IVF 107 (123)
T ss_pred ccEEECCC--cHHHHhCCCCcccEEEEEcCCC-eEE
Confidence 55444433 4699999999999999999988 665
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.9e-15 Score=140.28 Aligned_cols=138 Identities=17% Similarity=0.137 Sum_probs=106.8
Q ss_pred hccCCcccee-c-CCC--CceecccC-CCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHH
Q 008336 334 LVSGDLDFVV-G-KNG--GKVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSF 407 (569)
Q Consensus 334 ~~~~~~~f~~-~-~~g--~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~ 407 (569)
.....|+|.+ + .+| ..++++++ +||++||+|| +.||++|..+++.|++++++++++ +++|++||+|.. ...
T Consensus 70 vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~--gv~VigIS~Ds~-~~h 146 (261)
T PTZ00137 70 VGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER--GVKVLGVSVDSP-FSH 146 (261)
T ss_pred CCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCH-HHH
Confidence 3445689986 4 344 46899998 8888888888 899999999999999999999876 799999999963 333
Q ss_pred HHHHh----cC--CCcccccCchhhHHHHHhcCCC-----CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHH
Q 008336 408 DEFFK----GM--PWLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 476 (569)
Q Consensus 408 ~~~~~----~~--~~~~~~~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~ 476 (569)
++|.+ +. .-+.||++.|.+..+++.||+. ..|++||||++|+|++...... -.++.+++
T Consensus 147 ~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~----------~~gr~v~e 216 (261)
T PTZ00137 147 KAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDL----------GLGRSVDE 216 (261)
T ss_pred HHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCC----------CCCCCHHH
Confidence 44433 22 2377999999999999999985 5899999999999999853221 23346777
Q ss_pred HHHHhhhh
Q 008336 477 IDGQYNEM 484 (569)
Q Consensus 477 l~~~l~~l 484 (569)
+.+.|+.+
T Consensus 217 iLr~l~al 224 (261)
T PTZ00137 217 TLRLFDAV 224 (261)
T ss_pred HHHHHHHh
Confidence 77777654
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-15 Score=137.31 Aligned_cols=138 Identities=16% Similarity=0.215 Sum_probs=103.9
Q ss_pred ccCCcccee-cC--CCCc---eecccC-CCCEEEEEEecC-CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCh--
Q 008336 335 VSGDLDFVV-GK--NGGK---VPVSDL-AGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ-- 404 (569)
Q Consensus 335 ~~~~~~f~~-~~--~g~~---v~l~~~-~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~-- 404 (569)
....|+|.+ +. +|+. ++++++ +||++||+||+. ||+.|..+++.|++++++|+++ +++|++||+|...
T Consensus 5 g~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~--g~~vigvS~D~~~~~ 82 (200)
T PRK15000 5 TRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR--GVEVVGVSFDSEFVH 82 (200)
T ss_pred CCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHH
Confidence 345689987 43 3454 345554 799999999985 9999999999999999999876 7999999999542
Q ss_pred hHHHH-HHhcCC--CcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHH
Q 008336 405 TSFDE-FFKGMP--WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 475 (569)
Q Consensus 405 ~~~~~-~~~~~~--~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~ 475 (569)
..|.+ +.+..+ -+.||++.|....+++.|++. ++|++||||++|+|++...+.+ -.+++++
T Consensus 83 ~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~----------~~gr~~~ 152 (200)
T PRK15000 83 NAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDL----------PLGRNID 152 (200)
T ss_pred HHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCC----------CCCCCHH
Confidence 22332 233333 268999999999999999998 7999999999999999854321 2234677
Q ss_pred HHHHHhhhh
Q 008336 476 EIDGQYNEM 484 (569)
Q Consensus 476 ~l~~~l~~l 484 (569)
++.+.++.+
T Consensus 153 eilr~l~al 161 (200)
T PRK15000 153 EMLRMVDAL 161 (200)
T ss_pred HHHHHHHHh
Confidence 777777654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=167.60 Aligned_cols=117 Identities=26% Similarity=0.355 Sum_probs=100.5
Q ss_pred cCCcccee-c--CCCCceec-ccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC---CC--ChhH
Q 008336 336 SGDLDFVV-G--KNGGKVPV-SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS---DR--DQTS 406 (569)
Q Consensus 336 ~~~~~f~~-~--~~g~~v~l-~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~---d~--~~~~ 406 (569)
...|+|.. + .+|+++++ ++++||+|||+|||+||++|+.++|.|++++++|+++ ++.||+|+. |. +.+.
T Consensus 395 ~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~--~~~vvgV~~~~~D~~~~~~~ 472 (1057)
T PLN02919 395 TKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ--PFTVVGVHSAKFDNEKDLEA 472 (1057)
T ss_pred CcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC--CeEEEEEecccccccccHHH
Confidence 34578865 3 68889988 5899999999999999999999999999999999865 699999974 32 4567
Q ss_pred HHHHHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccc
Q 008336 407 FDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 407 ~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
+++++.+++ +.+|+..|....+.+.|+|.++|+++|||++|+++.+..
T Consensus 473 ~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~ 520 (1057)
T PLN02919 473 IRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLS 520 (1057)
T ss_pred HHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEe
Confidence 888988887 678888888889999999999999999999999998843
|
|
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=129.08 Aligned_cols=113 Identities=25% Similarity=0.334 Sum_probs=95.9
Q ss_pred ccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhC-
Q 008336 18 SARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM- 93 (569)
Q Consensus 18 ~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~- 93 (569)
.+|+| +.+.+|+.+++++++|| ++|+|| ++||++|...+|.|++++++|+.. ++.+++|+.| +.+.+++|++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d-~~~~~~~~~~~~~ 78 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVD-SPFSHKAWAEKEG 78 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCC-CHHHHHHHHhccc
Confidence 37999 55789999999999999 999999 789999999999999999999766 4999999987 567889999988
Q ss_pred CCcccccCCchhHHHHHHhcCCCCcc---------EEEEECCCCcEEEcC
Q 008336 94 PWLAVPFSDSETRDKLDELFKVMGIP---------HLVILDENGKVLSDG 134 (569)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~~ 134 (569)
+..+..+.|... .+.+.|++...| +++|+|++|+|++..
T Consensus 79 ~~~~~~l~D~~~--~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~ 126 (140)
T cd02971 79 GLNFPLLSDPDG--EFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE 126 (140)
T ss_pred CCCceEEECCCh--HHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence 665555555443 788999988665 899999999999853
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-14 Score=147.06 Aligned_cols=184 Identities=22% Similarity=0.354 Sum_probs=129.1
Q ss_pred cCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhccc
Q 008336 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (569)
Q Consensus 196 ~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v 275 (569)
.+..+++.|+++||++|..+.|.+.++...++++ +.+..+|.++ ++.+++.|+|
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-----~~~~~vd~~~---------------------~~~~~~~y~i 99 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-----VKIGAVDCDE---------------------HKDLCEKYGI 99 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-----eEEEEeCchh---------------------hHHHHHhcCC
Confidence 5578899999999999999999999999999874 7777888776 7899999999
Q ss_pred CCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCcccee-cCCCCceeccc
Q 008336 276 STLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVV-GKNGGKVPVSD 354 (569)
Q Consensus 276 ~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~~g~~v~l~~ 354 (569)
.++||+.++.++.+... ..+ +-+.+.+.++............... .-+.+ ..+...+....
T Consensus 100 ~gfPtl~~f~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~l~~~~~~~~~~~~ 161 (383)
T KOG0191|consen 100 QGFPTLKVFRPGKKPID--------YSG----PRNAESLAEFLIKELEPSVKKLVEG------EVFELTKDNFDETVKDS 161 (383)
T ss_pred ccCcEEEEEcCCCceee--------ccC----cccHHHHHHHHHHhhccccccccCC------ceEEccccchhhhhhcc
Confidence 99999999987722211 111 2345555555554332111111110 01122 22322222222
Q ss_pred CCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 355 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 355 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
...++|.||+|||++|+.++|.+.++...++. ...+.+..++.+.. ..++..++
T Consensus 162 --~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~~~-----------------------~~~~~~~~ 215 (383)
T KOG0191|consen 162 --DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDATVH-----------------------KSLASRLE 215 (383)
T ss_pred --CcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccchH-----------------------HHHhhhhc
Confidence 56899999999999999999999999998874 23567766665522 35889999
Q ss_pred CCCccEEEEECCCCc
Q 008336 435 VSGIPMLVAIGPSGR 449 (569)
Q Consensus 435 v~~~Pt~~lid~~G~ 449 (569)
|+++||+.++-++..
T Consensus 216 v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 216 VRGYPTLKLFPPGEE 230 (383)
T ss_pred ccCCceEEEecCCCc
Confidence 999999999965555
|
|
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=137.36 Aligned_cols=138 Identities=12% Similarity=0.200 Sum_probs=107.5
Q ss_pred ccCCcccee-cCCCCceec-ccCCCCEEEE-EEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChh--HHHH
Q 008336 335 VSGDLDFVV-GKNGGKVPV-SDLAGKTILL-YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT--SFDE 409 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~v~l-~~~~gk~vll-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~--~~~~ 409 (569)
....|+|.+ +.+|+ +.+ ++++||+++| +||+.||+.|..+++.|++++++|+++ +++|++||+|.... .|.+
T Consensus 10 G~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~--g~~VigvS~Ds~~~h~aw~~ 86 (215)
T PRK13191 10 GEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL--NTELIGLSVDSNISHIEWVM 86 (215)
T ss_pred CCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHh
Confidence 345699988 77776 555 5589997665 778999999999999999999999876 69999999997533 4555
Q ss_pred HHhcC-C-CcccccCchhhHHHHHhcCCC-------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHH
Q 008336 410 FFKGM-P-WLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 480 (569)
Q Consensus 410 ~~~~~-~-~~~~~~~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~ 480 (569)
++++. + -+.||++.|.+..+++.||+. ..|++||||++|+|++.....+ ..+++++++.+.
T Consensus 87 ~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~----------~~gr~~~eilr~ 156 (215)
T PRK13191 87 WIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPM----------EIGRNIDEILRA 156 (215)
T ss_pred hHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCC----------CCCCCHHHHHHH
Confidence 55532 2 377999999999999999974 4799999999999999853221 234577888888
Q ss_pred hhhhh
Q 008336 481 YNEMA 485 (569)
Q Consensus 481 l~~l~ 485 (569)
|+.+.
T Consensus 157 l~alq 161 (215)
T PRK13191 157 IRALQ 161 (215)
T ss_pred HHHhh
Confidence 77653
|
|
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=127.96 Aligned_cols=98 Identities=20% Similarity=0.413 Sum_probs=78.0
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.||++||+||++||++|+.+.|.|.++++++.++ +.++.|++|.+.. ..+++.|+|
T Consensus 19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~---------------------~~~~~~~~V 74 (142)
T cd02950 19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKW---------------------LPEIDRYRV 74 (142)
T ss_pred CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCccc---------------------HHHHHHcCC
Confidence 5899999999999999999999999999998754 7899998886421 246789999
Q ss_pred CCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCcc
Q 008336 436 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN 491 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~~ 491 (569)
.++|+++||+++|+++.+..|. . ..++|.+.|++++++.|-.
T Consensus 75 ~~iPt~v~~~~~G~~v~~~~G~-----------~---~~~~l~~~l~~l~~~~~~~ 116 (142)
T cd02950 75 DGIPHFVFLDREGNEEGQSIGL-----------Q---PKQVLAQNLDALVAGEPLP 116 (142)
T ss_pred CCCCEEEEECCCCCEEEEEeCC-----------C---CHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999884321 1 1245677777777666543
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=135.95 Aligned_cols=135 Identities=16% Similarity=0.210 Sum_probs=102.4
Q ss_pred CCcccee-cCCCCceecccCCC-CEE-EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHh-
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAG-KTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK- 412 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~g-k~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~- 412 (569)
..|+|.+ +.+| .+++++++| |++ |+.||++|||.|..+++.|++++++++++ +++|++||+|.. ....+|.+
T Consensus 4 ~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~--gv~vigvS~D~~-~~~~~~~~~ 79 (203)
T cd03016 4 TAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKR--NVKLIGLSVDSV-ESHIKWIED 79 (203)
T ss_pred CCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEECCCH-HHHHHHHhh
Confidence 4589988 6666 689999998 654 55788999999999999999999999876 799999999964 33333332
Q ss_pred --cC--CCcccccCchhhHHHHHhcCCC----C----ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHH
Q 008336 413 --GM--PWLALPFGDARKASLSRKFKVS----G----IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 480 (569)
Q Consensus 413 --~~--~~~~~~~~~d~~~~l~~~~~v~----~----~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~ 480 (569)
.+ .-+.||++.|.+..+++.|++. + .|++||||++|+|+....... ..++..+++.+.
T Consensus 80 i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~----------~~gr~~~ell~~ 149 (203)
T cd03016 80 IEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPA----------TTGRNFDEILRV 149 (203)
T ss_pred HHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCC----------CCCCCHHHHHHH
Confidence 21 2377899999999999999986 2 457999999999998853221 123456777777
Q ss_pred hhhhh
Q 008336 481 YNEMA 485 (569)
Q Consensus 481 l~~l~ 485 (569)
|+++.
T Consensus 150 l~~lq 154 (203)
T cd03016 150 VDALQ 154 (203)
T ss_pred HHHHh
Confidence 76653
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=131.30 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=86.1
Q ss_pred cccCccCCceecC-----------CCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEE------E
Q 008336 14 LLSSSARDFLIRS-----------NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV------I 75 (569)
Q Consensus 14 ~~g~~~pdf~~~~-----------~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~v------v 75 (569)
.+|++.|...++. +.+.++.++++|| ++|+|||+||++|+.++|.+.++.++ ++.+ +
T Consensus 24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~ 98 (184)
T TIGR01626 24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTT 98 (184)
T ss_pred hcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceE
Confidence 4689998885532 3356788899999 99999999999999999999999443 3778 9
Q ss_pred EEeCCCCHHHHHHHHH----hCC--Cccc-ccCCchhHHHHHHhcCCCCccEE-EEECCCCcEEEc
Q 008336 76 FVSGDEDDEAFKGYFS----KMP--WLAV-PFSDSETRDKLDELFKVMGIPHL-VILDENGKVLSD 133 (569)
Q Consensus 76 ~v~~d~~~~~~~~~~~----~~~--~~~~-~~~~~~~~~~l~~~~~v~~~P~~-~lid~~G~i~~~ 133 (569)
+|+.|+.......|++ +.. .++. .+.|.. ..+...|++.++|++ |+||++|+|+..
T Consensus 99 ~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~--g~v~~~~gv~~~P~T~fVIDk~GkVv~~ 162 (184)
T TIGR01626 99 IINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK--GAVKNAWQLNSEDSAIIVLDKTGKVKFV 162 (184)
T ss_pred EEECccchhhHHHHHHHHHHHhcccCCcceEEECCc--chHHHhcCCCCCCceEEEECCCCcEEEE
Confidence 9999986655555544 443 3322 234443 357789999999988 899999999975
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=129.72 Aligned_cols=112 Identities=21% Similarity=0.404 Sum_probs=91.7
Q ss_pred ccCCc-eecCCCceeecCCCC-Cc-E-EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhC
Q 008336 18 SARDF-LIRSNGDQVKLDSLK-GK-I-GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (569)
Q Consensus 18 ~~pdf-~~~~~g~~v~l~~~~-gk-v-lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~ 93 (569)
.+|+| +.+.+|+.++++++. ++ + |++||++||++|+.++|.|+++++++.+.+ +.+++|+.+.. +....|.++.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~-v~vv~V~~~~~-~~~~~~~~~~ 78 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG-VELVAVGPESP-EKLEAFDKGK 78 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC-eEEEEEeCCCH-HHHHHHHHhc
Confidence 37999 456899999999875 45 5 454579999999999999999999998775 99999998854 4556788888
Q ss_pred CCcccccCCchhHHHHHHhcCCC-----------------------------CccEEEEECCCCcEEEc
Q 008336 94 PWLAVPFSDSETRDKLDELFKVM-----------------------------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~-----------------------------~~P~~~lid~~G~i~~~ 133 (569)
++.+..+.|.+ ..+.+.|++. .+|.++|||++|+|+..
T Consensus 79 ~~~~p~~~D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~ 145 (149)
T cd02970 79 FLPFPVYADPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFA 145 (149)
T ss_pred CCCCeEEECCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEE
Confidence 87766666655 3688999984 79999999999999874
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-14 Score=133.89 Aligned_cols=116 Identities=21% Similarity=0.301 Sum_probs=90.8
Q ss_pred cccCccCCcee-cCCCceeecCCCCCc-EEE-EEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHH--HH-H
Q 008336 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE--AF-K 87 (569)
Q Consensus 14 ~~g~~~pdf~~-~~~g~~v~l~~~~gk-vlv-~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~--~~-~ 87 (569)
.+|+++|+|.+ +..| .+++++++|| ++| +||++||++|..+++.|++++++|++.+ +.|++||+|.... .| +
T Consensus 3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~-~~vi~vS~D~~~~~~~w~~ 80 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG-VELVGLSVDSIYSHIAWLR 80 (202)
T ss_pred CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH
Confidence 47999999955 4556 7999999999 665 6899999999999999999999999875 9999999995422 22 3
Q ss_pred HHHHhCC--CcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 88 GYFSKMP--WLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
++.++.+ +.+..+.|.+ ..+++.||+. .+|++||||++|+|+..
T Consensus 81 ~~~~~~g~~~~fPll~D~~--~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~ 132 (202)
T PRK13190 81 DIEERFGIKIPFPVIADID--KELAREYNLIDENSGATVRGVFIIDPNQIVRWM 132 (202)
T ss_pred hHHHhcCCCceEEEEECCC--hHHHHHcCCccccCCcEEeEEEEECCCCEEEEE
Confidence 3344454 2344455544 4789999984 58999999999999864
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=166.88 Aligned_cols=117 Identities=23% Similarity=0.309 Sum_probs=100.3
Q ss_pred cccCccCCceec---CCCceeec-CCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeC---C--CCH
Q 008336 14 LLSSSARDFLIR---SNGDQVKL-DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG---D--EDD 83 (569)
Q Consensus 14 ~~g~~~pdf~~~---~~g~~v~l-~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~---d--~~~ 83 (569)
..|.++|+|... .+|+++++ ++++|| |||+|||+||++|+.++|.|++++++|++++ +.|++|+. | .+.
T Consensus 392 ~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~-~~vvgV~~~~~D~~~~~ 470 (1057)
T PLN02919 392 KTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP-FTVVGVHSAKFDNEKDL 470 (1057)
T ss_pred ccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC-eEEEEEecccccccccH
Confidence 458999999442 68999998 689999 9999999999999999999999999998775 99999974 3 356
Q ss_pred HHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 84 EAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+.+++++.++++.+..+.+... .+.+.|++.++|+++|||++|+++.+
T Consensus 471 ~~~~~~~~~~~i~~pvv~D~~~--~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 471 EAIRNAVLRYNISHPVVNDGDM--YLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred HHHHHHHHHhCCCccEEECCch--HHHHhcCCCccceEEEECCCCeEEEE
Confidence 7899999999887766655443 68899999999999999999999874
|
|
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=133.47 Aligned_cols=137 Identities=20% Similarity=0.270 Sum_probs=105.9
Q ss_pred ccCCcccee-----cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHH
Q 008336 335 VSGDLDFVV-----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 408 (569)
Q Consensus 335 ~~~~~~f~~-----~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~ 408 (569)
....|+|.+ +.+|+++++++++||+++|+|| +.||++|..+++.|.+++++++++ +++|++||+|.... ..
T Consensus 9 G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~d~~~~-~~ 85 (199)
T PTZ00253 9 NHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSMDSEYA-HL 85 (199)
T ss_pred CCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHH-HH
Confidence 345688873 4567899999999999999999 488999999999999999999876 79999999986533 22
Q ss_pred HHHh--c----CCCcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHH
Q 008336 409 EFFK--G----MPWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 476 (569)
Q Consensus 409 ~~~~--~----~~~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~ 476 (569)
.+.. + ..-+.||++.|.++++++.||+. .+|+.||||++|+|+...... .+ .++++++
T Consensus 86 ~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~---------~~-~~r~~~e 155 (199)
T PTZ00253 86 QWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVND---------MP-VGRNVEE 155 (199)
T ss_pred HHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecC---------CC-CCCCHHH
Confidence 2221 1 22378999999999999999986 469999999999999875321 12 3456666
Q ss_pred HHHHhhhh
Q 008336 477 IDGQYNEM 484 (569)
Q Consensus 477 l~~~l~~l 484 (569)
+.+.|+.+
T Consensus 156 ~l~~l~a~ 163 (199)
T PTZ00253 156 VLRLLEAF 163 (199)
T ss_pred HHHHHHhh
Confidence 66666544
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.7e-14 Score=130.66 Aligned_cols=117 Identities=21% Similarity=0.322 Sum_probs=89.4
Q ss_pred ccccCccCCceec-C--CCcee---ecCCC-CCc-EEEEEecC-CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCH
Q 008336 13 SLLSSSARDFLIR-S--NGDQV---KLDSL-KGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83 (569)
Q Consensus 13 ~~~g~~~pdf~~~-~--~g~~v---~l~~~-~gk-vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~ 83 (569)
.++|.++|+|.+. . +|+.+ +++++ +|| ++|+||+. ||+.|..+++.|++++++|++.+ ++|++||+|..
T Consensus 2 ~~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g-~~vigvS~D~~- 79 (200)
T PRK15000 2 VLVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG-VEVVGVSFDSE- 79 (200)
T ss_pred CcCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCCH-
Confidence 4589999999543 3 45544 45554 799 99999994 99999999999999999999875 99999999953
Q ss_pred HHHHHH----HHhCCC---cccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 84 EAFKGY----FSKMPW---LAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 84 ~~~~~~----~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
...+.+ .++.+. .+..+.|.+ ..+++.||+. ++|++||||++|+|+..
T Consensus 80 ~~~~~w~~~~~~~~g~~~i~fpllsD~~--~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~ 140 (200)
T PRK15000 80 FVHNAWRNTPVDKGGIGPVKYAMVADVK--REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ 140 (200)
T ss_pred HHHHHHHhhHHHhCCccccCceEEECCC--cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence 333333 333432 334445544 4799999997 79999999999999874
|
|
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.5e-14 Score=131.18 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=88.4
Q ss_pred ccCccCCcee-cCCCceeecCCCCC-c--EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 15 LSSSARDFLI-RSNGDQVKLDSLKG-K--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 15 ~g~~~pdf~~-~~~g~~v~l~~~~g-k--vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
+|+++|+|.+ +.+| .+++++++| | +|+.||++|||.|..+++.|++++++|++.+ ++|++|++|.. ....++.
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g-v~vigvS~D~~-~~~~~~~ 77 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN-VKLIGLSVDSV-ESHIKWI 77 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC-CEEEEEECCCH-HHHHHHH
Confidence 5899999954 4566 599999988 6 4557899999999999999999999999875 99999999953 3333343
Q ss_pred Hh------CCCcccccCCchhHHHHHHhcCCC----C----ccEEEEECCCCcEEEc
Q 008336 91 SK------MPWLAVPFSDSETRDKLDELFKVM----G----IPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~------~~~~~~~~~~~~~~~~l~~~~~v~----~----~P~~~lid~~G~i~~~ 133 (569)
+. .++.+..+.|.+ ..+++.||+. + .|++||||++|+|+..
T Consensus 78 ~~i~~~~~~~~~fpil~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~ 132 (203)
T cd03016 78 EDIEEYTGVEIPFPIIADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI 132 (203)
T ss_pred hhHHHhcCCCCceeEEECch--HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence 32 455555555544 4789999975 2 4579999999999874
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-14 Score=118.26 Aligned_cols=74 Identities=18% Similarity=0.424 Sum_probs=63.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
+||+|||+|||+||++|+.+.|.|+++++++ . ++.++.|+.|.+.. ...+++.|+|
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~---~v~~~~vd~d~~~~--------------------~~~l~~~~~V 69 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N---DVVFLLVNGDENDS--------------------TMELCRREKI 69 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C---CCEEEEEECCCChH--------------------HHHHHHHcCC
Confidence 5899999999999999999999999999988 3 47888888876531 1358899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++ ++|+++.+.
T Consensus 70 ~~~Pt~~~~-~~G~~v~~~ 87 (103)
T cd02985 70 IEVPHFLFY-KDGEKIHEE 87 (103)
T ss_pred CcCCEEEEE-eCCeEEEEE
Confidence 999999888 899998874
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.6e-14 Score=117.29 Aligned_cols=71 Identities=11% Similarity=0.306 Sum_probs=64.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
++++||+|||+||+||+.+.|.|.++++++++. +.++.|++|..+ ++++.|+|+
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~~-----------------------~la~~~~V~ 67 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEVP-----------------------DFNKMYELY 67 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCCH-----------------------HHHHHcCCC
Confidence 689999999999999999999999999999754 788889988776 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+.+.+.
T Consensus 68 ~iPTf~~f-k~G~~v~~~ 84 (114)
T cd02954 68 DPPTVMFF-FRNKHMKID 84 (114)
T ss_pred CCCEEEEE-ECCEEEEEE
Confidence 99999999 899999885
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=130.15 Aligned_cols=117 Identities=20% Similarity=0.290 Sum_probs=91.7
Q ss_pred ccccCccCCce-ecCCCceeec-CCCCCc-EEE-EEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHH--HH
Q 008336 13 SLLSSSARDFL-IRSNGDQVKL-DSLKGK-IGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE--AF 86 (569)
Q Consensus 13 ~~~g~~~pdf~-~~~~g~~v~l-~~~~gk-vlv-~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~--~~ 86 (569)
..+|+++|+|. .+.+|+ +.+ ++++|| ++| +||++||+.|..+++.|++++++|++.+ ++|++||+|.... .|
T Consensus 7 ~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g-~~VigvS~Ds~~~h~aw 84 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN-TELIGLSVDSNISHIEW 84 (215)
T ss_pred ccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHH
Confidence 35899999995 456786 556 458999 554 7899999999999999999999999885 9999999996543 45
Q ss_pred HHHHHh---CCCcccccCCchhHHHHHHhcCCC-------CccEEEEECCCCcEEEc
Q 008336 87 KGYFSK---MPWLAVPFSDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~ 133 (569)
.+++++ .+..+..+.|.+ ..+++.||+. ..|++||||++|+|+..
T Consensus 85 ~~~~~~~~~~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 139 (215)
T PRK13191 85 VMWIEKNLKVEVPFPIIADPM--GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI 139 (215)
T ss_pred HhhHHHhcCCCCceEEEECCc--hHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence 555654 244455555554 4799999974 47999999999999874
|
|
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=132.53 Aligned_cols=117 Identities=22% Similarity=0.197 Sum_probs=92.2
Q ss_pred ccccCccCCcee-c-CCC--ceeecCCC-CCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHH
Q 008336 13 SLLSSSARDFLI-R-SNG--DQVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85 (569)
Q Consensus 13 ~~~g~~~pdf~~-~-~~g--~~v~l~~~-~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~ 85 (569)
.++|+.+|+|.+ + .+| +.++++++ +|| ++|+|| ++||++|..+++.|++++++|++.| ++|++||+|. ...
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g-v~VigIS~Ds-~~~ 145 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG-VKVLGVSVDS-PFS 145 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCC-HHH
Confidence 378999999954 3 345 46899998 888 777776 9999999999999999999999886 9999999986 444
Q ss_pred HHHHHH----h---CCCcccccCCchhHHHHHHhcCCC-----CccEEEEECCCCcEEEc
Q 008336 86 FKGYFS----K---MPWLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~~----~---~~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~ 133 (569)
.++|.+ + .+..+..+.|.+ ..+++.||+. ..|++||||++|+|++.
T Consensus 146 h~aw~~~~~~~~g~~~l~fPlLsD~~--~~iakayGv~~~~g~a~R~tFIID~dG~I~~~ 203 (261)
T PTZ00137 146 HKAWKELDVRQGGVSPLKFPLFSDIS--REVSKSFGLLRDEGFSHRASVLVDKAGVVKHV 203 (261)
T ss_pred HHHHHhhhhhhccccCcceEEEEcCC--hHHHHHcCCCCcCCceecEEEEECCCCEEEEE
Confidence 444443 2 234444455554 5799999985 58999999999999874
|
|
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=131.52 Aligned_cols=137 Identities=17% Similarity=0.237 Sum_probs=102.4
Q ss_pred ccCCcccee-cCCCCceeccc-CCCCEEE-EEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 335 VSGDLDFVV-GKNGGKVPVSD-LAGKTIL-LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~v~l~~-~~gk~vl-l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
....|+|.+ +..| .+++++ ++||+++ ++||+.||+.|..+++.|++++++|+++ +++|++||+|... ...+|.
T Consensus 12 G~~aPdF~~~~~~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~--~v~VigvS~D~~~-~h~aw~ 87 (222)
T PRK13189 12 GDKFPEFEVKTTHG-PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL--NTELIGLSIDQVF-SHIKWV 87 (222)
T ss_pred CCcCCCcEeEcCCC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHH-HHHHHH
Confidence 345699988 6666 477766 5899555 5778999999999999999999999876 7999999999653 233333
Q ss_pred h----cCC-CcccccCchhhHHHHHhcCCC-------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHH
Q 008336 412 K----GMP-WLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 479 (569)
Q Consensus 412 ~----~~~-~~~~~~~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~ 479 (569)
+ ..+ -+.||++.|.+..+++.||+. ..|++||||++|+|++...... ..++.++++.+
T Consensus 88 ~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~----------~~gr~~~eilr 157 (222)
T PRK13189 88 EWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQ----------EVGRNMDEILR 157 (222)
T ss_pred HhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCC----------CCCCCHHHHHH
Confidence 2 222 367899999999999999975 5799999999999998753221 12345566666
Q ss_pred Hhhhhh
Q 008336 480 QYNEMA 485 (569)
Q Consensus 480 ~l~~l~ 485 (569)
.|+.+.
T Consensus 158 ~l~alq 163 (222)
T PRK13189 158 LVKALQ 163 (222)
T ss_pred HHHHhh
Confidence 666553
|
|
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.6e-14 Score=125.98 Aligned_cols=98 Identities=23% Similarity=0.370 Sum_probs=75.5
Q ss_pred cCccCCceecCCCceeecCCCCCcEEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCC
Q 008336 16 SSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPW 95 (569)
Q Consensus 16 g~~~pdf~~~~~g~~v~l~~~~gkvlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~ 95 (569)
..+.|+|.+ .+|+.+++++++ +|+||++|||+|++++|.|+++++++ + +.|++|++|...+ .
T Consensus 52 ~~~~~~f~l-~dG~~v~lsd~~---lV~FwaswCp~C~~e~P~L~~l~~~~---g-~~Vi~Vs~D~~~~----------~ 113 (181)
T PRK13728 52 KPAPRWFRL-SNGRQVNLADWK---VVLFMQGHCPYCHQFDPVLKQLAQQY---G-FSVFPYTLDGQGD----------T 113 (181)
T ss_pred CCCCCccCC-CCCCEeehhHce---EEEEECCCCHhHHHHHHHHHHHHHHc---C-CEEEEEEeCCCCC----------C
Confidence 345567733 499999999998 77899999999999999999999997 2 8999999986532 1
Q ss_pred cccccCCchhHHHHHHhcCC--CCccEEEEECCCCcEEE
Q 008336 96 LAVPFSDSETRDKLDELFKV--MGIPHLVILDENGKVLS 132 (569)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~v--~~~P~~~lid~~G~i~~ 132 (569)
.+..+.+.. ...+...|++ .++|++||||++|+++.
T Consensus 114 ~fPv~~dd~-~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 114 AFPEALPAP-PDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred CCceEecCc-hhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 222223211 2357778995 69999999999999864
|
|
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-14 Score=124.43 Aligned_cols=87 Identities=21% Similarity=0.293 Sum_probs=63.5
Q ss_pred CCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchh
Q 008336 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDAR 425 (569)
Q Consensus 346 ~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~ 425 (569)
.|+.+.+++ ..+|+|||+||++|++++|.|+++++++ ++.|++|++|.... ..+|...+.
T Consensus 43 ~G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~-----~~~Vi~Vs~d~~~~-----------~~fp~~~~~ 102 (153)
T TIGR02738 43 QGRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQF-----GLPVYAFSLDGQGL-----------TGFPDPLPA 102 (153)
T ss_pred cchhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHc-----CCcEEEEEeCCCcc-----------cccccccCC
Confidence 366666544 5599999999999999999999999887 27899999986531 123332221
Q ss_pred hHHH-HHhc---CCCCccEEEEECCCCcEEE
Q 008336 426 KASL-SRKF---KVSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 426 ~~~l-~~~~---~v~~~Pt~~lid~~G~i~~ 452 (569)
.... ...| ++.++|++|+||++|+++.
T Consensus 103 ~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 103 TPEVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred chHHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 2223 3445 8899999999999988654
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-13 Score=129.02 Aligned_cols=115 Identities=17% Similarity=0.269 Sum_probs=87.8
Q ss_pred cccCccCCcee-cCCCceeecCC-CCCc-EE-EEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 14 LLSSSARDFLI-RSNGDQVKLDS-LKGK-IG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 14 ~~g~~~pdf~~-~~~g~~v~l~~-~~gk-vl-v~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
.+|+++|+|.. +..|+ +++++ ++|| ++ ++||++||+.|..+++.|++++++|++.+ ++|++||+|... ...+|
T Consensus 10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~-v~VigvS~D~~~-~h~aw 86 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN-TELIGLSIDQVF-SHIKW 86 (222)
T ss_pred cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEECCCHH-HHHHH
Confidence 57999999955 46674 77776 5999 54 57789999999999999999999998875 999999999543 33333
Q ss_pred HH---h-C--CCcccccCCchhHHHHHHhcCCC-------CccEEEEECCCCcEEEc
Q 008336 90 FS---K-M--PWLAVPFSDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~---~-~--~~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~ 133 (569)
++ + . +..+..+.|.+ ..+++.||+. .+|++||||++|+|+..
T Consensus 87 ~~~~~~~~g~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 141 (222)
T PRK13189 87 VEWIKEKLGVEIEFPIIADDR--GEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI 141 (222)
T ss_pred HHhHHHhcCcCcceeEEEcCc--cHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence 33 2 2 23344445544 4788999975 57999999999999874
|
|
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=126.22 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=69.3
Q ss_pred Ccccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhHHHH
Q 008336 338 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSFDE 409 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~~~~ 409 (569)
..+|.+ +.+|+.++|++++||++||.|||+||++|+ +++.|++++++|+++ ++.|++|+++ .+.+++++
T Consensus 5 ~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~--gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 5 ILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ--GFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred ccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC--CeEEEEeeccccccCCCCCHHHHHH
Confidence 357777 899999999999999999999999999996 699999999999876 7999999986 35578889
Q ss_pred HHh-cCCCcccccC
Q 008336 410 FFK-GMPWLALPFG 422 (569)
Q Consensus 410 ~~~-~~~~~~~~~~ 422 (569)
|++ +++ +.||+.
T Consensus 82 f~~~~~g-~~Fpv~ 94 (183)
T PRK10606 82 YCRTTWG-VTFPMF 94 (183)
T ss_pred HHHHccC-CCceeE
Confidence 987 555 567765
|
|
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-13 Score=112.53 Aligned_cols=77 Identities=12% Similarity=0.267 Sum_probs=63.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+|||+||+||+.+.|.+.++++++.. ...++.|++|.++. + ..++++.|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~------------------d-~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDV------------------D-REKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCcccc------------------c-cHHHHHHCCC
Confidence 378999999999999999999999999887543 26788888886521 0 1258999999
Q ss_pred CCccEEEEECCCCcEEEccc
Q 008336 436 SGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~~ 455 (569)
.++||++++ ++|+.+.+..
T Consensus 71 ~~iPT~i~f-k~G~~v~~~~ 89 (103)
T PHA02278 71 MSTPVLIGY-KDGQLVKKYE 89 (103)
T ss_pred ccccEEEEE-ECCEEEEEEe
Confidence 999999999 7899998853
|
|
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-13 Score=113.07 Aligned_cols=71 Identities=13% Similarity=0.313 Sum_probs=61.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+|||+||++|+.+.|.|.++++++++. .+.++.++.| .. ++++.|+|+
T Consensus 17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~--~~~~~~vd~d-~~-----------------------~~~~~~~v~ 70 (102)
T cd02948 17 KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD--LLHFATAEAD-TI-----------------------DTLKRYRGK 70 (102)
T ss_pred CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC--cEEEEEEeCC-CH-----------------------HHHHHcCCC
Confidence 789999999999999999999999999988743 4677888877 33 378999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+++.+.
T Consensus 71 ~~Pt~~~~-~~g~~~~~~ 87 (102)
T cd02948 71 CEPTFLFY-KNGELVAVI 87 (102)
T ss_pred cCcEEEEE-ECCEEEEEE
Confidence 99999999 689988874
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-13 Score=125.03 Aligned_cols=116 Identities=17% Similarity=0.242 Sum_probs=90.3
Q ss_pred cccCccCCcee-c----CCCceeecCCCCCc-EEEEEec-CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 14 LLSSSARDFLI-R----SNGDQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 14 ~~g~~~pdf~~-~----~~g~~v~l~~~~gk-vlv~F~a-~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
.+|+++|+|.. + .+|+.+++++++|| ++|+||+ .||++|..+++.|.+++++|.+.+ ++|++||+|.... .
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g-~~vv~IS~d~~~~-~ 84 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN-CEVLACSMDSEYA-H 84 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC-CEEEEEeCCCHHH-H
Confidence 47999999953 2 36689999999999 9999995 889999999999999999999885 9999999996543 2
Q ss_pred HHHHHh------C-CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 87 KGYFSK------M-PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~------~-~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
.++... . .+.+..+.|.+ ..+++.||+. .+|++||||++|+|+..
T Consensus 85 ~~~~~~~~~~~~~~~~~fpll~D~~--~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~ 142 (199)
T PTZ00253 85 LQWTLQERKKGGLGTMAIPMLADKT--KSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQI 142 (199)
T ss_pred HHHHhChHhhCCccccccceEECcH--hHHHHHcCCcccCCCceEEEEEEECCCCEEEEE
Confidence 333211 1 13333344443 5799999985 46999999999999874
|
|
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-13 Score=112.97 Aligned_cols=74 Identities=24% Similarity=0.521 Sum_probs=62.1
Q ss_pred CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 35 ~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
+.+|+ |+|+|||+||++|+.++|.|.++++++. ++.++.|++|.+.. ...+++.|
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~d~~~~---------------------~~~l~~~~ 67 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN---DVVFLLVNGDENDS---------------------TMELCRRE 67 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CCEEEEEECCCChH---------------------HHHHHHHc
Confidence 34688 9999999999999999999999999982 48899999886532 12588999
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 114 KVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 114 ~v~~~P~~~lid~~G~i~~~ 133 (569)
+|.++||++++ ++|+++.+
T Consensus 68 ~V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 68 KIIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred CCCcCCEEEEE-eCCeEEEE
Confidence 99999998888 88988753
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-13 Score=116.22 Aligned_cols=71 Identities=20% Similarity=0.563 Sum_probs=65.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+.||+|+|||+||+||+.+.|.|+++..+++++ +.+.-|++|... +++..|+|.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~~-----------------------ela~~Y~I~ 114 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEHP-----------------------ELAEDYEIS 114 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEcccccc-----------------------chHhhccee
Confidence 689999999999999999999999999999876 999999999776 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|..+.+-
T Consensus 115 avPtvlvf-knGe~~d~~ 131 (150)
T KOG0910|consen 115 AVPTVLVF-KNGEKVDRF 131 (150)
T ss_pred eeeEEEEE-ECCEEeeee
Confidence 99999999 899998763
|
|
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-13 Score=111.96 Aligned_cols=71 Identities=17% Similarity=0.361 Sum_probs=62.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+|||+|||+|+.+.|.|.++++++++ .+.++.|++|..+ .++..|+|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~------------------------~la~~~~V 66 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVP------------------------DFNKMYEL 66 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCH------------------------HHHHHcCC
Confidence 466 99999999999999999999999999864 3789999999875 48999999
Q ss_pred CCccEEEEECCCCcEEEcC
Q 008336 116 MGIPHLVILDENGKVLSDG 134 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~~ 134 (569)
.++||++++ ++|+.+...
T Consensus 67 ~~iPTf~~f-k~G~~v~~~ 84 (114)
T cd02954 67 YDPPTVMFF-FRNKHMKID 84 (114)
T ss_pred CCCCEEEEE-ECCEEEEEE
Confidence 999999999 789888753
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.2e-13 Score=110.92 Aligned_cols=69 Identities=16% Similarity=0.358 Sum_probs=57.7
Q ss_pred CCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-CCHHHHHHHHHhCCCcccccCCchhHHHHHH
Q 008336 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-EDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (569)
Q Consensus 34 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (569)
++++|| ++|+|||+||++|+.++|.|.+++++++ ++.++.|+.+ .. ..+++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~---~~~~~~vd~~~~~------------------------~~l~~ 66 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP---QIRHLAIEESSIK------------------------PSLLS 66 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc---cCceEEEECCCCC------------------------HHHHH
Confidence 457899 9999999999999999999999999985 2667777665 22 25889
Q ss_pred hcCCCCccEEEEECCCCcE
Q 008336 112 LFKVMGIPHLVILDENGKV 130 (569)
Q Consensus 112 ~~~v~~~P~~~lid~~G~i 130 (569)
.|+|.++||++++++ |.+
T Consensus 67 ~~~V~~~PT~~lf~~-g~~ 84 (100)
T cd02999 67 RYGVVGFPTILLFNS-TPR 84 (100)
T ss_pred hcCCeecCEEEEEcC-Cce
Confidence 999999999999964 543
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-13 Score=110.71 Aligned_cols=67 Identities=19% Similarity=0.374 Sum_probs=56.2
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-CChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-RDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
+++||+++|+|||+||++|+.++|.|+++++++++ +.++.|+.+ .. ..+++.
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~~-----------------------~~l~~~ 67 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSIK-----------------------PSLLSR 67 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCCC-----------------------HHHHHh
Confidence 45799999999999999999999999999998852 667777555 22 258899
Q ss_pred cCCCCccEEEEECCC
Q 008336 433 FKVSGIPMLVAIGPS 447 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~ 447 (569)
|+|+++||+++++++
T Consensus 68 ~~V~~~PT~~lf~~g 82 (100)
T cd02999 68 YGVVGFPTILLFNST 82 (100)
T ss_pred cCCeecCEEEEEcCC
Confidence 999999999999643
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-12 Score=110.97 Aligned_cols=73 Identities=18% Similarity=0.434 Sum_probs=63.3
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.|++++|+||++||++|+.+.|.+.++++++++. ++.++.|++|..+ .+++.|+|
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~~~-----------------------~l~~~~~V 77 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGHER-----------------------RLARKLGA 77 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccccH-----------------------HHHHHcCC
Confidence 4899999999999999999999999999999753 4778888777554 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++ ++|+++.+.
T Consensus 78 ~~~Pt~~i~-~~g~~~~~~ 95 (111)
T cd02963 78 HSVPAIVGI-INGQVTFYH 95 (111)
T ss_pred ccCCEEEEE-ECCEEEEEe
Confidence 999999999 689887763
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=115.77 Aligned_cols=74 Identities=27% Similarity=0.498 Sum_probs=63.5
Q ss_pred CCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 36 ~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
.+|+ ++|+|||+||++|+.++|.|.++++++.. .+.++.|++|.+.. ..+.+.|+
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~----------------------~~~~~~~~ 73 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKW----------------------LPEIDRYR 73 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCccc----------------------HHHHHHcC
Confidence 4788 99999999999999999999999999864 37889998885421 24678999
Q ss_pred CCCccEEEEECCCCcEEEc
Q 008336 115 VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 115 v~~~P~~~lid~~G~i~~~ 133 (569)
|.++|+++++|++|+++.+
T Consensus 74 V~~iPt~v~~~~~G~~v~~ 92 (142)
T cd02950 74 VDGIPHFVFLDREGNEEGQ 92 (142)
T ss_pred CCCCCEEEEECCCCCEEEE
Confidence 9999999999999998864
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.2e-13 Score=109.42 Aligned_cols=70 Identities=24% Similarity=0.554 Sum_probs=62.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|.++|+|+|+|||||+.+.|.+.+++.+|.+ +.++.|++|.. .++++.++|+
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde~-----------------------~~~~~~~~V~ 73 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDEL-----------------------EEVAKEFNVK 73 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEecccC-----------------------HhHHHhcCce
Confidence 69999999999999999999999999999863 67888888862 2589999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+.+.+-
T Consensus 74 ~~PTf~f~-k~g~~~~~~ 90 (106)
T KOG0907|consen 74 AMPTFVFY-KGGEEVDEV 90 (106)
T ss_pred EeeEEEEE-ECCEEEEEE
Confidence 99999999 899988873
|
|
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-12 Score=117.94 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=69.6
Q ss_pred CccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHH
Q 008336 17 SSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFK 87 (569)
Q Consensus 17 ~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~~~~ 87 (569)
..+++| +.+++|+.++|++++|| +||.|||+||++|. ++|.|++++++|+++| ++|++|+++ .+.+.++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g-l~Vlg~p~nqf~~qe~~~~~ei~ 80 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG-FVVLGFPCNQFLGQEPGSDEEIK 80 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC-eEEEEeeccccccCCCCCHHHHH
Confidence 356888 45789999999999999 99999999999996 6999999999999886 999999986 3667889
Q ss_pred HHHH-hCCCccccc
Q 008336 88 GYFS-KMPWLAVPF 100 (569)
Q Consensus 88 ~~~~-~~~~~~~~~ 100 (569)
+|++ +++..+..+
T Consensus 81 ~f~~~~~g~~Fpv~ 94 (183)
T PRK10606 81 TYCRTTWGVTFPMF 94 (183)
T ss_pred HHHHHccCCCceeE
Confidence 9997 576655444
|
|
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=106.17 Aligned_cols=71 Identities=17% Similarity=0.392 Sum_probs=61.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
+++++||+||++||++|+.+.|.++++++.+.+. +.++.|++|... .+++.|+|
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQP-----------------------QIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCCH-----------------------HHHHHcCC
Confidence 4789999999999999999999999999998653 777788777654 58999999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 436 SGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~ 453 (569)
+++|++++++ +|+++.+
T Consensus 65 ~~~Pt~~~~~-~g~~~~~ 81 (96)
T cd02956 65 QALPTVYLFA-AGQPVDG 81 (96)
T ss_pred CCCCEEEEEe-CCEEeee
Confidence 9999999995 8988765
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=111.35 Aligned_cols=68 Identities=32% Similarity=0.748 Sum_probs=61.3
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
+. |||+|||+||+||+.+.|.|+++..+|. |.+.+..|++|+.. +++..|+|.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~--g~~k~~kvdtD~~~------------------------ela~~Y~I~ 114 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYA--GKFKLYKVDTDEHP------------------------ELAEDYEIS 114 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhc--CeEEEEEEcccccc------------------------chHhhccee
Confidence 45 9999999999999999999999999995 46999999999775 489999999
Q ss_pred CccEEEEECCCCcEEE
Q 008336 117 GIPHLVILDENGKVLS 132 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~ 132 (569)
++||++++ ++|+.+.
T Consensus 115 avPtvlvf-knGe~~d 129 (150)
T KOG0910|consen 115 AVPTVLVF-KNGEKVD 129 (150)
T ss_pred eeeEEEEE-ECCEEee
Confidence 99999999 7888774
|
|
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-12 Score=111.05 Aligned_cols=87 Identities=26% Similarity=0.487 Sum_probs=66.0
Q ss_pred CC-CEEEEEEecCCChhHHhhhHHHH---HHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 356 AG-KTILLYFSAHWCPPCRAFLPKLI---DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 356 ~g-k~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
.| |+++|+||++||++|+++.+.+. ++.+.+.+ ++.++.|++|.+.... . ++........+++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~-~---------~~~~~~~~~~l~~ 78 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVT-D---------FDGEALSEKELAR 78 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceee-c---------cCCCCccHHHHHH
Confidence 37 89999999999999999999885 55566654 4888889888654211 1 1111123467899
Q ss_pred hcCCCCccEEEEECCC-CcEEEccc
Q 008336 432 KFKVSGIPMLVAIGPS-GRTITKEA 455 (569)
Q Consensus 432 ~~~v~~~Pt~~lid~~-G~i~~~~~ 455 (569)
.|+|.++||+++++++ |+++.+..
T Consensus 79 ~~~v~~~Pt~~~~~~~gg~~~~~~~ 103 (125)
T cd02951 79 KYRVRFTPTVIFLDPEGGKEIARLP 103 (125)
T ss_pred HcCCccccEEEEEcCCCCceeEEec
Confidence 9999999999999999 89988743
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=106.84 Aligned_cols=74 Identities=19% Similarity=0.408 Sum_probs=60.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+|||+||++|+.+.|.+.++++++.. ++.++.|++|.+.. ....+++.|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~--------------------d~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDV--------------------DREKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCcccc--------------------ccHHHHHHCCC
Confidence 567 99999999999999999999999887543 36789999986521 01258899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
.++||++++ ++|+.+.+
T Consensus 71 ~~iPT~i~f-k~G~~v~~ 87 (103)
T PHA02278 71 MSTPVLIGY-KDGQLVKK 87 (103)
T ss_pred ccccEEEEE-ECCEEEEE
Confidence 999999999 78888764
|
|
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-12 Score=114.24 Aligned_cols=87 Identities=20% Similarity=0.413 Sum_probs=61.3
Q ss_pred CCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchh
Q 008336 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSET 105 (569)
Q Consensus 27 ~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (569)
.|+.+++ ++ .+|+|||+||++|++++|.|+++++++ + +.|++|+.|.... ..++ ..+.. ..
T Consensus 43 ~G~~~~l----~~~~lvnFWAsWCppCr~e~P~L~~l~~~~---~-~~Vi~Vs~d~~~~------~~fp---~~~~~-~~ 104 (153)
T TIGR02738 43 QGRHANQ----DDYALVFFYQSTCPYCHQFAPVLKRFSQQF---G-LPVYAFSLDGQGL------TGFP---DPLPA-TP 104 (153)
T ss_pred cchhhhc----CCCEEEEEECCCChhHHHHHHHHHHHHHHc---C-CcEEEEEeCCCcc------cccc---cccCC-ch
Confidence 3555554 45 799999999999999999999999987 2 7799999886431 1111 11111 11
Q ss_pred HHHHHHhc---CCCCccEEEEECCCCcEEE
Q 008336 106 RDKLDELF---KVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 106 ~~~l~~~~---~v~~~P~~~lid~~G~i~~ 132 (569)
..+...| ++.++|++++||++|+++.
T Consensus 105 -~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 105 -EVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred -HHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 1233455 8899999999999988654
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-12 Score=107.96 Aligned_cols=71 Identities=23% Similarity=0.413 Sum_probs=61.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.+.++++++++. +.++.|++|..+ .+++.|+|
T Consensus 17 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v 70 (101)
T cd03003 17 SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDDR-----------------------MLCRSQGV 70 (101)
T ss_pred CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCccH-----------------------HHHHHcCC
Confidence 3689999999999999999999999999999754 788888888664 48999999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 436 SGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~ 453 (569)
+++||++++ ++|+.+.+
T Consensus 71 ~~~Pt~~~~-~~g~~~~~ 87 (101)
T cd03003 71 NSYPSLYVF-PSGMNPEK 87 (101)
T ss_pred CccCEEEEE-cCCCCccc
Confidence 999999999 78876554
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-12 Score=107.08 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=57.7
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH-HhcC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD-ELFK 114 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 114 (569)
.++ ++|.||||||++|+.++|.+.++++++++ .+.++.|+++.+. .++ +.|+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~------------------------~l~~~~~~ 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQ------------------------GKCRKQKH 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCCh------------------------HHHHHhcC
Confidence 456 99999999999999999999999999964 4889999998664 366 5899
Q ss_pred CCCccEEEEECCCCcE
Q 008336 115 VMGIPHLVILDENGKV 130 (569)
Q Consensus 115 v~~~P~~~lid~~G~i 130 (569)
|.++||++++ ++|+.
T Consensus 82 I~~~PTl~lf-~~g~~ 96 (113)
T cd03006 82 FFYFPVIHLY-YRSRG 96 (113)
T ss_pred CcccCEEEEE-ECCcc
Confidence 9999999999 67764
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-12 Score=106.43 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=61.9
Q ss_pred CCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 36 ~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
..|+ ++|+|||+||++|+.+.|.+.++++++... ++.++.|+++... .+++.|+
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~------------------------~l~~~~~ 76 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHER------------------------RLARKLG 76 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccH------------------------HHHHHcC
Confidence 4678 999999999999999999999999999754 4888888888653 4889999
Q ss_pred CCCccEEEEECCCCcEEEc
Q 008336 115 VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 115 v~~~P~~~lid~~G~i~~~ 133 (569)
|.++|+++++ ++|+++.+
T Consensus 77 V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 77 AHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred CccCCEEEEE-ECCEEEEE
Confidence 9999999999 58877653
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-12 Score=106.93 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=59.6
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHH-HhcC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS-RKFK 434 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~-~~~~ 434 (569)
.++++||.|||+||++|+.+.|.+.++++++++. +.++.|++|.+. .++ +.|+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~~-----------------------~l~~~~~~ 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWPQ-----------------------GKCRKQKH 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCCh-----------------------HHHHHhcC
Confidence 3789999999999999999999999999999754 788888877654 367 5899
Q ss_pred CCCccEEEEECCCCcEEE
Q 008336 435 VSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~ 452 (569)
|+++||++++ ++|+...
T Consensus 82 I~~~PTl~lf-~~g~~~~ 98 (113)
T cd03006 82 FFYFPVIHLY-YRSRGPI 98 (113)
T ss_pred CcccCEEEEE-ECCccce
Confidence 9999999999 6777543
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.5e-12 Score=104.84 Aligned_cols=70 Identities=17% Similarity=0.383 Sum_probs=59.5
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+|||+||++|+.++|.|.++++++++. .+.++.++.| .. .+++.|+|
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~-~~~~~~vd~d-~~------------------------~~~~~~~v 69 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD-LLHFATAEAD-TI------------------------DTLKRYRG 69 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC-cEEEEEEeCC-CH------------------------HHHHHcCC
Confidence 477 999999999999999999999999998754 3788888888 42 47899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
+++|+++++ ++|+.+.+
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (102)
T cd02948 70 KCEPTFLFY-KNGELVAV 86 (102)
T ss_pred CcCcEEEEE-ECCEEEEE
Confidence 999998888 68887753
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.6e-12 Score=103.92 Aligned_cols=69 Identities=23% Similarity=0.395 Sum_probs=58.2
Q ss_pred CCcEEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 37 KGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 37 ~gkvlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
+|+++|+|||+||++|+.+.|.+.++++.++.. ++.+..|+++... .+++.|+|.
T Consensus 16 ~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~------------------------~~~~~~~i~ 70 (101)
T cd02994 16 EGEWMIEFYAPWCPACQQLQPEWEEFADWSDDL-GINVAKVDVTQEP------------------------GLSGRFFVT 70 (101)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHhhccC-CeEEEEEEccCCH------------------------hHHHHcCCc
Confidence 455889999999999999999999999987643 4888888888653 488899999
Q ss_pred CccEEEEECCCCcEE
Q 008336 117 GIPHLVILDENGKVL 131 (569)
Q Consensus 117 ~~P~~~lid~~G~i~ 131 (569)
++||++++ ++|++.
T Consensus 71 ~~Pt~~~~-~~g~~~ 84 (101)
T cd02994 71 ALPTIYHA-KDGVFR 84 (101)
T ss_pred ccCEEEEe-CCCCEE
Confidence 99999998 788753
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-12 Score=124.67 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=69.7
Q ss_pred ceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHH
Q 008336 349 KVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 428 (569)
Q Consensus 349 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 428 (569)
...++++.|+++||+||++||++|+.++|.|++++++++ +.|++|++|.... ..||... .+..
T Consensus 158 ~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~-----------~~fp~~~-~d~~ 220 (271)
T TIGR02740 158 DRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPL-----------PGFPNAR-PDAG 220 (271)
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCcc-----------ccCCccc-CCHH
Confidence 355677889999999999999999999999999999873 7899999997642 1244442 2345
Q ss_pred HHHhcCCCCccEEEEECCCCcEEE
Q 008336 429 LSRKFKVSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 429 l~~~~~v~~~Pt~~lid~~G~i~~ 452 (569)
+++.|+|.++|+++|++++|..+.
T Consensus 221 la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 221 QAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred HHHHcCCCcCCeEEEEECCCCEEE
Confidence 789999999999999999554443
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-12 Score=121.89 Aligned_cols=79 Identities=22% Similarity=0.471 Sum_probs=69.3
Q ss_pred ceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHH
Q 008336 349 KVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 428 (569)
Q Consensus 349 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 428 (569)
...+...+.+||||+||+|||++|+.++|.|+++...++++ +.++.|++|..+ .
T Consensus 35 ~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p-----------------------~ 88 (304)
T COG3118 35 QEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEP-----------------------M 88 (304)
T ss_pred HHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcch-----------------------h
Confidence 33344445679999999999999999999999999999987 999999999886 4
Q ss_pred HHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 429 LSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 429 l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
++..|||+++||+|++ ++|+.+.-.
T Consensus 89 vAaqfgiqsIPtV~af-~dGqpVdgF 113 (304)
T COG3118 89 VAAQFGVQSIPTVYAF-KDGQPVDGF 113 (304)
T ss_pred HHHHhCcCcCCeEEEe-eCCcCcccc
Confidence 8999999999999999 899998863
|
|
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.33 E-value=8e-12 Score=102.74 Aligned_cols=69 Identities=19% Similarity=0.365 Sum_probs=60.4
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+|+ ++|+|||+||++|+.+.|.+.++++.+.. .+.++.|+++... .+++.|+|
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQP------------------------QIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCH------------------------HHHHHcCC
Confidence 577 99999999999999999999999999864 4888888888663 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|++++++ +|+++.
T Consensus 65 ~~~Pt~~~~~-~g~~~~ 80 (96)
T cd02956 65 QALPTVYLFA-AGQPVD 80 (96)
T ss_pred CCCCEEEEEe-CCEEee
Confidence 9999999995 887764
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.6e-12 Score=104.20 Aligned_cols=77 Identities=19% Similarity=0.423 Sum_probs=62.1
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
.||+++|+||++||++|+.+.+.+ .++++.+.+ ++.++.|+++.+.. ....+++.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~-------------------~~~~~~~~ 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDP-------------------EITALLKR 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCH-------------------HHHHHHHH
Confidence 379999999999999999999887 567777754 38888888765421 12468899
Q ss_pred cCCCCccEEEEECC-CCcEEEcc
Q 008336 433 FKVSGIPMLVAIGP-SGRTITKE 454 (569)
Q Consensus 433 ~~v~~~Pt~~lid~-~G~i~~~~ 454 (569)
|+++++||++++++ +|+++.+.
T Consensus 68 ~~i~~~Pti~~~~~~~g~~~~~~ 90 (104)
T cd02953 68 FGVFGPPTYLFYGPGGEPEPLRL 90 (104)
T ss_pred cCCCCCCEEEEECCCCCCCCccc
Confidence 99999999999998 89987764
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.5e-12 Score=111.84 Aligned_cols=115 Identities=15% Similarity=0.276 Sum_probs=96.9
Q ss_pred CCcccee-cCC---CCceeccc-CCCCEEEEEEe-cCCChhHHhh-hHHHHHHHHHHhhcCCCe-EEEEEeCCCChhHHH
Q 008336 337 GDLDFVV-GKN---GGKVPVSD-LAGKTILLYFS-AHWCPPCRAF-LPKLIDAYKKIKERNESL-EVVFISSDRDQTSFD 408 (569)
Q Consensus 337 ~~~~f~~-~~~---g~~v~l~~-~~gk~vll~F~-a~wC~~C~~~-~~~l~~l~~~~~~~~~~~-~vv~is~d~~~~~~~ 408 (569)
..|+|.+ +.+ |+.++|++ ++||+++|+|| +.||+.|..+ ++.|++.++++.+. +. .|++||.|.. ...+
T Consensus 4 ~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~--g~~~V~~iS~D~~-~~~~ 80 (155)
T cd03013 4 KLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK--GVDEVICVSVNDP-FVMK 80 (155)
T ss_pred cCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC--CCCEEEEEECCCH-HHHH
Confidence 4689987 664 99999999 58887777777 8999999999 99999999999876 67 6999999954 6788
Q ss_pred HHHhcCCC-cccccCchhhHHHHHhcCCC------C-----ccEEEEECCCCcEEEccc
Q 008336 409 EFFKGMPW-LALPFGDARKASLSRKFKVS------G-----IPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 409 ~~~~~~~~-~~~~~~~d~~~~l~~~~~v~------~-----~Pt~~lid~~G~i~~~~~ 455 (569)
+|.++++. ..+|++.|.+.++++.||+. + .++++||| +|+|++...
T Consensus 81 ~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~ 138 (155)
T cd03013 81 AWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFV 138 (155)
T ss_pred HHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEE
Confidence 89888885 48999999999999999983 1 36789999 799998753
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9e-12 Score=107.78 Aligned_cols=71 Identities=10% Similarity=0.193 Sum_probs=61.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++|||.|||+||+||+.+.|.|.++++++++. +.|+-|++|..+ +++..|+|+
T Consensus 23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~~-----------------------dla~~y~I~ 76 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEVP-----------------------DFNTMYELY 76 (142)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCCH-----------------------HHHHHcCcc
Confidence 689999999999999999999999999999764 788899999776 599999999
Q ss_pred CccEEE-EECCCCc-EEEcc
Q 008336 437 GIPMLV-AIGPSGR-TITKE 454 (569)
Q Consensus 437 ~~Pt~~-lid~~G~-i~~~~ 454 (569)
+.|+++ ++ ++|. .+.+.
T Consensus 77 ~~~t~~~ff-k~g~~~vd~~ 95 (142)
T PLN00410 77 DPCTVMFFF-RNKHIMIDLG 95 (142)
T ss_pred CCCcEEEEE-ECCeEEEEEe
Confidence 777666 77 7887 66664
|
|
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=104.31 Aligned_cols=71 Identities=27% Similarity=0.578 Sum_probs=62.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|+++++++.++ +.++.+++|..+ .+++.|+|+
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~ 74 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-----------------------GTAPKYGIR 74 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCCh-----------------------hHHHhCCCC
Confidence 689999999999999999999999999999754 888888888664 377889999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++|+++++ ++|+++.+.
T Consensus 75 ~~Pt~~~~-~~G~~~~~~ 91 (109)
T PRK09381 75 GIPTLLLF-KNGEVAATK 91 (109)
T ss_pred cCCEEEEE-eCCeEEEEe
Confidence 99999999 799988763
|
|
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.1e-12 Score=102.88 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=63.2
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+|+|||.|+|+||+||+.+.|.|.+++++++.. +.++.|++|..+ ++++.|+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~-----------------------dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVP-----------------------VYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccH-----------------------HHHHhcCc
Confidence 4799999999999999999999999999999643 677888888765 59999999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+.+||++++ ++|+-+..+
T Consensus 67 ~amPtfvff-kngkh~~~d 84 (114)
T cd02986 67 SYIPSTIFF-FNGQHMKVD 84 (114)
T ss_pred eeCcEEEEE-ECCcEEEEe
Confidence 999999999 788877764
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.3e-12 Score=104.43 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=63.5
Q ss_pred CCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchh
Q 008336 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSET 105 (569)
Q Consensus 27 ~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (569)
+++.++..-..++ ++|+|||+||++|+.+.|.+.+++++++. .+.++.|+++..+
T Consensus 7 ~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~---------------------- 62 (101)
T cd03003 7 DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDR---------------------- 62 (101)
T ss_pred CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccH----------------------
Confidence 3443433333568 99999999999999999999999999964 4889999998663
Q ss_pred HHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 106 RDKLDELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 106 ~~~l~~~~~v~~~P~~~lid~~G~i~ 131 (569)
.+++.|+|+++||++++ ++|+.+
T Consensus 63 --~~~~~~~v~~~Pt~~~~-~~g~~~ 85 (101)
T cd03003 63 --MLCRSQGVNSYPSLYVF-PSGMNP 85 (101)
T ss_pred --HHHHHcCCCccCEEEEE-cCCCCc
Confidence 48899999999999999 678643
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=110.08 Aligned_cols=139 Identities=20% Similarity=0.340 Sum_probs=112.1
Q ss_pred hccCCcccee-cC-CC---CceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--hh
Q 008336 334 LVSGDLDFVV-GK-NG---GKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QT 405 (569)
Q Consensus 334 ~~~~~~~f~~-~~-~g---~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~--~~ 405 (569)
.....|+|.. .. .| .+++++++.||.++|+|| +..-+.|..++..+++.|++|+++ +++|+++|+|.. ..
T Consensus 5 Ig~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~--g~eVigvS~Ds~fsH~ 82 (194)
T COG0450 5 IGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR--GVEVIGVSTDSVFSHK 82 (194)
T ss_pred cCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc--CCEEEEEecCcHHHHH
Confidence 3455789977 33 45 399999999999999999 677888999999999999999988 799999999964 45
Q ss_pred HHHHHHhcCCC---cccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCC-HHHHH
Q 008336 406 SFDEFFKGMPW---LALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFT-EERMK 475 (569)
Q Consensus 406 ~~~~~~~~~~~---~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~-~~~~~ 475 (569)
.|.+...+... +.||+..|.++++++.||+- ....+|||||+|+|+.... +|.+ +++++
T Consensus 83 aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v-----------~~~~iGRn~d 151 (194)
T COG0450 83 AWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILV-----------NPLTIGRNVD 151 (194)
T ss_pred HHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEE-----------ecCCCCcCHH
Confidence 66666555543 78999999999999999985 4578999999999998742 2333 67788
Q ss_pred HHHHHhhhhh
Q 008336 476 EIDGQYNEMA 485 (569)
Q Consensus 476 ~l~~~l~~l~ 485 (569)
++.+.++.+.
T Consensus 152 EilR~idAlq 161 (194)
T COG0450 152 EILRVIDALQ 161 (194)
T ss_pred HHHHHHHHHH
Confidence 8888877654
|
|
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.3e-12 Score=115.39 Aligned_cols=121 Identities=18% Similarity=0.311 Sum_probs=86.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|.|+|+|+|.||+||++.+|.+..++++|+. ..++-|++|.- +..+..+||.
T Consensus 21 ~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~c-----------------------~~taa~~gV~ 73 (288)
T KOG0908|consen 21 GKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDEC-----------------------RGTAATNGVN 73 (288)
T ss_pred ceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHHh-----------------------hchhhhcCcc
Confidence 69999999999999999999999999999964 45555555533 3477889999
Q ss_pred CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCccc-----------------------c
Q 008336 437 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENV-----------------------K 493 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~~~-----------------------~ 493 (569)
++||++++ .+|+-+.+ ..+++...|++.+++.+...+... .
T Consensus 74 amPTFiff-~ng~kid~---------------~qGAd~~gLe~kv~~~~stsaa~~~~~~~~Kgq~dL~~~I~~~glecl 137 (288)
T KOG0908|consen 74 AMPTFIFF-RNGVKIDQ---------------IQGADASGLEEKVAKYASTSAASSGTGDIVKGQMDLKPFIDKVGLECL 137 (288)
T ss_pred cCceEEEE-ecCeEeee---------------ecCCCHHHHHHHHHHHhccCcccccCCCcccceehhhhhhhhhcceee
Confidence 99999999 78887776 344555667777777654222211 1
Q ss_pred cccccceeeecc---cCeeeccCCCCCCCc
Q 008336 494 HALHEHELVLDR---CGVYSCDGCDEEGRV 520 (569)
Q Consensus 494 ~~~~~~~l~~~~---~~~~~c~~C~~~g~~ 520 (569)
....+|.|.--. ...++..+|+||+..
T Consensus 138 NqsddH~l~nalkk~~ss~lesD~DeQl~i 167 (288)
T KOG0908|consen 138 NQSDDHFLKNALKKNFSSNLESDCDEQLII 167 (288)
T ss_pred ccccccchHHHHhhccccceecccccceEE
Confidence 111166663321 226788999999865
|
|
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=108.54 Aligned_cols=74 Identities=24% Similarity=0.475 Sum_probs=63.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.++++++++.+. ++.++.|++|..+ ++++.|+|+
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~--~v~f~~VDvd~~~-----------------------~la~~~~V~ 101 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN--NLKFGKIDIGRFP-----------------------NVAEKFRVS 101 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CeEEEEEECCCCH-----------------------HHHHHcCce
Confidence 679999999999999999999999999998643 5889999988775 377778887
Q ss_pred C------ccEEEEECCCCcEEEccch
Q 008336 437 G------IPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 437 ~------~Pt~~lid~~G~i~~~~~~ 456 (569)
+ +||++++ ++|+.+.+..+
T Consensus 102 ~~~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 102 TSPLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred ecCCcCCCCEEEEE-ECCEEEEEEec
Confidence 7 9999999 69999988654
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.4e-12 Score=106.41 Aligned_cols=73 Identities=25% Similarity=0.588 Sum_probs=57.1
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
++|+|+|+|||+||++|+.+.|.+.+........ ..++.|.+|.+.+ ...+.|++
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~~----------------------~~~~~~~~ 72 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDEE----------------------PKDEEFSP 72 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCCC----------------------chhhhccc
Confidence 4899999999999999999999998876654422 3566667665432 13456778
Q ss_pred CC--ccEEEEECCCCcEEEc
Q 008336 436 SG--IPMLVAIGPSGRTITK 453 (569)
Q Consensus 436 ~~--~Pt~~lid~~G~i~~~ 453 (569)
.+ +||++++|++|+++.+
T Consensus 73 ~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 73 DGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred CCCccceEEEECCCCCCchh
Confidence 76 9999999999999886
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-11 Score=117.67 Aligned_cols=87 Identities=23% Similarity=0.534 Sum_probs=71.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+.+ |||+||||||++|+.++|.|.++..+++ |.+.++.|++|..+. ++..|||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~--G~f~LakvN~D~~p~------------------------vAaqfgi 95 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK--GKFKLAKVNCDAEPM------------------------VAAQFGV 95 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhC--CceEEEEecCCcchh------------------------HHHHhCc
Confidence 455 9999999999999999999999999996 469999999998754 8999999
Q ss_pred CCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHH
Q 008336 116 MGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQE 161 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 161 (569)
+++|++|+| ++|+.+.- + ..+.+++.+.++++..
T Consensus 96 qsIPtV~af-~dGqpVdg--------F---~G~qPesqlr~~ld~~ 129 (304)
T COG3118 96 QSIPTVYAF-KDGQPVDG--------F---QGAQPESQLRQFLDKV 129 (304)
T ss_pred CcCCeEEEe-eCCcCccc--------c---CCCCcHHHHHHHHHHh
Confidence 999999999 88987752 2 2244566677766553
|
|
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=107.89 Aligned_cols=72 Identities=19% Similarity=0.406 Sum_probs=61.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ ++|+|||+||++|+.+.|.+.++++++... ++.++.|++|..++ +++.|+|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~~------------------------la~~~~V 100 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFPN------------------------VAEKFRV 100 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCHH------------------------HHHHcCc
Confidence 467 999999999999999999999999998654 49999999997754 6777777
Q ss_pred CC------ccEEEEECCCCcEEEcC
Q 008336 116 MG------IPHLVILDENGKVLSDG 134 (569)
Q Consensus 116 ~~------~P~~~lid~~G~i~~~~ 134 (569)
.+ +||++++ ++|+.+.+.
T Consensus 101 ~~~~~v~~~PT~ilf-~~Gk~v~r~ 124 (152)
T cd02962 101 STSPLSKQLPTIILF-QGGKEVARR 124 (152)
T ss_pred eecCCcCCCCEEEEE-ECCEEEEEE
Confidence 76 9999999 688887654
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=103.01 Aligned_cols=71 Identities=24% Similarity=0.481 Sum_probs=60.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|.||++||++|+.+.|.++++++++.+. +.++.|+++..+ ++++.|+|+
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~i~ 72 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKYE-----------------------SLCQQANIR 72 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCchH-----------------------HHHHHcCCC
Confidence 679999999999999999999999999998643 778888777554 588999999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 437 GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~ 453 (569)
++||++++..+|+.+.+
T Consensus 73 ~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 73 AYPTIRLYPGNASKYHS 89 (104)
T ss_pred cccEEEEEcCCCCCceE
Confidence 99999999665466655
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-11 Score=100.13 Aligned_cols=69 Identities=28% Similarity=0.500 Sum_probs=56.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
+++ ++|+|||+||++|+.++|.|.+++++++..+ .+.+..++++... .+++.|+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~------------------------~~~~~~~ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS------------------------SIASEFG 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH------------------------hHHhhcC
Confidence 456 9999999999999999999999999997543 4777777776542 4788999
Q ss_pred CCCccEEEEECCCCcE
Q 008336 115 VMGIPHLVILDENGKV 130 (569)
Q Consensus 115 v~~~P~~~lid~~G~i 130 (569)
|.++|+++++ ++|..
T Consensus 70 I~~~Pt~~l~-~~~~~ 84 (104)
T cd03000 70 VRGYPTIKLL-KGDLA 84 (104)
T ss_pred CccccEEEEE-cCCCc
Confidence 9999999999 44533
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-11 Score=100.47 Aligned_cols=68 Identities=22% Similarity=0.503 Sum_probs=56.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
+|+ ++|+|||+||++|+.+.|.|.++++.++.. ++.+..|+++..+ .+++.|+|
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~~~-----------------------~~~~~~~i 69 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL--GINVAKVDVTQEP-----------------------GLSGRFFV 69 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC--CeEEEEEEccCCH-----------------------hHHHHcCC
Confidence 355 689999999999999999999999876532 4777777776554 47889999
Q ss_pred CCccEEEEECCCCcE
Q 008336 436 SGIPMLVAIGPSGRT 450 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i 450 (569)
+++||++++ ++|++
T Consensus 70 ~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 70 TALPTIYHA-KDGVF 83 (101)
T ss_pred cccCEEEEe-CCCCE
Confidence 999999998 78885
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-11 Score=105.54 Aligned_cols=71 Identities=24% Similarity=0.600 Sum_probs=61.7
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|+++|+||++||++|+.+.|.|.++++++.++ +.++.|+++..+ .+++.|+|+
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~V~ 105 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAER-----------------------ELSARFRIR 105 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCCH-----------------------HHHHhcCCC
Confidence 789999999999999999999999999888653 777777776554 588999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++|+++++ ++|+++.+.
T Consensus 106 ~~Ptlii~-~~G~~v~~~ 122 (139)
T PRK10996 106 SIPTIMIF-KNGQVVDML 122 (139)
T ss_pred ccCEEEEE-ECCEEEEEE
Confidence 99999999 589998873
|
|
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=102.33 Aligned_cols=68 Identities=26% Similarity=0.599 Sum_probs=59.9
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.+| ++|+|+|+|||||+.+.|.+.+++.+|. ++.++.|++|+. ..+++.++|
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~---~v~Flkvdvde~------------------------~~~~~~~~V 72 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP---DVVFLKVDVDEL------------------------EEVAKEFNV 72 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCC---CCEEEEEecccC------------------------HhHHHhcCc
Confidence 468 9999999999999999999999999997 378999999973 358999999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++||++++ ++|+.+.
T Consensus 73 ~~~PTf~f~-k~g~~~~ 88 (106)
T KOG0907|consen 73 KAMPTFVFY-KGGEEVD 88 (106)
T ss_pred eEeeEEEEE-ECCEEEE
Confidence 999999999 7787665
|
|
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=108.78 Aligned_cols=114 Identities=22% Similarity=0.295 Sum_probs=91.5
Q ss_pred ccCccCCcee-cCC---CceeecCC-CCCc-EEEEE-ecCCCHhhHhh-HHHHHHHHHHhcCCCCE-EEEEEeCCCCHHH
Q 008336 15 LSSSARDFLI-RSN---GDQVKLDS-LKGK-IGLYF-SASWCGPCQRF-TPILAEVYNELSRQGDF-EVIFVSGDEDDEA 85 (569)
Q Consensus 15 ~g~~~pdf~~-~~~---g~~v~l~~-~~gk-vlv~F-~a~wC~~C~~~-~p~l~~~~~~~~~~g~~-~vv~v~~d~~~~~ 85 (569)
+|+.+|+|.+ +.+ |+.++|++ ++|| ++|+| ++.|||.|..+ ++.|++.+++|.+.| . .|++|+.| +...
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g-~~~V~~iS~D-~~~~ 78 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG-VDEVICVSVN-DPFV 78 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC-CCEEEEEECC-CHHH
Confidence 5899999954 443 99999999 5888 55555 59999999999 999999999999886 7 69999999 5567
Q ss_pred HHHHHHhCCC--cccccCCchhHHHHHHhcCCC------C-----ccEEEEECCCCcEEEc
Q 008336 86 FKGYFSKMPW--LAVPFSDSETRDKLDELFKVM------G-----IPHLVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~------~-----~P~~~lid~~G~i~~~ 133 (569)
.++|.++.+. .+..++|.+ ..+++.||+. + .+.++||| +|+|++.
T Consensus 79 ~~~~~~~~~~~~~f~lLsD~~--~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~ 136 (155)
T cd03013 79 MKAWGKALGAKDKIRFLADGN--GEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL 136 (155)
T ss_pred HHHHHHhhCCCCcEEEEECCC--HHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence 8889998887 444556654 5799999983 1 36779998 6999874
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.2e-11 Score=98.98 Aligned_cols=70 Identities=20% Similarity=0.389 Sum_probs=56.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|.||++||++|+++.|.|.+++++++.....+.+..++++..+ .+++.|+|+
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~-----------------------~~~~~~~I~ 71 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS-----------------------SIASEFGVR 71 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH-----------------------hHHhhcCCc
Confidence 579999999999999999999999999999754334666666665433 478899999
Q ss_pred CccEEEEECCCCcE
Q 008336 437 GIPMLVAIGPSGRT 450 (569)
Q Consensus 437 ~~Pt~~lid~~G~i 450 (569)
++||+++++ +|.+
T Consensus 72 ~~Pt~~l~~-~~~~ 84 (104)
T cd03000 72 GYPTIKLLK-GDLA 84 (104)
T ss_pred cccEEEEEc-CCCc
Confidence 999999994 4543
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-11 Score=101.59 Aligned_cols=71 Identities=21% Similarity=0.438 Sum_probs=59.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcC---CCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERN---ESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~---~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
+++++|+|||+||++|+++.|.+.++++.+++.. ..+.++.|++|... .+++.|
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-----------------------~l~~~~ 74 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-----------------------DIADRY 74 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-----------------------HHHHhC
Confidence 6899999999999999999999999999886432 13666677777554 589999
Q ss_pred CCCCccEEEEECCCCcEE
Q 008336 434 KVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~ 451 (569)
+|+++||++++ ++|++.
T Consensus 75 ~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 75 RINKYPTLKLF-RNGMMM 91 (108)
T ss_pred CCCcCCEEEEE-eCCcCc
Confidence 99999999999 788843
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-11 Score=103.19 Aligned_cols=69 Identities=22% Similarity=0.461 Sum_probs=58.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCC----CCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHH
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ----GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~----g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (569)
.++ ++|+|||+||++|+++.|.+.++++.+++. +.+.++.|++|... .+++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~------------------------~l~~ 72 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES------------------------DIAD 72 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH------------------------HHHH
Confidence 357 999999999999999999999999887532 24888888888663 4899
Q ss_pred hcCCCCccEEEEECCCCcE
Q 008336 112 LFKVMGIPHLVILDENGKV 130 (569)
Q Consensus 112 ~~~v~~~P~~~lid~~G~i 130 (569)
.|+|+++|+++++ ++|++
T Consensus 73 ~~~v~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 73 RYRINKYPTLKLF-RNGMM 90 (108)
T ss_pred hCCCCcCCEEEEE-eCCcC
Confidence 9999999999999 77874
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.25 E-value=6e-11 Score=108.49 Aligned_cols=117 Identities=26% Similarity=0.473 Sum_probs=93.9
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChh-HHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC---ChhHHHHHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQTSFDEFF 411 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~---~~~~~~~~~ 411 (569)
..++|.+ |.+|+.+++++++||++||+|..+.||. |...+..|.++.+++.++..++++++||+|. +++.+++|.
T Consensus 31 ~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 31 IVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYA 110 (174)
T ss_dssp SSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHH
T ss_pred cCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHH
Confidence 3578988 9999999999999999999999999985 9999999999999998765689999999984 577899999
Q ss_pred hcCC--CcccccCchhhHHHHHhcCCC----------------CccEEEEECCCCcEEEc
Q 008336 412 KGMP--WLALPFGDARKASLSRKFKVS----------------GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 412 ~~~~--~~~~~~~~d~~~~l~~~~~v~----------------~~Pt~~lid~~G~i~~~ 453 (569)
+.++ |..+....+...++++.|++. ....++||||+|+++..
T Consensus 111 ~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 111 KKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp HCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred HhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 8764 555555455566788888754 23478999999999876
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-11 Score=102.38 Aligned_cols=96 Identities=19% Similarity=0.433 Sum_probs=66.3
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.||+++|+||++||++|+++.+.+.+..+-...-..++.++.++++........+.+..+. +.......++++.|+|
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYGV 80 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcCC
Confidence 4899999999999999999999988644422111124888999888765544455443321 2223345579999999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++|++|+++.+.
T Consensus 81 ~gtPt~~~~d~~G~~v~~~ 99 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRI 99 (112)
T ss_dssp -SSSEEEECTTTSCEEEEE
T ss_pred CccCEEEEEcCCCCEEEEe
Confidence 9999999999999998763
|
... |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-11 Score=98.86 Aligned_cols=71 Identities=25% Similarity=0.518 Sum_probs=60.4
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ ++|+||++||++|+.+.|.+.++++.+...+++.++.++++... .+++.|++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------------------~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK------------------------DLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH------------------------HHHHhCCC
Confidence 678 99999999999999999999999999976545888888777553 58899999
Q ss_pred CCccEEEEECCCCcEE
Q 008336 116 MGIPHLVILDENGKVL 131 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~ 131 (569)
+++|+++++++++.+.
T Consensus 68 ~~~P~~~~~~~~~~~~ 83 (102)
T TIGR01126 68 SGFPTIKFFPKGKKPV 83 (102)
T ss_pred CcCCEEEEecCCCcce
Confidence 9999999998776543
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-11 Score=98.83 Aligned_cols=71 Identities=23% Similarity=0.450 Sum_probs=59.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+++.|.|.++++++.. .+.++.++.+.. .++++.|+++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~-----------------------~~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEEL-----------------------PEISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccC-----------------------HHHHHhcCCc
Confidence 68999999999999999999999999988732 366666655433 2588999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ .+|+++.+.
T Consensus 68 ~~Pt~~~~-~~g~~~~~~ 84 (97)
T cd02984 68 AVPTFVFF-RNGTIVDRV 84 (97)
T ss_pred cccEEEEE-ECCEEEEEE
Confidence 99999999 589988774
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.3e-11 Score=100.82 Aligned_cols=73 Identities=18% Similarity=0.436 Sum_probs=59.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH-hcC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR-KFK 434 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~-~~~ 434 (569)
+||+++|.||++||++|+++.|.|.++++.+++. ++.++.|++|.+. ..+++ .|+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~--~~~~~~vd~d~~~----------------------~~~~~~~~~ 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS--NVKVAKFNADGEQ----------------------REFAKEELQ 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECCccc----------------------hhhHHhhcC
Confidence 3789999999999999999999999999999753 5888888887632 13565 599
Q ss_pred CCCccEEEEECCCCcEEE
Q 008336 435 VSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~ 452 (569)
|+++||+++++++++...
T Consensus 76 v~~~Pti~~f~~~~~~~~ 93 (109)
T cd02993 76 LKSFPTILFFPKNSRQPI 93 (109)
T ss_pred CCcCCEEEEEcCCCCCce
Confidence 999999999987765443
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.8e-11 Score=108.71 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=50.4
Q ss_pred CcEEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCC
Q 008336 38 GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 117 (569)
Q Consensus 38 gkvlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 117 (569)
|+++++|||+||++|+.+.|.+.++++++. ++.++.|+.| |+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d--------------------------------~~V~~ 62 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA--------------------------------DANNE 62 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc--------------------------------cCccc
Confidence 349999999999999999999999999985 3666665432 89999
Q ss_pred ccEEEEECCCCcEEEc
Q 008336 118 IPHLVILDENGKVLSD 133 (569)
Q Consensus 118 ~P~~~lid~~G~i~~~ 133 (569)
+|+++++ ++|+.+.+
T Consensus 63 vPtfv~~-~~g~~i~r 77 (204)
T PTZ00062 63 YGVFEFY-QNSQLINS 77 (204)
T ss_pred ceEEEEE-ECCEEEee
Confidence 9999999 78888764
|
|
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-11 Score=101.59 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=59.7
Q ss_pred CCEEEEEEecCCChh--HH--hhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 357 GKTILLYFSAHWCPP--CR--AFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 357 gk~vll~F~a~wC~~--C~--~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
..++|++||++||+| |+ .+.|.+.+++.++-.. .++.|+.|++|.++ ++++.
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~-~~v~~~kVD~d~~~-----------------------~La~~ 82 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED-KGIGFGLVDSKKDA-----------------------KVAKK 82 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc-CCCEEEEEeCCCCH-----------------------HHHHH
Confidence 469999999999987 99 7888898888887221 14888888888775 59999
Q ss_pred cCCCCccEEEEECCCCcEEE
Q 008336 433 FKVSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~ 452 (569)
|+|+++||++++ ++|+++.
T Consensus 83 ~~I~~iPTl~lf-k~G~~v~ 101 (120)
T cd03065 83 LGLDEEDSIYVF-KDDEVIE 101 (120)
T ss_pred cCCccccEEEEE-ECCEEEE
Confidence 999999999999 7999776
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.6e-11 Score=100.69 Aligned_cols=69 Identities=29% Similarity=0.585 Sum_probs=59.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.+.++++.+.+. +.++.|++|.+. ...+++.|+|+
T Consensus 18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~---------------------~~~~~~~~~i~ 73 (109)
T cd03002 18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDK---------------------NKPLCGKYGVQ 73 (109)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccc---------------------cHHHHHHcCCC
Confidence 789999999999999999999999999998654 788888888632 13588999999
Q ss_pred CccEEEEECCCCc
Q 008336 437 GIPMLVAIGPSGR 449 (569)
Q Consensus 437 ~~Pt~~lid~~G~ 449 (569)
++||++++++++.
T Consensus 74 ~~Pt~~~~~~~~~ 86 (109)
T cd03002 74 GFPTLKVFRPPKK 86 (109)
T ss_pred cCCEEEEEeCCCc
Confidence 9999999977763
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-11 Score=99.21 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=58.5
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|.|||+||++|+.+.|.+.++++++.. .+.++.|+++... .+++.|+|
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~i 71 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYE------------------------SLCQQANI 71 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchH------------------------HHHHHcCC
Confidence 466 99999999999999999999999999853 4888899888653 48899999
Q ss_pred CCccEEEEECCCCcEE
Q 008336 116 MGIPHLVILDENGKVL 131 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~ 131 (569)
.++|+++++..+|+.+
T Consensus 72 ~~~Pt~~~~~~g~~~~ 87 (104)
T cd03004 72 RAYPTIRLYPGNASKY 87 (104)
T ss_pred CcccEEEEEcCCCCCc
Confidence 9999999996653443
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.6e-11 Score=99.25 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=64.4
Q ss_pred CCEEEEEEecCC--ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 357 GKTILLYFSAHW--CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 357 gk~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
|.+++|.||++| ||+|+.+.|.|.++++++.++ +.++.|++|..+ +++..|+
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~~-----------------------~la~~f~ 80 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADEQ-----------------------ALAARFG 80 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCCH-----------------------HHHHHcC
Confidence 678999999997 999999999999999999765 788888888775 5899999
Q ss_pred CCCccEEEEECCCCcEEEccc
Q 008336 435 VSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~~~~ 455 (569)
|+++||++++ ++|+++.+..
T Consensus 81 V~sIPTli~f-kdGk~v~~~~ 100 (111)
T cd02965 81 VLRTPALLFF-RDGRYVGVLA 100 (111)
T ss_pred CCcCCEEEEE-ECCEEEEEEe
Confidence 9999999999 8999998743
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-11 Score=97.86 Aligned_cols=69 Identities=22% Similarity=0.342 Sum_probs=60.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.+| |+|.|+|+|||+|+.+.|.|.++++++++. +.++.|++|+.+ ++++.|+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~--~~f~kVDVDev~------------------------dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM--ASIYLVDVDKVP------------------------VYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc--eEEEEEeccccH------------------------HHHHhcCc
Confidence 578 999999999999999999999999999632 789999999774 48999999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.+.|+++++ ++|+-+.
T Consensus 67 ~amPtfvff-kngkh~~ 82 (114)
T cd02986 67 SYIPSTIFF-FNGQHMK 82 (114)
T ss_pred eeCcEEEEE-ECCcEEE
Confidence 999999988 6776655
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-11 Score=99.50 Aligned_cols=71 Identities=25% Similarity=0.557 Sum_probs=58.9
Q ss_pred EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCc
Q 008336 359 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 438 (569)
Q Consensus 359 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~ 438 (569)
+++|+||++||++|+.+.|.+.++++++++....+.++.|+.+... .+++.|+|.++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------------------~~~~~~~v~~~ 74 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-----------------------ELCSEFQVRGY 74 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-----------------------hhHhhcCCCcC
Confidence 5999999999999999999999999999762234777777766543 47889999999
Q ss_pred cEEEEECCCCcEEEc
Q 008336 439 PMLVAIGPSGRTITK 453 (569)
Q Consensus 439 Pt~~lid~~G~i~~~ 453 (569)
||++++ ++|+.+.+
T Consensus 75 Pt~~~~-~~g~~~~~ 88 (102)
T cd03005 75 PTLLLF-KDGEKVDK 88 (102)
T ss_pred CEEEEE-eCCCeeeE
Confidence 999999 67877655
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=98.44 Aligned_cols=68 Identities=32% Similarity=0.657 Sum_probs=59.9
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+||++||++|+.+.|.|.++++++.. .+.++.++++... .+.+.|++.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~ 74 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNP------------------------GTAPKYGIR 74 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCCh------------------------hHHHhCCCC
Confidence 56 99999999999999999999999999874 4889999998663 377889999
Q ss_pred CccEEEEECCCCcEEE
Q 008336 117 GIPHLVILDENGKVLS 132 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~ 132 (569)
++|+++++ ++|+++.
T Consensus 75 ~~Pt~~~~-~~G~~~~ 89 (109)
T PRK09381 75 GIPTLLLF-KNGEVAA 89 (109)
T ss_pred cCCEEEEE-eCCeEEE
Confidence 99999999 6888775
|
|
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.4e-11 Score=98.18 Aligned_cols=70 Identities=30% Similarity=0.770 Sum_probs=62.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|.++++++++ ++.++.|+.+..+ .+++.|+|.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~-----------------------~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDENK-----------------------ELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTSH-----------------------HHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhccc-----------------------hhhhccCCC
Confidence 68999999999999999999999999999976 4888888887664 589999999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 437 GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~ 453 (569)
++|+++++ .+|+.+.+
T Consensus 71 ~~Pt~~~~-~~g~~~~~ 86 (103)
T PF00085_consen 71 SVPTIIFF-KNGKEVKR 86 (103)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred CCCEEEEE-ECCcEEEE
Confidence 99999999 67777765
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.1e-11 Score=99.13 Aligned_cols=69 Identities=16% Similarity=0.425 Sum_probs=57.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHH-hcC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE-LFK 114 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 114 (569)
+|+ ++|.||++||++|+++.|.+.++++.++.. ++.++.|++|.+.. .++. .|+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~-~~~~~~vd~d~~~~-----------------------~~~~~~~~ 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS-NVKVAKFNADGEQR-----------------------EFAKEELQ 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECCccch-----------------------hhHHhhcC
Confidence 578 999999999999999999999999999854 48899999886311 3554 599
Q ss_pred CCCccEEEEECCCCc
Q 008336 115 VMGIPHLVILDENGK 129 (569)
Q Consensus 115 v~~~P~~~lid~~G~ 129 (569)
++++||+++++++++
T Consensus 76 v~~~Pti~~f~~~~~ 90 (109)
T cd02993 76 LKSFPTILFFPKNSR 90 (109)
T ss_pred CCcCCEEEEEcCCCC
Confidence 999999999977654
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.5e-11 Score=99.30 Aligned_cols=74 Identities=23% Similarity=0.398 Sum_probs=59.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
.|+ +||+||++||++|+.+.|.+ .++.+.+.+ ++.++.|+++.+.. ....+++.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~--------------------~~~~~~~~ 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDP--------------------EITALLKR 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCH--------------------HHHHHHHH
Confidence 578 99999999999999999988 577777764 48888988875422 11368899
Q ss_pred cCCCCccEEEEECC-CCcEEE
Q 008336 113 FKVMGIPHLVILDE-NGKVLS 132 (569)
Q Consensus 113 ~~v~~~P~~~lid~-~G~i~~ 132 (569)
|++.++|+++++++ +|+++.
T Consensus 68 ~~i~~~Pti~~~~~~~g~~~~ 88 (104)
T cd02953 68 FGVFGPPTYLFYGPGGEPEPL 88 (104)
T ss_pred cCCCCCCEEEEECCCCCCCCc
Confidence 99999999999987 787654
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.6e-11 Score=99.34 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=62.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++|+|+||++||++|+.+.|.|.+++++++ ++.++-|+++..+ .+++.|+|.
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~----~i~f~~Vd~~~~~-----------------------~l~~~~~v~ 74 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHL----ETKFIKVNAEKAP-----------------------FLVEKLNIK 74 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcC----CCEEEEEEcccCH-----------------------HHHHHCCCc
Confidence 5799999999999999999999999998875 3688888887665 489999999
Q ss_pred CccEEEEECCCCcEEEccc
Q 008336 437 GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~ 455 (569)
++||++++ ++|+.+.+..
T Consensus 75 ~vPt~l~f-k~G~~v~~~~ 92 (113)
T cd02989 75 VLPTVILF-KNGKTVDRIV 92 (113)
T ss_pred cCCEEEEE-ECCEEEEEEE
Confidence 99999999 7999988743
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.2e-11 Score=99.92 Aligned_cols=69 Identities=30% Similarity=0.496 Sum_probs=58.9
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.|+ ++|+|||+||++|+++.|.+.++++.+.. .+.++.|+++.+.. ..+++.|+|
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~----------------------~~~~~~~~i 72 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKN----------------------KPLCGKYGV 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCcccc----------------------HHHHHHcCC
Confidence 477 99999999999999999999999999864 48889999886321 358899999
Q ss_pred CCccEEEEECCCCc
Q 008336 116 MGIPHLVILDENGK 129 (569)
Q Consensus 116 ~~~P~~~lid~~G~ 129 (569)
.++|+++++++++.
T Consensus 73 ~~~Pt~~~~~~~~~ 86 (109)
T cd03002 73 QGFPTLKVFRPPKK 86 (109)
T ss_pred CcCCEEEEEeCCCc
Confidence 99999999977663
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.1e-11 Score=100.33 Aligned_cols=69 Identities=10% Similarity=0.161 Sum_probs=57.3
Q ss_pred EEEEEecCCCHh--hH--hhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 40 IGLYFSASWCGP--CQ--RFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 40 vlv~F~a~wC~~--C~--~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+|++|||+||++ |+ .+.|.+.+++.++-..+++.++.|++|.++ .+++.|+|
T Consensus 30 vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~------------------------~La~~~~I 85 (120)
T cd03065 30 CLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA------------------------KVAKKLGL 85 (120)
T ss_pred EEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH------------------------HHHHHcCC
Confidence 888899999976 99 778888888887732335999999999774 49999999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
+++||++++ ++|+++..
T Consensus 86 ~~iPTl~lf-k~G~~v~~ 102 (120)
T cd03065 86 DEEDSIYVF-KDDEVIEY 102 (120)
T ss_pred ccccEEEEE-ECCEEEEe
Confidence 999999999 68987643
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=109.71 Aligned_cols=71 Identities=25% Similarity=0.533 Sum_probs=59.6
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.++++++++++. +.+..|+++..+ .+++.|+|+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~~-----------------------~l~~~~~I~ 105 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRAL-----------------------NLAKRFAIK 105 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCcccH-----------------------HHHHHcCCC
Confidence 579999999999999999999999999998753 666666655443 589999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||+++++ +|+++...
T Consensus 106 ~~PTl~~f~-~G~~v~~~ 122 (224)
T PTZ00443 106 GYPTLLLFD-KGKMYQYE 122 (224)
T ss_pred cCCEEEEEE-CCEEEEee
Confidence 999999995 78877653
|
|
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.2e-11 Score=98.56 Aligned_cols=67 Identities=24% Similarity=0.562 Sum_probs=57.2
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCC-CCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~-g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (569)
++|+|||+||++|+.++|.+.+++++++.. ..+.++.|+++... .+++.|+|.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~------------------------~~~~~~~v~~~ 74 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR------------------------ELCSEFQVRGY 74 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh------------------------hhHhhcCCCcC
Confidence 999999999999999999999999999752 25888888887553 48889999999
Q ss_pred cEEEEECCCCcEE
Q 008336 119 PHLVILDENGKVL 131 (569)
Q Consensus 119 P~~~lid~~G~i~ 131 (569)
|+++++ ++|+.+
T Consensus 75 Pt~~~~-~~g~~~ 86 (102)
T cd03005 75 PTLLLF-KDGEKV 86 (102)
T ss_pred CEEEEE-eCCCee
Confidence 999999 677654
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-11 Score=100.62 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=60.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|+++++++. ++.++.|+++.. .+++.|+|+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~----~v~f~~vd~~~~------------------------~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP----ETKFVKINAEKA------------------------FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CcEEEEEEchhh------------------------HHHHhcCCC
Confidence 5899999999999999999999999999875 356676666533 378999999
Q ss_pred CccEEEEECCCCcEEEccch
Q 008336 437 GIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~~ 456 (569)
++||++++ ++|+.+.+..+
T Consensus 76 ~~Pt~~~f-~~G~~v~~~~G 94 (113)
T cd02957 76 VLPTLLVY-KNGELIDNIVG 94 (113)
T ss_pred cCCEEEEE-ECCEEEEEEec
Confidence 99999999 78999887543
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=100.62 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=62.8
Q ss_pred CCC-c-EEEEEecCCCHhhHhhHHHHH---HHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 36 LKG-K-IGLYFSASWCGPCQRFTPILA---EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 36 ~~g-k-vlv~F~a~wC~~C~~~~p~l~---~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
-.| | ++|+|||+||++|+.+.|.+. .+.+.+.+ ++.++.|+++.+.... .| .. . ......++
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~-~~-~~--------~-~~~~~~l~ 77 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVT-DF-DG--------E-ALSEKELA 77 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceee-cc-CC--------C-CccHHHHH
Confidence 367 8 999999999999999999885 56556653 4889999988654311 11 00 0 01234788
Q ss_pred HhcCCCCccEEEEECCC-CcEEEc
Q 008336 111 ELFKVMGIPHLVILDEN-GKVLSD 133 (569)
Q Consensus 111 ~~~~v~~~P~~~lid~~-G~i~~~ 133 (569)
..|++.++|++++++++ |+++.+
T Consensus 78 ~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 78 RKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred HHcCCccccEEEEEcCCCCceeEE
Confidence 99999999999999998 788763
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=95.10 Aligned_cols=71 Identities=21% Similarity=0.414 Sum_probs=61.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.+.++++++.++ +.++.|+.|..+ ++++.++|.
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~~-----------------------~l~~~~~v~ 66 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDEDQ-----------------------EIAEAAGIM 66 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCH-----------------------HHHHHCCCe
Confidence 789999999999999999999999999888643 788888877654 478899999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++|+++++ ++|+++.+.
T Consensus 67 ~vPt~~i~-~~g~~v~~~ 83 (97)
T cd02949 67 GTPTVQFF-KDKELVKEI 83 (97)
T ss_pred eccEEEEE-ECCeEEEEE
Confidence 99999999 589988763
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=100.10 Aligned_cols=70 Identities=31% Similarity=0.701 Sum_probs=60.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.++++++.. ++.++.|+++... .+++.|+|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~V 104 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAER------------------------ELSARFRI 104 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCH------------------------HHHHhcCC
Confidence 478 99999999999999999999999998764 4888888887653 48899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
.++|+++++ ++|+++..
T Consensus 105 ~~~Ptlii~-~~G~~v~~ 121 (139)
T PRK10996 105 RSIPTIMIF-KNGQVVDM 121 (139)
T ss_pred CccCEEEEE-ECCEEEEE
Confidence 999999988 58987753
|
|
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-10 Score=105.57 Aligned_cols=71 Identities=24% Similarity=0.464 Sum_probs=56.7
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (569)
++|.||||||+||+++.|.+.+.--++++.| .+.|-.+++..- ..++..|+|+++
T Consensus 46 W~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f------------------------~aiAnefgiqGY 101 (468)
T KOG4277|consen 46 WFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF------------------------PAIANEFGIQGY 101 (468)
T ss_pred EEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc------------------------hhhHhhhccCCC
Confidence 9999999999999999999999999998877 344444333322 358899999999
Q ss_pred cEEEEECCCCcEEEcCC
Q 008336 119 PHLVILDENGKVLSDGG 135 (569)
Q Consensus 119 P~~~lid~~G~i~~~~~ 135 (569)
||+.++ ++|-.+.+.|
T Consensus 102 PTIk~~-kgd~a~dYRG 117 (468)
T KOG4277|consen 102 PTIKFF-KGDHAIDYRG 117 (468)
T ss_pred ceEEEe-cCCeeeecCC
Confidence 999999 6676665544
|
|
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=96.50 Aligned_cols=70 Identities=23% Similarity=0.520 Sum_probs=58.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
++++++|.||++||++|+.+.+.|+++++.++.. .++.++.++++..+ .+++.|+|
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~-----------------------~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-PDIVLAKVDATAEK-----------------------DLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-CceEEEEEEccchH-----------------------HHHHhCCC
Confidence 4899999999999999999999999999998753 13666666665443 58899999
Q ss_pred CCccEEEEECCCCc
Q 008336 436 SGIPMLVAIGPSGR 449 (569)
Q Consensus 436 ~~~Pt~~lid~~G~ 449 (569)
+++|+++++++++.
T Consensus 68 ~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 68 SGFPTIKFFPKGKK 81 (102)
T ss_pred CcCCEEEEecCCCc
Confidence 99999999987776
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-10 Score=96.47 Aligned_cols=82 Identities=12% Similarity=0.171 Sum_probs=57.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
.+|+|+|+|+++||++|+.+.+.. .++.+.+.. ++.+|.|+.+..++..+.+.+ .+...
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~~~~---------------~~~~~ 75 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKIYMN---------------AAQAM 75 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHHHHH---------------HHHHh
Confidence 489999999999999999998742 244555433 377777766655432211111 12336
Q ss_pred cCCCCccEEEEECCCCcEEEccc
Q 008336 433 FKVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
|++.++|+++++|++|++++..+
T Consensus 76 ~~~~G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 76 TGQGGWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred cCCCCCCEEEEECCCCCEEeeee
Confidence 79999999999999999998853
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.9e-11 Score=109.03 Aligned_cols=107 Identities=11% Similarity=0.121 Sum_probs=78.5
Q ss_pred CEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCC
Q 008336 358 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 437 (569)
Q Consensus 358 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~ 437 (569)
..++++|||+||++|+.+.|.|.++.++++ ++.++.|+.| |+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~~F~~V~~d-------------------------------~~V~~ 62 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SLEFYVVNLA-------------------------------DANNE 62 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC----CcEEEEEccc-------------------------------cCccc
Confidence 568999999999999999999999999885 2555555321 89999
Q ss_pred ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCcc-----cccccccceeeecccCeeecc
Q 008336 438 IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN-----VKHALHEHELVLDRCGVYSCD 512 (569)
Q Consensus 438 ~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~c~ 512 (569)
+|+++++ ++|+++.+ +.+.+..+|...+.......+.. ++..-.+|++++.+++...|+
T Consensus 63 vPtfv~~-~~g~~i~r---------------~~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~p 126 (204)
T PTZ00062 63 YGVFEFY-QNSQLINS---------------LEGCNTSTLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTFP 126 (204)
T ss_pred ceEEEEE-ECCEEEee---------------eeCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCCC
Confidence 9999999 79999998 33444566666666665543322 222333899999999876555
Q ss_pred CCC
Q 008336 513 GCD 515 (569)
Q Consensus 513 ~C~ 515 (569)
.|.
T Consensus 127 ~C~ 129 (204)
T PTZ00062 127 FCR 129 (204)
T ss_pred CCh
Confidence 554
|
|
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=97.52 Aligned_cols=73 Identities=32% Similarity=0.621 Sum_probs=59.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ ++|+|||+||++|+.+.|.+.++++.+...+.+.++.++++.+.. ..+++.|+|
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----------------------~~~~~~~~i 73 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH----------------------DALKEEYNV 73 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc----------------------HHHHHhCCC
Confidence 467 999999999999999999999999999754457777788775211 358899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
+++|+++++ ++|+++.
T Consensus 74 ~~~Pt~~~~-~~g~~~~ 89 (104)
T cd02997 74 KGFPTFKYF-ENGKFVE 89 (104)
T ss_pred ccccEEEEE-eCCCeeE
Confidence 999998888 5777543
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-10 Score=93.97 Aligned_cols=84 Identities=32% Similarity=0.653 Sum_probs=67.9
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+||++||++|+.+.|.|.++++++.. ++.++.|+++... .+++.|+|.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENK------------------------ELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSH------------------------HHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccc------------------------hhhhccCCC
Confidence 57 99999999999999999999999999876 5899999998663 489999999
Q ss_pred CccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHH
Q 008336 117 GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKE 159 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (569)
++|+++++ ++|+...+ -.| +.+.+.|.++++
T Consensus 71 ~~Pt~~~~-~~g~~~~~-------~~g----~~~~~~l~~~i~ 101 (103)
T PF00085_consen 71 SVPTIIFF-KNGKEVKR-------YNG----PRNAESLIEFIE 101 (103)
T ss_dssp SSSEEEEE-ETTEEEEE-------EES----SSSHHHHHHHHH
T ss_pred CCCEEEEE-ECCcEEEE-------EEC----CCCHHHHHHHHH
Confidence 99999999 56666541 111 346666766654
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.8e-10 Score=94.74 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=60.2
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.++++++. ++.++.|+++... .+++.|+|
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~------------------------~l~~~~~v 73 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAP------------------------FLVEKLNI 73 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCH------------------------HHHHHCCC
Confidence 346 9999999999999999999999999875 3789999988764 48899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
.++|+++++ ++|+.+.+
T Consensus 74 ~~vPt~l~f-k~G~~v~~ 90 (113)
T cd02989 74 KVLPTVILF-KNGKTVDR 90 (113)
T ss_pred ccCCEEEEE-ECCEEEEE
Confidence 999999999 68888764
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-10 Score=96.99 Aligned_cols=67 Identities=15% Similarity=0.359 Sum_probs=57.8
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+||++||++|+.+.|.|.++++++. ++.++.|+++.. .+++.|+|.
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-------------------------~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-------------------------FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-------------------------HHHHhcCCC
Confidence 57 9999999999999999999999999985 367788877743 378899999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 117 GIPHLVILDENGKVLSD 133 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~ 133 (569)
++|+++++ ++|+.+.+
T Consensus 76 ~~Pt~~~f-~~G~~v~~ 91 (113)
T cd02957 76 VLPTLLVY-KNGELIDN 91 (113)
T ss_pred cCCEEEEE-ECCEEEEE
Confidence 99999999 78888764
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=97.94 Aligned_cols=79 Identities=22% Similarity=0.461 Sum_probs=63.2
Q ss_pred CCCEEEEEEec-------CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHH
Q 008336 356 AGKTILLYFSA-------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 428 (569)
Q Consensus 356 ~gk~vll~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 428 (569)
+|++|+|+||| +||++|+.+.|.|.++.++++++ +.++.|.+|..+ ...+...+
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~----------------~w~d~~~~ 80 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRP----------------YWRDPNNP 80 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCcc----------------cccCcchh
Confidence 47899999999 99999999999999999998743 788888887643 11122356
Q ss_pred HHHhcCCC-CccEEEEECCCCcEEEc
Q 008336 429 LSRKFKVS-GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 429 l~~~~~v~-~~Pt~~lid~~G~i~~~ 453 (569)
+...|+|. ++||+++++..++++..
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred hHhccCcccCCCEEEEEcCCceecch
Confidence 88999998 99999999766666554
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.3e-11 Score=115.74 Aligned_cols=88 Identities=20% Similarity=0.311 Sum_probs=68.9
Q ss_pred CCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchh
Q 008336 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSET 105 (569)
Q Consensus 27 ~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (569)
..+...+++++|+ +||+|||+||++|+.++|.|.+++++++ +.|++|++|..... .++....+
T Consensus 155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~~-----------~fp~~~~d- 218 (271)
T TIGR02740 155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPLP-----------GFPNARPD- 218 (271)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCccc-----------cCCcccCC-
Confidence 3445788999999 9999999999999999999999999873 88999999875321 11211222
Q ss_pred HHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 106 RDKLDELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 106 ~~~l~~~~~v~~~P~~~lid~~G~i~ 131 (569)
..+.+.|+|.++|+++|+|++|..+
T Consensus 219 -~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 219 -AGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred -HHHHHHcCCCcCCeEEEEECCCCEE
Confidence 3578999999999999999855433
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-10 Score=98.03 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=57.3
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
++ ++|+|||+||++|+.+.|.+.++++++++.. .+.+..|+++.+.. ..+++.|++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~----------------------~~~~~~~~i 76 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN----------------------VALCRDFGV 76 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh----------------------HHHHHhCCC
Confidence 46 9999999999999999999999999986532 47777777654322 358899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
+++|+++++. +|....
T Consensus 77 ~~~Pt~~lf~-~~~~~~ 92 (114)
T cd02992 77 TGYPTLRYFP-PFSKEA 92 (114)
T ss_pred CCCCEEEEEC-CCCccC
Confidence 9999999994 454443
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-10 Score=98.99 Aligned_cols=68 Identities=13% Similarity=0.308 Sum_probs=57.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ |+|.|||+||++|+.+.|.|.++++++++ .+.|+.|++|..+ .++..|+|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~------------------------dla~~y~I 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVP------------------------DFNTMYEL 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCH------------------------HHHHHcCc
Confidence 567 99999999999999999999999999864 3788999999875 48999999
Q ss_pred CCccEEEEECCCCcE
Q 008336 116 MGIPHLVILDENGKV 130 (569)
Q Consensus 116 ~~~P~~~lid~~G~i 130 (569)
++.|+++++=++|++
T Consensus 76 ~~~~t~~~ffk~g~~ 90 (142)
T PLN00410 76 YDPCTVMFFFRNKHI 90 (142)
T ss_pred cCCCcEEEEEECCeE
Confidence 988777744378873
|
|
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-10 Score=94.43 Aligned_cols=71 Identities=18% Similarity=0.449 Sum_probs=59.7
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|.++++++. ++.++.|+.+... .+++.|+++
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~~-----------------------~~~~~~~v~ 70 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDELS-----------------------EVAEKENIT 70 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcchH-----------------------HHHHHCCCc
Confidence 6899999999999999999999999888764 3667777665433 588999999
Q ss_pred CccEEEEECCCCcEEEccc
Q 008336 437 GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~ 455 (569)
++||++++ ++|+++.+..
T Consensus 71 ~~Pt~~~~-~~g~~~~~~~ 88 (98)
T PTZ00051 71 SMPTFKVF-KNGSVVDTLL 88 (98)
T ss_pred eeeEEEEE-eCCeEEEEEe
Confidence 99999888 7999988743
|
|
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.3e-10 Score=105.98 Aligned_cols=68 Identities=24% Similarity=0.505 Sum_probs=58.0
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+|||+||++|+.+.|.+.+++++++. .+.+..|+++... .+++.|+|+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~------------------------~l~~~~~I~ 105 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRAL------------------------NLAKRFAIK 105 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccH------------------------HHHHHcCCC
Confidence 56 99999999999999999999999999874 4777777776542 588999999
Q ss_pred CccEEEEECCCCcEEE
Q 008336 117 GIPHLVILDENGKVLS 132 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~ 132 (569)
++||+++++ +|+++.
T Consensus 106 ~~PTl~~f~-~G~~v~ 120 (224)
T PTZ00443 106 GYPTLLLFD-KGKMYQ 120 (224)
T ss_pred cCCEEEEEE-CCEEEE
Confidence 999999996 787654
|
|
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-10 Score=96.13 Aligned_cols=74 Identities=24% Similarity=0.462 Sum_probs=57.7
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.+.++++++++..+.+.+..++++.+. ...+++.|+|+
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~---------------------~~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE---------------------NVALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh---------------------hHHHHHhCCCC
Confidence 479999999999999999999999999998754233666666654332 23588999999
Q ss_pred CccEEEEECCCCcEEE
Q 008336 437 GIPMLVAIGPSGRTIT 452 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~ 452 (569)
++||++++. +|....
T Consensus 78 ~~Pt~~lf~-~~~~~~ 92 (114)
T cd02992 78 GYPTLRYFP-PFSKEA 92 (114)
T ss_pred CCCEEEEEC-CCCccC
Confidence 999999994 555433
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-10 Score=99.30 Aligned_cols=77 Identities=31% Similarity=0.586 Sum_probs=57.3
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
..+..++| +||+|||+||++|+.+.|.+.+........ ..++.|++|.+.+ ...
T Consensus 13 ~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~--~~fv~v~vd~~~~-----------------------~~~ 67 (117)
T cd02959 13 KEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS--HNFVMVNLEDDEE-----------------------PKD 67 (117)
T ss_pred HHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc--CcEEEEEecCCCC-----------------------chh
Confidence 44555788 999999999999999999999976654322 3455666664422 234
Q ss_pred HhcCCCC--ccEEEEECCCCcEEEc
Q 008336 111 ELFKVMG--IPHLVILDENGKVLSD 133 (569)
Q Consensus 111 ~~~~v~~--~P~~~lid~~G~i~~~ 133 (569)
..|++.+ +|+++++|++|+++.+
T Consensus 68 ~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 68 EEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred hhcccCCCccceEEEECCCCCCchh
Confidence 5677775 9999999999998763
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-10 Score=93.97 Aligned_cols=70 Identities=17% Similarity=0.332 Sum_probs=61.4
Q ss_pred CCc-EEEEEecCC--CHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 37 KGK-IGLYFSASW--CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 37 ~gk-vlv~F~a~w--C~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
.|. ++|.|||+| ||+|+.+.|.|.++++++.+ .+.++.|++|..+ .++..|
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~------------------------~la~~f 79 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQ------------------------ALAARF 79 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCH------------------------HHHHHc
Confidence 345 999999997 99999999999999999874 3788899999774 499999
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 114 KVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 114 ~v~~~P~~~lid~~G~i~~~ 133 (569)
+|+++||++++ ++|+++..
T Consensus 80 ~V~sIPTli~f-kdGk~v~~ 98 (111)
T cd02965 80 GVLRTPALLFF-RDGRYVGV 98 (111)
T ss_pred CCCcCCEEEEE-ECCEEEEE
Confidence 99999999999 78988864
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-10 Score=93.02 Aligned_cols=70 Identities=26% Similarity=0.627 Sum_probs=60.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.+.|.++.+++.++ +.++.++.+.+. .+++.|+|.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDENP-----------------------DIAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCCH-----------------------HHHHHcCCC
Confidence 579999999999999999999999999888643 888888877654 478899999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 437 GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~ 453 (569)
++|+++++ ++|+++.+
T Consensus 68 ~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 68 SIPTLLLF-KNGKEVDR 83 (101)
T ss_pred cCCEEEEE-eCCcEeee
Confidence 99999999 78887765
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-10 Score=94.66 Aligned_cols=74 Identities=23% Similarity=0.536 Sum_probs=58.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.++++++.++.. ..+.++.++++... ...+++.|+|+
T Consensus 17 ~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~---------------------~~~~~~~~~i~ 74 (104)
T cd02997 17 EKHVLVMFYAPWCGHCKKMKPEFTKAATELKED-GKGVLAAVDCTKPE---------------------HDALKEEYNVK 74 (104)
T ss_pred CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC-CceEEEEEECCCCc---------------------cHHHHHhCCCc
Confidence 679999999999999999999999999998742 23566666665421 23588999999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 437 GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~ 453 (569)
++||++++ ++|+++.+
T Consensus 75 ~~Pt~~~~-~~g~~~~~ 90 (104)
T cd02997 75 GFPTFKYF-ENGKFVEK 90 (104)
T ss_pred cccEEEEE-eCCCeeEE
Confidence 99999988 67887655
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-10 Score=92.76 Aligned_cols=69 Identities=23% Similarity=0.540 Sum_probs=58.0
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+||++||++|+.+.|.|.++++++. .++.++.++.+.. ..+++.|++.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~--~~i~~~~vd~~~~------------------------~~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF--PSVLFLSIEAEEL------------------------PEISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC--CceEEEEEccccC------------------------HHHHHhcCCc
Confidence 67 9999999999999999999999999972 2578888776644 2588999999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 117 GIPHLVILDENGKVLSD 133 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~ 133 (569)
++|+++++ ++|+++.+
T Consensus 68 ~~Pt~~~~-~~g~~~~~ 83 (97)
T cd02984 68 AVPTFVFF-RNGTIVDR 83 (97)
T ss_pred cccEEEEE-ECCEEEEE
Confidence 99999999 57887754
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.3e-10 Score=101.77 Aligned_cols=119 Identities=26% Similarity=0.466 Sum_probs=92.3
Q ss_pred ccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCH-hhHhhHHHHHHHHHHhcCCC-CEEEEEEeCC---CCHHHHH
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG-DFEVIFVSGD---EDDEAFK 87 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~-~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d---~~~~~~~ 87 (569)
.....|+| +.+.+|+.+++++++|| +||+|..+.|| .|...+..|.++.+++.+.+ ++++++|++| ++++.++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~ 107 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLK 107 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHH
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHH
Confidence 45667889 66889999999999999 99999999998 89999999999999998764 7999999999 4578899
Q ss_pred HHHHhCCCcccccCC-chhHHHHHHhcCCC----------------CccEEEEECCCCcEEEc
Q 008336 88 GYFSKMPWLAVPFSD-SETRDKLDELFKVM----------------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~v~----------------~~P~~~lid~~G~i~~~ 133 (569)
+|.+.++..+..+.. ......+.+.|++. ....++|+|++|+++..
T Consensus 108 ~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 108 KYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp HHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred HHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 999987654443322 23345677777753 23577999999999864
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.1e-10 Score=92.85 Aligned_cols=69 Identities=28% Similarity=0.609 Sum_probs=58.0
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.+.++++++. ++.++.|+++.. ..+++.|++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~v 69 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDEL------------------------SEVAEKENI 69 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcch------------------------HHHHHHCCC
Confidence 466 9999999999999999999999999764 377888877754 258899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
.++|+++++ ++|+++..
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (98)
T PTZ00051 70 TSMPTFKVF-KNGSVVDT 86 (98)
T ss_pred ceeeEEEEE-eCCeEEEE
Confidence 999998888 78888754
|
|
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-10 Score=97.70 Aligned_cols=90 Identities=29% Similarity=0.516 Sum_probs=63.1
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHH---HhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYN---ELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~---~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
.|| ++|+||++|||+|+.+.+.+.+..+ .+++ ++.++.++++........++...+...+ ......+.+.
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~ 77 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNV----RLSNKELAQR 77 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSC----HHHHHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhh----hHHHHHHHHH
Confidence 578 9999999999999999999886433 3332 4889999998776655555554332111 1123479999
Q ss_pred cCCCCccEEEEECCCCcEEE
Q 008336 113 FKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i~~ 132 (569)
|+|.++|+++++|++|+++.
T Consensus 78 ~~v~gtPt~~~~d~~G~~v~ 97 (112)
T PF13098_consen 78 YGVNGTPTIVFLDKDGKIVY 97 (112)
T ss_dssp TT--SSSEEEECTTTSCEEE
T ss_pred cCCCccCEEEEEcCCCCEEE
Confidence 99999999999999999875
|
... |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.2e-10 Score=94.85 Aligned_cols=74 Identities=20% Similarity=0.489 Sum_probs=58.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCh-------hHHHHHHhcCCCcccccCchhhHHH
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ-------TSFDEFFKGMPWLALPFGDARKASL 429 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~-------~~~~~~~~~~~~~~~~~~~d~~~~l 429 (569)
|+.++|+|+++|||+|+.+.|.|.++.++. +..|..|++|.+. +.+. ++
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~~~~~~~~~~~-------------------~~ 78 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGSFEMSSLNDLT-------------------AF 78 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccCcCcccHHHHH-------------------HH
Confidence 678999999999999999999999998873 3678999998543 1222 34
Q ss_pred HHhc----CCCCccEEEEECCCCcEEEccc
Q 008336 430 SRKF----KVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 430 ~~~~----~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
.+.| +|.++||++++ ++|+.+.+..
T Consensus 79 ~~~~~i~~~i~~~PT~v~~-k~Gk~v~~~~ 107 (122)
T TIGR01295 79 RSRFGIPTSFMGTPTFVHI-TDGKQVSVRC 107 (122)
T ss_pred HHHcCCcccCCCCCEEEEE-eCCeEEEEEe
Confidence 4444 56779999999 8999998853
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.5e-10 Score=91.47 Aligned_cols=69 Identities=25% Similarity=0.592 Sum_probs=59.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||+.|+.+.|.+.++++++.+ ++.++.++.+.++ .+...+++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~------------------------~l~~~~~v 65 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQ------------------------EIAEAAGI 65 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCH------------------------HHHHHCCC
Confidence 467 99999999999999999999999999864 4888888888664 47889999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 66 ~~vPt~~i~-~~g~~v~ 81 (97)
T cd02949 66 MGTPTVQFF-KDKELVK 81 (97)
T ss_pred eeccEEEEE-ECCeEEE
Confidence 999999999 5788775
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.08 E-value=8e-10 Score=92.00 Aligned_cols=65 Identities=29% Similarity=0.571 Sum_probs=56.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|.+++++++.. +.++.++.+... .+++.|+|+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~~-----------------------~~~~~~~i~ 71 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVHQ-----------------------SLAQQYGVR 71 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcchH-----------------------HHHHHCCCC
Confidence 567999999999999999999999999998754 788888776543 588999999
Q ss_pred CccEEEEECCC
Q 008336 437 GIPMLVAIGPS 447 (569)
Q Consensus 437 ~~Pt~~lid~~ 447 (569)
++|++++++++
T Consensus 72 ~~P~~~~~~~~ 82 (103)
T cd03001 72 GFPTIKVFGAG 82 (103)
T ss_pred ccCEEEEECCC
Confidence 99999999644
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-09 Score=100.98 Aligned_cols=134 Identities=24% Similarity=0.450 Sum_probs=104.5
Q ss_pred ccee-cCCCCceecccCCCCEEEEEEecCCChh-HHhhhHHHHHHHHHHh-hcCCCeEEEEEeCCC---ChhHHHHHHh-
Q 008336 340 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIK-ERNESLEVVFISSDR---DQTSFDEFFK- 412 (569)
Q Consensus 340 ~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~-~~~~~~~vv~is~d~---~~~~~~~~~~- 412 (569)
+|.+ +.+|+.+++..++||+++|+|..+.||. |..++..|.++.+++. ....++.+++|++|. +++.+++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 6877 9999999999999999999999999996 9999999999999998 556789999999984 5677888888
Q ss_pred cC--CCcccccCchhhHHHHHhcCCCC---------------ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHH
Q 008336 413 GM--PWLALPFGDARKASLSRKFKVSG---------------IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 475 (569)
Q Consensus 413 ~~--~~~~~~~~~d~~~~l~~~~~v~~---------------~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~ 475 (569)
.. .|..+....+...++++.|+|.. ...++++|++|+++..... + +. -+
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~------~-------~~-~~ 194 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDY------G-------EP-PE 194 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecC------C-------CC-hH
Confidence 22 25555555666778888888763 2468899999999887321 1 11 35
Q ss_pred HHHHHhhhhhcC
Q 008336 476 EIDGQYNEMAKG 487 (569)
Q Consensus 476 ~l~~~l~~l~~~ 487 (569)
++.+.++.++++
T Consensus 195 ~i~~~l~~l~~~ 206 (207)
T COG1999 195 EIAADLKKLLKE 206 (207)
T ss_pred HHHHHHHHHhhc
Confidence 566777766543
|
|
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.2e-10 Score=92.95 Aligned_cols=68 Identities=25% Similarity=0.551 Sum_probs=58.4
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-CHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
.++ ++|.||++||++|+.+.|.+.++++.++..+++.++.++++. . ..+++.|+
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------------------------~~~~~~~~ 72 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN------------------------KDLAKKYG 72 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc------------------------hhhHHhCC
Confidence 356 999999999999999999999999999744458888888876 3 25889999
Q ss_pred CCCccEEEEECCCC
Q 008336 115 VMGIPHLVILDENG 128 (569)
Q Consensus 115 v~~~P~~~lid~~G 128 (569)
|.++|++++++++|
T Consensus 73 i~~~P~~~~~~~~~ 86 (105)
T cd02998 73 VSGFPTLKFFPKGS 86 (105)
T ss_pred CCCcCEEEEEeCCC
Confidence 99999999997665
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=99.69 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=60.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++|||.||++||++|+.+.|.|.++++++. .+.++-|+++.. .++..|+|+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~~------------------------~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASAT------------------------GASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccch------------------------hhHHhCCCC
Confidence 4599999999999999999999999999874 367777766632 378899999
Q ss_pred CccEEEEECCCCcEEEccch
Q 008336 437 GIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~~ 456 (569)
++||++++ ++|+++.+-.+
T Consensus 135 ~vPTllly-k~G~~v~~~vG 153 (175)
T cd02987 135 ALPALLVY-KGGELIGNFVR 153 (175)
T ss_pred CCCEEEEE-ECCEEEEEEec
Confidence 99999999 89999987543
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=91.86 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=54.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
++.++|+||++||++|+.+.|.|+++...+ + .+.++.|+.|..+ ++++.|+|.
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~~~-----------------------~l~~~~~v~ 74 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDEDK-----------------------EKAEKYGVE 74 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCcCH-----------------------HHHHHcCCC
Confidence 567899999999999999999999998775 3 3788888888654 488999999
Q ss_pred CccEEEEECC
Q 008336 437 GIPMLVAIGP 446 (569)
Q Consensus 437 ~~Pt~~lid~ 446 (569)
++||+++++.
T Consensus 75 ~vPt~~i~~~ 84 (113)
T cd02975 75 RVPTTIFLQD 84 (113)
T ss_pred cCCEEEEEeC
Confidence 9999999964
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=90.62 Aligned_cols=64 Identities=23% Similarity=0.465 Sum_probs=55.3
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|.||++||++|+.+.|.+.++++++.. .+.++.++++... .+++.|+|+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~------------------------~~~~~~~i~ 71 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQ------------------------SLAQQYGVR 71 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchH------------------------HHHHHCCCC
Confidence 56 99999999999999999999999999864 4888888887553 588999999
Q ss_pred CccEEEEECCC
Q 008336 117 GIPHLVILDEN 127 (569)
Q Consensus 117 ~~P~~~lid~~ 127 (569)
++|++++++.+
T Consensus 72 ~~P~~~~~~~~ 82 (103)
T cd03001 72 GFPTIKVFGAG 82 (103)
T ss_pred ccCEEEEECCC
Confidence 99999999643
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.1e-09 Score=112.50 Aligned_cols=185 Identities=17% Similarity=0.212 Sum_probs=114.3
Q ss_pred CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCC
Q 008336 48 WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN 127 (569)
Q Consensus 48 wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~ 127 (569)
-+.......+.+.+++++++.+ +.++.++.+.... .+.+.||+..+|++.+.+.+
T Consensus 258 ~~~~~~~~~~~~~~~A~~~~~~--~~f~~vd~~~~~~-----------------------~~~~~~gi~~~P~~~i~~~~ 312 (477)
T PTZ00102 258 TTEDYDKYKSVVRKVARKLREK--YAFVWLDTEQFGS-----------------------HAKEHLLIEEFPGLAYQSPA 312 (477)
T ss_pred CHHHHHHHHHHHHHHHHhccCc--eEEEEEechhcch-----------------------hHHHhcCcccCceEEEEcCC
Confidence 4566667889999999999753 6666666553211 25678999999998887655
Q ss_pred CcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccc-cCCCceeecCCCceeeec-cccCcEEEEEEe
Q 008336 128 GKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLT-SHSRDFVISSDGRKISVS-DLEGKTIGLYFS 205 (569)
Q Consensus 128 G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~-~~~~d~~~~~~~~~~~~~-~~~gk~v~l~f~ 205 (569)
|+.... .. ...-.+.+.|..++......+....+.+-.. ......+....++.+... ...|+.++++|+
T Consensus 313 ~~y~~~-------~~--~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~ 383 (477)
T PTZ00102 313 GRYLLP-------PA--KESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIY 383 (477)
T ss_pred cccCCC-------cc--ccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEE
Confidence 532211 00 0001356677777765432211111111100 001112333344444433 346899999999
Q ss_pred cCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccCCCceEEEEC
Q 008336 206 MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIG 285 (569)
Q Consensus 206 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~~~Ptlvi~~ 285 (569)
++||++|+.+.|.+.+++..++..+ . +.++.+|.+. ...+++.|+++++||+++++
T Consensus 384 a~wC~~C~~~~p~~~~~a~~~~~~~-~--v~~~~id~~~---------------------~~~~~~~~~v~~~Pt~~~~~ 439 (477)
T PTZ00102 384 APWCGHCKNLEPVYNELGEKYKDND-S--IIVAKMNGTA---------------------NETPLEEFSWSAFPTILFVK 439 (477)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccCC-c--EEEEEEECCC---------------------CccchhcCCCcccCeEEEEE
Confidence 9999999999999999988876532 3 4444455432 23456789999999999998
Q ss_pred CCCCc
Q 008336 286 PDGKT 290 (569)
Q Consensus 286 ~~g~~ 290 (569)
.+++.
T Consensus 440 ~~~~~ 444 (477)
T PTZ00102 440 AGERT 444 (477)
T ss_pred CCCcc
Confidence 77653
|
|
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=90.43 Aligned_cols=66 Identities=23% Similarity=0.543 Sum_probs=55.2
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+||++||++|+.+.|.+.++++.++...++.+..++++.. .++..+++.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------------------------~~~~~~~~~ 72 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-------------------------DVPSEFVVD 72 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-------------------------hhhhhccCC
Confidence 57 9999999999999999999999999997643588888887743 356778899
Q ss_pred CccEEEEECCCC
Q 008336 117 GIPHLVILDENG 128 (569)
Q Consensus 117 ~~P~~~lid~~G 128 (569)
++|+++++.+++
T Consensus 73 ~~Pt~~~~~~~~ 84 (104)
T cd02995 73 GFPTILFFPAGD 84 (104)
T ss_pred CCCEEEEEcCCC
Confidence 999999995444
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=98.43 Aligned_cols=88 Identities=14% Similarity=0.190 Sum_probs=67.3
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
+. |+|+||++||++|+.+.|.|.++++++. .+.++.|+++.. .++..|+|.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~-------------------------~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASAT-------------------------GASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccch-------------------------hhHHhCCCC
Confidence 46 9999999999999999999999999985 478888888743 377889999
Q ss_pred CccEEEEECCCCcEEEcC-CcceeecccCCCCCccHHHHHHHHH
Q 008336 117 GIPHLVILDENGKVLSDG-GVEIIREYGVEGYPFTVERIKEMKE 159 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (569)
++||++++ ++|+++..- |. ...+.. .++...++.++.
T Consensus 135 ~vPTllly-k~G~~v~~~vG~---~~~~g~--~f~~~~le~~L~ 172 (175)
T cd02987 135 ALPALLVY-KGGELIGNFVRV---TEDLGE--DFDAEDLESFLV 172 (175)
T ss_pred CCCEEEEE-ECCEEEEEEech---HHhcCC--CCCHHHHHHHHH
Confidence 99999999 789888642 11 111211 566777766553
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.5e-09 Score=94.66 Aligned_cols=119 Identities=26% Similarity=0.442 Sum_probs=91.9
Q ss_pred cccccCccCCceec-C-CCc---eeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC--
Q 008336 12 QSLLSSSARDFLIR-S-NGD---QVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED-- 82 (569)
Q Consensus 12 ~~~~g~~~pdf~~~-~-~g~---~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~-- 82 (569)
..++|..+|+|..+ . .|. +++++++.|| ++|.|| +...+.|..++..+++.+.+|++.| ++|+++|+|..
T Consensus 2 ~~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g-~eVigvS~Ds~fs 80 (194)
T COG0450 2 MSLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG-VEVIGVSTDSVFS 80 (194)
T ss_pred ccccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC-CEEEEEecCcHHH
Confidence 36899999999553 3 553 9999999999 888887 7888999999999999999999986 99999999952
Q ss_pred HHHHHHHHHhCC-C--cccc-cCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 83 DEAFKGYFSKMP-W--LAVP-FSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 83 ~~~~~~~~~~~~-~--~~~~-~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
-..|.+.+.+.+ . ...| +.|.. .++++.||+. ++-.+||||++|+|+..
T Consensus 81 H~aW~~~~~~~~gi~~i~~PmiaD~~--~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~ 139 (194)
T COG0450 81 HKAWKATIREAGGIGKIKFPMIADPK--GEIARAYGVLHPEEGLALRGTFIIDPDGVIRHI 139 (194)
T ss_pred HHHHHhcHHhcCCccceecceEEcCc--hhHHHHcCCcccCCCcceeEEEEECCCCeEEEE
Confidence 334555554444 2 2222 33333 5899999984 45778999999999873
|
|
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=91.30 Aligned_cols=72 Identities=22% Similarity=0.484 Sum_probs=58.5
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-ChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-DQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
+++++|.||++||++|+.+.|.+.++++.++.. ..+.++.++.+. .. .+++.|+|
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~~-----------------------~~~~~~~i 73 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEANK-----------------------DLAKKYGV 73 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCcch-----------------------hhHHhCCC
Confidence 579999999999999999999999999998732 246677776665 32 58999999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 436 SGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~ 452 (569)
+++|++++++++|+...
T Consensus 74 ~~~P~~~~~~~~~~~~~ 90 (105)
T cd02998 74 SGFPTLKFFPKGSTEPV 90 (105)
T ss_pred CCcCEEEEEeCCCCCcc
Confidence 99999999977764433
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=92.24 Aligned_cols=77 Identities=22% Similarity=0.481 Sum_probs=60.1
Q ss_pred CCc-EEEEEec-------CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHH
Q 008336 37 KGK-IGLYFSA-------SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (569)
Q Consensus 37 ~gk-vlv~F~a-------~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (569)
+|+ ++|+||| +|||+|+.+.|.+.++.++++. ++.++.|+++..+. +.+. ...
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~---------------w~d~--~~~ 80 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPY---------------WRDP--NNP 80 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCccc---------------ccCc--chh
Confidence 578 9999999 9999999999999999999863 47899999886431 0000 135
Q ss_pred HHHhcCCC-CccEEEEECCCCcEEE
Q 008336 109 LDELFKVM-GIPHLVILDENGKVLS 132 (569)
Q Consensus 109 l~~~~~v~-~~P~~~lid~~G~i~~ 132 (569)
+...|+|. ++||+++++..++++.
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred hHhccCcccCCCEEEEEcCCceecc
Confidence 88899998 9999999965555543
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=89.91 Aligned_cols=68 Identities=25% Similarity=0.518 Sum_probs=58.1
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ ++|.||++||++|+.+.|.+.++++.++....+.++.++++.. ..+++.|+|
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------------------------~~~~~~~~i 69 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN------------------------NDLCSEYGV 69 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch------------------------HHHHHhCCC
Confidence 566 9999999999999999999999999986223588888887754 358899999
Q ss_pred CCccEEEEECCCC
Q 008336 116 MGIPHLVILDENG 128 (569)
Q Consensus 116 ~~~P~~~lid~~G 128 (569)
.++|++++++++|
T Consensus 70 ~~~Pt~~~~~~~~ 82 (101)
T cd02961 70 RGYPTIKLFPNGS 82 (101)
T ss_pred CCCCEEEEEcCCC
Confidence 9999999998775
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.6e-09 Score=85.90 Aligned_cols=68 Identities=31% Similarity=0.674 Sum_probs=58.5
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+||++||++|+.+.|.|.++.+++.. ++.++.|+++.+. .+.+.|++.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENP------------------------DIAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCH------------------------HHHHHcCCC
Confidence 56 99999999999999999999999988863 4899999988663 478899999
Q ss_pred CccEEEEECCCCcEEE
Q 008336 117 GIPHLVILDENGKVLS 132 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~ 132 (569)
++|+++++ ++|+++.
T Consensus 68 ~~P~~~~~-~~g~~~~ 82 (101)
T TIGR01068 68 SIPTLLLF-KNGKEVD 82 (101)
T ss_pred cCCEEEEE-eCCcEee
Confidence 99999999 6777654
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-09 Score=91.26 Aligned_cols=79 Identities=19% Similarity=0.418 Sum_probs=55.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc--
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF-- 113 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 113 (569)
.|+ ++|+|+++|||+|+.+.|.|.++.++. ++.+..|++|.+.. ....+...-..+.+.|
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGS-------------FEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccC-------------cCcccHHHHHHHHHHcCC
Confidence 466 899999999999999999999999872 36799999985421 0000000112344444
Q ss_pred --CCCCccEEEEECCCCcEEEc
Q 008336 114 --KVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 114 --~v~~~P~~~lid~~G~i~~~ 133 (569)
++.++||++++ ++|+.+.+
T Consensus 85 ~~~i~~~PT~v~~-k~Gk~v~~ 105 (122)
T TIGR01295 85 PTSFMGTPTFVHI-TDGKQVSV 105 (122)
T ss_pred cccCCCCCEEEEE-eCCeEEEE
Confidence 46679999999 78988764
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-09 Score=88.47 Aligned_cols=73 Identities=23% Similarity=0.481 Sum_probs=59.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|.||++||++|+.+.|.+.++++.++. ...+.++.++.+... .+++.|+|+
T Consensus 15 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~-----------------------~~~~~~~i~ 70 (101)
T cd02961 15 SKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDCTANN-----------------------DLCSEYGVR 70 (101)
T ss_pred CCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeeccchH-----------------------HHHHhCCCC
Confidence 56999999999999999999999999999851 124777777766543 589999999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 437 GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~ 453 (569)
++|++++++++|+.+.+
T Consensus 71 ~~Pt~~~~~~~~~~~~~ 87 (101)
T cd02961 71 GYPTIKLFPNGSKEPVK 87 (101)
T ss_pred CCCEEEEEcCCCccccc
Confidence 99999999877644443
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.3e-09 Score=89.24 Aligned_cols=86 Identities=24% Similarity=0.208 Sum_probs=61.4
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHH
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (569)
..+.-++| |||+|+|+||++|+.+.+.. .++.+.+.+ ++.+|.|+.+..++..+.+.+
T Consensus 9 ~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~---------------- 70 (124)
T cd02955 9 EKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMN---------------- 70 (124)
T ss_pred HHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHH----------------
Confidence 33445788 99999999999999987632 245555533 488888888766543333221
Q ss_pred HHHHhcCCCCccEEEEECCCCcEEEcCC
Q 008336 108 KLDELFKVMGIPHLVILDENGKVLSDGG 135 (569)
Q Consensus 108 ~l~~~~~v~~~P~~~lid~~G~i~~~~~ 135 (569)
.....|++.++|+++++|++|++++..+
T Consensus 71 ~~~~~~~~~G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 71 AAQAMTGQGGWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred HHHHhcCCCCCCEEEEECCCCCEEeeee
Confidence 2334679999999999999999998653
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-09 Score=88.27 Aligned_cols=67 Identities=22% Similarity=0.532 Sum_probs=54.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.+.++++.+++. ..+.+..++.+.. +++..+++.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~------------------------~~~~~~~~~ 72 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATAN------------------------DVPSEFVVD 72 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcch------------------------hhhhhccCC
Confidence 689999999999999999999999999998752 2466666665533 256778899
Q ss_pred CccEEEEECCCC
Q 008336 437 GIPMLVAIGPSG 448 (569)
Q Consensus 437 ~~Pt~~lid~~G 448 (569)
++|+++++.+++
T Consensus 73 ~~Pt~~~~~~~~ 84 (104)
T cd02995 73 GFPTILFFPAGD 84 (104)
T ss_pred CCCEEEEEcCCC
Confidence 999999995444
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-09 Score=90.05 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=53.1
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
++|+|||+||++|+.+.|.+.++++.+ + .+.+..|+.|..+ .++..|+|.++|
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~------------------------~l~~~~~v~~vP 77 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDK------------------------EKAEKYGVERVP 77 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCH------------------------HHHHHcCCCcCC
Confidence 889999999999999999999998875 2 4889999988664 488999999999
Q ss_pred EEEEECCC
Q 008336 120 HLVILDEN 127 (569)
Q Consensus 120 ~~~lid~~ 127 (569)
++++++.+
T Consensus 78 t~~i~~~g 85 (113)
T cd02975 78 TTIFLQDG 85 (113)
T ss_pred EEEEEeCC
Confidence 99999643
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-09 Score=109.35 Aligned_cols=71 Identities=18% Similarity=0.393 Sum_probs=58.2
Q ss_pred CCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 355 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 355 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
..++++||+|||+||++|+.+.|.|+++++++++. ++.++.|++|.+.. ...++.|+
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~--~v~~~kVdvD~~~~---------------------~~~~~~~~ 425 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS--GVKVAKFRADGDQK---------------------EFAKQELQ 425 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CcEEEEEECCCCcc---------------------HHHHHHcC
Confidence 35899999999999999999999999999999754 47888888886531 12346899
Q ss_pred CCCccEEEEECCCCc
Q 008336 435 VSGIPMLVAIGPSGR 449 (569)
Q Consensus 435 v~~~Pt~~lid~~G~ 449 (569)
|+++||++++. +|.
T Consensus 426 I~~~PTii~Fk-~g~ 439 (463)
T TIGR00424 426 LGSFPTILFFP-KHS 439 (463)
T ss_pred CCccceEEEEE-CCC
Confidence 99999999994 443
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.7e-09 Score=81.76 Aligned_cols=63 Identities=19% Similarity=0.385 Sum_probs=51.7
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcc
Q 008336 360 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP 439 (569)
Q Consensus 360 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P 439 (569)
.+..||++||++|+.+.|.|+++++.++.. +.++.|+.+.++ ++++.|+++++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~~vP 55 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMENP-----------------------QKAMEYGIMAVP 55 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccCH-----------------------HHHHHcCCccCC
Confidence 467899999999999999999999888643 788888877654 467889999999
Q ss_pred EEEEECCCCcEE
Q 008336 440 MLVAIGPSGRTI 451 (569)
Q Consensus 440 t~~lid~~G~i~ 451 (569)
++++ +|+.+
T Consensus 56 t~~~---~g~~~ 64 (82)
T TIGR00411 56 AIVI---NGDVE 64 (82)
T ss_pred EEEE---CCEEE
Confidence 9986 56643
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=94.60 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=64.7
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++|||.||++||++|+.+.|.|.+++.++. .+.++-|+++. ....|+++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~----~vkFvkI~ad~--------------------------~~~~~~i~ 151 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP----DTKFVKIISTQ--------------------------CIPNYPDK 151 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC----CCEEEEEEhHH--------------------------hHhhCCCC
Confidence 4699999999999999999999999999985 26666666541 24679999
Q ss_pred CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHH
Q 008336 437 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 477 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 477 (569)
++||++++ ++|+++.+-.+-. ..|+. -++..+++.+
T Consensus 152 ~lPTlliy-k~G~~v~~ivG~~--~~gg~--~~~~~~lE~~ 187 (192)
T cd02988 152 NLPTILVY-RNGDIVKQFIGLL--EFGGM--NTTMEDLEWL 187 (192)
T ss_pred CCCEEEEE-ECCEEEEEEeCch--hhCCC--CCCHHHHHHH
Confidence 99999999 8999998854321 12322 3555555444
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.2e-09 Score=87.62 Aligned_cols=98 Identities=12% Similarity=0.199 Sum_probs=65.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHH---HHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLI---DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
++|+|+|+|++.||++|+++...+- ++.+.+.. ++.+|-+..|.+.. .+. .
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~td~----------------------~~~-~ 75 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETTDK----------------------NLS-P 75 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccCCC----------------------CcC-c
Confidence 4899999999999999999988753 23333322 35555555543310 000 1
Q ss_pred cCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhh
Q 008336 433 FKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEM 484 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l 484 (569)
.+ .++||++|+|++|+++.+-. ..++...|-+.+.+++.|.+.+++.
T Consensus 76 ~g-~~vPtivFld~~g~vi~~i~----Gy~~~~~~~y~~~~~~~~~~~m~~a 122 (130)
T cd02960 76 DG-QYVPRIMFVDPSLTVRADIT----GRYSNRLYTYEPADIPLLIENMKKA 122 (130)
T ss_pred cC-cccCeEEEECCCCCCccccc----ccccCccceeCcCcHHHHHHHHHHH
Confidence 22 57999999999999998842 3455666777778887777766554
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.6e-09 Score=108.31 Aligned_cols=69 Identities=17% Similarity=0.366 Sum_probs=57.3
Q ss_pred CCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 36 ~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
.+++ +||+|||+||++|+.+.|.|.+++++++..+ +.++.|++|.+.. ....+.|+
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~-v~~~kVdvD~~~~----------------------~~~~~~~~ 425 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG-VKVAKFRADGDQK----------------------EFAKQELQ 425 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC-cEEEEEECCCCcc----------------------HHHHHHcC
Confidence 3677 9999999999999999999999999997654 8899999986532 12346899
Q ss_pred CCCccEEEEECCC
Q 008336 115 VMGIPHLVILDEN 127 (569)
Q Consensus 115 v~~~P~~~lid~~ 127 (569)
|.++||++++.++
T Consensus 426 I~~~PTii~Fk~g 438 (463)
T TIGR00424 426 LGSFPTILFFPKH 438 (463)
T ss_pred CCccceEEEEECC
Confidence 9999999999543
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=94.04 Aligned_cols=87 Identities=15% Similarity=0.250 Sum_probs=65.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ |+|+||++||++|+.+.|.|.+++.+|. .+.++.|+++. ....|++
T Consensus 101 ~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~---------------------------~~~~~~i 150 (192)
T cd02988 101 KDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQ---------------------------CIPNYPD 150 (192)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHH---------------------------hHhhCCC
Confidence 356 9999999999999999999999999985 37788777652 2467999
Q ss_pred CCccEEEEECCCCcEEEcC-CcceeecccCCCCCccHHHHHHHHH
Q 008336 116 MGIPHLVILDENGKVLSDG-GVEIIREYGVEGYPFTVERIKEMKE 159 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (569)
.++||++++ ++|+++..- |. ...|.. .++.+.++.++.
T Consensus 151 ~~lPTlliy-k~G~~v~~ivG~---~~~gg~--~~~~~~lE~~L~ 189 (192)
T cd02988 151 KNLPTILVY-RNGDIVKQFIGL---LEFGGM--NTTMEDLEWLLV 189 (192)
T ss_pred CCCCEEEEE-ECCEEEEEEeCc---hhhCCC--CCCHHHHHHHHH
Confidence 999999999 889888652 21 122222 566777766553
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=106.39 Aligned_cols=68 Identities=19% Similarity=0.447 Sum_probs=56.3
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH-hcC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR-KFK 434 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~-~~~ 434 (569)
+++++||+||++||++|+.+.|.|.+++++++.. ++.++.|++|.+. ..+++ .|+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~d~~~----------------------~~la~~~~~ 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRADGDQ----------------------KEFAKQELQ 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEECCCcc----------------------hHHHHhhCC
Confidence 5899999999999999999999999999998754 5888888877322 13665 699
Q ss_pred CCCccEEEEECCC
Q 008336 435 VSGIPMLVAIGPS 447 (569)
Q Consensus 435 v~~~Pt~~lid~~ 447 (569)
|+++||++++.++
T Consensus 420 I~~~PTil~f~~g 432 (457)
T PLN02309 420 LGSFPTILLFPKN 432 (457)
T ss_pred CceeeEEEEEeCC
Confidence 9999999999543
|
|
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.4e-08 Score=92.49 Aligned_cols=72 Identities=24% Similarity=0.488 Sum_probs=60.5
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.. |+|.|||.||+.++.++|.+.++++.++++- +-.+|...+|.+.+ ..++.+|.|
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e----------------------~~ia~ky~I 70 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE----------------------DDIADKYHI 70 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh----------------------hHHhhhhcc
Confidence 45 9999999999999999999999999887653 34567777776655 369999999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
..+||+.++ ++|.+..
T Consensus 71 ~KyPTlKvf-rnG~~~~ 86 (375)
T KOG0912|consen 71 NKYPTLKVF-RNGEMMK 86 (375)
T ss_pred ccCceeeee-eccchhh
Confidence 999999999 7898765
|
|
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-08 Score=105.67 Aligned_cols=70 Identities=29% Similarity=0.604 Sum_probs=58.5
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
...++|.||||||+||++++|.+++++..+++....+.+. .+|.+.+ ..++.+|+|+
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~La--kVDat~~---------------------~~~~~~y~v~ 98 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLA--KVDATEE---------------------SDLASKYEVR 98 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeE--Eeecchh---------------------hhhHhhhcCC
Confidence 5789999999999999999999999999999764444444 4555542 4699999999
Q ss_pred CccEEEEECCCCcE
Q 008336 437 GIPMLVAIGPSGRT 450 (569)
Q Consensus 437 ~~Pt~~lid~~G~i 450 (569)
++||+-++ ++|+.
T Consensus 99 gyPTlkiF-rnG~~ 111 (493)
T KOG0190|consen 99 GYPTLKIF-RNGRS 111 (493)
T ss_pred CCCeEEEE-ecCCc
Confidence 99999999 88885
|
|
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-08 Score=108.36 Aligned_cols=74 Identities=19% Similarity=0.454 Sum_probs=58.7
Q ss_pred CCCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 355 LAGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 355 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
.+||+|+|+|||+||++|+.+.+.+ .++.++++ ++.++.++++++.+ ...++.+
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~-------------------~~~~l~~ 528 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNA-------------------EDVALLK 528 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCCh-------------------hhHHHHH
Confidence 4589999999999999999998864 45566653 37777777765421 1346889
Q ss_pred hcCCCCccEEEEECCCCcEE
Q 008336 432 KFKVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 432 ~~~v~~~Pt~~lid~~G~i~ 451 (569)
+|++.++||++++|++|+++
T Consensus 529 ~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 529 HYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HcCCCCCCEEEEECCCCCCc
Confidence 99999999999999999985
|
|
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.2e-09 Score=94.46 Aligned_cols=72 Identities=31% Similarity=0.600 Sum_probs=59.3
Q ss_pred cCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHH
Q 008336 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (569)
++.-.+| |+|+|+|+||+||++..|.+..++.+|. ...++.|++|..+ ..+.
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp---~aVFlkVdVd~c~------------------------~taa 68 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP---GAVFLKVDVDECR------------------------GTAA 68 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc---ccEEEEEeHHHhh------------------------chhh
Confidence 4444678 9999999999999999999999999996 2667888887553 3678
Q ss_pred hcCCCCccEEEEECCCCcEEE
Q 008336 112 LFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 112 ~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+||.++||++++ ++|.-+.
T Consensus 69 ~~gV~amPTFiff-~ng~kid 88 (288)
T KOG0908|consen 69 TNGVNAMPTFIFF-RNGVKID 88 (288)
T ss_pred hcCcccCceEEEE-ecCeEee
Confidence 8999999999999 6775543
|
|
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.3e-08 Score=79.18 Aligned_cols=69 Identities=25% Similarity=0.597 Sum_probs=58.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.+.|.++.+. . .++.++.++.+... .+++.|++.
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~---~~~~~~~i~~~~~~-----------------------~~~~~~~v~ 62 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y---PKVKFVKVDVDENP-----------------------ELAEEYGVR 62 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH-C---CCceEEEEECCCCh-----------------------hHHHhcCcc
Confidence 38999999999999999999999998877 2 25888888887654 478899999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 437 GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~ 453 (569)
++|+++++ .+|+++..
T Consensus 63 ~~P~~~~~-~~g~~~~~ 78 (93)
T cd02947 63 SIPTFLFF-KNGKEVDR 78 (93)
T ss_pred cccEEEEE-ECCEEEEE
Confidence 99999999 56776665
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.78 E-value=4e-08 Score=77.91 Aligned_cols=61 Identities=26% Similarity=0.456 Sum_probs=50.7
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
+..||++||++|+...|.+.+++++++. ++.++.|+.+.++ .+.+.|++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~~vPt 56 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENP------------------------QKAMEYGIMAVPA 56 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCH------------------------HHHHHcCCccCCE
Confidence 5679999999999999999999998853 4888898888664 3677899999999
Q ss_pred EEEECCCCcE
Q 008336 121 LVILDENGKV 130 (569)
Q Consensus 121 ~~lid~~G~i 130 (569)
+++ +|+.
T Consensus 57 ~~~---~g~~ 63 (82)
T TIGR00411 57 IVI---NGDV 63 (82)
T ss_pred EEE---CCEE
Confidence 875 5653
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-08 Score=85.71 Aligned_cols=112 Identities=24% Similarity=0.355 Sum_probs=91.4
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc--EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK--IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 88 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk--vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~ 88 (569)
..+|+++||| +.+.+|..++|..+.|+ |+++|| +.-.|.|.++.-.|+.-|++++..+ .+|++++.|. ....+.
T Consensus 63 v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~-aeV~GlS~D~-s~sqKa 140 (211)
T KOG0855|consen 63 VNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG-AEVIGLSGDD-SASQKA 140 (211)
T ss_pred eecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC-ceEEeeccCc-hHHHHH
Confidence 3569999999 66889999999999887 666666 5566889999999999999998775 8999999994 566788
Q ss_pred HHHhCCCcccccCCchhHHHHHHhcCCCCcc-------EEEEECCCC
Q 008336 89 YFSKMPWLAVPFSDSETRDKLDELFKVMGIP-------HLVILDENG 128 (569)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P-------~~~lid~~G 128 (569)
|..+++.++..++|... ++.+.+|+...| ..+++|++|
T Consensus 141 F~sKqnlPYhLLSDpk~--e~ik~lGa~k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 141 FASKQNLPYHLLSDPKN--EVIKDLGAPKDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred hhhhccCCeeeecCcch--hHHHHhCCCCCCCCCcccceEEEEecCC
Confidence 88899988888887765 688888886544 567787665
|
|
| >KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-08 Score=85.68 Aligned_cols=113 Identities=21% Similarity=0.270 Sum_probs=91.1
Q ss_pred eecCCCCceecccCCCCEEEEEEec-CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--hhHHHHHHhcCCC--
Q 008336 342 VVGKNGGKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QTSFDEFFKGMPW-- 416 (569)
Q Consensus 342 ~~~~~g~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~--~~~~~~~~~~~~~-- 416 (569)
+++...+.++|++++||+|++.||. .+--.|..+.-.+.+.+.+|+.. +.+|+++|+|.. .-+|...-++.+.
T Consensus 18 VVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~--n~eVig~S~DS~fshlAW~ntprk~gGlg 95 (196)
T KOG0852|consen 18 VVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL--NTEVLGISTDSVFSHLAWINTPRKQGGLG 95 (196)
T ss_pred EEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc--CCeEEEEeccchhhhhhHhcCchhhCCcC
Confidence 4577889999999999999999994 45456999999999999999877 689999999964 2344444444433
Q ss_pred -cccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccch
Q 008336 417 -LALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 417 -~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~ 456 (569)
+++|++.|.+.++++.|||- .+..+++||++|.++.....
T Consensus 96 ~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~N 142 (196)
T KOG0852|consen 96 PLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITIN 142 (196)
T ss_pred ccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeec
Confidence 56999999999999999984 45689999999999886443
|
|
| >KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.6e-08 Score=89.48 Aligned_cols=116 Identities=24% Similarity=0.408 Sum_probs=93.8
Q ss_pred ccee-cCCCCceecccCCCCEEEEEEecCCChh-HHhhhHHHHHHHHHHhhcC-CCeEEEEEeCCC---ChhHHHHHHhc
Q 008336 340 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERN-ESLEVVFISSDR---DQTSFDEFFKG 413 (569)
Q Consensus 340 ~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~-~~~~vv~is~d~---~~~~~~~~~~~ 413 (569)
.|.| +.+|+.++-.+|.||.+|+||-.+.||. |..++..|.++.+++.++. ..+.=|+|++|. +.+.+++|+++
T Consensus 121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~e 200 (280)
T KOG2792|consen 121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSE 200 (280)
T ss_pred ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHh
Confidence 4666 9999999999999999999999999996 9999999999999987652 123358899985 67888999997
Q ss_pred CC--CcccccCchhhHHHHHhcCCCCc--c-------------EEEEECCCCcEEEccc
Q 008336 414 MP--WLALPFGDARKASLSRKFKVSGI--P-------------MLVAIGPSGRTITKEA 455 (569)
Q Consensus 414 ~~--~~~~~~~~d~~~~l~~~~~v~~~--P-------------t~~lid~~G~i~~~~~ 455 (569)
+. .+.++-..+.-..+++.|.|.-. | .+|||||+|..+...|
T Consensus 201 F~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~G 259 (280)
T KOG2792|consen 201 FHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYG 259 (280)
T ss_pred cChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhc
Confidence 74 35566666667788999988633 2 4789999999988644
|
|
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=80.89 Aligned_cols=113 Identities=20% Similarity=0.272 Sum_probs=85.8
Q ss_pred cccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHHHHH
Q 008336 339 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDEF 410 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~~~~ 410 (569)
-+|.+ +.+|++++|++++||++||.-.|+-|+.-. +...|+.||++|+++ ++.|+++.++. +.+++++|
T Consensus 6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~--Gf~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDK--GFEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred ccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhC--CcEEEeccccccccCCCCCHHHHHHH
Confidence 36766 899999999999999999999999999877 556799999999987 89999999863 45788888
Q ss_pred HhcCCCcccccCch------hhHHHHHhc-----------CCCCccEEEEECCCCcEEEcc
Q 008336 411 FKGMPWLALPFGDA------RKASLSRKF-----------KVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 411 ~~~~~~~~~~~~~d------~~~~l~~~~-----------~v~~~Pt~~lid~~G~i~~~~ 454 (569)
.+..-..+||+... ..+.|.+.+ .|..-=+-||||++|+|+.|.
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf 143 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRF 143 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEee
Confidence 87655577775431 112222221 122223789999999999994
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.8e-07 Score=98.57 Aligned_cols=186 Identities=16% Similarity=0.160 Sum_probs=113.7
Q ss_pred EecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC--CccEE
Q 008336 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM--GIPHL 121 (569)
Q Consensus 44 F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~ 121 (569)
|-......|......+.+++++++.. .+.++.++.+.. ..+++.+++. .+|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~a~~~~~~-~i~f~~~d~~~~------------------------~~~~~~~~~~~~~~P~~ 296 (462)
T TIGR01130 242 NVDESLDPFEELRNRFLEAAKKFRGK-FVNFAVADEEDF------------------------GRELEYFGLKAEKFPAV 296 (462)
T ss_pred EecCCchHHHHHHHHHHHHHHHCCCC-eEEEEEecHHHh------------------------HHHHHHcCCCccCCceE
Confidence 33445566888899999999888641 355555443322 3477788887 69999
Q ss_pred EEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccC-CCceeecCCCceeeecc-ccCcE
Q 008336 122 VILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSH-SRDFVISSDGRKISVSD-LEGKT 199 (569)
Q Consensus 122 ~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~-~~d~~~~~~~~~~~~~~-~~gk~ 199 (569)
++++.+|...+. + .....+.+.|.+++++...........+-.... ....+....++++.... ..++.
T Consensus 297 vi~~~~~~~~y~--------~--~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~ 366 (462)
T TIGR01130 297 AIQDLEGNKKYP--------M--DQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKD 366 (462)
T ss_pred EEEeCCcccccC--------C--CcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCe
Confidence 999877622211 1 111456777888876643222111111110000 11122333344443322 25789
Q ss_pred EEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccCCCc
Q 008336 200 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLP 279 (569)
Q Consensus 200 v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~~~P 279 (569)
++++|+++||++|+.+.|.+.++++.++.....+.++.++++.+. +.. +++.++|
T Consensus 367 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~------------------------~~~-~~i~~~P 421 (462)
T TIGR01130 367 VLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND------------------------VPP-FEVEGFP 421 (462)
T ss_pred EEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc------------------------cCC-CCccccC
Confidence 999999999999999999999999998763223444444443321 223 8899999
Q ss_pred eEEEECCCCC
Q 008336 280 TLVIIGPDGK 289 (569)
Q Consensus 280 tlvi~~~~g~ 289 (569)
+++++..+++
T Consensus 422 t~~~~~~~~~ 431 (462)
T TIGR01130 422 TIKFVPAGKK 431 (462)
T ss_pred EEEEEeCCCC
Confidence 9999976554
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.1e-08 Score=81.62 Aligned_cols=64 Identities=20% Similarity=0.301 Sum_probs=56.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
|+++++.|+++||++|..+.|.+.+++++++++ +.++.|+.|... .+++.|++.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~~-----------------------~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDFG-----------------------RHLEYFGLK 65 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhhH-----------------------HHHHHcCCC
Confidence 789999999999999999999999999999865 888888777543 488999999
Q ss_pred --CccEEEEECC
Q 008336 437 --GIPMLVAIGP 446 (569)
Q Consensus 437 --~~Pt~~lid~ 446 (569)
++|++++++.
T Consensus 66 ~~~~P~~~~~~~ 77 (103)
T cd02982 66 EEDLPVIAIINL 77 (103)
T ss_pred hhhCCEEEEEec
Confidence 9999999966
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.4e-08 Score=102.58 Aligned_cols=66 Identities=17% Similarity=0.401 Sum_probs=56.2
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-CCHHHHHHHHHhCCCcccccCCchhHHHHHH-hc
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-EDDEAFKGYFSKMPWLAVPFSDSETRDKLDE-LF 113 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 113 (569)
+++ +||+||||||++|+.+.|.|.++++++... ++.++.|++| ... .++. .|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~------------------------~la~~~~ 418 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQK------------------------EFAKQEL 418 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcch------------------------HHHHhhC
Confidence 577 999999999999999999999999999765 4999999988 432 3554 69
Q ss_pred CCCCccEEEEECCC
Q 008336 114 KVMGIPHLVILDEN 127 (569)
Q Consensus 114 ~v~~~P~~~lid~~ 127 (569)
+|.++||++++.++
T Consensus 419 ~I~~~PTil~f~~g 432 (457)
T PLN02309 419 QLGSFPTILLFPKN 432 (457)
T ss_pred CCceeeEEEEEeCC
Confidence 99999999999543
|
|
| >KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.2e-08 Score=84.88 Aligned_cols=111 Identities=21% Similarity=0.318 Sum_probs=91.4
Q ss_pred ccCCcccee-cCCCCceecccCCCC-EEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 335 VSGDLDFVV-GKNGGKVPVSDLAGK-TILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
....|||++ |.+|+.++|..+.|+ +||++|| +...|.|.++.-.+..-|++++.. +.+|+++|.|.. ...++|.
T Consensus 66 Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka--~aeV~GlS~D~s-~sqKaF~ 142 (211)
T KOG0855|consen 66 GDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA--GAEVIGLSGDDS-ASQKAFA 142 (211)
T ss_pred CCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc--CceEEeeccCch-HHHHHhh
Confidence 344699998 999999999999885 8888888 556677999999999999999865 689999999966 5677777
Q ss_pred hcCCCcccccCchhhHHHHHhcCCCCcc-------EEEEECCCCc
Q 008336 412 KGMPWLALPFGDARKASLSRKFKVSGIP-------MLVAIGPSGR 449 (569)
Q Consensus 412 ~~~~~~~~~~~~d~~~~l~~~~~v~~~P-------t~~lid~~G~ 449 (569)
+.+. +.+.++.|+.+++.+.+|+...| +.++++++|.
T Consensus 143 sKqn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~ 186 (211)
T KOG0855|consen 143 SKQN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV 186 (211)
T ss_pred hhcc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence 7776 66777899999999999987644 6777877653
|
|
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=88.42 Aligned_cols=113 Identities=24% Similarity=0.470 Sum_probs=88.9
Q ss_pred Cc-eecCCCceeecCCCCCc-EEEEEecCCCH-hhHhhHHHHHHHHHHhc-CCC-CEEEEEEeCC---CCHHHHHHHHH-
Q 008336 21 DF-LIRSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELS-RQG-DFEVIFVSGD---EDDEAFKGYFS- 91 (569)
Q Consensus 21 df-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~-~C~~~~p~l~~~~~~~~-~~g-~~~vv~v~~d---~~~~~~~~~~~- 91 (569)
+| +.+.+|+.+++.+++|| ++|+|.-+.|| .|..++..|.++.+++. ..+ ++++++|++| ++++.+++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 78 56789999999999999 99999999999 89999999999999998 444 7999999998 46778888888
Q ss_pred hCCCcccccCC-chhHHHHHHhcCCCC---------------ccEEEEECCCCcEEEc
Q 008336 92 KMPWLAVPFSD-SETRDKLDELFKVMG---------------IPHLVILDENGKVLSD 133 (569)
Q Consensus 92 ~~~~~~~~~~~-~~~~~~l~~~~~v~~---------------~P~~~lid~~G~i~~~ 133 (569)
.....+..+.. .+..+.+++.|++.. ...++++|++|+++..
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~ 186 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGT 186 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEE
Confidence 33333333332 445567888888752 2356889999988763
|
|
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.6e-08 Score=78.09 Aligned_cols=66 Identities=35% Similarity=0.697 Sum_probs=55.6
Q ss_pred c-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCC
Q 008336 39 K-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 117 (569)
Q Consensus 39 k-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 117 (569)
+ ++|+||++||++|+.+.+.+.++.+. . +++.++.++++... .+.+.|++.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~-~~~~~~~i~~~~~~------------------------~~~~~~~v~~ 63 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--Y-PKVKFVKVDVDENP------------------------ELAEEYGVRS 63 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--C-CCceEEEEECCCCh------------------------hHHHhcCccc
Confidence 6 99999999999999999999999887 2 35889999988653 4888999999
Q ss_pred ccEEEEECCCCcEEE
Q 008336 118 IPHLVILDENGKVLS 132 (569)
Q Consensus 118 ~P~~~lid~~G~i~~ 132 (569)
+|++++++ +|+++.
T Consensus 64 ~P~~~~~~-~g~~~~ 77 (93)
T cd02947 64 IPTFLFFK-NGKEVD 77 (93)
T ss_pred ccEEEEEE-CCEEEE
Confidence 99999994 566443
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.2e-08 Score=92.01 Aligned_cols=94 Identities=19% Similarity=0.359 Sum_probs=78.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
...|+|.|||.||+.++.+.|.+.+.+.+++++..+-.+|+.++|++++ ..++.+|.|.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e---------------------~~ia~ky~I~ 71 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE---------------------DDIADKYHIN 71 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh---------------------hHHhhhhccc
Confidence 5699999999999999999999999999999887777899999998864 4689999999
Q ss_pred CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhh
Q 008336 437 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 485 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~ 485 (569)
.+||+-++ .+|.+..+.-| ..+.+++|.+-|+..+
T Consensus 72 KyPTlKvf-rnG~~~~rEYR-------------g~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 72 KYPTLKVF-RNGEMMKREYR-------------GQRSVEALIEFIEKQL 106 (375)
T ss_pred cCceeeee-eccchhhhhhc-------------cchhHHHHHHHHHHHh
Confidence 99999999 89998887533 2345566666665544
|
|
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.8e-08 Score=75.24 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=47.5
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
.|.||++||++|+.+.|.++++.+++..+ +.++ .+|. .+ .+..|++.++|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~~--~v~~-~~-----------------------~a~~~~v~~vPt 52 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID---AEFE--KVTD-MN-----------------------EILEAGVTATPG 52 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC---eEEE--EeCC-HH-----------------------HHHHcCCCcCCE
Confidence 37899999999999999999999988543 5554 4442 21 356799999999
Q ss_pred EEEECCCCcEEEc
Q 008336 441 LVAIGPSGRTITK 453 (569)
Q Consensus 441 ~~lid~~G~i~~~ 453 (569)
+++ +|+++..
T Consensus 53 i~i---~G~~~~~ 62 (76)
T TIGR00412 53 VAV---DGELVIM 62 (76)
T ss_pred EEE---CCEEEEE
Confidence 999 7887744
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-08 Score=95.00 Aligned_cols=76 Identities=16% Similarity=0.327 Sum_probs=58.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
...++|.||||||++|+++.|.|.++--.+++- +..|-.-.+|.+.- ..++..|+|+
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdi--g~PikVGKlDaT~f---------------------~aiAnefgiq 99 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDI--GLPIKVGKLDATRF---------------------PAIANEFGIQ 99 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhc--CCceeecccccccc---------------------hhhHhhhccC
Confidence 458999999999999999999999998888865 34444444565431 2588999999
Q ss_pred CccEEEEECCCCcEEEccc
Q 008336 437 GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~ 455 (569)
|+||+.++..+..+-++++
T Consensus 100 GYPTIk~~kgd~a~dYRG~ 118 (468)
T KOG4277|consen 100 GYPTIKFFKGDHAIDYRGG 118 (468)
T ss_pred CCceEEEecCCeeeecCCC
Confidence 9999999955555555544
|
|
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.9e-08 Score=74.46 Aligned_cols=57 Identities=26% Similarity=0.597 Sum_probs=42.5
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
+++||++||++|+.+.|.|.++. +.++-|+.|..+ ++++.|+|+++||
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~~-----------------------~l~~~~~v~~~PT 49 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEGV-----------------------ELTAKHHIRSLPT 49 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCCH-----------------------HHHHHcCCceeCe
Confidence 78999999999999999886431 344445544433 5899999999999
Q ss_pred EEEECCCCcEEEc
Q 008336 441 LVAIGPSGRTITK 453 (569)
Q Consensus 441 ~~lid~~G~i~~~ 453 (569)
++ +|+.+.+
T Consensus 50 ~~----~g~~~~~ 58 (75)
T PHA02125 50 LV----NTSTLDR 58 (75)
T ss_pred EE----CCEEEEE
Confidence 87 4665544
|
|
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-07 Score=71.81 Aligned_cols=62 Identities=23% Similarity=0.305 Sum_probs=49.5
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|+++|||+|++..+.|.++.+... ++.+..++++.++ ++.+.|++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~------------------------~l~~~~~i~~vPt 55 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFP------------------------DLADEYGVMSVPA 55 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCH------------------------hHHHHcCCcccCE
Confidence 577999999999999999999976532 4888888887653 3778899999999
Q ss_pred EEEECCCCcEEE
Q 008336 121 LVILDENGKVLS 132 (569)
Q Consensus 121 ~~lid~~G~i~~ 132 (569)
+++ +|+++.
T Consensus 56 i~i---~~~~~~ 64 (67)
T cd02973 56 IVI---NGKVEF 64 (67)
T ss_pred EEE---CCEEEE
Confidence 765 466654
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=72.24 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=50.5
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcc
Q 008336 360 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP 439 (569)
Q Consensus 360 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P 439 (569)
-++.|+++||++|++..+.|+++.+.. .++.+..++++.++ ++++.|++.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~~~-----------------------~l~~~~~i~~vP 54 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAEFP-----------------------DLADEYGVMSVP 54 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEcccCH-----------------------hHHHHcCCcccC
Confidence 367899999999999999998886653 24788888777654 478899999999
Q ss_pred EEEEECCCCcEEEc
Q 008336 440 MLVAIGPSGRTITK 453 (569)
Q Consensus 440 t~~lid~~G~i~~~ 453 (569)
++++ +|+++..
T Consensus 55 ti~i---~~~~~~~ 65 (67)
T cd02973 55 AIVI---NGKVEFV 65 (67)
T ss_pred EEEE---CCEEEEe
Confidence 9865 4677664
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=80.96 Aligned_cols=98 Identities=17% Similarity=0.208 Sum_probs=61.4
Q ss_pred cCCCCCc-EEEEEecCCCHhhHhhHHHHH---HHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHH
Q 008336 33 LDSLKGK-IGLYFSASWCGPCQRFTPILA---EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~wC~~C~~~~p~l~---~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (569)
.+.-+|| ++|+|++.||++|+.+...+- ++.+.+. + ++.+|.+..|.+.. .
T Consensus 18 ~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-~-~Fv~V~l~~d~td~-----------------------~ 72 (130)
T cd02960 18 KAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-E-DFIMLNLVHETTDK-----------------------N 72 (130)
T ss_pred HHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-h-CeEEEEEEeccCCC-----------------------C
Confidence 3444788 999999999999999977652 3333332 2 36556666553310 0
Q ss_pred HHHhcCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHH
Q 008336 109 LDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQE 161 (569)
Q Consensus 109 l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 161 (569)
.. ..+ .++|+++++|++|+++.+- ...++...|-+.+.+|..+.+.-
T Consensus 73 ~~-~~g-~~vPtivFld~~g~vi~~i----~Gy~~~~~~~y~~~~~~~~~~~m 119 (130)
T cd02960 73 LS-PDG-QYVPRIMFVDPSLTVRADI----TGRYSNRLYTYEPADIPLLIENM 119 (130)
T ss_pred cC-ccC-cccCeEEEECCCCCCcccc----cccccCccceeCcCcHHHHHHHH
Confidence 00 122 5799999999999988752 33444455555566666655443
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-07 Score=77.95 Aligned_cols=117 Identities=23% Similarity=0.212 Sum_probs=94.7
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc--EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk--vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|+++|+| +.+.+.+.++++++.|| ++..|-+-.-|.|......|++.+.++. +..|+.||.| -+-+..+|+
T Consensus 19 ~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~---~~~Vl~IS~D-LPFAq~RfC 94 (158)
T COG2077 19 QVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG---NTVVLCISMD-LPFAQKRFC 94 (158)
T ss_pred ccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC---CcEEEEEeCC-ChhHHhhhh
Confidence 579999999 55689999999999999 6666778889999999999999998875 4789999998 678889999
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCC--Cc-------cEEEEECCCCcEEEcC
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVM--GI-------PHLVILDENGKVLSDG 134 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~--~~-------P~~~lid~~G~i~~~~ 134 (569)
...+...+....+-....+.+.||+. .. .+.+++|.+|+|++..
T Consensus 95 ~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~e 147 (158)
T COG2077 95 GAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSE 147 (158)
T ss_pred hhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEE
Confidence 99988755443333335688899862 33 4679999999999853
|
|
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-07 Score=73.38 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=46.1
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
-|.||++|||+|+.+.|.+.++.+++.. .+.++-| | +.+ .+..|++.++|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v--~-~~~------------------------~a~~~~v~~vPt 52 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKV--T-DMN------------------------EILEAGVTATPG 52 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEe--C-CHH------------------------HHHHcCCCcCCE
Confidence 3789999999999999999999999853 3565544 4 222 346699999999
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
+++ +|+++
T Consensus 53 i~i---~G~~~ 60 (76)
T TIGR00412 53 VAV---DGELV 60 (76)
T ss_pred EEE---CCEEE
Confidence 888 78766
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=78.47 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=48.9
Q ss_pred CCc-EEEEEec--CCCH---hhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 37 KGK-IGLYFSA--SWCG---PCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 37 ~gk-vlv~F~a--~wC~---~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
+.+ +||.||| |||+ +|.+++|++.+.+. ++.|..|++++-.+ ..+..|+
T Consensus 17 ~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~-------------------~~~~~L~ 71 (116)
T cd03007 17 KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGE-------------------KLNMELG 71 (116)
T ss_pred cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccc-------------------hhhHHHH
Confidence 456 9999999 9999 88888877776643 37788887753110 0114799
Q ss_pred HhcCCC--CccEEEEECCCC
Q 008336 111 ELFKVM--GIPHLVILDENG 128 (569)
Q Consensus 111 ~~~~v~--~~P~~~lid~~G 128 (569)
++|+|+ ++||++++. +|
T Consensus 72 ~~y~I~~~gyPTl~lF~-~g 90 (116)
T cd03007 72 ERYKLDKESYPVIYLFH-GG 90 (116)
T ss_pred HHhCCCcCCCCEEEEEe-CC
Confidence 999999 999999994 55
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.6e-08 Score=103.54 Aligned_cols=76 Identities=24% Similarity=0.483 Sum_probs=60.0
Q ss_pred cCCCCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHH
Q 008336 33 LDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (569)
.+..+|| |+|+|||+||++|+.+.+.. .++.++++ ++.++.++++++.+ ...+
T Consensus 469 ~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~--------------------~~~~ 525 (571)
T PRK00293 469 EAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNA--------------------EDVA 525 (571)
T ss_pred HHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCCh--------------------hhHH
Confidence 3445689 99999999999999988765 56666664 37788888875422 1246
Q ss_pred HHHhcCCCCccEEEEECCCCcEE
Q 008336 109 LDELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 109 l~~~~~v~~~P~~~lid~~G~i~ 131 (569)
+.+.|++.++|+++++|++|+++
T Consensus 526 l~~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 526 LLKHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HHHHcCCCCCCEEEEECCCCCCc
Confidence 88999999999999999999875
|
|
| >KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.5e-07 Score=84.80 Aligned_cols=116 Identities=21% Similarity=0.358 Sum_probs=92.3
Q ss_pred CCc-eecCCCceeecCCCCCc-EEEEEecCCCH-hhHhhHHHHHHHHHHhcCCC--CEEEEEEeCCC---CHHHHHHHHH
Q 008336 20 RDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG--DFEVIFVSGDE---DDEAFKGYFS 91 (569)
Q Consensus 20 pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~-~C~~~~p~l~~~~~~~~~~g--~~~vv~v~~d~---~~~~~~~~~~ 91 (569)
-+| |++.+|+.++-.++.|| +||+|-.+.|| .|..++..|.++.+++.++. .+.-++|++|. +.+.+..|++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~ 199 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS 199 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence 367 77899999999999999 99999999999 89999999999999987665 34468999985 7788999999
Q ss_pred hCCCcccccCCc-hhHHHHHHhcCCCCc--c-------------EEEEECCCCcEEEcCC
Q 008336 92 KMPWLAVPFSDS-ETRDKLDELFKVMGI--P-------------HLVILDENGKVLSDGG 135 (569)
Q Consensus 92 ~~~~~~~~~~~~-~~~~~l~~~~~v~~~--P-------------~~~lid~~G~i~~~~~ 135 (569)
++....+-+..+ +.-..+++.|.|.-- | .++|+|++|+++..-|
T Consensus 200 eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~G 259 (280)
T KOG2792|consen 200 EFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYG 259 (280)
T ss_pred hcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhc
Confidence 987655555443 334678888887422 2 3588999999886533
|
|
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-07 Score=72.25 Aligned_cols=50 Identities=32% Similarity=0.628 Sum_probs=39.7
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|||+||++|+.+.|.|.++. +.++-|+.+... ++++.|+|.++||
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~------------------------~l~~~~~v~~~PT 49 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGV------------------------ELTAKHHIRSLPT 49 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCH------------------------HHHHHcCCceeCe
Confidence 78999999999999999986542 345556655543 5889999999999
Q ss_pred EE
Q 008336 121 LV 122 (569)
Q Consensus 121 ~~ 122 (569)
++
T Consensus 50 ~~ 51 (75)
T PHA02125 50 LV 51 (75)
T ss_pred EE
Confidence 76
|
|
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.9e-07 Score=75.74 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=55.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHH-H--HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPK-L--IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
++|+++|+|+++||++|+.+... | .++.+.+.+. +.++.++++.. + ...+++.
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~-e--------------------~~~~~~~ 71 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSS-E--------------------GQRFLQS 71 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCc-c--------------------HHHHHHH
Confidence 48999999999999999998764 3 2344444432 55555544432 1 2468889
Q ss_pred cCCCCccEEEEECC-CCcEEEcc
Q 008336 433 FKVSGIPMLVAIGP-SGRTITKE 454 (569)
Q Consensus 433 ~~v~~~Pt~~lid~-~G~i~~~~ 454 (569)
|++.++|+++++|+ +|+++.+-
T Consensus 72 ~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 72 YKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred hCccCCCeEEEEeCccCcEeEEE
Confidence 99999999999999 89999873
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.1e-07 Score=74.97 Aligned_cols=64 Identities=31% Similarity=0.533 Sum_probs=56.9
Q ss_pred CcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccC
Q 008336 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (569)
Q Consensus 197 gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~ 276 (569)
+++++++|+++||++|..+.+.+.+++++++++ +.|+.+|.++ ...+++.|+|.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-----v~f~~vd~~~---------------------~~~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-----LLFVVVDADD---------------------FGRHLEYFGLK 65 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-----EEEEEEchHh---------------------hHHHHHHcCCC
Confidence 688999999999999999999999999999865 7777777765 56789999999
Q ss_pred --CCceEEEECC
Q 008336 277 --TLPTLVIIGP 286 (569)
Q Consensus 277 --~~Ptlvi~~~ 286 (569)
++|++++++.
T Consensus 66 ~~~~P~~~~~~~ 77 (103)
T cd02982 66 EEDLPVIAIINL 77 (103)
T ss_pred hhhCCEEEEEec
Confidence 8999999987
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.51 E-value=4e-07 Score=73.07 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=58.2
Q ss_pred ccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 353 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 353 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
.++.+.+-+..|+++||++|+...+.++++.+.+. ++.+..++.+..+ ++++.
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~~~-----------------------e~a~~ 60 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGALFQ-----------------------DEVEE 60 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHhCH-----------------------HHHHH
Confidence 35667888999999999999999999988887653 4788888877554 47899
Q ss_pred cCCCCccEEEEECCCCcEEEc
Q 008336 433 FKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~~ 453 (569)
|+|.++|++++ +|+++..
T Consensus 61 ~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 61 RGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred cCCccCCEEEE---CCEEEEe
Confidence 99999999975 6888776
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.45 E-value=7e-07 Score=71.66 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=57.7
Q ss_pred cCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHH
Q 008336 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (569)
+.++.+. .+..|+++||++|+...+.+.++.+.+. ++.+..++.+... +++.
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~------------------------e~a~ 59 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQ------------------------DEVE 59 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCH------------------------HHHH
Confidence 3467788 8888999999999999999999987753 4788888877653 4888
Q ss_pred hcCCCCccEEEEECCCCcEEEc
Q 008336 112 LFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 112 ~~~v~~~P~~~lid~~G~i~~~ 133 (569)
.|+|.++|++++ +|+++..
T Consensus 60 ~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 60 ERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred HcCCccCCEEEE---CCEEEEe
Confidence 999999999974 6877663
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.6e-07 Score=76.58 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=84.4
Q ss_pred cccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHHHHH
Q 008336 339 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDEF 410 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~~~~ 410 (569)
-+|.+ +.+|+.++|+.++||++||.--|+.|+.-...-..|++|+++|+++ +++|++..++. ..+++..+
T Consensus 15 ydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~--Gl~ILaFPCNQFg~QEp~~n~Ei~~f 92 (171)
T KOG1651|consen 15 YDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ--GLEILAFPCNQFGNQEPGSNEEILNF 92 (171)
T ss_pred eeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC--CeEEEEeccccccCcCCCCcHHHHHH
Confidence 36776 9999999999999999999999999999988888999999999987 79999999863 33566677
Q ss_pred HhcCCCcccccCc------hhhHHHHHhc----------CCCCccEEEEECCCCcEEEcc
Q 008336 411 FKGMPWLALPFGD------ARKASLSRKF----------KVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 411 ~~~~~~~~~~~~~------d~~~~l~~~~----------~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+.......+|+.. +....+.+.+ .|..-=+-||+|++|+++.|.
T Consensus 93 ~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry 152 (171)
T KOG1651|consen 93 VKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRF 152 (171)
T ss_pred HHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEee
Confidence 7644334445432 1112222222 122223678999999999984
|
|
| >PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.8e-08 Score=60.73 Aligned_cols=29 Identities=45% Similarity=1.177 Sum_probs=14.3
Q ss_pred eeccCCCCCCCc-eeEEcCCCCCCcccccc
Q 008336 509 YSCDGCDEEGRV-WAFSCDECDFCLHPNCA 537 (569)
Q Consensus 509 ~~c~~C~~~g~~-~~~~~~~~~~~~~~~~~ 537 (569)
+.|+.|++.+.+ |.|+|.+|+|.||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 369999999999 99999999999999996
|
The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A. |
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=73.50 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=43.1
Q ss_pred CCEEEEEEec--CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 357 GKTILLYFSA--HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 357 gk~vll~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
.+.+||.|+| |||+ + +|.+.+|+.++....+.+.|.-|+++.-.+ ..+.+|+.+|+
T Consensus 18 ~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~------------------~~~~~L~~~y~ 75 (116)
T cd03007 18 FKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDYGE------------------KLNMELGERYK 75 (116)
T ss_pred CCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecccccc------------------hhhHHHHHHhC
Confidence 5789999999 7777 2 244444444443221124555555542100 01357999999
Q ss_pred CC--CccEEEEECCCCc
Q 008336 435 VS--GIPMLVAIGPSGR 449 (569)
Q Consensus 435 v~--~~Pt~~lid~~G~ 449 (569)
|+ ++||+.++ ++|.
T Consensus 76 I~~~gyPTl~lF-~~g~ 91 (116)
T cd03007 76 LDKESYPVIYLF-HGGD 91 (116)
T ss_pred CCcCCCCEEEEE-eCCC
Confidence 99 99999999 4553
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=69.73 Aligned_cols=63 Identities=25% Similarity=0.685 Sum_probs=44.5
Q ss_pred CCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
||+++|+|++.||++|+.+...+ .++.+.+..+ +..+.|..+.... .. .+
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~~~~~----------------------~~--~~ 69 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVDDEDP----------------------NA--QF 69 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETTTHHH----------------------HH--HH
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcCCCCh----------------------hH--Hh
Confidence 89999999999999999998876 3344445543 7777777654321 11 11
Q ss_pred CCCCccEEEEECC
Q 008336 434 KVSGIPMLVAIGP 446 (569)
Q Consensus 434 ~v~~~Pt~~lid~ 446 (569)
...++|+++|+||
T Consensus 70 ~~~~~P~~~~ldp 82 (82)
T PF13899_consen 70 DRQGYPTFFFLDP 82 (82)
T ss_dssp HHCSSSEEEEEET
T ss_pred CCccCCEEEEeCC
Confidence 1166999999986
|
... |
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.6e-06 Score=81.74 Aligned_cols=84 Identities=23% Similarity=0.343 Sum_probs=66.5
Q ss_pred ccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 353 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 353 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
..+.++.-|++||.+.|+.|..+.|.|..+.+++ ++.|+.||+|.... ..||.... +..+++.
T Consensus 116 ~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-----g~~v~~vs~DG~~~-----------~~fp~~~~-~~g~~~~ 178 (215)
T PF13728_consen 116 KQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-----GFSVIPVSLDGRPI-----------PSFPNPRP-DPGQAKR 178 (215)
T ss_pred HHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-----CCEEEEEecCCCCC-----------cCCCCCCC-CHHHHHH
Confidence 3445788999999999999999999999999998 49999999996542 23333322 4457889
Q ss_pred cCCCCccEEEEECCCCcEEEc
Q 008336 433 FKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~~ 453 (569)
++|..+|+++|+++++.....
T Consensus 179 l~v~~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 179 LGVKVTPALFLVNPNTKKWYP 199 (215)
T ss_pred cCCCcCCEEEEEECCCCeEEE
Confidence 999999999999998844443
|
|
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.4e-07 Score=93.36 Aligned_cols=69 Identities=30% Similarity=0.586 Sum_probs=57.0
Q ss_pred CEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCC
Q 008336 358 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 437 (569)
Q Consensus 358 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~ 437 (569)
+.-+|.||++|||+|++++|.++++++.+..-..-+.|.+|++-+.. +..+||.|+|++
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~---------------------N~~lCRef~V~~ 116 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE---------------------NVKLCREFSVSG 116 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh---------------------hhhhHhhcCCCC
Confidence 57899999999999999999999999998765334566666654332 357999999999
Q ss_pred ccEEEEECCC
Q 008336 438 IPMLVAIGPS 447 (569)
Q Consensus 438 ~Pt~~lid~~ 447 (569)
+|++..+.++
T Consensus 117 ~Ptlryf~~~ 126 (606)
T KOG1731|consen 117 YPTLRYFPPD 126 (606)
T ss_pred CceeeecCCc
Confidence 9999999776
|
|
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.4e-06 Score=69.78 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=55.3
Q ss_pred cCCCCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHH
Q 008336 33 LDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (569)
.+.-++| ++|+|+++||++|+.+.... .++.+.+.+ ++.++.++++.... ..
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~----------------------~~ 67 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEG----------------------QR 67 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccH----------------------HH
Confidence 3445688 99999999999999986532 234444433 36666665553211 36
Q ss_pred HHHhcCCCCccEEEEECC-CCcEEEc
Q 008336 109 LDELFKVMGIPHLVILDE-NGKVLSD 133 (569)
Q Consensus 109 l~~~~~v~~~P~~~lid~-~G~i~~~ 133 (569)
++..|++.++|+++++|+ +|+++..
T Consensus 68 ~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 68 FLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HHHHhCccCCCeEEEEeCccCcEeEE
Confidence 888999999999999999 8988764
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-06 Score=90.61 Aligned_cols=66 Identities=27% Similarity=0.501 Sum_probs=55.3
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (569)
.+|.||++|||||+++.|.+.++++.+..-. -+.|.+|+|-+... ..+|+.|+|+++
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N----------------------~~lCRef~V~~~ 117 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN----------------------VKLCREFSVSGY 117 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh----------------------hhhHhhcCCCCC
Confidence 8999999999999999999999999987654 35666666654432 479999999999
Q ss_pred cEEEEECCC
Q 008336 119 PHLVILDEN 127 (569)
Q Consensus 119 P~~~lid~~ 127 (569)
|++..+-++
T Consensus 118 Ptlryf~~~ 126 (606)
T KOG1731|consen 118 PTLRYFPPD 126 (606)
T ss_pred ceeeecCCc
Confidence 999999665
|
|
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.2e-06 Score=79.58 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=66.1
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
.+.++.-|++||.+.|+.|.++.|.|+.+.+++ ++.|+.||+|.... ..||.... +...++.+
T Consensus 147 ~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y-----gi~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~~l 209 (256)
T TIGR02739 147 QLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-----GISVIPISVDGTLI-----------PGLPNSRS-DSGQAQHL 209 (256)
T ss_pred HHHhceeEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCC-----------CCCCCccC-ChHHHHhc
Confidence 344678999999999999999999999999998 49999999997642 23444322 34568889
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 434 KVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~ 453 (569)
+|..+|+++|++++.+....
T Consensus 210 ~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 210 GVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred CCccCceEEEEECCCCcEEE
Confidence 99999999999999654443
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.3e-06 Score=71.14 Aligned_cols=117 Identities=21% Similarity=0.302 Sum_probs=85.6
Q ss_pred cccCccCCcee--cCCC--ceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 14 LLSSSARDFLI--RSNG--DQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 14 ~~g~~~pdf~~--~~~g--~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
.+..++|+|.. -.+| +.++|++++|| |++.|| ..+--.|..+.-.+...+.+|++.+ -+|+++|+|. .....
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n-~eVig~S~DS-~fshl 82 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN-TEVLGISTDS-VFSHL 82 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC-CeEEEEeccc-hhhhh
Confidence 45678899932 2344 68999999999 989888 5666689999999999999999874 8999999994 34444
Q ss_pred HHH---HhCC-Cc--ccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 88 GYF---SKMP-WL--AVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~---~~~~-~~--~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
+|+ ++.+ .. .+|+..+ .+.++++.||+. .+-.++|||++|.+++.
T Consensus 83 AW~ntprk~gGlg~~~iPllsD-~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~i 139 (196)
T KOG0852|consen 83 AWINTPRKQGGLGPLNIPLLSD-LNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQI 139 (196)
T ss_pred hHhcCchhhCCcCccccceeec-cchhhHHhcCceecCCCcceeeeEEEccccceEEe
Confidence 443 3433 22 2444322 235899999983 45678999999988774
|
|
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-05 Score=68.92 Aligned_cols=69 Identities=16% Similarity=0.318 Sum_probs=50.6
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
.+|.++|+|+++||++|..+...+ .++.+.+.. ++.++.++++... ...++..
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~e---------------------g~~l~~~ 81 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSE---------------------GQRVSQF 81 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChh---------------------HHHHHHh
Confidence 389999999999999999987753 223344432 3555555544332 2468999
Q ss_pred cCCCCccEEEEECCCC
Q 008336 433 FKVSGIPMLVAIGPSG 448 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G 448 (569)
|+++++|++++++++|
T Consensus 82 ~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 82 YKLDSFPYVAIVDPRT 97 (122)
T ss_pred cCcCCCCEEEEEecCC
Confidence 9999999999999998
|
|
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.7e-06 Score=65.97 Aligned_cols=45 Identities=31% Similarity=0.727 Sum_probs=33.2
Q ss_pred CCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCC
Q 008336 36 LKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDED 82 (569)
Q Consensus 36 ~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~ 82 (569)
-+|| ++|+|+|+||++|+.+...+ .++.+.+.+ ++..+.|+.+..
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~ 63 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDE 63 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTH
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCC
Confidence 3588 99999999999999997766 334343442 478888887644
|
... |
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-05 Score=66.04 Aligned_cols=60 Identities=27% Similarity=0.460 Sum_probs=54.8
Q ss_pred ccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC
Q 008336 340 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR 402 (569)
Q Consensus 340 ~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~ 402 (569)
+|.+ +.+|+.++++.++||++||.-.|+-|+.-. ....|++++++|+++ +++|+++.++.
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~--gl~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK--GLEILAFPCNQ 63 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG--TEEEEEEEBST
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC--CeEEEeeehHH
Confidence 4666 899999999999999999999999999988 888999999999977 79999999864
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.1e-06 Score=78.18 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=64.1
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
++.++.-|++||.+.|+.|.++.|.|+.+.+++ ++.|+.||+|.... ..||.... +...+..+
T Consensus 140 ~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-----g~~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~~l 202 (248)
T PRK13703 140 KLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-----GLSVIPVSVDGVIN-----------PLLPDSRT-DQGQAQRL 202 (248)
T ss_pred HHHhcceEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCC-----------CCCCCCcc-ChhHHHhc
Confidence 344678899999999999999999999999998 48999999997532 23444322 23355789
Q ss_pred CCCCccEEEEECCCCcEEE
Q 008336 434 KVSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~ 452 (569)
+|..+|+++|++++.+-..
T Consensus 203 ~v~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 203 GVKYFPALMLVDPKSGSVR 221 (248)
T ss_pred CCcccceEEEEECCCCcEE
Confidence 9999999999999864433
|
|
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.4e-05 Score=66.85 Aligned_cols=117 Identities=19% Similarity=0.209 Sum_probs=94.3
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+|++ +.+.+.+++.++.||..+|..+ +-.-|.|..+...+++.+.++. +..|+.||+| .+-+.++|...
T Consensus 22 d~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~----~~~Vl~IS~D-LPFAq~RfC~a 96 (158)
T COG2077 22 DKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG----NTVVLCISMD-LPFAQKRFCGA 96 (158)
T ss_pred CcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC----CcEEEEEeCC-ChhHHhhhhhh
Confidence 34689988 9999999999999986666555 6677889999999998888775 4789999999 56788899998
Q ss_pred CCCcccccCch-hhHHHHHhcCCC--Cc-------cEEEEECCCCcEEEccchh
Q 008336 414 MPWLALPFGDA-RKASLSRKFKVS--GI-------PMLVAIGPSGRTITKEARD 457 (569)
Q Consensus 414 ~~~~~~~~~~d-~~~~l~~~~~v~--~~-------Pt~~lid~~G~i~~~~~~~ 457 (569)
.+.-+...++| ++..+.+.|||. .- .+.+++|.+|+|++...-.
T Consensus 97 eGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~ 150 (158)
T COG2077 97 EGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVP 150 (158)
T ss_pred cCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccc
Confidence 88776766666 456788999863 33 4789999999999986543
|
|
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=68.47 Aligned_cols=114 Identities=24% Similarity=0.308 Sum_probs=81.0
Q ss_pred cCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHHHH
Q 008336 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGY 89 (569)
Q Consensus 19 ~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~~~~~~ 89 (569)
.-|| ..+.+|++++|++++|| +||.-.||-|+.-. +-..|+.++++|+++| +.|+++.++ .+.+.+.+|
T Consensus 5 ~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G-f~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 5 IYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG-FEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred cccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC-cEEEeccccccccCCCCCHHHHHHH
Confidence 3466 45689999999999999 88889999999877 5678999999999998 999999886 356788888
Q ss_pred HHh-CCCcccccC----CchhHHHHHHhcC-----------CCCccEEEEECCCCcEEEcC
Q 008336 90 FSK-MPWLAVPFS----DSETRDKLDELFK-----------VMGIPHLVILDENGKVLSDG 134 (569)
Q Consensus 90 ~~~-~~~~~~~~~----~~~~~~~l~~~~~-----------v~~~P~~~lid~~G~i~~~~ 134 (569)
... ++..++.+. .......+.+.+. |..-=+-||||++|+|+.+-
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf 143 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRF 143 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEee
Confidence 774 444433321 1111122322221 22223569999999998753
|
|
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.8e-06 Score=77.12 Aligned_cols=83 Identities=28% Similarity=0.336 Sum_probs=64.5
Q ss_pred eecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHH
Q 008336 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 109 (569)
Q Consensus 31 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (569)
-.+..+.++ -|++||.+.|++|+.+.|.|..+++++ .+.|+.||+|...- . .+.+......+
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y----g~~v~~vs~DG~~~-----------~--~fp~~~~~~g~ 175 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY----GFSVIPVSLDGRPI-----------P--SFPNPRPDPGQ 175 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh----CCEEEEEecCCCCC-----------c--CCCCCCCCHHH
Confidence 344566777 899999999999999999999999998 39999999996421 1 12222123468
Q ss_pred HHhcCCCCccEEEEECCCCcE
Q 008336 110 DELFKVMGIPHLVILDENGKV 130 (569)
Q Consensus 110 ~~~~~v~~~P~~~lid~~G~i 130 (569)
.+.++|..+|+++|+++++..
T Consensus 176 ~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 176 AKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred HHHcCCCcCCEEEEEECCCCe
Confidence 889999999999999988733
|
|
| >KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.8e-05 Score=67.74 Aligned_cols=137 Identities=18% Similarity=0.292 Sum_probs=105.9
Q ss_pred cCCccceecCCCCceecccCCCCEEEEEEe--cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--hhHH----
Q 008336 336 SGDLDFVVGKNGGKVPVSDLAGKTILLYFS--AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QTSF---- 407 (569)
Q Consensus 336 ~~~~~f~~~~~g~~v~l~~~~gk~vll~F~--a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~--~~~~---- 407 (569)
...|+|..+..-.++.+.++.|..+.|.|. +...|.|..++..+.+++.+|..+ ++..++.|+|.- ...|
T Consensus 10 d~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR--nvKlialS~d~vesH~~Wi~DI 87 (224)
T KOG0854|consen 10 DTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR--NVKLIALSVDDVESHKDWIKDI 87 (224)
T ss_pred CcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc--CceEEEeehhhHHHHHHHHHHH
Confidence 445889887778889999999998888898 557889999999999999999877 799999999954 2233
Q ss_pred HHHHhcCC-CcccccCchhhHHHHHhcCCC--------C----ccEEEEECCCCcEEEccchhhHhhcCCCCCC-CCHHH
Q 008336 408 DEFFKGMP-WLALPFGDARKASLSRKFKVS--------G----IPMLVAIGPSGRTITKEARDMIAVHGAEAYP-FTEER 473 (569)
Q Consensus 408 ~~~~~~~~-~~~~~~~~d~~~~l~~~~~v~--------~----~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p-~~~~~ 473 (569)
+.|.+..+ -+.||+..|++.+++-.|+.- + ...+++||++.+|+-.-. || -++++
T Consensus 88 ks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~l-----------YP~ttGRN 156 (224)
T KOG0854|consen 88 KSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFL-----------YPSTTGRN 156 (224)
T ss_pred HHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEE-----------cccccCcC
Confidence 33333332 378899999999999888642 2 457899999999987621 23 35678
Q ss_pred HHHHHHHhhhhh
Q 008336 474 MKEIDGQYNEMA 485 (569)
Q Consensus 474 ~~~l~~~l~~l~ 485 (569)
.++++..|+.|.
T Consensus 157 ~dEiLRvidsLq 168 (224)
T KOG0854|consen 157 FDEILRVIDSLQ 168 (224)
T ss_pred HHHHHHHHHHHh
Confidence 889988888765
|
|
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.7e-06 Score=70.13 Aligned_cols=76 Identities=18% Similarity=0.369 Sum_probs=46.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
..+.-++.|..+|||.|+...|.|.++++..+ ++.+-.+..|.+.+ .++++ + ..|.
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~e----l~~~~--------------l--t~g~ 95 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKE----LMDQY--------------L--TNGG 95 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHH----HTTTT--------------T--T-SS
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChh----HHHHH--------------H--hCCC
Confidence 46788899999999999999999999988754 36776666665432 11111 1 1578
Q ss_pred CCccEEEEECCCCcEEEccc
Q 008336 436 SGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~~ 455 (569)
+.+|+++++|.+|+.+.+-+
T Consensus 96 ~~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 96 RSIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp --SSEEEEE-TT--EEEEEE
T ss_pred eecCEEEEEcCCCCEeEEEc
Confidence 89999999999999988743
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00018 Score=78.49 Aligned_cols=178 Identities=17% Similarity=0.203 Sum_probs=103.4
Q ss_pred ccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcc
Q 008336 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (569)
Q Consensus 195 ~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~ 274 (569)
++.+..+.+|..+.|+.|.++...+.+++ ++. +.+.+.+..... .+.+++.|+
T Consensus 364 l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s---~~i~~~~~~~~~-----------------------~~~~~~~~~ 416 (555)
T TIGR03143 364 LENPVTLLLFLDGSNEKSAELQSFLGEFA-SLS---EKLNSEAVNRGE-----------------------EPESETLPK 416 (555)
T ss_pred cCCCEEEEEEECCCchhhHHHHHHHHHHH-hcC---CcEEEEEecccc-----------------------chhhHhhcC
Confidence 56666777788877778877766665554 232 334343333322 346778999
Q ss_pred cCCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHH-HHhhhhhhhhhccCCccceecCCCCceecc
Q 008336 275 LSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRA-KEESQTLESVLVSGDLDFVVGKNGGKVPVS 353 (569)
Q Consensus 275 v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~g~~v~l~ 353 (569)
++..|++++++.+|+.. .|.++|+.. .. .+..|+..-.. +...+.+.... .-.+.
T Consensus 417 v~~~P~~~i~~~~~~~~------~i~f~g~P~---G~-Ef~s~i~~i~~~~~~~~~l~~~~--------------~~~i~ 472 (555)
T TIGR03143 417 ITKLPTVALLDDDGNYT------GLKFHGVPS---GH-ELNSFILALYNAAGPGQPLGEEL--------------LEKIK 472 (555)
T ss_pred CCcCCEEEEEeCCCccc------ceEEEecCc---cH-hHHHHHHHHHHhcCCCCCCCHHH--------------HHHHH
Confidence 99999999997555421 133444332 11 12222221111 00001110000 00122
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
.+.++.-+-.|.+++|+.|......+++++.... ++..-.|.....+ +++..|
T Consensus 473 ~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~----~i~~~~i~~~~~~-----------------------~~~~~~ 525 (555)
T TIGR03143 473 KITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP----NVEAEMIDVSHFP-----------------------DLKDEY 525 (555)
T ss_pred hcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC----CceEEEEECcccH-----------------------HHHHhC
Confidence 3335555667789999999988887777666643 4666666665544 588899
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 434 KVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~ 453 (569)
+|.++|++++ ||+++..
T Consensus 526 ~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 526 GIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred CceecCEEEE---CCEEEEe
Confidence 9999999987 4666655
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.3e-05 Score=67.22 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=53.6
Q ss_pred eecCCCCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhH
Q 008336 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETR 106 (569)
Q Consensus 31 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (569)
+..+.-.+| ++|+|+++||+.|..+.... .++.+.+.. ++.++.++++....
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg---------------------- 75 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEG---------------------- 75 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhH----------------------
Confidence 344555789 99999999999999986553 233334432 36666666654322
Q ss_pred HHHHHhcCCCCccEEEEECCCC
Q 008336 107 DKLDELFKVMGIPHLVILDENG 128 (569)
Q Consensus 107 ~~l~~~~~v~~~P~~~lid~~G 128 (569)
..++..|++.++|++.+++++|
T Consensus 76 ~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 76 QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred HHHHHhcCcCCCCEEEEEecCC
Confidence 3688999999999999999887
|
|
| >PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.1e-06 Score=52.44 Aligned_cols=29 Identities=38% Similarity=0.900 Sum_probs=27.0
Q ss_pred eeccCCCCCCCce-eEEcCCCCCCcccccc
Q 008336 509 YSCDGCDEEGRVW-AFSCDECDFCLHPNCA 537 (569)
Q Consensus 509 ~~c~~C~~~g~~~-~~~~~~~~~~~~~~~~ 537 (569)
+.|+.|.+...+. .|+|++|+|.||++||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 4799999999888 9999999999999997
|
The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins. |
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.1e-05 Score=66.24 Aligned_cols=68 Identities=38% Similarity=0.710 Sum_probs=53.2
Q ss_pred ecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-CChhHHHHHHhcCCCcccccCchhhHHH
Q 008336 351 PVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-RDQTSFDEFFKGMPWLALPFGDARKASL 429 (569)
Q Consensus 351 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-~~~~~~~~~~~~~~~~~~~~~~d~~~~l 429 (569)
....+.++++++.||++||++|+.++|.+.++++++.. .+.++.++.. ..+ .+
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~~~-----------------------~~ 79 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDENP-----------------------DL 79 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCCCh-----------------------HH
Confidence 33334488999999999999999999999999999865 3778888875 232 35
Q ss_pred HHhcC--CCCccEEEEE
Q 008336 430 SRKFK--VSGIPMLVAI 444 (569)
Q Consensus 430 ~~~~~--v~~~Pt~~li 444 (569)
...|+ +..+|+++++
T Consensus 80 ~~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 80 AAEFGVAVRSIPTLLLF 96 (127)
T ss_pred HHHHhhhhccCCeEEEE
Confidence 66677 8888998865
|
|
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.6e-05 Score=56.85 Aligned_cols=63 Identities=33% Similarity=0.531 Sum_probs=48.6
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.||++||++|.+..+.+.++ ..... ++.++.++++....... ....+++..+|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNK-GVKFEAVDVDEDPALEK---------------------ELKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCC-CcEEEEEEcCCChHHhh---------------------HHHhCCCccccE
Confidence 5789999999999999999998 33333 58999999987654211 135688999999
Q ss_pred EEEECCC
Q 008336 121 LVILDEN 127 (569)
Q Consensus 121 ~~lid~~ 127 (569)
+++++.+
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999765
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.5e-05 Score=56.86 Aligned_cols=63 Identities=30% Similarity=0.657 Sum_probs=48.4
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.||+.||++|++..+.+.++ .... .++.++.++++...... .....+++..+|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLN--KGVKFEAVDVDEDPALE--------------------KELKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhC--CCcEEEEEEcCCChHHh--------------------hHHHhCCCccccE
Confidence 5789999999999999999988 2222 36899999988764311 1135789999999
Q ss_pred EEEECCC
Q 008336 441 LVAIGPS 447 (569)
Q Consensus 441 ~~lid~~ 447 (569)
+++++++
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999766
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.8e-05 Score=65.44 Aligned_cols=69 Identities=39% Similarity=0.699 Sum_probs=53.4
Q ss_pred eeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-CCHHHHHHHHHhCCCcccccCCchhHH
Q 008336 30 QVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-EDDEAFKGYFSKMPWLAVPFSDSETRD 107 (569)
Q Consensus 30 ~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (569)
.......+++ +++.||++||++|+.++|.+.++.+++.. .+.++.++.. ...
T Consensus 24 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~------------------------ 77 (127)
T COG0526 24 PLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENP------------------------ 77 (127)
T ss_pred ceehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCCh------------------------
Confidence 3444445588 99999999999999999999999999875 3778888886 232
Q ss_pred HHHHhcC--CCCccEEEEE
Q 008336 108 KLDELFK--VMGIPHLVIL 124 (569)
Q Consensus 108 ~l~~~~~--v~~~P~~~li 124 (569)
.+...|+ +..+|+++++
T Consensus 78 ~~~~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 78 DLAAEFGVAVRSIPTLLLF 96 (127)
T ss_pred HHHHHHhhhhccCCeEEEE
Confidence 3556666 7888988755
|
|
| >KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.4e-05 Score=67.16 Aligned_cols=118 Identities=22% Similarity=0.315 Sum_probs=82.5
Q ss_pred CccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHH
Q 008336 17 SSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFK 87 (569)
Q Consensus 17 ~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~~~~ 87 (569)
...-+| ..+.+|+.++|+.++|| +||.--||.|+.=...-.+|+.++++|++.| ++|++..|+ ...+++.
T Consensus 12 ~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G-l~ILaFPCNQFg~QEp~~n~Ei~ 90 (171)
T KOG1651|consen 12 GSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG-LEILAFPCNQFGNQEPGSNEEIL 90 (171)
T ss_pred cceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC-eEEEEeccccccCcCCCCcHHHH
Confidence 344567 45789999999999999 8888899999998877889999999999997 999999886 2445677
Q ss_pred HHHHh-CCCcccccC----CchhHHHHHHhcC----------CCCccEEEEECCCCcEEEcCC
Q 008336 88 GYFSK-MPWLAVPFS----DSETRDKLDELFK----------VMGIPHLVILDENGKVLSDGG 135 (569)
Q Consensus 88 ~~~~~-~~~~~~~~~----~~~~~~~l~~~~~----------v~~~P~~~lid~~G~i~~~~~ 135 (569)
.++.. .+..+..+. ..+....+.+.+. |..-=+-||+|++|+++.+-+
T Consensus 91 ~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 91 NFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 77753 333222221 1111223333222 222234599999999998644
|
|
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.3e-05 Score=75.25 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=64.0
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
.+..+.++ -|++||.+.|++|.++.|.+..++++++ +.|+.||+|.... ..++ +......++
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg----i~v~~VS~DG~~~-----------p~fp--~~~~d~gqa 206 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG----ISVIPISVDGTLI-----------PGLP--NSRSDSGQA 206 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCCCCC-----------CCCC--CccCChHHH
Confidence 44556677 8999999999999999999999999983 9999999996521 1122 111223578
Q ss_pred HhcCCCCccEEEEECCCCcEE
Q 008336 111 ELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 111 ~~~~v~~~P~~~lid~~G~i~ 131 (569)
+.+++..+|+++|++++.+..
T Consensus 207 ~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 207 QHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhcCCccCceEEEEECCCCcE
Confidence 899999999999999885433
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00027 Score=77.24 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=103.0
Q ss_pred CCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 34 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
..+++. .|+.|+.+.|..|..+...|.+++ .+.+ .+.+...+...+ ..+.+.
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~--~i~~~~~~~~~~------------------------~~~~~~ 414 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSE--KLNSEAVNRGEE------------------------PESETL 414 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCC--cEEEEEeccccc------------------------hhhHhh
Confidence 456778 788899988999988877777776 4444 366665555433 247789
Q ss_pred cCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCceee-
Q 008336 113 FKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKIS- 191 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~- 191 (569)
|++...|++.+++.+|+- .+ ++-+|... -.++..|+..- +....... ..+.+...
T Consensus 415 ~~v~~~P~~~i~~~~~~~---~~---i~f~g~P~----G~Ef~s~i~~i------------~~~~~~~~--~l~~~~~~~ 470 (555)
T TIGR03143 415 PKITKLPTVALLDDDGNY---TG---LKFHGVPS----GHELNSFILAL------------YNAAGPGQ--PLGEELLEK 470 (555)
T ss_pred cCCCcCCEEEEEeCCCcc---cc---eEEEecCc----cHhHHHHHHHH------------HHhcCCCC--CCCHHHHHH
Confidence 999999999999766631 01 12223221 12222333211 00000000 00111110
Q ss_pred eccccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHh
Q 008336 192 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (569)
Q Consensus 192 ~~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~ 271 (569)
+..++++..+..|..++||.|......+.+++.... +++.-++.... ++.+++
T Consensus 471 i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~----~i~~~~i~~~~-----------------------~~~~~~ 523 (555)
T TIGR03143 471 IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP----NVEAEMIDVSH-----------------------FPDLKD 523 (555)
T ss_pred HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC----CceEEEEECcc-----------------------cHHHHH
Confidence 112455666777899999999987777766665532 33344443322 568889
Q ss_pred hcccCCCceEEEE
Q 008336 272 YFELSTLPTLVII 284 (569)
Q Consensus 272 ~f~v~~~Ptlvi~ 284 (569)
.|+|.++|++++-
T Consensus 524 ~~~v~~vP~~~i~ 536 (555)
T TIGR03143 524 EYGIMSVPAIVVD 536 (555)
T ss_pred hCCceecCEEEEC
Confidence 9999999999874
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.6e-06 Score=69.86 Aligned_cols=77 Identities=32% Similarity=0.595 Sum_probs=46.0
Q ss_pred cCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHH
Q 008336 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (569)
++.+.++ .++.|..+|||.|++..|.|.++++..+ ++.+-.+..|++.+...+| +
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~-------------------l-- 91 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQY-------------------L-- 91 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTT-------------------T--
T ss_pred HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHH-------------------H--
Confidence 4455666 8888999999999999999999998743 4667666666554421111 1
Q ss_pred hcCCCCccEEEEECCCCcEEEc
Q 008336 112 LFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 112 ~~~v~~~P~~~lid~~G~i~~~ 133 (569)
..|...+|+++++|++|+.+..
T Consensus 92 t~g~~~IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 92 TNGGRSIPTFIFLDKDGKELGR 113 (129)
T ss_dssp T-SS--SSEEEEE-TT--EEEE
T ss_pred hCCCeecCEEEEEcCCCCEeEE
Confidence 1578899999999999988753
|
|
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00022 Score=61.26 Aligned_cols=84 Identities=25% Similarity=0.473 Sum_probs=61.7
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCc----hhhHH
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD----ARKAS 428 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~----d~~~~ 428 (569)
.+|+.++.|-.+.|+.|.++...+ .++.+-+++. +.++-+.+..... ..+-.+. -...+
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skp-----------v~f~~g~kee~~s~~E 106 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKP-----------VLFKVGDKEEKMSTEE 106 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcc-----------eEeecCceeeeecHHH
Confidence 489999999999999999987765 3455666654 7777776643321 1111111 12358
Q ss_pred HHHhcCCCCccEEEEECCCCcEEEc
Q 008336 429 LSRKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 429 l~~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
+++.|+|+++|+++++|++|+.+..
T Consensus 107 La~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 107 LAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred HHHHhccccCceEEEEcCCCCEEEe
Confidence 9999999999999999999998886
|
|
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.1e-05 Score=73.88 Aligned_cols=80 Identities=19% Similarity=0.208 Sum_probs=61.9
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
.+.++.++ -|++||.+.|++|.++.|.+..++++++ +.|+.||+|.... +.++ +........
T Consensus 137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg----~~v~~VS~DG~~~-----------p~fp--~~~~d~gqa 199 (248)
T PRK13703 137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG----LSVIPVSVDGVIN-----------PLLP--DSRTDQGQA 199 (248)
T ss_pred HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCCCCC-----------CCCC--CCccChhHH
Confidence 35566677 8999999999999999999999999983 8999999996421 1122 111222456
Q ss_pred HhcCCCCccEEEEECCCC
Q 008336 111 ELFKVMGIPHLVILDENG 128 (569)
Q Consensus 111 ~~~~v~~~P~~~lid~~G 128 (569)
+.++|..+|+++|++++.
T Consensus 200 ~~l~v~~~PAl~Lv~~~t 217 (248)
T PRK13703 200 QRLGVKYFPALMLVDPKS 217 (248)
T ss_pred HhcCCcccceEEEEECCC
Confidence 889999999999999875
|
|
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.8e-05 Score=62.67 Aligned_cols=78 Identities=27% Similarity=0.611 Sum_probs=49.8
Q ss_pred CCEEEEEEec-------CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHH
Q 008336 357 GKTILLYFSA-------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 429 (569)
Q Consensus 357 gk~vll~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l 429 (569)
+++++|+|++ +|||.|++..|.+++......+ +..+|.+.+... ..|+ +++..+
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r-~~Wk---------------dp~n~f 79 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDR-PEWK---------------DPNNPF 79 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---H-HHHC----------------TTSHH
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCH-HHhC---------------CCCCCc
Confidence 6788888884 4999999999999988777544 377787777532 3332 223345
Q ss_pred HH--hcCCCCccEEEEECCCCcEEEc
Q 008336 430 SR--KFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 430 ~~--~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
.. .++++++||++-++..++++..
T Consensus 80 R~~p~~~l~~IPTLi~~~~~~rL~e~ 105 (119)
T PF06110_consen 80 RTDPDLKLKGIPTLIRWETGERLVEE 105 (119)
T ss_dssp HH--CC---SSSEEEECTSS-EEEHH
T ss_pred eEcceeeeeecceEEEECCCCccchh
Confidence 44 6999999999999766565443
|
; PDB: 1V9W_A 1WOU_A. |
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00038 Score=64.27 Aligned_cols=171 Identities=21% Similarity=0.344 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECC-CCcEEEc
Q 008336 55 FTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDE-NGKVLSD 133 (569)
Q Consensus 55 ~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~-~G~i~~~ 133 (569)
+...+.++++.+... +.+..+. + ..+++.+++.. |+++++.+ +++....
T Consensus 8 ~~~~f~~~A~~~~~~--~~F~~~~---~------------------------~~~~~~~~~~~-p~i~~~k~~~~~~~~y 57 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGD--YQFGVTF---N------------------------EELAKKYGIKE-PTIVVYKKFDEKPVVY 57 (184)
T ss_dssp HHHHHHHHHHHHTTT--SEEEEEE----------------------------HHHHHHCTCSS-SEEEEEECTTTSEEEE
T ss_pred HHHHHHHHHHhCcCC--cEEEEEc---H------------------------HHHHHHhCCCC-CcEEEeccCCCCceec
Confidence 456777888888643 5555443 1 25788899998 99999965 2333332
Q ss_pred CCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCceeeeccccCcE-EEEEEecCCcccc
Q 008336 134 GGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT-IGLYFSMSSYKAS 212 (569)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~gk~-v~l~f~~~~~~~c 212 (569)
.+. .++.+.|..++ .....|.+...+.+++......++. ++++|........
T Consensus 58 ~~~-----------~~~~~~l~~fI----------------~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~ 110 (184)
T PF13848_consen 58 DGD-----------KFTPEELKKFI----------------KKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNEST 110 (184)
T ss_dssp SSS-----------TTSHHHHHHHH----------------HHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHH
T ss_pred ccc-----------cCCHHHHHHHH----------------HHhccccccccchhhHHHHhcCCCceEEEEEEcCCchhH
Confidence 221 24555555544 3345555655556555554445544 6677766555666
Q ss_pred hhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccC--CCceEEEECCCC-C
Q 008336 213 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS--TLPTLVIIGPDG-K 289 (569)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~--~~Ptlvi~~~~g-~ 289 (569)
..+...+.+++.+++++ +.|+.+|.+. ..++++.||++ .+|++++++... +
T Consensus 111 ~~~~~~l~~~a~~~~~~-----~~f~~~d~~~---------------------~~~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 111 EAFKKELQDIAKKFKGK-----INFVYVDADD---------------------FPRLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp HHHHHHHHHHHHCTTTT-----SEEEEEETTT---------------------THHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred HHHHHHHHHHHHhcCCe-----EEEEEeehHH---------------------hHHHHHHcCCCCccCCEEEEEECCCCc
Confidence 77777888888887655 5566666543 45678899998 799999998543 3
Q ss_pred chhhhhHHHHHhhCCCCCCCChHHHHHHHH
Q 008336 290 TLHSNVAEAIEEHGVGAFPFTPEKFAELAE 319 (569)
Q Consensus 290 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 319 (569)
+.+.. ..+++.+.+.+|.+
T Consensus 165 ~~~~~-----------~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 165 YYYLP-----------EGEITPESIEKFLN 183 (184)
T ss_dssp EEE-------------SSCGCHHHHHHHHH
T ss_pred EEcCC-----------CCCCCHHHHHHHhc
Confidence 22210 12678888888875
|
... |
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.5e-05 Score=65.82 Aligned_cols=79 Identities=16% Similarity=0.370 Sum_probs=40.7
Q ss_pred CCEEEEEEecCCChhHHhhhHH-H--HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 357 GKTILLYFSAHWCPPCRAFLPK-L--IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
+|+|+|.++++||.+|..|... + .++++.+... |.-|.|+.+..++ ++.....+ .....
T Consensus 37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDree~Pd-id~~y~~~--------------~~~~~ 98 (163)
T PF03190_consen 37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDREERPD-IDKIYMNA--------------VQAMS 98 (163)
T ss_dssp T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEETTT-HH-HHHHHHHH--------------HHHHH
T ss_pred CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEeccccCcc-HHHHHHHH--------------HHHhc
Confidence 8999999999999999998763 2 2234444332 4444444443332 21111110 11123
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 434 KVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~ 453 (569)
+..|+|++++++|+|+.++.
T Consensus 99 ~~gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 99 GSGGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp S---SSEEEEE-TTS-EEEE
T ss_pred CCCCCCceEEECCCCCeeee
Confidence 78899999999999999886
|
; PDB: 3IRA_A. |
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=68.32 Aligned_cols=135 Identities=19% Similarity=0.368 Sum_probs=90.2
Q ss_pred cccCccCCc-eecCCCce-eecCCC-C-Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEe----CC----
Q 008336 14 LLSSSARDF-LIRSNGDQ-VKLDSL-K-GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS----GD---- 80 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~-v~l~~~-~-gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~----~d---- 80 (569)
.+|.+|||. +++++|+. .++.++ + ++ ++|+|-+-.||+=+.-++.+++++++|.+.-++.+|.|. .|
T Consensus 74 ~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~ 153 (237)
T PF00837_consen 74 KLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAF 153 (237)
T ss_pred eCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccC
Confidence 579999999 78899988 999998 4 45 999999988999999999999999999875456666662 11
Q ss_pred ----------C---CH-HHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcCCcceeecccCCC
Q 008336 81 ----------E---DD-EAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEG 146 (569)
Q Consensus 81 ----------~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~ 146 (569)
. ++ ..++...++. .....+.|.- .....+.||..-- .++|| .+|+|++.+| ...
T Consensus 154 ~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~m-dN~~~~~YgA~Pe-RlyIi-~~gkv~Y~Gg--------~GP 221 (237)
T PF00837_consen 154 GNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTM-DNNFNKAYGALPE-RLYII-QDGKVVYKGG--------PGP 221 (237)
T ss_pred CCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEcc-CCHHHHHhCCCcc-eEEEE-ECCEEEEeCC--------CCC
Confidence 0 11 1233333333 2222233333 3456677876422 24555 6899998755 233
Q ss_pred CCccHHHHHHHHHH
Q 008336 147 YPFTVERIKEMKEQ 160 (569)
Q Consensus 147 ~~~~~~~i~~~~~~ 160 (569)
+-+..+++++.+++
T Consensus 222 ~~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 222 FGYSPEELREWLEK 235 (237)
T ss_pred CcCCHHHHHHHHHh
Confidence 44567777776654
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00017 Score=59.69 Aligned_cols=58 Identities=29% Similarity=0.457 Sum_probs=52.6
Q ss_pred Cc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 008336 21 DF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (569)
Q Consensus 21 df-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d 80 (569)
+| ..+++|+.++++.++|| +||.=-|+-|+.-. ....|++++++|+++| ++|+++.++
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g-l~ILaFPcn 62 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG-LEILAFPCN 62 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT-EEEEEEEBS
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC-eEEEeeehH
Confidence 46 45789999999999999 88888999999888 8889999999999887 999999886
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00026 Score=54.24 Aligned_cols=59 Identities=19% Similarity=0.539 Sum_probs=43.0
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
+..|+++||++|++..+.|.+ . ++.+..++++.++.. ..++.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~--~i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K--GIAFEEIDVEKDSAA-------------------REEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C--CCeEEEEeccCCHHH-------------------HHHHHHHhCCCcccE
Confidence 467999999999999887754 1 367777777765431 124667789999999
Q ss_pred EEEECCCCcE
Q 008336 441 LVAIGPSGRT 450 (569)
Q Consensus 441 ~~lid~~G~i 450 (569)
+++- |++
T Consensus 54 ~~~~---~~~ 60 (74)
T TIGR02196 54 IVIG---HKI 60 (74)
T ss_pred EEEC---CEE
Confidence 9873 555
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00024 Score=62.09 Aligned_cols=114 Identities=19% Similarity=0.326 Sum_probs=83.6
Q ss_pred ccCccCCceecCCCceeecCCCCCc-EEEEEe--cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHH
Q 008336 15 LSSSARDFLIRSNGDQVKLDSLKGK-IGLYFS--ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (569)
Q Consensus 15 ~g~~~pdf~~~~~g~~v~l~~~~gk-vlv~F~--a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~ 91 (569)
+|+.+|+|..+..-..+++.++.|. +.|.|. |...|.|..++..+++++-+|..++ +.++++|+|. .+....|++
T Consensus 8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn-vKlialS~d~-vesH~~Wi~ 85 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN-VKLIALSVDD-VESHKDWIK 85 (224)
T ss_pred ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC-ceEEEeehhh-HHHHHHHHH
Confidence 7999999988877677999999999 888886 6788999999999999999999885 9999999994 333333332
Q ss_pred -------hCC--CcccccCCchhHHHHHHhcCCC--------C----ccEEEEECCCCcEEE
Q 008336 92 -------KMP--WLAVPFSDSETRDKLDELFKVM--------G----IPHLVILDENGKVLS 132 (569)
Q Consensus 92 -------~~~--~~~~~~~~~~~~~~l~~~~~v~--------~----~P~~~lid~~G~i~~ 132 (569)
..+ ..++.+.|. ..+++-.|+.. + ...++++|++.+++-
T Consensus 86 DIks~~~~~~~~~~yPIIaD~--~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirL 145 (224)
T KOG0854|consen 86 DIKSYAKVKNHSVPYPIIADP--NRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRL 145 (224)
T ss_pred HHHHHHhccCCCCCCCeecCC--chhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEE
Confidence 222 222222332 34676666642 2 346799999988864
|
|
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00022 Score=54.69 Aligned_cols=55 Identities=22% Similarity=0.549 Sum_probs=41.3
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
+..|+++||++|++..+.|.+ . ++.+..++++.+.+. ...+.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~-~i~~~~vdi~~~~~~--------------------~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K-GIAFEEIDVEKDSAA--------------------REEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C-CCeEEEEeccCCHHH--------------------HHHHHHHhCCCcccE
Confidence 467999999999998877754 2 377888888766442 124667789999998
Q ss_pred EEE
Q 008336 121 LVI 123 (569)
Q Consensus 121 ~~l 123 (569)
+++
T Consensus 54 ~~~ 56 (74)
T TIGR02196 54 IVI 56 (74)
T ss_pred EEE
Confidence 876
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00019 Score=56.90 Aligned_cols=65 Identities=26% Similarity=0.498 Sum_probs=45.4
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|+++|||+|++..+.|.++. +. +.+.++-|+.+.+....++ .+.+.+++.++|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~--~~~~~~~v~~~~~~~~~~~-------------------~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK--PAYEVVELDQLSNGSEIQD-------------------YLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC--CCCEEEEeeCCCChHHHHH-------------------HHHHHhCCCCCCe
Confidence 46799999999999999998875 22 1367777777655443322 3566788999999
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
+++ +|+.+
T Consensus 58 v~i---~g~~i 65 (84)
T TIGR02180 58 IFI---NGKFI 65 (84)
T ss_pred EEE---CCEEE
Confidence 754 45443
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.2e-05 Score=78.43 Aligned_cols=77 Identities=19% Similarity=0.395 Sum_probs=54.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHH-HHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLI-DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~-~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
++|+|+|+|||.||-.|+.+.+..- +.....+-. ++..+-+++..+. ....++.++|+
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~--~~vlLqaDvT~~~-------------------p~~~~lLk~~~ 531 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ--DVVLLQADVTAND-------------------PAITALLKRLG 531 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC--CeEEEEeeecCCC-------------------HHHHHHHHHcC
Confidence 4569999999999999999988654 333333322 4555555544332 12456788999
Q ss_pred CCCccEEEEECCCCcEEEc
Q 008336 435 VSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~~ 453 (569)
+-+.|++++++++|+-...
T Consensus 532 ~~G~P~~~ff~~~g~e~~~ 550 (569)
T COG4232 532 VFGVPTYLFFGPQGSEPEI 550 (569)
T ss_pred CCCCCEEEEECCCCCcCcC
Confidence 9999999999999875443
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00064 Score=58.18 Aligned_cols=90 Identities=9% Similarity=0.112 Sum_probs=63.6
Q ss_pred EEEEEEec--CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 359 TILLYFSA--HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 359 ~vll~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
..+|.|-+ ..++-+....=.|.+++++|.+. ++.++.|++|.++ .++..|+|+
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~--~v~~akVDiD~~~-----------------------~LA~~fgV~ 90 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY--TWQVAIADLEQSE-----------------------AIGDRFGVF 90 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC--ceEEEEEECCCCH-----------------------HHHHHcCCc
Confidence 44444442 23555666777788888888632 3888888888776 599999999
Q ss_pred CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 008336 437 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW 488 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~ 488 (569)
++||++++ ++|+++.+..+- ...++|.+.|++++...
T Consensus 91 siPTLl~F-kdGk~v~~i~G~--------------~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 91 RFPATLVF-TGGNYRGVLNGI--------------HPWAELINLMRGLVEPQ 127 (132)
T ss_pred cCCEEEEE-ECCEEEEEEeCc--------------CCHHHHHHHHHHHhcCc
Confidence 99999999 899999884321 11255677777776543
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00019 Score=56.88 Aligned_cols=65 Identities=23% Similarity=0.402 Sum_probs=45.0
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|+++|||+|++..+.|.++. +.. .+.++-|+.+.+...+. ..+.+.+++..+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~------------------~~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQ------------------DYLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHH------------------HHHHHHhCCCCCCe
Confidence 46799999999999999998765 322 26777777664433221 23566788999999
Q ss_pred EEEECCCCcEE
Q 008336 441 LVAIGPSGRTI 451 (569)
Q Consensus 441 ~~lid~~G~i~ 451 (569)
++ + +|+.+
T Consensus 58 v~-i--~g~~i 65 (84)
T TIGR02180 58 IF-I--NGKFI 65 (84)
T ss_pred EE-E--CCEEE
Confidence 85 4 45544
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00035 Score=54.23 Aligned_cols=62 Identities=24% Similarity=0.525 Sum_probs=40.5
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh-cCCCCcc
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL-FKVMGIP 119 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~v~~~P 119 (569)
++.||++||++|++..+.|.++ + +.+-.++++.+.... ..+... +++.++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~-~~~~~idi~~~~~~~--------------------~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------G-AAYEWVDIEEDEGAA--------------------DRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C-CceEEEeCcCCHhHH--------------------HHHHHHhCCCceeC
Confidence 5679999999999998887654 2 445566777554311 112222 5889999
Q ss_pred EEEEECCCCcEEE
Q 008336 120 HLVILDENGKVLS 132 (569)
Q Consensus 120 ~~~lid~~G~i~~ 132 (569)
++ ++ .+|+++.
T Consensus 54 ~i-~~-~~g~~l~ 64 (77)
T TIGR02200 54 TV-KF-ADGSFLT 64 (77)
T ss_pred EE-EE-CCCeEec
Confidence 86 45 4676654
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00051 Score=53.27 Aligned_cols=63 Identities=13% Similarity=0.336 Sum_probs=40.6
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH-hcCCCCcc
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR-KFKVSGIP 439 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~-~~~v~~~P 439 (569)
+..||++||++|++..+.|.++. +.+-.++++.+... ...+.+ .+++.++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~---------~~~~~idi~~~~~~-------------------~~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG---------AAYEWVDIEEDEGA-------------------ADRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC---------CceEEEeCcCCHhH-------------------HHHHHHHhCCCceeC
Confidence 56799999999999999875431 33345666655321 011222 25889999
Q ss_pred EEEEECCCCcEEEc
Q 008336 440 MLVAIGPSGRTITK 453 (569)
Q Consensus 440 t~~lid~~G~i~~~ 453 (569)
++ ++ .+|+++..
T Consensus 54 ~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 54 TV-KF-ADGSFLTN 65 (77)
T ss_pred EE-EE-CCCeEecC
Confidence 97 45 46777665
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00083 Score=57.76 Aligned_cols=87 Identities=25% Similarity=0.439 Sum_probs=60.3
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHHH---HHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccC-----C
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILA---EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS-----D 102 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~---~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~-----~ 102 (569)
.+....+| .++.|-++.|++|.++...+. ++.+.+.. .+.++.++...... +.+. .
T Consensus 36 ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skp-------------v~f~~g~kee 100 (182)
T COG2143 36 KSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKP-------------VLFKVGDKEE 100 (182)
T ss_pred HhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcc-------------eEeecCceee
Confidence 44556789 999999999999998866553 34444443 37777776653321 1111 1
Q ss_pred chhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 103 SETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
....+++++.|+++++|+++++|.+|+.+..
T Consensus 101 ~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 101 KMSTEELAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred eecHHHHHHHhccccCceEEEEcCCCCEEEe
Confidence 1123589999999999999999999987653
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0002 Score=75.12 Aligned_cols=75 Identities=21% Similarity=0.354 Sum_probs=54.8
Q ss_pred CCCCc-EEEEEecCCCHhhHhhHHHHH-HHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 35 SLKGK-IGLYFSASWCGPCQRFTPILA-EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 35 ~~~gk-vlv~F~a~wC~~C~~~~p~l~-~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
+-++| |+|+|||.||-.|+.+.+..- +.....+-. ++..+-+++..+.. ...++.++
T Consensus 471 ~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p--------------------~~~~lLk~ 529 (569)
T COG4232 471 EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDP--------------------AITALLKR 529 (569)
T ss_pred hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCH--------------------HHHHHHHH
Confidence 34678 999999999999998877654 333333333 57777777765432 12467789
Q ss_pred cCCCCccEEEEECCCCcE
Q 008336 113 FKVMGIPHLVILDENGKV 130 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i 130 (569)
|++-+.|++++++++|+-
T Consensus 530 ~~~~G~P~~~ff~~~g~e 547 (569)
T COG4232 530 LGVFGVPTYLFFGPQGSE 547 (569)
T ss_pred cCCCCCCEEEEECCCCCc
Confidence 999999999999988854
|
|
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00033 Score=63.56 Aligned_cols=90 Identities=26% Similarity=0.519 Sum_probs=67.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC-
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV- 435 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v- 435 (569)
.+.++|.|++.|.+.|+...|.+.++..+|... .+.+-.|++.+-++ .+.+|+|
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~--~lkFGkvDiGrfpd-----------------------~a~kfris 198 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN--LLKFGKVDIGRFPD-----------------------VAAKFRIS 198 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCCC--CCcccceeeccCcC-----------------------hHHheeec
Confidence 469999999999999999999999999999754 46666666665442 4566665
Q ss_pred -----CCccEEEEECCCCcEEEccchhhHhhcC-CCCCCCCHHHH
Q 008336 436 -----SGIPMLVAIGPSGRTITKEARDMIAVHG-AEAYPFTEERM 474 (569)
Q Consensus 436 -----~~~Pt~~lid~~G~i~~~~~~~~~~~~g-~~~~p~~~~~~ 474 (569)
+..||++++ ++|+-+.+ +..+..-| +..+||+++.+
T Consensus 199 ~s~~srQLPT~ilF-q~gkE~~R--rP~vd~~gra~s~~fSeenv 240 (265)
T KOG0914|consen 199 LSPGSRQLPTYILF-QKGKEVSR--RPDVDVKGRAVSFPFSEENV 240 (265)
T ss_pred cCcccccCCeEEEE-ccchhhhc--CccccccCCcccccccHHHH
Confidence 468999999 78888776 33344443 45578888765
|
|
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0013 Score=58.41 Aligned_cols=87 Identities=25% Similarity=0.359 Sum_probs=47.5
Q ss_pred ceeecCCCCCc-EEEEEecCCCHhhHhhHHH-H--HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCch
Q 008336 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPI-L--AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSE 104 (569)
Q Consensus 29 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~-l--~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 104 (569)
+.+..+.-.+| ++|.++++||+.|+.+..+ | .++++.+.+ ++.-|.|+.++.++.-..|..
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~------------- 92 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMN------------- 92 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHH-------------
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHH-------------
Confidence 34455555789 9999999999999988542 2 123333332 366666666655543222221
Q ss_pred hHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 105 TRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 105 ~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
......|..|.|++++++++|+.+..
T Consensus 93 ---~~~~~~~~gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 93 ---AVQAMSGSGGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp ---HHHHHHS---SSEEEEE-TTS-EEEE
T ss_pred ---HHHHhcCCCCCCceEEECCCCCeeee
Confidence 11122378899999999999999874
|
; PDB: 3IRA_A. |
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00029 Score=64.71 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=55.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
+++.+++.||++||.+|..+...+..+.+.++ ++.++.+..+..+ +++..+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a~~~~-----------------------eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEAEEFP-----------------------EISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehhhhhh-----------------------HHHHHHHH
Confidence 57899999999999999999999999888873 2555555555443 58888999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 436 SGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~ 453 (569)
.+.|.+.++ ..|..+.+
T Consensus 69 ~~vp~~~~~-~~~~~v~~ 85 (227)
T KOG0911|consen 69 EAVPYFVFF-FLGEKVDR 85 (227)
T ss_pred hcCceeeee-ecchhhhh
Confidence 999999888 56666555
|
|
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0012 Score=54.18 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=51.6
Q ss_pred CCEEEEEEec--------CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHH
Q 008336 357 GKTILLYFSA--------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 428 (569)
Q Consensus 357 gk~vll~F~a--------~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 428 (569)
|+.++++|++ +|||.|.+..|.+.+..+....+ +.+|-+.+.+-+ . -.+++..
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~---~~~v~v~VG~rp-~---------------Wk~p~n~ 85 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPED---VHFVHVYVGNRP-Y---------------WKDPANP 85 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCc---eEEEEEEecCCC-c---------------ccCCCCc
Confidence 6667788874 59999999999998888866553 788887776432 1 2234445
Q ss_pred HHHhcCC-CCccEEEEECC
Q 008336 429 LSRKFKV-SGIPMLVAIGP 446 (569)
Q Consensus 429 l~~~~~v-~~~Pt~~lid~ 446 (569)
+....++ .++||++=.+.
T Consensus 86 FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred cccCCCceeecceeeEEcC
Confidence 6666666 99999999864
|
|
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0027 Score=53.66 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=50.5
Q ss_pred CCCEEEEEEecC----CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 356 AGKTILLYFSAH----WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 356 ~gk~vll~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
.+|.++|+++++ ||.+|+..+.. .++.+-+.. ++-+++.+++... ..+++.
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~---~fv~w~~dv~~~e---------------------g~~la~ 70 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT---RMLFWACSVAKPE---------------------GYRVSQ 70 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc---CEEEEEEecCChH---------------------HHHHHH
Confidence 389999999999 89999875432 122333332 3666666655432 257899
Q ss_pred hcCCCCccEEEEE---CCCCcEEEc
Q 008336 432 KFKVSGIPMLVAI---GPSGRTITK 453 (569)
Q Consensus 432 ~~~v~~~Pt~~li---d~~G~i~~~ 453 (569)
.++++++|++.++ +.+..++.+
T Consensus 71 ~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 71 ALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred HhCCCCCCEEEEEEecCCceEEEEE
Confidence 9999999999999 555556666
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0045 Score=58.10 Aligned_cols=118 Identities=19% Similarity=0.324 Sum_probs=79.6
Q ss_pred ccCCcccee-cCCCCc-eecccCC--CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEe----CC-----
Q 008336 335 VSGDLDFVV-GKNGGK-VPVSDLA--GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS----SD----- 401 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~-v~l~~~~--gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is----~d----- 401 (569)
...+||..+ +.+|+. .++-++. ++|+||+|.+-.||+=+.-++.++++.++|++. .++-+|.|. .|
T Consensus 76 G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDgW~~~ 154 (237)
T PF00837_consen 76 GGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDGWAFG 154 (237)
T ss_pred CCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCCccCC
Confidence 445688865 888888 8888884 589999999989999999999999999999874 134444432 11
Q ss_pred ---------CC-hh--HHHHHHhcCCCcccccCch-hhHHHHHhcCCCCcc-EEEEECCCCcEEEccchh
Q 008336 402 ---------RD-QT--SFDEFFKGMPWLALPFGDA-RKASLSRKFKVSGIP-MLVAIGPSGRTITKEARD 457 (569)
Q Consensus 402 ---------~~-~~--~~~~~~~~~~~~~~~~~~d-~~~~l~~~~~v~~~P-t~~lid~~G~i~~~~~~~ 457 (569)
++ .+ ...+.+.+.. ...|+..| .++...+.|++ +| .+||| .+|+|++.++.+
T Consensus 155 ~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA--~PeRlyIi-~~gkv~Y~Gg~G 220 (237)
T PF00837_consen 155 NNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGA--LPERLYII-QDGKVVYKGGPG 220 (237)
T ss_pred CCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCC--CcceEEEE-ECCEEEEeCCCC
Confidence 00 11 1122222222 45666554 45677788884 56 35566 699999997543
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0055 Score=47.50 Aligned_cols=59 Identities=25% Similarity=0.489 Sum_probs=41.8
Q ss_pred EecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccEEEE
Q 008336 364 FSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVA 443 (569)
Q Consensus 364 F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~l 443 (569)
+++++|+.|......++++...+. +.+-.+... +. .++ ..|||.++|++ +
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~~-~~----------------------~~~-~~ygv~~vPal-v 54 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDIE-DF----------------------EEI-EKYGVMSVPAL-V 54 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEETT-TH----------------------HHH-HHTT-SSSSEE-E
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEcc-CH----------------------HHH-HHcCCCCCCEE-E
Confidence 367889999999998888877773 444444442 22 235 88999999999 5
Q ss_pred ECCCCcEEEcc
Q 008336 444 IGPSGRTITKE 454 (569)
Q Consensus 444 id~~G~i~~~~ 454 (569)
| ||+++..+
T Consensus 55 I--ng~~~~~G 63 (76)
T PF13192_consen 55 I--NGKVVFVG 63 (76)
T ss_dssp E--TTEEEEES
T ss_pred E--CCEEEEEe
Confidence 5 58888774
|
... |
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.003 Score=46.35 Aligned_cols=59 Identities=34% Similarity=0.558 Sum_probs=42.2
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|..+|||+|++....|.+ .+ +.+-.++++.+.+. .+.+.+..+..++|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~~-i~y~~~dv~~~~~~--------------------~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------KG-IPYEEVDVDEDEEA--------------------REELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------TT-BEEEEEEGGGSHHH--------------------HHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------cC-CeeeEcccccchhH--------------------HHHHHHHcCCCccCE
Confidence 467899999999988777633 23 77788888866431 134556669999999
Q ss_pred EEEECCCCcE
Q 008336 121 LVILDENGKV 130 (569)
Q Consensus 121 ~~lid~~G~i 130 (569)
+++ +|+.
T Consensus 53 v~i---~g~~ 59 (60)
T PF00462_consen 53 VFI---DGKF 59 (60)
T ss_dssp EEE---TTEE
T ss_pred EEE---CCEE
Confidence 886 4554
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0028 Score=53.33 Aligned_cols=74 Identities=22% Similarity=0.552 Sum_probs=46.0
Q ss_pred CCc-EEEEEec-------CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHH
Q 008336 37 KGK-IGLYFSA-------SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (569)
Q Consensus 37 ~gk-vlv~F~a-------~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (569)
.|+ ++|.|++ +|||.|++..|.+.+......+ +..+|.+.+.. +..|++- . ..
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~-r~~Wkdp--------------~--n~ 78 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGD-RPEWKDP--------------N--NP 78 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE----HHHHC-T--------------T--SH
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCC-HHHhCCC--------------C--CC
Confidence 456 7888874 5999999999999999888543 47788777763 3333220 0 12
Q ss_pred HHH--hcCCCCccEEEEECCCCc
Q 008336 109 LDE--LFKVMGIPHLVILDENGK 129 (569)
Q Consensus 109 l~~--~~~v~~~P~~~lid~~G~ 129 (569)
... .+++.++||++-++..++
T Consensus 79 fR~~p~~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 79 FRTDPDLKLKGIPTLIRWETGER 101 (119)
T ss_dssp HHH--CC---SSSEEEECTSS-E
T ss_pred ceEcceeeeeecceEEEECCCCc
Confidence 333 699999999999965544
|
; PDB: 1V9W_A 1WOU_A. |
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0037 Score=60.69 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=57.7
Q ss_pred eecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeC---CC-------------CH-HHHHHHHHh
Q 008336 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG---DE-------------DD-EAFKGYFSK 92 (569)
Q Consensus 31 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~---d~-------------~~-~~~~~~~~~ 92 (569)
+....-.++ +++.|.-+.||+|+++.+++.++.+. |++.|..+.+ .. ++ ..+..+...
T Consensus 110 i~~g~~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~ 185 (251)
T PRK11657 110 ILDGKADAPRIVYVFADPNCPYCKQFWQQARPWVDS----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEAS 185 (251)
T ss_pred ccccCCCCCeEEEEEECCCChhHHHHHHHHHHHhhc----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHh
Confidence 333334567 89999999999999999998876543 3455544432 11 11 112222211
Q ss_pred CCCcc--cccC-C------chhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 93 MPWLA--VPFS-D------SETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 93 ~~~~~--~~~~-~------~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
+.... ..-. . -..+..+.+.+|++++|++++.|.+|++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~ 234 (251)
T PRK11657 186 GGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQ 234 (251)
T ss_pred hhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEE
Confidence 11100 1000 1 112345788999999999999998897543
|
|
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00047 Score=62.58 Aligned_cols=100 Identities=20% Similarity=0.295 Sum_probs=67.7
Q ss_pred CCceeecCCCCCc---EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCc
Q 008336 27 NGDQVKLDSLKGK---IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (569)
Q Consensus 27 ~g~~v~l~~~~gk---vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (569)
+++......-++| ++|.|||.|.|.|++..|.+.++..+|...+ +.+-.|++..-++
T Consensus 131 ~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~-lkFGkvDiGrfpd------------------- 190 (265)
T KOG0914|consen 131 NMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL-LKFGKVDIGRFPD------------------- 190 (265)
T ss_pred chhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCC-CcccceeeccCcC-------------------
Confidence 5554444433444 9999999999999999999999999998775 7777777765432
Q ss_pred hhHHHHHHhcCC------CCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHH
Q 008336 104 ETRDKLDELFKV------MGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVER 153 (569)
Q Consensus 104 ~~~~~l~~~~~v------~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 153 (569)
.+.+|+| +.+||++++ ++|+-+.+.-.. ..+-....++++.+.
T Consensus 191 -----~a~kfris~s~~srQLPT~ilF-q~gkE~~RrP~v-d~~gra~s~~fSeen 239 (265)
T KOG0914|consen 191 -----VAAKFRISLSPGSRQLPTYILF-QKGKEVSRRPDV-DVKGRAVSFPFSEEN 239 (265)
T ss_pred -----hHHheeeccCcccccCCeEEEE-ccchhhhcCccc-cccCCcccccccHHH
Confidence 4566665 468999999 667655542211 112223445666554
|
|
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.02 Score=52.60 Aligned_cols=128 Identities=21% Similarity=0.304 Sum_probs=80.8
Q ss_pred HHHhhcccCCCceEEEECCC-CCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCcccee-cC
Q 008336 268 KLARYFELSTLPTLVIIGPD-GKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVV-GK 345 (569)
Q Consensus 268 ~l~~~f~v~~~Ptlvi~~~~-g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~ 345 (569)
.+++.+++.. |+++++.+. ++...... . .++.+.+..++..... |-+.. +.
T Consensus 32 ~~~~~~~~~~-p~i~~~k~~~~~~~~y~~---------~--~~~~~~l~~fI~~~~~---------------P~v~~~t~ 84 (184)
T PF13848_consen 32 ELAKKYGIKE-PTIVVYKKFDEKPVVYDG---------D--KFTPEELKKFIKKNSF---------------PLVPELTP 84 (184)
T ss_dssp HHHHHCTCSS-SEEEEEECTTTSEEEESS---------S--TTSHHHHHHHHHHHSS---------------TSCEEEST
T ss_pred HHHHHhCCCC-CcEEEeccCCCCceeccc---------c--cCCHHHHHHHHHHhcc---------------ccccccch
Confidence 4667799988 999999863 33221111 0 2577788777764322 22211 21
Q ss_pred CCCceecccCCCCE-EEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCch
Q 008336 346 NGGKVPVSDLAGKT-ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDA 424 (569)
Q Consensus 346 ~g~~v~l~~~~gk~-vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d 424 (569)
. .-..+.. .+++ +++.|..............|.+++++++++ +.++.+..+..+
T Consensus 85 ~-n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~~~-------------------- 139 (184)
T PF13848_consen 85 E-NFEKLFS-SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADDFP-------------------- 139 (184)
T ss_dssp T-HHHHHHS-TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTTTH--------------------
T ss_pred h-hHHHHhc-CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHHhH--------------------
Confidence 1 1111111 2445 777776666666788888888888888765 888888877443
Q ss_pred hhHHHHHhcCCC--CccEEEEECCCCcE
Q 008336 425 RKASLSRKFKVS--GIPMLVAIGPSGRT 450 (569)
Q Consensus 425 ~~~~l~~~~~v~--~~Pt~~lid~~G~i 450 (569)
.+.+.+++. ..|++++++.....
T Consensus 140 ---~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 140 ---RLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp ---HHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred ---HHHHHcCCCCccCCEEEEEECCCCc
Confidence 467788988 89999999855543
|
... |
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0074 Score=56.47 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=55.9
Q ss_pred eeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC--C--------------HHHHHHHHHh
Q 008336 30 QVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE--D--------------DEAFKGYFSK 92 (569)
Q Consensus 30 ~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~--~--------------~~~~~~~~~~ 92 (569)
.+....-.++ .++.|..+.||+|+++.+.+.+ ....-.+.++.+.... . .+.|.++...
T Consensus 69 ~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~ 144 (197)
T cd03020 69 AIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSG 144 (197)
T ss_pred CeEEcCCCCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhC
Confidence 3444444578 9999999999999999998877 1111134444444332 1 1122233322
Q ss_pred CCCc-ccc--cCCchhHHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 93 MPWL-AVP--FSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 93 ~~~~-~~~--~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 131 (569)
.... ... -...+.+..+++.+|++++|+++ + .+|+++
T Consensus 145 ~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 145 GKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred CCCCCCccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 2211 111 12233456788999999999997 4 457653
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0058 Score=59.34 Aligned_cols=93 Identities=17% Similarity=0.247 Sum_probs=56.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC-----CC-----------Ch-hHHHHHHhcCCC--
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS-----DR-----------DQ-TSFDEFFKGMPW-- 416 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~-----d~-----------~~-~~~~~~~~~~~~-- 416 (569)
.++.+++.|..+.||+|+++.+.+.++.+. . +++|..+-. +. ++ ..|..+...+..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g---~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~ 190 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G---KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLG 190 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C---ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccC
Confidence 378999999999999999999988765443 1 255444432 11 11 112222221111
Q ss_pred ccccc--------CchhhHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 417 LALPF--------GDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 417 ~~~~~--------~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
+.-+- ..+.+..+++.+||+++|++++.|.+|.+...
T Consensus 191 ~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 191 LKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV 235 (251)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence 00110 11234568889999999999999999986443
|
|
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0083 Score=46.48 Aligned_cols=59 Identities=32% Similarity=0.522 Sum_probs=41.8
Q ss_pred EEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEE
Q 008336 43 YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLV 122 (569)
Q Consensus 43 ~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~ 122 (569)
.+++++|++|......+.++...+. +.+-.+... +.+ .+ ..||+.++|++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~-~~~-----------------------~~-~~ygv~~vPal- 53 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIE-DFE-----------------------EI-EKYGVMSVPAL- 53 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETT-THH-----------------------HH-HHTT-SSSSEE-
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEcc-CHH-----------------------HH-HHcCCCCCCEE-
Confidence 3468889999999999999988863 444444442 322 45 89999999999
Q ss_pred EECCCCcEEEc
Q 008336 123 ILDENGKVLSD 133 (569)
Q Consensus 123 lid~~G~i~~~ 133 (569)
++ ||+++..
T Consensus 54 vI--ng~~~~~ 62 (76)
T PF13192_consen 54 VI--NGKVVFV 62 (76)
T ss_dssp EE--TTEEEEE
T ss_pred EE--CCEEEEE
Confidence 45 5887753
|
... |
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0058 Score=51.61 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=49.0
Q ss_pred cCCCCCc-EEEEEecC----CCHhhHhh--HHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchh
Q 008336 33 LDSLKGK-IGLYFSAS----WCGPCQRF--TPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSET 105 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~----wC~~C~~~--~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (569)
.+.-.+| ++|+++++ ||..|+.. .|++.+..+ . ++.+++.++.....
T Consensus 12 ~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln----~-~fv~w~~dv~~~eg--------------------- 65 (116)
T cd02991 12 DAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN----T-RMLFWACSVAKPEG--------------------- 65 (116)
T ss_pred HHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH----c-CEEEEEEecCChHH---------------------
Confidence 3445688 99999999 99999876 455555543 2 47777777764432
Q ss_pred HHHHHHhcCCCCccEEEEEC
Q 008336 106 RDKLDELFKVMGIPHLVILD 125 (569)
Q Consensus 106 ~~~l~~~~~v~~~P~~~lid 125 (569)
..++..++++++|++.+++
T Consensus 66 -~~la~~l~~~~~P~~~~l~ 84 (116)
T cd02991 66 -YRVSQALRERTYPFLAMIM 84 (116)
T ss_pred -HHHHHHhCCCCCCEEEEEE
Confidence 4688999999999999994
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0089 Score=57.28 Aligned_cols=94 Identities=20% Similarity=0.334 Sum_probs=56.8
Q ss_pred eecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC---CH----------------HHHHHHH
Q 008336 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE---DD----------------EAFKGYF 90 (569)
Q Consensus 31 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~---~~----------------~~~~~~~ 90 (569)
+....-.|+ +++.|.-+.||+|+++.+++.++.+ .+ +.|..+.... .. ..+.+++
T Consensus 100 i~~g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~ 174 (232)
T PRK10877 100 IVYKAPQEKHVITVFTDITCGYCHKLHEQMKDYNA----LG-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAM 174 (232)
T ss_pred EEecCCCCCEEEEEEECCCChHHHHHHHHHHHHhc----CC-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHH
Confidence 333334578 9999999999999999999887643 23 5555543221 11 1222223
Q ss_pred HhCCCcccc-cCCchhHHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 91 SKMPWLAVP-FSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 91 ~~~~~~~~~-~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 131 (569)
......... -..-..+..+++.+||+++|++++ ++|+++
T Consensus 175 ~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 175 KGKDVSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred cCCCCCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 222211111 122344567899999999999885 467665
|
|
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.012 Score=54.96 Aligned_cols=88 Identities=20% Similarity=0.346 Sum_probs=53.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCh----------------hHHHHHHhcCCCc-cc
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ----------------TSFDEFFKGMPWL-AL 419 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~----------------~~~~~~~~~~~~~-~~ 419 (569)
+++.++.|..+.||+|+++.+.+.+ ...+ -.+.++.+.....+ ..|.++.....-. ..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~-v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----NADG-VTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----ccCc-eEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 7899999999999999999998876 1111 12444444443211 1122222221110 11
Q ss_pred ---ccCchhhHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 420 ---PFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 420 ---~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~ 451 (569)
....+.+..+++.+||+++|+++ + .+|+++
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 11234566889999999999998 5 457764
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0094 Score=43.71 Aligned_cols=59 Identities=17% Similarity=0.325 Sum_probs=41.2
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|+.+|||+|++....|. +. ++..-.++++.+++. ..++.+..+..++|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~----~~-----~i~y~~~dv~~~~~~-------------------~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD----EK-----GIPYEEVDVDEDEEA-------------------REELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH----HT-----TBEEEEEEGGGSHHH-------------------HHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHHH----Hc-----CCeeeEcccccchhH-------------------HHHHHHHcCCCccCE
Confidence 46788999999999988762 22 366677777765421 234555569999999
Q ss_pred EEEECCCCcE
Q 008336 441 LVAIGPSGRT 450 (569)
Q Consensus 441 ~~lid~~G~i 450 (569)
+++ +|+.
T Consensus 53 v~i---~g~~ 59 (60)
T PF00462_consen 53 VFI---DGKF 59 (60)
T ss_dssp EEE---TTEE
T ss_pred EEE---CCEE
Confidence 986 4554
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0067 Score=48.14 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=32.1
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCH
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~ 83 (569)
++.|+.+|||+|++....|.++..++. ++.+..++++.+.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~ 42 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEG 42 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCCh
Confidence 567899999999999999999887642 3777788887653
|
|
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.012 Score=56.50 Aligned_cols=88 Identities=23% Similarity=0.387 Sum_probs=54.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC---Ch----------------hHHHHHHhcCCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQ----------------TSFDEFFKGMPW 416 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~---~~----------------~~~~~~~~~~~~ 416 (569)
.|+.+++.|..+.||+|+++.+.+.++.+ . +++|..+.... .+ ..+...+....-
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----L--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----C--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 37899999999999999999998876533 1 35665543221 10 112222221110
Q ss_pred c--ccccCchhhHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 417 L--ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 417 ~--~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~ 451 (569)
. ......+.+.++++.+||+++|++++ ++|+++
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 0 01112245678899999999999994 478775
|
|
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.023 Score=43.06 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=36.4
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|+++||++|.+....|.+ . ++.+..+++|.+... ..++.+..++.++|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~----~-----~i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE----R-----GIPFEEVDVDEDPEA-------------------LEELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH----C-----CCCeEEEeCCCCHHH-------------------HHHHHHHcCCcccCE
Confidence 467899999999998776654 1 255556666654321 123444457889999
Q ss_pred EEE
Q 008336 441 LVA 443 (569)
Q Consensus 441 ~~l 443 (569)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 875
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.00041 Score=63.94 Aligned_cols=73 Identities=22% Similarity=0.397 Sum_probs=57.6
Q ss_pred CcEEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCC
Q 008336 38 GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 117 (569)
Q Consensus 38 gkvlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 117 (569)
|..++.|+|||||.|....|++.+++.--.+- .+.+..|++..++ .+.-+|-+.+
T Consensus 40 gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL-~v~va~VDvt~np------------------------gLsGRF~vta 94 (248)
T KOG0913|consen 40 GEWMIEFGAPWCPSCSDLIPHLENFATVSLDL-GVKVAKVDVTTNP------------------------GLSGRFLVTA 94 (248)
T ss_pred hHHHHHhcCCCCccccchHHHHhccCCccCCC-ceeEEEEEEEecc------------------------ccceeeEEEe
Confidence 34889999999999999999999987654433 4777777766542 3667888999
Q ss_pred ccEEEEECCCCcEEEcCCc
Q 008336 118 IPHLVILDENGKVLSDGGV 136 (569)
Q Consensus 118 ~P~~~lid~~G~i~~~~~~ 136 (569)
.|++|=+ ++|....+.|.
T Consensus 95 LptIYHv-kDGeFrrysga 112 (248)
T KOG0913|consen 95 LPTIYHV-KDGEFRRYSGA 112 (248)
T ss_pred cceEEEe-eccccccccCc
Confidence 9999998 89988776554
|
|
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0075 Score=48.64 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=48.9
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCh------h-HHHHH--HhcCCCcccccCch-hhHHHH
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ------T-SFDEF--FKGMPWLALPFGDA-RKASLS 430 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~------~-~~~~~--~~~~~~~~~~~~~d-~~~~l~ 430 (569)
+..|+.+.||+|....+.+.++...... ++.+....+.-.. . ..+.. ..... ....+... .....+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 76 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQG-KFEALHEALADTALA 76 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcC-cHHHHHHHHHHHHHH
Confidence 4678999999999999999988744433 4777766553211 1 11111 11100 00000000 445678
Q ss_pred HhcCCCCccEEEEEC
Q 008336 431 RKFKVSGIPMLVAIG 445 (569)
Q Consensus 431 ~~~~v~~~Pt~~lid 445 (569)
+.+|+.++|++++-|
T Consensus 77 ~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 77 RALGVTGTPTFVVNG 91 (98)
T ss_pred HHcCCCCCCEEEECC
Confidence 889999999999976
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.01 Score=57.81 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+..|||.||-+.++.|..+...|..|+.+|.. +.++.|...... +...|...
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~~------------------------~~~~f~~~ 197 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKCP------------------------ASENFPDK 197 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGCC------------------------TTTTS-TT
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhccC------------------------cccCCccc
Confidence 45899999999999999999999999999974 688888765432 46679999
Q ss_pred CccEEEEECCCCcEEEccc
Q 008336 437 GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~ 455 (569)
..|+++++ ++|.++..-.
T Consensus 198 ~LPtllvY-k~G~l~~~~V 215 (265)
T PF02114_consen 198 NLPTLLVY-KNGDLIGNFV 215 (265)
T ss_dssp C-SEEEEE-ETTEEEEEEC
T ss_pred CCCEEEEE-ECCEEEEeEE
Confidence 99999999 7999888743
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0087 Score=47.47 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=45.7
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc--CCCCc
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF--KVSGI 438 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~--~v~~~ 438 (569)
++.|+.+||++|++....|+++..++. ++.+..++++.+.... .++.+.+ ++..+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~----~i~~~~idi~~~~~~~-------------------~el~~~~~~~~~~v 59 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD----DFDYRYVDIHAEGISK-------------------ADLEKTVGKPVETV 59 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc----CCcEEEEECCCChHHH-------------------HHHHHHHCCCCCcC
Confidence 677899999999999999998876642 4677777777553211 1233333 45889
Q ss_pred cEEEEECCCCcEEE
Q 008336 439 PMLVAIGPSGRTIT 452 (569)
Q Consensus 439 Pt~~lid~~G~i~~ 452 (569)
|+++ + +|+.+.
T Consensus 60 P~if-i--~g~~ig 70 (85)
T PRK11200 60 PQIF-V--DQKHIG 70 (85)
T ss_pred CEEE-E--CCEEEc
Confidence 9986 4 566654
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.32 Score=52.78 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=49.5
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
.+.+..-+..|..+.||+|......+++++..- +.+..-.|.....+ +++..|
T Consensus 113 ~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~----~~i~~~~id~~~~~-----------------------~~~~~~ 165 (517)
T PRK15317 113 ALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN----PNITHTMIDGALFQ-----------------------DEVEAR 165 (517)
T ss_pred hcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC----CCceEEEEEchhCH-----------------------hHHHhc
Confidence 334556688899999999998888887766542 24666555443333 588999
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 434 KVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~ 453 (569)
++.++|++++ +|+.+..
T Consensus 166 ~v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 166 NIMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred CCcccCEEEE---CCcEEEe
Confidence 9999999976 3454444
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.01 Score=50.81 Aligned_cols=68 Identities=12% Similarity=0.227 Sum_probs=52.6
Q ss_pred EEEEEe--cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCC
Q 008336 40 IGLYFS--ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 117 (569)
Q Consensus 40 vlv~F~--a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 117 (569)
.+|.|- .--+|-+....-.|.+++++|... ++.++.|++|.++ .++..|||.+
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~~-~v~~akVDiD~~~------------------------~LA~~fgV~s 91 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSE------------------------AIGDRFGVFR 91 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcCC-ceEEEEEECCCCH------------------------HHHHHcCCcc
Confidence 444443 234566777777888888998533 4899999999774 4999999999
Q ss_pred ccEEEEECCCCcEEEc
Q 008336 118 IPHLVILDENGKVLSD 133 (569)
Q Consensus 118 ~P~~~lid~~G~i~~~ 133 (569)
+||++++ ++|+.+..
T Consensus 92 iPTLl~F-kdGk~v~~ 106 (132)
T PRK11509 92 FPATLVF-TGGNYRGV 106 (132)
T ss_pred CCEEEEE-ECCEEEEE
Confidence 9999999 88988864
|
|
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=46.40 Aligned_cols=63 Identities=29% Similarity=0.478 Sum_probs=42.7
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|.++|||+|....+.|.++.. .+.++-++.+.+....+ ..+.+.++..++|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~-------------------~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQ-------------------DYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHH-------------------HHHHHHhCCCCCCe
Confidence 467889999999999888887633 35666666665432211 24566778999999
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
++ + +|+.+
T Consensus 57 v~-~--~g~~i 64 (82)
T cd03419 57 VF-I--GGKFI 64 (82)
T ss_pred EE-E--CCEEE
Confidence 74 4 45443
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.015 Score=46.77 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=48.9
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC--CC-----HHHHHHHHHhC-CCcccccCCchhHHHHHHh
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD--ED-----DEAFKGYFSKM-PWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d--~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 112 (569)
+..|+.+.||+|....+.+.++...... ++.+....+. .. ....+...... ......+.+.-........
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 4679999999999999999998744432 4666666543 22 11111111111 0000001000033467889
Q ss_pred cCCCCccEEEEEC
Q 008336 113 FKVMGIPHLVILD 125 (569)
Q Consensus 113 ~~v~~~P~~~lid 125 (569)
+|+.++|++++-|
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 9999999998875
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.012 Score=49.26 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=54.8
Q ss_pred cchhhhHHHHHHHHH---HhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccCC--CceEEEEC
Q 008336 211 ASAEFTPRLVEVYEK---LKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST--LPTLVIIG 285 (569)
Q Consensus 211 ~c~~~~~~~~~~~~~---~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~~--~Ptlvi~~ 285 (569)
....+.+.+.+++++ ++++ +.|+.+|.+. ....+++||++. +|.+++++
T Consensus 28 ~~~~~~~~~~~vAk~~~~~kgk-----i~Fv~~d~~~---------------------~~~~~~~fgl~~~~~P~i~i~~ 81 (111)
T cd03072 28 DLESLKEFKQAVARQLISEKGA-----INFLTADGDK---------------------FRHPLLHLGKTPADLPVIAIDS 81 (111)
T ss_pred HHHHHHHHHHHHHHHHHhcCce-----EEEEEEechH---------------------hhhHHHHcCCCHhHCCEEEEEc
Confidence 346778888899999 8766 7888888765 445789999985 99999998
Q ss_pred CCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHH
Q 008336 286 PDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRA 323 (569)
Q Consensus 286 ~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 323 (569)
.++...+... .-.++++.+.+|.+...+
T Consensus 82 ~~~~~Ky~~~----------~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 82 FRHMYLFPDF----------EDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred chhcCcCCCC----------ccccCHHHHHHHHHHHhc
Confidence 6542221101 114688999998887654
|
It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site. |
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.021 Score=43.28 Aligned_cols=55 Identities=29% Similarity=0.414 Sum_probs=36.7
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|+++||++|++....|.+ .+ +.+..++++.+.... ..+.+..++.++|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~-i~~~~~~i~~~~~~~--------------------~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG-IPFEEVDVDEDPEAL--------------------EELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC-CCeEEEeCCCCHHHH--------------------HHHHHHcCCcccCE
Confidence 567899999999997776654 22 556666777543311 13444457889998
Q ss_pred EEE
Q 008336 121 LVI 123 (569)
Q Consensus 121 ~~l 123 (569)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 865
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >cd02340 ZZ_NBR1_like Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0028 Score=42.84 Aligned_cols=30 Identities=30% Similarity=0.670 Sum_probs=27.7
Q ss_pred eccCCCCCCCceeEEcCCC-CCCccccccCC
Q 008336 510 SCDGCDEEGRVWAFSCDEC-DFCLHPNCALG 539 (569)
Q Consensus 510 ~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~ 539 (569)
.||+|.+...+-.|+|.+| +|||+..|...
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 5999999999999999999 89999999863
|
Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain. |
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.014 Score=45.66 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=42.2
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|+++|||+|......|.++.. .+.++-++.+.+.... ...+.+..+..++|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~------------------~~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEI------------------QDYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHH------------------HHHHHHHhCCCCCCe
Confidence 467889999999999998876433 2566666666542211 124556678899999
Q ss_pred EEEECCCCcEE
Q 008336 441 LVAIGPSGRTI 451 (569)
Q Consensus 441 ~~lid~~G~i~ 451 (569)
++ + +|+.+
T Consensus 57 v~-~--~g~~i 64 (82)
T cd03419 57 VF-I--GGKFI 64 (82)
T ss_pred EE-E--CCEEE
Confidence 74 4 35554
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.042 Score=41.37 Aligned_cols=60 Identities=32% Similarity=0.440 Sum_probs=40.8
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|.++|||+|+...+.|.+.. +.+..++++.+.+. ...+.+..+...+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~--------------------~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGEL--------------------REELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHH--------------------HHHHHHHhCCCCcCE
Confidence 56788999999999888777552 55667777765431 124555667788897
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
+++ +|+.+
T Consensus 54 ~~~---~~~~i 61 (72)
T cd02066 54 IFI---NGEFI 61 (72)
T ss_pred EEE---CCEEE
Confidence 754 45554
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.064 Score=50.09 Aligned_cols=103 Identities=12% Similarity=0.147 Sum_probs=74.7
Q ss_pred eecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhc-CCCeEEEEEeCCCChhHHH-HHHhcCCCcccccCc--hh
Q 008336 350 VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFD-EFFKGMPWLALPFGD--AR 425 (569)
Q Consensus 350 v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~~vv~is~d~~~~~~~-~~~~~~~~~~~~~~~--d~ 425 (569)
....+..|+++||.+...+|..|...+..|+.|..++... ..++.++.|+--.....++ ..+++.--..+|+.. ..
T Consensus 19 ~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~ 98 (238)
T PF04592_consen 19 DPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDEN 98 (238)
T ss_pred hHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCcc
Confidence 4556678999999999999999999999999999999765 3577888887644433333 233333224577764 24
Q ss_pred hHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 426 KASLSRKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 426 ~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
...++..++-.. =-++|+|+=|++.+.
T Consensus 99 q~dvW~~L~G~k-dD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 99 QPDVWELLNGSK-DDFLIYDRCGRLTYH 125 (238)
T ss_pred ccCHHHHhCCCc-CcEEEEeccCcEEEE
Confidence 456777776543 467899999999987
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.017 Score=53.31 Aligned_cols=67 Identities=19% Similarity=0.349 Sum_probs=52.5
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ ++++|||+||.+|.++...+..+++.++ ++.++.+..+.. ..++..+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~------------------------~eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEF------------------------PEISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhh------------------------hHHHHHHHH
Confidence 677 9999999999999999888888888772 356666555543 358899999
Q ss_pred CCccEEEEECCCCcEE
Q 008336 116 MGIPHLVILDENGKVL 131 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~ 131 (569)
.+.|++..+ ..|+.+
T Consensus 69 ~~vp~~~~~-~~~~~v 83 (227)
T KOG0911|consen 69 EAVPYFVFF-FLGEKV 83 (227)
T ss_pred hcCceeeee-ecchhh
Confidence 999999888 455444
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.76 Score=49.88 Aligned_cols=70 Identities=13% Similarity=0.218 Sum_probs=48.0
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
.+.++.-+..|..+.||+|......+++++... .++..-.|..... .+++..|
T Consensus 114 ~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~----p~i~~~~id~~~~-----------------------~~~~~~~ 166 (515)
T TIGR03140 114 RLNGPLHFETYVSLTCQNCPDVVQALNQMALLN----PNISHTMIDGALF-----------------------QDEVEAL 166 (515)
T ss_pred hcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC----CCceEEEEEchhC-----------------------HHHHHhc
Confidence 344566788899999999998777776665553 2355544443333 3588999
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 434 KVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~ 453 (569)
++.++|++++ +|..+..
T Consensus 167 ~v~~VP~~~i---~~~~~~~ 183 (515)
T TIGR03140 167 GIQGVPAVFL---NGEEFHN 183 (515)
T ss_pred CCcccCEEEE---CCcEEEe
Confidence 9999999986 3444443
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.035 Score=43.29 Aligned_cols=60 Identities=20% Similarity=0.405 Sum_probs=40.7
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
.++.|..+|||+|++....|.+ .| +.+..++++.+.+. ..+....|...+|
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~-------~g-i~y~~idi~~~~~~---------------------~~~~~~~g~~~vP 59 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKE-------KG-YDFEEIPLGNDARG---------------------RSLRAVTGATTVP 59 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHH-------cC-CCcEEEECCCChHH---------------------HHHHHHHCCCCcC
Confidence 5677999999999998777753 23 55566677654331 2355567889999
Q ss_pred EEEEECCCCcEE
Q 008336 120 HLVILDENGKVL 131 (569)
Q Consensus 120 ~~~lid~~G~i~ 131 (569)
.+++ +|+.+
T Consensus 60 ~i~i---~g~~i 68 (79)
T TIGR02190 60 QVFI---GGKLI 68 (79)
T ss_pred eEEE---CCEEE
Confidence 9864 46543
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.031 Score=54.41 Aligned_cols=90 Identities=11% Similarity=0.179 Sum_probs=60.0
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
+. |+|+||-+.++.|..+...|..++.+|. .+.++.|..... .+...|.+.
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp---~vKFvkI~a~~~-------------------------~~~~~f~~~ 197 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYP---EVKFVKIRASKC-------------------------PASENFPDK 197 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T---TSEEEEEEECGC-------------------------CTTTTS-TT
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEEehhcc-------------------------CcccCCccc
Confidence 44 9999999999999999999999999997 477888776532 144678999
Q ss_pred CccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHH
Q 008336 117 GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (569)
.+|+++++ ++|.++..-. .+. +.+. -.++...++.++..
T Consensus 198 ~LPtllvY-k~G~l~~~~V-~l~-~~~g--~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 198 NLPTLLVY-KNGDLIGNFV-GLT-DLLG--DDFFTEDLEAFLIE 236 (265)
T ss_dssp C-SEEEEE-ETTEEEEEEC-TGG-GCT---TT--HHHHHHHHHT
T ss_pred CCCEEEEE-ECCEEEEeEE-ehH-HhcC--CCCCHHHHHHHHHH
Confidence 99999999 6898876421 111 1221 23666777776643
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.077 Score=44.40 Aligned_cols=84 Identities=19% Similarity=0.278 Sum_probs=56.4
Q ss_pred cEEEEEEecC---CcccchhhhHHHHHHHHHHh-cCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhc
Q 008336 198 KTIGLYFSMS---SYKASAEFTPRLVEVYEKLK-GKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (569)
Q Consensus 198 k~v~l~f~~~---~~~~c~~~~~~~~~~~~~~~-~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f 273 (569)
+.+++|+... .-.....+.+.+.+++++++ ++ +.|+.+|.+. ....+++|
T Consensus 16 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gk-----i~Fv~~D~~~---------------------~~~~l~~f 69 (111)
T cd03073 16 PLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRK-----LNFAVADKED---------------------FSHELEEF 69 (111)
T ss_pred CeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCe-----EEEEEEcHHH---------------------HHHHHHHc
Confidence 3445554332 22334567788889999998 55 8888887765 44578999
Q ss_pred ccC--C--CceEEEECCCC-CchhhhhHHHHHhhCCCCCCC-ChHHHHHHHHH
Q 008336 274 ELS--T--LPTLVIIGPDG-KTLHSNVAEAIEEHGVGAFPF-TPEKFAELAEI 320 (569)
Q Consensus 274 ~v~--~--~Ptlvi~~~~g-~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~ 320 (569)
||+ . .|++++++.++ |+... -.+ +.+++.+|.+.
T Consensus 70 gl~~~~~~~P~~~i~~~~~~KY~~~-------------~~~~t~e~i~~F~~~ 109 (111)
T cd03073 70 GLDFSGGEKPVVAIRTAKGKKYVME-------------EEFSDVDALEEFLED 109 (111)
T ss_pred CCCcccCCCCEEEEEeCCCCccCCC-------------cccCCHHHHHHHHHH
Confidence 998 4 99999998655 33210 024 77888887764
|
They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei |
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.044 Score=50.44 Aligned_cols=110 Identities=24% Similarity=0.487 Sum_probs=77.7
Q ss_pred cccee-cCCCCceecccC-CCCE--EEEEEe-----cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHH
Q 008336 339 LDFVV-GKNGGKVPVSDL-AGKT--ILLYFS-----AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 409 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~~-~gk~--vll~F~-----a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~ 409 (569)
.++++ +.+|. ++|.++ .|+. +|-.|. ...|+.|...+..+.-....+..+ ++.++.||-. ..+.+..
T Consensus 47 ~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r--d~tfa~vSra-P~~~i~a 122 (211)
T PF05988_consen 47 KDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR--DTTFAVVSRA-PLEKIEA 122 (211)
T ss_pred CCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC--CceEEEEeCC-CHHHHHH
Confidence 34666 55554 888875 5653 333343 346999999999997777778766 6888888855 4578999
Q ss_pred HHhcCCCcccccCchhhHHHHHhcCC-----CCccEEEEECCC-CcEEEc
Q 008336 410 FFKGMPWLALPFGDARKASLSRKFKV-----SGIPMLVAIGPS-GRTITK 453 (569)
Q Consensus 410 ~~~~~~~~~~~~~~d~~~~l~~~~~v-----~~~Pt~~lid~~-G~i~~~ 453 (569)
|.++|+|- +|..+.....+...|++ ...|.+-++=++ |+|...
T Consensus 123 fk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhT 171 (211)
T PF05988_consen 123 FKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHT 171 (211)
T ss_pred HHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEE
Confidence 99999997 88887777778888887 456755444344 555544
|
|
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.044 Score=45.20 Aligned_cols=71 Identities=21% Similarity=0.430 Sum_probs=48.6
Q ss_pred CCc-EEEEEec--------CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHH
Q 008336 37 KGK-IGLYFSA--------SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (569)
Q Consensus 37 ~gk-vlv~F~a--------~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (569)
+|+ +++.|.+ ||||.|.+..|.+.+..+.... ++.+|.+.+.+- +.|+. .. .
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~r-p~Wk~--------------p~--n 84 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNR-PYWKD--------------PA--N 84 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCC-CcccC--------------CC--C
Confidence 567 8888873 7999999999999999885543 478888777632 21111 00 1
Q ss_pred HHHHhcCC-CCccEEEEECC
Q 008336 108 KLDELFKV-MGIPHLVILDE 126 (569)
Q Consensus 108 ~l~~~~~v-~~~P~~~lid~ 126 (569)
.+.+..++ .++||++=.+.
T Consensus 85 ~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 85 PFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred ccccCCCceeecceeeEEcC
Confidence 24445555 89999988864
|
|
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.063 Score=40.35 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=40.9
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|..+||++|+.....|.+.. +.+..++++.+.+. ...+.+..+...+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~-------------------~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGEL-------------------REELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 45788999999999998876532 44556666655421 134555667788998
Q ss_pred EEEECCCCcEEEc
Q 008336 441 LVAIGPSGRTITK 453 (569)
Q Consensus 441 ~~lid~~G~i~~~ 453 (569)
+++ +|+.+..
T Consensus 54 ~~~---~~~~igg 63 (72)
T cd02066 54 IFI---NGEFIGG 63 (72)
T ss_pred EEE---CCEEEec
Confidence 754 5665553
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.033 Score=46.33 Aligned_cols=67 Identities=15% Similarity=0.271 Sum_probs=39.3
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
-++.|..+|||+|++....|.+..-.. ..+.++-|+-..+...+ ...+.+..|.+.+|
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~~i~i~~~~~~~~~-------------------~~~l~~~tG~~tVP 71 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENEL-------------------RDYFEQITGGRTVP 71 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCc---CCcEEEECCCCCCCHHH-------------------HHHHHHHcCCCCcC
Confidence 456699999999998877766542111 12444444321121111 23566677888999
Q ss_pred EEEEECCCCcEE
Q 008336 120 HLVILDENGKVL 131 (569)
Q Consensus 120 ~~~lid~~G~i~ 131 (569)
++|+ +|+.+
T Consensus 72 ~IfI---~g~~i 80 (108)
T PHA03050 72 RIFF---GKTSI 80 (108)
T ss_pred EEEE---CCEEE
Confidence 8855 36554
|
|
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.043 Score=42.67 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=35.9
Q ss_pred EEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEE
Q 008336 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121 (569)
Q Consensus 42 v~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 121 (569)
..|+.+|||+|.+....|.+. + +.+-.++++.+++.. ..+.+..+...+|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~-------~-i~~~~~di~~~~~~~--------------------~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK-------G-VTFTEIRVDGDPALR--------------------DEMMQRSGRRTVPQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc-------C-CCcEEEEecCCHHHH--------------------HHHHHHhCCCCcCEE
Confidence 568899999999988777643 2 445555666554321 235555678899987
Q ss_pred EE
Q 008336 122 VI 123 (569)
Q Consensus 122 ~l 123 (569)
++
T Consensus 54 ~i 55 (79)
T TIGR02181 54 FI 55 (79)
T ss_pred EE
Confidence 44
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.047 Score=47.14 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=54.7
Q ss_pred hhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccC--CCceEEEECCCC-C
Q 008336 213 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS--TLPTLVIIGPDG-K 289 (569)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~--~~Ptlvi~~~~g-~ 289 (569)
..+...+.+++++++++. +.|+.+|.+. ...+.++|||. ++|++++++.++ +
T Consensus 40 ~~~~~~l~~vAk~~kgk~----i~Fv~vd~~~---------------------~~~~~~~fgl~~~~~P~v~i~~~~~~K 94 (130)
T cd02983 40 NKYLEILKSVAEKFKKKP----WGWLWTEAGA---------------------QLDLEEALNIGGFGYPAMVAINFRKMK 94 (130)
T ss_pred HHHHHHHHHHHHHhcCCc----EEEEEEeCcc---------------------cHHHHHHcCCCccCCCEEEEEecccCc
Confidence 456678888999997653 5566666554 34578999996 599999998765 4
Q ss_pred chhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHh
Q 008336 290 TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEE 326 (569)
Q Consensus 290 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (569)
+... .-+++.+.+.+|.+....+..
T Consensus 95 Y~~~------------~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 95 FATL------------KGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred cccc------------cCccCHHHHHHHHHHHHcCCc
Confidence 3211 115799999999998876553
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.051 Score=44.46 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=38.0
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
-++.|..+|||+|.+....|.+. + +..-.+++|.+++.. + ....+.+..|...+|
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~-------~-i~~~~vdid~~~~~~-~----------------~~~~l~~~tg~~tvP 63 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTL-------G-VNPAVHEIDKEPAGK-D----------------IENALSRLGCSPAVP 63 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-------C-CCCEEEEcCCCccHH-H----------------HHHHHHHhcCCCCcC
Confidence 45668899999999877655543 2 334455555432210 0 012355556788999
Q ss_pred EEEEECCCCcEE
Q 008336 120 HLVILDENGKVL 131 (569)
Q Consensus 120 ~~~lid~~G~i~ 131 (569)
.++ + +|+.+
T Consensus 64 ~Vf-i--~g~~i 72 (99)
T TIGR02189 64 AVF-V--GGKLV 72 (99)
T ss_pred eEE-E--CCEEE
Confidence 874 4 45444
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.25 Score=38.66 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=36.3
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
+..|..+|||+|.+....|.+ .| +.+-.++++.+++.. ..+ +..|...+|+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~g-I~~~~idi~~~~~~~--------------------~~~-~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RG-FDFEMINVDRVPEAA--------------------ETL-RAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CC-CceEEEECCCCHHHH--------------------HHH-HHcCCCCcCE
Confidence 456788999999987766643 34 677777887665421 122 3357789998
Q ss_pred EEE
Q 008336 121 LVI 123 (569)
Q Consensus 121 ~~l 123 (569)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 865
|
|
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.052 Score=43.12 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=27.4
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~ 82 (569)
++.|..+|||+|.+....|.++..++. .+.+..++++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~ 40 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAE 40 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCC
Confidence 567889999999998888877654322 255666666643
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >cd02339 ZZ_Mind_bomb Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.0092 Score=40.66 Aligned_cols=29 Identities=31% Similarity=0.812 Sum_probs=25.9
Q ss_pred eccCCCCCC-CceeEEcCCC-CCCccccccC
Q 008336 510 SCDGCDEEG-RVWAFSCDEC-DFCLHPNCAL 538 (569)
Q Consensus 510 ~c~~C~~~g-~~~~~~~~~~-~~~~~~~~~~ 538 (569)
.||+|++.. .+-.|.|.+| ||||...|..
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence 599999665 5899999999 8999999986
|
Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster. |
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.31 Score=42.82 Aligned_cols=122 Identities=10% Similarity=0.154 Sum_probs=74.5
Q ss_pred CCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHH-HhhcCCCeEEEE-EeCCCC--------hhHHHHHHhcCC
Q 008336 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKK-IKERNESLEVVF-ISSDRD--------QTSFDEFFKGMP 415 (569)
Q Consensus 346 ~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~-~~~~~~~~~vv~-is~d~~--------~~~~~~~~~~~~ 415 (569)
..+..+...+.||+.+|...|-.-..=....|.+..+.+. |... .++... |+.|+. ....+.--+++|
T Consensus 26 ~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d--~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p 103 (160)
T PF09695_consen 26 SYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD--KYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFP 103 (160)
T ss_pred cccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc--ceeEEEEEecccccccchHHHHHHHHHhhhhCC
Confidence 4456677888999999988876544444455555555444 4432 344433 455532 122223333556
Q ss_pred CcccccCchhhHHHHHhcCCCCc-cEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhh
Q 008336 416 WLALPFGDARKASLSRKFKVSGI-PMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 482 (569)
Q Consensus 416 ~~~~~~~~d~~~~l~~~~~v~~~-Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~ 482 (569)
|-.+- .|.++.+.+.+++..- -.++++|++|+|++...+ .+++.++++..+.++
T Consensus 104 ~s~~v--lD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G-----------~Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 104 WSQFV--LDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEG-----------ALSPAEVQQVIALLK 158 (160)
T ss_pred CcEEE--EcCCCceeccccCCCCCceEEEEcCCccEEEEECC-----------CCCHHHHHHHHHHHh
Confidence 65443 3455567777877643 568889999999998544 377888877766554
|
|
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.084 Score=40.45 Aligned_cols=60 Identities=13% Similarity=0.220 Sum_probs=38.5
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC-Ccc
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM-GIP 119 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~P 119 (569)
++.|..+|||+|.+....|.+ .+ +.+-.++++.+.+.. ..+.+..+.. .+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~-i~~~~i~i~~~~~~~--------------------~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KG-VDYEEIDVDGDPALR--------------------EEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CC-CcEEEEECCCCHHHH--------------------HHHHHHhCCCCccC
Confidence 467889999999988777654 22 566667777654321 2344555666 889
Q ss_pred EEEEECCCCcEE
Q 008336 120 HLVILDENGKVL 131 (569)
Q Consensus 120 ~~~lid~~G~i~ 131 (569)
.++ + +|+.+
T Consensus 54 ~v~-i--~g~~i 62 (75)
T cd03418 54 QIF-I--GDVHI 62 (75)
T ss_pred EEE-E--CCEEE
Confidence 765 4 45544
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.078 Score=48.40 Aligned_cols=40 Identities=30% Similarity=0.452 Sum_probs=32.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEe
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~ 78 (569)
.++ .|+.|+...||+|+.+.+.+.++.+++.. ++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcC
Confidence 577 99999999999999999999999998843 35555443
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.079 Score=47.48 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=44.0
Q ss_pred ceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCH
Q 008336 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83 (569)
Q Consensus 29 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~ 83 (569)
..+.+.+-.++ +|+.|+...||+|+++.+.+.++.+++-+.+++.++...+....
T Consensus 3 ~~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 58 (162)
T PF13462_consen 3 YDPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDK 58 (162)
T ss_dssp TSEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSH
T ss_pred CCCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccc
Confidence 34556677788 99999999999999999999999999866667999998875443
|
... |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.097 Score=39.85 Aligned_cols=59 Identities=20% Similarity=0.368 Sum_probs=38.5
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|..+|||+|.+....|.+ .+ +.+..++++.+... ..+....|...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~-i~~~~~~v~~~~~~---------------------~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NG-ISYEEIPLGKDITG---------------------RSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC-CCcEEEECCCChhH---------------------HHHHHHhCCCCcCe
Confidence 566889999999998766653 22 55666666654321 23555578899998
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
++ + +|+.+
T Consensus 54 if-i--~g~~i 61 (72)
T cd03029 54 VF-I--DGELI 61 (72)
T ss_pred EE-E--CCEEE
Confidence 74 5 35543
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.11 Score=39.73 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=39.6
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|..+|||+|++....|.+ .+ +.+..++++.+.+. ...+.+..+...+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~g-i~~~~~di~~~~~~--------------------~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KG-LPYVEINIDIFPER--------------------KAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CC-CceEEEECCCCHHH--------------------HHHHHHHhCCCCcCE
Confidence 456788999999988776664 23 66667777765432 134556667778898
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
+++ +|+.+
T Consensus 55 v~i---~~~~i 62 (73)
T cd03027 55 IFF---NEKLV 62 (73)
T ss_pred EEE---CCEEE
Confidence 744 35444
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.067 Score=42.50 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=40.2
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC--CCCc
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK--VSGI 438 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~--v~~~ 438 (569)
++.|..+|||+|.+....|.++..+.. ++.+..++++.+... ..++.+.++ +..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~~~~~-------------------~~~l~~~~g~~~~tV 58 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHAEGIS-------------------KADLEKTVGKPVETV 58 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCCCHHH-------------------HHHHHHHhCCCCCCc
Confidence 567889999999999998876543321 245555666543211 113444455 4789
Q ss_pred cEEEEECCCCcEE
Q 008336 439 PMLVAIGPSGRTI 451 (569)
Q Consensus 439 Pt~~lid~~G~i~ 451 (569)
|.++ + +|+.+
T Consensus 59 P~if-i--~g~~i 68 (86)
T TIGR02183 59 PQIF-V--DEKHV 68 (86)
T ss_pred CeEE-E--CCEEe
Confidence 9995 4 35543
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.087 Score=41.03 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=41.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
.+.-++.|..+||++|++....|.+ . ++....++++.+.. ...+.+..+..
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~----~-----gi~y~~idi~~~~~--------------------~~~~~~~~g~~ 56 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE----K-----GYDFEEIPLGNDAR--------------------GRSLRAVTGAT 56 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH----c-----CCCcEEEECCCChH--------------------HHHHHHHHCCC
Confidence 3445667899999999999888753 2 24444566665432 12345567889
Q ss_pred CccEEEEECCCCcEE
Q 008336 437 GIPMLVAIGPSGRTI 451 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~ 451 (569)
.+|.+++ +|+.+
T Consensus 57 ~vP~i~i---~g~~i 68 (79)
T TIGR02190 57 TVPQVFI---GGKLI 68 (79)
T ss_pred CcCeEEE---CCEEE
Confidence 9999964 46554
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.13 Score=48.01 Aligned_cols=114 Identities=16% Similarity=0.222 Sum_probs=76.1
Q ss_pred cCccCCceecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC--CEEEEEEeCCCCHHHHH-HHHH
Q 008336 16 SSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG--DFEVIFVSGDEDDEAFK-GYFS 91 (569)
Q Consensus 16 g~~~pdf~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g--~~~vv~v~~d~~~~~~~-~~~~ 91 (569)
-.++|.+.+. | .....+..|+ ++|-+-..+|..|...+..|..+..+|...| +|.++.|+--.....+. ..++
T Consensus 7 C~~~p~W~i~--~-~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~ 83 (238)
T PF04592_consen 7 CKPPPPWKIG--G-QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELK 83 (238)
T ss_pred CCCCCCceEC--C-chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHH
Confidence 3556666432 2 3446677899 8888988899999999999999999998887 78888887654443333 3344
Q ss_pred hCCCcccccC-CchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 92 KMPWLAVPFS-DSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 92 ~~~~~~~~~~-~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+.-...+++. .......++..++-.. =-++|+|+=|++.+.
T Consensus 84 ~r~~~~ipVyqq~~~q~dvW~~L~G~k-dD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 84 RRVSEHIPVYQQDENQPDVWELLNGSK-DDFLIYDRCGRLTYH 125 (238)
T ss_pred HhCCCCCceecCCccccCHHHHhCCCc-CcEEEEeccCcEEEE
Confidence 4333333432 2223345666666443 247888999998874
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.32 Score=38.06 Aligned_cols=54 Identities=20% Similarity=0.400 Sum_probs=36.2
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
+..|..+||++|.+....|.+ + ++.+-.++++.+++.. ..+ +..+...+|+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~--gI~~~~idi~~~~~~~-------------------~~~-~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R--GFDFEMINVDRVPEAA-------------------ETL-RAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C--CCceEEEECCCCHHHH-------------------HHH-HHcCCCCcCE
Confidence 456789999999998777633 2 4666667777654321 122 3357889999
Q ss_pred EEE
Q 008336 441 LVA 443 (569)
Q Consensus 441 ~~l 443 (569)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 965
|
|
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.058 Score=44.86 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=39.6
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|..+|||+|++....|.+..-.. ..++++-|+-..+...+ ...+.+..|.+.+|.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~----~~~~~i~i~~~~~~~~~------------------~~~l~~~tG~~tVP~ 72 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR----GAYEIVDIKEFKPENEL------------------RDYFEQITGGRTVPR 72 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc----CCcEEEECCCCCCCHHH------------------HHHHHHHcCCCCcCE
Confidence 56789999999999888775532111 12445544421111111 234666678889999
Q ss_pred EEEECCCCcEEE
Q 008336 441 LVAIGPSGRTIT 452 (569)
Q Consensus 441 ~~lid~~G~i~~ 452 (569)
+|+ +|+.+.
T Consensus 73 IfI---~g~~iG 81 (108)
T PHA03050 73 IFF---GKTSIG 81 (108)
T ss_pred EEE---CCEEEe
Confidence 954 356543
|
|
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.24 Score=40.62 Aligned_cols=75 Identities=15% Similarity=0.345 Sum_probs=53.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
.++++|+=.++.||........|++.++...++ +.+..+.+-..+ +-...++..|||+
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R-------------------~vSn~IAe~~~V~ 76 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYR-------------------PVSNAIAEDFGVK 76 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGH-------------------HHHHHHHHHHT--
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCc-------------------hhHHHHHHHhCCC
Confidence 678888888999999999999998888776543 777887765443 2346789999997
Q ss_pred -CccEEEEECCCCcEEEcc
Q 008336 437 -GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 -~~Pt~~lid~~G~i~~~~ 454 (569)
.-|-+++| ++|++++..
T Consensus 77 HeSPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 77 HESPQVILI-KNGKVVWHA 94 (105)
T ss_dssp --SSEEEEE-ETTEEEEEE
T ss_pred cCCCcEEEE-ECCEEEEEC
Confidence 57999999 899999874
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle [] | Back alignment and domain information |
|---|
Probab=94.57 E-value=5.3 Score=39.79 Aligned_cols=308 Identities=17% Similarity=0.237 Sum_probs=144.2
Q ss_pred EEEEEecCCCHh--hHhh---HHHHHHHHHH-hcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 40 IGLYFSASWCGP--CQRF---TPILAEVYNE-LSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 40 vlv~F~a~wC~~--C~~~---~p~l~~~~~~-~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
++|+|+.|--.. .+++ ...+-+++.+ +.++ .+.+..|+...+. .+++++
T Consensus 54 l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~-gigfg~VD~~Kd~------------------------klAKKL 108 (383)
T PF01216_consen 54 LVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDK-GIGFGMVDSKKDA------------------------KLAKKL 108 (383)
T ss_dssp EEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGC-TEEEEEEETTTTH------------------------HHHHHH
T ss_pred EEEEEecCCccCHHHHHHHHHHHHHHHHHHHhcccc-CcceEEeccHHHH------------------------HHHHhc
Confidence 667777665322 2111 1223344444 4455 4889988888763 599999
Q ss_pred CCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCce-eecCCCceeee
Q 008336 114 KVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDF-VISSDGRKISV 192 (569)
Q Consensus 114 ~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~-~~~~~~~~~~~ 192 (569)
|+...++++++ ++|+++.++|. ++...+.+++-.- + ..|. +++..-+.-..
T Consensus 109 gv~E~~SiyVf-kd~~~IEydG~------------~saDtLVeFl~dl------------~---edPVeiIn~~~e~~~F 160 (383)
T PF01216_consen 109 GVEEEGSIYVF-KDGEVIEYDGE------------RSADTLVEFLLDL------------L---EDPVEIINNKHELKAF 160 (383)
T ss_dssp T--STTEEEEE-ETTEEEEE-S--------------SHHHHHHHHHHH------------H---SSSEEEE-SHHHHHHH
T ss_pred CccccCcEEEE-ECCcEEEecCc------------cCHHHHHHHHHHh------------c---ccchhhhcChhhhhhh
Confidence 99999999999 78988877653 3344444433211 0 0111 12111110000
Q ss_pred ccc-cCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHh
Q 008336 193 SDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (569)
Q Consensus 193 ~~~-~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~ 271 (569)
... +...++-||.....++.+ .+.++++.+..- + -.|+.++ +.+++
T Consensus 161 e~ied~~klIGyFk~~~s~~yk----~FeeAAe~F~p~---I-kFfAtfd-------------------------~~vAk 207 (383)
T PF01216_consen 161 ERIEDDIKLIGYFKSEDSEHYK----EFEEAAEHFQPY---I-KFFATFD-------------------------KKVAK 207 (383)
T ss_dssp HH--SS-EEEEE-SSTTSHHHH----HHHHHHHHCTTT---S-EEEEE-S-------------------------HHHHH
T ss_pred hhcccceeEEEEeCCCCcHHHH----HHHHHHHhhcCc---e-eEEEEec-------------------------chhhh
Confidence 011 234566667666555544 445566666432 1 2233333 45667
Q ss_pred hcccCCCceEEEECCCC-CchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCccceecCCCCce
Q 008336 272 YFELSTLPTLVIIGPDG-KTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350 (569)
Q Consensus 272 ~f~v~~~Ptlvi~~~~g-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~~~g~~v 350 (569)
.++++ .=.+-++.+-- +.+. +..-|.+.+.+.++++.-+ .+++..+.... =|. +
T Consensus 208 ~L~lK-~nev~fyepF~~~pi~-----------ip~~p~~e~e~~~fi~~h~----rptlrkl~~~~--m~e-------~ 262 (383)
T PF01216_consen 208 KLGLK-LNEVDFYEPFMDEPIT-----------IPGKPYTEEELVEFIEEHK----RPTLRKLRPED--MFE-------T 262 (383)
T ss_dssp HHT-S-TT-EEEE-TTSSSEEE-----------ESSSS--HHHHHHHHHHT-----S-SEEE--GGG--HHH-------H
T ss_pred hcCcc-ccceeeeccccCCCcc-----------CCCCCCCHHHHHHHHHHhc----hhHhhhCChhh--hhh-------h
Confidence 77765 32333333211 1100 0012556777777766333 23333221100 011 1
Q ss_pred ecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHH
Q 008336 351 PVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS 430 (569)
Q Consensus 351 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ 430 (569)
--++..| ..+|.|--.--|.-..++..|+++++...+. .++.||+|..|.-+--. .-.-
T Consensus 263 Wedd~~g-~hIvaFaee~dpdG~efleilk~va~~nt~n-p~LsivwIDPD~fPllv-------------------~yWE 321 (383)
T PF01216_consen 263 WEDDIDG-IHIVAFAEEEDPDGFEFLEILKQVARDNTDN-PDLSIVWIDPDDFPLLV-------------------PYWE 321 (383)
T ss_dssp HHSSSSS-EEEEEE--TTSHHHHHHHHHHHHHHHHCTT--TT--EEEE-GGG-HHHH-------------------HHHH
T ss_pred hcccCCC-ceEEEEecCCCCchHHHHHHHHHHHHhcCcC-CceeEEEECCCCCchhH-------------------HHHH
Confidence 1122324 5556676667788899999999999887654 57999999877654211 1233
Q ss_pred HhcCCC-CccEEEEECCCC-cEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 008336 431 RKFKVS-GIPMLVAIGPSG-RTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 489 (569)
Q Consensus 431 ~~~~v~-~~Pt~~lid~~G-~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~ 489 (569)
+.|+|. .-|.+=++|-.- .-+.....+ .-.-...++|+.-|+..+.+.-
T Consensus 322 ~tF~Idl~~PqIGvVnvtdadsvW~dm~d----------~~d~pt~~~LedWieDVlsg~i 372 (383)
T PF01216_consen 322 KTFGIDLSRPQIGVVNVTDADSVWMDMDD----------DDDLPTAEELEDWIEDVLSGKI 372 (383)
T ss_dssp HHHTT-TTS-EEEEEETTTSEEEEC-STT----------TSS---HHHHHHHHHHHHCTCC
T ss_pred hhcCccccCCceeEEeccccccchhccCC----------cccCCcHHHHHHHHHHHhcCCC
Confidence 456654 248888887543 233332211 1123467788888988886654
|
It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A. |
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.19 Score=38.39 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=38.0
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC-Ccc
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS-GIP 439 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~-~~P 439 (569)
+..|..+|||+|.+....|++. ++.+-.++++.+++.. .++.+..+.. .+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~~~~~~-------------------~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDGDPALR-------------------EEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCCCHHHH-------------------HHHHHHhCCCCccC
Confidence 4578899999999988877541 2455556666554322 2344555666 899
Q ss_pred EEEEECCCCcEE
Q 008336 440 MLVAIGPSGRTI 451 (569)
Q Consensus 440 t~~lid~~G~i~ 451 (569)
.++ + +|+.+
T Consensus 54 ~v~-i--~g~~i 62 (75)
T cd03418 54 QIF-I--GDVHI 62 (75)
T ss_pred EEE-E--CCEEE
Confidence 774 4 35554
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.33 Score=36.93 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=35.2
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccEE
Q 008336 362 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPML 441 (569)
Q Consensus 362 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~ 441 (569)
..|..++||+|++....|++ . ++.+-.++++.+++.. ..+. ..|...+|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~--~i~~~~~di~~~~~~~-------------------~~~~-~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------H--GIAFEEINIDEQPEAI-------------------DYVK-AQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------C--CCceEEEECCCCHHHH-------------------HHHH-HcCCcccCEE
Confidence 45778999999999888753 1 3556666777654321 1233 3488899997
Q ss_pred EE
Q 008336 442 VA 443 (569)
Q Consensus 442 ~l 443 (569)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 55
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.14 Score=39.75 Aligned_cols=60 Identities=15% Similarity=0.294 Sum_probs=37.9
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
+..|+.+|||+|.+....|++. ++.+-.++++.++... .++.+..+...+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~---------~i~~~~~di~~~~~~~-------------------~~~~~~~g~~~vP~ 52 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK---------GVTFTEIRVDGDPALR-------------------DEMMQRSGRRTVPQ 52 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc---------CCCcEEEEecCCHHHH-------------------HHHHHHhCCCCcCE
Confidence 3568899999999999887642 2334444555554211 23555567889999
Q ss_pred EEEECCCCcEE
Q 008336 441 LVAIGPSGRTI 451 (569)
Q Consensus 441 ~~lid~~G~i~ 451 (569)
++ + +|+.+
T Consensus 53 i~-i--~g~~i 60 (79)
T TIGR02181 53 IF-I--GDVHV 60 (79)
T ss_pred EE-E--CCEEE
Confidence 74 4 35544
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.16 Score=38.63 Aligned_cols=53 Identities=25% Similarity=0.341 Sum_probs=35.5
Q ss_pred EEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEE
Q 008336 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121 (569)
Q Consensus 42 v~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 121 (569)
..|..++||+|++....|.+ .+ +.+-.++++.+++.. ..+. ..|...+|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~-i~~~~~di~~~~~~~--------------------~~~~-~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HG-IAFEEINIDEQPEAI--------------------DYVK-AQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC-CceEEEECCCCHHHH--------------------HHHH-HcCCcccCEE
Confidence 45778999999998877764 23 666677777664421 1232 3477889986
Q ss_pred EE
Q 008336 122 VI 123 (569)
Q Consensus 122 ~l 123 (569)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 54
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.48 Score=45.83 Aligned_cols=129 Identities=14% Similarity=0.197 Sum_probs=75.3
Q ss_pred cccee-cCCCCceeccc-CCCCEEEEEEec-CCChhHHhhhHHHHH-HHHHHhhc-CCCeEEEEEeCCCChhHHHHHHh-
Q 008336 339 LDFVV-GKNGGKVPVSD-LAGKTILLYFSA-HWCPPCRAFLPKLID-AYKKIKER-NESLEVVFISSDRDQTSFDEFFK- 412 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~-~~gk~vll~F~a-~wC~~C~~~~~~l~~-l~~~~~~~-~~~~~vv~is~d~~~~~~~~~~~- 412 (569)
|++.. +..|+.+++.+ ++||+.||..+. .|- ..+...+.. ..+++... ...+++|-|++-.+. ++.++.
T Consensus 102 P~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~g---e~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~--~k~~l~~ 176 (252)
T PF05176_consen 102 PNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWG---EEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENW--LKSWLVK 176 (252)
T ss_pred CCCccccCCCCCcccccccCCceEEEEEeehHHH---HHHHHHHhhHHHHHHhhCCCCceEEEEEecchHH--HHHHHHH
Confidence 67765 67777776654 578976665554 343 333333222 33444332 126889999886542 222221
Q ss_pred ----cC----C---CcccccCch--hhHHHHHhcCCC--CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHH
Q 008336 413 ----GM----P---WLALPFGDA--RKASLSRKFKVS--GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 477 (569)
Q Consensus 413 ----~~----~---~~~~~~~~d--~~~~l~~~~~v~--~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 477 (569)
.+ | |-.+-+..+ ....+.+.+++. -+.-+||+|++|+|++...| +-++.+++.|
T Consensus 177 ~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG-----------~At~~E~~~L 245 (252)
T PF05176_consen 177 LFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSG-----------PATPEELESL 245 (252)
T ss_pred HHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccC-----------CCCHHHHHHH
Confidence 11 1 322222222 245677777775 45779999999999998543 3577888888
Q ss_pred HHHhhh
Q 008336 478 DGQYNE 483 (569)
Q Consensus 478 ~~~l~~ 483 (569)
.+.++.
T Consensus 246 ~k~~~~ 251 (252)
T PF05176_consen 246 WKCVKG 251 (252)
T ss_pred HHHHhc
Confidence 776653
|
A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane |
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.25 Score=45.62 Aligned_cols=108 Identities=20% Similarity=0.381 Sum_probs=73.3
Q ss_pred CCceecC-CCceeecCCC-CCc--EEEEEe------cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 20 RDFLIRS-NGDQVKLDSL-KGK--IGLYFS------ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 20 pdf~~~~-~g~~v~l~~~-~gk--vlv~F~------a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
.++..+. +|+ ++|+++ .|+ ++|+.+ ..-|+.|...+..+......+...+ +.++.|+-. ..+.+.+|
T Consensus 47 ~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd-~tfa~vSra-P~~~i~af 123 (211)
T PF05988_consen 47 KDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD-TTFAVVSRA-PLEKIEAF 123 (211)
T ss_pred CCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC-ceEEEEeCC-CHHHHHHH
Confidence 3454443 555 999886 777 555532 4679999999999977777887764 888888766 67889999
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCC-----CCccEEEEECC-CCcEEE
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKV-----MGIPHLVILDE-NGKVLS 132 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~-~G~i~~ 132 (569)
.++++|....++.... .+...|++ ...|.+-++-+ +|+|..
T Consensus 124 k~rmGW~~pw~Ss~gs--~Fn~D~~~~~~~~~~~~g~svF~Rdg~~Vfh 170 (211)
T PF05988_consen 124 KRRMGWTFPWYSSYGS--DFNYDFGVSFDEGGEMPGLSVFLRDGGRVFH 170 (211)
T ss_pred HHhcCCCceEEEcCCC--cccccccceeccCCCceeEEEEEEcCCEEEE
Confidence 9999999665654433 35556776 45565533333 355543
|
|
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.11 Score=45.90 Aligned_cols=40 Identities=28% Similarity=0.487 Sum_probs=31.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~ 79 (569)
.++ +++.|+.++||+|+++.|.+.++..++. ++.++...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP---DVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC---CceEEEEeC
Confidence 467 8999999999999999999999877653 455665443
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.22 Score=37.81 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=38.3
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|..+|||+|.+....|.+ . ++.+..++++.+.. ...+.+..+...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~----~-----~i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE----N-----GISYEEIPLGKDIT--------------------GRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH----c-----CCCcEEEECCCChh--------------------HHHHHHHhCCCCcCe
Confidence 566889999999999877753 2 24455556654431 123455568899999
Q ss_pred EEEECCCCcEE
Q 008336 441 LVAIGPSGRTI 451 (569)
Q Consensus 441 ~~lid~~G~i~ 451 (569)
+ ++| |+.+
T Consensus 54 i-fi~--g~~i 61 (72)
T cd03029 54 V-FID--GELI 61 (72)
T ss_pred E-EEC--CEEE
Confidence 7 453 5554
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.19 Score=44.93 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=38.0
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC
Q 008336 352 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401 (569)
Q Consensus 352 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d 401 (569)
+-+...+++|+.|+...||+|.++.+.+.++.+++-+. ..+.+++..+-
T Consensus 7 ~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~-~~v~~~~~~~~ 55 (162)
T PF13462_consen 7 IGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDP-GKVKFVFRPVP 55 (162)
T ss_dssp ES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-TTEEEEEEESS
T ss_pred ecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC-CceEEEEEEcc
Confidence 34445789999999999999999999999999998221 24888888774
|
... |
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.1 Score=46.13 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=32.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 400 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~ 400 (569)
++++++.|+.++||+|+++.|.+.++..++. ++.++....
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~~~ 44 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP----DVRVVFKEF 44 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEEeC
Confidence 6899999999999999999999988776653 255655543
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.27 Score=37.47 Aligned_cols=61 Identities=23% Similarity=0.264 Sum_probs=39.7
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|..+||++|++....|++ . ++.+..++++.+++. ..++.+..+...+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~--gi~~~~~di~~~~~~-------------------~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------K--GLPYVEINIDIFPER-------------------KAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------C--CCceEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 456788999999999887764 1 355566676655432 234555667778898
Q ss_pred EEEECCCCcEEE
Q 008336 441 LVAIGPSGRTIT 452 (569)
Q Consensus 441 ~~lid~~G~i~~ 452 (569)
+++ +|+.+.
T Consensus 55 v~i---~~~~iG 63 (73)
T cd03027 55 IFF---NEKLVG 63 (73)
T ss_pred EEE---CCEEEe
Confidence 844 355544
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.22 Score=43.22 Aligned_cols=79 Identities=27% Similarity=0.341 Sum_probs=53.0
Q ss_pred cccCccCCceec--------CCCceeecCCC-CCc-EEEEEe--cCCCHh-hHhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 008336 14 LLSSSARDFLIR--------SNGDQVKLDSL-KGK-IGLYFS--ASWCGP-CQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (569)
Q Consensus 14 ~~g~~~pdf~~~--------~~g~~v~l~~~-~gk-vlv~F~--a~wC~~-C~~~~p~l~~~~~~~~~~g~~~vv~v~~d 80 (569)
-+|+..|+..+. ..+.++.++++ +|| ++| |- +...|. |+...|-+.+-+++|+.+|-=+|+.|+++
T Consensus 10 ~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVn 88 (171)
T KOG0541|consen 10 AVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVN 88 (171)
T ss_pred cccCccccccchhhccCccccccceEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecC
Confidence 457788883111 12337888886 788 555 43 223344 67889999999999999884467778887
Q ss_pred CCHHHHHHHHHhCC
Q 008336 81 EDDEAFKGYFSKMP 94 (569)
Q Consensus 81 ~~~~~~~~~~~~~~ 94 (569)
++-....|.+..+
T Consensus 89 -DpFv~~aW~k~~g 101 (171)
T KOG0541|consen 89 -DPFVMKAWAKSLG 101 (171)
T ss_pred -cHHHHHHHHhhcC
Confidence 5666666666554
|
|
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.26 Score=40.12 Aligned_cols=61 Identities=28% Similarity=0.455 Sum_probs=38.2
Q ss_pred EEEEEe----cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 40 IGLYFS----ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 40 vlv~F~----a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
|+|+-. +||||+|.+....|.+. + +.+..++++.+.+ .+ ..+.+..|.
T Consensus 14 Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~-i~~~~~di~~~~~-~~-------------------~~l~~~tg~ 65 (97)
T TIGR00365 14 VVLYMKGTPQFPQCGFSARAVQILKAC-------G-VPFAYVNVLEDPE-IR-------------------QGIKEYSNW 65 (97)
T ss_pred EEEEEccCCCCCCCchHHHHHHHHHHc-------C-CCEEEEECCCCHH-HH-------------------HHHHHHhCC
Confidence 655543 38999999887666553 2 4555666665533 11 245566677
Q ss_pred CCccEEEEECCCCcEE
Q 008336 116 MGIPHLVILDENGKVL 131 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~ 131 (569)
..+|.+++ +|+.+
T Consensus 66 ~tvP~vfi---~g~~i 78 (97)
T TIGR00365 66 PTIPQLYV---KGEFV 78 (97)
T ss_pred CCCCEEEE---CCEEE
Confidence 88998764 46544
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.27 Score=38.65 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=38.8
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|..+|||+|++....|.+. + +....++++.+.+. ...+.+..+...+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------g-i~y~~~dv~~~~~~--------------------~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------G-VSFQEIPIDGDAAK--------------------REEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C-CCcEEEECCCCHHH--------------------HHHHHHHhCCCCcCE
Confidence 4557789999999887776643 2 45555677655431 124556667888997
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
+++ +|+.+
T Consensus 56 i~~---~g~~i 63 (83)
T PRK10638 56 IFI---DAQHI 63 (83)
T ss_pred EEE---CCEEE
Confidence 744 46554
|
|
| >PRK10954 periplasmic protein disulfide isomerase I; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.24 Score=46.60 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=29.7
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEE
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFV 77 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v 77 (569)
.|+ .+|.|+.-.||||.++.+.+ ..+.+.+.+. +.++.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~--v~~~~~ 78 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG--TKMTKY 78 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC--CeEEEe
Confidence 578 89999999999999998876 6777777543 444443
|
|
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.16 Score=41.59 Aligned_cols=63 Identities=17% Similarity=0.291 Sum_probs=37.4
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|..+|||+|.+....|.++ . +..-.+.+|.+++.. +....+.+..|...+|.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~----~-----i~~~~vdid~~~~~~----------------~~~~~l~~~tg~~tvP~ 64 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL----G-----VNPAVHEIDKEPAGK----------------DIENALSRLGCSPAVPA 64 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----C-----CCCEEEEcCCCccHH----------------HHHHHHHHhcCCCCcCe
Confidence 5568899999999988766542 2 223345555443211 11123555567889999
Q ss_pred EEEECCCCcEE
Q 008336 441 LVAIGPSGRTI 451 (569)
Q Consensus 441 ~~lid~~G~i~ 451 (569)
+ +| +|+.+
T Consensus 65 V-fi--~g~~i 72 (99)
T TIGR02189 65 V-FV--GGKLV 72 (99)
T ss_pred E-EE--CCEEE
Confidence 7 45 35544
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.44 Score=39.74 Aligned_cols=62 Identities=11% Similarity=0.321 Sum_probs=51.7
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
.|.|+|-|.-.|-|.|..+-..|.+.++.++.- ..|..+.+|..+ .+.+.|++.
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV~-----------------------~~~~~~~l~ 76 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEVP-----------------------DFVKMYELY 76 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchhh-----------------------hhhhhhccc
Confidence 689999999999999999999999999998753 566667777554 478889999
Q ss_pred CccEEEEE
Q 008336 437 GIPMLVAI 444 (569)
Q Consensus 437 ~~Pt~~li 444 (569)
..|+++++
T Consensus 77 ~p~tvmfF 84 (142)
T KOG3414|consen 77 DPPTVMFF 84 (142)
T ss_pred CCceEEEE
Confidence 99987765
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.54 Score=50.97 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=51.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
+|||+|..-.+||-+|.-|...= .++++-+.+ .+|.|.+|++.- |..+..-..+++..
T Consensus 43 dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~-----~FV~IKVDREER--------------PDvD~~Ym~~~q~~ 103 (667)
T COG1331 43 DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-----NFVPVKVDREER--------------PDVDSLYMNASQAI 103 (667)
T ss_pred CCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh-----CceeeeEChhhc--------------cCHHHHHHHHHHHh
Confidence 79999999999999999987541 223333322 468888887531 11111112333333
Q ss_pred -CCCCccEEEEECCCCcEEEc
Q 008336 434 -KVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 434 -~v~~~Pt~~lid~~G~i~~~ 453 (569)
|-.|.|-++|+-|+|+..+.
T Consensus 104 tG~GGWPLtVfLTPd~kPFfa 124 (667)
T COG1331 104 TGQGGWPLTVFLTPDGKPFFA 124 (667)
T ss_pred ccCCCCceeEEECCCCceeee
Confidence 44589999999999999876
|
|
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.3 Score=42.17 Aligned_cols=116 Identities=22% Similarity=0.307 Sum_probs=70.7
Q ss_pred ccccCccCCceec-C------CC-ceeecCCC-CCcEEEEEe--cCCCHhhHh-hHHHHHHHHHHhcCCCCEEEEEEeCC
Q 008336 13 SLLSSSARDFLIR-S------NG-DQVKLDSL-KGKIGLYFS--ASWCGPCQR-FTPILAEVYNELSRQGDFEVIFVSGD 80 (569)
Q Consensus 13 ~~~g~~~pdf~~~-~------~g-~~v~l~~~-~gkvlv~F~--a~wC~~C~~-~~p~l~~~~~~~~~~g~~~vv~v~~d 80 (569)
..+|+..|..+.. . .| ..++..++ +||.+|.|. +...|.|.. .+|.+.+++++++.+|-=.|+.|+++
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 4578888987442 1 12 34444444 788334454 233455544 79999999999999984467777777
Q ss_pred CCHHHHHHHHHhCCCc-cccc-CCchhHHHHHHhcC-----------CCCccEEEEECCCCcEEE
Q 008336 81 EDDEAFKGYFSKMPWL-AVPF-SDSETRDKLDELFK-----------VMGIPHLVILDENGKVLS 132 (569)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~~~-----------v~~~P~~~lid~~G~i~~ 132 (569)
+.-...+|.+..+.. .+.+ +|.. .++.+..| +++-....++ +||.+..
T Consensus 83 -D~FVm~AWak~~g~~~~I~fi~Dg~--geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~ 143 (165)
T COG0678 83 -DAFVMNAWAKSQGGEGNIKFIPDGN--GEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEK 143 (165)
T ss_pred -cHHHHHHHHHhcCCCccEEEecCCC--chhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEE
Confidence 566667777766654 3333 2222 24555443 4455566777 6787764
|
|
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.19 Score=46.11 Aligned_cols=92 Identities=22% Similarity=0.499 Sum_probs=65.4
Q ss_pred cceecCCCCceecccC-CCCEEEE---EEecC----CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 340 DFVVGKNGGKVPVSDL-AGKTILL---YFSAH----WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 340 ~f~~~~~g~~v~l~~~-~gk~vll---~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
+++.+...-+.+|++| .||.-|| ++++| .|+.|...+..+.-....+... ++.++.||--. .+.+..+.
T Consensus 54 ~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~--dv~lv~VsRAP-l~~l~~~k 130 (247)
T COG4312 54 DYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH--DVTLVAVSRAP-LEELVAYK 130 (247)
T ss_pred eeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc--CceEEEEecCc-HHHHHHHH
Confidence 5666443346777775 4563333 23345 5999999999997777777655 68888887543 37888999
Q ss_pred hcCCCcccccCchhhHHHHHhcCC
Q 008336 412 KGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 412 ~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
++|+|- ||..+.....+.+.|+|
T Consensus 131 ~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 131 RRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred HhcCCc-ceeEeccCccccccccc
Confidence 999987 88877777777777766
|
|
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=93.18 E-value=2.9 Score=36.80 Aligned_cols=129 Identities=14% Similarity=0.306 Sum_probs=68.8
Q ss_pred ccCccCCceecC------CC-----ceeecCCCCCcEEEEEecCCCHhhHhh-HHHHHHHHHH-hcCCCCEEEEEE-eCC
Q 008336 15 LSSSARDFLIRS------NG-----DQVKLDSLKGKIGLYFSASWCGPCQRF-TPILAEVYNE-LSRQGDFEVIFV-SGD 80 (569)
Q Consensus 15 ~g~~~pdf~~~~------~g-----~~v~l~~~~gkvlv~F~a~wC~~C~~~-~p~l~~~~~~-~~~~g~~~vv~v-~~d 80 (569)
+|.+.|...++. +| +..+.+.+.|||.|.++-..-+.-+.+ .|.+..+.+. |... .++...| +.|
T Consensus 3 ~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d-~yqtttIiN~d 81 (160)
T PF09695_consen 3 LGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD-KYQTTTIINLD 81 (160)
T ss_pred CCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc-ceeEEEEEecc
Confidence 578888875432 33 355667889993333433223333444 4444555444 4443 3555444 565
Q ss_pred C----CHHHHHHHHH----hCCCcccccCCchhHHHHHHhcCCCC-ccEEEEECCCCcEEEcCCcceeecccCCCCCccH
Q 008336 81 E----DDEAFKGYFS----KMPWLAVPFSDSETRDKLDELFKVMG-IPHLVILDENGKVLSDGGVEIIREYGVEGYPFTV 151 (569)
Q Consensus 81 ~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~v~~-~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~ 151 (569)
+ +..-++..++ +++|..+. .|.+. .+.+.++... --.++++|++|+|+.. ..| ..++
T Consensus 82 DAi~gt~~fVrss~e~~kk~~p~s~~v-lD~~G--~~~~aW~L~~~~SaiiVlDK~G~V~F~-------k~G----~Ls~ 147 (160)
T PF09695_consen 82 DAIWGTGGFVRSSAEDSKKEFPWSQFV-LDSNG--VVRKAWQLQEESSAIIVLDKQGKVQFV-------KEG----ALSP 147 (160)
T ss_pred cccccchHHHHHHHHHhhhhCCCcEEE-EcCCC--ceeccccCCCCCceEEEEcCCccEEEE-------ECC----CCCH
Confidence 3 2233444443 33443332 33332 3556666643 3567899999999873 222 4567
Q ss_pred HHHHHHH
Q 008336 152 ERIKEMK 158 (569)
Q Consensus 152 ~~i~~~~ 158 (569)
.++..++
T Consensus 148 ~Ev~qVi 154 (160)
T PF09695_consen 148 AEVQQVI 154 (160)
T ss_pred HHHHHHH
Confidence 7666554
|
|
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.41 Score=38.31 Aligned_cols=54 Identities=28% Similarity=0.447 Sum_probs=34.3
Q ss_pred CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECC
Q 008336 47 SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDE 126 (569)
Q Consensus 47 ~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~ 126 (569)
+|||+|.+....|.+. + +.+..++++.+.+ . ...+.+..|...+|.++ +
T Consensus 21 ~~Cp~C~~ak~~L~~~-------~-i~y~~idv~~~~~-~-------------------~~~l~~~~g~~tvP~vf-i-- 69 (90)
T cd03028 21 PRCGFSRKVVQILNQL-------G-VDFGTFDILEDEE-V-------------------RQGLKEYSNWPTFPQLY-V-- 69 (90)
T ss_pred CCCcHHHHHHHHHHHc-------C-CCeEEEEcCCCHH-H-------------------HHHHHHHhCCCCCCEEE-E--
Confidence 7999999877666554 2 4455556655432 1 13466667888999874 4
Q ss_pred CCcEE
Q 008336 127 NGKVL 131 (569)
Q Consensus 127 ~G~i~ 131 (569)
+|+.+
T Consensus 70 ~g~~i 74 (90)
T cd03028 70 NGELV 74 (90)
T ss_pred CCEEE
Confidence 46543
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.48 Score=42.84 Aligned_cols=72 Identities=14% Similarity=0.208 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
+...|++-||-+.-..|+-+-..|+.+++.+-+ ..+|-|+....+ -++.+++|
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~P-----------------------Flv~kL~I 135 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKAP-----------------------FLVTKLNI 135 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccCc-----------------------eeeeeeee
Confidence 356899999999889999999999999988753 467777666554 37889999
Q ss_pred CCccEEEEECCCCcEEEccc
Q 008336 436 SGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~~ 455 (569)
+.+|++.++ ++|+.+.+-.
T Consensus 136 kVLP~v~l~-k~g~~~D~iV 154 (211)
T KOG1672|consen 136 KVLPTVALF-KNGKTVDYVV 154 (211)
T ss_pred eEeeeEEEE-EcCEEEEEEe
Confidence 999999999 8998887743
|
|
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.67 Score=36.33 Aligned_cols=61 Identities=15% Similarity=0.282 Sum_probs=38.9
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|..+|||+|++....|.+. ++....++++.+... ..++.+..+...+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~---------gi~y~~~dv~~~~~~-------------------~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK---------GVSFQEIPIDGDAAK-------------------REEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCCcEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 4567789999999998877642 234444566654321 124556668889998
Q ss_pred EEEECCCCcEEE
Q 008336 441 LVAIGPSGRTIT 452 (569)
Q Consensus 441 ~~lid~~G~i~~ 452 (569)
+++ +|+.+.
T Consensus 56 i~~---~g~~ig 64 (83)
T PRK10638 56 IFI---DAQHIG 64 (83)
T ss_pred EEE---CCEEEe
Confidence 744 466654
|
|
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.57 Score=36.56 Aligned_cols=56 Identities=20% Similarity=0.349 Sum_probs=33.6
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCH-HHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD-EAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
++.|.-++||+|.+....|. ..| +...-+.++... +..+. .+.+..|.+.+|
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g-~~~~~i~~~~~~~~~~~~-------------------~~~~~~g~~tvP 55 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKG-VDYEEIDVDDDEPEEARE-------------------MVKRGKGQRTVP 55 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcC-CCcEEEEecCCcHHHHHH-------------------HHHHhCCCCCcC
Confidence 45677899999998766655 233 444454554332 11111 233334889999
Q ss_pred EEEE
Q 008336 120 HLVI 123 (569)
Q Consensus 120 ~~~l 123 (569)
.+++
T Consensus 56 ~I~i 59 (80)
T COG0695 56 QIFI 59 (80)
T ss_pred EEEE
Confidence 8776
|
|
| >KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.052 Score=50.42 Aligned_cols=69 Identities=22% Similarity=0.493 Sum_probs=50.4
Q ss_pred EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCc
Q 008336 359 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 438 (569)
Q Consensus 359 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~ 438 (569)
-.++.|+++|||.|....|.|...+.--.+- ++.|..|.+..++ -+.-+|-|...
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL--~v~va~VDvt~np-----------------------gLsGRF~vtaL 95 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDL--GVKVAKVDVTTNP-----------------------GLSGRFLVTAL 95 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCC--ceeEEEEEEEecc-----------------------ccceeeEEEec
Confidence 5778999999999999999987765443332 4555555544333 25667889999
Q ss_pred cEEEEECCCCcEEEc
Q 008336 439 PMLVAIGPSGRTITK 453 (569)
Q Consensus 439 Pt~~lid~~G~i~~~ 453 (569)
||+|=+ ++|..+..
T Consensus 96 ptIYHv-kDGeFrry 109 (248)
T KOG0913|consen 96 PTIYHV-KDGEFRRY 109 (248)
T ss_pred ceEEEe-eccccccc
Confidence 999998 88987654
|
|
| >cd02249 ZZ Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.083 Score=36.32 Aligned_cols=32 Identities=34% Similarity=0.695 Sum_probs=28.7
Q ss_pred eeccCCCCCCCceeEEcCCCC-CCccccccCCc
Q 008336 509 YSCDGCDEEGRVWAFSCDECD-FCLHPNCALGE 540 (569)
Q Consensus 509 ~~c~~C~~~g~~~~~~~~~~~-~~~~~~~~~~~ 540 (569)
|.|++|...-.+-.|+|.+|. |||...|....
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence 579999998888999999998 99999999754
|
Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins. |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.57 Score=37.47 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=38.5
Q ss_pred CCEEEEEEec----CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 357 GKTILLYFSA----HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 357 gk~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
+++|+|+--. +|||+|.+....|.+.. +.+..++++.+.+ . ...+.+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~---------i~y~~idv~~~~~-~------------------~~~l~~~ 58 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG---------VDFGTFDILEDEE-V------------------RQGLKEY 58 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC---------CCeEEEEcCCCHH-H------------------HHHHHHH
Confidence 4566665433 79999999888775532 3334444444432 1 2346666
Q ss_pred cCCCCccEEEEECCCCcEE
Q 008336 433 FKVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~ 451 (569)
.+...+|.++ + +|+.+
T Consensus 59 ~g~~tvP~vf-i--~g~~i 74 (90)
T cd03028 59 SNWPTFPQLY-V--NGELV 74 (90)
T ss_pred hCCCCCCEEE-E--CCEEE
Confidence 7888999974 4 36554
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.34 Score=52.61 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=47.2
Q ss_pred CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 35 ~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
.+.++ -+..|.+++||+|+.....+++++.... ++..-.|+....+ ++...|
T Consensus 113 ~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~---~i~~~~id~~~~~------------------------~~~~~~ 165 (517)
T PRK15317 113 ALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP---NITHTMIDGALFQ------------------------DEVEAR 165 (517)
T ss_pred hcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC---CceEEEEEchhCH------------------------hHHHhc
Confidence 34456 7888999999999999888888877532 4666666554443 588899
Q ss_pred CCCCccEEEE
Q 008336 114 KVMGIPHLVI 123 (569)
Q Consensus 114 ~v~~~P~~~l 123 (569)
++.++|++++
T Consensus 166 ~v~~VP~~~i 175 (517)
T PRK15317 166 NIMAVPTVFL 175 (517)
T ss_pred CCcccCEEEE
Confidence 9999999976
|
|
| >KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.86 Score=37.45 Aligned_cols=64 Identities=28% Similarity=0.452 Sum_probs=40.4
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
-+|.|..+||++|++...-|.. +.. ...++-++-+.+...++++ +.+.-+-+.+|
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~g~eiq~~-------------------l~~~tg~~tvP 69 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDEDGSEIQKA-------------------LKKLTGQRTVP 69 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCCcHHHHHH-------------------HHHhcCCCCCC
Confidence 4567999999999985444443 322 3566666665554444443 44445567899
Q ss_pred EEEEECCCCcEE
Q 008336 120 HLVILDENGKVL 131 (569)
Q Consensus 120 ~~~lid~~G~i~ 131 (569)
.+|| +|+.+
T Consensus 70 ~vFI---~Gk~i 78 (104)
T KOG1752|consen 70 NVFI---GGKFI 78 (104)
T ss_pred EEEE---CCEEE
Confidence 8776 57766
|
|
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.68 Score=37.62 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=39.0
Q ss_pred CCEEEEEEe----cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 357 GKTILLYFS----AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 357 gk~vll~F~----a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
.+.|+|+-. .+|||+|.+....|.++ ++.+..++++.+++. ...+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~---------~i~~~~~di~~~~~~-------------------~~~l~~~ 62 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC---------GVPFAYVNVLEDPEI-------------------RQGIKEY 62 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc---------CCCEEEEECCCCHHH-------------------HHHHHHH
Confidence 345555544 38999999988877542 233444555544321 1245555
Q ss_pred cCCCCccEEEEECCCCcEEE
Q 008336 433 FKVSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~ 452 (569)
.|...+|.++ | +|+.+.
T Consensus 63 tg~~tvP~vf-i--~g~~iG 79 (97)
T TIGR00365 63 SNWPTIPQLY-V--KGEFVG 79 (97)
T ss_pred hCCCCCCEEE-E--CCEEEe
Confidence 6778899886 4 355543
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.93 Score=39.26 Aligned_cols=96 Identities=17% Similarity=0.300 Sum_probs=67.3
Q ss_pred CCCCEEEEEEe--cCCChhHHh-hhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCc-ccccCchhhHHHH
Q 008336 355 LAGKTILLYFS--AHWCPPCRA-FLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL-ALPFGDARKASLS 430 (569)
Q Consensus 355 ~~gk~vll~F~--a~wC~~C~~-~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~-~~~~~~d~~~~l~ 430 (569)
++||.|+| |. +...|.|.. .+|.+.+++.+++++. =-.|+.||+++ .-...+|.+..+.- .+.++.|.+.++.
T Consensus 35 f~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~kG-VD~I~cVSVND-~FVm~AWak~~g~~~~I~fi~Dg~geFT 111 (165)
T COG0678 35 FKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAKG-VDEIYCVSVND-AFVMNAWAKSQGGEGNIKFIPDGNGEFT 111 (165)
T ss_pred cCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHcC-CceEEEEEeCc-HHHHHHHHHhcCCCccEEEecCCCchhh
Confidence 35765554 44 456778877 8999999999999762 12677777774 45666777766654 6777788888888
Q ss_pred HhcC-----------CCCccEEEEECCCCcEEEcc
Q 008336 431 RKFK-----------VSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 431 ~~~~-----------v~~~Pt~~lid~~G~i~~~~ 454 (569)
+..| +++.....++ .||++....
T Consensus 112 k~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 112 KAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred hhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence 7765 3445566777 789887764
|
|
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=91.06 E-value=1.6 Score=35.88 Aligned_cols=72 Identities=17% Similarity=0.293 Sum_probs=50.6
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCC-c
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG-I 118 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~-~ 118 (569)
++|+=-++.||-......+|.+.++...+. +.+..+.+-..++. ...++..|||.. -
T Consensus 22 ~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~--~~~y~l~v~~~R~v--------------------Sn~IAe~~~V~HeS 79 (105)
T PF11009_consen 22 VLIFKHSTRCPISAMALREFEKFWEESPDE--IPVYYLDVIEYRPV--------------------SNAIAEDFGVKHES 79 (105)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHH--------------------HHHHHHHHT----S
T ss_pred EEEEEeCCCChhhHHHHHHHHHHhhcCCcc--ceEEEEEEEeCchh--------------------HHHHHHHhCCCcCC
Confidence 666558999999999999999998886542 78888888765542 246899999974 6
Q ss_pred cEEEEECCCCcEEEcC
Q 008336 119 PHLVILDENGKVLSDG 134 (569)
Q Consensus 119 P~~~lid~~G~i~~~~ 134 (569)
|.+++| ++|+++...
T Consensus 80 PQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 80 PQVILI-KNGKVVWHA 94 (105)
T ss_dssp SEEEEE-ETTEEEEEE
T ss_pred CcEEEE-ECCEEEEEC
Confidence 999999 789998753
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.02 E-value=1.3 Score=43.28 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=59.2
Q ss_pred eeecCCCceeeecc---ccCcEEEEEEecCC----cccchhhhHHHHHHHHHHhcCCCce---EEEEeeccccHHHHHHH
Q 008336 181 FVISSDGRKISVSD---LEGKTIGLYFSMSS----YKASAEFTPRLVEVYEKLKGKGESF---EIVLISLDDEEESFKRD 250 (569)
Q Consensus 181 ~~~~~~~~~~~~~~---~~gk~v~l~f~~~~----~~~c~~~~~~~~~~~~~~~~~~~~~---ei~~v~~d~~~~~~~~~ 250 (569)
-++..++++++... ...-.+.++|.+.. |..|.++..++.-++.+.+..+..- .+.|.-+|-++
T Consensus 41 ~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e------ 114 (331)
T KOG2603|consen 41 GVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE------ 114 (331)
T ss_pred CeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc------
Confidence 34555555554332 23345788888754 9999999999988888887554322 34555555543
Q ss_pred hcCCCcccccCCchhHHHHHhhcccCCCceEEEECCC
Q 008336 251 LGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPD 287 (569)
Q Consensus 251 ~~~~~~~~~~~~d~~~~~l~~~f~v~~~Ptlvi~~~~ 287 (569)
..++.+.|+++..|.++++.|.
T Consensus 115 ---------------~p~~Fq~l~ln~~P~l~~f~P~ 136 (331)
T KOG2603|consen 115 ---------------SPQVFQQLNLNNVPHLVLFSPA 136 (331)
T ss_pred ---------------cHHHHHHhcccCCCeEEEeCCC
Confidence 4677889999999999999874
|
|
| >PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex | Back alignment and domain information |
|---|
Probab=90.97 E-value=1.7 Score=42.00 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=66.9
Q ss_pred cCccCCc-eecCCCceeecCC-CCCc--EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC--CEEEEEEeCCCCHH--HHH
Q 008336 16 SSSARDF-LIRSNGDQVKLDS-LKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQG--DFEVIFVSGDEDDE--AFK 87 (569)
Q Consensus 16 g~~~pdf-~~~~~g~~v~l~~-~~gk--vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g--~~~vv~v~~d~~~~--~~~ 87 (569)
....|+| -.+++|+.+++.+ ++|| +|..|+.-|-..|... ......+++.... .++++-|++.++.- -+.
T Consensus 98 AlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~s--w~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~ 175 (252)
T PF05176_consen 98 ALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDS--WTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLV 175 (252)
T ss_pred CCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHH--HhhHHHHHHhhCCCCceEEEEEecchHHHHHHHH
Confidence 3456888 4468888888864 5899 5555666664444332 1112344444343 69999999876532 122
Q ss_pred HHHH-hC----C---Cc-ccccCCchhHHHHHHhcCCC--CccEEEEECCCCcEEEcC
Q 008336 88 GYFS-KM----P---WL-AVPFSDSETRDKLDELFKVM--GIPHLVILDENGKVLSDG 134 (569)
Q Consensus 88 ~~~~-~~----~---~~-~~~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~i~~~~ 134 (569)
.++. .+ + +. ++......-...+.+.+++. -+..+||+|.+|+|+-..
T Consensus 176 ~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWag 233 (252)
T PF05176_consen 176 KLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAG 233 (252)
T ss_pred HHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCc
Confidence 2221 11 1 11 11112111124677788875 468899999999998753
|
A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane |
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.31 Score=44.34 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=33.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEe
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 399 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is 399 (569)
.+++.|+.|+...||+|+.+.+.+.++.++++++ +.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~---v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD---VKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC---ceEEEcC
Confidence 4789999999999999999999999998887543 5555444
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=90.83 E-value=1.7 Score=36.87 Aligned_cols=59 Identities=17% Similarity=0.373 Sum_probs=46.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
.|.|+|-|.-.|=+.|.++-..|.+.+++.+.- ..|..+.++.-+ .+.+.|.+.
T Consensus 20 drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~Vp-----------------------dfn~~yel~ 73 (133)
T PF02966_consen 20 DRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEVP-----------------------DFNQMYELY 73 (133)
T ss_dssp SSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTTH-----------------------CCHHHTTS-
T ss_pred ceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccch-----------------------hhhcccccC
Confidence 699999999999999999999999999998754 667777777665 367788888
Q ss_pred CccEEE
Q 008336 437 GIPMLV 442 (569)
Q Consensus 437 ~~Pt~~ 442 (569)
.|.++
T Consensus 74 -dP~tv 78 (133)
T PF02966_consen 74 -DPCTV 78 (133)
T ss_dssp -SSEEE
T ss_pred -CCeEE
Confidence 77543
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.58 E-value=1.3 Score=34.52 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=16.5
Q ss_pred EEEEecCCChhHHhhhHHHH
Q 008336 361 LLYFSAHWCPPCRAFLPKLI 380 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~ 380 (569)
++.|.-++||+|.+....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45678899999999887765
|
|
| >KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.5 Score=42.72 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=56.7
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+.. |++.||-+.-..|+-+-..|..+++.+-+ ..++-|+....+ -++.+++|
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~P------------------------Flv~kL~I 135 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAP------------------------FLVTKLNI 135 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCc------------------------eeeeeeee
Confidence 344 99999999999999999999999998753 568888777542 37788999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
..+|++.++ ++|..+.+
T Consensus 136 kVLP~v~l~-k~g~~~D~ 152 (211)
T KOG1672|consen 136 KVLPTVALF-KNGKTVDY 152 (211)
T ss_pred eEeeeEEEE-EcCEEEEE
Confidence 999999999 78876653
|
|
| >PRK10824 glutaredoxin-4; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.95 Score=37.97 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=33.1
Q ss_pred CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECC
Q 008336 47 SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDE 126 (569)
Q Consensus 47 ~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~ 126 (569)
||||+|++....|.++- +..-.++++.+.+ .+ ..+.+.-|...+|.+|+
T Consensus 28 p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~-~~-------------------~~l~~~sg~~TVPQIFI--- 76 (115)
T PRK10824 28 PSCGFSAQAVQALSACG--------ERFAYVDILQNPD-IR-------------------AELPKYANWPTFPQLWV--- 76 (115)
T ss_pred CCCchHHHHHHHHHHcC--------CCceEEEecCCHH-HH-------------------HHHHHHhCCCCCCeEEE---
Confidence 69999998877766542 2233345554433 22 23445557788898776
Q ss_pred CCcEE
Q 008336 127 NGKVL 131 (569)
Q Consensus 127 ~G~i~ 131 (569)
+|+.+
T Consensus 77 ~G~~I 81 (115)
T PRK10824 77 DGELV 81 (115)
T ss_pred CCEEE
Confidence 56655
|
|
| >cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs | Back alignment and domain information |
|---|
Probab=89.70 E-value=3.6 Score=36.23 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=11.5
Q ss_pred CChhHHhhhHHHHH
Q 008336 368 WCPPCRAFLPKLID 381 (569)
Q Consensus 368 wC~~C~~~~~~l~~ 381 (569)
+|++|.+....|++
T Consensus 15 t~~~C~~ak~iL~~ 28 (147)
T cd03031 15 TFEDCNNVRAILES 28 (147)
T ss_pred cChhHHHHHHHHHH
Confidence 89999988877654
|
This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive. |
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.59 E-value=0.77 Score=42.31 Aligned_cols=85 Identities=22% Similarity=0.379 Sum_probs=61.5
Q ss_pred CCCceeecCCC-CCc--EEEE--EecC----CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCc
Q 008336 26 SNGDQVKLDSL-KGK--IGLY--FSAS----WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL 96 (569)
Q Consensus 26 ~~g~~v~l~~~-~gk--vlv~--F~a~----wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~ 96 (569)
.+| +.+|+++ .|+ +||| +++| -|+.|..++..+.-....|... ++.++.|+-- ..+.+..|-+.++|.
T Consensus 60 ~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~-dv~lv~VsRA-Pl~~l~~~k~rmGW~ 136 (247)
T COG4312 60 ENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH-DVTLVAVSRA-PLEELVAYKRRMGWQ 136 (247)
T ss_pred CCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc-CceEEEEecC-cHHHHHHHHHhcCCc
Confidence 345 6888876 777 5555 3455 6999999999998888888766 4888888765 567889999999998
Q ss_pred ccccCCchhHHHHHHhcCC
Q 008336 97 AVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~v 115 (569)
+..++..+. .+...|++
T Consensus 137 f~w~Ss~~s--~Fn~Df~v 153 (247)
T COG4312 137 FPWVSSTDS--DFNRDFQV 153 (247)
T ss_pred ceeEeccCc--cccccccc
Confidence 666655443 34455555
|
|
| >KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.59 E-value=1.3 Score=36.39 Aligned_cols=63 Identities=24% Similarity=0.395 Sum_probs=35.8
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
+|.|.-+||+.|.+....|.. +.. ...|+=+.-+.+..+++ ..+.+.-+.+.+|.
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v---~~~vvELD~~~~g~eiq------------------~~l~~~tg~~tvP~ 70 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGV---NPKVVELDEDEDGSEIQ------------------KALKKLTGQRTVPN 70 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCC---CCEEEEccCCCCcHHHH------------------HHHHHhcCCCCCCE
Confidence 456899999999995544433 322 24444443332322222 23344445668898
Q ss_pred EEEECCCCcEE
Q 008336 441 LVAIGPSGRTI 451 (569)
Q Consensus 441 ~~lid~~G~i~ 451 (569)
+|| +|+-+
T Consensus 71 vFI---~Gk~i 78 (104)
T KOG1752|consen 71 VFI---GGKFI 78 (104)
T ss_pred EEE---CCEEE
Confidence 876 47776
|
|
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=89.57 E-value=2 Score=35.99 Aligned_cols=75 Identities=17% Similarity=0.372 Sum_probs=55.4
Q ss_pred CCceeecC--CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCc
Q 008336 27 NGDQVKLD--SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (569)
Q Consensus 27 ~g~~v~l~--~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (569)
+|..|+-+ +-..| |+|-|--.|-|.|.++-..|.+.+..+++- ..|..+++|+-+
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf--a~IylvdideV~-------------------- 67 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF--AVIYLVDIDEVP-------------------- 67 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc--eEEEEEecchhh--------------------
Confidence 44444443 33456 999999999999999999999999998743 455566666443
Q ss_pred hhHHHHHHhcCCCCccEEEEECCC
Q 008336 104 ETRDKLDELFKVMGIPHLVILDEN 127 (569)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~~ 127 (569)
.+.+.|++...|+++++-.+
T Consensus 68 ----~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 68 ----DFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred ----hhhhhhcccCCceEEEEEcC
Confidence 47788999999998776433
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.37 Score=34.13 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=28.5
Q ss_pred cCeeeccCCCCCC---CceeEEcCCCCCCccccccCCc
Q 008336 506 CGVYSCDGCDEEG---RVWAFSCDECDFCLHPNCALGE 540 (569)
Q Consensus 506 ~~~~~c~~C~~~g---~~~~~~~~~~~~~~~~~~~~~~ 540 (569)
..+-.|+-|.+.- ..-.|+|..|++-+|.+|....
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence 6778999999986 6689999999999999999644
|
Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A .... |
| >PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=89.07 E-value=1.8 Score=33.75 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=42.1
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
|+.|..+.|+-|......|.++.... .+.+-.|+++.++ ++.++|+. .+|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI~~d~-----------------------~l~~~Y~~-~IPV 52 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDIDEDP-----------------------ELFEKYGY-RIPV 52 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEETTTTH-----------------------HHHHHSCT-STSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEECCCCH-----------------------HHHHHhcC-CCCE
Confidence 56788999999999988876643332 4889999999765 37888995 7999
Q ss_pred EEEEC
Q 008336 441 LVAIG 445 (569)
Q Consensus 441 ~~lid 445 (569)
+.+-+
T Consensus 53 l~~~~ 57 (81)
T PF05768_consen 53 LHIDG 57 (81)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 77654
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.95 Score=49.11 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=46.2
Q ss_pred CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 35 ~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
.+.++ -+..|..+.||+|+.....+++++.... ++..-.|+.... .++...|
T Consensus 114 ~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p---~i~~~~id~~~~------------------------~~~~~~~ 166 (515)
T TIGR03140 114 RLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP---NISHTMIDGALF------------------------QDEVEAL 166 (515)
T ss_pred hcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC---CceEEEEEchhC------------------------HHHHHhc
Confidence 34566 7888999999999988888888776633 355555554444 3578999
Q ss_pred CCCCccEEEE
Q 008336 114 KVMGIPHLVI 123 (569)
Q Consensus 114 ~v~~~P~~~l 123 (569)
++.++|++++
T Consensus 167 ~v~~VP~~~i 176 (515)
T TIGR03140 167 GIQGVPAVFL 176 (515)
T ss_pred CCcccCEEEE
Confidence 9999999986
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=88.33 E-value=3.1 Score=35.83 Aligned_cols=92 Identities=21% Similarity=0.388 Sum_probs=57.6
Q ss_pred CEEEEEEecC--CChh-H-HhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 358 KTILLYFSAH--WCPP-C-RAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 358 k~vll~F~a~--wC~~-C-~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
..-+|.|.-+ -|.. + ......|.+++++++++ .+.+++++.+... .+.+.|
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk--~i~Fv~vd~~~~~-----------------------~~~~~f 75 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK--PWGWLWTEAGAQL-----------------------DLEEAL 75 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC--cEEEEEEeCcccH-----------------------HHHHHc
Confidence 3455555432 2433 3 34567788899999865 3778888777653 377889
Q ss_pred CCC--CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 008336 434 KVS--GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW 488 (569)
Q Consensus 434 ~v~--~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~ 488 (569)
|+. ++|++++++.++. .+....+ +++.+ .|.+.++..+++.
T Consensus 76 gl~~~~~P~v~i~~~~~~-KY~~~~~----------~~t~e---~i~~Fv~~~l~Gk 118 (130)
T cd02983 76 NIGGFGYPAMVAINFRKM-KFATLKG----------SFSED---GINEFLRELSYGR 118 (130)
T ss_pred CCCccCCCEEEEEecccC-ccccccC----------ccCHH---HHHHHHHHHHcCC
Confidence 985 4999999988765 4441111 24444 4556666666654
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >cd02335 ZZ_ADA2 Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.36 Score=33.66 Aligned_cols=30 Identities=37% Similarity=0.773 Sum_probs=27.1
Q ss_pred eeccCCCCCCCc-eeEEcCCC-CCCccccccC
Q 008336 509 YSCDGCDEEGRV-WAFSCDEC-DFCLHPNCAL 538 (569)
Q Consensus 509 ~~c~~C~~~g~~-~~~~~~~~-~~~~~~~~~~ 538 (569)
|.|++|...... -.|+|.+| +|||=..|..
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhh
Confidence 579999998876 89999999 9999999986
|
Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. |
| >PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme | Back alignment and domain information |
|---|
Probab=87.56 E-value=2.4 Score=35.54 Aligned_cols=52 Identities=10% Similarity=0.202 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 380 IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 380 ~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+...++... ++.+|+|.+... +..++|.+... ..+|+..|++..+-+.+++
T Consensus 3 ~~~~~~l~~~--gv~lv~I~~g~~-~~~~~f~~~~~-~p~~ly~D~~~~lY~~lg~ 54 (115)
T PF13911_consen 3 SRRKPELEAA--GVKLVVIGCGSP-EGIEKFCELTG-FPFPLYVDPERKLYKALGL 54 (115)
T ss_pred hHhHHHHHHc--CCeEEEEEcCCH-HHHHHHHhccC-CCCcEEEeCcHHHHHHhCC
Confidence 3344555544 688888887754 34777776644 3555666666666555554
|
|
| >PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=87.32 E-value=3.4 Score=32.15 Aligned_cols=56 Identities=34% Similarity=0.391 Sum_probs=41.9
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
|+.|..+.|+-|......|.++.... .+.+..|+++.++ .+..+|+. .+|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~------------------------~l~~~Y~~-~IPV 52 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDP------------------------ELFEKYGY-RIPV 52 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTH------------------------HHHHHSCT-STSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCH------------------------HHHHHhcC-CCCE
Confidence 67788999999998888877754432 4889999999764 37788995 7998
Q ss_pred EEEEC
Q 008336 121 LVILD 125 (569)
Q Consensus 121 ~~lid 125 (569)
+.+-+
T Consensus 53 l~~~~ 57 (81)
T PF05768_consen 53 LHIDG 57 (81)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 66643
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A. |
| >PF13778 DUF4174: Domain of unknown function (DUF4174) | Back alignment and domain information |
|---|
Probab=87.31 E-value=5.6 Score=33.61 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=52.6
Q ss_pred cccCCCCEEEEEEecCC--ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHH
Q 008336 352 VSDLAGKTILLYFSAHW--CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 429 (569)
Q Consensus 352 l~~~~gk~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l 429 (569)
|++++++.-+|..+|+. -+.=+.++..|.+....+.++ ++.++.+.-+.... ..-+........+
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR--di~v~~i~~~~~~~-----------~~~~~~~~~~~~l 69 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER--DIVVIVITGDGARS-----------PGKPLSPEDIQAL 69 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC--ceEEEEEeCCcccc-----------ccCcCCHHHHHHH
Confidence 55667765555555543 334556666676666667666 56666653332211 1112222334567
Q ss_pred HHhcCCC-CccEEEEECCCCcEEEc
Q 008336 430 SRKFKVS-GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 430 ~~~~~v~-~~Pt~~lid~~G~i~~~ 453 (569)
.+.|++. +.-+++||++||.+..+
T Consensus 70 r~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 70 RKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred HHHhCCCCCceEEEEEeCCCcEEEe
Confidence 8888865 33578999999999887
|
|
| >PRK10824 glutaredoxin-4; Provisional | Back alignment and domain information |
|---|
Probab=87.05 E-value=1.3 Score=37.22 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=36.8
Q ss_pred CCEEEEEEec----CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 357 GKTILLYFSA----HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 357 gk~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
.+.|+|+--+ ||||+|++....|.++ .- .+.. +.++.+.+ .. ..+.+.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~----~i---~~~~--idi~~d~~-~~------------------~~l~~~ 65 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC----GE---RFAY--VDILQNPD-IR------------------AELPKY 65 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc----CC---CceE--EEecCCHH-HH------------------HHHHHH
Confidence 3455554333 6999999998877653 21 2333 34454432 11 234444
Q ss_pred cCCCCccEEEEECCCCcEE
Q 008336 433 FKVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~ 451 (569)
-|-..+|.+|| +|+-|
T Consensus 66 sg~~TVPQIFI---~G~~I 81 (115)
T PRK10824 66 ANWPTFPQLWV---DGELV 81 (115)
T ss_pred hCCCCCCeEEE---CCEEE
Confidence 57778888776 46655
|
|
| >COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.96 E-value=1.8 Score=32.63 Aligned_cols=70 Identities=19% Similarity=0.421 Sum_probs=44.4
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHh---cCCCcccccCchhhHHHHHhcCCCCc
Q 008336 362 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK---GMPWLALPFGDARKASLSRKFKVSGI 438 (569)
Q Consensus 362 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~---~~~~~~~~~~~d~~~~l~~~~~v~~~ 438 (569)
+.|++..||.|......|.++.-. ++ +|.+-.+-..+++|+. +++ .-+-.+..|--||
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~-------yd--~VeIt~Sm~NlKrFl~lRDs~~----------~Fd~vk~~gyiGI 65 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD-------YD--FVEITESMANLKRFLHLRDSRP----------EFDEVKSNGYIGI 65 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC-------ce--eeehhhhhhhHHHHHhhhccch----------hHHhhhhcCcccc
Confidence 568999999998887766544222 23 3334444566777765 332 1123566788899
Q ss_pred cEEEEECCCCcEEE
Q 008336 439 PMLVAIGPSGRTIT 452 (569)
Q Consensus 439 Pt~~lid~~G~i~~ 452 (569)
|.+.+ .+|+++-
T Consensus 66 Pall~--~d~~vVl 77 (85)
T COG4545 66 PALLT--DDGKVVL 77 (85)
T ss_pred eEEEe--CCCcEEE
Confidence 99876 4677765
|
|
| >COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.26 E-value=3.5 Score=31.07 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=46.3
Q ss_pred EEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEE
Q 008336 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121 (569)
Q Consensus 42 v~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 121 (569)
+.|+|..||.|.....+|.++. +..=.|.+..+-.++++|+.-.. +...=.-.+.+|--|+|.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~--------v~yd~VeIt~Sm~NlKrFl~lRD--------s~~~Fd~vk~~gyiGIPal 68 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN--------VDYDFVEITESMANLKRFLHLRD--------SRPEFDEVKSNGYIGIPAL 68 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC--------CCceeeehhhhhhhHHHHHhhhc--------cchhHHhhhhcCcccceEE
Confidence 4689999999987776666552 33344455566677888876332 1111123466788899987
Q ss_pred EEECCCCcEEE
Q 008336 122 VILDENGKVLS 132 (569)
Q Consensus 122 ~lid~~G~i~~ 132 (569)
.+ .+|+++-
T Consensus 69 l~--~d~~vVl 77 (85)
T COG4545 69 LT--DDGKVVL 77 (85)
T ss_pred Ee--CCCcEEE
Confidence 66 4676664
|
|
| >cd02341 ZZ_ZZZ3 Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=85.59 E-value=0.47 Score=32.86 Aligned_cols=31 Identities=32% Similarity=0.805 Sum_probs=27.2
Q ss_pred eeccCCCC-CCCceeEEcCCCC---CCccccccCC
Q 008336 509 YSCDGCDE-EGRVWAFSCDECD---FCLHPNCALG 539 (569)
Q Consensus 509 ~~c~~C~~-~g~~~~~~~~~~~---~~~~~~~~~~ 539 (569)
|.||+|.. .-.+-.|+|..|. |||=..|...
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~ 35 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVK 35 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhC
Confidence 67999998 6688999999998 9999999853
|
Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. |
| >PF13778 DUF4174: Domain of unknown function (DUF4174) | Back alignment and domain information |
|---|
Probab=84.47 E-value=14 Score=31.14 Aligned_cols=103 Identities=19% Similarity=0.188 Sum_probs=62.9
Q ss_pred ecCCCCCc--EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHH
Q 008336 32 KLDSLKGK--IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (569)
Q Consensus 32 ~l~~~~gk--vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (569)
.|++++++ +||.|- ..--+.=..++..|.+....+.+. ++.++.+.-+..... ....+......
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR-di~v~~i~~~~~~~~------------~~~~~~~~~~~ 68 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER-DIVVIVITGDGARSP------------GKPLSPEDIQA 68 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC-ceEEEEEeCCccccc------------cCcCCHHHHHH
Confidence 36677777 555554 234456677788888877788877 477777744432110 01122223356
Q ss_pred HHHhcCCC-CccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHH
Q 008336 109 LDELFKVM-GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMK 158 (569)
Q Consensus 109 l~~~~~v~-~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 158 (569)
+.+.|++. +.-+.+||+++|.+..+ ...|.+.+.|-+.+
T Consensus 69 lr~~l~~~~~~f~~vLiGKDG~vK~r-----------~~~p~~~~~lf~~I 108 (118)
T PF13778_consen 69 LRKRLRIPPGGFTVVLIGKDGGVKLR-----------WPEPIDPEELFDTI 108 (118)
T ss_pred HHHHhCCCCCceEEEEEeCCCcEEEe-----------cCCCCCHHHHHHHH
Confidence 88888865 33577999999988764 22356666665544
|
|
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=84.46 E-value=6.8 Score=33.38 Aligned_cols=61 Identities=16% Similarity=0.399 Sum_probs=46.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
..| |+|-|-..|-+.|.++-..|.+.+++++.- ..|..++.++-+ .+.+.|.+
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~--a~IY~vDi~~Vp------------------------dfn~~yel 72 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF--AVIYLVDIDEVP------------------------DFNQMYEL 72 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--EEEEEEETTTTH------------------------CCHHHTTS
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc--eEEEEEEcccch------------------------hhhccccc
Confidence 467 999999999999999999999999998753 566777777553 36677888
Q ss_pred CCccEEEEE
Q 008336 116 MGIPHLVIL 124 (569)
Q Consensus 116 ~~~P~~~li 124 (569)
. .|.++++
T Consensus 73 ~-dP~tvmF 80 (133)
T PF02966_consen 73 Y-DPCTVMF 80 (133)
T ss_dssp --SSEEEEE
T ss_pred C-CCeEEEE
Confidence 8 7776444
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
| >cd00029 C1 Protein kinase C conserved region 1 (C1) | Back alignment and domain information |
|---|
Probab=84.44 E-value=0.69 Score=32.09 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=28.2
Q ss_pred CeeeccCCCCCCCc---eeEEcCCCCCCccccccCCc
Q 008336 507 GVYSCDGCDEEGRV---WAFSCDECDFCLHPNCALGE 540 (569)
Q Consensus 507 ~~~~c~~C~~~g~~---~~~~~~~~~~~~~~~~~~~~ 540 (569)
++-.|+.|...-.+ .+|.|..|.+-+|++|+...
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v 46 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKV 46 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhccC
Confidence 45678899887553 89999999999999999654
|
Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis). |
| >PRK10954 periplasmic protein disulfide isomerase I; Provisional | Back alignment and domain information |
|---|
Probab=84.31 E-value=1.1 Score=42.24 Aligned_cols=42 Identities=26% Similarity=0.431 Sum_probs=31.6
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISS 400 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~ 400 (569)
.|++.|+.|+...||+|..+.+.+ ..+.+.+.++ +.++.+.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~---v~~~~~~~ 80 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG---TKMTKYHV 80 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC---CeEEEecc
Confidence 378889999999999999999866 6677777543 55554443
|
|
| >PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A | Back alignment and domain information |
|---|
Probab=84.29 E-value=0.3 Score=31.54 Aligned_cols=18 Identities=28% Similarity=0.731 Sum_probs=12.3
Q ss_pred eEEcCCCCCCccccccCC
Q 008336 522 AFSCDECDFCLHPNCALG 539 (569)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~ 539 (569)
..+|..|+..+|..|-=.
T Consensus 4 ll~C~~C~v~VH~~CYGv 21 (36)
T PF13831_consen 4 LLFCDNCNVAVHQSCYGV 21 (36)
T ss_dssp EEE-SSS--EEEHHHHT-
T ss_pred eEEeCCCCCcCChhhCCc
Confidence 578999999999999843
|
|
| >cd02343 ZZ_EF Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=83.76 E-value=0.57 Score=32.26 Aligned_cols=30 Identities=47% Similarity=0.986 Sum_probs=26.1
Q ss_pred eccCCCCCCCceeEEcCCC-CCCccccccCC
Q 008336 510 SCDGCDEEGRVWAFSCDEC-DFCLHPNCALG 539 (569)
Q Consensus 510 ~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~ 539 (569)
.||+|+..-.+..|+|.+| ||||=..|...
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 4999998888899999999 59998899853
|
Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. |
| >PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=83.39 E-value=2.5 Score=44.30 Aligned_cols=63 Identities=11% Similarity=0.202 Sum_probs=36.6
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|..+|||+|++....|.+. | +..-.|+++.++.. .++.++.+- ..+....|.+++|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------g-i~~~~idi~~~~~~-~~~~~~~~~-----------~~~~~~~g~~tvP~ 63 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------D-IPFTQISLDDDVKR-AEFYAEVNK-----------NILLVEEHIRTVPQ 63 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------C-CCeEEEECCCChhH-HHHHHHHhh-----------ccccccCCCCccCe
Confidence 5678999999999876665542 3 55556677655432 122111100 01233467788998
Q ss_pred EEE
Q 008336 121 LVI 123 (569)
Q Consensus 121 ~~l 123 (569)
+++
T Consensus 64 ifi 66 (410)
T PRK12759 64 IFV 66 (410)
T ss_pred EEE
Confidence 866
|
|
| >KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7 | Back alignment and domain information |
|---|
Probab=83.23 E-value=0.57 Score=33.14 Aligned_cols=29 Identities=28% Similarity=0.685 Sum_probs=24.0
Q ss_pred CeeeccCCCCCC---CceeEEcCCCCCCcccc
Q 008336 507 GVYSCDGCDEEG---RVWAFSCDECDFCLHPN 535 (569)
Q Consensus 507 ~~~~c~~C~~~g---~~~~~~~~~~~~~~~~~ 535 (569)
-.|+|.+|..+- +.=+.+|.+|+|++--+
T Consensus 19 miYiCgdC~~en~lk~~D~irCReCG~RIlyK 50 (62)
T KOG3507|consen 19 MIYICGDCGQENTLKRGDVIRCRECGYRILYK 50 (62)
T ss_pred EEEEeccccccccccCCCcEehhhcchHHHHH
Confidence 369999998874 56899999999998644
|
0 [Transcription] |
| >KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.95 E-value=12 Score=36.68 Aligned_cols=87 Identities=15% Similarity=0.268 Sum_probs=59.2
Q ss_pred cCCCCceecccCCCCEEEEEEecC----CChhHHhhhHHHHHHHHHHhhcC---CCeEEEEEeCCCChhHHHHHHhcCCC
Q 008336 344 GKNGGKVPVSDLAGKTILLYFSAH----WCPPCRAFLPKLIDAYKKIKERN---ESLEVVFISSDRDQTSFDEFFKGMPW 416 (569)
Q Consensus 344 ~~~g~~v~l~~~~gk~vll~F~a~----wC~~C~~~~~~l~~l~~~~~~~~---~~~~vv~is~d~~~~~~~~~~~~~~~ 416 (569)
+.+...+.....++=.+++.|.|. .|.-|..+..++.-+++.+.... .+-++.+..+|-+.
T Consensus 47 ~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e------------ 114 (331)
T KOG2603|consen 47 DDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE------------ 114 (331)
T ss_pred CcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc------------
Confidence 334445555555555677777765 49999999999999998887542 22345554444332
Q ss_pred cccccCchhhHHHHHhcCCCCccEEEEECCC-CcEE
Q 008336 417 LALPFGDARKASLSRKFKVSGIPMLVAIGPS-GRTI 451 (569)
Q Consensus 417 ~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~-G~i~ 451 (569)
..++-+.++++..|+++++.|. |++.
T Consensus 115 ---------~p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 115 ---------SPQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred ---------cHHHHHHhcccCCCeEEEeCCCccccc
Confidence 2357889999999999999654 6655
|
|
| >PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines | Back alignment and domain information |
|---|
Probab=82.24 E-value=0.77 Score=27.20 Aligned_cols=23 Identities=26% Similarity=0.584 Sum_probs=21.1
Q ss_pred eccCCCCCCCceeEEcCCCCCCc
Q 008336 510 SCDGCDEEGRVWAFSCDECDFCL 532 (569)
Q Consensus 510 ~c~~C~~~g~~~~~~~~~~~~~~ 532 (569)
.|+.|+.+-..-+-.|+.|+|++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48999999999999999999986
|
Several members are annotated as putative helicases. |
| >cd02342 ZZ_UBA_plant Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=80.98 E-value=0.99 Score=30.11 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=25.8
Q ss_pred eccCCCCCC-CceeEEcCCC-CCCccccccCCc
Q 008336 510 SCDGCDEEG-RVWAFSCDEC-DFCLHPNCALGE 540 (569)
Q Consensus 510 ~c~~C~~~g-~~~~~~~~~~-~~~~~~~~~~~~ 540 (569)
.||+|.... -+..|.|..| ||||=..|....
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~ 34 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRM 34 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhhh
Confidence 599999865 7799999977 699999998543
|
Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding. |
| >PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=80.37 E-value=3.5 Score=43.20 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=36.6
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
|+.|..+|||+|.+....|.+. ++..-.|++|.++. ..++.++.. ...+.+..|.+.+|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~---------gi~~~~idi~~~~~-~~~~~~~~~----------~~~~~~~~g~~tvP~ 63 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN---------DIPFTQISLDDDVK-RAEFYAEVN----------KNILLVEEHIRTVPQ 63 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---------CCCeEEEECCCChh-HHHHHHHHh----------hccccccCCCCccCe
Confidence 5678999999999988776542 24444556665432 122222111 001333467888999
Q ss_pred EEE
Q 008336 441 LVA 443 (569)
Q Consensus 441 ~~l 443 (569)
+++
T Consensus 64 ifi 66 (410)
T PRK12759 64 IFV 66 (410)
T ss_pred EEE
Confidence 865
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 569 | ||||
| 1okd_A | 154 | Nmr-Structure Of Tryparedoxin 1 Length = 154 | 2e-23 | ||
| 1okd_A | 154 | Nmr-Structure Of Tryparedoxin 1 Length = 154 | 1e-21 | ||
| 1ewx_A | 146 | Crystal Structure Of Native Tryparedoxin I From Cri | 2e-23 | ||
| 1ewx_A | 146 | Crystal Structure Of Native Tryparedoxin I From Cri | 1e-21 | ||
| 1qk8_A | 146 | Tryparedoxin-I From Crithidia Fasciculata Length = | 2e-23 | ||
| 1qk8_A | 146 | Tryparedoxin-I From Crithidia Fasciculata Length = | 1e-21 | ||
| 1ezk_A | 153 | Crystal Structure Of Recombinant Tryparedoxin I Len | 2e-23 | ||
| 1ezk_A | 153 | Crystal Structure Of Recombinant Tryparedoxin I Len | 1e-21 | ||
| 1fg4_A | 149 | Structure Of Tryparedoxin Ii Length = 149 | 1e-22 | ||
| 1o6j_A | 150 | Tryparedoxin Ii From C.Fasciculata Solved By Sulphu | 1e-22 | ||
| 1o81_A | 152 | Tryparedoxin Ii From C.fasciculata Solved By Sulphu | 1e-22 | ||
| 1oc9_A | 152 | Tryparedoxin Ii From C.Fasciculata Solved By Mr Len | 2e-22 | ||
| 1o8x_A | 146 | Mutant Tryparedoxin-I Cys43ala Length = 146 | 2e-22 | ||
| 1o8x_A | 146 | Mutant Tryparedoxin-I Cys43ala Length = 146 | 2e-20 | ||
| 1v5n_A | 89 | Solution Structure Of Dc1 Domain Of Pdi-Like Hypoth | 3e-22 | ||
| 1i5g_A | 144 | Tryparedoxin Ii Complexed With Glutathionylspermidi | 1e-21 | ||
| 1o73_A | 144 | Tryparedoxin From Trypanosoma Brucei Length = 144 | 1e-20 | ||
| 1o73_A | 144 | Tryparedoxin From Trypanosoma Brucei Length = 144 | 4e-20 | ||
| 3s9f_A | 165 | The Structure Of Tryparedoxin I From Leishmania Maj | 3e-20 | ||
| 3s9f_A | 165 | The Structure Of Tryparedoxin I From Leishmania Maj | 9e-20 | ||
| 2lus_A | 143 | Nmr Structure Of Carcinoscorpius Rotundicauda Thior | 2e-17 | ||
| 2ls5_A | 159 | Solution Structure Of A Putative Protein Disulfide | 4e-08 | ||
| 2lja_A | 152 | Solution Structure Of A Putative Thiol-Disulfide Ox | 2e-07 | ||
| 2lja_A | 152 | Solution Structure Of A Putative Thiol-Disulfide Ox | 7e-05 | ||
| 1st9_A | 143 | Crystal Structure Of A Soluble Domain Of Resa In Th | 7e-07 | ||
| 2h1b_A | 143 | Resa E80q Length = 143 | 9e-07 | ||
| 2lrn_A | 152 | Solution Structure Of A Thiol:disulfide Interchange | 1e-06 | ||
| 3c71_A | 143 | Struture Of A Resa Variant With A Dsba-Like Active | 1e-06 | ||
| 3kcm_A | 154 | The Crystal Structure Of Thioredoxin Protein From G | 5e-06 | ||
| 3kcm_A | 154 | The Crystal Structure Of Thioredoxin Protein From G | 6e-04 | ||
| 2h19_A | 143 | Crystal Structure Of Resa Cys77ala Variant Length = | 9e-06 | ||
| 2h1a_A | 143 | Resa C74a Variant Length = 143 | 9e-06 | ||
| 3c73_A | 140 | Structure Of Cehc Variant Resa Length = 140 | 1e-05 | ||
| 2lrt_A | 152 | Solution Structure Of The Uncharacterized Thioredox | 1e-05 | ||
| 2f9s_A | 151 | 2nd Crystal Structure Of A Soluble Domain Of Resa I | 3e-05 | ||
| 1jfu_A | 186 | Crystal Structure Of The Soluble Domain Of Tlpa Fro | 4e-05 | ||
| 3gl3_A | 152 | Crystal Structure Of A Putative Thiol:disulfide Int | 6e-05 | ||
| 2h1g_A | 143 | Resa C74aC77A Length = 143 | 2e-04 | ||
| 3erw_A | 145 | Crystal Structure Of Stoa From Bacillus Subtilis Le | 6e-04 | ||
| 4evm_A | 138 | 1.5 Angstrom Crystal Structure Of Soluble Domain Of | 8e-04 |
| >pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I Length = 153 | Back alignment and structure |
|
| >pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I Length = 153 | Back alignment and structure |
|
| >pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii Length = 149 | Back alignment and structure |
|
| >pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur Phasing Length = 150 | Back alignment and structure |
|
| >pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur Phasing Length = 152 | Back alignment and structure |
|
| >pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr Length = 152 | Back alignment and structure |
|
| >pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala Length = 146 | Back alignment and structure |
|
| >pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala Length = 146 | Back alignment and structure |
|
| >pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana Length = 89 | Back alignment and structure |
|
| >pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine Length = 144 | Back alignment and structure |
|
| >pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei Length = 144 | Back alignment and structure |
|
| >pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei Length = 144 | Back alignment and structure |
|
| >pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major Length = 165 | Back alignment and structure |
|
| >pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major Length = 165 | Back alignment and structure |
|
| >pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin Related Protein 16 And Its Role In Regulating Transcription Factor Nf-Kb Activity Length = 143 | Back alignment and structure |
|
| >pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide Isomerase From Bacteroides Thetaiotaomicron Length = 159 | Back alignment and structure |
|
| >pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide Oxidoreductase From Bacteroides Vulgatus Length = 152 | Back alignment and structure |
|
| >pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide Oxidoreductase From Bacteroides Vulgatus Length = 152 | Back alignment and structure |
|
| >pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The Oxidised Form Length = 143 | Back alignment and structure |
|
| >pdb|2H1B|A Chain A, Resa E80q Length = 143 | Back alignment and structure |
|
| >pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange Protein From Bacteroides Sp. Length = 152 | Back alignment and structure |
|
| >pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site Motif (Cphc) Length = 143 | Back alignment and structure |
|
| >pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From Geobacter Metallireducens Length = 154 | Back alignment and structure |
|
| >pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From Geobacter Metallireducens Length = 154 | Back alignment and structure |
|
| >pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant Length = 143 | Back alignment and structure |
|
| >pdb|2H1A|A Chain A, Resa C74a Variant Length = 143 | Back alignment and structure |
|
| >pdb|3C73|A Chain A, Structure Of Cehc Variant Resa Length = 140 | Back alignment and structure |
|
| >pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like Protein Bvu_1432 From Bacteroides Vulgatus Length = 152 | Back alignment and structure |
|
| >pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The Oxidised Form Length = 151 | Back alignment and structure |
|
| >pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From Bradyrhizobium Japonicum Length = 186 | Back alignment and structure |
|
| >pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide Interchange Protein Dsbe From Chlorobium Tepidum Length = 152 | Back alignment and structure |
|
| >pdb|2H1G|A Chain A, Resa C74aC77A Length = 143 | Back alignment and structure |
|
| >pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis Length = 145 | Back alignment and structure |
|
| >pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of Membrane-Anchored Thioredoxin Family Protein From Streptococcus Pneumoniae Strain Canada Mdr_19a Length = 138 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 569 | |||
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 4e-50 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 2e-41 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 1e-29 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 1e-49 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 1e-43 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 9e-31 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 1e-48 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 4e-42 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 1e-28 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 3e-48 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 6e-43 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 1e-29 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 1e-44 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 4e-39 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 1e-30 | |
| 1v5n_A | 89 | PDI-like hypothetical protein AT1G60420; DC1 domai | 1e-29 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 3e-28 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 3e-20 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 2e-14 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 4e-27 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 6e-20 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 3e-12 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 3e-22 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 1e-21 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 2e-13 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 7e-22 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 2e-21 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 1e-16 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 8e-22 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 3e-21 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 1e-13 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 2e-21 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 5e-19 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 1e-13 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 9e-20 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 1e-18 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 5e-11 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 1e-19 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 3e-18 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 4e-10 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 2e-19 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 1e-18 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 1e-10 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 4e-19 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 2e-17 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 8e-10 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 1e-18 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 1e-17 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 2e-10 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 2e-18 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 2e-18 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 3e-10 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 3e-18 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 2e-16 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 1e-10 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 1e-17 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 3e-15 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 1e-07 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 2e-17 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 6e-16 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 1e-10 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 2e-17 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 8e-15 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 6e-06 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 4e-17 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 2e-16 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 2e-08 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 5e-17 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 1e-16 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 7e-07 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 7e-17 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 5e-16 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 3e-10 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 1e-16 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 1e-15 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 4e-09 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 3e-16 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 4e-15 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 3e-11 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 1e-15 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 1e-15 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 6e-09 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 1e-14 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 3e-13 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 5e-06 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 2e-14 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 3e-13 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 2e-07 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 2e-14 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 5e-14 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 5e-05 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 3e-14 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 1e-12 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 2e-06 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 4e-14 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 1e-11 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 1e-05 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 1e-13 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 8e-13 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 8e-08 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 2e-13 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 4e-13 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 4e-07 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 2e-13 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 4e-13 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 3e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-09 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 8e-11 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 1e-04 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 2e-08 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 2e-06 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 3e-08 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 5e-04 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 4e-08 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 1e-05 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 5e-08 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 2e-06 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 8e-08 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 5e-05 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 5e-07 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 3e-05 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 5e-07 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 2e-06 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 3e-06 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 4e-06 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 4e-04 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 4e-06 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 3e-04 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 7e-06 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 7e-06 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 8e-05 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 1e-05 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 1e-05 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 2e-05 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 7e-04 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 3e-05 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 3e-05 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 3e-05 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 3e-05 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 4e-05 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 4e-05 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 4e-05 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 5e-05 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 4e-05 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 5e-05 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 5e-05 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 5e-05 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 5e-05 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 5e-05 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 7e-05 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 7e-05 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 2e-04 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 8e-05 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 9e-05 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 9e-05 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 3e-04 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 1e-04 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 1e-04 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 1e-04 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 1e-04 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 1e-04 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 2e-04 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 2e-04 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 2e-04 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 2e-04 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 2e-04 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 2e-04 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 2e-04 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 3e-04 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 3e-04 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 4e-04 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 5e-04 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 5e-04 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 5e-04 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 5e-04 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 5e-04 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 7e-04 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 9e-04 |
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 4e-50
Identities = 55/142 (38%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG 70
S L +R +V++ SL GK + YFSASWC P + FTP L E Y++
Sbjct: 2 SGLDKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESK 61
Query: 71 DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGK 129
+FEV+F + DE+++ F GYF+KMPWLAVPF+ SE KL + F V IP L+ +D ++G
Sbjct: 62 NFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGD 121
Query: 130 VLS-DGGVEIIREYGVEGYPFT 150
V++ ++++ E +P+
Sbjct: 122 VVTTRARATLVKDPEGEQFPWK 143
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-41
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 4/130 (3%)
Query: 345 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
+ G+V V LAGK + YFSA WCPP R F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 16 RGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 74
Query: 405 TSFDEFFKGMPWLALPFGDA-RKASLSRKFKVSGIPMLVAIGP-SGRTITKEAR-DMIAV 461
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR ++
Sbjct: 75 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKD 134
Query: 462 HGAEAYPFTE 471
E +P+ +
Sbjct: 135 PEGEQFPWKD 144
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-29
Identities = 40/136 (29%), Positives = 74/136 (54%), Gaps = 5/136 (3%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
+ ++ V L GK + YFS S + FTP+L+E Y+K + ++FE+V
Sbjct: 10 GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFH-ESKNFEVVFC 68
Query: 239 SLDDEEESFKRDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPD-GKTLHSNV- 295
+ D+EE+ F MPWLA+PF + ++ +KL+++F + ++PTL+ + D G + +
Sbjct: 69 TWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRAR 128
Query: 296 AEAIEEHGVGAFPFTP 311
A +++ FP+
Sbjct: 129 ATLVKDPEGEQFPWKD 144
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 1e-49
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 2 NMNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILA 60
+ + + +R D +DSL GK + YFSASWC PC+ FTP L
Sbjct: 12 SGLVPRGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLV 71
Query: 61 EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120
E Y + +FE+I S DE+++ F Y++KMPWL++PF++ + L + + V IP
Sbjct: 72 EFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPT 131
Query: 121 LVILD-ENGKVLSDGGV-EIIREYGVEGYPFTVE 152
L+ L+ + G ++ + ++ E +P+ E
Sbjct: 132 LIGLNADTGDTVTTRARHALTQDPMGEQFPWRDE 165
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 1e-43
Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 326 ESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKK 385
+ V + K + L+GKT+ YFSA WCPPCR F P+L++ Y+K
Sbjct: 17 RGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEK 76
Query: 386 IKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAI 444
+ +++ E++ S D ++ F+ ++ MPWL++PF + +L++K+ V IP L+ +
Sbjct: 77 HHD-SKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGL 135
Query: 445 GP-SGRTITKEARDMIAVHG-AEAYPFTEE 472
+G T+T AR + E +P+ +E
Sbjct: 136 NADTGDTVTTRARHALTQDPMGEQFPWRDE 165
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 9e-31
Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 172 SVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGE 231
V + + L GKT+ YFS S FTP+LVE YEK
Sbjct: 23 GVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKN 82
Query: 232 SFEIVLISLDDEEESFKRDLGSMPWLALPFKDKS-REKLARYFELSTLPTLVIIGPD-GK 289
FEI+L S D+EE+ F MPWL++PF +++ E L + + + ++PTL+ + D G
Sbjct: 83 -FEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGD 141
Query: 290 TLHSNVAEAIEEHGVG-AFPFTPE 312
T+ + A+ + +G FP+ E
Sbjct: 142 TVTTRARHALTQDPMGEQFPWRDE 165
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 1e-48
Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
Query: 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG 70
S L+ + S +V L SL GK + LYFSASWC PC+ FTP+LAE Y +
Sbjct: 2 SGLAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAK 61
Query: 71 DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGK 129
+FEV+ +S DE++ F Y+ KMPWLA+PF T +L + F V IP L+ ++ + G
Sbjct: 62 NFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGA 121
Query: 130 VLS-DGGVEIIREYGVEGYPFT 150
++ +I + +P+
Sbjct: 122 IIGTQARTRVIEDPDGANFPWP 143
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 4e-42
Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Query: 340 DF-VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 398
+ G+V + L GKT+ LYFSA WCPPCR F P L + Y+K ++ EVV I
Sbjct: 10 GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-VAKNFEVVLI 68
Query: 399 SSDRDQTSFDEFFKGMPWLALPFG-DARKASLSRKFKVSGIPMLVAIGP-SGRTITKEAR 456
S D +++ F +++ MPWLALPF + + L + F V IP L+ I +G I +AR
Sbjct: 69 SWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQAR 128
Query: 457 -DMIAVHGAEAYPFTE 471
+I +P+
Sbjct: 129 TRVIEDPDGANFPWPN 144
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-28
Identities = 50/135 (37%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
+ S ++S+ L GKT+ LYFS S FTP L E YEK ++FE+VLI
Sbjct: 10 GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-VAKNFEVVLI 68
Query: 239 SLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTLPTLVIIGPD-GKTLHSNV- 295
S D+ E F G MPWLALPF +S +L + F + ++PTL+ I D G + +
Sbjct: 69 SWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQAR 128
Query: 296 AEAIEEHGVGAFPFT 310
IE+ FP+
Sbjct: 129 TRVIEDPDGANFPWP 143
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 3e-48
Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 3/136 (2%)
Query: 18 SARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
+++ + L SL GK + YFSASWC P + FTP L + Y + + +FEV+
Sbjct: 8 PYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVML 67
Query: 77 VSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS-DG 134
+S DE E FK Y++KMPWLA+PF D + + L F V IP LV ++ ++G +++
Sbjct: 68 ISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQA 127
Query: 135 GVEIIREYGVEGYPFT 150
++++ + +P+
Sbjct: 128 RTMVVKDPEAKDFPWP 143
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 6e-43
Identities = 55/135 (40%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 340 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 399
V+ + + LAGKT+ YFSA WCPP RAF P+LID YK E ++ EV+ IS
Sbjct: 11 TNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAE-KKNFEVMLIS 69
Query: 400 SDRDQTSFDEFFKGMPWLALPFGDA-RKASLSRKFKVSGIPMLVAIGP-SGRTITKEARD 457
D F +++ MPWLALPF D L+ F V IP LV + SG IT +AR
Sbjct: 70 WDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQART 129
Query: 458 MIAVH-GAEAYPFTE 471
M+ A+ +P+
Sbjct: 130 MVVKDPEAKDFPWPN 144
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-29
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
Query: 179 RDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
V+ I++ L GKT+ YFS S S FTP+L++ Y+ + ++FE++LI
Sbjct: 10 STNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHA-EKKNFEVMLI 68
Query: 239 SLDDEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPD-GKTLHSNVA 296
S D+ E FK MPWLALPF+D K E L F++ ++PTLV + D G + +
Sbjct: 69 SWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQAR 128
Query: 297 EAIEEHGVG-AFPFT 310
+ + FP+
Sbjct: 129 TMVVKDPEAKDFPWP 143
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 1e-44
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 4/130 (3%)
Query: 342 VVGKNGGKVPVSDLA--GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 399
+V KN +V ++ I YFSAHWCPPCR F P L D Y ++ + + E++F+S
Sbjct: 9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68
Query: 400 SDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARD 457
SDR + ++ WLA+P+ ++++ K+ ++GIP LV + G I+ R
Sbjct: 69 SDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRG 128
Query: 458 MIAVHGAEAY 467
+ G A+
Sbjct: 129 EVQSLGPRAF 138
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 4e-39
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 23 LIRSNGDQVKLDSLKGK---IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVS 78
L++ N +V + IG YFSA WC PC+ FTPILA++Y+EL FE+IFVS
Sbjct: 9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68
Query: 79 GDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGV 136
D ++ Y + WLA+P+ + + + GIP LVI+ ++G ++S G
Sbjct: 69 SDRSEDDMFQYMMESHGDWLAIPYRS-GPASNVTAKYGITGIPALVIVKKDGTLISMNGR 127
Query: 137 EIIREYGVEGY 147
++ G +
Sbjct: 128 GEVQSLGPRAF 138
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-30
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 182 VISSDGRKISVSDL--EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS 239
++ + +++ ++ + IG YFS FTP L ++Y +L FEI+ +S
Sbjct: 9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68
Query: 240 LDDEEESFKRDLG--SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297
D E+ + + WLA+P++ + + ++ +P LVI+ DG + N
Sbjct: 69 SDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRG 128
Query: 298 AIEEHGVGAF 307
++ G AF
Sbjct: 129 EVQSLGPRAF 138
|
| >1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 1e-29
Identities = 48/88 (54%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Query: 463 GAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVW 521
G+ TEER+KEI+ +Y+E+AK WP+ VKH LH EHEL L R VY+CD C+EEG +W
Sbjct: 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60
Query: 522 AFSCDECDFCLHPNCALGEDKGTKDDKS 549
++ CDECDF LH CAL ED S
Sbjct: 61 SYHCDECDFDLHAKCALNEDTKESGPSS 88
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 3e-28
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEV--YNELSRQGDFEV 74
A DF + +GD ++ LK + L+F C C++F + AE+ + E+ G V
Sbjct: 7 AADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRV 66
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-D 133
+ + DE+ E + MP + + + +L+ + P + +LD +V+ D
Sbjct: 67 LAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKD 126
Query: 134 GGVEIIREY 142
+E + +Y
Sbjct: 127 TSMEQLIDY 135
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 3e-20
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 8/116 (6%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDA---YKKIKERNESLEVVFISSDR 402
+G +S L + +L+F C CR F + + ++ L V+ I D
Sbjct: 16 HGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAIYPDE 73
Query: 403 DQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456
++ + W+ + A + + + P + + R I K+
Sbjct: 74 NREEWATKAVYMPQGWIVG-WNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKDTS 128
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-14
Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 8/128 (6%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVE---VYEKLKGKGESFEI 235
DF ++ G +S L+ + L+F +F E E ++ +
Sbjct: 9 DFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRV 66
Query: 236 VLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTLPTLVIIGPDGKTLHSN 294
+ I D+ E + MP + +K+ + + + +++ PT+ ++ + + +
Sbjct: 67 LAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKD 126
Query: 295 V-AEAIEE 301
E + +
Sbjct: 127 TSMEQLID 134
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 4e-27
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 5/129 (3%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVY--NELSRQGDFEV 74
A +F +G + L + L+ + C C L N + +V
Sbjct: 11 ALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKV 70
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-D 133
+ + DE+ + +K + + D E K L+ + IP L +LD+N VL D
Sbjct: 71 LSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD 130
Query: 134 GGVEIIREY 142
++ + +Y
Sbjct: 131 ATLQKVEQY 139
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 6e-20
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 5/121 (4%)
Query: 340 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKE-RNESLEVVF 397
+F +G K + + LL+ + C C + L + + L+V+
Sbjct: 13 NFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLS 72
Query: 398 ISSDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 455
I D + + + W + + + IP L + + + K+A
Sbjct: 73 IYPDEELDEWKKHRNDFAKEWTNG-YDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDA 131
Query: 456 R 456
Sbjct: 132 T 132
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-12
Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 8/128 (6%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVE---VYEKLKGKGESFEI 235
+F G K ++ + L+ + A AE L + K ++
Sbjct: 13 NFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK--LKV 70
Query: 236 VLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTLPTLVIIGPDGKTLHSN 294
+ I D+E + +K+ DK K ++L +PTL ++ + L +
Sbjct: 71 LSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD 130
Query: 295 V-AEAIEE 301
+ +E+
Sbjct: 131 ATLQKVEQ 138
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 3e-22
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 16 SSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFE 73
+ SA F NG V L LKGK I + A+WCGPC+ P L E+ + + +
Sbjct: 7 NPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD-IH 65
Query: 74 VIFVSGDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ +S D++ +A++ +K + + + T + + + GIP ++LD +GK++
Sbjct: 66 FVSLSCDKNKKAWENMVTKDQLKGIQLHMG---TDRTFMDAYLINGIPRFILLDRDGKII 122
Query: 132 SDGGVEIIREYGVEGYPFTVERIKEM 157
S P T E+ E+
Sbjct: 123 S-------ANMTRPSDPKTAEKFNEL 141
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 1e-21
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 340 DF-VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 398
F NG V ++DL GK I + A WC PCR LP L + +K ++ + V +
Sbjct: 12 SFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSL 69
Query: 399 SSDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456
S D+++ +++ + + L G + + ++GIP + + G+ I+
Sbjct: 70 SCDKNKKAWENMVTKDQLKGIQLHMG--TDRTFMDAYLINGIPRFILLDRDGKIISANM- 126
Query: 457 DMIAVHGAEAYPFTEERMKEI 477
+ P T E+ E+
Sbjct: 127 ------TRPSDPKTAEKFNEL 141
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-13
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 26/147 (17%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
F +G+ +S++DL+GK I + A+ E P L E+ EK GK
Sbjct: 12 SFSYPDINGKTVSLADLKGKYIYIDVW-----ATWCGPCRGEL-PALKELEEKYAGKD-- 63
Query: 233 FEIVLISLDDEEESFKRDLGS--MPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKT 290
V +S D +++++ + + + L + ++ +P +++ DGK
Sbjct: 64 IHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDR--TFMDAYLINGIPRFILLDRDGKI 121
Query: 291 LHSNVAEAIEEHGVGAFPFTPEKFAEL 317
+ +N+ + P T EKF EL
Sbjct: 122 ISANM-------TRPSDPKTAEKFNEL 141
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 7e-22
Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
G ++DL GK +L+ F+ + A L + Y K + E+ IS D D+
Sbjct: 24 KGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEH 81
Query: 406 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456
+ +PW+ + + +S + V+ +P + + + +
Sbjct: 82 FWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGEN 132
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-21
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 17 SSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
+S D L G+ L LKGK + + F+ L E+YN+ + QG FE+
Sbjct: 13 ASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG-FEI 71
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
+S D D+ +K +PW+ V + L+ V +P + +++ N ++ +
Sbjct: 72 YQISLDGDEHFWKTSADNLPWVCV-RDANGAYSSYISLYNVTNLPSVFLVNRNNELSA 128
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 1e-16
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
D + G S++DL+GK + + F++ + SA L E+Y K +G FEI I
Sbjct: 17 DIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQI 74
Query: 239 SLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK--------- 289
SLD +E +K ++PW+ + + + + ++ LP++ ++ + +
Sbjct: 75 SLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGENIK 134
Query: 290 TLHSNVAEAIEEH 302
L + + +E H
Sbjct: 135 DLDEAIKKLLEGH 147
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 8e-22
Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 12/148 (8%)
Query: 340 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 398
G V ++D GK +L+ F C CR P L+ Y K++ + +
Sbjct: 11 AITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGV 68
Query: 399 SSDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456
S+DR + + + + W + + + + G P ++ + P G+ + KE R
Sbjct: 69 STDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELR 128
Query: 457 DMIAVHGAEAYPFTEERMKEI-DGQYNE 483
G + Y E+ + +G ++
Sbjct: 129 ------GDDLYNTVEKFVNGAKEGHHHH 150
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 3e-21
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
A I G+ V L+ KGK + + F + C C++ TP L + YN +G F +
Sbjct: 9 APAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG-FTIYG 67
Query: 77 VSGDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
VS D +E +K + W V + + E + ++G PH++++D GK+++
Sbjct: 68 VSTDRREEDWKKAIEEDKSYWNQVL-LQKDDVKDVLESYCIVGFPHIILVDPEGKIVA 124
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 1e-13
Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
I G +S++D +GK + + F + E P L++ Y K KG
Sbjct: 11 AITGIDLKGNSVSLNDFKGKYVLVDFW-----FAGCSWCRKET-PYLLKTYNAFKDKG-- 62
Query: 233 FEIVLISLDDEEESFKRDLG--SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKT 290
F I +S D EE +K+ + W + + + + + + P ++++ P+GK
Sbjct: 63 FTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKI 122
Query: 291 LHSNV-AEAIEE 301
+ + + +
Sbjct: 123 VAKELRGDDLYN 134
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-21
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
A + + + G L ++ K L+F S CG CQ+ TP L + + + +G +V
Sbjct: 11 APNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG-IQVYA 69
Query: 77 VSGDEDDEAFKGYFSK---MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
+ + DE + + WL V DS+ + + P L +LD+N +++
Sbjct: 70 ANIERKDEEWLKFIRSKKIGGWLNV--RDSKNHTDFKITYDIYATPVLYVLDKNKVIIA 126
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 5e-19
Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 4/115 (3%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
G + D+ K +L+F C C+ PKL D + K + + ++V + +R
Sbjct: 20 TGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDE 77
Query: 406 SFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDM 458
+ +F + + + + P+L + + I K
Sbjct: 78 EWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYE 132
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 1e-13
Identities = 19/127 (14%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 180 DFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
+ + + G + D++ K L+F S + TP+L + + K + KG ++
Sbjct: 13 NLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAA 70
Query: 239 SLDDEEESFKR---DLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295
+++ ++E + + WL + K+ +++ P L ++ + + +
Sbjct: 71 NIERKDEEWLKFIRSKKIGGWLNV-RDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRI 129
Query: 296 -AEAIEE 301
E +++
Sbjct: 130 GYENLDD 136
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 9e-20
Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 5/121 (4%)
Query: 340 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 399
N K + G+ LL F A + RA +L + K + + IS
Sbjct: 15 RIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSIS 72
Query: 400 SDRDQTSFDEFFK--GMPW-LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456
D ++ F E K + G +++ L +K+ + I G I
Sbjct: 73 MDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAANVT 132
Query: 457 D 457
Sbjct: 133 P 133
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 1e-18
Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 4/119 (3%)
Query: 17 SSARDFLIRSNGDQVKLDSLKGKIGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVI 75
A N + + G+ L F A++ + LA N+ +
Sbjct: 11 DLAPRIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK-IAMC 69
Query: 76 FVSGDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
+S DE + F + +L + + + ++++ G +++
Sbjct: 70 SISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIA 128
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-11
Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 20/133 (15%)
Query: 180 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESF 233
+ K S + G+ L F A+ A +L K
Sbjct: 15 RIEFLGNDAKASFHNQLGRYTLLNFW-----AAYDAESRARN-VQLANEVNKFGPDK--I 66
Query: 234 EIVLISLDDEEESF----KRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
+ IS+D++E F K D + K E L + ++L +I +G
Sbjct: 67 AMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESE-LYKKYDLRKGFKNFLINDEGV 125
Query: 290 TLHSNV-AEAIEE 301
+ +NV E + E
Sbjct: 126 IIAANVTPEKLTE 138
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 1e-19
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 19 ARDF-LIRSNGDQVKL--DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
A F L G+++ + + + + L F ASWC P L + E + +F +
Sbjct: 11 APYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAM 70
Query: 75 IFVSGDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
+ +S D D EA++ K + W V + + + + ++ +P ++L GK+L+
Sbjct: 71 LGISLDIDREAWETAIKKDTLSWDQV-CDFTGLSSETAKQYAILTLPTNILLSPTGKILA 129
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 3e-18
Identities = 26/143 (18%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 340 DFVV-GKNGGKVPVS--DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV 396
F + + G K+ S + +LL F A WC P +L K+ K +N++ ++
Sbjct: 13 YFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYK-KNKNFAML 71
Query: 397 FISSDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454
IS D D+ +++ K + W + + ++++ + +P + + P+G+ + ++
Sbjct: 72 GISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARD 131
Query: 455 ARDMIAVHGAEAYPFTEERMKEI 477
+ ++KE+
Sbjct: 132 IQ----------GEALTGKLKEL 144
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 4e-10
Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 23/124 (18%)
Query: 190 ISVSDLEGKTIGLYFSMSSYK---------AS------AEFTPRLVEVYEKLKGKGESFE 234
S+ + +G+ + S ++ AS L + ++ K K ++F
Sbjct: 14 FSLPNEKGEKLSR--SAERFRNRYLLLNFWASWCDPQPEAN-AELKRLNKEYK-KNKNFA 69
Query: 235 IVLISLDDEEES---FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
++ ISLD + E+ + + W + + A+ + + TLPT +++ P GK L
Sbjct: 70 MLGISLDIDREAWETAIKKDT-LSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKIL 128
Query: 292 HSNV 295
++
Sbjct: 129 ARDI 132
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 2e-19
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 22/163 (13%)
Query: 340 DF-VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 398
+F + NG ++ +SDL GK + L F WC PC+ P + + YK K + +E+V +
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAV 65
Query: 399 SSDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456
+ + + F K G+ + + D + + VS +P I P G+ +
Sbjct: 66 NVGESKIAVHNFMKSYGVNFPVVL--D-TDRQVLDAYDVSPLPTTFLINPEGKVVKV--- 119
Query: 457 DMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALHEH 499
V G TE + + N + G ++H H H
Sbjct: 120 ----VTG----TMTESMIHDY---MNLIKPGETSGLEHHHHHH 151
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 1e-18
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
A +F L +NG +++L LKGK + L F +WC PC++ P +A Y QG E++
Sbjct: 6 APNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG-VEIVA 64
Query: 77 VSGDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
V+ E A + + + V +T ++ + + V +P +++ GKV+
Sbjct: 65 VNVGESKIAVHNFMKSYGVNFPVV----LDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-10
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 22/120 (18%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
+FV+ +G++I +SDL+GK + L F + EF P + Y+ K +G
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFW-----GTWCEPCKKEF-PYMANQYKHFKSQG-- 59
Query: 233 FEIVLISLDDEEE---SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
EIV +++ + + +F + G + + + D R+ + +++S LPT +I P+GK
Sbjct: 60 VEIVAVNVGESKIAVHNFMKSYG-VNFPVVL--DTDRQ-VLDAYDVSPLPTTFLINPEGK 115
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 4e-19
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 19 ARDF-LIRSNGDQVKL--DSLKGK-IGLYFSASWCGPC--QRFTPILAEVYNELSRQGDF 72
A F L + G+++ D+ K K + + F ASW ++ L E+Y + +
Sbjct: 11 APFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYI 70
Query: 73 EVIFVSGDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
++ +S D D + +K + + W V ++ + + + IP ++L +GK+
Sbjct: 71 GMLGISLDVDKQQWKDAIKRDTLDWEQV-CDFGGLNSEVAKQYSIYKIPANILLSSDGKI 129
Query: 131 LS 132
L+
Sbjct: 130 LA 131
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 13/137 (9%)
Query: 346 NGGKVPVSD--LAGKTILLYFSAHWCPPC--RAFLPKLIDAYKKIKERNESLEVVFISSD 401
G K+ S K++L+ F A W + +L + YKK K+ N+ + ++ IS D
Sbjct: 20 KGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKK-NKYIGMLGISLD 78
Query: 402 RDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMI 459
D+ + + K + W + + +++++ + IP + + G+ + K R
Sbjct: 79 VDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNLR--- 135
Query: 460 AVHGAEAYPFTEERMKE 476
G E E ++E
Sbjct: 136 ---GEELKKKIENIVEE 149
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 8e-10
Identities = 28/136 (20%), Positives = 60/136 (44%), Gaps = 21/136 (15%)
Query: 180 DF-VISSDGRKISVSD--LEGKTIGLYFSMSSYKAS--------AEFTPRLVEVYEKLKG 228
F + ++ G KI+ S + K++ + F AS L E+Y+K K
Sbjct: 13 FFSLPNAKGEKITRSSDAFKQKSLLINFW-----ASWNDSISQKQSN-SELREIYKKYKK 66
Query: 229 KGESFEIVLISLDDEEESFKR--DLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGP 286
++ ISLD +++ +K ++ W + ++A+ + + +P +++
Sbjct: 67 NKY-IGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSS 125
Query: 287 DGKTLHSNV-AEAIEE 301
DGK L N+ E +++
Sbjct: 126 DGKILAKNLRGEELKK 141
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 1e-18
Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 12/142 (8%)
Query: 340 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 398
DF + G +G +SD GK + L F A WC C A LP + K+ + L VV
Sbjct: 4 DFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSP 63
Query: 399 SSDRDQT--SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456
+Q+ F ++KG+ + LP L + V P I G+
Sbjct: 64 GHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGK------- 116
Query: 457 DMIAVH-GAEAYPFTEERMKEI 477
++ H G + +KE+
Sbjct: 117 -LVKTHPGFMEKDAILQTLKEL 137
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 1e-17
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
DF L+ +G +L KGK + L F ASWC C P E+ E +
Sbjct: 2 VADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDY-VVLTV 60
Query: 77 VSGDEDDE----AFKGYFSKMPWLAVP-FSDSETRDKLDELFKVMGIPHLVILDENGKV 130
VS E FK ++ + + +P D KL E + V P +D+ GK+
Sbjct: 61 VSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPS--GKLLETYGVRSYPTQAFIDKEGKL 117
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-10
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 186 DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESFEIVLIS 239
DG+ +SD +GK + L F AS A P E+ ++ + ++S
Sbjct: 11 DGKTYRLSDYKGKKVYLKFW-----ASWCSICLASL-PDTDEIAKEAGDDY--VVLTVVS 62
Query: 240 LD----DEEESFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGK 289
E FK + + LP D S + L + + + PT I +GK
Sbjct: 63 PGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGK-LLETYGVRSYPTQAFIDKEGK 116
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 2e-18
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 19 ARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFV 77
A DF + VKL G + L F ASWCGPC++ P + ++ + +G F+V+ V
Sbjct: 9 APDFALPGKTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG-FQVVAV 67
Query: 78 SGDEDDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
+ D + ++ + + + + L+ V G+P ++D NGKV
Sbjct: 68 NLDAKTGDAMKFLAQVPAEFTVA----FDPKGQTPRLYGVKGMPTSFLIDRNGKV 118
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 2e-18
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query: 340 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 399
DF + G V +SD G + L F A WC PCR P + K K + +VV ++
Sbjct: 11 DFALPGKTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVN 68
Query: 400 SDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453
D +F + K R + V G+P I +G+ + +
Sbjct: 69 LDAKTGDAMKFLAQVPAEF---TVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQ 121
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 32/158 (20%)
Query: 180 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESF 233
DF + + +SD G + L F AS F P + ++ K K KG F
Sbjct: 11 DFALPGKTGVVKLSDKTGSVVYLDFW-----ASWCGPCRQSF-PWMNQMQAKYKAKG--F 62
Query: 234 EIVLISLDDEEE---SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKT 290
++V ++LD + F + + D + R + + +PT +I +GK
Sbjct: 63 QVVAVNLDAKTGDAMKFLAQVP-AEFTVAF--DPKGQ-TPRLYGVKGMPTSFLIDRNGK- 117
Query: 291 LHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQ 328
+ VG P E +I A ++
Sbjct: 118 --------VLLQHVGFRPADKEAL--EQQILAALGGNE 145
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 3e-18
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
Query: 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDE 84
+G QV L SL+GK + L F+ASWCG C++ P + + + DF +I + DE E
Sbjct: 22 DGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLE 81
Query: 85 AFKGYFSKMPWLAVPF---SDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIRE 141
+ V + D + GI V++D GK+ V++ R
Sbjct: 82 KVLAFAKSTG---VTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKI-----VKLTRL 133
Query: 142 YGVEGYPFTVERIKEM-KEQEERA 164
Y E + V++I EM KE
Sbjct: 134 YNEEEFASLVQQINEMLKEGHHHH 157
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 2e-16
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 9/142 (6%)
Query: 340 DF-VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 398
DF + +G +V +S L GK ++L F+A WC CR +P + + N ++ I
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGI 74
Query: 399 SSDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKV--SGIPMLVAIGPSGRTITKE 454
D F K G+ + D A + K+ + +GI V I G+ I K
Sbjct: 75 DRDEPLEKVLAFAKSTGVTYPLGL--D-PGADIFAKYALRDAGITRNVLIDREGK-IVKL 130
Query: 455 ARDMIAVHGAEAYPFTEERMKE 476
R A E +KE
Sbjct: 131 TRLYNEEEFASLVQQINEMLKE 152
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 33/161 (20%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
DF I+ DG+++++S L GK + L F+ AS E P + +
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFT-----ASWCGVCRKEM-PFIEKDIWLKHKDNAD 68
Query: 233 FEIVLISLDDEEE---SFKRDLGSMPWLALPFKDKSREKLARY-FELSTLPTLVIIGPDG 288
F ++ I D+ E +F + G + + D + A+Y + + V+I +G
Sbjct: 69 FALIGIDRDEPLEKVLAFAKSTG-VTYPLGL--DPGADIFAKYALRDAGITRNVLIDREG 125
Query: 289 KTLHSNVAEAIEEHGVGAFPFTPEKFAELAE-IQRAKEESQ 328
K I + + E+FA L + I +E
Sbjct: 126 K---------IVKLTRL---YNEEEFASLVQQINEMLKEGH 154
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 1e-17
Identities = 21/135 (15%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
F L +G+ + L+++ G + L+F A+WC C +L + + + VI
Sbjct: 17 EASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKY---REISVIA 73
Query: 77 VSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGV 136
+ + +K + +T + + G P +++ ++G ++
Sbjct: 74 IDFWTAEALKALGLNKPGY-----PPPDTPEMFRKFIANYGDPSWIMVMDDGSLV----- 123
Query: 137 EIIREYGVEGYPFTV 151
++ V + V
Sbjct: 124 ---EKFNVRSIDYIV 135
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 3e-15
Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 32/157 (20%)
Query: 340 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 398
F + +G + ++++ G ++L+F A WCP C L +K +E + V+ I
Sbjct: 19 SFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYRE----ISVIAI 74
Query: 399 SSDRDQT------------------SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440
+ F +F + SL KF V I
Sbjct: 75 DFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVM-DDGSLVEKFNVRSIDY 133
Query: 441 LVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 477
+V + S ++ + E +K +
Sbjct: 134 IVIMDKSSN--------VLYAGTTPSLGELESVIKSV 162
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 1e-07
Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 34/146 (23%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
F +++ DG IS++++ G + L+F A+ L + EK +
Sbjct: 19 SFSLTTIDGEVISLNNVGGDVVILWFM-----AAWCPSCVYMA-DLLDRLTEKYRE---- 68
Query: 233 FEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE-----------------KLARYFEL 275
++ I E L + + R+ L F +
Sbjct: 69 ISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGSLVEKFNV 128
Query: 276 STLPTLVIIGPDGKTLHSNVAEAIEE 301
++ +VI+ L++ ++ E
Sbjct: 129 RSIDYIVIMDKSSNVLYAGTTPSLGE 154
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 22/143 (15%), Positives = 53/143 (37%), Gaps = 12/143 (8%)
Query: 340 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 398
+F + +G ++ GK +L+ F A WCP CR +P + K + + L V+ +
Sbjct: 23 NFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAV 80
Query: 399 SSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDM 458
+ ++ ++ F + +++ + +P + G + +
Sbjct: 81 NVEKRFPEKYRRAP----VSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGI 136
Query: 459 IAVHGAEAYPFTEERMKEIDGQY 481
P +K ++G +
Sbjct: 137 -----EWDAPKVVSYLKSLEGHH 154
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 6e-16
Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
A +F L +G+ L +GK + + F ASWC C+ P + + + V+
Sbjct: 21 APNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD-LVVLA 79
Query: 77 VSGDEDDEAF-KGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
V+ ++ + +L SD+ ++ + + +P I+D G +
Sbjct: 80 VNVEKRFPEKYRRAPVSFNFL----SDATG--QVQQRYGANRLPDTFIVDRKGII 128
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-10
Identities = 19/146 (13%), Positives = 46/146 (31%), Gaps = 30/146 (20%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
+F + + G S++ GK + + F AS E P + + +
Sbjct: 23 NFKLPTLSGENKSLAQYRGKIVLVNFW-----ASWCPYCRDEM-PSMDRLVKSFPKGD-- 74
Query: 233 FEIVLISLDDEEESFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
++ ++++ R ++ D + + + + + + LP I+ G
Sbjct: 75 LVVLAVNVEKRFPEKYRRAP----VSFNFLSDATGQ-VQQRYGANRLPDTFIVDRKGI-- 127
Query: 292 HSNVAEAIEEHGVGAFPFTPEKFAEL 317
I + G + K
Sbjct: 128 -------IRQRVTGGIEWDAPKVVSY 146
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 2e-17
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 18 SARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVI 75
+ F +G +SL GK L+F A WC CQ P++ +V + +
Sbjct: 4 AQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAAS---HPEVTFV 60
Query: 76 FVSGDEDDEAFKGYFSKMPWLAVP-FSDSETRDKLDELFKVMGIPHLVILDENGKV 130
V+G + A + + +K P +D T + F V P +D +G V
Sbjct: 61 GVAGLDQVPAMQEFVNKYPVKTFTQLAD--TDGSVWANFGVTQQPAYAFVDPHGNV 114
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 8e-15
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 4/104 (3%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
+G L GK +L+F A WCP C+ P + E + V ++
Sbjct: 14 DGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVP 69
Query: 406 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 449
+ EF P S+ F V+ P + P G
Sbjct: 70 AMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGN 113
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 6e-06
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 17/117 (14%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
F + DG L GK L+F A E P + +V
Sbjct: 7 QFSAKTLDGHDFHGESLLGKPAVLWFW-----APWCPTCQGEA-PVVGQVAASHPEV--- 57
Query: 233 FEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
V ++ D+ + + + P + + F ++ P + P G
Sbjct: 58 -TFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGN 113
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 4e-17
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 20/163 (12%)
Query: 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG 70
SL S +A F L +G V L+GK + F C C P + + N+ +
Sbjct: 2 SLDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN 61
Query: 71 DFEVIFVSGDEDD-EAFKGYFSKMPWLAVPF---SDSETRDKLDELFKVMGIPHLVILDE 126
F+V+ V+ D E+ + Y +PF D++ + + F P V++ +
Sbjct: 62 -FQVLAVAQPIDPIESVRQYVKDYG---LPFTVMYDAD--KAVGQAFGTQVYPTSVLIGK 115
Query: 127 NGKVLSDGGVEIIREYGVEGYPFTVERIKE-MKEQEERAKREQ 168
G++ + G + + I + +
Sbjct: 116 KGEI-------LKTYVGEPDFGKLYQEIDTAWRNSDAEGHHHH 151
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-16
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 16/142 (11%)
Query: 340 DF-VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 398
F + +G V +DL GK L+ F CP C + +PK+I K +N +V+ +
Sbjct: 10 AFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAV 67
Query: 399 SSDRDQTS-FDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 455
+ D ++ K G+P+ ++ + F P V IG G +
Sbjct: 68 AQPIDPIESVRQYVKDYGLPF---TVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKT-- 122
Query: 456 RDMIAVHGAEAYPFTEERMKEI 477
G + + +
Sbjct: 123 -----YVGEPDFGKLYQEIDTA 139
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 23/127 (18%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
F + G+ +S +DL+GK + F +E P++++ K K
Sbjct: 10 AFSLPDLHGKTVSNADLQGKVTLINFW-----FPSCPGCVSEM-PKIIKTANDYKNKN-- 61
Query: 233 FEIVLISLDDEEES----FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDG 288
F+++ ++ + + +D G +P+ + DK + + F PT V+IG G
Sbjct: 62 FQVLAVAQPIDPIESVRQYVKDYG-LPFTVMYDADK---AVGQAFGTQVYPTSVLIGKKG 117
Query: 289 KTLHSNV 295
+ L + V
Sbjct: 118 EILKTYV 124
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 5e-17
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 12/108 (11%)
Query: 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
+G SL+GK L+F WC C P L++V + ++ D A
Sbjct: 13 SGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGA 69
Query: 86 FKGYFSKMPWLAVPF---SDSETRDKLDELFKVMGIPHLVILDENGKV 130
+ + SK + F +D + + V P V +G
Sbjct: 70 MQSFVSKYN---LNFTNLND--ADGVIWARYNVPWQPAFVFYRADGTS 112
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-16
Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 14/132 (10%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
+G + L GK +L+F WCP C A P L N ++ V I++ D
Sbjct: 13 SGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAA----NPAVTFVGIATRADVG 68
Query: 406 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAE 465
+ F L + + ++ V P V G
Sbjct: 69 AMQSFVSKYN-LNFTNLNDADGVIWARYNVPWQPAFVFYRADGT---------STFVNNP 118
Query: 466 AYPFTEERMKEI 477
+++ +
Sbjct: 119 TAAMSQDELSGR 130
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-07
Identities = 21/113 (18%), Positives = 32/113 (28%), Gaps = 23/113 (20%)
Query: 186 DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESFEIVLIS 239
G + L+GK L+F AE P L +V V I+
Sbjct: 13 SGAPFDGASLQGKPAVLWFW-----TPWCPFCNAEA-PSLSQVAAANPA----VTFVGIA 62
Query: 240 LDDEEE---SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
+ SF + + L D + + + P V DG
Sbjct: 63 TRADVGAMQSFVSKYN-LNFTNLN--DADGV-IWARYNVPWQPAFVFYRADGT 111
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 7e-17
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
+G + L GK ++ F A WCPPCR+ +P ++ K R V I+ +
Sbjct: 23 DGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVNEQLP 80
Query: 406 SFDEFFK--GMPWLAL--PFGDARKASLSRKFKVSGIPMLVAIGPSGR 449
+ + K G+ + + R + ++GIP I SG
Sbjct: 81 NVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGN 128
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 5e-16
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 27 NGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
+G SLKGK + F A+WC PC+ P + +V + +G F + ++ +E
Sbjct: 23 DGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG-FTFVGIAVNEQLPN 81
Query: 86 FKGYFSK--MPWLAVPFSDSETRD-KLDELFKVMGIPHLVILDENGKV 130
K Y + + + + R + GIP ++D +G V
Sbjct: 82 VKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNV 129
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 3e-10
Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 18/126 (14%)
Query: 186 DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESFEIVLIS 239
DG+ S + L+GK + F A+ +E P +V+V + +G F V I+
Sbjct: 23 DGKPFSSASLKGKAYIVNFF-----ATWCPPCRSEI-PDMVQVQKTWASRG--FTFVGIA 74
Query: 240 LDDEEE---SFKRDLG-SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295
++++ ++ + G P + + ++ +PT +I G V
Sbjct: 75 VNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIV 134
Query: 296 AEAIEE 301
+
Sbjct: 135 GPRSKA 140
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-16
Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 15/147 (10%)
Query: 340 DFV-VGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 398
DF NG V +SDL G+ +++ F A WCPPCR +P ++ + + ++ +
Sbjct: 10 DFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCV 67
Query: 399 SSDRDQTSF-DEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI------ 451
S D +EFF+ LP + + + +G+P I G +
Sbjct: 68 SIDEGGKVAVEEFFRKTG-FTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGA 126
Query: 452 ----TKEARDMIAVHGAEAYPFTEERM 474
E + ++A
Sbjct: 127 MEWDHPEVIAFLNNELSKAREGHHHHH 153
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 1e-15
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 21 DF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
DF L NG+ VKL LKG+ + + F A+WC PC+ P + + ++ + F ++ VS
Sbjct: 10 DFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP-FRMLCVS 68
Query: 79 GDEDD-EAFKGYFSKMPWLAVPF---SDSETRDKLDELFKVMGIPHLVILDENGKVL 131
DE A + +F K D++ ++ +L+ G+P ++D +G +L
Sbjct: 69 IDEGGKVAVEEFFRKTG---FTLPVLLDADK--RVGKLYGTTGVPETFVIDRHGVIL 120
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-09
Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 36/164 (21%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
DF +++ +G + +SDL+G+ + + F A+ E P ++ + + GK
Sbjct: 10 DFTLNTLNGEVVKLSDLKGQVVIVNFW-----ATWCPPCREEI-PSMMRLNAAMAGKP-- 61
Query: 233 FEIVLISLDDEEE----SFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPD 287
F ++ +S+D+ + F R G LP D + + + + + +P +I
Sbjct: 62 FRMLCVSIDEGGKVAVEEFFRKTG----FTLPVLLDADKR-VGKLYGTTGVPETFVIDRH 116
Query: 288 GKTLHSNVAEAIEEHGVGAFPFTPEKFAEL--AEIQRAKEESQT 329
G I + VGA + + E+ +A+E
Sbjct: 117 GV---------ILKKVVGAMEWDHPEVIAFLNNELSKAREGHHH 151
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 3e-16
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 340 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 399
+ K+ + L ++ A WC PCR +P + YK K+ + +++V I+
Sbjct: 7 ELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIA 64
Query: 400 SDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKF--KVSGIPMLVAIGPSGR 449
D F K + + + A + + + V +P V P
Sbjct: 65 LDTSDN-IGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCG 117
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 4e-15
Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 15 LSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFE 73
+S SA + + L SLK + A+WCGPC++ P +++ Y + +
Sbjct: 1 MSLSADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS-VD 59
Query: 74 VIFVSGDEDDEAFKGYFSKMP--WLAVPFSDSETRDKLDEL-FKVMGIPHLVILDENGKV 130
++ ++ D D + + P + ++ + +R+ + V +P V+
Sbjct: 60 MVGIALDTSDNI-GNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGY 118
Query: 131 L 131
Sbjct: 119 R 119
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-11
Identities = 21/158 (13%), Positives = 45/158 (28%), Gaps = 30/158 (18%)
Query: 180 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESF 233
+ D S+ L+ + A+ E P + + Y+ K
Sbjct: 7 ELAGWKDNTPQSLQSLKAPVRIVNLW-----ATWCGPCRKEM-PAMSKWYKAQKKGS--V 58
Query: 234 EIVLISLDDEE--ESFKRDLG-SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKT 290
++V I+LD + +F + S P + + LP V+ P
Sbjct: 59 DMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCG- 117
Query: 291 LHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQ 328
+ G + + ++ A + +
Sbjct: 118 --------YRQTITG--EVNEKSLTDA--VKLAHSKCR 143
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 1e-15
Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-DQ 404
+G +SD GKT+L+ A WC PCR +P L + K+ N EVV I+ D D
Sbjct: 49 DGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDP 106
Query: 405 TSFDEFFK--GMPWLALPFGDARKAS--LSRKFKVSGIPMLVAIGPSGRTITK 453
F K + L K L + G+P V + P G I
Sbjct: 107 EKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 159
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 1e-15
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
D ++G KL +GK L A+WC PC++ P L E+ +LS FEV+
Sbjct: 40 LPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN-FEVVA 98
Query: 77 VSGDEDD-EAFKGYFSK--MPWLAVPF-SDSETRDKLDELFKVMGIPHLVILDENGKV 130
++ D D E K + + + L ++ L + + +G+P V++D G
Sbjct: 99 INIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCE 156
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 6e-09
Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 30/144 (20%)
Query: 186 DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESFEIVLIS 239
DG+ +SD GKT+ + A+ E P L E+ KL G FE+V I+
Sbjct: 49 DGKPKKLSDFRGKTLLVNLW-----ATWCVPCRKEM-PALDELQGKLSGPN--FEVVAIN 100
Query: 240 LDDEE----ESFKRDLGSMPWLALPF--KDKSREKLARYFELSTLPTLVIIGPDGKTLHS 293
+D + ++F ++ + L K K + L +PT V++ P G
Sbjct: 101 IDTRDPEKPKTFLKEAN-LTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGC---- 155
Query: 294 NVAEAIEEHGVGAFPFTPEKFAEL 317
G + E +L
Sbjct: 156 -----EIATIAGPAEWASEDALKL 174
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 1e-14
Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 14/140 (10%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD---- 401
+ V K L+ F A WCP C + L + + K + ++ ++S
Sbjct: 27 DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLH 84
Query: 402 -RDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIA 460
+ F +++ G+ + LP ++++ +S P IG G
Sbjct: 85 EKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRI------- 137
Query: 461 VHGAEAYPFTEERMKEIDGQ 480
V G+ ++ +
Sbjct: 138 VKGSINEAQALALIRNPNAD 157
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 3e-13
Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 18/155 (11%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
+ ++ + K K + F ASWC C + + +I
Sbjct: 18 HTMSTMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS-ANLIT 76
Query: 77 V-----SGDEDDEAFKGYFSKMPWLAVP-FSDSETRDKLDELFKVMGIPHLVILDENGKV 130
V ++ D F+ +++ + + +P +D+ + + + P ++ ++G V
Sbjct: 77 VASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGG--TIAQNLNISVYPSWALIGKDGDV 134
Query: 131 LSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAK 165
G + I+ K
Sbjct: 135 QR-------IVKGSINEAQALALIRNPNADLGSLK 162
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 29/120 (24%)
Query: 186 DGRKISVSDLEGKTIGLYF----------SMSSYKASAEFTPRLVEVYEKLKGKGESFEI 235
D R SV + K + F + + + + K +
Sbjct: 27 DNRPASVYLKKDKPTLIKFWASWCPLCLSEL----------GQAEKWAQDAKFSS--ANL 74
Query: 236 VLISLD-----DEEESFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGK 289
+ ++ ++ F++ + + LP D +A+ +S P+ +IG DG
Sbjct: 75 ITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGT-IAQNLNISVYPSWALIGKDGD 133
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 2e-14
Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 19/139 (13%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS----- 400
+ + L GK +L+ F A+ C C+ +P ++ Y+ K+ L V+ + +
Sbjct: 71 GNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAVIGVHTPEYAF 128
Query: 401 DRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDM 458
++ + + G+ + P + ++ P I +G
Sbjct: 129 EKVPGNVAKGAANLGISY---PIALDNNYATWTNYRNRYWPAEYLIDATGTVRHI----- 180
Query: 459 IAVHGAEAYPFTEERMKEI 477
G Y TE ++++
Sbjct: 181 --KFGEGDYNVTETLVRQL 197
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 3e-13
Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 13/113 (11%)
Query: 27 NGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE---- 81
+ L SL+GK+ L F A C CQR P + Y G VI V E
Sbjct: 71 GNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG-LAVIGVHTPEYAFE 129
Query: 82 -DDEAFKGYFSK--MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ + + D+ ++ P ++D G V
Sbjct: 130 KVPGNVAKGAANLGISYPIA--LDNN--YATWTNYRNRYWPAEYLIDATGTVR 178
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 2e-07
Identities = 18/153 (11%), Positives = 41/153 (26%), Gaps = 46/153 (30%)
Query: 184 SSDGRKISVSDLEGKTIGLYF----------SMSSYKASAEFTPRLVEVYEKLKGKGESF 233
+ + I + L GK + + F ++ P +V Y+ K G
Sbjct: 69 TPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAI----------PHVVGWYQAYKDSG--L 116
Query: 234 EIVLISLDDEE--------ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIG 285
++ + + +LG + + P + + P +I
Sbjct: 117 AVIGVHTPEYAFEKVPGNVAKGAANLG-ISY---PIALDNNYATWTNYRNRYWPAEYLID 172
Query: 286 PDGK------------TLHSNVAEAIEEHGVGA 306
G + V + + + G
Sbjct: 173 ATGTVRHIKFGEGDYNVTETLVRQLLNDAKPGV 205
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-14
Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 18/138 (13%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS----- 400
NG + K L++F + C C+ +P++ + K +++ L VV +
Sbjct: 18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSED 74
Query: 401 DRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIA 460
D D E + P +L+ F+ +P +G+ +
Sbjct: 75 DLDPGKIKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQ--------LRH 125
Query: 461 VH-GAEAYPFTEERMKEI 477
G E+R+ +
Sbjct: 126 FQAGGSGMKMLEKRVNRV 143
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 5e-14
Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 23/145 (15%)
Query: 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD-- 83
NG+ + + K ++F + C C+ P + E ++ Q V+ V +
Sbjct: 18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKY--QDQLNVVAVHMPRSEDD 75
Query: 84 ---EAFKGYFSKMPWLAVPF---SDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVE 137
K ++ + DS+ L + F+ +P + D+ G++
Sbjct: 76 LDPGKIKETAAEHD---ITQPIFVDSD--HALTDAFENEYVPAYYVFDKTGQLRH----- 125
Query: 138 IIREYGVEGYPFTVERIKEMKEQEE 162
+ G G +R+ + + E
Sbjct: 126 --FQAGGSGMKMLEKRVNRVLAETE 148
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 5e-05
Identities = 18/150 (12%), Positives = 38/150 (25%), Gaps = 53/150 (35%)
Query: 186 DGRKISVSDLEGKTIGLYF----------SMSSYKASAEFTPRLVEVYEKLKGKGESFEI 235
+G + K ++F +M P++ E +K + + +
Sbjct: 18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAM----------PQVNEFRDKYQDQ---LNV 64
Query: 236 VLISLDDEE--------ESFKRDLGSMPWLALPFK---DKSREKLARYFELSTLPTLVII 284
V + + E + + + D L FE +P +
Sbjct: 65 VAVHMPRSEDDLDPGKIKETAAEHD------ITQPIFVDSDHA-LTDAFENEYVPAYYVF 117
Query: 285 GPDGK------------TLHSNVAEAIEEH 302
G+ L V + E
Sbjct: 118 DKTGQLRHFQAGGSGMKMLEKRVNRVLAET 147
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 3e-14
Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 22/127 (17%)
Query: 27 NGDQVKLDSLKGKIG-LYFSASWCGPCQRFT-PILAEVYNELSRQGDFEVIFVSGDEDDE 84
N + + + L+GK+ + C C P +++ + +VI + +
Sbjct: 19 NHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ-VQVIGLHSVFEHH 77
Query: 85 AFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGV 144
D T + L GI V +D + +++Y +
Sbjct: 78 -----------------DVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPST--MKKYRL 118
Query: 145 EGYPFTV 151
EG P +
Sbjct: 119 EGTPSII 125
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 1e-12
Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRA-FLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
N + DL GK +++ CP C +P+ ++ I E ++V+ + S +
Sbjct: 19 NHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEH 76
Query: 405 TSFD------EFFK--GMPW---LALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 449
F G+ + + +P R S +K+++ G P ++ GR
Sbjct: 77 HDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGR 132
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 16/143 (11%), Positives = 46/143 (32%), Gaps = 28/143 (19%)
Query: 186 DGRKISVSDLEGKTIGLYF-SMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 244
+ +S DL GK + + M P+ +++ + +++ + E
Sbjct: 19 NHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEH 76
Query: 245 ---------ESFKRDLGSMPW---LALPFKDKSREKLARYFELSTLPTLVIIGPDGK--- 289
+ F + G + + + +P + + + + L P++++ G+
Sbjct: 77 HDVMTPEALKVFIDEFG-IKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQ 135
Query: 290 ---------TLHSNVAEAIEEHG 303
L + + E
Sbjct: 136 VQFGQVDDFVLGLLLGSLLSETD 158
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 4e-14
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 21 DF-LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79
DF L+ G V ++ + F ASWC C+ P L V E F VI
Sbjct: 13 DFLLLDPKGQPVTPATVSKPAVIVFWASWCTVCKAEFPGLHRVAEE--TGVPFYVISREP 70
Query: 80 DEDDEAFKGYFSKM----PWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ E Y P LA D + FKV+G P ++D GKV+
Sbjct: 71 RDTREVVLEYMKTYPRFIPLLASDR-DRPHE--VAARFKVLGQPWTFVVDREGKVV 123
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-11
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 6/115 (5%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
G V + ++ +++ F A WC C+A P L ++ V+ +
Sbjct: 20 KGQPVTPATVSKPAVIV-FWASWCTVCKAEFPGLHRVAEETGVP---FYVISREPRDTRE 75
Query: 406 SFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDM 458
E+ K L R ++ +FKV G P + G+ + A
Sbjct: 76 VVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRA 130
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 36/160 (22%)
Query: 180 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 232
DF++ G+ ++ + + + +++ AS AEF P L V E+ G
Sbjct: 13 DFLLLDPKGQPVTPATVSKPAVIVFW------ASWCTVCKAEF-PGLHRVAEE---TGVP 62
Query: 233 FEIVLISLDDEEE---SFKRDLG-SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDG 288
F ++ D E + + +P LA +A F++ P ++ +G
Sbjct: 63 FYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHE--VAARFKVLGQPWTFVVDREG 120
Query: 289 KTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQ 328
K + G E + + A + +
Sbjct: 121 K---------VVALFAG--RAGREALLD--ALLLAGADLE 147
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 1e-13
Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
Query: 343 VGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNES----LEVVFI 398
+ + G ++ +SD + ++L WC PCR+ L +++++ V+ I
Sbjct: 45 LMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGI 104
Query: 399 S-SDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 449
+ D + +F G+ + ++ A+ S IP + + R
Sbjct: 105 NVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHR 158
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 8e-13
Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 33/135 (24%)
Query: 23 LIRSNGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQG-----DFEVIF 76
+ G Q+ L + ++ + WC PC+ + L ++ EL G V+
Sbjct: 44 SLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLG 103
Query: 77 VSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGV 136
++ + RD + G+ + I D + G
Sbjct: 104 INVRDYS----------------------RDIAQDFVTDNGLDYPSIYDPPFMTAASLGG 141
Query: 137 EIIREYGVEGYPFTV 151
P T+
Sbjct: 142 -----VPASVIPTTI 151
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 8e-08
Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 183 ISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES---- 232
+ +G +I++SD E + + L +E L ++E+L+ G
Sbjct: 45 LMEEGTQINLSDFENQVVILNAW-----GQWCAPCRSES-DDLQIIHEELQAAGNGDTPG 98
Query: 233 FEIVLISLDDEEES----FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDG 288
++ I++ D F D G + + ++ S +PT +++
Sbjct: 99 GTVLGINVRDYSRDIAQDFVTDNG-LDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQH 157
Query: 289 K 289
+
Sbjct: 158 R 158
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 2e-13
Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
F + G+ + + KG+ L+F SWC PC++ P Y+ +++
Sbjct: 15 PAVFLMKTIEGEDISI-PNKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS-VKLVT 72
Query: 77 VS---GDEDDEAFKGYFSKMPWLAVPF---SDSETRDKLDELFKVMGIPHLVILDENGKV 130
V+ +++ + + + + F DS+ +L + + ++ IP +L+E G++
Sbjct: 73 VNLVNSEQNQQVVEDFIKANK---LTFPIVLDSK--GELMKEYHIITIPTSFLLNEKGEI 127
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 4e-13
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS---SDR 402
G + + + G+ +L+F WCPPC+ LP+ Y + +++V ++ S++
Sbjct: 24 EGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS--VKLVTVNLVNSEQ 80
Query: 403 DQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 449
+Q ++F K L P K L +++ + IP + G
Sbjct: 81 NQQVVEDFIKANK-LTFPIVLDSKGELMKEYHIITIPTSFLLNEKGE 126
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 42/149 (28%)
Query: 186 DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESFEIVLIS 239
+G IS+ + +G+ L+F S E P+ Y+ ++V ++
Sbjct: 24 EGEDISIPN-KGQKTILHFW-----TSWCPPCKKEL-PQFQSFYDAHPSDS--VKLVTVN 74
Query: 240 LDDEEES------FKRDLGSMPWLALPFK---DKSREKLARYFELSTLPTLVIIGPDGKT 290
L + E++ F + L F D E L + + + T+PT ++ G+
Sbjct: 75 LVNSEQNQQVVEDFIKANK------LTFPIVLDSKGE-LMKEYHIITIPTSFLLNEKGE- 126
Query: 291 LHSNVAEAIEEHGVGAFPFTPEKFAELAE 319
IE+ +G P T E+ E E
Sbjct: 127 --------IEKTKIG--PMTAEQLKEWTE 145
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 2e-13
Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 23/126 (18%)
Query: 28 GDQVKLDSLKGK-IGLYFSASWCGPC-QRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
+ L L+GK I + C C P+ +V V+ + +
Sbjct: 18 ATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK-VAVLGLHTVFEHH- 75
Query: 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVE 145
++ T L I V +D+ G + Y +
Sbjct: 76 ----------------EAMTPISLKAFLHEYRIKFPVGVDQPGDG---AMPRTMAAYQMR 116
Query: 146 GYPFTV 151
G P +
Sbjct: 117 GTPSLL 122
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 4e-13
Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 13/114 (11%)
Query: 347 GGKVPVSDLAGKTILLYFSAHWCPPCRA-FLPKLIDAYKKIKERNESLEVVFISSD---- 401
+ ++DL GK I++ CP C +P E + V+ + +
Sbjct: 18 ATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTVFEHH 75
Query: 402 --RDQTSFDEFFKGM----PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 449
S F P GD +++ G P L+ I +G
Sbjct: 76 EAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGD 129
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-08
Identities = 20/150 (13%), Positives = 44/150 (29%), Gaps = 28/150 (18%)
Query: 180 DFVISS---DGRKISVSDLEGKTIGLYF-SMSSYKASAEFTPRLVEVYEKLKGKGESFEI 235
+ I ++++DL GK I + M P +V +
Sbjct: 8 ELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAV 65
Query: 236 VLISLDDEE---------ESFKRDLG-SMPWLALPFKDKSREKLARYFELSTLPTLVIIG 285
+ + E ++F + P D + + +++ P+L++I
Sbjct: 66 LGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLID 125
Query: 286 PDGK------------TLHSNVAEAIEEHG 303
G L + +A + E
Sbjct: 126 KAGDLRAHHFGDVSELLLGAEIATLLGEAA 155
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 7e-11
Identities = 71/537 (13%), Positives = 141/537 (26%), Gaps = 165/537 (30%)
Query: 3 MNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASW--CGPCQRFTPILA 60
+ G+ + + ++ + F W C +L
Sbjct: 158 VLGSGK---TWVALDVCLSYKVQCK--------------MDFKIFWLNLKNCNSPETVL- 199
Query: 61 EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120
E+ +L Q D + S + + + +L L K +
Sbjct: 200 EMLQKLLYQIDPN--WTSRSDHSSN------------IKLRIHSIQAELRRLLKSKPYEN 245
Query: 121 -LVILDE--NGKVLS--DGGVEII---REYGV----EGYPFTVERIKEMKEQEERAKREQ 168
L++L N K + + +I+ R V T + + +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 169 SLRSVLTSHSRDFVISSDGRKISVSDL--EGKTIG-LYFSM-----SSYKASAEFTPRLV 220
L L DL E T S+ A+ + +
Sbjct: 306 LLLKYL--------------DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 221 EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280
+KL I+ SL+ E + R + + LS P
Sbjct: 352 --CDKLT------TIIESSLNVLEPAEYRKM--------------------FDRLSVFPP 383
Query: 281 LVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAE------LAEIQRAKEESQTLESVL 334
I P L + I+ L E ++ KE + ++ S+
Sbjct: 384 SAHI-PT-ILLSLIWFDVIKS--------DVMVVVNKLHKYSLVE-KQPKESTISIPSIY 432
Query: 335 VSGDLDFVVGKNGGKVPVSDLAG--KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNES 392
L+ KV + + ++I+ +++ +P +D Y
Sbjct: 433 ----LEL-------KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYS---- 475
Query: 393 LEVVFIS---SDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 449
I + + F+ M +L F L +K + A G
Sbjct: 476 ----HIGHHLKNIEHPERMTLFR-MVFLDFRF-------LEQKIRHDSTA-WNASGSILN 522
Query: 450 TITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALHEHELVLDRC 506
T+ + + Y + + + D +Y + + L + E L
Sbjct: 523 TLQ----QL------KFY---KPYICDNDPKYERLVN----AILDFLPKIEENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 4e-09
Identities = 78/490 (15%), Positives = 154/490 (31%), Gaps = 130/490 (26%)
Query: 71 DFEVIFVSGDEDDEAFKGYFSKMPWLAVPF-SDSETRDKLDELFKVMG---IPHLVIL-- 124
DFE G+ Y + F + + +D D ++ I H+++
Sbjct: 8 DFET----GEHQ----YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 125 DENGK-----VLSDGGVEIIREYGVEG-----YPFTVERIK-EMKEQEERAKREQSLRSV 173
+G L E+++++ VE Y F + IK E ++ + R
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 174 LTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTP-RLVEVYEKLKGKGES 232
L + ++ F K +VS L+ Y + +A E P + V + + G G++
Sbjct: 119 LYNDNQVF------AKYNVSRLQ-----PYLKLR--QALLELRPAKNVLID-GVLGSGKT 164
Query: 233 FEIVLIS--LDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKT 290
+ + K D + WL L + L L L L I P+ +
Sbjct: 165 ---WVALDVCLSYKVQCKMDFK-IFWLNLKNCNSPETVLEM---LQKL--LYQIDPNWTS 215
Query: 291 LHSNVAEAIEEHGVGAFPFTPEKFAEL-AEIQRAKEESQTLESVLVSGDLDFVVGKNGGK 349
+ + + + AE++R + +LV L
Sbjct: 216 RSDHSSN------------IKLRIHSIQAELRRLLKSKPYENCLLV---LL--------- 251
Query: 350 VPVSDLAGKTILLYFSAHWCPPCRAFL----PKLIDAYKKIKERNESLEVVFISSDRDQT 405
++ F+ C+ L ++ D + SL+ ++ D+
Sbjct: 252 ----NVQNAKAWNAFNLS----CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 406 SFDEFF-KGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGA 464
K +L D L R+ ++ P ++I I + RD +A
Sbjct: 304 --KSLLLK---YLDCRPQD-----LPRE-VLTTNPRRLSI------IAESIRDGLATWDN 346
Query: 465 EAYPFTEERMKEIDGQYN-----EMAKGW------PENVK---HAL---------HEHEL 501
+ ++ I+ N E K + P + L + +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 502 VLDRCGVYSC 511
V+++ YS
Sbjct: 407 VVNKLHKYSL 416
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 8e-11
Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 35/131 (26%)
Query: 1 MNMNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILA 60
M++ G + QS+ + + G + F C C L+
Sbjct: 1 MSLEGIKQINFQSI--NVVENLEEAKEGIPTIIM---------FKTDTCPYCVEMQKELS 49
Query: 61 EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120
V E +G F + + +E+ L + +P
Sbjct: 50 YVSKER--EGKFNIYYARLEEEKNI----------------------DLAYKYDANIVPT 85
Query: 121 LVILDENGKVL 131
V LD+ G
Sbjct: 86 TVFLDKEGNKF 96
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 12/97 (12%), Positives = 28/97 (28%), Gaps = 24/97 (24%)
Query: 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 416
G ++ F CP C +L K+ + + + + + ++
Sbjct: 26 GIPTIIMFKTDTCPYCVEMQKELSYVSKEREGK---FNIYYARLEEEK-----------N 71
Query: 417 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453
+ L K+ + +P V + G
Sbjct: 72 IDLA----------YKYDANIVPTTVFLDKEGNKFYV 98
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A Length = 167 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 2e-08
Identities = 24/135 (17%), Positives = 41/135 (30%), Gaps = 36/135 (26%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
L WC CQ L Q + E+ +S ++ + +
Sbjct: 59 LVAGEMWCPDCQINLAALDFAQRL---QPNIELAIISKGRAEDDLRQRLA---------- 105
Query: 102 DSETRDKLDELFKVMGIPHLVILDENGKVLS----------DGGVEIIREYGVEGYPFTV 151
+ + IP +++LDE +L DGG + + Y Y
Sbjct: 106 -----------LERIAIPLVLVLDEEFNLLGRFVERPQAVLDGGPQALAAYKAGDY--LE 152
Query: 152 ERIKEMKEQEERAKR 166
I ++ E A R
Sbjct: 153 HAIGDVLAIIEGAAR 167
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A Length = 167 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 2e-06
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 352 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411
+ + + LL WCP C+ L L + ++E+ IS R + +
Sbjct: 49 LQRIERRYRLLVAGEMWCPDCQINLAAL----DFAQRLQPNIELAIISKGRAEDDLRQRL 104
Query: 412 K 412
Sbjct: 105 A 105
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 3e-08
Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 27/135 (20%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
+ SWCG C+ P AE +F ++ + +E+ +
Sbjct: 51 VIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPK----------------- 93
Query: 102 DSETRDKLDELFKVMG--IPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKE 159
DE F G IP ++ LD +GKV + E Y + ++ MKE
Sbjct: 94 --------DEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKE 145
Query: 160 QEERAKREQSLRSVL 174
+ER + + L
Sbjct: 146 AQERLTGDAFRKKHL 160
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 5e-04
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 23/97 (23%)
Query: 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 416
G +++ WC C+A PK +I E + V ++ + ++ DE F
Sbjct: 46 GLPLMVIIHKSWCGACKALKPK-FAESTEISELSH--NFVMVNLEDEEEPKDEDFSP--- 99
Query: 417 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453
IP ++ + PSG+ +
Sbjct: 100 -----------------DGGYIPRILFLDPSGKVHPE 119
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-08
Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 35/118 (29%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
L+ CG C + V + E I + + E +A ++
Sbjct: 23 LFIKTENCGVCDVMLRKVNYVLENYN---YVEKIEILLQDMQE-----------IAGRYA 68
Query: 102 DSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKE 159
V P +++ NGK EI+RE I+ +E
Sbjct: 69 -------------VFTGPTVLLF-YNGK-------EILRESRFISLENLERTIQLFEE 105
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-05
Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 27/85 (31%)
Query: 358 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 417
+ +LL+ C C L K+ + E +E + I Q
Sbjct: 19 QLVLLFIKTENCGVCDVMLRKV----NYVLENYNYVEKIEILLQDMQ------------- 61
Query: 418 ALPFGDARKASLSRKFKVSGIPMLV 442
++ ++ V P ++
Sbjct: 62 ----------EIAGRYAVFTGPTVL 76
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 5e-08
Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 26/96 (27%)
Query: 42 LYFSASWCGPCQRFTPI---LAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAV 98
L A WC C+ F +V L+ + + + +
Sbjct: 36 LDLYADWCVACKEFEKYTFSDPQVQKALA-----DTVLLQANVTAN-------------- 76
Query: 99 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134
D++ L V+G+P ++ D G+
Sbjct: 77 ---DAQDVALLKH-LNVLGLPTILFFDGQGQEHPQA 108
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 20/97 (20%)
Query: 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 416
GK ++L A WC C+ F + + + + V + ++
Sbjct: 31 GKPVMLDLYADWCVACKEFEKYT---FSDPQVQKALADTVLLQANVTAN----------- 76
Query: 417 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453
DA+ +L + V G+P ++ G+ +
Sbjct: 77 ------DAQDVALLKHLNVLGLPTILFFDGQGQEHPQ 107
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 8e-08
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 24/93 (25%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
L F A+WC C+ L + + + +
Sbjct: 34 LVFGANWCTDCRALDKSL---------------------RNQKNTALIAKHFEVVKIDVG 72
Query: 102 DSETRDKLDELFKVM---GIPHLVILDENGKVL 131
+ + +L + + GIP +V+++ +GKV
Sbjct: 73 NFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVR 105
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 5e-05
Identities = 26/99 (26%), Positives = 34/99 (34%), Gaps = 18/99 (18%)
Query: 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415
K LL F A+WC CRA L K + K + EVV I D +FD +
Sbjct: 28 THKPTLLVFGANWCTDCRA-LDKSLRNQKNTALIAKHFEVVKI----DVGNFDRNLELSQ 82
Query: 416 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454
P GIP +V + G+
Sbjct: 83 AYGDP-------------IQDGIPAVVVVNSDGKVRYTT 108
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 5e-07
Identities = 37/347 (10%), Positives = 80/347 (23%), Gaps = 102/347 (29%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F A W P + P + S ++ + D
Sbjct: 462 FFAPWSPPSRALLPE----LRKASTLLYGQLKVGTLDCTIH------------------- 498
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKE-MKEQEE 162
+ L ++ + P V+ +++ +G + E+I E +++
Sbjct: 499 ---EGLCNMYNIQAYPTTVVFNQSSIHEYEG-------------HHSAEQILEFIEDLRN 542
Query: 163 RAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEV 222
+ LT + + ++ + + F S P +
Sbjct: 543 PSVVS------LTPSTFNELVKQRKHD--------EVWMVDFYSPWSHPSQVLMPEWKRM 588
Query: 223 YEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 282
L G I + S+D + + P +
Sbjct: 589 ARTLTGL-----INVGSVDCGQY---------------------HSFCTQENVQRYPEIR 622
Query: 283 IIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFV 342
+A + H + L +
Sbjct: 623 FYPQKSS-------KAYQYHSYNGWNRDAYSLRSWGL-----GFLPQASIDLTPQTFNEK 670
Query: 343 VGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER 389
V + ++ F A W P + F P+ + IK +
Sbjct: 671 VLQG----------KTHWVVDFYAPWSGPSQNFAPEFELLARMIKGK 707
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 3e-05
Identities = 44/359 (12%), Positives = 93/359 (25%), Gaps = 27/359 (7%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY----FSKMPWL--- 96
F + P E E+ G + V+ +D + + +
Sbjct: 140 FYSPGSSHSHDLAPTWREFAKEV--DGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSG 197
Query: 97 --AVPFSDSETRDKLDE-LFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVER 153
AV ++ +++ L + + + N + + +
Sbjct: 198 MAAVKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAFAAGVGWLITFCSKG--- 254
Query: 154 IKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASA 213
++ + R + L ++ D + D T + ++
Sbjct: 255 -EDCLTSQTRLRLSGMLDGLVNVGWVD--CDAQDSLCKSLDTTASTTAYFPPGATLNDRE 311
Query: 214 EFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA-RY 272
+ + + + + E + + L WL K+
Sbjct: 312 KSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHFGKNENANDPEL 371
Query: 273 FELSTL--PTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTL 330
+L TL + + + + + F + E EI K+ +
Sbjct: 372 KKLKTLLKNEHIQVVRFDCSSAPGICSDLYVFQPSLAVFKGQGTKE-YEIHHGKKILYDI 430
Query: 331 ESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLP---KLIDAYKKI 386
+ V P SD + L+ F A W PP RA LP K
Sbjct: 431 LAFAKESVNSHVTTLGPQNFPASD--KEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ 487
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 5e-07
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 20/95 (21%)
Query: 36 LKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPW 95
L+G L + C C R P L + E+ + +
Sbjct: 30 LQGDAILAVYSKTCPHCHRDWPQLIQASKEV-----------DVPIVMFIWGSLIGER-- 76
Query: 96 LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
+ V G P LV + G++
Sbjct: 77 ------ELSAARLEMNKAGVEGTPTLVFY-KEGRI 104
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-06
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 26/91 (28%)
Query: 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR--DQTSFDEFFKG 413
+T + CP CR F L + K + FI+S+ F
Sbjct: 28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETK-----AHIYFINSEEPSQLNDLQAFRS- 81
Query: 414 MPWLALPFGDARKASLSRKFKVSGIPMLVAI 444
++ + +P V I
Sbjct: 82 ------------------RYGIPTVPGFVHI 94
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-06
Identities = 12/96 (12%), Positives = 30/96 (31%), Gaps = 27/96 (28%)
Query: 37 KGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD--EDDEAFKGYFSKMP 94
K + C C++F L+ V E + F++ + + + S+
Sbjct: 29 KETATFFIGRKTCPYCRKFAGTLSGVVAET----KAHIYFINSEEPSQLNDLQAFRSR-- 82
Query: 95 WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
+ + +P V + +G++
Sbjct: 83 ------------------YGIPTVPGFVHI-TDGQI 99
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 4e-06
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 25/96 (26%)
Query: 38 GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLA 97
+ + +WCGPC+R + ++ + + L D + F KM
Sbjct: 28 KLLFVDCFTTWCGPCKRLSKVVFK--DSL-----------VADYFNRHFVNL--KM---- 68
Query: 98 VPFSDSETRD--KLDELFKVMGIPHLVILDENGKVL 131
D E + +L + + V P L+ ++ +G+V+
Sbjct: 69 ----DMEKGEGVELRKKYGVHAYPTLLFINSSGEVV 100
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 21/97 (21%)
Query: 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 416
K + + WC PC+ + N + + ++ +
Sbjct: 27 DKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGV---------- 76
Query: 417 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453
L +K+ V P L+ I SG + +
Sbjct: 77 -----------ELRKKYGVHAYPTLLFINSSGEVVYR 102
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-06
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
LYF SW PC+ + + NE S V F+S D D+
Sbjct: 26 LYFHTSWAEPCKALKQVFEAISNEPSNS---NVSFLSIDADE 64
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 3e-04
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 25/89 (28%)
Query: 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415
K I+LYF W PC+A ++ I + V F+S D D+ S
Sbjct: 20 GDKLIVLYFHTSWAEPCKALKQV----FEAISNEPSNSNVSFLSIDADENS--------- 66
Query: 416 WLALPFGDARKASLSRKFKVSGIPMLVAI 444
+S F++S +P + I
Sbjct: 67 ------------EISELFEISAVPYFIII 83
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 7e-06
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 28/88 (31%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F + C C+ +L + +V S D + P L
Sbjct: 26 FHKNLCPHCKNMEKVLDKFGARAP-----QVAISSVDSEAR---------PELM------ 65
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKVL 131
+ +P LV + +GKV
Sbjct: 66 -------KELGFERVPTLVFI-RDGKVA 85
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 7e-06
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 25/104 (24%)
Query: 39 KIGLYFSAS-WCGPCQRF------TPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91
IGL+F+ S WC C + + ++ V + + +
Sbjct: 49 PIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV-----HLHMVEVDFPQKNHQPEEQRQ 103
Query: 92 KMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGG 135
K L +KV G P LV +D GK L+ G
Sbjct: 104 KNQELK-------------AQYKVTGFPELVFIDAEGKQLARMG 134
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 8e-05
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 15/99 (15%)
Query: 357 GKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFDEFFKGM 414
K I L+F+ + WC C + I + K + + D Q +
Sbjct: 47 HKPIGLFFTGSDWCMWCIK-MQDQILQSSEFKHFAGVH--LHMVEVDFPQKNHQP----- 98
Query: 415 PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453
+ L ++KV+G P LV I G+ + +
Sbjct: 99 -----EEQRQKNQELKAQYKVTGFPELVFIDAEGKQLAR 132
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-05
Identities = 17/84 (20%), Positives = 22/84 (26%), Gaps = 18/84 (21%)
Query: 12 QSLLSSSARDFLIRSNGDQVK-----------LDSLKGK-IGLYFSASWCGPCQRFTPIL 59
SS R+ L S + I + F A WC PC +
Sbjct: 3 HHHHHSSGRENLYFQGQSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYF 62
Query: 60 AEVYNELSRQGDFEVIFVSGDEDD 83
N + V V D D
Sbjct: 63 KNQLNY------YYVTLVDIDVDI 80
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-05
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 26/88 (29%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
++AE+ E Q D++V ++ +
Sbjct: 43 SDPRRTPEVSDNPVMIAELLREFP-QFDWQVAVADLEQSEA------------------- 82
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKVL 131
+ + F V P ++ +GK+
Sbjct: 83 -----IGDRFNVRRFPATLVF-TDGKLR 104
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 33/107 (30%)
Query: 356 AGKTILLYFSAHWCPPCRAF------LPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 409
G+ +++YF + CP C+ P + + F+ + + +
Sbjct: 18 HGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA----------RFVVASVSVDTPEG 67
Query: 410 FFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456
L+R+++V G P V + P + R
Sbjct: 68 -----------------QELARRYRVPGTPTFVFLVPKAGAWEEVGR 97
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 7e-04
Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 27/128 (21%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPF- 100
+YF + C CQ+ V + D ++
Sbjct: 24 VYFHSEHCPYCQQMN---TFVLS------------------DPGVSRLLEAR-FVVASVS 61
Query: 101 SDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160
D+ +L ++V G P V L E+ R +G ++ ++++ +
Sbjct: 62 VDTPEGQELARRYRVPGTPTFVFLVPKAGAWE----EVGRLFGSRPRAEFLKELRQVCVK 117
Query: 161 EERAKREQ 168
Sbjct: 118 GGACGEGH 125
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-05
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
+ F+ CGPC R P + + N+ + +F+ D
Sbjct: 26 VKFTMRGCGPCLRIAPAFSSMSNKYP-----QAVFLEVDVHQ 62
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 3e-05
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A WCGPC+ P + + E+ EV F D D
Sbjct: 26 FFAQWCGPCRNIAPKVEALAKEIP-----EVEFAKVDVDQ 60
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A Length = 200 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 319 EIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLP 377
E Q+ E ++ + G G + +L GK ++YF CP C L
Sbjct: 4 ETQKEAEANRGYGKPSLGGPFHLE-DMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELD 62
Query: 378 KLIDAYKKI-KERNESLEVVFISSD--RD--------QTSFDEFFKGM 414
KL + + +L+ +FI+ D RD + F G+
Sbjct: 63 KLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGL 110
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-05
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A+WCGPC+ +P L ELS Q V+ + D D+
Sbjct: 27 FFATWCGPCKMISPKLV----ELSTQFADNVVVLKVDVDE 62
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 4e-05
Identities = 52/408 (12%), Positives = 103/408 (25%), Gaps = 69/408 (16%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQG----------------DFEV-------IFVSGD 80
F A WCG C+ P + L + + + IF + D
Sbjct: 38 FFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSD 97
Query: 81 EDD----------EAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI--------PHLV 122
++ EA + K AV +E F I
Sbjct: 98 VNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNA 157
Query: 123 ILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKE------QEERAKREQSLRSVLTS 176
+ + E + + ++ M E ++ L
Sbjct: 158 TFYSMANKHFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQV 217
Query: 177 HSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIV 236
+ + DG + G +G F + E+ P E+ +K +G V
Sbjct: 218 EALPYFGEIDGSVFAQYVESGLPLGYLFYNDE-EELEEYKPLFTELAKKNRGL---MNFV 273
Query: 237 LISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296
I + D + + +LS + +
Sbjct: 274 SIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESK-AIE 332
Query: 297 EAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLA 356
+++ F + + + Q E + LV + D +V
Sbjct: 333 SLVKD-------FLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPK--------- 376
Query: 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
K +L+ + A WC C+ P + + + + +
Sbjct: 377 -KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND 423
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-05
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
+ FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 25 VDFSATWCGPCKMIKPFFHSLSEKYS-----NVIFLEVDVDD 61
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Length = 170 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 4e-05
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 335 VSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERNESL 393
V GD+ V G + + +L GK I+L C C L+ K+ +
Sbjct: 7 VPGDITLV-DSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDF 65
Query: 394 EVVFISSD-RD 403
V+ + D +D
Sbjct: 66 WVITFTFDPKD 76
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Length = 170 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 5e-05
Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 20/130 (15%)
Query: 21 DF-LIRSNGDQVKLDSLKGKIGL-YFSASWC-GPCQRFTPILAEVYNELSRQG-DFEVIF 76
D L+ S G++ +L +LKGK + + C C T L +V +L G DF VI
Sbjct: 10 DITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVIT 69
Query: 77 VSGDEDD--EAFKGYFSKM-----PWLAVPFSDSETRDKLDELFKVM------GIPH--- 120
+ D D E K + + W V SE KL + H
Sbjct: 70 FTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNV 129
Query: 121 LVILDENGKV 130
+V+L ++
Sbjct: 130 VVVLSPELQI 139
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-05
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 27/87 (31%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F++ C C ++ EV NE+ EV +++ E +
Sbjct: 9 FTSPMCPHCPAAKRVVEEVANEMP--DAVEVEYINVME--------------------NP 46
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKV 130
+ + + +M +P +VI + + +
Sbjct: 47 QKAME----YGIMAVPTIVI-NGDVEF 68
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-05
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F+A+WCGPC+ P+ LS +VIF+ D D
Sbjct: 31 FTATWCGPCKMIAPLFE----TLSNDYAGKVIFLKVDVDA 66
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 5e-05
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
WCGPC+ P ++ E +VIF+ D + E
Sbjct: 44 MFTQWCGPCKAMAPKYEKLAEEYL-----DVIFLKLDCNQE 79
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-05
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 3 MNGANSHD----IQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPI 58
M G++ H ++ + S +A + + GD++ + + FSA+WCGP + P
Sbjct: 1 MRGSHHHHHHGSVKQIESKTAFQEALDAAGDKLVV--------VDFSATWCGPSKMIKPF 52
Query: 59 LAEVYNELSRQGDFEVIFVSGDEDD 83
+ + S VIF+ D DD
Sbjct: 53 FHSLSEKYS-----NVIFLEVDVDD 72
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 5e-05
Identities = 63/474 (13%), Positives = 130/474 (27%), Gaps = 105/474 (22%)
Query: 23 LIRSNGDQVKLDSLKGKIGL-YFSASWCGPCQRFTPILAEVYNELSRQG----------- 70
L N + D+ + L F A WCG +R P L
Sbjct: 6 LTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANT 65
Query: 71 ----DFEV-------IFVSGDE--------DDEAFKGYFSKMPWLAV-PFSDSETRDKL- 109
+ V IF G+E + + K A P E K
Sbjct: 66 NTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFI 125
Query: 110 --DELFKVMGIPHLV------------ILDENGKVLSDGGVEIIREYGVEGYPFTVERIK 155
+ V L +N + ++ EY G + R
Sbjct: 126 SDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDNGEGIILFRPS 185
Query: 156 EMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKI------SVSDLEGKTIGLYFSMSSY 209
+ + E + + + + + F+ + + ++GK + + + Y
Sbjct: 186 HLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYDVDY 245
Query: 210 KASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 269
+ +A+ + + K L ++F +L
Sbjct: 246 EKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHEL---------------SDF 290
Query: 270 ARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAF--PFTPEKFAELAEIQRAKEES 327
+P + I G+ + + + F + + + E +
Sbjct: 291 GLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESN 350
Query: 328 QTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIK 387
V+V+ + D +V K +L+ F A WC C+ PK + +K+
Sbjct: 351 DGPVKVVVAENFDEIVNNEN----------KDVLIEFYAPWCGHCKNLEPKYKELGEKLS 400
Query: 388 ERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPML 441
+ + ++ + + DA + ++V G P +
Sbjct: 401 K-DPNIVIAKM------------------------DATANDVPSPYEVRGFPTI 429
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-05
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
WCGP + P ++ E +VIF+ D + E
Sbjct: 31 MFTQWCGPSKAMAPKYEKLAEEYL-----DVIFLKLDCNQE 66
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 7e-05
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 31/88 (35%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE-AFKGYFSKMPWLAVPFSD 102
F++ C C ++ E E +V + D E A +
Sbjct: 8 FTSPTCPYCPMAIEVVDEAKKEFG--DKIDVEKIDIMVDREKAIE--------------- 50
Query: 103 SETRDKLDELFKVMGIPHLVILDENGKV 130
+ +M +P + I NG V
Sbjct: 51 ----------YGLMAVPAIAI---NGVV 65
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Length = 172 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 7e-05
Identities = 21/128 (16%), Positives = 34/128 (26%), Gaps = 16/128 (12%)
Query: 340 DFVVGKNGGKVPVSDL---------AGKTILLYFSAHWCPPCRA-----FLPKLIDAYKK 385
DF + N D K ++L F+ + C CR + + +
Sbjct: 21 DFNLYTNEVHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSI-- 78
Query: 386 IKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIG 445
I + + + G GD KF + P V I
Sbjct: 79 INNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRVKFGANAQPFYVLID 138
Query: 446 PSGRTITK 453
G + K
Sbjct: 139 NEGNPLNK 146
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Length = 172 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 2e-04
Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 25/145 (17%)
Query: 18 SARDFLIRSNGDQVKLDSLK---------GK-IGLYFSASWCGPCQRF------TPILAE 61
+DF + +N K D K + L F+ C C++ P ++
Sbjct: 18 KTQDFNLYTNEVHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSS 77
Query: 62 VYNELSRQGDFEVIFVSGDEDDEAFKG--YFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119
+ N D+ +I + D + + + F P
Sbjct: 78 IINN-----DYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRVKFGANAQP 132
Query: 120 HLVILDENGKVLSD--GGVEIIREY 142
V++D G L+ E I +Y
Sbjct: 133 FYVLIDNEGNPLNKSYAYDEDISKY 157
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 8e-05
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A+WCGPC+ P+ E+ + ++ IFV D D
Sbjct: 40 FFATWCGPCKTIAPLFKELSEK------YDAIFVKVDVDK 73
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 9e-05
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A WCGPC+R P E ++ ++F+ D D+
Sbjct: 33 FFAEWCGPCKRIAPFYEECSKTYTK-----MVFIKVDVDE 67
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 9e-05
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 353 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 410
D + LL F C C + ++ Y E + V + E
Sbjct: 14 DDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE-GRAAPVQRLQMRDPLPPGLEL 70
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 3e-04
Identities = 12/58 (20%), Positives = 15/58 (25%), Gaps = 2/58 (3%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP 99
L F C C R+ +A Y V + D G P P
Sbjct: 23 LMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRL--QMRDPLPPGLELARPVTFTP 78
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F+ASWCGPC+ P+ A++ + +F+ D D+
Sbjct: 41 FTASWCGPCRIMAPVFADLAKKFP-----NAVFLKVDVDE 75
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 42/259 (16%), Positives = 76/259 (29%), Gaps = 40/259 (15%)
Query: 137 EIIREYGVEGYPFTVERIKEMKEQEERAKRE-QSLRSVLTSHSRDFVI-SSDGRKISVSD 194
++ +Y ++ + + + + ++L + + VI ++ +
Sbjct: 73 DVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFG 132
Query: 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM 254
E KT L F S E KGK I+ I +D + +R L
Sbjct: 133 GEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK-----ILFIFIDSDHTDNQRILEFF 187
Query: 255 PWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKF 314
+ P + +I + + T E+
Sbjct: 188 G-----------------LKKEECPAVRLITLEEEMTKYKPESE---------ELTAERI 221
Query: 315 AELAEIQRAKEESQTLESVLVSGDLDF-----VVGKNGGKVPVSDLAGKTILLYFSAHWC 369
E + L S + D D +VGKN V D K + + F A WC
Sbjct: 222 TEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDV-AFD-EKKNVFVEFYAPWC 279
Query: 370 PPCRAFLPKLIDAYKKIKE 388
C+ P + K+
Sbjct: 280 GHCKQLAPIWDKLGETYKD 298
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F+ASWCGPC+ P A++ +L V+F+ D D+
Sbjct: 45 FTASWCGPCRFIAPFFADLAKKLP-----NVLFLKVDTDE 79
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 3 MNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEV 62
M + + + D + + D KL + + F+ASWCGPC+ P+ AE
Sbjct: 1 MAAEEG-AVIACHTKQEFDTHMANGKDTGKL------VIIDFTASWCGPCRVIAPVFAEY 53
Query: 63 YNELSRQGDFEVIFVSGDEDD 83
+ IF+ D D+
Sbjct: 54 AKKFP-----GAIFLKVDVDE 69
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A+WCGPC+ P++ + + + F D D+
Sbjct: 31 FYATWCGPCKMIAPMIEKFSEQYPQ-----ADFYKLDVDE 65
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 1 MNMNGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILA 60
+ + G N H I + D + K+ + FSA WCGP ++ P
Sbjct: 19 IELAGGNVHLITTK---ERWDQKLSEASRDGKI------VLANFSARWCGPSRQIAPYYI 69
Query: 61 EVYNELSRQGDFEVIFVSGDEDD 83
E+ ++F+ D D+
Sbjct: 70 ELSENYP-----SLMFLVIDVDE 87
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
+ F+ASWCGPC+ P+ AE + +F+ D D+
Sbjct: 41 IDFTASWCGPCRFIAPVFAEYAKKFP-----GAVFLKVDVDE 77
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 27/87 (31%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
FS C CQ+ TP+L E+ + F +V +E+ L FS
Sbjct: 29 FSRKNCHVCQKVTPVLEELRLNY--EESFGFYYVDVEEE-----------KTLFQRFS-- 73
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKV 130
+ G+P ++ ++G+
Sbjct: 74 -----------LKGVPQILYF-KDGEY 88
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A+WCGPC+ P L ++ +V FV D D+
Sbjct: 37 FYATWCGPCKMMQPHLTKLIQAYP-----DVRFVKCDVDE 71
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A+WCGPCQR IL + +V F+ D D
Sbjct: 30 FFATWCGPCQRLGQILPSIAEANK-----DVTFIKVDVDK 64
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 2e-04
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F+ASWC PC+ PI AE+ + V F+ D D+
Sbjct: 33 FTASWCPPCKMIAPIFAELAKKFP-----NVTFLKVDVDE 67
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F+A WCGPC+ + ++ E V F D D+
Sbjct: 44 FTAVWCGPCKTIERPMEKIAYEFP-----TVKFAKVDADN 78
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} Length = 172 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 348 GKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKI-KERNESLEVVFISSD--RD 403
G V +S K +LL+F CP C L L AY+K+ + E ++V+F+S D RD
Sbjct: 26 GPVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERD 85
Query: 404 --------QTSFDEFFKGM 414
+F F G+
Sbjct: 86 PPEVADRYAKAFHPSFLGL 104
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A+WCGPC+ P+ ++ + + +V F D D+
Sbjct: 40 FWATWCGPCKMIGPVFEKISDTPAGD---KVGFYKVDVDE 76
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 27/89 (30%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F A WCGPC+ F PI AE E + + V FV + + E P L+ F
Sbjct: 62 FWAPWCGPCRSFAPIFAETAAERAGK----VRFVKVNTEAE---------PALSTRFR-- 106
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKVLS 132
+ IP +++ NGK++
Sbjct: 107 -----------IRSIPTIMLY-RNGKMID 123
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
++F A W C + ++AE+ EL + V FV + +
Sbjct: 37 VHFWAPWAPQCAQMNEVMAELAKELPQ-----VSFVKLEAEG 73
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A Length = 174 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERNESLEVVFISSD--R 402
+G V + L G+ L F C C + D KK+K N + ++ S D
Sbjct: 22 DGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPEN 81
Query: 403 D--------QTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435
D ++ F +L + + FK
Sbjct: 82 DKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKA 122
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 27/89 (30%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F A WCGPC++ P L+ Q V D P +A
Sbjct: 71 FWAPWCGPCRQMAPQFQAAAATLAGQ----VRLAKIDTQAH---------PAVAGRHR-- 115
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKVLS 132
+ GIP ++ G+ L+
Sbjct: 116 -----------IQGIPAFILF-HKGRELA 132
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 5e-04
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 27/87 (31%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
F A WCGPC+ +PIL E+ + G +V+ V+ DE P LA +
Sbjct: 57 FFAPWCGPCRLVSPILEELARDH--AGRLKVVKVNVDEH-----------PGLAARYG-- 101
Query: 104 ETRDKLDELFKVMGIPHLVILDENGKV 130
V +P LV+ G
Sbjct: 102 -----------VRSVPTLVLF-RRGAP 116
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 5e-04
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 44 FSASWCGPCQRFTPILAEVYNELS 67
F A+W CQ F PI A++ + +
Sbjct: 33 FFANWSNDCQSFAPIYADLSLKYN 56
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A Length = 164 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 7e-04
Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 13/85 (15%)
Query: 343 VGKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERNES--LEVVFIS 399
G + D G+ +L+YF CP C L K+I +I L +FIS
Sbjct: 9 TTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFIS 68
Query: 400 SD--RD--------QTSFDEFFKGM 414
D RD F G+
Sbjct: 69 IDPERDTKEAIANYVKEFSPKLVGL 93
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} Length = 171 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 9e-04
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 340 DFV-VGKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERN--ESLEV 395
DF + G +D G+ +L+YF CP C L KL+ ++++ ++
Sbjct: 8 DFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQP 67
Query: 396 VFISSD--RD--------QTSFDEFFKGMPWLALPFGDARK-ASLSRKFKV 435
VFI+ D RD F G+ G ++ A S ++V
Sbjct: 68 VFITVDPERDDVEAMARYVQDFHPRLLGL------TGSTKQVAQASHSYRV 112
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 569 | |||
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.97 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.96 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.96 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.93 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.9 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.9 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.9 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.88 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.87 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.87 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.87 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.87 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.87 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.86 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.86 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.86 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.86 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.85 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.85 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.85 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.85 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.85 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.84 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.84 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.84 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.84 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.84 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.83 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.83 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.83 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.83 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.83 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.83 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.83 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 99.83 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.83 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.83 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.83 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.82 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.82 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.82 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.82 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.82 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.82 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.81 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.81 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.81 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.81 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.81 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.81 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 99.81 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.81 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.81 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.8 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.8 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.8 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.8 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 99.8 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.8 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.8 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.8 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.8 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.79 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.79 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.79 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.79 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.79 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.79 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.79 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.79 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.78 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.78 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.78 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.65 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.78 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.78 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.78 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.78 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.65 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.78 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.78 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.78 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.78 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.78 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.77 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.77 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.77 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.77 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.77 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 99.77 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.77 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.77 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 99.77 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.77 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.76 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.76 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.76 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.76 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.76 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.76 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.76 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 99.76 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.76 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 99.76 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.76 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.76 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.76 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 99.76 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 99.76 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.76 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.76 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.76 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.76 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 99.76 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.76 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 99.76 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.75 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.75 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.75 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.75 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.75 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 99.75 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.75 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 99.75 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 99.75 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 99.75 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.75 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 99.75 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.75 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.75 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.75 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.75 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.75 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.75 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 99.74 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.74 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.74 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 99.74 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.74 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 99.74 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.74 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.74 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 99.74 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 99.74 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 99.74 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.74 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.74 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.74 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 99.74 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.74 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.74 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.74 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.74 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.74 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 99.74 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 99.74 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 99.74 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.74 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.74 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.74 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.74 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.74 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.74 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.73 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.73 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 99.73 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.73 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.73 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.73 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.73 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.72 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.72 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.72 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.72 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.72 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.72 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.57 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.72 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.57 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 99.72 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.72 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 99.72 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.72 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.71 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.71 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.71 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.71 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.71 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.71 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.71 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.71 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.71 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.7 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.7 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 99.7 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.7 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.7 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 99.7 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.69 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.69 | |
| 1v5n_A | 89 | PDI-like hypothetical protein AT1G60420; DC1 domai | 99.69 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 99.69 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 99.68 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.68 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.67 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.67 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 99.67 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.66 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 99.66 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.66 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 99.66 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 99.66 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 99.65 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 99.64 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 99.64 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.63 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.62 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 99.62 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.61 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 99.61 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.61 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.61 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.59 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 99.57 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.56 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.54 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.54 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.54 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.53 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.52 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.51 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.51 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.5 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.5 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.49 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.49 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.49 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.48 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.48 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.47 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.46 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.45 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.45 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.45 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.45 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.45 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.44 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.44 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.44 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.44 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.44 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.43 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.43 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.43 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.43 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.43 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.43 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.43 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.43 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.42 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.42 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.42 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.42 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.42 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.42 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.42 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.42 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.41 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.41 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.41 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.41 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.41 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.41 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.41 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.41 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.41 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.41 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.4 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.4 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.4 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.4 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.39 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.39 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.39 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.39 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.39 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.38 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.38 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.38 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.38 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.38 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.38 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.37 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.37 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.37 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.37 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.36 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.36 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.36 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.36 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.36 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.36 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.35 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 99.04 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.35 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.35 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.35 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.35 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.34 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.34 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.34 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.34 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.34 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.33 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.33 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.33 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.33 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.33 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.32 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.32 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.32 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.32 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.31 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.31 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.31 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.31 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.31 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.31 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.31 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.31 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.31 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.31 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.3 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.3 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.3 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.3 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.3 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.3 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.3 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.29 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.29 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.29 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.29 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.29 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.29 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.28 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.28 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.28 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.28 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.28 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.28 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.27 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.27 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.27 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.27 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.27 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.27 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.27 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.26 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.26 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.26 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.26 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.25 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.25 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.25 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.25 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.25 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.24 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.24 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.24 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.23 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.23 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.23 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.23 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.23 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.23 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.22 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.22 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.22 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.22 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 99.21 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.21 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.21 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.21 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.21 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.21 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.2 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.2 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.2 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.19 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.19 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.19 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.19 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.18 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.18 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.18 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 98.8 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.17 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.17 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 99.17 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.16 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.16 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.16 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.15 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.15 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.14 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.14 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.75 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.13 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.13 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.12 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.12 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.11 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 99.11 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.11 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 99.1 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.1 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.1 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.09 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.08 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.07 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 99.04 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 99.03 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.03 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 99.03 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.01 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.01 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 99.01 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 99.0 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.0 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 98.98 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.96 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 98.95 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.47 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 98.9 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.88 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 98.84 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 98.76 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 98.75 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 98.74 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.74 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 98.73 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.72 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 98.72 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.71 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 98.69 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.67 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.67 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.66 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.6 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.6 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.57 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 98.55 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.54 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 98.53 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.51 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.51 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 98.5 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.46 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.45 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.45 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.43 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 98.41 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 98.39 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 98.38 | |
| 2h8l_A | 252 | Protein disulfide-isomerase A3; thioredoxin-like f | 98.37 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.36 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 98.33 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 98.33 | |
| 3ec3_A | 250 | Protein disulfide-isomerase A4; thioredoxin-like f | 98.3 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 98.23 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 98.23 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.21 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.21 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.2 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 98.17 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.16 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 98.13 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.09 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 98.07 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.05 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 98.01 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 97.99 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 97.95 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 97.94 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 97.87 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 97.84 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 97.83 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 97.77 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 97.76 | |
| 3bj5_A | 147 | Protein disulfide-isomerase; thioredoxin fold, cha | 97.69 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 97.65 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 97.64 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 97.64 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 97.6 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 97.6 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 97.56 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 97.55 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 97.55 | |
| 4dvc_A | 184 | Thiol:disulfide interchange protein DSBA; pilus as | 97.53 |
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-31 Score=298.45 Aligned_cols=289 Identities=13% Similarity=0.124 Sum_probs=204.5
Q ss_pred CCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 34 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
.++.|+ ++|+|||+||++|+.++|.|.+++++++. ++.++.|+++... .+++.
T Consensus 451 ~~~~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~--~v~~~~vd~~~~~------------------------~~~~~ 504 (780)
T 3apo_A 451 PASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYG--QLKVGTLDCTIHE------------------------GLCNM 504 (780)
T ss_dssp CTTCCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH------------------------HHHHH
T ss_pred HHcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEeCCCCH------------------------HHHHH
Confidence 344788 99999999999999999999999999974 5899999998663 48899
Q ss_pred cCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCceeee
Q 008336 113 FKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISV 192 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~ 192 (569)
|+|.++|+++++ ++|++.... | ..+.+.|.++++.... +.+...+++.+..
T Consensus 505 ~~v~~~Pt~~~~-~~g~~~~~~--------g----~~~~~~l~~fi~~~~~----------------~~v~~l~~~~f~~ 555 (780)
T 3apo_A 505 YNIQAYPTTVVF-NQSSIHEYE--------G----HHSAEQILEFIEDLRN----------------PSVVSLTPSTFNE 555 (780)
T ss_dssp TTCCSSSEEEEE-ETTEEEEEC--------S----CSCHHHHHHHHHHHHS----------------CSEEECCHHHHHH
T ss_pred cCCCcCCeEEEE-cCCceeeec--------C----cccHHHHHHHHHhhcc----------------cceeecCcccHHH
Confidence 999999999999 457653221 1 3455666666644211 1122222222221
Q ss_pred cc---ccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHH
Q 008336 193 SD---LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 269 (569)
Q Consensus 193 ~~---~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l 269 (569)
.. ..++.+++.|+++||++|+.+.|.+.++++.++++ +.|+.+|.+. ...+
T Consensus 556 ~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~-----v~~~~vd~~~---------------------~~~l 609 (780)
T 3apo_A 556 LVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL-----INVGSVDCGQ---------------------YHSF 609 (780)
T ss_dssp HTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-----SEEEEEETTT---------------------THHH
T ss_pred HhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCC-----eEEEEEECcc---------------------hHHH
Confidence 11 12467899999999999999999999999999764 6666666653 4578
Q ss_pred HhhcccCCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCccceecCCCCc
Q 008336 270 ARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGK 349 (569)
Q Consensus 270 ~~~f~v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~~~g~~ 349 (569)
++.|+|+++|+++++..+++.... . ..| ...+.+.+.+.+++.... +..+...++..
T Consensus 610 ~~~~~v~~~Pti~~~~~~~~~~~~-~----~~y--~g~~~~~~~l~~fi~~~~----------------~~~v~~l~~~~ 666 (780)
T 3apo_A 610 CTQENVQRYPEIRFYPQKSSKAYQ-Y----HSY--NGWNRDAYSLRSWGLGFL----------------PQASIDLTPQT 666 (780)
T ss_dssp HHHTTCCSSSEEEEECCCSSSCCS-C----EEC--CCSCCSHHHHHHHHHTTS----------------CCCSEEECHHH
T ss_pred HHHcCCCCCCeEEEEcCCCcCccc-h----hhc--CCCCCCHHHHHHHHhhhc----------------ccccccCCHHH
Confidence 899999999999999865431100 0 001 011346677777665321 11111122222
Q ss_pred ee-cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHH
Q 008336 350 VP-VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 428 (569)
Q Consensus 350 v~-l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 428 (569)
+. .-.-.+++++|+||++||++|+.+.|.|++++++++++ +.++.|+++..+ .
T Consensus 667 ~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~---~~~~~vd~~~~~-----------------------~ 720 (780)
T 3apo_A 667 FNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGK---VRAGKVDCQAYP-----------------------Q 720 (780)
T ss_dssp HHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTCH-----------------------H
T ss_pred HHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---ceEEEEECCCCH-----------------------H
Confidence 21 00113789999999999999999999999999999754 889999888664 4
Q ss_pred HHHhcCCCCccEEEEECCCCcEEEc
Q 008336 429 LSRKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 429 l~~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
+++.|+|+++||++++ ++|+++.+
T Consensus 721 ~~~~~~v~~~Pt~~~~-~~g~~~~~ 744 (780)
T 3apo_A 721 TCQKAGIKAYPSVKLY-QYERAKKS 744 (780)
T ss_dssp HHHHTTCCSSSEEEEE-EEETTTTE
T ss_pred HHHhcCCCcCCEEEEE-cCCCcccc
Confidence 8899999999999999 78876644
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=258.60 Aligned_cols=171 Identities=15% Similarity=0.224 Sum_probs=121.0
Q ss_pred HHHHHhhcccC----CCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChH--HHHHHHHHHHHHHhhhhhhhhhccCCc
Q 008336 266 REKLARYFELS----TLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPE--KFAELAEIQRAKEESQTLESVLVSGDL 339 (569)
Q Consensus 266 ~~~l~~~f~v~----~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~ 339 (569)
....+++||+. ..|.+++++.++...... -.++.+ .+..|.....++...+.+++...+...
T Consensus 283 ~~~~l~~~gl~~~~~~~P~~~i~~~~~~ky~~~------------~~~t~e~~~l~~f~~~~~~g~~~~~~~s~~~p~~~ 350 (481)
T 3f8u_A 283 FSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQ------------EEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESN 350 (481)
T ss_dssp THHHHGGGTCCCCTTCSCEEEEECSSSCEEECC------------SCCCTTSHHHHHHHHHHHHTCCCCCCCCCCCCSCC
T ss_pred HHHHHHHcCCCcccCCCcEEEEEcCCCcccCCC------------cccCccHHHHHHHHHHHhcCCcccccccCCCCCCC
Confidence 56678999997 689999998655322110 146778 999999999999888888877665543
Q ss_pred ccee-cCCCCceecccC-CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCc
Q 008336 340 DFVV-GKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 417 (569)
Q Consensus 340 ~f~~-~~~g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~ 417 (569)
+-.+ ..+|+.+..... .+|+|+|+|||+||++|++++|.|.++++.+++. .++.++.|+.+.+
T Consensus 351 ~~~v~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~~v~~~~id~~~~-------------- 415 (481)
T 3f8u_A 351 DGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKD-PNIVIAKMDATAN-------------- 415 (481)
T ss_dssp CSSSEEECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTC-SSEEEEEEETTSS--------------
T ss_pred CCCeEEecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccC-CCEEEEEEECCch--------------
Confidence 3222 444444432222 3899999999999999999999999999999763 2477777766543
Q ss_pred ccccCchhhHHHHHhcCCCCccEEEEECCCCcE-EEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcC
Q 008336 418 ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRT-ITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 487 (569)
Q Consensus 418 ~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i-~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~ 487 (569)
++++.|+|.++||+++++++|++ +.+. .| ....+.|.+.|++.+..
T Consensus 416 ----------~~~~~~~v~~~Pt~~~~~~~~~~~~~~~-------~G-------~~~~~~l~~~l~~~~~~ 462 (481)
T 3f8u_A 416 ----------DVPSPYEVRGFPTIYFSPANKKLNPKKY-------EG-------GRELSDFISYLQREATN 462 (481)
T ss_dssp ----------CCCTTCCCCSSSEEEEECTTCTTSCEEC-------CS-------CCSHHHHHHHHHHHCSS
T ss_pred ----------hhHhhCCCcccCEEEEEeCCCeEeeeEe-------CC-------CCCHHHHHHHHHHhcCC
Confidence 25678999999999999887763 2221 11 12345667777766543
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-29 Score=267.62 Aligned_cols=341 Identities=16% Similarity=0.283 Sum_probs=187.7
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+|||+||++|+++.|.+.++++.++.. ++.++.|+++... .+++.|+|
T Consensus 30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~-~v~~~~vd~~~~~------------------------~l~~~~~v 84 (504)
T 2b5e_A 30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-NITLAQIDCTENQ------------------------DLCMEHNI 84 (504)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccC-CeEEEEEECCCCH------------------------HHHHhcCC
Confidence 477 999999999999999999999999999865 4999999998774 49999999
Q ss_pred CCccEEEEECCCCc---EEEcCCcceeecccCCCCCccHHHHHHHHHHH------------------H------------
Q 008336 116 MGIPHLVILDENGK---VLSDGGVEIIREYGVEGYPFTVERIKEMKEQE------------------E------------ 162 (569)
Q Consensus 116 ~~~P~~~lid~~G~---i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------~------------ 162 (569)
+++||++++. +|+ +....|.+ +.+.+.+++... .
T Consensus 85 ~~~Pt~~~~~-~g~~~~~~~~~G~~------------~~~~l~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~~v~~f~~~ 151 (504)
T 2b5e_A 85 PGFPSLKIFK-NSDVNNSIDYEGPR------------TAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQSGKI 151 (504)
T ss_dssp CSSSEEEEEE-TTCTTCEEECCSCC------------SHHHHHHHHHHHTSCSEEECSCHHHHHHHSCCSSCEEEEEESC
T ss_pred CcCCEEEEEe-CCccccceeecCCC------------CHHHHHHHHHHhcCCcceeHHHHHHHHhcCCCceEEEEEeCCC
Confidence 9999999995 565 55444432 222222222111 0
Q ss_pred ----------HHHhh-ccccccccc-----CCCceee-cCCCceeeeccccCc--------EEEEEEecCCcccchhhhH
Q 008336 163 ----------RAKRE-QSLRSVLTS-----HSRDFVI-SSDGRKISVSDLEGK--------TIGLYFSMSSYKASAEFTP 217 (569)
Q Consensus 163 ----------~~~~~-~~l~~~~~~-----~~~d~~~-~~~~~~~~~~~~~gk--------~v~l~f~~~~~~~c~~~~~ 217 (569)
.+... ..+...... .....++ ...+..+. ..|+ .+.-|......|.|..+++
T Consensus 152 ~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~i~l~~~~~~~~~---~~g~~~~~~~~~~l~~fi~~~~~p~v~~~t~ 228 (504)
T 2b5e_A 152 DADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYLPSAMDEPVV---YNGKKADIADADVFEKWLQVEALPYFGEIDG 228 (504)
T ss_dssp CHHHHHHHHHHHHHTTTTCEEEEEECTTSCCEEEEEETTEEEEEEE---CCSCHHHHTSHHHHHHHHHHHSSCSSCBCCH
T ss_pred CchHHHHHHHHHHHhhcCcEEEEEHHHHHhcCCeEEecCCCCcccc---cCCcccccCCHHHHHHHHHhcccCCcccCCH
Confidence 00000 000000000 0000000 00000000 1111 1111222333344444444
Q ss_pred HHHHHHHHHhcCCCceEEEEeeccccHHHHHHHh--------cCCCcccccCCchhHHHHHhhccc-CCCceEEEECCCC
Q 008336 218 RLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL--------GSMPWLALPFKDKSREKLARYFEL-STLPTLVIIGPDG 288 (569)
Q Consensus 218 ~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~--------~~~~~~~~~~~d~~~~~l~~~f~v-~~~Ptlvi~~~~g 288 (569)
.... .+.+.+..+.++++..+.....+...+ .++.++.++ ......+++.||+ ..+|++++++...
T Consensus 229 ~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~a~~~~~~i~F~~id--~~~~~~~~~~~gl~~~~P~v~i~~~~~ 303 (504)
T 2b5e_A 229 SVFA---QYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSID--ARKFGRHAGNLNMKEQFPLFAIHDMTE 303 (504)
T ss_dssp HHHH---HHHHTTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTTCEEEEEE--HHHHTTHHHHTTCCSCSSEEEEEETTT
T ss_pred hHHH---HHhcCCCcEEEEEecCcccHHHHHHHHHHHHHhcCCeeEEEEEe--hhhhHHHHHHcCCcccCCEEEEEeCCc
Confidence 3322 222223333333332211111111111 112121111 1124567899999 3599999998632
Q ss_pred --Cchhhh-hHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCccc-eecCCCCceecccC-CCCEEEEE
Q 008336 289 --KTLHSN-VAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDF-VVGKNGGKVPVSDL-AGKTILLY 363 (569)
Q Consensus 289 --~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f-~~~~~g~~v~l~~~-~gk~vll~ 363 (569)
++.... ........ ...-.++.+.+..+......+...+.+++...+...+- +...+++.+..... .+|++||+
T Consensus 304 ~~ky~~~~~~~~~~~~~-~~~~~~~~~~l~~f~~~~~~g~~~p~~~s~~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~ 382 (504)
T 2b5e_A 304 DLKYGLPQLSEEAFDEL-SDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVL 382 (504)
T ss_dssp TEEEECCCCCHHHHHTC-CSCCCCCHHHHHHHHHHHHHTCCCCCCCCCCCCCCCSCSEEEECTTTHHHHHHCTTCCEEEE
T ss_pred CcccCCCCCccchhhcc-ccccccCHHHHHHHHHHHHcCCCChhhhcCCCCccccccceecccccHHHhhccCCCCEEEE
Confidence 222110 00000000 00012688999999998888877777666554433222 22445554432211 37999999
Q ss_pred EecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccEEEE
Q 008336 364 FSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVA 443 (569)
Q Consensus 364 F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~l 443 (569)
|||+||++|+.+.|.|.++++.++....++.++.++.+.+. +.+ |+|+++||+++
T Consensus 383 F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~------------------------~~~-~~v~~~Pt~~~ 437 (504)
T 2b5e_A 383 YYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND------------------------VRG-VVIEGYPTIVL 437 (504)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCC------------------------CSS-CCCSSSSEEEE
T ss_pred EECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccc------------------------ccc-CCceecCeEEE
Confidence 99999999999999999999999732234666666554331 233 99999999999
Q ss_pred ECCCCcE
Q 008336 444 IGPSGRT 450 (569)
Q Consensus 444 id~~G~i 450 (569)
+ ++|+.
T Consensus 438 ~-~~G~~ 443 (504)
T 2b5e_A 438 Y-PGGKK 443 (504)
T ss_dssp E-CCTTS
T ss_pred E-eCCce
Confidence 9 77864
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-26 Score=257.44 Aligned_cols=174 Identities=15% Similarity=0.212 Sum_probs=125.6
Q ss_pred cCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhccc
Q 008336 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (569)
Q Consensus 196 ~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v 275 (569)
.++.+++.|+++||++|+.+.|.+.+++++++++ +.|+.+|.++ ...+++.|+|
T Consensus 454 ~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~-----v~~~~vd~~~---------------------~~~~~~~~~v 507 (780)
T 3apo_A 454 DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ-----LKVGTLDCTI---------------------HEGLCNMYNI 507 (780)
T ss_dssp CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-----CEEEEEETTT---------------------CHHHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-----eEEEEEeCCC---------------------CHHHHHHcCC
Confidence 6789999999999999999999999999998743 4455554433 3568899999
Q ss_pred CCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCcccee-cCCCCceeccc
Q 008336 276 STLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVV-GKNGGKVPVSD 354 (569)
Q Consensus 276 ~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~~g~~v~l~~ 354 (569)
+++|++++++. |+.... .| ..+.+.+.+++..... +.+. .+ ..+.+.+....
T Consensus 508 ~~~Pt~~~~~~-g~~~~~--------~g----~~~~~~l~~fi~~~~~----~~v~----------~l~~~~f~~~v~~~ 560 (780)
T 3apo_A 508 QAYPTTVVFNQ-SSIHEY--------EG----HHSAEQILEFIEDLRN----PSVV----------SLTPSTFNELVKQR 560 (780)
T ss_dssp CSSSEEEEEET-TEEEEE--------CS----CSCHHHHHHHHHHHHS----CSEE----------ECCHHHHHHHTTTC
T ss_pred CcCCeEEEEcC-Cceeee--------cC----cccHHHHHHHHHhhcc----ccee----------ecCcccHHHHhhcc
Confidence 99999999954 443110 11 3577788877775443 1111 11 11111111221
Q ss_pred CCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 355 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 355 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
-.+++++|.||+|||++|+++.|.+.++++.++++ +.++.++.+... .+++.|+
T Consensus 561 ~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~ 614 (780)
T 3apo_A 561 KHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL---INVGSVDCGQYH-----------------------SFCTQEN 614 (780)
T ss_dssp CTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTTH-----------------------HHHHHTT
T ss_pred CCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCC---eEEEEEECcchH-----------------------HHHHHcC
Confidence 12568999999999999999999999999999864 777777766543 4889999
Q ss_pred CCCccEEEEECCCC
Q 008336 435 VSGIPMLVAIGPSG 448 (569)
Q Consensus 435 v~~~Pt~~lid~~G 448 (569)
|.++|+++++.+++
T Consensus 615 v~~~Pti~~~~~~~ 628 (780)
T 3apo_A 615 VQRYPEIRFYPQKS 628 (780)
T ss_dssp CCSSSEEEEECCCS
T ss_pred CCCCCeEEEEcCCC
Confidence 99999999996543
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=206.86 Aligned_cols=291 Identities=18% Similarity=0.217 Sum_probs=192.9
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
++|-|+..-+..+ ...|.++++.+. ++.+..+ . + ..+++.|++.. |
T Consensus 38 ~vvgff~~~~~~~---~~~f~~~A~~~~---~~~F~~t--~-~------------------------~~v~~~~~v~~-~ 83 (361)
T 3uem_A 38 AVIGFFKDVESDS---AKQFLQAAEAID---DIPFGIT--S-N------------------------SDVFSKYQLDK-D 83 (361)
T ss_dssp EEEEECSCTTSHH---HHHHHHHHHHCS---SSCEEEE--C-C------------------------HHHHHHTTCSS-S
T ss_pred EEEEEEcCCCchH---HHHHHHHHhcCC---CceEEEE--C-c------------------------HHHHHHhCCCC-C
Confidence 7777777655544 457788888772 2434322 2 2 25888999987 8
Q ss_pred EEEEECC--CCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCceeeec-ccc
Q 008336 120 HLVILDE--NGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVS-DLE 196 (569)
Q Consensus 120 ~~~lid~--~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~-~~~ 196 (569)
+++++.+ ++.+.. + | +++.+.|.+++.. ...+.+...+.+++... ...
T Consensus 84 ~i~lfk~f~~~~~~~-~--------g----~~~~~~i~~fi~~----------------~~~p~v~~~~~~~~~~~~~~~ 134 (361)
T 3uem_A 84 GVVLFKKFDEGRNNF-E--------G----EVTKENLLDFIKH----------------NQLPLVIEFTEQTAPKIFGGE 134 (361)
T ss_dssp EEEEEESSTTSEEEC-C--------S----CCCHHHHHHHHHH----------------HSSCSEEECSTTTHHHHHSCS
T ss_pred eEEEEEecCCCcccc-C--------C----cCCHHHHHHHHHH----------------cCCCcceecCcccHHHHhcCC
Confidence 8888854 333322 1 1 3466666665543 23344444444433322 223
Q ss_pred CcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccC
Q 008336 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (569)
Q Consensus 197 gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~ 276 (569)
.+.++++|+++||++|..+.+.+.+++++++++ +.|+.+|.+.. ..+.++++|||+
T Consensus 135 ~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~-----i~f~~vd~~~~-------------------~~~~~~~~fgi~ 190 (361)
T 3uem_A 135 IKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK-----ILFIFIDSDHT-------------------DNQRILEFFGLK 190 (361)
T ss_dssp CCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT-----CEEEEECTTSG-------------------GGHHHHHHTTCC
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHHHHHHccCc-----eEEEEecCChH-------------------HHHHHHHHcCCC
Confidence 457889999999999999999999999999865 56666665421 157889999998
Q ss_pred C--CceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCC-cc-ceecCCCCceec
Q 008336 277 T--LPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGD-LD-FVVGKNGGKVPV 352 (569)
Q Consensus 277 ~--~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-f~~~~~g~~v~l 352 (569)
. +|++++++.++.. ..|......++.+.+.++......+...+.+++...+.. .+ -+...+++.+..
T Consensus 191 ~~~~P~~~~~~~~~~~---------~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~ 261 (361)
T 3uem_A 191 KEECPAVRLITLEEEM---------TKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFED 261 (361)
T ss_dssp TTTCSEEEEEECC--C---------CEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEECTTTHHH
T ss_pred ccCCccEEEEEcCCcc---------cccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcccccCCcEEeecCchhh
Confidence 7 9999999864321 112212236789999999999888877777776555432 11 122333433322
Q ss_pred ccC-CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 353 SDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 353 ~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
..+ .+|+++|+|||+||++|+++.|.|.+++++++++ .++.++.|+.+.+. ++
T Consensus 262 ~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~-~~v~~~~vd~~~~~-------------------------~~ 315 (361)
T 3uem_A 262 VAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDH-ENIVIAKMDSTANE-------------------------VE 315 (361)
T ss_dssp HHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTC-SSEEEEEEETTTCB-------------------------CS
T ss_pred hcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccC-CcEEEEEEECCccc-------------------------hh
Confidence 212 4899999999999999999999999999999864 24555555544331 56
Q ss_pred hcCCCCccEEEEECCC-CcEEE
Q 008336 432 KFKVSGIPMLVAIGPS-GRTIT 452 (569)
Q Consensus 432 ~~~v~~~Pt~~lid~~-G~i~~ 452 (569)
.|+|+++||+++++++ |+.+.
T Consensus 316 ~~~v~~~Pt~~~~~~~~~~~~~ 337 (361)
T 3uem_A 316 AVKVHSFPTLKFFPASADRTVI 337 (361)
T ss_dssp SCCCCSSSEEEEECSSSSCCCE
T ss_pred hcCCcccCeEEEEECCCCccee
Confidence 7999999999999655 44333
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=195.92 Aligned_cols=214 Identities=19% Similarity=0.296 Sum_probs=150.6
Q ss_pred ecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccC
Q 008336 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101 (569)
Q Consensus 24 ~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 101 (569)
..++++.+.....+|+ ++|+|||+||++|+.++|.|.+++++++..+ ++.++.|+++.+.
T Consensus 18 ~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~------------------ 79 (241)
T 3idv_A 18 LVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSAS------------------ 79 (241)
T ss_dssp EEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCH------------------
T ss_pred EEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCH------------------
Confidence 3456665655555788 9999999999999999999999999998653 4889999988664
Q ss_pred CchhHHHHHHhcCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCce
Q 008336 102 DSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDF 181 (569)
Q Consensus 102 ~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~ 181 (569)
.+++.|+|.++|++++++ +|+++...| ..+.+.+.+++..... .. + ......
T Consensus 80 ------~l~~~~~v~~~Pt~~~~~-~g~~~~~~g------------~~~~~~l~~~i~~~~~----~~---~--~~~~~~ 131 (241)
T 3idv_A 80 ------VLASRFDVSGYPTIKILK-KGQAVDYEG------------SRTQEEIVAKVREVSQ----PD---W--TPPPEV 131 (241)
T ss_dssp ------HHHHHTTCCSSSEEEEEE-TTEEEECCS------------CSCHHHHHHHHHHHHS----TT---C--CCCCCS
T ss_pred ------HHHHhcCCCcCCEEEEEc-CCCcccccC------------cccHHHHHHHHhhccC----cc---c--cccccc
Confidence 489999999999999995 676654322 3355566655543211 00 0 011112
Q ss_pred eecCCCceeeeccccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccC
Q 008336 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPF 261 (569)
Q Consensus 182 ~~~~~~~~~~~~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~ 261 (569)
+...+++.+......++.++++|+++||++|+.+.|.+.+++..++.++..+.++.++.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~------------------- 192 (241)
T 3idv_A 132 TLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA------------------- 192 (241)
T ss_dssp SEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTT-------------------
T ss_pred ceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCC-------------------
Confidence 2333444444333467899999999999999999999999999998765555556565554
Q ss_pred CchhHHHHHhhcccCCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHH
Q 008336 262 KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAE 319 (569)
Q Consensus 262 ~d~~~~~l~~~f~v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 319 (569)
...+++.|+|.++||++++.. |+.+.. .| +.+.+.+.++..
T Consensus 193 ----~~~l~~~~~v~~~Pt~~~~~~-g~~~~~--------~g----~~~~~~l~~~l~ 233 (241)
T 3idv_A 193 ----ETDLAKRFDVSGYPTLKIFRK-GRPYDY--------NG----PREKYGIVDYMI 233 (241)
T ss_dssp ----CHHHHHHTTCCSSSEEEEEET-TEEEEC--------CS----CCSHHHHHHHHH
T ss_pred ----CHHHHHHcCCcccCEEEEEEC-CeEEEe--------cC----CCCHHHHHHHHH
Confidence 347889999999999999974 443211 11 356677766665
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.90 E-value=9.6e-23 Score=196.81 Aligned_cols=203 Identities=20% Similarity=0.318 Sum_probs=146.2
Q ss_pred eecCCCceeeeccccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccC
Q 008336 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPF 261 (569)
Q Consensus 182 ~~~~~~~~~~~~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~ 261 (569)
++..+++.+.....+++.++++|+++||++|+.+.|.+.++++.+++.+..+.++.++.+.
T Consensus 17 v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~------------------- 77 (241)
T 3idv_A 17 VLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS------------------- 77 (241)
T ss_dssp EEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTT-------------------
T ss_pred cEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccC-------------------
Confidence 4444555555545678999999999999999999999999999998766555555555543
Q ss_pred CchhHHHHHhhcccCCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCccc
Q 008336 262 KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDF 341 (569)
Q Consensus 262 ~d~~~~~l~~~f~v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f 341 (569)
...+++.|+|.++||+++++. |+.+.. .| ..+.+.+.++........ ....+..
T Consensus 78 ----~~~l~~~~~v~~~Pt~~~~~~-g~~~~~--------~g----~~~~~~l~~~i~~~~~~~---------~~~~~~~ 131 (241)
T 3idv_A 78 ----ASVLASRFDVSGYPTIKILKK-GQAVDY--------EG----SRTQEEIVAKVREVSQPD---------WTPPPEV 131 (241)
T ss_dssp ----CHHHHHHTTCCSSSEEEEEET-TEEEEC--------CS----CSCHHHHHHHHHHHHSTT---------CCCCCCS
T ss_pred ----CHHHHHhcCCCcCCEEEEEcC-CCcccc--------cC----cccHHHHHHHHhhccCcc---------ccccccc
Confidence 357889999999999999964 443211 11 346667766665332211 1112233
Q ss_pred eecCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCccccc
Q 008336 342 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPF 421 (569)
Q Consensus 342 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~ 421 (569)
+...+.+.+...-..+++++|+||++||++|+.+.|.|.+++++++++..++.++.|+++..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~----------------- 194 (241)
T 3idv_A 132 TLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAET----------------- 194 (241)
T ss_dssp SEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCH-----------------
T ss_pred ceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCH-----------------
Confidence 333333333222223789999999999999999999999999999876556888888888664
Q ss_pred CchhhHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 422 GDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 422 ~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
++++.|+|+++||+++++ +|+.+..
T Consensus 195 ------~l~~~~~v~~~Pt~~~~~-~g~~~~~ 219 (241)
T 3idv_A 195 ------DLAKRFDVSGYPTLKIFR-KGRPYDY 219 (241)
T ss_dssp ------HHHHHTTCCSSSEEEEEE-TTEEEEC
T ss_pred ------HHHHHcCCcccCEEEEEE-CCeEEEe
Confidence 489999999999999995 6776653
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=177.26 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=109.3
Q ss_pred cccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHH---HHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 12 QSLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAE---VYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 12 ~~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~---~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
...+|.++|+| +.+.+|+.+++++++|| +||+|||+||++|+.++|.|.+ +++++++.+ +.|++|+.|.+.+.+
T Consensus 4 ~~~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~-~~vi~i~~d~~~~~~ 82 (142)
T 3eur_A 4 KNRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK-LKVLSIYPDEELDEW 82 (142)
T ss_dssp TTCTTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTS-EEEEEEECSSCHHHH
T ss_pred hhcCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCC-eEEEEEEcCCCHHHH
Confidence 45789999999 56789999999999999 9999999999999999999999 999998764 999999999999999
Q ss_pred HHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 87 KGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
++++++++..++...+......+.+.|++.++|+++|+|++|+|+.+
T Consensus 83 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 129 (142)
T 3eur_A 83 KKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLK 129 (142)
T ss_dssp HHHGGGSCTTSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEE
T ss_pred HHHHHhcccccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEec
Confidence 99999999877766666554457899999999999999999999875
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=173.33 Aligned_cols=135 Identities=35% Similarity=0.698 Sum_probs=116.0
Q ss_pred ccCccCC-c-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHH
Q 008336 15 LSSSARD-F-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (569)
Q Consensus 15 ~g~~~pd-f-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~ 91 (569)
+|+.+|+ | +.+.+|+.+++++++|| +||+||++||++|+.++|.|.+++++++++.++.|++|++|.+.+.+++|++
T Consensus 3 ~~~~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 82 (144)
T 1i5g_A 3 LKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYA 82 (144)
T ss_dssp TTTSCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHT
T ss_pred hhhhCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHH
Confidence 6789999 8 66789999999999999 9999999999999999999999999998533699999999999999999999
Q ss_pred hCCCcccccCCchhHHHHHHhcCCCCccEEEEEC-CCCcEEEcCCcceeecc-cCCCCCc
Q 008336 92 KMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLSDGGVEIIREY-GVEGYPF 149 (569)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid-~~G~i~~~~~~~~~~~~-~~~~~~~ 149 (569)
++++..+++...+....+.+.|++.++|+++|+| ++|+++.+.+...+... ....+||
T Consensus 83 ~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w 142 (144)
T 1i5g_A 83 KMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPW 142 (144)
T ss_dssp TCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred hCCccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhhCcccccCCC
Confidence 9998877777545556899999999999999999 99999998766554332 2334444
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=174.19 Aligned_cols=141 Identities=19% Similarity=0.339 Sum_probs=119.8
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
..|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++++++ ++.|++|++|.+.+.+++++++++
T Consensus 8 ~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~~~~~~~~~~~ 85 (152)
T 2lrn_A 8 VAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK--GFTIYGVSTDRREEDWKKAIEEDK 85 (152)
T ss_dssp ECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTT--TEEEEEEECCSCHHHHHHHHHHHT
T ss_pred cCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccC--CeEEEEEEccCCHHHHHHHHHHhC
Confidence 3588988 9999999999999999999999999999999999999999999865 699999999998899999998776
Q ss_pred CcccccCchh---hHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCccc
Q 008336 416 WLALPFGDAR---KASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENV 492 (569)
Q Consensus 416 ~~~~~~~~d~---~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~~~ 492 (569)
+.+|...|. ...+++.|+|.++|+++|||++|+++.+.. .. ++|.+.|+++++...+..
T Consensus 86 -~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~--------------~~---~~l~~~l~~l~~~~~~~~ 147 (152)
T 2lrn_A 86 -SYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKEL--------------RG---DDLYNTVEKFVNGAKEGH 147 (152)
T ss_dssp -CCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEECC--------------CT---THHHHHHHHHHTSSSSCC
T ss_pred -CCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEeeC--------------CH---HHHHHHHHHHHhhccccc
Confidence 567777776 688999999999999999999999999841 11 457777888877666555
Q ss_pred ccccc
Q 008336 493 KHALH 497 (569)
Q Consensus 493 ~~~~~ 497 (569)
.|..|
T Consensus 148 ~~~~~ 152 (152)
T 2lrn_A 148 HHHHH 152 (152)
T ss_dssp SSSCC
T ss_pred cccCC
Confidence 55443
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=171.85 Aligned_cols=132 Identities=42% Similarity=0.752 Sum_probs=116.2
Q ss_pred CCcc-cee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 337 GDLD-FVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 337 ~~~~-f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
..|+ |.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ .++.|++|++|.+.+.+++|++++
T Consensus 6 ~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~ 84 (144)
T 1i5g_A 6 FFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAEDFKDYYAKM 84 (144)
T ss_dssp SCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTC
T ss_pred hCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CCEEEEEEeCCCCHHHHHHHHHhC
Confidence 4577 877 9999999999999999999999999999999999999999999852 269999999999999999999999
Q ss_pred CCcccccCc-hhhHHHHHhcCCCCccEEEEEC-CCCcEEEccchhhHhhcC-CCCCCC
Q 008336 415 PWLALPFGD-ARKASLSRKFKVSGIPMLVAIG-PSGRTITKEARDMIAVHG-AEAYPF 469 (569)
Q Consensus 415 ~~~~~~~~~-d~~~~l~~~~~v~~~Pt~~lid-~~G~i~~~~~~~~~~~~g-~~~~p~ 469 (569)
+|..+|+.. +....+++.|+|.++|+++||| ++|+++.++++..+.... ...|||
T Consensus 85 ~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w 142 (144)
T 1i5g_A 85 PWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPW 142 (144)
T ss_dssp SSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred CccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhhCcccccCCC
Confidence 999999886 6678899999999999999999 999999998877665443 334454
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-22 Score=180.81 Aligned_cols=137 Identities=34% Similarity=0.703 Sum_probs=119.7
Q ss_pred ccccCccCCc--eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 13 SLLSSSARDF--LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 13 ~~~g~~~pdf--~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
..+|.++|+| +.+.+| .+++++++|| +||+|||+||++|+.++|.|.++++++++..++.|++|++|.+.+.+++|
T Consensus 22 ~~vG~~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~ 100 (165)
T 3s9f_A 22 SGVAKHLGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAY 100 (165)
T ss_dssp CHHHHHHHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHH
T ss_pred hhhcccCCcceeeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHH
Confidence 3579999999 556889 9999999999 99999999999999999999999999987446999999999999999999
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCC-CcEEEcCCcce-eecccCCCCCcc
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN-GKVLSDGGVEI-IREYGVEGYPFT 150 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~-G~i~~~~~~~~-~~~~~~~~~~~~ 150 (569)
+++++|..+++...+....+++.|+|.++|+++|||++ |+|+.+.+... ..+.....+||.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~~~d~~~~~fpw~ 163 (165)
T 3s9f_A 101 YAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWR 163 (165)
T ss_dssp HTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred HHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHHhhCcccccCCCC
Confidence 99999988888776666789999999999999999998 99999877543 344555566765
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=171.16 Aligned_cols=118 Identities=21% Similarity=0.366 Sum_probs=105.1
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHH---HHHHhcCCCCEEEEEEeCCCCHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAE---VYNELSRQGDFEVIFVSGDEDDEAFKG 88 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~---~~~~~~~~g~~~vv~v~~d~~~~~~~~ 88 (569)
.+|.++|+| +.+.+|+.+++++++|| +||+||++||++|+.++|.|.+ +++++++.+ +.|++|++|.+.+.+++
T Consensus 2 ~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~-~~~v~v~~d~~~~~~~~ 80 (142)
T 3ewl_A 2 NAGMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT-LRVLAIYPDENREEWAT 80 (142)
T ss_dssp CTTSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTS-EEEEEEECSSCHHHHHH
T ss_pred CCCCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCC-eEEEEEEecCCHHHHHH
Confidence 579999999 56789999999999999 9999999999999999999998 999998764 99999999999999999
Q ss_pred HHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 89 YFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
|++++++.+..+.+........+.|++.++|+++|+|++|+|+.
T Consensus 81 ~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~ 124 (142)
T 3ewl_A 81 KAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVIL 124 (142)
T ss_dssp HHTTSCTTCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEE
T ss_pred HHHHcCCCcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEe
Confidence 99999987777776665322234899999999999999999987
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=176.37 Aligned_cols=132 Identities=32% Similarity=0.772 Sum_probs=115.1
Q ss_pred Cccc-ee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 338 DLDF-VV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 338 ~~~f-~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
.|+| .+ +.+| .+++++++||++||+||++||++|++++|.|.+++++++++ .++.|++|++|.+.+.+++++++++
T Consensus 28 ~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~v~vv~v~~d~~~~~~~~~~~~~~ 105 (165)
T 3s9f_A 28 LGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDS-KNFEIILASWDEEEDDFNAYYAKMP 105 (165)
T ss_dssp HHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHHTTCS
T ss_pred CCcceeeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccC-CCeEEEEEecCCCHHHHHHHHHhCC
Confidence 3677 56 8899 99999999999999999999999999999999999999862 2699999999999999999999999
Q ss_pred CcccccCchhh-HHHHHhcCCCCccEEEEECCC-CcEEEccchhhH-hhcCCCCCCCCH
Q 008336 416 WLALPFGDARK-ASLSRKFKVSGIPMLVAIGPS-GRTITKEARDMI-AVHGAEAYPFTE 471 (569)
Q Consensus 416 ~~~~~~~~d~~-~~l~~~~~v~~~Pt~~lid~~-G~i~~~~~~~~~-~~~g~~~~p~~~ 471 (569)
|..+|+..+.. ..+++.|+|.++|+++|||++ |+|+.++++..+ .......|||.+
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~~~d~~~~~fpw~~ 164 (165)
T 3s9f_A 106 WLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWRD 164 (165)
T ss_dssp SEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCCC
T ss_pred CcccccCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHHhhCcccccCCCCC
Confidence 99999887544 889999999999999999998 999999887654 334455577653
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=170.49 Aligned_cols=119 Identities=17% Similarity=0.269 Sum_probs=105.6
Q ss_pred hccCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHH---HHHHHhhcCCCeEEEEEeCCCChhHHHH
Q 008336 334 LVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLID---AYKKIKERNESLEVVFISSDRDQTSFDE 409 (569)
Q Consensus 334 ~~~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~---l~~~~~~~~~~~~vv~is~d~~~~~~~~ 409 (569)
.....|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+ ++++++++ ++.|++|+.|.+.+.+++
T Consensus 7 ~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~--~~~vi~i~~d~~~~~~~~ 84 (142)
T 3eur_A 7 LGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAK--KLKVLSIYPDEELDEWKK 84 (142)
T ss_dssp TTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTT--SEEEEEEECSSCHHHHHH
T ss_pred CCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccC--CeEEEEEEcCCCHHHHHH
Confidence 3455799988 99999999999999999999999999999999999999 99999865 799999999999999999
Q ss_pred HHhcCCCcccccCchhhH--HHHHhcCCCCccEEEEECCCCcEEEccc
Q 008336 410 FFKGMPWLALPFGDARKA--SLSRKFKVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 410 ~~~~~~~~~~~~~~d~~~--~l~~~~~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
++++++ +.++...|... .+++.|+|.++|+++|||++|+|+.++.
T Consensus 85 ~~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 131 (142)
T 3eur_A 85 HRNDFA-KEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDA 131 (142)
T ss_dssp HGGGSC-TTSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEEE
T ss_pred HHHhcc-cccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecCC
Confidence 999988 45666655544 3788999999999999999999999853
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=169.78 Aligned_cols=116 Identities=19% Similarity=0.312 Sum_probs=106.0
Q ss_pred ccCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHH---HHHHHhhcCCCeEEEEEeCCCChhHHHHH
Q 008336 335 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLID---AYKKIKERNESLEVVFISSDRDQTSFDEF 410 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~---l~~~~~~~~~~~~vv~is~d~~~~~~~~~ 410 (569)
....|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+ ++++++++ ++.|++|++|.+.+.++++
T Consensus 4 G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~--~~~~v~v~~d~~~~~~~~~ 81 (142)
T 3ewl_A 4 GMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG--TLRVLAIYPDENREEWATK 81 (142)
T ss_dssp TSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHT--SEEEEEEECSSCHHHHHHH
T ss_pred CCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccC--CeEEEEEEecCCHHHHHHH
Confidence 345689988 99999999999999999999999999999999999998 99999875 6999999999999999999
Q ss_pred HhcCCCcccccCchhhHHHHH--hcCCCCccEEEEECCCCcEEEc
Q 008336 411 FKGMPWLALPFGDARKASLSR--KFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 411 ~~~~~~~~~~~~~d~~~~l~~--~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
+++++ +.+|...|....+.. .|+|.++|+++|||++|+|+.+
T Consensus 82 ~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 125 (142)
T 3ewl_A 82 AVYMP-QGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILK 125 (142)
T ss_dssp HTTSC-TTCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEEC
T ss_pred HHHcC-CCcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEec
Confidence 99988 578888888877776 8999999999999999999986
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-21 Score=169.40 Aligned_cols=133 Identities=38% Similarity=0.764 Sum_probs=115.3
Q ss_pred cCCcc-cee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLD-FVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~-f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+ |.+ +.+| .+++++++||++||+||++||++|+.++|.|++++++++++ .++.|++|++|.+.+.+++|+++
T Consensus 6 ~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~ 83 (146)
T 1o8x_A 6 KYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES-KNFEVVFCTWDEEEDGFAGYFAK 83 (146)
T ss_dssp GTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHHTT
T ss_pred hhCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhc-CCeEEEEEeCCCCHHHHHHHHHH
Confidence 44577 877 9999 99999999999999999999999999999999999999842 26999999999999999999999
Q ss_pred CCCcccccCc-hhhHHHHHhcCCCCccEEEEEC-CCCcEEEccchhhHhhcC-CCCCCCC
Q 008336 414 MPWLALPFGD-ARKASLSRKFKVSGIPMLVAIG-PSGRTITKEARDMIAVHG-AEAYPFT 470 (569)
Q Consensus 414 ~~~~~~~~~~-d~~~~l~~~~~v~~~Pt~~lid-~~G~i~~~~~~~~~~~~g-~~~~p~~ 470 (569)
++|..+|+.. +....+++.|+|.++|+++||| ++|+++.++++..+.... ...+||.
T Consensus 84 ~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~ 143 (146)
T 1o8x_A 84 MPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWK 143 (146)
T ss_dssp CSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCC
T ss_pred CCceeeccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHHhhCCccccCCCC
Confidence 9999999886 6678899999999999999999 999999998776654332 3345554
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-21 Score=172.32 Aligned_cols=119 Identities=13% Similarity=0.133 Sum_probs=101.4
Q ss_pred cccCccCCceecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHh
Q 008336 14 LLSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92 (569)
Q Consensus 14 ~~g~~~pdf~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~ 92 (569)
.+|.++|+|.++.+|+.+++++++|| +||+|||+||++|+.++|.|.+++++|++++ +.|++|++|.+.+.+++++++
T Consensus 8 ~~G~~~P~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~-~~vv~vs~d~~~~~~~~~~~~ 86 (143)
T 4fo5_A 8 NPGDLAPRIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK-IAMCSISMDEKESIFTETVKI 86 (143)
T ss_dssp STTSBCCCCCC-----CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTT-EEEEEEECCSCHHHHHHHHHH
T ss_pred CCcccCCceEEcCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCC-EEEEEEEccCCHHHHHHHHHH
Confidence 57999999955889999999999999 9999999999999999999999999998774 999999999999999999999
Q ss_pred CCCcc-cccCCchh-HHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 93 MPWLA-VPFSDSET-RDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 93 ~~~~~-~~~~~~~~-~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
++..+ ..+.+... ...+.+.|++.++|+++|||++|+|+.+
T Consensus 87 ~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 129 (143)
T 4fo5_A 87 DKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAA 129 (143)
T ss_dssp HTCCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEE
T ss_pred hCCCCceeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEc
Confidence 88877 44444322 3578999999999999999999999875
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=169.59 Aligned_cols=125 Identities=43% Similarity=0.815 Sum_probs=110.9
Q ss_pred cccCccCC-c-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARD-F-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pd-f-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|+.+|+ | +.+.+| .+++++++|| ++|+|||+||++|+.++|.|.++++++++..++.|++|++|.+.+.+++|+
T Consensus 3 ~~~~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 81 (146)
T 1o8x_A 3 GLDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYF 81 (146)
T ss_dssp CGGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHH
T ss_pred chHhhCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHH
Confidence 46889999 8 667899 9999999999 999999999999999999999999999853369999999999999999999
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCCCccEEEEEC-CCCcEEEcCCccee
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLSDGGVEII 139 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid-~~G~i~~~~~~~~~ 139 (569)
+++++..+++...+....+++.|+|.++|+++|+| ++|+++.+.+...+
T Consensus 82 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~ 131 (146)
T 1o8x_A 82 AKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131 (146)
T ss_dssp TTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred HHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHH
Confidence 99998777776545556899999999999999999 89999998765544
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-21 Score=167.82 Aligned_cols=126 Identities=40% Similarity=0.786 Sum_probs=111.7
Q ss_pred ccccCccCCc--eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 13 SLLSSSARDF--LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 13 ~~~g~~~pdf--~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
+-+|..+|+| +.+.+| .+++++++|| +||+||++||++|+.++|.|.+++++++...++.|++|++|.+.+.+++|
T Consensus 2 ~~~g~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~ 80 (144)
T 1o73_A 2 SGLAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDY 80 (144)
T ss_dssp CGGGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHH
T ss_pred cchhhhCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHH
Confidence 3579999997 556899 9999999999 99999999999999999999999999984336999999999999999999
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCCCCccEEEEEC-CCCcEEEcCCccee
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLSDGGVEII 139 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid-~~G~i~~~~~~~~~ 139 (569)
++++++..+++...+....+.+.|++.++|+++++| ++|+++.+.+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~ 131 (144)
T 1o73_A 81 YGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRV 131 (144)
T ss_dssp HTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred HHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHH
Confidence 999998888877655566899999999999999999 89999998766544
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-21 Score=170.35 Aligned_cols=116 Identities=21% Similarity=0.168 Sum_probs=97.0
Q ss_pred cCCccceecCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 336 SGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 336 ~~~~~f~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
...|+|.++.+|+.+++++++||++||+||++||++|+.++|.|.+++++++++ ++.|++|++|.+.+.+++++++++
T Consensus 11 ~~~P~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~ 88 (143)
T 4fo5_A 11 DLAPRIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD--KIAMCSISMDEKESIFTETVKIDK 88 (143)
T ss_dssp SBCCCCCC-----CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT--TEEEEEEECCSCHHHHHHHHHHHT
T ss_pred ccCCceEEcCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC--CEEEEEEEccCCHHHHHHHHHHhC
Confidence 345889888899999999999999999999999999999999999999999865 699999999999899999998766
Q ss_pred Cccc-ccCch---hhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 416 WLAL-PFGDA---RKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 416 ~~~~-~~~~d---~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+.+ +...| ....+++.|+|.++|+++|||++|+|+.++
T Consensus 89 -~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 130 (143)
T 4fo5_A 89 -LDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAAN 130 (143)
T ss_dssp -CCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEES
T ss_pred -CCCceeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEcc
Confidence 333 33333 346799999999999999999999999985
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=165.49 Aligned_cols=133 Identities=38% Similarity=0.764 Sum_probs=114.6
Q ss_pred ccCCccc-ee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHh
Q 008336 335 VSGDLDF-VV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 412 (569)
Q Consensus 335 ~~~~~~f-~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 412 (569)
....|+| .+ +.+| .+++++++||++||+||++||++|+.++|.|.++++++++. .++.|++|++|.+.+.++++++
T Consensus 5 g~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~vv~i~~d~~~~~~~~~~~ 82 (144)
T 1o73_A 5 AKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDYYG 82 (144)
T ss_dssp GGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHT
T ss_pred hhhCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccC-CCEEEEEEeCCCCHHHHHHHHH
Confidence 3446887 66 9999 99999999999999999999999999999999999999732 2699999999999899999999
Q ss_pred cCCCcccccCc-hhhHHHHHhcCCCCccEEEEEC-CCCcEEEccchhhHhhcC-CCCCCC
Q 008336 413 GMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIG-PSGRTITKEARDMIAVHG-AEAYPF 469 (569)
Q Consensus 413 ~~~~~~~~~~~-d~~~~l~~~~~v~~~Pt~~lid-~~G~i~~~~~~~~~~~~g-~~~~p~ 469 (569)
+++|..+|+.. +....+++.|+|.++|+++||| ++|+++.+.++..+.... ...|||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~W 142 (144)
T 1o73_A 83 KMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPW 142 (144)
T ss_dssp TCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred hCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHHhhCCCccCCCC
Confidence 99999999876 5677899999999999999999 899999998776654433 233444
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=168.00 Aligned_cols=140 Identities=24% Similarity=0.495 Sum_probs=116.6
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
..|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++++++ ++.|+.|++|.+.+.+++|+++++
T Consensus 5 ~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~v~~d~~~~~~~~~~~~~~ 82 (151)
T 2f9s_A 5 DAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ--GVEIVAVNVGESKIAVHNFMKSYG 82 (151)
T ss_dssp ECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCCHHHHHHHHHHHT
T ss_pred cCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEECCCCHHHHHHHHHHcC
Confidence 3588988 9999999999999999999999999999999999999999999875 699999999988899999999887
Q ss_pred CcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCcccc
Q 008336 416 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVK 493 (569)
Q Consensus 416 ~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~~~~ 493 (569)
+.+|+..|....+++.|+|.++|+++|||++|+++.+..+. . ..++|.+.|++++++......
T Consensus 83 -~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~-----------~---~~~~l~~~l~~ll~~~~~~~~ 145 (151)
T 2f9s_A 83 -VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGT-----------M---TESMIHDYMNLIKPGETSGLE 145 (151)
T ss_dssp -CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEESC-----------C---CHHHHHHHHHHHSCC------
T ss_pred -CCceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEEEeCC-----------C---CHHHHHHHHHHHHhhhhcccc
Confidence 56888888888999999999999999999999999874321 1 235567777777765554433
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=166.52 Aligned_cols=120 Identities=20% Similarity=0.325 Sum_probs=108.1
Q ss_pred cccCccCCc-eecCCCceeecC--CCCCc-EEEEEecCCCHh--hHhhHHHHHHHHHHh-cCCCCEEEEEEeCCCCHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLD--SLKGK-IGLYFSASWCGP--CQRFTPILAEVYNEL-SRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~--~~~gk-vlv~F~a~wC~~--C~~~~p~l~~~~~~~-~~~g~~~vv~v~~d~~~~~~ 86 (569)
.+|.++|+| +.+.+|+.++++ +++|| ++|+||++||++ |+.++|.|.+++++| ++++ +.+++|++|.+.+.+
T Consensus 6 ~~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~-~~~v~v~~d~~~~~~ 84 (150)
T 3fw2_A 6 EIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKY-IGMLGISLDVDKQQW 84 (150)
T ss_dssp STTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSS-EEEEEEECCSCHHHH
T ss_pred cCCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCC-eEEEEEEcCCCHHHH
Confidence 479999999 667899999999 99999 999999999999 999999999999999 6664 999999999999999
Q ss_pred HHHHHhCCCcccccCCchh-HHHHHHhcCCCCccEEEEECCCCcEEEcC
Q 008336 87 KGYFSKMPWLAVPFSDSET-RDKLDELFKVMGIPHLVILDENGKVLSDG 134 (569)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 134 (569)
++|+++++..+..+.+... ...+.+.|++.++|+++|||++|+|+...
T Consensus 85 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 133 (150)
T 3fw2_A 85 KDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKN 133 (150)
T ss_dssp HHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred HHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEcc
Confidence 9999999987777766532 35789999999999999999999999753
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=8e-21 Score=171.44 Aligned_cols=138 Identities=20% Similarity=0.237 Sum_probs=119.1
Q ss_pred cCCcccee-cCCCCceecccCCCCE-EEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHh
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKT-ILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 412 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~-vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 412 (569)
...|+|.+ +.+|+.+++++++||+ +||+|| ++||++|+.++|.|.+++++++++ ++.||+|++| +.+.+++|++
T Consensus 6 ~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~vs~d-~~~~~~~~~~ 82 (161)
T 3drn_A 6 DKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY--DVVVIGVSSD-DINSHKRFKE 82 (161)
T ss_dssp SBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTT--CEEEEEEESC-CHHHHHHHHH
T ss_pred CcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHc--CCEEEEEeCC-CHHHHHHHHH
Confidence 34689988 9999999999999997 999999 999999999999999999999875 6999999998 5789999999
Q ss_pred cCCCcccccCchhhHHHHHhcCCCC----ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcC
Q 008336 413 GMPWLALPFGDARKASLSRKFKVSG----IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 487 (569)
Q Consensus 413 ~~~~~~~~~~~d~~~~l~~~~~v~~----~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~ 487 (569)
+++ +.+|++.|....+++.|++.+ +|+++|||++|+|+.+..+. ......++++.+.|+++..+
T Consensus 83 ~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~g~----------~~~~~~~~~il~~l~~l~~~ 150 (161)
T 3drn_A 83 KYK-LPFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIYNSQ----------MNPANHVNEALKALKQIKEE 150 (161)
T ss_dssp HTT-CCSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEECS----------SCTTHHHHHHHHHHHHHHHH
T ss_pred HhC-CCceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEEecC----------CCCCcCHHHHHHHHHHhhhh
Confidence 988 568888888899999999999 99999999999999885431 02346677787887776543
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=166.66 Aligned_cols=116 Identities=21% Similarity=0.322 Sum_probs=104.5
Q ss_pred cCCcccee-cCCCCceecc--cCCCCEEEEEEecCCChh--HHhhhHHHHHHHHHH-hhcCCCeEEEEEeCCCChhHHHH
Q 008336 336 SGDLDFVV-GKNGGKVPVS--DLAGKTILLYFSAHWCPP--CRAFLPKLIDAYKKI-KERNESLEVVFISSDRDQTSFDE 409 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~--~~~gk~vll~F~a~wC~~--C~~~~~~l~~l~~~~-~~~~~~~~vv~is~d~~~~~~~~ 409 (569)
...|+|.+ +.+|+.++++ +++||++||+||++||++ |+.++|.|.++++++ +++ ++.|++|++|.+++.+++
T Consensus 9 ~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~--~~~~v~v~~d~~~~~~~~ 86 (150)
T 3fw2_A 9 KYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK--YIGMLGISLDVDKQQWKD 86 (150)
T ss_dssp SBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCS--SEEEEEEECCSCHHHHHH
T ss_pred CcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCC--CeEEEEEEcCCCHHHHHH
Confidence 34689988 9999999999 999999999999999999 999999999999999 554 699999999999899999
Q ss_pred HHhcCCCcccccCchh---hHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 410 FFKGMPWLALPFGDAR---KASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 410 ~~~~~~~~~~~~~~d~---~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
|+++++ +.+|.+.|. ...+++.|+|.++|+++|||++|+|+.+.
T Consensus 87 ~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 133 (150)
T 3fw2_A 87 AIKRDT-LDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKN 133 (150)
T ss_dssp HHHHTT-CCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred HHHHhC-CCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEcc
Confidence 999887 466666554 67899999999999999999999999984
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=165.16 Aligned_cols=137 Identities=25% Similarity=0.437 Sum_probs=118.3
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
..|+|.+ + +|+.+++++++||++||+||++||++|+.++|.|.+++++++++ ++.|++|++|.+.+.+.+++++++
T Consensus 8 ~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~ 84 (152)
T 3gl3_A 8 KAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK--GFQVVAVNLDAKTGDAMKFLAQVP 84 (152)
T ss_dssp BCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG--TEEEEEEECCSSHHHHHHHHHHSC
T ss_pred cCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEECCCCHHHHHHHHHHcC
Confidence 4589988 7 99999999999999999999999999999999999999999876 699999999999899999999988
Q ss_pred CcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 008336 416 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 489 (569)
Q Consensus 416 ~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~ 489 (569)
+.+++..|....+++.|++.++|+++|||++|+++.+..+ ....+.++|.+.|++++.+.+
T Consensus 85 -~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g------------~~~~~~~~l~~~i~~~~~~~~ 145 (152)
T 3gl3_A 85 -AEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVG------------FRPADKEALEQQILAALGGNE 145 (152)
T ss_dssp -CCSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEEES------------CCTTTHHHHHHHHHHHTC---
T ss_pred -CCCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEEcc------------CCCcCHHHHHHHHHHHHcccc
Confidence 5788888888899999999999999999999999998432 233455677777877765544
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=167.28 Aligned_cols=145 Identities=24% Similarity=0.446 Sum_probs=115.0
Q ss_pred ccCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC-hhHHHHHHh
Q 008336 335 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD-QTSFDEFFK 412 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~-~~~~~~~~~ 412 (569)
....|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.++++++++. ++.|++|++|.+ .+.+++|++
T Consensus 5 G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~ 82 (154)
T 3kcm_A 5 ENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGK--PFRMLCVSIDEGGKVAVEEFFR 82 (154)
T ss_dssp TSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTS--SEEEEEEECCTTHHHHHHHHHH
T ss_pred CCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEEcCCcchHHHHHHHH
Confidence 345689988 9999999999999999999999999999999999999999999864 699999999987 788899998
Q ss_pred cCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCccc
Q 008336 413 GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENV 492 (569)
Q Consensus 413 ~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~~~ 492 (569)
.++ +.+|+..|....+++.|++.++|+++|||++|+++.+..+. .....+++.+.|+++....+...
T Consensus 83 ~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~------------~~~~~~~l~~~l~~l~~~~~~~~ 149 (154)
T 3kcm_A 83 KTG-FTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGA------------MEWDHPEVIAFLNNELSKAREGH 149 (154)
T ss_dssp HHC-CCCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEEEESC------------CCTTSHHHHHHHHTC--------
T ss_pred HcC-CCeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEEEcCC------------CccccHHHHHHHHHHHHHhhhcc
Confidence 887 56888888888999999999999999999999999984321 11123456666777666555444
Q ss_pred cc
Q 008336 493 KH 494 (569)
Q Consensus 493 ~~ 494 (569)
++
T Consensus 150 ~~ 151 (154)
T 3kcm_A 150 HH 151 (154)
T ss_dssp --
T ss_pred cc
Confidence 33
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=167.24 Aligned_cols=135 Identities=16% Similarity=0.282 Sum_probs=112.4
Q ss_pred CCcccee-c--CCCCceecccCCCCEEEEEEecCCChhHHhh-hHHHHHHHHHHhhcCCCeEEEEEeCC------CChhH
Q 008336 337 GDLDFVV-G--KNGGKVPVSDLAGKTILLYFSAHWCPPCRAF-LPKLIDAYKKIKERNESLEVVFISSD------RDQTS 406 (569)
Q Consensus 337 ~~~~f~~-~--~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~vv~is~d------~~~~~ 406 (569)
..|+|.+ + .+|+.+++++++||++||+||++||++|+.+ +|.|.+++++++++ ++.|++|++| .+.+.
T Consensus 5 ~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~~~~ 82 (158)
T 3eyt_A 5 KAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED--KVAVLGLHTVFEHHEAMTPIS 82 (158)
T ss_dssp ECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT--TEEEEEEECCCSCGGGSCHHH
T ss_pred cCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcC--CEEEEEEEecccccccCCHHH
Confidence 3588987 6 4889999999999999999999999999996 99999999999865 6999999984 57789
Q ss_pred HHHHHhcCCCcccccCchhhH-----HHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHh
Q 008336 407 FDEFFKGMPWLALPFGDARKA-----SLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQY 481 (569)
Q Consensus 407 ~~~~~~~~~~~~~~~~~d~~~-----~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l 481 (569)
+++|+++++ +.+|+..|... .+++.|+|.++|+++|||++|+++.+..+. .. .++|.+.|
T Consensus 83 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----------~~---~~~l~~~i 147 (158)
T 3eyt_A 83 LKAFLHEYR-IKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGD-----------VS---ELLLGAEI 147 (158)
T ss_dssp HHHHHHHTT-CCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEEEESC-----------CC---HHHHHHHH
T ss_pred HHHHHHHcC-CCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEEEeCC-----------CC---HHHHHHHH
Confidence 999999887 56777777665 699999999999999999999999985321 22 24567777
Q ss_pred hhhhcCC
Q 008336 482 NEMAKGW 488 (569)
Q Consensus 482 ~~l~~~~ 488 (569)
++++++.
T Consensus 148 ~~ll~~~ 154 (158)
T 3eyt_A 148 ATLLGEA 154 (158)
T ss_dssp HHHHTSC
T ss_pred HHHhccC
Confidence 7777644
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=168.54 Aligned_cols=137 Identities=16% Similarity=0.247 Sum_probs=114.8
Q ss_pred ccCCcccee-c-CCCCceecccCCCCEEEEEEecCCChhHHhh-hHHHHHHHHHHhhcCCCeEEEEEeCC------CChh
Q 008336 335 VSGDLDFVV-G-KNGGKVPVSDLAGKTILLYFSAHWCPPCRAF-LPKLIDAYKKIKERNESLEVVFISSD------RDQT 405 (569)
Q Consensus 335 ~~~~~~f~~-~-~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~vv~is~d------~~~~ 405 (569)
....|+|.+ + .+|+.+++++++||++||+||++||++|+.+ +|.|.+++++++++ ++.|++|++| .+.+
T Consensus 6 g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~~~ 83 (160)
T 3lor_A 6 NAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES--QVQVIGLHSVFEHHDVMTPE 83 (160)
T ss_dssp TCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT--TEEEEEEECCCSCGGGSCHH
T ss_pred CCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC--CcEEEEEeccccccccCCHH
Confidence 445688877 6 7999999999999999999999999999995 99999999999865 6999999984 6788
Q ss_pred HHHHHHhcCCCcccccCchhhHH------HHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHH
Q 008336 406 SFDEFFKGMPWLALPFGDARKAS------LSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 479 (569)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~d~~~~------l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~ 479 (569)
.+++|+++++ +.+|+..|.... +++.|+|.++|+++|||++|+++.+..+. .. .++|.+
T Consensus 84 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----------~~---~~~l~~ 148 (160)
T 3lor_A 84 ALKVFIDEFG-IKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQ-----------VD---DFVLGL 148 (160)
T ss_dssp HHHHHHHHTT-CCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEEESC-----------CC---HHHHHH
T ss_pred HHHHHHHHcC-CCCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEEecCc-----------CC---HHHHHH
Confidence 9999999988 568877777766 99999999999999999999999984321 12 245677
Q ss_pred HhhhhhcCC
Q 008336 480 QYNEMAKGW 488 (569)
Q Consensus 480 ~l~~l~~~~ 488 (569)
.|++++++.
T Consensus 149 ~i~~ll~~~ 157 (160)
T 3lor_A 149 LLGSLLSET 157 (160)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHhcc
Confidence 777777643
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-20 Score=162.26 Aligned_cols=119 Identities=23% Similarity=0.381 Sum_probs=107.6
Q ss_pred cccCccCCc-eecCCCceeecC--CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHh-cCCCCEEEEEEeCCCCHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLD--SLKGK-IGLYFSASWCGPCQRFTPILAEVYNEL-SRQGDFEVIFVSGDEDDEAFKG 88 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~--~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~-~~~g~~~vv~v~~d~~~~~~~~ 88 (569)
.+|.++|+| +.+.+|+.++++ +++|| +||+||++||++|+.++|.|.++++++ .+.+ +.+++|++|.+.+.+++
T Consensus 6 ~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~-~~~v~v~~d~~~~~~~~ 84 (148)
T 3fkf_A 6 TVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKN-FAMLGISLDIDREAWET 84 (148)
T ss_dssp CTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTT-EEEEEEECCSCHHHHHH
T ss_pred cCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCC-eEEEEEECCCCHHHHHH
Confidence 579999999 667899999999 99999 999999999999999999999999999 6664 99999999999999999
Q ss_pred HHHhCCCcccccCCchh-HHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 89 YFSKMPWLAVPFSDSET-RDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
++++++..+..+.+... ...+++.|++.++|+++++|++|+++..
T Consensus 85 ~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 130 (148)
T 3fkf_A 85 AIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILAR 130 (148)
T ss_dssp HHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred HHHHcCCCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEe
Confidence 99999987777766532 4578999999999999999999999875
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=165.95 Aligned_cols=134 Identities=17% Similarity=0.259 Sum_probs=115.9
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++++++ ++.|++|++|.+.+.+++|++++
T Consensus 9 ~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~ 86 (148)
T 3hcz_A 9 KKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK--GIQVYAANIERKDEEWLKFIRSK 86 (148)
T ss_dssp SBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG--TEEEEEEECCSSSHHHHHHHHHH
T ss_pred CcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC--CEEEEEEEecCCHHHHHHHHHHc
Confidence 34689988 9999999999999999999999999999999999999999999876 69999999998888999999998
Q ss_pred CCcccccCchhhHH--HHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhh
Q 008336 415 PWLALPFGDARKAS--LSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 485 (569)
Q Consensus 415 ~~~~~~~~~d~~~~--l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~ 485 (569)
++..++...|.... +++.|++.++|+++|||++|+++.+.. ....++++.+.+.+++
T Consensus 87 ~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~--------------g~~~~~~~l~~l~~~l 145 (148)
T 3hcz_A 87 KIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRI--------------GYENLDDFLVQYEKSL 145 (148)
T ss_dssp TCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEESC--------------CGGGHHHHHHHHHHHH
T ss_pred CCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEecC--------------CHHHHHHHHHHHHHHh
Confidence 86558877777766 999999999999999999999999842 2245566666665554
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-20 Score=165.48 Aligned_cols=136 Identities=19% Similarity=0.319 Sum_probs=107.8
Q ss_pred CccceecCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCc
Q 008336 338 DLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 417 (569)
Q Consensus 338 ~~~f~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~ 417 (569)
+++|....+|+.+++++++||++||+||++||++|+.++|.|.+++++++++ ++.|++|++|. .+.+++|+++++ +
T Consensus 5 a~~~~~~~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~--~v~vv~v~~d~-~~~~~~~~~~~~-~ 80 (151)
T 3raz_A 5 ADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKG--SVDMVGIALDT-SDNIGNFLKQTP-V 80 (151)
T ss_dssp --CEEETTTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT--TEEEEEEESSC-HHHHHHHHHHSC-C
T ss_pred cchhhcccCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC--CeEEEEEECCC-hHHHHHHHHHcC-C
Confidence 3566656899999999999999999999999999999999999999999654 69999999984 578899999887 5
Q ss_pred ccccCch---hhHHHHHhcC--CCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCcc
Q 008336 418 ALPFGDA---RKASLSRKFK--VSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN 491 (569)
Q Consensus 418 ~~~~~~d---~~~~l~~~~~--v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~~ 491 (569)
.+|...+ ....+++.|+ +.++|+++|||++|+++.+..+. .. .++|.+.|+++.++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----------~~---~~~l~~~l~~l~~~~~~~ 145 (151)
T 3raz_A 81 SYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGE-----------VN---EKSLTDAVKLAHSKCREG 145 (151)
T ss_dssp SSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEECCSC-----------CC---HHHHHHHHHHHHTC----
T ss_pred CCceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEECCC-----------CC---HHHHHHHHHHHHHHhhcc
Confidence 6666543 4567899999 99999999999999999884321 22 355677777777665543
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=165.64 Aligned_cols=119 Identities=26% Similarity=0.420 Sum_probs=106.7
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~ 91 (569)
.+|.++|+| +.+.+|+.+++++++|| ++|+||++||++|+.++|.|.++++++++++ +.|++|++|.+.+.+++|++
T Consensus 4 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~-~~vv~v~~d~~~~~~~~~~~ 82 (152)
T 2lrn_A 4 ATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG-FTIYGVSTDRREEDWKKAIE 82 (152)
T ss_dssp CTTEECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTT-EEEEEEECCSCHHHHHHHHH
T ss_pred cCCCcCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCC-eEEEEEEccCCHHHHHHHHH
Confidence 479999999 56789999999999999 9999999999999999999999999998764 99999999999999999999
Q ss_pred hCCCcccccCCchh-HHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 92 KMPWLAVPFSDSET-RDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 92 ~~~~~~~~~~~~~~-~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+++..+..+.+... ...+.+.|++.++|+++|+|++|+++..
T Consensus 83 ~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 125 (152)
T 2lrn_A 83 EDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAK 125 (152)
T ss_dssp HHTCCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred HhCCCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEe
Confidence 98877666655432 3578999999999999999999999875
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-21 Score=172.57 Aligned_cols=136 Identities=23% Similarity=0.256 Sum_probs=108.9
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+|.+ +.+|++++|++++||+++|+|| ++||++|+.++|.|++++++++.. ++.+++||.| +++..++|.++
T Consensus 8 ~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~--~~~~v~vs~d-~~~~~~~~~~~ 84 (157)
T 4g2e_A 8 ELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV--NAVVLGISVD-PPFSNKAFKEH 84 (157)
T ss_dssp SBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGC--SSEEEEEESS-CHHHHHHHHHH
T ss_pred CCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhccccccccccc--CceEeeeccc-chhHHHHHHHH
Confidence 34699988 9999999999999999999999 999999999999999999999876 7999999998 45778899988
Q ss_pred CCCcccccCchhhHHHHHhcCCC-----------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhh
Q 008336 414 MPWLALPFGDARKASLSRKFKVS-----------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 482 (569)
Q Consensus 414 ~~~~~~~~~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~ 482 (569)
++ +.+|++.|.++++++.|||. ..|++||||++|+|++++.+.. +..+..++++++.|+
T Consensus 85 ~~-~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~---------~~~~~~~~eil~~l~ 154 (157)
T 4g2e_A 85 NK-LNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDD---------PTKEPPYDEIEKVVK 154 (157)
T ss_dssp TT-CCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESS---------TTCCCCHHHHHHHHH
T ss_pred cC-CcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCC---------CCCCCCHHHHHHHHH
Confidence 87 68999999999999999984 4689999999999998854321 233445677777776
Q ss_pred hh
Q 008336 483 EM 484 (569)
Q Consensus 483 ~l 484 (569)
.|
T Consensus 155 ~L 156 (157)
T 4g2e_A 155 SL 156 (157)
T ss_dssp HT
T ss_pred Hh
Confidence 55
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-20 Score=163.35 Aligned_cols=130 Identities=20% Similarity=0.376 Sum_probs=111.6
Q ss_pred CCcccee-cCCCCceecc--cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHH-hhcCCCeEEEEEeCCCChhHHHHHHh
Q 008336 337 GDLDFVV-GKNGGKVPVS--DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKI-KERNESLEVVFISSDRDQTSFDEFFK 412 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~--~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~-~~~~~~~~vv~is~d~~~~~~~~~~~ 412 (569)
..|+|.+ +.+|+.++++ +++||++||+||++||++|+.++|.|.++++++ +++ ++.|++|++|.+.+.++++++
T Consensus 10 ~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~ 87 (148)
T 3fkf_A 10 SAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNK--NFAMLGISLDIDREAWETAIK 87 (148)
T ss_dssp BCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCT--TEEEEEEECCSCHHHHHHHHH
T ss_pred cCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCC--CeEEEEEECCCCHHHHHHHHH
Confidence 4589988 9999999999 999999999999999999999999999999999 654 699999999999899999999
Q ss_pred cCCCcccccCchh---hHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhc
Q 008336 413 GMPWLALPFGDAR---KASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 486 (569)
Q Consensus 413 ~~~~~~~~~~~d~---~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~ 486 (569)
.++ +.+|...+. ...+++.|++.++|+++|||++|+++.+.. ..++|.+.|+++++
T Consensus 88 ~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-----------------~~~~l~~~l~~ll~ 146 (148)
T 3fkf_A 88 KDT-LSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDI-----------------QGEALTGKLKELLK 146 (148)
T ss_dssp HTT-CCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC-----------------CHHHHHHHHHHHC-
T ss_pred HcC-CCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEecC-----------------CHHHHHHHHHHHHc
Confidence 887 466666555 678999999999999999999999999842 23556666766654
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=164.73 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=101.4
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++++++ ++.|++|++|...+.++++...+
T Consensus 13 ~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~vv~i~~d~~~~~~~~~~~~~ 90 (152)
T 2lrt_A 13 ASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ--GFEIYQISLDGDEHFWKTSADNL 90 (152)
T ss_dssp TCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEECSCCHHHHHHHHTTC
T ss_pred CCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC--CeEEEEEEccCCHHHHHHHHhCC
Confidence 34689988 9999999999999999999999999999999999999999999876 69999999999988888888765
Q ss_pred CCcccccCchhhHH---HHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 415 PWLALPFGDARKAS---LSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 415 ~~~~~~~~~d~~~~---l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+ +|++.|.... +.+.|++.++|+++|||++|+|+.+.
T Consensus 91 ~---~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 130 (152)
T 2lrt_A 91 P---WVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARG 130 (152)
T ss_dssp S---SEEEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEET
T ss_pred C---ceEEECCCCcchHHHHHcCcccCceEEEECCCCeEEEec
Confidence 4 4555555554 99999999999999999999999984
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-20 Score=177.07 Aligned_cols=146 Identities=16% Similarity=0.230 Sum_probs=120.1
Q ss_pred cCCcccee-cCCCCceecccCCCC-EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGK-TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTS 406 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk-~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~ 406 (569)
...|+|.+ +.+|+.+++++++|| ++||+||++||++|+.++|.|++++++++++ ++.||+|++| .+.+.
T Consensus 36 ~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Vs~d~~~~~~~d~~~~ 113 (218)
T 3u5r_E 36 TRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQ--GLAVVAINSNDAQAFPEETLER 113 (218)
T ss_dssp CBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTT--TEEEEEEECSCTTTCGGGSHHH
T ss_pred CcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhC--CcEEEEEECCcccccccCCHHH
Confidence 34589988 999999999999999 5999999999999999999999999999875 6999999997 67788
Q ss_pred HHHHHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhc
Q 008336 407 FDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 486 (569)
Q Consensus 407 ~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~ 486 (569)
+++|+++++ +.+|++.|....+++.|+|.++|+++|||++|+|+++...+... .+ . ......++|.+.|+++++
T Consensus 114 ~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~~d~~~-~~-~---~~~~~~~~l~~~i~~ll~ 187 (218)
T 3u5r_E 114 VGAEVKAYG-YGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQFDDAR-PG-N---GKDVTGADLRAAVDAVLK 187 (218)
T ss_dssp HHHHHHHHT-CCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEECSSSCC-TT-S---CCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHhC-CCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEeccccccc-cc-c---ccccCHHHHHHHHHHHHc
Confidence 999999887 68898888888999999999999999999999999875322110 00 0 011223567778888887
Q ss_pred CCC
Q 008336 487 GWP 489 (569)
Q Consensus 487 ~~~ 489 (569)
+.+
T Consensus 188 ~~~ 190 (218)
T 3u5r_E 188 GKD 190 (218)
T ss_dssp TCC
T ss_pred CCC
Confidence 655
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-20 Score=164.88 Aligned_cols=141 Identities=22% Similarity=0.364 Sum_probs=112.4
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++++++ ++.++.|++|.+.+.+++|++++
T Consensus 12 ~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~v~~v~v~~d~~~~~~~~~~~~~ 89 (165)
T 3or5_A 12 TPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASR--GFTFVGIAVNEQLPNVKNYMKTQ 89 (165)
T ss_dssp CBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT--TEEEEEEECSCCHHHHHHHHHHH
T ss_pred CCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC--CeEEEEEECCCCHHHHHHHHHHc
Confidence 34589988 9999999999999999999999999999999999999999999865 69999999999899999999887
Q ss_pred CCcccccCchhhHHHHHhc------CCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 008336 415 PWLALPFGDARKASLSRKF------KVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW 488 (569)
Q Consensus 415 ~~~~~~~~~d~~~~l~~~~------~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~ 488 (569)
+ +.+|+..+.. .+.+.| ++.++|+++|||++|+++.+..+. . ..+++.+.|++++++.
T Consensus 90 ~-~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~-----------~---~~~~l~~~l~~~l~~~ 153 (165)
T 3or5_A 90 G-IIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGP-----------R---SKADFDRIVKMALGAK 153 (165)
T ss_dssp T-CCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSC-----------C---CHHHHHHHHHHHHC--
T ss_pred C-CCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCC-----------C---CHHHHHHHHHHHHhhh
Confidence 7 5667666654 677777 899999999999999999874221 1 2355677777777655
Q ss_pred Cccccc
Q 008336 489 PENVKH 494 (569)
Q Consensus 489 ~~~~~~ 494 (569)
......
T Consensus 154 ~~~~~~ 159 (165)
T 3or5_A 154 AATKEG 159 (165)
T ss_dssp ------
T ss_pred cccccc
Confidence 444433
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-19 Score=161.05 Aligned_cols=116 Identities=26% Similarity=0.320 Sum_probs=104.9
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc--EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK--IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk--vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
.+|.++|+| +.+.+|+.+++++++|| ++|+|| ++||++|+.++|.|.+++++|++.+ +.|++|++| +.+.+++|
T Consensus 3 ~~G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~-v~vv~vs~d-~~~~~~~~ 80 (161)
T 3drn_A 3 KVGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYD-VVVIGVSSD-DINSHKRF 80 (161)
T ss_dssp CTTSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTC-EEEEEEESC-CHHHHHHH
T ss_pred CCCCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcC-CEEEEEeCC-CHHHHHHH
Confidence 369999999 66789999999999999 899999 9999999999999999999999875 999999998 68899999
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCCCC----ccEEEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKVMG----IPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~----~P~~~lid~~G~i~~~ 133 (569)
++++++.+..+.+.. ..+.+.|++.+ +|+++|||++|+|+..
T Consensus 81 ~~~~~~~~~~~~d~~--~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~ 126 (161)
T 3drn_A 81 KEKYKLPFILVSDPD--KKIRELYGAKGFILPARITFVIDKKGIIRHI 126 (161)
T ss_dssp HHHTTCCSEEEECTT--SHHHHHTTCCCSSSCCCEEEEECTTSBEEEE
T ss_pred HHHhCCCceEEECCc--HHHHHHcCCCCcCcccceEEEECCCCEEEEE
Confidence 999998877666644 47899999999 9999999999999874
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-20 Score=165.88 Aligned_cols=136 Identities=16% Similarity=0.198 Sum_probs=117.5
Q ss_pred cCCccce--e-cCCCCceecccCCCCEEEEEEec-CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 336 SGDLDFV--V-GKNGGKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 336 ~~~~~f~--~-~~~g~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
...|+|. + +.+|+++++++++||++||+||+ +||++|+.++|.|++++++++++ ++.||+|++| +++.+++|+
T Consensus 11 ~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d-~~~~~~~~~ 87 (163)
T 3gkn_A 11 LPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKA--GAKILGVSRD-SVKSHDNFC 87 (163)
T ss_dssp CCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHT--TCEEEEEESS-CHHHHHHHH
T ss_pred CcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHHHHHHH
Confidence 4468999 8 99999999999999999999997 99999999999999999999876 6999999998 778899999
Q ss_pred hcCCCcccccCchhhHHHHHhcCCCC------------ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHH
Q 008336 412 KGMPWLALPFGDARKASLSRKFKVSG------------IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 479 (569)
Q Consensus 412 ~~~~~~~~~~~~d~~~~l~~~~~v~~------------~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~ 479 (569)
++++ +.+|++.|....+++.|++.. +|++||||++|+|++... + ......++++.+
T Consensus 88 ~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~-------~----~~~~~~~~~il~ 155 (163)
T 3gkn_A 88 AKQG-FAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWR-------K----VKVAGHADAVLA 155 (163)
T ss_dssp HHHC-CSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEEC-------S----CCSTTHHHHHHH
T ss_pred HHhC-CCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEc-------C----CCcccCHHHHHH
Confidence 9887 678888888899999999987 999999999999998741 1 123456677888
Q ss_pred Hhhhhhc
Q 008336 480 QYNEMAK 486 (569)
Q Consensus 480 ~l~~l~~ 486 (569)
.|+++.+
T Consensus 156 ~l~~l~~ 162 (163)
T 3gkn_A 156 ALKAHAK 162 (163)
T ss_dssp HHHHHCC
T ss_pred HHHHHhc
Confidence 8877653
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=162.36 Aligned_cols=119 Identities=24% Similarity=0.418 Sum_probs=102.4
Q ss_pred cccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 12 QSLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 12 ~~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
....|.++|+| +.+.+|+.+++++++|| ++|+||++||++|+.++|.|.++++++++++ +.|++|++|...+.+++|
T Consensus 8 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~-~~vv~i~~d~~~~~~~~~ 86 (152)
T 2lrt_A 8 DKIKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG-FEIYQISLDGDEHFWKTS 86 (152)
T ss_dssp SSSCTTCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT-EEEEEEECSCCHHHHHHH
T ss_pred hhccCCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCC-eEEEEEEccCCHHHHHHH
Confidence 34678999999 66789999999999999 9999999999999999999999999998875 999999999999889999
Q ss_pred HHhCCCcccccCCchh-HHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDSET-RDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~-~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
..+.++. .+.+... ...+.+.|++.++|+++|||++|+|+..
T Consensus 87 ~~~~~~~--~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 129 (152)
T 2lrt_A 87 ADNLPWV--CVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSAR 129 (152)
T ss_dssp HTTCSSE--EEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEE
T ss_pred HhCCCce--EEECCCCcchHHHHHcCcccCceEEEECCCCeEEEe
Confidence 8765443 3333332 2348899999999999999999999875
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.6e-20 Score=162.38 Aligned_cols=137 Identities=21% Similarity=0.399 Sum_probs=116.5
Q ss_pred CCc-ccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 337 GDL-DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 337 ~~~-~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
..| +|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++++++ ++.+++|++|.+.+.++++++++
T Consensus 8 ~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~ 85 (152)
T 2lja_A 8 PSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGK--DIHFVSLSCDKNKKAWENMVTKD 85 (152)
T ss_dssp CCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTS--SEEEEEEECCSCHHHHHHHHHHH
T ss_pred CCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccC--CeEEEEEEccCcHHHHHHHHHhc
Confidence 457 9988 9999999999999999999999999999999999999999999764 69999999999888999999988
Q ss_pred CCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 008336 415 PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 489 (569)
Q Consensus 415 ~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~ 489 (569)
++..+++..|....+++.|++.++|+++|+|++|+++.+..+. . ..++|.+.|++++.+.+
T Consensus 86 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----------~---~~~~l~~~l~~~~~~~~ 146 (152)
T 2lja_A 86 QLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTR-----------P---SDPKTAEKFNELLGLEG 146 (152)
T ss_dssp TCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEESSCCC-----------T---TCHHHHHHHHHHHTCCS
T ss_pred CCCCceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEccCCC-----------C---CHHHHHHHHHHHhcccc
Confidence 7655677777778899999999999999999999999984321 1 22456777777776554
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-20 Score=164.90 Aligned_cols=118 Identities=15% Similarity=0.259 Sum_probs=102.4
Q ss_pred ccCccCCc-eec--CCCceeecCCCCCc-EEEEEecCCCHhhHhh-HHHHHHHHHHhcCCCCEEEEEEeCC------CCH
Q 008336 15 LSSSARDF-LIR--SNGDQVKLDSLKGK-IGLYFSASWCGPCQRF-TPILAEVYNELSRQGDFEVIFVSGD------EDD 83 (569)
Q Consensus 15 ~g~~~pdf-~~~--~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~-~p~l~~~~~~~~~~g~~~vv~v~~d------~~~ 83 (569)
.|.++|+| +.+ .+|+.+++++++|| +||+||++||++|+.+ +|.|.+++++|++.+ +.+++|++| ++.
T Consensus 2 ~g~~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~-v~~v~v~~~~~~~~~~~~ 80 (158)
T 3eyt_A 2 NAMKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK-VAVLGLHTVFEHHEAMTP 80 (158)
T ss_dssp CCEECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT-EEEEEEECCCSCGGGSCH
T ss_pred CCCcCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCC-EEEEEEEecccccccCCH
Confidence 48899999 445 38899999999999 9999999999999996 999999999998764 999999984 588
Q ss_pred HHHHHHHHhCCCcccccCCchhHH---HHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 84 EAFKGYFSKMPWLAVPFSDSETRD---KLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+.+++|++++++.+..+.+..... .+.+.|++.++|+++|||++|+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 133 (158)
T 3eyt_A 81 ISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAH 133 (158)
T ss_dssp HHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEE
T ss_pred HHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 999999999998766555544321 58899999999999999999999874
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-19 Score=167.61 Aligned_cols=185 Identities=12% Similarity=0.139 Sum_probs=121.1
Q ss_pred cCcEEEEEEecC-CcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcc
Q 008336 196 EGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (569)
Q Consensus 196 ~gk~v~l~f~~~-~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~ 274 (569)
+++.++++|+++ ||++|+.+.|.+.++++. ...+.++.++++..+ ...+++.|+
T Consensus 21 ~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~----~~~v~~~~vd~~~~~---------------------~~~~~~~~~ 75 (226)
T 1a8l_A 21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSEL----TDKLSYEIVDFDTPE---------------------GKELAKRYR 75 (226)
T ss_dssp CSCEEEEEEECSSSCTTHHHHHHHHHHHHTT----CTTEEEEEEETTSHH---------------------HHHHHHHTT
T ss_pred CCCeEEEEEecCCCCchhHHHHHHHHHHHhh----CCceEEEEEeCCCcc---------------------cHHHHHHcC
Confidence 456778999999 999999999999887643 234555555554321 457899999
Q ss_pred cCCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCccceecCCCCce-ecc
Q 008336 275 LSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV-PVS 353 (569)
Q Consensus 275 v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~~~g~~v-~l~ 353 (569)
|.++||++++..+..... ...| ..+...+..+.......... .. ..+...+ .+.
T Consensus 76 v~~~Pt~~~~~~g~~~~~-------~~~G----~~~~~~l~~~l~~~l~~~~~------------~~--~l~~~~~~~~~ 130 (226)
T 1a8l_A 76 IDRAPATTITQDGKDFGV-------RYFG----LPAGHEFAAFLEDIVDVSRE------------ET--NLMDETKQAIR 130 (226)
T ss_dssp CCSSSEEEEEETTBCCSE-------EEES----CCCTTHHHHHHHHHHHHHHT------------CC--CCCHHHHHHHT
T ss_pred CCcCceEEEEcCCceeeE-------EEec----cCcHHHHHHHHHHHHhhcCC------------CC--CCCHHHHHHHH
Confidence 999999999953322100 0111 11334444444432211100 00 0011110 011
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhc-CCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
...++.++|+||++||++|+++.|.|.+++++++.+ ..++.++.|+++..+ .+++.
T Consensus 131 ~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~-----------------------~l~~~ 187 (226)
T 1a8l_A 131 NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP-----------------------EWADQ 187 (226)
T ss_dssp TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCH-----------------------HHHHH
T ss_pred hcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCH-----------------------HHHHh
Confidence 223455699999999999999999999999999731 124888888877554 58899
Q ss_pred cCCCCccEEEEECCCCcEEEcc
Q 008336 433 FKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
|+|+++||++++ ++|+.+.+.
T Consensus 188 ~~v~~~Pt~~~~-~~G~~~~~~ 208 (226)
T 1a8l_A 188 YNVMAVPKIVIQ-VNGEDRVEF 208 (226)
T ss_dssp TTCCSSCEEEEE-ETTEEEEEE
T ss_pred CCCcccCeEEEE-eCCceeEEE
Confidence 999999998888 689887663
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.1e-20 Score=165.18 Aligned_cols=121 Identities=16% Similarity=0.250 Sum_probs=103.7
Q ss_pred cccccCccCCc-eec-CCCceeecCCCCCc-EEEEEecCCCHhhHhh-HHHHHHHHHHhcCCCCEEEEEEeCC------C
Q 008336 12 QSLLSSSARDF-LIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRF-TPILAEVYNELSRQGDFEVIFVSGD------E 81 (569)
Q Consensus 12 ~~~~g~~~pdf-~~~-~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~-~p~l~~~~~~~~~~g~~~vv~v~~d------~ 81 (569)
.++.|.++|+| +.+ .+|+.+++++++|| +||+||++||++|+.+ +|.|.+++++|++++ +.+++|+++ +
T Consensus 2 s~~~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~-v~~v~v~~~~~~~~~~ 80 (160)
T 3lor_A 2 SSLDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ-VQVIGLHSVFEHHDVM 80 (160)
T ss_dssp --CTTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT-EEEEEEECCCSCGGGS
T ss_pred cccCCCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCC-cEEEEEeccccccccC
Confidence 35679999999 555 79999999999999 9999999999999995 999999999998775 999999984 6
Q ss_pred CHHHHHHHHHhCCCcccccCCchhH----HHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 82 DDEAFKGYFSKMPWLAVPFSDSETR----DKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+.+.+++|++++++.+..+.+.... ..+.+.|++.++|+++|||++|+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 136 (160)
T 3lor_A 81 TPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQV 136 (160)
T ss_dssp CHHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred CHHHHHHHHHHcCCCCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEE
Confidence 8899999999998876655444331 128899999999999999999999874
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=160.06 Aligned_cols=116 Identities=28% Similarity=0.525 Sum_probs=104.0
Q ss_pred ccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHh
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~ 92 (569)
+|.++|+| +.+.+|+.+++++++|| +||+||++||++|+.++|.|.++++++++.+ +.++.|+++.+.+.+++|+++
T Consensus 2 ~G~~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~-v~vv~v~~d~~~~~~~~~~~~ 80 (151)
T 2f9s_A 2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG-VEIVAVNVGESKIAVHNFMKS 80 (151)
T ss_dssp CCEECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESCCHHHHHHHHHH
T ss_pred CCCcCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC-eEEEEEECCCCHHHHHHHHHH
Confidence 68999999 56789999999999999 9999999999999999999999999998764 999999999999999999999
Q ss_pred CCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 93 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+++.+..+.+.. ..+.+.|++.++|+++++|++|+++..
T Consensus 81 ~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~~G~i~~~ 119 (151)
T 2f9s_A 81 YGVNFPVVLDTD--RQVLDAYDVSPLPTTFLINPEGKVVKV 119 (151)
T ss_dssp HTCCSCEEEETT--SHHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred cCCCceEEECCc--hHHHHhcCCCCCCeEEEECCCCcEEEE
Confidence 987765555443 368899999999999999999999864
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-20 Score=165.06 Aligned_cols=120 Identities=23% Similarity=0.366 Sum_probs=106.6
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
..+|.++|+| +.+.+|+.+++++++|| ++|+||++||++|+.++|.|.++++++++.+ +.+++|++|.+.+.+++|+
T Consensus 5 ~~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~v~v~~d~~~~~~~~~~ 83 (148)
T 3hcz_A 5 LLLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG-IQVYAANIERKDEEWLKFI 83 (148)
T ss_dssp CCTTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGT-EEEEEEECCSSSHHHHHHH
T ss_pred cCCCCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC-EEEEEEEecCCHHHHHHHH
Confidence 3679999999 55789999999999999 9999999999999999999999999998874 9999999998889999999
Q ss_pred HhCCCc-ccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 91 SKMPWL-AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~-~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+++++. +..+.+......+.+.|++.++|+++++|++|+++..
T Consensus 84 ~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 127 (148)
T 3hcz_A 84 RSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAK 127 (148)
T ss_dssp HHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEE
T ss_pred HHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEe
Confidence 999877 5555555443348899999999999999999999875
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-19 Score=158.88 Aligned_cols=116 Identities=30% Similarity=0.503 Sum_probs=105.5
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~ 91 (569)
.+|.++|+| +.+ +|+.+++++++|| +||+||++||++|+.++|.|.++++++++.+ +.+++|++|.+.+.+++|++
T Consensus 4 ~~G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~v~v~~d~~~~~~~~~~~ 81 (152)
T 3gl3_A 4 DKGDKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG-FQVVAVNLDAKTGDAMKFLA 81 (152)
T ss_dssp CTTSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGT-EEEEEEECCSSHHHHHHHHH
T ss_pred CCCCcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC-eEEEEEECCCCHHHHHHHHH
Confidence 479999999 456 9999999999999 9999999999999999999999999999875 99999999999999999999
Q ss_pred hCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 92 KMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
++++.+..+.+... .+.+.|++.++|+++|||++|+++..
T Consensus 82 ~~~~~~~~~~d~~~--~~~~~~~v~~~P~~~lid~~G~i~~~ 121 (152)
T 3gl3_A 82 QVPAEFTVAFDPKG--QTPRLYGVKGMPTSFLIDRNGKVLLQ 121 (152)
T ss_dssp HSCCCSEEEECTTC--HHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred HcCCCCceeECCcc--hhHHHcCCCCCCeEEEECCCCCEEEE
Confidence 99987776666553 68999999999999999999999874
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-19 Score=158.61 Aligned_cols=116 Identities=17% Similarity=0.307 Sum_probs=97.4
Q ss_pred cCccCCceecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCC
Q 008336 16 SSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMP 94 (569)
Q Consensus 16 g~~~pdf~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~ 94 (569)
+.|+|+|....+|+.+++++++|| +||+|||+||++|+.++|.|.+++++++.. ++.|++|++| +.+.+++|+++++
T Consensus 2 ~~pa~~~~~~~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-~v~vv~v~~d-~~~~~~~~~~~~~ 79 (151)
T 3raz_A 2 SLSADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKG-SVDMVGIALD-TSDNIGNFLKQTP 79 (151)
T ss_dssp -----CEEETTTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-TEEEEEEESS-CHHHHHHHHHHSC
T ss_pred CCCcchhhcccCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC-CeEEEEEECC-ChHHHHHHHHHcC
Confidence 457788876689999999999999 999999999999999999999999999766 4999999997 5678999999998
Q ss_pred CcccccCCc-hhHHHHHHhcC--CCCccEEEEECCCCcEEEc
Q 008336 95 WLAVPFSDS-ETRDKLDELFK--VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 95 ~~~~~~~~~-~~~~~l~~~~~--v~~~P~~~lid~~G~i~~~ 133 (569)
..+..+.+. .....+.+.|+ +.++|+++|||++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 121 (151)
T 3raz_A 80 VSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQT 121 (151)
T ss_dssp CSSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEE
T ss_pred CCCceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEE
Confidence 776665433 23457899999 9999999999999999864
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-20 Score=164.31 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=96.3
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
-+|++||+| +.+.+|+.++|++++|| ++|+|| ++|||+|+.++|.|.+++++++..+ +.+++|+.| +++..++|+
T Consensus 5 ~vG~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~-~~~v~vs~d-~~~~~~~~~ 82 (157)
T 4g2e_A 5 EIGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVN-AVVLGISVD-PPFSNKAFK 82 (157)
T ss_dssp CTTSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCS-SEEEEEESS-CHHHHHHHH
T ss_pred CCCCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccC-ceEeeeccc-chhHHHHHH
Confidence 379999999 66789999999999999 999998 9999999999999999999998875 999999998 577889999
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCC-----------CccEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~ 133 (569)
+++++.+..+.|.+. .+++.||+. ..|++||||++|+|++.
T Consensus 83 ~~~~~~~p~l~D~~~--~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~ 134 (157)
T 4g2e_A 83 EHNKLNFTILSDYNR--EVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYK 134 (157)
T ss_dssp HHTTCCSEEEECTTS--HHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEE
T ss_pred HHcCCcEEEEEcCCc--HHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEE
Confidence 999987776666553 689999974 46899999999999874
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=167.27 Aligned_cols=139 Identities=25% Similarity=0.366 Sum_probs=114.6
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC-hhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD-QTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~-~~~~~~~~~~ 413 (569)
...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ ++.|++|++|.+ .+.+++|+++
T Consensus 38 ~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~~~~~~~~~~ 115 (186)
T 1jfu_A 38 LKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP--NFEVVAINIDTRDPEKPKTFLKE 115 (186)
T ss_dssp CBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT--TEEEEEEECCCSCTTHHHHHHHH
T ss_pred CcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccC--CcEEEEEECCCCCHHHHHHHHHH
Confidence 34589988 9999999999999999999999999999999999999999999754 699999999964 5788899999
Q ss_pred CCCcccccCchhhHHHHHhcCCC----CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 008336 414 MPWLALPFGDARKASLSRKFKVS----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW 488 (569)
Q Consensus 414 ~~~~~~~~~~d~~~~l~~~~~v~----~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~ 488 (569)
++...+|++.|....+.+.|++. ++|+++|||++|+|+.+..+. . ++ ..+++.+.|+.++++.
T Consensus 116 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~-------~--~~---~~~~l~~~l~~ll~~~ 182 (186)
T 1jfu_A 116 ANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGP-------A--EW---ASEDALKLIRAATGKA 182 (186)
T ss_dssp TTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESC-------C--CT---TSHHHHHHHHHHHC--
T ss_pred cCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEEEecC-------C--cc---CHHHHHHHHHHHhccc
Confidence 88657888888888899999986 999999999999999884321 1 11 2245666677776543
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=161.47 Aligned_cols=140 Identities=19% Similarity=0.312 Sum_probs=117.2
Q ss_pred ccCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-CChhHHHHHHh
Q 008336 335 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-RDQTSFDEFFK 412 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-~~~~~~~~~~~ 412 (569)
....|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++++++ ++.|++|+.+ .+.+.+++|++
T Consensus 5 G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~ 82 (153)
T 2l5o_A 5 SKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNK--NFQVLAVAQPIDPIESVRQYVK 82 (153)
T ss_dssp CTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT--TEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC--CeEEEEEecCCCCHHHHHHHHH
Confidence 345689988 9999999999999999999999999999999999999999999865 6999999986 35678889999
Q ss_pred cCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCcc
Q 008336 413 GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN 491 (569)
Q Consensus 413 ~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~~ 491 (569)
+++ +.+++..+....+++.|++.++|+++|||++|+++.+..+. ...++|.+.|++++.....+
T Consensus 83 ~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~--------------~~~~~l~~~l~~ll~~~~~~ 146 (153)
T 2l5o_A 83 DYG-LPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGE--------------PDFGKLYQEIDTAWRNSDAE 146 (153)
T ss_dssp HTT-CCSEEEECSSCHHHHHHTCCSSSEEEEECSSSCCCEEEESS--------------CCHHHHHHHHHHHHHCCSSC
T ss_pred HcC-CCceEEcCchHHHHHHcCCCccCeEEEECCCCcEEEEEcCC--------------CCHHHHHHHHHHHHHhhhhc
Confidence 887 56777777788899999999999999999999998764221 23456778888887765543
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-19 Score=155.11 Aligned_cols=115 Identities=25% Similarity=0.482 Sum_probs=103.8
Q ss_pred Ccccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEe-----CCCChhHHHHHH
Q 008336 338 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS-----SDRDQTSFDEFF 411 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is-----~d~~~~~~~~~~ 411 (569)
.|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.++++++.. ++.++.|. .+.+.+.+++++
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~v~i~~~~~~~~~~~~~~~~~~ 78 (138)
T 4evm_A 2 VADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD---DYVVLTVVSPGHKGEQSEADFKNWY 78 (138)
T ss_dssp CCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT---TEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC---CcEEEEEEcCCCCchhhHHHHHHHH
Confidence 478987 999999999999999999999999999999999999999998654 48999994 456778999999
Q ss_pred hcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccc
Q 008336 412 KGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 412 ~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
+++++..+|+..+....+++.|++.++|+++|+|++|+++.+..
T Consensus 79 ~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 122 (138)
T 4evm_A 79 KGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHP 122 (138)
T ss_dssp TTCCCTTCCEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEEE
T ss_pred hhcCCCCeeEEECcchHHHHHcCcccCCeEEEECCCCcEEEeec
Confidence 99997789998888889999999999999999999999998753
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-19 Score=169.18 Aligned_cols=118 Identities=18% Similarity=0.296 Sum_probs=106.4
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc--EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDD 83 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk--vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~ 83 (569)
.+|.++|+| +.+.+|+.+++++++|| +||+||++||++|+.++|.|.+++++|++++ +.|++|++| ++.
T Consensus 33 ~~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~-v~vv~Vs~d~~~~~~~d~~ 111 (218)
T 3u5r_E 33 TLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQG-LAVVAINSNDAQAFPEETL 111 (218)
T ss_dssp CTTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTT-EEEEEEECSCTTTCGGGSH
T ss_pred CCCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCC-cEEEEEECCcccccccCCH
Confidence 579999999 66789999999999999 8999999999999999999999999998875 999999997 688
Q ss_pred HHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcC
Q 008336 84 EAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134 (569)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 134 (569)
+.+++|++++++.+..+.+.. ..+.+.|++.++|+++|||++|+|+++.
T Consensus 112 ~~~~~~~~~~~~~~~~l~D~~--~~~~~~~~v~~~P~~~liD~~G~i~~~g 160 (218)
T 3u5r_E 112 ERVGAEVKAYGYGFPYLKDAS--QSVAKAYGAACTPDFFLYDRERRLVYHG 160 (218)
T ss_dssp HHHHHHHHHHTCCSCEEECTT--CHHHHHHTCCEESEEEEECTTCBEEEEE
T ss_pred HHHHHHHHHhCCCccEEECCc--cHHHHHcCCCCCCeEEEECCCCcEEEec
Confidence 999999999988776666644 3689999999999999999999998753
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.80 E-value=9.4e-19 Score=168.82 Aligned_cols=115 Identities=12% Similarity=0.184 Sum_probs=98.1
Q ss_pred cccCccCCce-ecC-CCc--eeecCC-CCCc-EEEEEe-cCCCHhhH-hhHHHHHHHHHHhcCCCCE-EEEEEeCCCCHH
Q 008336 14 LLSSSARDFL-IRS-NGD--QVKLDS-LKGK-IGLYFS-ASWCGPCQ-RFTPILAEVYNELSRQGDF-EVIFVSGDEDDE 84 (569)
Q Consensus 14 ~~g~~~pdf~-~~~-~g~--~v~l~~-~~gk-vlv~F~-a~wC~~C~-~~~p~l~~~~~~~~~~g~~-~vv~v~~d~~~~ 84 (569)
.+|.++|+|. .+. +|+ .+++++ ++|| ++|+|| ++|||+|+ .++|.|++++++|++.+ + +|++|+.| +.+
T Consensus 4 ~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~-~~~vv~is~d-~~~ 81 (241)
T 1nm3_A 4 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYG-VDDILVVSVN-DTF 81 (241)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTT-CCEEEEEESS-CHH
T ss_pred cCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEEcC-CHH
Confidence 4799999994 454 677 999999 8999 999998 99999999 99999999999998875 9 99999998 477
Q ss_pred HHHHHHHhCCCc-ccccCCchhHHHHHHhcCCC-----------CccEEEEECCCCcEEEc
Q 008336 85 AFKGYFSKMPWL-AVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~ 133 (569)
..++|+++++.. +..+.|.+ ..+++.||+. ..|+++|| ++|+|+..
T Consensus 82 ~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~ 139 (241)
T 1nm3_A 82 VMNAWKEDEKSENISFIPDGN--GEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKM 139 (241)
T ss_dssp HHHHHHHHTTCTTSEEEECTT--SHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEE
T ss_pred HHHHHHHhcCCCceEEEECCC--cHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEE
Confidence 889999999876 54455544 4688999986 45999999 99999875
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=164.20 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=104.0
Q ss_pred cCCcccee-cC--CCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCe------EEEEEeCCC-Chh
Q 008336 336 SGDLDFVV-GK--NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESL------EVVFISSDR-DQT 405 (569)
Q Consensus 336 ~~~~~f~~-~~--~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~------~vv~is~d~-~~~ 405 (569)
...|+|.+ +. +|+.+++++++||++||+||++||++|+.++|.|.+++++++++ ++ .|++|++|. +++
T Consensus 35 ~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~~~~~v~~v~v~~d~~~~~ 112 (183)
T 3lwa_A 35 QQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAA--GNGDTPGGTVLGINVRDYSRD 112 (183)
T ss_dssp CCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHC--C---CCSEEEEEEECSCCCHH
T ss_pred CCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhc--CCCccCCcEEEEEECCCCCHH
Confidence 45689988 88 99999999999999999999999999999999999999999876 46 999999998 789
Q ss_pred HHHHHHhcCCCcccccCchhhHHHHHhc---CCCCccEEEEECCCCcEEEcc
Q 008336 406 SFDEFFKGMPWLALPFGDARKASLSRKF---KVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~d~~~~l~~~~---~v~~~Pt~~lid~~G~i~~~~ 454 (569)
.+++|+++++ +.+|++.|....+.+.| ++.++|+++|||++|+|+.+.
T Consensus 113 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 163 (183)
T 3lwa_A 113 IAQDFVTDNG-LDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVF 163 (183)
T ss_dssp HHHHHHHHTT-CCSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEEE
T ss_pred HHHHHHHHcC-CCccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEEE
Confidence 9999999887 56888888888888877 589999999999999999874
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-21 Score=171.65 Aligned_cols=138 Identities=21% Similarity=0.309 Sum_probs=117.0
Q ss_pred cCCcccee-cCCCCceecccC--CCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDL--AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~--~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
...|+|.+ +.+|++++|+++ +||+++|+|| ++|||+|+.++|.|++++++++++ ++.+++||.| +++..++|.
T Consensus 9 ~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~--~v~vv~is~d-~~~~~~~~~ 85 (164)
T 4gqc_A 9 EKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA--NAEVLAISVD-SPWCLKKFK 85 (164)
T ss_dssp SBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGS--SSEEEEEESS-CHHHHHHHH
T ss_pred CCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhcc--CceEEEecCC-CHHHHHHHH
Confidence 34699998 999999999998 8999999998 999999999999999999999876 7999999998 567888999
Q ss_pred hcCCCcccccCchhhHHHHHhcCCC----------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHh
Q 008336 412 KGMPWLALPFGDARKASLSRKFKVS----------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQY 481 (569)
Q Consensus 412 ~~~~~~~~~~~~d~~~~l~~~~~v~----------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l 481 (569)
++++ +.||++.|.++++++.|||. ..|++||||++|+|++++... .|....+++++.+.+
T Consensus 86 ~~~~-~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~---------~~~~~~~~~eil~~l 155 (164)
T 4gqc_A 86 DENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTD---------NPLNEPDYDEVVREA 155 (164)
T ss_dssp HHTT-CCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECS---------CTTCCCCHHHHHHHH
T ss_pred HhcC-cccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeC---------CCCCCCCHHHHHHHH
Confidence 8887 68999999999999999984 478999999999999985322 134445677777887
Q ss_pred hhhhc
Q 008336 482 NEMAK 486 (569)
Q Consensus 482 ~~l~~ 486 (569)
++++.
T Consensus 156 ~~l~~ 160 (164)
T 4gqc_A 156 NKIAG 160 (164)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77754
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-19 Score=157.58 Aligned_cols=118 Identities=26% Similarity=0.516 Sum_probs=104.7
Q ss_pred cccCccC-Cc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSAR-DF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~p-df-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|.++| +| +.+.+|+.+++++++|| ++|+||++||++|+.++|.|.++++++.+.+ +.+++|++|.+.+.+++|+
T Consensus 4 ~~G~~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~v~v~~d~~~~~~~~~~ 82 (152)
T 2lja_A 4 RSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD-IHFVSLSCDKNKKAWENMV 82 (152)
T ss_dssp TTTCCCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSS-EEEEEEECCSCHHHHHHHH
T ss_pred ccCCCCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCC-eEEEEEEccCcHHHHHHHH
Confidence 3699999 99 55789999999999999 9999999999999999999999999998664 9999999999999999999
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
++.++.+.++.... ...+.+.|++.++|+++++|++|+++..
T Consensus 83 ~~~~~~~~~~~~d~-~~~~~~~~~v~~~P~~~lid~~G~i~~~ 124 (152)
T 2lja_A 83 TKDQLKGIQLHMGT-DRTFMDAYLINGIPRFILLDRDGKIISA 124 (152)
T ss_dssp HHHTCCSEEEECSS-CTHHHHHTTCCSSCCEEEECTTSCEEES
T ss_pred HhcCCCCceeecCc-chhHHHHcCcCCCCEEEEECCCCeEEEc
Confidence 99887766554332 2468899999999999999999999875
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=156.79 Aligned_cols=111 Identities=22% Similarity=0.355 Sum_probs=102.7
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
..|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|++++++++ ++.++.|++|.+.+.+++|+++++
T Consensus 3 ~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~ 78 (136)
T 1lu4_A 3 ERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP----AVTFVGIATRADVGAMQSFVSKYN 78 (136)
T ss_dssp GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHHHHHHHHHT
T ss_pred CCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC----CcEEEEEEcCCCHHHHHHHHHHcC
Confidence 3578887 99999999999999999999999999999999999999999986 489999999998999999999887
Q ss_pred CcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 416 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 416 ~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
+.+|+..|....+++.|++.++|+++++|++|+++ +
T Consensus 79 -~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~-~ 114 (136)
T 1lu4_A 79 -LNFTNLNDADGVIWARYNVPWQPAFVFYRADGTST-F 114 (136)
T ss_dssp -CCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE-E
T ss_pred -CCceEEECCchhHHHhcCCCCCCEEEEECCCCcEE-E
Confidence 47888888888999999999999999999999998 5
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-19 Score=158.04 Aligned_cols=118 Identities=31% Similarity=0.593 Sum_probs=105.2
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC-HHHHHHH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED-DEAFKGY 89 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~-~~~~~~~ 89 (569)
..+|.++|+| +.+.+|+.+++++++|| +||+||++||++|+.++|.|.++++++.+.+ +.+++|++|.+ .+.+++|
T Consensus 2 ~~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~-~~~v~v~~d~~~~~~~~~~ 80 (154)
T 3kcm_A 2 SLEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP-FRMLCVSIDEGGKVAVEEF 80 (154)
T ss_dssp -CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSS-EEEEEEECCTTHHHHHHHH
T ss_pred CCCCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC-eEEEEEEcCCcchHHHHHH
Confidence 3679999999 56789999999999999 9999999999999999999999999998764 99999999987 8889999
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
++++++.+..+.+.. ..+.+.|++.++|+++|+|++|+++..
T Consensus 81 ~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~~G~i~~~ 122 (154)
T 3kcm_A 81 FRKTGFTLPVLLDAD--KRVGKLYGTTGVPETFVIDRHGVILKK 122 (154)
T ss_dssp HHHHCCCCCEEECTT--CHHHHHHTCCSBCEEEEECTTSBEEEE
T ss_pred HHHcCCCeeEEecCc--hHHHHHhCCCCCCeEEEECCCCcEEEE
Confidence 999987766665544 468999999999999999999999874
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-19 Score=158.96 Aligned_cols=117 Identities=25% Similarity=0.433 Sum_probs=104.9
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
..+|.++|+| +.+.+|+.+++++++|| +||+||++||++|+.++|.|.++++++++.+ +.+++|++|.+.+.+++|+
T Consensus 8 ~~~g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~-v~~v~v~~d~~~~~~~~~~ 86 (165)
T 3or5_A 8 DARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG-FTFVGIAVNEQLPNVKNYM 86 (165)
T ss_dssp CCCCCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTT-EEEEEEECSCCHHHHHHHH
T ss_pred hcCCCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC-eEEEEEECCCCHHHHHHHH
Confidence 4679999999 56789999999999999 9999999999999999999999999998774 9999999999999999999
Q ss_pred HhCCCcccccCCchhHHHHHHhc------CCCCccEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELF------KVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~------~v~~~P~~~lid~~G~i~~~ 133 (569)
+++++.+..+.+.. .+.+.| ++.++|+++|+|++|+++..
T Consensus 87 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 132 (165)
T 3or5_A 87 KTQGIIYPVMMATP---ELIRAFNGYIDGGITGIPTSFVIDASGNVSGV 132 (165)
T ss_dssp HHHTCCSCEEECCH---HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEE
T ss_pred HHcCCCCceEecCH---HHHHHHhhhhccCCCCCCeEEEECCCCcEEEE
Confidence 99988776666554 466777 89999999999999999864
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-19 Score=164.19 Aligned_cols=142 Identities=10% Similarity=0.205 Sum_probs=115.5
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhHHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSFD 408 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~~~ 408 (569)
..|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ +.|++|++| .+.+.++
T Consensus 12 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---~~~v~v~~d~~~~~~~d~~~~~~ 88 (188)
T 2cvb_A 12 PLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAPEKMA 88 (188)
T ss_dssp BCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSHHHHH
T ss_pred CCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC---eEEEEEEcCccccccccCHHHHH
Confidence 4589988 9999999999999999999999999999999999999999999764 999999996 4667889
Q ss_pred HHHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCC-CHHHHHHHHHHhhhhhcC
Q 008336 409 EFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPF-TEERMKEIDGQYNEMAKG 487 (569)
Q Consensus 409 ~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~-~~~~~~~l~~~l~~l~~~ 487 (569)
+|+++++ +.+|++.|....+++.|++.++|+++|||++|+|++++.... + .++ .....++|.+.|++++++
T Consensus 89 ~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~g~~~~---~----~~~~g~~~~~~l~~~i~~ll~~ 160 (188)
T 2cvb_A 89 AFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVND---N----PKDPSKVQSHDLEAAIEALLRG 160 (188)
T ss_dssp HHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSS---C----TTCGGGCCCCHHHHHHHHHHTT
T ss_pred HHHHHhC-CCceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEEEecCC---c----cccccccCHHHHHHHHHHHHcC
Confidence 9999887 578888888889999999999999999999999999822110 0 000 001224567777777765
Q ss_pred CC
Q 008336 488 WP 489 (569)
Q Consensus 488 ~~ 489 (569)
.+
T Consensus 161 ~~ 162 (188)
T 2cvb_A 161 EE 162 (188)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-19 Score=161.00 Aligned_cols=110 Identities=22% Similarity=0.397 Sum_probs=102.5
Q ss_pred Ccccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC---------------
Q 008336 338 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD--------------- 401 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d--------------- 401 (569)
.|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++++ ++.|++|++|
T Consensus 17 ~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~----~v~vv~i~~d~~~~~~~~~~~~~~~ 92 (165)
T 3ha9_A 17 EASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR----EISVIAIDFWTAEALKALGLNKPGY 92 (165)
T ss_dssp HHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT----TEEEEEEECCSHHHHHHHTCCSTTS
T ss_pred CCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC----CcEEEEEEecccccccccccccccC
Confidence 478877 99999999999999999999999999999999999999999987 4999999999
Q ss_pred ---CChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 402 ---RDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 402 ---~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~ 452 (569)
.+.+.+++|++++++..+|+..| ...+++.|+|.++|+++|||++|+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~~P~~~lid~~G~i~~ 145 (165)
T 3ha9_A 93 PPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRSIDYIVIMDKSSNVLY 145 (165)
T ss_dssp CCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred CCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence 78899999999988558888888 889999999999999999999999999
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-19 Score=154.92 Aligned_cols=112 Identities=21% Similarity=0.356 Sum_probs=103.4
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
..|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++++ ++.++.|++|.+.+.+++++++++
T Consensus 4 ~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~ 79 (136)
T 1zzo_A 4 AQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP----EVTFVGVAGLDQVPAMQEFVNKYP 79 (136)
T ss_dssp GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHHHHHHHHTT
T ss_pred CCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC----CeEEEEEeCCCCHHHHHHHHHHcC
Confidence 3578887 89999999999999999999999999999999999999999986 389999999999999999999998
Q ss_pred CcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 416 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 416 ~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
...+|+..+....+++.|++.++|++++||++|+++ +
T Consensus 80 ~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~-~ 116 (136)
T 1zzo_A 80 VKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD-V 116 (136)
T ss_dssp CTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE-E
T ss_pred CCceEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE-E
Confidence 558888888888999999999999999999999998 5
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-18 Score=173.03 Aligned_cols=272 Identities=17% Similarity=0.174 Sum_probs=170.2
Q ss_pred CCc-EEEEEecCCCHhhHhhHHH-------HHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHH
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPI-------LAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~-------l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (569)
.++ ++|+||||||+ |++++|. +.++++.++.. ++.++.|+++... .
T Consensus 27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~-~v~~~~Vd~~~~~------------------------~ 80 (350)
T 1sji_A 27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHK-DIGFVMVDAKKEA------------------------K 80 (350)
T ss_dssp TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGS-SEEEEEEETTTTH------------------------H
T ss_pred hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhc-CcEEEEEeCCCCH------------------------H
Confidence 467 99999999999 9999999 89999999765 4999999998763 4
Q ss_pred HHHhcCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCC-C
Q 008336 109 LDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSD-G 187 (569)
Q Consensus 109 l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~-~ 187 (569)
+++.|+|+++||++++ ++|++....| +.+.+.+.+++... ..+.+...+ .
T Consensus 81 l~~~~~v~~~Pt~~~~-~~g~~~~~~G------------~~~~~~l~~~i~~~----------------~~~~~~~l~~~ 131 (350)
T 1sji_A 81 LAKKLGFDEEGSLYVL-KGDRTIEFDG------------EFAADVLVEFLLDL----------------IEDPVEIINSK 131 (350)
T ss_dssp HHHHHTCCSTTEEEEE-ETTEEEEECS------------CCCHHHHHHHHHTT----------------SSCSEEECCSH
T ss_pred HHHhcCCCccceEEEE-ECCcEEEecC------------CCCHHHHHHHHHHh----------------cCCcceeccch
Confidence 8999999999999999 7787543222 34555555544221 011111111 1
Q ss_pred ceeeec-cccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhH
Q 008336 188 RKISVS-DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSR 266 (569)
Q Consensus 188 ~~~~~~-~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~ 266 (569)
+.+... ....+.+.+.|+.++| ....+.+.+++..++.. +.|.... .
T Consensus 132 ~~~~~~~~~~~~~~vv~ff~~~~---~~~~~~~~~~A~~~~~~-----~~f~~~~------------------------~ 179 (350)
T 1sji_A 132 LEVQAFERIEDQIKLIGFFKSEE---SEYYKAFEEAAEHFQPY-----IKFFATF------------------------D 179 (350)
T ss_dssp HHHHHHHHCCSSCEEEEECSCTT---SHHHHHHHHHHHHTTTT-----SEEEEEC------------------------C
T ss_pred HHHHHHhccCCCcEEEEEECCCC---cHHHHHHHHHHHhhccC-----cEEEEEC------------------------C
Confidence 111110 0022345566666654 45567888888887653 3333322 2
Q ss_pred HHHHhhcccCCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCccce-ecC
Q 008336 267 EKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFV-VGK 345 (569)
Q Consensus 267 ~~l~~~f~v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~-~~~ 345 (569)
..+++.|+++ .|+++++.+.++... .|.. .+++.+.+..++..... |-+. ++.
T Consensus 180 ~~~~~~~~v~-~p~i~~~~~~~~~~~--------~y~g--~~~~~~~l~~fi~~~~~---------------p~v~elt~ 233 (350)
T 1sji_A 180 KGVAKKLSLK-MNEVDFYEPFMDEPI--------AIPD--KPYTEEELVEFVKEHQR---------------PTLRRLRP 233 (350)
T ss_dssp HHHHHHHTCC-TTCEEEECTTCSSCE--------ECSS--SSCCHHHHHHHHHHHCC---------------CSEEECCT
T ss_pred HHHHHHcCCC-CCcEEEEeCCCCCce--------ecCC--CCCCHHHHHHHHHHcCc---------------cchhhcCh
Confidence 3577889999 999999986432210 0110 13577788877764221 1111 111
Q ss_pred -CCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCch
Q 008336 346 -NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDA 424 (569)
Q Consensus 346 -~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d 424 (569)
+...+ ...-..+..+|.|..+||+.|....+.|.++++++++. ..+.++.++.+..+
T Consensus 234 ~~~~~~-~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~-~~~~f~~id~~~~~-------------------- 291 (350)
T 1sji_A 234 EDMFET-WEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDN-PDLSIVWIDPDDFP-------------------- 291 (350)
T ss_dssp TTHHHH-HHSCSSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGC-SSCCEEEECGGGCH--------------------
T ss_pred hhHHHH-hcCCCCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCC-CceEEEEECchhhH--------------------
Confidence 11111 11111244455688999999999999999999999851 13677777655332
Q ss_pred hhHHHH----HhcCCC-CccEEEEECC
Q 008336 425 RKASLS----RKFKVS-GIPMLVAIGP 446 (569)
Q Consensus 425 ~~~~l~----~~~~v~-~~Pt~~lid~ 446 (569)
.++ +.||+. ..|++++++.
T Consensus 292 ---~~~~~~~~~~gi~~~~P~~~i~~~ 315 (350)
T 1sji_A 292 ---LLVAYWEKTFKIDLFKPQIGVVNV 315 (350)
T ss_dssp ---HHHHHHHHHCCSCTTSCEEEEEES
T ss_pred ---HHHHHHHhhcCCCccCCcEEEEec
Confidence 234 778887 5899999987
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.6e-19 Score=158.29 Aligned_cols=134 Identities=22% Similarity=0.360 Sum_probs=110.2
Q ss_pred Ccccee-cCCCCceecccCCCCEEEEEEecCCChh-HHhhhHHHHHHHHHHhhc--CCCeEEEEEeCCC---ChhHHHHH
Q 008336 338 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKER--NESLEVVFISSDR---DQTSFDEF 410 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~--~~~~~vv~is~d~---~~~~~~~~ 410 (569)
.|+|.+ +.+|+++++++++||++||+||++||++ |+.++|.|+++++++++. ..++.|++|++|. +++.+++|
T Consensus 3 ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~ 82 (164)
T 2ggt_A 3 GGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANY 82 (164)
T ss_dssp CCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHH
T ss_pred CCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHH
Confidence 488988 9999999999999999999999999998 999999999999999862 1369999999986 46788999
Q ss_pred HhcCCCcccccC---chhhHHHHHhcCCCCcc---------------EEEEECCCCcEEEccchhhHhhcCCCCCCCCHH
Q 008336 411 FKGMPWLALPFG---DARKASLSRKFKVSGIP---------------MLVAIGPSGRTITKEARDMIAVHGAEAYPFTEE 472 (569)
Q Consensus 411 ~~~~~~~~~~~~---~d~~~~l~~~~~v~~~P---------------t~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~ 472 (569)
+++++ +.++++ .+....+++.|+|..+| +++|||++|+++.+..+. ..
T Consensus 83 ~~~~~-~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~-----------~~-- 148 (164)
T 2ggt_A 83 VKEFS-PKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQN-----------KR-- 148 (164)
T ss_dssp HHTTC-SSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETT-----------CC--
T ss_pred HHHcC-CCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCC-----------CC--
Confidence 99876 455554 46667899999999999 899999999999985321 12
Q ss_pred HHHHHHHHhhhhhc
Q 008336 473 RMKEIDGQYNEMAK 486 (569)
Q Consensus 473 ~~~~l~~~l~~l~~ 486 (569)
.++|.+.|+++++
T Consensus 149 -~~~l~~~l~~ll~ 161 (164)
T 2ggt_A 149 -KGEIAASIATHMR 161 (164)
T ss_dssp -HHHHHHHHHHHHG
T ss_pred -HHHHHHHHHHHHH
Confidence 2556666766664
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.2e-19 Score=154.67 Aligned_cols=118 Identities=19% Similarity=0.405 Sum_probs=102.5
Q ss_pred cccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC---CHHHH
Q 008336 12 QSLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE---DDEAF 86 (569)
Q Consensus 12 ~~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~---~~~~~ 86 (569)
...+|.++|+| +.+.+|+.+++++ +|| +||+||++||++|+.++|.|.+++++++..+ +.++.|++|. +.+.+
T Consensus 8 ~~~~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~-~~~v~v~~d~~~~~~~~~ 85 (145)
T 3erw_A 8 EEKQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS-VKLVTVNLVNSEQNQQVV 85 (145)
T ss_dssp ----CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSS-EEEEEEECGGGSSCHHHH
T ss_pred cccCCCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCC-EEEEEEEccCCcCCHHHH
Confidence 34679999999 6678999999999 999 9999999999999999999999999998664 9999999985 88999
Q ss_pred HHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 87 KGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
++|++++++.+..+.+.. ..+.+.|++.++|+++++|++|+++..
T Consensus 86 ~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~~G~i~~~ 130 (145)
T 3erw_A 86 EDFIKANKLTFPIVLDSK--GELMKEYHIITIPTSFLLNEKGEIEKT 130 (145)
T ss_dssp HHHHHHTTCCSCEEECSS--SHHHHHTTCCEESEEEEECTTCCEEEE
T ss_pred HHHHHHcCCceeEEEcCc--hhHHHhcCcCccCeEEEEcCCCcEEEE
Confidence 999999988766655544 368999999999999999999999863
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-19 Score=160.85 Aligned_cols=114 Identities=20% Similarity=0.344 Sum_probs=100.5
Q ss_pred ccccCccCCc-eecCCC--ceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHH
Q 008336 13 SLLSSSARDF-LIRSNG--DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 88 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g--~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~ 88 (569)
..+|.++|+| +.+.+| +.+++++++|| +||+||++||++|+.++|.|.+++++ + +.|++|+++++.+.+++
T Consensus 30 ~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~-v~vv~vs~~d~~~~~~~ 104 (176)
T 3kh7_A 30 ALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ----G-VVIYGINYKDDNAAAIK 104 (176)
T ss_dssp TTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T-CEEEEEEESCCHHHHHH
T ss_pred cccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC----C-CEEEEEeCCCCHHHHHH
Confidence 3689999999 556788 89999999999 99999999999999999999999876 3 99999999999999999
Q ss_pred HHHhCCCccccc-CCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 89 YFSKMPWLAVPF-SDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 89 ~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
|++++++.+..+ .+.. ..+.+.|++.++|+++|||++|+|+..
T Consensus 105 ~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~~G~i~~~ 148 (176)
T 3kh7_A 105 WLNELHNPYLLSISDAD--GTLGLDLGVYGAPETYLIDKQGIIRHK 148 (176)
T ss_dssp HHHHTTCCCSEEEEETT--CHHHHHHTCCSSCEEEEECTTCBEEEE
T ss_pred HHHHcCCCCceEEECCc--chHHHHcCCCCCCeEEEECCCCeEEEE
Confidence 999999876643 3322 478999999999999999999999874
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-19 Score=162.96 Aligned_cols=133 Identities=18% Similarity=0.174 Sum_probs=113.6
Q ss_pred Ccccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 338 DLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
.|+|.+ +.+|+++++++++||++||+|| ++||++|+.++|.|++++++++++ ++.|++|+.| +.+..++|+++++
T Consensus 31 aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~--~~~vv~Vs~D-~~~~~~~~~~~~~ 107 (179)
T 3ixr_A 31 LLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQI--NATVLGVSRD-SVKSHDSFCAKQG 107 (179)
T ss_dssp HHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESC-CHHHHHHHHHHHT
T ss_pred CCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCC-CHHHHHHHHHHcC
Confidence 479988 9999999999999999999999 999999999999999999999876 7999999998 4577889998876
Q ss_pred CcccccCchhhHHHHHhcCCCC------------ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhh
Q 008336 416 WLALPFGDARKASLSRKFKVSG------------IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNE 483 (569)
Q Consensus 416 ~~~~~~~~d~~~~l~~~~~v~~------------~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~ 483 (569)
+.||++.|....+++.|++.. +|++||||++|+|++... + ......++++.+.|++
T Consensus 108 -~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~-------~----~~~~~~~~~il~~l~~ 175 (179)
T 3ixr_A 108 -FTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWR-------Q----VKVPGHAEEVLNKLKA 175 (179)
T ss_dssp -CCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEEC-------S----CCSTTHHHHHHHHHHH
T ss_pred -CceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEc-------C----CCCCCCHHHHHHHHHH
Confidence 678988898899999999864 699999999999998741 1 1234566777777776
Q ss_pred hh
Q 008336 484 MA 485 (569)
Q Consensus 484 l~ 485 (569)
+.
T Consensus 176 l~ 177 (179)
T 3ixr_A 176 HA 177 (179)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=161.04 Aligned_cols=118 Identities=16% Similarity=0.225 Sum_probs=102.7
Q ss_pred ccccCccCCc-eecC--CCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCE------EEEEEeCCC-
Q 008336 13 SLLSSSARDF-LIRS--NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDF------EVIFVSGDE- 81 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~--~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~------~vv~v~~d~- 81 (569)
...|.++|+| +.+. +|+.+++++++|| +||+||++||++|+.++|.|.+++++|++++ + .|++|++|.
T Consensus 31 ~~~g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~-~~~~~~v~~v~v~~d~~ 109 (183)
T 3lwa_A 31 EADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAG-NGDTPGGTVLGINVRDY 109 (183)
T ss_dssp GGGCCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC----CCSEEEEEEECSCC
T ss_pred cccCCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcC-CCccCCcEEEEEECCCC
Confidence 3568999999 5678 9999999999999 9999999999999999999999999998875 7 999999998
Q ss_pred CHHHHHHHHHhCCCcccccCCchhHHHHHHhc---CCCCccEEEEECCCCcEEEc
Q 008336 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELF---KVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~v~~~P~~~lid~~G~i~~~ 133 (569)
+.+.+++|++++++.+..+.+... .+.+.| ++.++|+++|||++|+++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 162 (183)
T 3lwa_A 110 SRDIAQDFVTDNGLDYPSIYDPPF--MTAASLGGVPASVIPTTIVLDKQHRPAAV 162 (183)
T ss_dssp CHHHHHHHHHHTTCCSCEEECTTC--GGGGGTTTCCTTCCSEEEEECTTSCEEEE
T ss_pred CHHHHHHHHHHcCCCccEEECCcc--hHHHHhccCCCCCCCeEEEECCCCcEEEE
Confidence 899999999999987776665543 355555 58999999999999999864
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-19 Score=166.13 Aligned_cols=135 Identities=16% Similarity=0.208 Sum_probs=104.5
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhHHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSFD 408 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~~~ 408 (569)
..|+|.+ +.+|+.+++++++||+|||+||++||++|+.++|.|++++++++++ ++.||+|++| .+.+.++
T Consensus 25 ~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~~~vi~is~d~~~~~e~~~~~~~~ 102 (187)
T 3dwv_A 25 SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ--GFTVLAFPSNQFGGQEPGNEEEIK 102 (187)
T ss_dssp SGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG--TCEEEEEEBCCCSSCSSSBTTHHH
T ss_pred ccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC--CeEEEEEECcccCCCCCCCHHHHH
Confidence 4589988 9999999999999999999999999999999999999999999876 6999999998 3567888
Q ss_pred HHHhcCCCcccccCc--hhhHH----HH--------HhcCCCCcc---EEEEECCCCcEEEccchhhHhhcCCCCCCCCH
Q 008336 409 EFFKGMPWLALPFGD--ARKAS----LS--------RKFKVSGIP---MLVAIGPSGRTITKEARDMIAVHGAEAYPFTE 471 (569)
Q Consensus 409 ~~~~~~~~~~~~~~~--d~~~~----l~--------~~~~v~~~P---t~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~ 471 (569)
+|++..-.+.+|+.. |.... +. ..+++..+| ++||||++|+|+.+..+. .
T Consensus 103 ~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~-----------~-- 169 (187)
T 3dwv_A 103 EFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPG-----------A-- 169 (187)
T ss_dssp HSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTT-----------C--
T ss_pred HHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCC-----------C--
Confidence 888844225666653 22221 11 345667788 999999999999984321 1
Q ss_pred HHHHHHHHHhhhhhcC
Q 008336 472 ERMKEIDGQYNEMAKG 487 (569)
Q Consensus 472 ~~~~~l~~~l~~l~~~ 487 (569)
..++|.+.|++++++
T Consensus 170 -~~~~l~~~i~~lL~~ 184 (187)
T 3dwv_A 170 -SVKDIEEKLIPLLGS 184 (187)
T ss_dssp -CHHHHHHHHHHHC--
T ss_pred -CHHHHHHHHHHHHhc
Confidence 224577778777764
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=159.55 Aligned_cols=114 Identities=20% Similarity=0.255 Sum_probs=100.9
Q ss_pred ccCCcccee-cCCC--CceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 335 VSGDLDFVV-GKNG--GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 335 ~~~~~~f~~-~~~g--~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
....|+|.+ +.+| +.+++++++||++||+||++||++|+.++|.|++++++ ++.|++|++|.+.+.+++|+
T Consensus 33 G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~------~v~vv~vs~~d~~~~~~~~~ 106 (176)
T 3kh7_A 33 GKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ------GVVIYGINYKDDNAAAIKWL 106 (176)
T ss_dssp TSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT------TCEEEEEEESCCHHHHHHHH
T ss_pred CCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC------CCEEEEEeCCCCHHHHHHHH
Confidence 344689988 8888 88999999999999999999999999999999988775 38999999998999999999
Q ss_pred hcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 412 KGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 412 ~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+++++....+..|....+++.|++.++|+++|||++|+|+++.
T Consensus 107 ~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 149 (176)
T 3kh7_A 107 NELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHKI 149 (176)
T ss_dssp HHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEECTTCBEEEEE
T ss_pred HHcCCCCceEEECCcchHHHHcCCCCCCeEEEECCCCeEEEEE
Confidence 9988443335667788999999999999999999999999884
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-20 Score=166.38 Aligned_cols=121 Identities=34% Similarity=0.715 Sum_probs=107.0
Q ss_pred Ccccee-cCCCCceeccc-CCCC-EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 338 DLDFVV-GKNGGKVPVSD-LAGK-TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~-~~gk-~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
.|+|.+ +.+|+.+++++ ++|| ++||+||++||++|+.++|.|+++++++++...++.|++|++|.+.+.+++|++++
T Consensus 4 ~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~ 83 (143)
T 2lus_A 4 IQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMES 83 (143)
Confidence 377877 89999999999 9999 99999999999999999999999999996433469999999998888899998876
Q ss_pred --CCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhh
Q 008336 415 --PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDM 458 (569)
Q Consensus 415 --~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~ 458 (569)
+|..+++..+....+++.|+|.++|+++|||++|+++.++++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 129 (143)
T 2lus_A 84 HGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGE 129 (143)
Confidence 56777777787788999999999999999999999999976543
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=153.56 Aligned_cols=115 Identities=22% Similarity=0.479 Sum_probs=104.5
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC---ChhHHHHHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQTSFDEFF 411 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~---~~~~~~~~~ 411 (569)
...|+|.+ +.+|+.+++++ +||++||+||++||++|+.++|.|.+++++++.. ++.++.|++|. +.+.+++|+
T Consensus 13 ~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~ 89 (145)
T 3erw_A 13 AVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSD--SVKLVTVNLVNSEQNQQVVEDFI 89 (145)
T ss_dssp CSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCS--SEEEEEEECGGGSSCHHHHHHHH
T ss_pred CcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCC--CEEEEEEEccCCcCCHHHHHHHH
Confidence 34688987 99999999999 9999999999999999999999999999999744 59999999986 788999999
Q ss_pred hcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 412 KGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 412 ~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+.++ +.+|+..+....+++.|++.++|+++|+|++|+++.+.
T Consensus 90 ~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 131 (145)
T 3erw_A 90 KANK-LTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTK 131 (145)
T ss_dssp HHTT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEEE
T ss_pred HHcC-CceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEEE
Confidence 9887 57888888888999999999999999999999999874
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=155.57 Aligned_cols=117 Identities=23% Similarity=0.354 Sum_probs=102.2
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-CCHHHHHHH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-EDDEAFKGY 89 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-~~~~~~~~~ 89 (569)
.++|.++|+| +.+.+|+.+++++++|| +||+||++||++|+.++|.|.++++++++.+ +.+++|+.+ ++.+.+++|
T Consensus 2 ~~~G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~-~~vv~v~~~~~~~~~~~~~ 80 (153)
T 2l5o_A 2 SLDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN-FQVLAVAQPIDPIESVRQY 80 (153)
T ss_dssp --CCTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTT-EEEEEEECTTSCHHHHHHH
T ss_pred CCCCCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC-eEEEEEecCCCCHHHHHHH
Confidence 4689999999 56789999999999999 9999999999999999999999999998774 999999986 467889999
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
+++++..+....+.. ..+.+.|++.++|+++++|++|+++.
T Consensus 81 ~~~~~~~~~~~~d~~--~~~~~~~~i~~~P~~~lid~~G~i~~ 121 (153)
T 2l5o_A 81 VKDYGLPFTVMYDAD--KAVGQAFGTQVYPTSVLIGKKGEILK 121 (153)
T ss_dssp HHHTTCCSEEEECSS--CHHHHHHTCCSSSEEEEECSSSCCCE
T ss_pred HHHcCCCceEEcCch--HHHHHHcCCCccCeEEEECCCCcEEE
Confidence 999987765555543 36889999999999999999999875
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-19 Score=159.28 Aligned_cols=134 Identities=17% Similarity=0.231 Sum_probs=112.8
Q ss_pred CCcccee-cCCCCceecccCCCC-EEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGK-TILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
..|+|.+ +.+|+.+++++++|| ++||+|| ++||++|+.++|.|.+++++++++ ++.|++|++| +.+.+++|+++
T Consensus 14 ~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vv~is~d-~~~~~~~~~~~ 90 (160)
T 1xvw_A 14 TAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND--DSAALAISVG-PPPTHKIWATQ 90 (160)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS--SEEEEEEESC-CHHHHHHHHHH
T ss_pred CCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CcEEEEEeCC-CHHHHHHHHHh
Confidence 4589988 999999999999998 9999998 999999999999999999999754 6999999998 56788999998
Q ss_pred CCCcccccCchh--hHHHHHhcCCC----Ccc--EEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhh
Q 008336 414 MPWLALPFGDAR--KASLSRKFKVS----GIP--MLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEM 484 (569)
Q Consensus 414 ~~~~~~~~~~d~--~~~l~~~~~v~----~~P--t~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l 484 (569)
+++ .+|++.|. ...+++.|++. ++| +++|||++|+|+.+..+. ......++++.+.|+++
T Consensus 91 ~~~-~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~----------~~~~~~~~~l~~~l~~l 158 (160)
T 1xvw_A 91 SGF-TFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQ----------PGEVRDQRLWTDALAAL 158 (160)
T ss_dssp HTC-CSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECC----------TTCCCCHHHHHHHHHHT
T ss_pred cCC-CceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecC----------CCCCCCHHHHHHHHHHh
Confidence 874 78888874 78899999999 999 999999999999985432 11233566677776654
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-19 Score=159.85 Aligned_cols=114 Identities=24% Similarity=0.432 Sum_probs=103.9
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC----------
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD---------- 80 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d---------- 80 (569)
..+|.++|+| +.+.+|+.+++++++|| +||+||++||++|+.++|.|.+++++++ ++.|++|++|
T Consensus 11 ~~~g~~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~---~v~vv~i~~d~~~~~~~~~~ 87 (165)
T 3ha9_A 11 EEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR---EISVIAIDFWTAEALKALGL 87 (165)
T ss_dssp HHHHHHHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEEEECCSHHHHHHHTC
T ss_pred ccccCcCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC---CcEEEEEEeccccccccccc
Confidence 3679999999 66789999999999999 9999999999999999999999999987 4999999999
Q ss_pred --------CCHHHHHHHHHhCCC-cccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 81 --------EDDEAFKGYFSKMPW-LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 81 --------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+.+.+++|++++++ .+..+.+ ...+.+.|++.++|+++|||++|+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~v~~~P~~~lid~~G~i~~ 145 (165)
T 3ha9_A 88 NKPGYPPPDTPEMFRKFIANYGDPSWIMVMD---DGSLVEKFNVRSIDYIVIMDKSSNVLY 145 (165)
T ss_dssp CSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC---CSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred ccccCCCCCCHHHHHHHHHHcCCCCeeEEeC---hHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence 799999999999988 6655555 347999999999999999999999987
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-20 Score=169.23 Aligned_cols=115 Identities=27% Similarity=0.450 Sum_probs=102.9
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHH-HHHHHh-hcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLID-AYKKIK-ERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~-l~~~~~-~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
..|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+ ++++++ .. ++.|++|++|.+.+.+++|.++
T Consensus 12 ~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~--~~~vv~v~~d~~~~~~~~~~~~ 89 (159)
T 2ls5_A 12 MAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNA--DFALIGIDRDEPLEKVLAFAKS 89 (159)
Confidence 3578887 89999999999999999999999999999999999998 888887 33 6999999999877788899888
Q ss_pred CCCcccccCchhhHHHHHhcC--CCCccEEEEECCCCcEEEcc
Q 008336 414 MPWLALPFGDARKASLSRKFK--VSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 414 ~~~~~~~~~~d~~~~l~~~~~--v~~~Pt~~lid~~G~i~~~~ 454 (569)
++ +.+|++.|....+.+.|+ +.++|+++|||++|+++.+.
T Consensus 90 ~~-~~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~ 131 (159)
T 2ls5_A 90 TG-VTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLT 131 (159)
Confidence 87 588999898999999999 56699999999999999874
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.6e-19 Score=160.00 Aligned_cols=138 Identities=20% Similarity=0.294 Sum_probs=109.8
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCCh-hHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC---CChhHHHHHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERNESLEVVFISSD---RDQTSFDEFF 411 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d---~~~~~~~~~~ 411 (569)
..|+|.+ +.+|+.+++++++||++||+||++||+ +|+.++|.|.+++++++++..++.||+|++| .+++.+++|+
T Consensus 12 ~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~ 91 (174)
T 1xzo_A 12 EVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFA 91 (174)
T ss_dssp ECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHH
T ss_pred ccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHH
Confidence 3589988 999999999999999999999999999 9999999999999999876335999999998 4678899999
Q ss_pred hcCCCccc---ccCchhhHHHHHh----------------cCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHH
Q 008336 412 KGMPWLAL---PFGDARKASLSRK----------------FKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEE 472 (569)
Q Consensus 412 ~~~~~~~~---~~~~d~~~~l~~~----------------~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~ 472 (569)
++++ +.+ +++.|.+..+.+. |++..+|+++|||++|+|+.+..+. . ..
T Consensus 92 ~~~~-~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~-------~-----~~ 158 (174)
T 1xzo_A 92 ANYP-LSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGV-------E-----NT 158 (174)
T ss_dssp TTSC-CCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESS-------S-----SC
T ss_pred HHcC-CCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCC-------C-----CC
Confidence 9887 344 6666655554443 3567899999999999999984321 1 11
Q ss_pred HHHHHHHHhhhhhcC
Q 008336 473 RMKEIDGQYNEMAKG 487 (569)
Q Consensus 473 ~~~~l~~~l~~l~~~ 487 (569)
..++|.+.|+++++.
T Consensus 159 ~~~~l~~~l~~ll~~ 173 (174)
T 1xzo_A 159 PYDDIISDVKSASTL 173 (174)
T ss_dssp CHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhc
Confidence 245677777777653
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=156.24 Aligned_cols=116 Identities=21% Similarity=0.288 Sum_probs=104.0
Q ss_pred cccCccCCce--e-cCCCceeecCCCCCc-EEEEEec-CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHH
Q 008336 14 LLSSSARDFL--I-RSNGDQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 88 (569)
Q Consensus 14 ~~g~~~pdf~--~-~~~g~~v~l~~~~gk-vlv~F~a-~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~ 88 (569)
.+|.++|+|. + +.+|+++++++++|| ++|+||+ +||++|+.++|.|.+++++|++++ +.|++|++| +.+.+++
T Consensus 8 ~~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~-~~vv~vs~d-~~~~~~~ 85 (163)
T 3gkn_A 8 VLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAG-AKILGVSRD-SVKSHDN 85 (163)
T ss_dssp CCCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTT-CEEEEEESS-CHHHHHH
T ss_pred ccCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCC-CEEEEEeCC-CHHHHHH
Confidence 5799999996 5 579999999999999 9999998 999999999999999999999875 999999998 7889999
Q ss_pred HHHhCCCcccccCCchhHHHHHHhcCCCC------------ccEEEEECCCCcEEEc
Q 008336 89 YFSKMPWLAVPFSDSETRDKLDELFKVMG------------IPHLVILDENGKVLSD 133 (569)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~------------~P~~~lid~~G~i~~~ 133 (569)
|+++++..+..+.|.. ..+.+.|++.. +|+++|||++|+|+..
T Consensus 86 ~~~~~~~~~~~~~d~~--~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~ 140 (163)
T 3gkn_A 86 FCAKQGFAFPLVSDGD--EALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQA 140 (163)
T ss_dssp HHHHHCCSSCEEECTT--CHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEE
T ss_pred HHHHhCCCceEEECCc--HHHHHHhCCccccccccccccCcceEEEEECCCCeEEEE
Confidence 9999887766666544 37889999987 9999999999999874
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=154.50 Aligned_cols=132 Identities=20% Similarity=0.330 Sum_probs=112.2
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC--CCChhHHHHHHhc
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS--DRDQTSFDEFFKG 413 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~--d~~~~~~~~~~~~ 413 (569)
..|+|.+ +.+|+.+++++++ |++||+||++||++|+.++|.|.++++++ + +.|++|++ +.+.+.+++|+++
T Consensus 10 ~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~---v~~v~v~~d~~~~~~~~~~~~~~ 83 (154)
T 3ia1_A 10 PLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET--G---VPFYVISREPRDTREVVLEYMKT 83 (154)
T ss_dssp ECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH--C---CCEEEEECCTTCCHHHHHHHHTT
T ss_pred cCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc--C---CeEEEEeCCCcccHHHHHHHHHH
Confidence 4588988 9999999999999 99999999999999999999999999999 3 89999999 5678899999999
Q ss_pred CCCcccccCch---hhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 008336 414 MPWLALPFGDA---RKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 489 (569)
Q Consensus 414 ~~~~~~~~~~d---~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~ 489 (569)
++ +.+|+..+ ....+++.|++.++|+++|||++|+++.+..+. . ..++|.+.|+++....+
T Consensus 84 ~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----------~---~~~~l~~~l~~~~~~~~ 147 (154)
T 3ia1_A 84 YP-RFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGR-----------A---GREALLDALLLAGADLE 147 (154)
T ss_dssp CT-TEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEEESB-----------C---CHHHHHHHHHHTTCCC-
T ss_pred cC-CCcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEEcCC-----------C---CHHHHHHHHHhccCccc
Confidence 98 47787776 778999999999999999999999999884321 1 23567777777766554
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=159.71 Aligned_cols=117 Identities=12% Similarity=0.216 Sum_probs=103.9
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDD 83 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~ 83 (569)
-.+|.++|+| +.+.+|+.+++++++|| +||+||++||++|+.++|.|.+++++++++ +.|++|++| ++.
T Consensus 7 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~v~v~~d~~~~~~~d~~ 84 (188)
T 2cvb_A 7 LPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK--VAFVGINANDYEKYPEDAP 84 (188)
T ss_dssp CCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT--EEEEEEECCCTTTCGGGSH
T ss_pred CCCCCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC--eEEEEEEcCccccccccCH
Confidence 3579999999 56789999999999999 999999999999999999999999999864 999999996 477
Q ss_pred HHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 84 EAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+.+++|++++++.+..+.+.. ..+.+.|++.++|+++|||++|+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~~G~i~~~ 132 (188)
T 2cvb_A 85 EKMAAFAEEHGIFFPYLLDET--QEVAKAYRALRTPEVFLFDERRLLRYH 132 (188)
T ss_dssp HHHHHHHHHHTCCSCEEECSS--SHHHHHTTCCEESEEEEECTTCBEEEE
T ss_pred HHHHHHHHHhCCCceEEECCc--chHHHHcCCCCCCeEEEECCCCcEEEE
Confidence 899999999887666555544 368899999999999999999999986
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.5e-19 Score=154.85 Aligned_cols=133 Identities=18% Similarity=0.221 Sum_probs=111.9
Q ss_pred CCcccee---cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-----ChhHHH
Q 008336 337 GDLDFVV---GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-----DQTSFD 408 (569)
Q Consensus 337 ~~~~f~~---~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-----~~~~~~ 408 (569)
..|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++++++ +.+++|++|. +.+.++
T Consensus 6 ~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~~~~~~~~~~~~~~~ 82 (148)
T 2b5x_A 6 PMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPGKIK 82 (148)
T ss_dssp BCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHHHHH
T ss_pred CCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEEcCCCccccCHHHHH
Confidence 3577765 6799999999999999999999999999999999999999999764 9999999886 678899
Q ss_pred HHHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcC
Q 008336 409 EFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 487 (569)
Q Consensus 409 ~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~ 487 (569)
+++++++ +.+|+..+....+++.|+|.++|+++++|++|+++.+..+. . ..++|.+.|+++++.
T Consensus 83 ~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----------~---~~~~l~~~l~~~l~~ 146 (148)
T 2b5x_A 83 ETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGG-----------S---GMKMLEKRVNRVLAE 146 (148)
T ss_dssp HHHHHTT-CCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESC-----------S---TTHHHHHHHHHHHTT
T ss_pred HHHHHcC-CCcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCC-----------C---CHHHHHHHHHHHHhc
Confidence 9999887 57888888888999999999999999999999999874321 1 124566667766643
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=156.79 Aligned_cols=116 Identities=22% Similarity=0.351 Sum_probs=99.9
Q ss_pred cccee-cCCCCceecccCCCCEEEEEEecCCChh-HHhhhHHHHHHHHHHhhc--CCCeEEEEEeCCC---ChhHHHHHH
Q 008336 339 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKER--NESLEVVFISSDR---DQTSFDEFF 411 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~--~~~~~vv~is~d~---~~~~~~~~~ 411 (569)
|+|.+ +.+|+.+++++++||++||+||++||++ |+.++|.|+++++++++. ..++.||+|++|. +++.+++|+
T Consensus 7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~ 86 (171)
T 2rli_A 7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYV 86 (171)
T ss_dssp SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHH
T ss_pred CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHH
Confidence 88988 9999999999999999999999999998 999999999999999752 2369999999983 578899999
Q ss_pred hcCCCcccccCc---hhhHHHHHhcCCCCcc---------------EEEEECCCCcEEEccc
Q 008336 412 KGMPWLALPFGD---ARKASLSRKFKVSGIP---------------MLVAIGPSGRTITKEA 455 (569)
Q Consensus 412 ~~~~~~~~~~~~---d~~~~l~~~~~v~~~P---------------t~~lid~~G~i~~~~~ 455 (569)
++++ +.++++. +....+++.|+|..+| +++|||++|+|+.+..
T Consensus 87 ~~~~-~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 147 (171)
T 2rli_A 87 QDFH-PRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYG 147 (171)
T ss_dssp HTTC-TTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEE
T ss_pred HHcC-CCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEEC
Confidence 9886 4555544 3445789999999888 9999999999999843
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=153.46 Aligned_cols=115 Identities=19% Similarity=0.263 Sum_probs=101.6
Q ss_pred ccCccCCce---ecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-----CHHH
Q 008336 15 LSSSARDFL---IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-----DDEA 85 (569)
Q Consensus 15 ~g~~~pdf~---~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-----~~~~ 85 (569)
+|.++|+|. .+.+|+.+++++++|| ++|+||++||++|+.++|.|.+++++++++ +.+++|+++. +.+.
T Consensus 3 ~g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~~v~~~~~~~~~~~~~ 80 (148)
T 2b5x_A 3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ--LNVVAVHMPRSEDDLDPGK 80 (148)
T ss_dssp TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--SEEEEEECCCSTTTSSHHH
T ss_pred CCCCCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC--cEEEEEEcCCCccccCHHH
Confidence 699999994 3679999999999999 999999999999999999999999999754 9999999886 7889
Q ss_pred HHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+++|++++++.+..+.+.. ..+.+.|++.++|+++++|++|+++..
T Consensus 81 ~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~~G~i~~~ 126 (148)
T 2b5x_A 81 IKETAAEHDITQPIFVDSD--HALTDAFENEYVPAYYVFDKTGQLRHF 126 (148)
T ss_dssp HHHHHHHTTCCSCEEECSS--CHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred HHHHHHHcCCCcceEECCc--hhHHHHhCCCCCCEEEEECCCCcEEEE
Confidence 9999999987665555443 368899999999999999999999874
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=162.71 Aligned_cols=145 Identities=12% Similarity=0.219 Sum_probs=116.0
Q ss_pred CCcccee--cCCCCceecccCCCC-EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhH
Q 008336 337 GDLDFVV--GKNGGKVPVSDLAGK-TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTS 406 (569)
Q Consensus 337 ~~~~f~~--~~~g~~v~l~~~~gk-~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~ 406 (569)
..|+|.+ +.+|+.+++++++|| ++||+||++||++|+.++|.|++++++++++ ++.|++|++| .+.+.
T Consensus 23 ~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~v~~d~~~~~~~d~~~~ 100 (196)
T 2ywi_A 23 QAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPK--GVSFVAINSNDAEQYPEDSPEN 100 (196)
T ss_dssp BCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGG--TCEEEEEECSCTTTCGGGSHHH
T ss_pred cCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhC--CcEEEEEECCccccccccCHHH
Confidence 3578865 689999999999998 5999999999999999999999999999875 6999999997 46788
Q ss_pred HHHHHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhc
Q 008336 407 FDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 486 (569)
Q Consensus 407 ~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~ 486 (569)
+++|+++++ +.+|+..|....+++.|++.++|+++|||++|++++++....... | + ......++|.+.|+++++
T Consensus 101 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~-~---~-~g~~~~~~l~~~i~~ll~ 174 (196)
T 2ywi_A 101 MKKVAEELG-YPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRP-N---N-GIPVTGESIRAALDALLE 174 (196)
T ss_dssp HHHHHHHHT-CCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEECSSSCCT-T---T-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEccccCcccc-c---c-cCccCHHHHHHHHHHHHc
Confidence 999999887 578888888889999999999999999999999998843211000 0 0 001123567777777776
Q ss_pred CCC
Q 008336 487 GWP 489 (569)
Q Consensus 487 ~~~ 489 (569)
+.+
T Consensus 175 ~~~ 177 (196)
T 2ywi_A 175 GRP 177 (196)
T ss_dssp TCC
T ss_pred CCC
Confidence 544
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-18 Score=147.60 Aligned_cols=111 Identities=24% Similarity=0.418 Sum_probs=99.1
Q ss_pred cCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhC
Q 008336 16 SSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (569)
Q Consensus 16 g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~ 93 (569)
|.++|+| +.+.+|+.+++++++|| ++|+||++||++|+.++|.|.+++++++ ++.++.|+++.+.+.+++|++++
T Consensus 2 ~~~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~ 78 (136)
T 1zzo_A 2 VPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP---EVTFVGVAGLDQVPAMQEFVNKY 78 (136)
T ss_dssp CCGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHT
T ss_pred CCCCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC---CeEEEEEeCCCCHHHHHHHHHHc
Confidence 6789999 56789999999999999 9999999999999999999999999986 49999999999999999999999
Q ss_pred CC-cccccCCchhHHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 94 PW-LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 94 ~~-~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 131 (569)
++ .+..+.+.. ..+.+.|++.++|+++++|++|+++
T Consensus 79 ~~~~~~~~~d~~--~~~~~~~~i~~~P~~~~id~~g~i~ 115 (136)
T 1zzo_A 79 PVKTFTQLADTD--GSVWANFGVTQQPAYAFVDPHGNVD 115 (136)
T ss_dssp TCTTSEEEECTT--CHHHHHTTCCSSSEEEEECTTCCEE
T ss_pred CCCceEEEEcCC--cHHHHHcCCCCCceEEEECCCCCEE
Confidence 88 544444433 4688999999999999999999987
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=158.95 Aligned_cols=121 Identities=18% Similarity=0.178 Sum_probs=96.6
Q ss_pred cccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-------C
Q 008336 12 QSLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------D 82 (569)
Q Consensus 12 ~~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-------~ 82 (569)
.+..|.++|+| +.+.+|+.+++++++|| +||+|||+|||+|+.++|.|.+++++|++++ +.|++|++|. +
T Consensus 11 ~~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~-~~vi~is~d~~~~~~~d~ 89 (180)
T 3kij_A 11 LKPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSH-FSVLAFPCNQFGESEPRP 89 (180)
T ss_dssp CCCCCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTS-EEEEEEECCCSTTCCCSC
T ss_pred hcCCcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCC-eEEEEEECCccccCCCCC
Confidence 44679999999 66789999999999999 9999999999999999999999999999875 9999999875 8
Q ss_pred HHHHHHHHHh-CCCcccccCC----chhHHHHHHhc--CCCCccE----EEEECCCCcEEEc
Q 008336 83 DEAFKGYFSK-MPWLAVPFSD----SETRDKLDELF--KVMGIPH----LVILDENGKVLSD 133 (569)
Q Consensus 83 ~~~~~~~~~~-~~~~~~~~~~----~~~~~~l~~~~--~v~~~P~----~~lid~~G~i~~~ 133 (569)
.+.+++|+++ ++..+..+.+ ......+...+ .+.++|+ ++|||++|+|+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~ 151 (180)
T 3kij_A 90 SKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF 151 (180)
T ss_dssp HHHHHHHHHHHHCCCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHHHhcCCCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEE
Confidence 8999999998 7766554321 11111111111 1246788 9999999999875
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-19 Score=165.88 Aligned_cols=137 Identities=16% Similarity=0.197 Sum_probs=112.9
Q ss_pred cCCcccee-cC--CC--CceecccC-CCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHH
Q 008336 336 SGDLDFVV-GK--NG--GKVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 408 (569)
Q Consensus 336 ~~~~~f~~-~~--~g--~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~ 408 (569)
...|+|.+ +. +| +.++++++ +||++||+|| ++||++|+.++|.|++++++|+++ +++||+|++| +.+..+
T Consensus 29 ~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~--~v~vv~Is~D-~~~~~~ 105 (221)
T 2c0d_A 29 KKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENK--NVELLGISVD-SVYSHL 105 (221)
T ss_dssp SBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHT--TEEEEEEESS-CHHHHH
T ss_pred CCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHHHH
Confidence 34689988 77 89 99999999 9999999999 999999999999999999999865 6999999997 456788
Q ss_pred HHHhcCC------CcccccCchhhHHHHHhcCC-----CCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHH
Q 008336 409 EFFKGMP------WLALPFGDARKASLSRKFKV-----SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 477 (569)
Q Consensus 409 ~~~~~~~------~~~~~~~~d~~~~l~~~~~v-----~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 477 (569)
+|++.+. .+.+|++.|....+++.|++ ..+|++||||++|+|+++..+.. ..+...+++
T Consensus 106 ~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~----------~~~~~~~el 175 (221)
T 2c0d_A 106 AWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQTVNDL----------PIGRNVQEV 175 (221)
T ss_dssp HHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECT----------TCCCCHHHH
T ss_pred HHHHHhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEEECCCCeEEEEEecCC----------CCCCCHHHH
Confidence 8988771 46788888888899999999 47999999999999999853321 012344566
Q ss_pred HHHhhhhh
Q 008336 478 DGQYNEMA 485 (569)
Q Consensus 478 ~~~l~~l~ 485 (569)
.+.|+.+.
T Consensus 176 l~~l~~L~ 183 (221)
T 2c0d_A 176 LRTIDSII 183 (221)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666654
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-18 Score=147.51 Aligned_cols=110 Identities=21% Similarity=0.323 Sum_probs=99.3
Q ss_pred CccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCC
Q 008336 17 SSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMP 94 (569)
Q Consensus 17 ~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~ 94 (569)
.++|+| +.+.+|+.+++++++|| ++|+||++||++|+.++|.|.+++++++ ++.++.|+++.+.+.+++|+++++
T Consensus 2 ~~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~ 78 (136)
T 1lu4_A 2 DERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKYN 78 (136)
T ss_dssp GGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHHT
T ss_pred CCCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC---CcEEEEEEcCCCHHHHHHHHHHcC
Confidence 468999 56789999999999999 9999999999999999999999999986 499999999999999999999998
Q ss_pred CcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 95 WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 131 (569)
+.+..+.+.. ..+.+.|++.++|+++++|++|+++
T Consensus 79 ~~~~~~~d~~--~~~~~~~~i~~~P~~~lid~~G~i~ 113 (136)
T 1lu4_A 79 LNFTNLNDAD--GVIWARYNVPWQPAFVFYRADGTST 113 (136)
T ss_dssp CCSEEEECTT--SHHHHHTTCCSSSEEEEECTTSCEE
T ss_pred CCceEEECCc--hhHHHhcCCCCCCEEEEECCCCcEE
Confidence 8766655544 3688999999999999999999997
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=155.11 Aligned_cols=115 Identities=22% Similarity=0.409 Sum_probs=101.0
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
..+|.++|+| +.+.+|+.+++++++|| ++|+||++||++|+.++|.|.++++++++. ++.+++|+.|. .+++++
T Consensus 15 ~~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~---~~~~~~ 90 (158)
T 3hdc_A 15 VRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG-DLVVLAVNVEK---RFPEKY 90 (158)
T ss_dssp CCTTSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTT-SEEEEEEECSS---SCCGGG
T ss_pred cCCCCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccC-CeEEEEEeCCH---HHHHHH
Confidence 3579999999 66789999999999999 999999999999999999999999999876 49999999987 466778
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+++++.+..+.+.. ..+.+.|++.++|+++|+|++|+++..
T Consensus 91 ~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~~G~i~~~ 131 (158)
T 3hdc_A 91 RRAPVSFNFLSDAT--GQVQQRYGANRLPDTFIVDRKGIIRQR 131 (158)
T ss_dssp GGCCCSCEEEECTT--SHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred HHcCCCceEEECch--HHHHHHhCCCCcceEEEEcCCCCEEEE
Confidence 88887766555544 368999999999999999999999874
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=160.83 Aligned_cols=136 Identities=21% Similarity=0.249 Sum_probs=115.0
Q ss_pred CCcccee-cC--CC--CceecccC-CCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHH
Q 008336 337 GDLDFVV-GK--NG--GKVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 409 (569)
Q Consensus 337 ~~~~f~~-~~--~g--~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~ 409 (569)
..|+|.+ +. +| +.++++++ +||++||+|| ++||++|+.++|.|.+++++++++ ++.||+|++| +.+..++
T Consensus 5 ~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~Is~d-~~~~~~~ 81 (192)
T 2h01_A 5 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER--NVELLGCSVD-SKFTHLA 81 (192)
T ss_dssp BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT--TEEEEEEESS-CHHHHHH
T ss_pred cCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEEeC-CHHHHHH
Confidence 4589988 77 89 99999999 9999999999 999999999999999999999865 6999999998 4578888
Q ss_pred HHhcCC------CcccccCchhhHHHHHhcCCC-----CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHH
Q 008336 410 FFKGMP------WLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEID 478 (569)
Q Consensus 410 ~~~~~~------~~~~~~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~ 478 (569)
|.+.+. .+.+|++.|....+++.|++. .+|+++|||++|+|+++..+.. ..+...+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~----------~~~~~~~~l~ 151 (192)
T 2h01_A 82 WKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNL----------ALGRSVDEIL 151 (192)
T ss_dssp HHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGG----------SSGGGHHHHH
T ss_pred HHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCC----------CCCCCHHHHH
Confidence 988772 477898888888999999999 8999999999999999854321 1234566777
Q ss_pred HHhhhhh
Q 008336 479 GQYNEMA 485 (569)
Q Consensus 479 ~~l~~l~ 485 (569)
+.|+.+.
T Consensus 152 ~~l~~l~ 158 (192)
T 2h01_A 152 RLIDALQ 158 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777665
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=156.78 Aligned_cols=113 Identities=19% Similarity=0.431 Sum_probs=100.9
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
..|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.++++++++. ++.++.|+.|. .+++++++++
T Consensus 20 ~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~v~~d~---~~~~~~~~~~ 94 (158)
T 3hdc_A 20 LAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG--DLVVLAVNVEK---RFPEKYRRAP 94 (158)
T ss_dssp BCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTT--SEEEEEEECSS---SCCGGGGGCC
T ss_pred cCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccC--CeEEEEEeCCH---HHHHHHHHcC
Confidence 4589988 9999999999999999999999999999999999999999999854 69999999986 4556777776
Q ss_pred CcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccc
Q 008336 416 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 416 ~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
+.+++..|....+++.|+|.++|+++|||++|+|+.+..
T Consensus 95 -~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 133 (158)
T 3hdc_A 95 -VSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVT 133 (158)
T ss_dssp -CSCEEEECTTSHHHHHTTCCSSSEEEEECTTSBEEEEEE
T ss_pred -CCceEEECchHHHHHHhCCCCcceEEEEcCCCCEEEEEe
Confidence 568888888889999999999999999999999999854
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.9e-19 Score=160.36 Aligned_cols=114 Identities=17% Similarity=0.272 Sum_probs=86.0
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhHHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSFD 408 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~~~ 408 (569)
..|+|.+ +.+|+++++++++||++||+||++||++|+ ++|.|++++++++++ ++.|++|++| .+.+.++
T Consensus 11 ~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~d~~~~~~ 87 (171)
T 3cmi_A 11 EFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDE--GFTIIGFPCNQFGHQEPGSDEEIA 87 (171)
T ss_dssp GGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG--TEEEEEEEECSCC-----------
T ss_pred heeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccC--CeEEEEEECcccCCCCCCCHHHHH
Confidence 3588988 999999999999999999999999999999 999999999999876 6999999986 4556788
Q ss_pred HHH-hcCCCcccccCchhh--HH----H-----HHhcCCCCcc------EEEEECCCCcEEEcc
Q 008336 409 EFF-KGMPWLALPFGDARK--AS----L-----SRKFKVSGIP------MLVAIGPSGRTITKE 454 (569)
Q Consensus 409 ~~~-~~~~~~~~~~~~d~~--~~----l-----~~~~~v~~~P------t~~lid~~G~i~~~~ 454 (569)
+|+ ++++ +.+|++.|.+ .. + .+.|++.++| +++|||++|+|+.+.
T Consensus 88 ~~~~~~~~-~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~ 150 (171)
T 3cmi_A 88 QFCQLNYG-VTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERY 150 (171)
T ss_dssp -------C-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEE
T ss_pred HHHHhccC-CCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEe
Confidence 888 7665 5677665321 11 1 2468999999 999999999999984
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=160.67 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=92.8
Q ss_pred CCcccee-cCC-CCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHH
Q 008336 337 GDLDFVV-GKN-GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSF 407 (569)
Q Consensus 337 ~~~~f~~-~~~-g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~ 407 (569)
..|+|.+ +.+ |+.+++++++||+|||+|||+|||+|+.++|.|++++++++++ ++.||+|++|. +.+.+
T Consensus 25 ~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~--g~~vv~v~~d~~~~~e~d~~~~i 102 (208)
T 2f8a_A 25 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR--GLVVLGFPCNQFGHQENAKNEEI 102 (208)
T ss_dssp CGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTTTCSCHHHH
T ss_pred ccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC--CeEEEEEECCcccccCCCCHHHH
Confidence 4588988 888 9999999999999999999999999999999999999999876 69999999872 45778
Q ss_pred HHHHh------cCCCcccccCchh--h----H----HHHHhc-------------------------CCCCccEEEEECC
Q 008336 408 DEFFK------GMPWLALPFGDAR--K----A----SLSRKF-------------------------KVSGIPMLVAIGP 446 (569)
Q Consensus 408 ~~~~~------~~~~~~~~~~~d~--~----~----~l~~~~-------------------------~v~~~Pt~~lid~ 446 (569)
++|++ +++ +.||++.+. + . .+...+ ++..+|++||||+
T Consensus 103 ~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~ 181 (208)
T 2f8a_A 103 LNSLKYVRPGGGFE-PNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGP 181 (208)
T ss_dssp HHHHHHTSSCTTCC-CSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECT
T ss_pred HHHHHhcccccccc-cceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcC
Confidence 88987 554 567765321 0 0 111111 3667799999999
Q ss_pred CCcEEEccc
Q 008336 447 SGRTITKEA 455 (569)
Q Consensus 447 ~G~i~~~~~ 455 (569)
+|+|+.+..
T Consensus 182 ~G~i~~~~~ 190 (208)
T 2f8a_A 182 DGVPLRRYS 190 (208)
T ss_dssp TSCEEEEEC
T ss_pred CCcEEEEeC
Confidence 999999853
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-18 Score=153.26 Aligned_cols=119 Identities=20% Similarity=0.259 Sum_probs=103.8
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc--EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK--IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 88 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk--vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~ 88 (569)
-.+|.++|+| +.+.+|+.+++++++|| ++|+|| ++||++|+.++|.|.++++++++.+ +.|++|++| +.+.+++
T Consensus 9 ~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~-~~vv~is~d-~~~~~~~ 86 (160)
T 1xvw_A 9 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD-SAALAISVG-PPPTHKI 86 (160)
T ss_dssp CCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS-EEEEEEESC-CHHHHHH
T ss_pred CCCCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC-cEEEEEeCC-CHHHHHH
Confidence 4579999999 56789999999999997 999998 9999999999999999999998764 999999998 5788999
Q ss_pred HHHhCCCcccccCCchhHHHHHHhcCCC----Ccc--EEEEECCCCcEEEc
Q 008336 89 YFSKMPWLAVPFSDSETRDKLDELFKVM----GIP--HLVILDENGKVLSD 133 (569)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~----~~P--~~~lid~~G~i~~~ 133 (569)
|++++++.+..+.+......+.+.|++. ++| +++|+|++|+|+..
T Consensus 87 ~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~ 137 (160)
T 1xvw_A 87 WATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFA 137 (160)
T ss_dssp HHHHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEE
T ss_pred HHHhcCCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEE
Confidence 9999988766666641234688999998 999 99999999999875
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-18 Score=155.65 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=94.9
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-------CHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDE 84 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-------~~~ 84 (569)
.+|.++|+| +.+.+|+.+++++++|| +||+||++||++|+.++|.|++++++|++++ +.|++|++|. +.+
T Consensus 6 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~-~~vv~v~~d~~~~~~~~~~~ 84 (169)
T 2v1m_A 6 KSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKG-LRILAFPCNQFGGQEPWAEA 84 (169)
T ss_dssp -CCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECCCSTTCCCSCHH
T ss_pred cCCcccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCC-eEEEEEECCccCCCCCCCHH
Confidence 479999999 56789999999999999 9999999999999999999999999998875 9999999873 578
Q ss_pred HHHHH-HHhCCCcccccC--CchhH--HHHH-----HhcC-----CCCccEEEEECCCCcEEEc
Q 008336 85 AFKGY-FSKMPWLAVPFS--DSETR--DKLD-----ELFK-----VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 85 ~~~~~-~~~~~~~~~~~~--~~~~~--~~l~-----~~~~-----v~~~P~~~lid~~G~i~~~ 133 (569)
.+++| .++++..+..+. +.... ..+. ..++ +.++|+++|||++|+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 148 (169)
T 2v1m_A 85 EIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKR 148 (169)
T ss_dssp HHHHHHHHHHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHhcCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEE
Confidence 88999 488776555443 22211 1111 1125 5567999999999999875
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=156.94 Aligned_cols=133 Identities=13% Similarity=0.087 Sum_probs=108.7
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEec-CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
..|+|.+ +.+|+.+++++++||++||+||+ +||++|+.++|.|+++++++ . ++.|++|++|. ++..++|.+++
T Consensus 21 ~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~---~v~vv~is~d~-~~~~~~~~~~~ 95 (163)
T 1psq_A 21 KALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-D---NTVVLTVSMDL-PFAQKRWCGAE 95 (163)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T---TEEEEEEESSC-HHHHHHHHHHH
T ss_pred CCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-C---CcEEEEEECCC-HHHHHHHHHhc
Confidence 4589988 99999999999999999999995 99999999999999999988 3 59999999984 57788898887
Q ss_pred CCcccccCch-hhHHHHHhcCCC----C--ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhh
Q 008336 415 PWLALPFGDA-RKASLSRKFKVS----G--IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNE 483 (569)
Q Consensus 415 ~~~~~~~~~d-~~~~l~~~~~v~----~--~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~ 483 (569)
+.-.+|++.| ....+++.|++. + .|+++|||++|+|+++..+.. +....+.+++.+.|++
T Consensus 96 ~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~---------~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 96 GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDN---------INSEPNFEAAIAAAKA 162 (163)
T ss_dssp TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSB---------TTSCCCHHHHHHHHHH
T ss_pred CCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecCC---------cCCCCCHHHHHHHHHh
Confidence 7327888888 788999999997 4 399999999999999864321 1233345566666654
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=160.46 Aligned_cols=179 Identities=16% Similarity=0.202 Sum_probs=116.7
Q ss_pred cEEEEEEecCC--cccchhhhHHHHHHHHHHhc-CCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcc
Q 008336 198 KTIGLYFSMSS--YKASAEFTPRLVEVYEKLKG-KGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (569)
Q Consensus 198 k~v~l~f~~~~--~~~c~~~~~~~~~~~~~~~~-~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~ 274 (569)
++|.+.|+++| |++|+.+.+.+.++++.... ++.+ .+.|+.+|.++ .+.+++.|+
T Consensus 26 ~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~-~v~~~~vd~d~---------------------~~~~~~~~g 83 (243)
T 2hls_A 26 NPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGK-LLKLNVYYRES---------------------DSDKFSEFK 83 (243)
T ss_dssp SCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEE-SEEEEEEETTT---------------------THHHHHHTT
T ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCc-eeEEEEecCCc---------------------CHHHHHhcC
Confidence 46777788888 99999999999998876421 2211 13344444332 457899999
Q ss_pred cCCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhh-hhhhhhhccCCccceecCCCCceecc
Q 008336 275 LSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEES-QTLESVLVSGDLDFVVGKNGGKVPVS 353 (569)
Q Consensus 275 v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~f~~~~~g~~v~l~ 353 (569)
|+++||+++++ | .. ...|.. +...+..+.......... ..+.. + ..-.+.
T Consensus 84 v~~~Pt~~i~~--g-~~--------~~~G~~----~~~~l~~fv~~~l~~~~~~~~l~~-------~-------~~~~~~ 134 (243)
T 2hls_A 84 VERVPTVAFLG--G-EV--------RWTGIP----AGEEIRALVEVIMRLSEDESGLED-------A-------TKEALK 134 (243)
T ss_dssp CCSSSEEEETT--T-TE--------EEESCC----CTTHHHHHHHHHHHHHTTCCCCCH-------H-------HHHHHH
T ss_pred CCcCCEEEEEC--C-ce--------eEcCCC----cHHHHHHHHHHHHhccCCCCCCCH-------H-------HHHHHH
Confidence 99999999983 3 11 111211 234455544432211100 00000 0 000123
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhc-CCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
++.++++++.||++||++|+.+.|.|++++..++.+ ..++.+..|+++..+ ++++.
T Consensus 135 ~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~-----------------------~~~~~ 191 (243)
T 2hls_A 135 SLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENP-----------------------DIADK 191 (243)
T ss_dssp HCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCH-----------------------HHHHH
T ss_pred HcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCH-----------------------HHHHH
Confidence 456889999999999999999999999999998521 125888888877654 47889
Q ss_pred cCCCCccEEEEECCCCcEEEc
Q 008336 433 FKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~~ 453 (569)
|+|+++||+++ +|++++.
T Consensus 192 ~~V~~vPt~~i---~G~~~~~ 209 (243)
T 2hls_A 192 YGVMSVPSIAI---NGYLVFV 209 (243)
T ss_dssp TTCCSSSEEEE---TTEEEEE
T ss_pred cCCeeeCeEEE---CCEEEEe
Confidence 99999999988 7887644
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.7e-19 Score=161.25 Aligned_cols=116 Identities=14% Similarity=0.200 Sum_probs=95.9
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSF 407 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~ 407 (569)
...|+|.+ +.+|+++++++++||++||+||++||++|++++|.|++++++++++ ++.|++|++|. +.+.+
T Consensus 27 ~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~v~vv~vs~d~~~~~e~~~~~~~ 104 (181)
T 2p31_A 27 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPH--HFNVLAFPCNQFGQQEPDSNKEI 104 (181)
T ss_dssp CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCHHHH
T ss_pred CccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC--CEEEEEEECcCCCCCCCCCHHHH
Confidence 34589988 9999999999999999999999999999999999999999999876 69999999984 67788
Q ss_pred HHHHhc-CCCcccccCc--hhhHHHH---HhcCCCCcc-------EEEEECCCCcEEEcc
Q 008336 408 DEFFKG-MPWLALPFGD--ARKASLS---RKFKVSGIP-------MLVAIGPSGRTITKE 454 (569)
Q Consensus 408 ~~~~~~-~~~~~~~~~~--d~~~~l~---~~~~v~~~P-------t~~lid~~G~i~~~~ 454 (569)
++|+++ ++ +.+|+.. |.++... -.|.+.++| ++||||++|+|+.+.
T Consensus 105 ~~~~~~~~~-~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~ 163 (181)
T 2p31_A 105 ESFARRTYS-VSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAW 163 (181)
T ss_dssp HHHHHHHHC-CCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEE
T ss_pred HHHHHhhcC-CCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEe
Confidence 899887 65 5677663 2222111 135577888 999999999999984
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=160.98 Aligned_cols=117 Identities=16% Similarity=0.227 Sum_probs=102.7
Q ss_pred cCCcccee-cC-CC--CceecccCCCCEEEEEEec-CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHH
Q 008336 336 SGDLDFVV-GK-NG--GKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 410 (569)
Q Consensus 336 ~~~~~f~~-~~-~g--~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~ 410 (569)
...|+|.+ +. +| +.+++++++||++||+||+ +||++|+.++|.|++++++++++ +++||+|++|. .+..++|
T Consensus 5 ~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~--~v~vv~Is~d~-~~~~~~~ 81 (186)
T 1n8j_A 5 TKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL--GVDVYSVSTDT-HFTHKAW 81 (186)
T ss_dssp CBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT--TEEEEEEESSC-HHHHHHH
T ss_pred CcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHC--CCEEEEEECCC-HHHHHHH
Confidence 34689988 77 58 8999999999999999995 99999999999999999999875 69999999984 5678889
Q ss_pred HhcCC---CcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccc
Q 008336 411 FKGMP---WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 411 ~~~~~---~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~ 455 (569)
+++++ .+.||++.|....+++.|++. .+|++||||++|+|+++..
T Consensus 82 ~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~ 135 (186)
T 1n8j_A 82 HSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEV 135 (186)
T ss_dssp HHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHcCcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEe
Confidence 98872 367888888888999999997 3799999999999999854
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.7e-18 Score=149.69 Aligned_cols=115 Identities=25% Similarity=0.436 Sum_probs=102.3
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeC--CCCHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG--DEDDEAFKGY 89 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~--d~~~~~~~~~ 89 (569)
.+|.++|+| +.+.+|+.+++++++ | +||+||++||++|+.++|.|.++++++ ++.+++|++ +++.+.+++|
T Consensus 6 ~~g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~----~v~~v~v~~d~~~~~~~~~~~ 80 (154)
T 3ia1_A 6 KPGEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET----GVPFYVISREPRDTREVVLEY 80 (154)
T ss_dssp CSBEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH----CCCEEEEECCTTCCHHHHHHH
T ss_pred CCCCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc----CCeEEEEeCCCcccHHHHHHH
Confidence 479999999 667899999999999 9 999999999999999999999999999 388999999 5789999999
Q ss_pred HHhCCCcccccCCc-hhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDS-ETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~-~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
++++++.+..+.+. +....+.+.|++.++|+++|+|++|+++..
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 125 (154)
T 3ia1_A 81 MKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVAL 125 (154)
T ss_dssp HTTCTTEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEE
T ss_pred HHHcCCCcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEE
Confidence 99999877666652 234579999999999999999999999874
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=163.43 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=114.3
Q ss_pred cCCcccee-cC--CC--CceecccC-CCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHH
Q 008336 336 SGDLDFVV-GK--NG--GKVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 408 (569)
Q Consensus 336 ~~~~~f~~-~~--~g--~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~ 408 (569)
...|+|.+ +. +| +.++++++ +||++||+|| ++||++|+.++|.|.+++++|+++ +++||+|++| +.+..+
T Consensus 25 ~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~D-~~~~~~ 101 (213)
T 2i81_A 25 KEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHER--NVELLGCSVD-SKYTHL 101 (213)
T ss_dssp SBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHT--TEEEEEEESS-CHHHHH
T ss_pred CcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHHHH
Confidence 34689988 77 89 89999999 9999999999 999999999999999999999865 6999999998 557788
Q ss_pred HHHhcCC------CcccccCchhhHHHHHhcCCC-----CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHH
Q 008336 409 EFFKGMP------WLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 477 (569)
Q Consensus 409 ~~~~~~~------~~~~~~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 477 (569)
+|++.+. .+.+|++.|....+++.|++. .+|++||||++|+|+++..+.. ......++|
T Consensus 102 ~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~----------~~~~~~~el 171 (213)
T 2i81_A 102 AWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNL----------AIGRSVDEI 171 (213)
T ss_dssp HHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECT----------TCCCCHHHH
T ss_pred HHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCCCEEEEEEecCC----------CCCCCHHHH
Confidence 8988772 478899989889999999999 8999999999999999853221 112345666
Q ss_pred HHHhhhhh
Q 008336 478 DGQYNEMA 485 (569)
Q Consensus 478 ~~~l~~l~ 485 (569)
.+.|+.+.
T Consensus 172 l~~l~~l~ 179 (213)
T 2i81_A 172 LRIIDAIQ 179 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67776654
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=157.53 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=101.5
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
..+|.++|+| +.+.+|+.+++++++|| ++|+|| ++||++|+.++|.|++++++|++.+ +.|++|+.| +.+..++|
T Consensus 25 d~ig~~aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~-~~vv~Vs~D-~~~~~~~~ 102 (179)
T 3ixr_A 25 DTLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQIN-ATVLGVSRD-SVKSHDSF 102 (179)
T ss_dssp CBCCHHHHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTT-EEEEEEESC-CHHHHHHH
T ss_pred cccCCcCCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEcCC-CHHHHHHH
Confidence 3455669999 66789999999999999 999998 9999999999999999999999875 999999998 57788999
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCCCC------------ccEEEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKVMG------------IPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~------------~P~~~lid~~G~i~~~ 133 (569)
+++++..+..+.|.. ..+.+.|++.. .|++||||++|+|+..
T Consensus 103 ~~~~~~~f~~l~D~~--~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~ 156 (179)
T 3ixr_A 103 CAKQGFTFPLVSDSD--AILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEA 156 (179)
T ss_dssp HHHHTCCSCEEECTT--CHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEE
T ss_pred HHHcCCceEEEECCc--hHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEE
Confidence 999887776666644 36889999853 6999999999999874
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=155.57 Aligned_cols=109 Identities=20% Similarity=0.357 Sum_probs=98.4
Q ss_pred cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-----CChhHHHHHHhcCCCcc
Q 008336 344 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-----RDQTSFDEFFKGMPWLA 418 (569)
Q Consensus 344 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-----~~~~~~~~~~~~~~~~~ 418 (569)
+.+|+.+++++++||++||+||++||++|+.++|.|++++++++.+ ++.||+|++| .+.+.+.+|++.+++..
T Consensus 25 ~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (164)
T 2h30_A 25 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS--SANLITVASPGFLHEKKDGEFQKWYAGLNYPK 102 (164)
T ss_dssp ETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGT--TSEEEEEECTTSTTCCCTTHHHHHHTTSCCTT
T ss_pred CCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CcEEEEEEcCCCccccCHHHHHHHHHhCCCCc
Confidence 7899999999999999999999999999999999999999998765 6999999985 34578889998887666
Q ss_pred cccCchhhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 419 LPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 419 ~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+++..+....+++.|+|.++|+++|||++|+++.+.
T Consensus 103 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 138 (164)
T 2h30_A 103 LPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIV 138 (164)
T ss_dssp SCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEE
T ss_pred ceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEE
Confidence 888888888999999999999999999999999874
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.3e-19 Score=159.49 Aligned_cols=135 Identities=14% Similarity=0.126 Sum_probs=111.8
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCC-ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
..|+|.+ +.+|+++++++++||+++|+||++| |++|+.++|.|+++++++ . ++.|++|++| +.+.+++|++++
T Consensus 23 ~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~---~~~vv~is~d-~~~~~~~~~~~~ 97 (167)
T 2jsy_A 23 QAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-G---DVNVYTISAD-LPFAQARWCGAN 97 (167)
T ss_dssp CCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-S---SCEEEEEECS-SGGGTSCCGGGS
T ss_pred cCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-C---CCEEEEEECC-CHHHHHHHHHhc
Confidence 4589988 9999999999999999999999999 999999999999999999 3 5999999998 456778888888
Q ss_pred CCcccccCch-hhHHHHHhcCCCC------ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhh
Q 008336 415 PWLALPFGDA-RKASLSRKFKVSG------IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 485 (569)
Q Consensus 415 ~~~~~~~~~d-~~~~l~~~~~v~~------~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~ 485 (569)
++..+|++.| ....+++.|++.. +|+++|||++|+|+++..+.. +....+.+++.+.|++++
T Consensus 98 ~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~---------~~~~~~~~~l~~~l~~ll 166 (167)
T 2jsy_A 98 GIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSE---------ATNHPNYEKPIEAAKALV 166 (167)
T ss_dssp SCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSB---------TTSCCCSHHHHHHHHHHH
T ss_pred CCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCC---------cCCCCCHHHHHHHHHHhh
Confidence 7548888888 7888999999987 499999999999999854321 112223466677777665
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.1e-17 Score=164.99 Aligned_cols=279 Identities=13% Similarity=0.141 Sum_probs=171.9
Q ss_pred CCc-EEEEEecCCCHhhHhhH------HHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHH
Q 008336 37 KGK-IGLYFSASWCGPCQRFT------PILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 109 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~------p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (569)
.++ +||+||||||+||+... |.+.++++.++.. ++.++.|+++..+ .+
T Consensus 29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~-~v~~~~Vd~~~~~------------------------~l 83 (367)
T 3us3_A 29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK-GVGFGLVDSEKDA------------------------AV 83 (367)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTTH------------------------HH
T ss_pred hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcC-CceEEEEeCcccH------------------------HH
Confidence 357 99999999999974332 6889999998755 4999999999764 49
Q ss_pred HHhcCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCce
Q 008336 110 DELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRK 189 (569)
Q Consensus 110 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~ 189 (569)
++.|+|+++||++++ ++|+.+.+.| +++.+.|.+++.+.. ...+.. ++ +.+.
T Consensus 84 ~~~~~V~~~PTl~~f-~~G~~~~y~G------------~~~~~~i~~~i~~~~----~~~v~~----------i~-~~~~ 135 (367)
T 3us3_A 84 AKKLGLTEEDSIYVF-KEDEVIEYDG------------EFSADTLVEFLLDVL----EDPVEL----------IE-GERE 135 (367)
T ss_dssp HHHHTCCSTTEEEEE-ETTEEEECCS------------CCSHHHHHHHHHHHH----SCSEEE----------CC-SHHH
T ss_pred HHHcCCCcCceEEEE-ECCcEEEeCC------------CCCHHHHHHHHHHhc----CCCcEE----------cC-CHHH
Confidence 999999999999999 5787654322 345666666654321 111110 00 0011
Q ss_pred eeeccc-cCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHH
Q 008336 190 ISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 268 (569)
Q Consensus 190 ~~~~~~-~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~ 268 (569)
+..... +.+.+++.|+.++| ....+.+.+++..++.. +.|+... ...
T Consensus 136 ~~~~~~~~~~~~vv~ff~~~~---~~~~~~f~~~A~~~~~~-----~~F~~~~------------------------~~~ 183 (367)
T 3us3_A 136 LQAFENIEDEIKLIGYFKNKD---SEHYKAFKEAAEEFHPY-----IPFFATF------------------------DSK 183 (367)
T ss_dssp HHHHHHCCSSCEEEEECSCTT---CHHHHHHHHHHHHHTTT-----SCEEEEC------------------------CHH
T ss_pred HHHHhccCCCcEEEEEECCCC---chHHHHHHHHHHhhcCC-----cEEEEEC------------------------CHH
Confidence 111001 23556666666654 46677888888888654 3333322 235
Q ss_pred HHhhcccCCCceEEEECCCC-C-chhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCccceecCC
Q 008336 269 LARYFELSTLPTLVIIGPDG-K-TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKN 346 (569)
Q Consensus 269 l~~~f~v~~~Ptlvi~~~~g-~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~~~ 346 (569)
+++.|+++. |+++++.+.. . ..+. | -+++.+.+..++..... |- +...+
T Consensus 184 ~~~~~~v~~-p~i~lf~~~~~~~~~y~---------g---~~~~~~~l~~fi~~~~~---------------p~-v~elt 234 (367)
T 3us3_A 184 VAKKLTLKL-NEIDFYEAFMEEPVTIP---------D---KPNSEEEIVNFVEEHRR---------------ST-LRKLK 234 (367)
T ss_dssp HHHHHTCCT-TCEEEECTTCSSCEECS---------S---SSCCHHHHHHHHHHTCS---------------CS-EEECC
T ss_pred HHHHcCCCC-CeEEEEcCCCCCCeecC---------C---CCCCHHHHHHHHHHcCc---------------cc-eeecC
Confidence 678899885 9999997632 1 1111 1 13567777777653211 11 11111
Q ss_pred CCce-e-cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCch
Q 008336 347 GGKV-P-VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDA 424 (569)
Q Consensus 347 g~~v-~-l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d 424 (569)
.... . +.+-..++.+|.|+..+|+.+....+.|.+++++++++ ..+.++.|+.+.....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~-~ki~F~~id~~~~~~~------------------ 295 (367)
T 3us3_A 235 PESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDN-PDLSIIWIDPDDFPLL------------------ 295 (367)
T ss_dssp GGGHHHHHHSCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHTTTC-TTCCEEEECGGGCTTT------------------
T ss_pred hhhHHHHHhhccCCcEEEEEEcCCChhHHHHHHHHHHHHHHcCCC-CceEEEEECCccchhH------------------
Confidence 1111 1 11101345667799999999999999999999999863 1377788776543210
Q ss_pred hhHHHHHhcCCC-CccEEEEECCCCc
Q 008336 425 RKASLSRKFKVS-GIPMLVAIGPSGR 449 (569)
Q Consensus 425 ~~~~l~~~~~v~-~~Pt~~lid~~G~ 449 (569)
...+.+.||+. .+|++++++....
T Consensus 296 -l~~~~~~fgl~~~~P~~~i~~~~~~ 320 (367)
T 3us3_A 296 -VPYWEKTFDIDLSAPQIGVVNVTDA 320 (367)
T ss_dssp -HHHHHHHHTCCTTSCEEEEEETTTC
T ss_pred -HHHHHHhcCCCCCCCeEEEEecccc
Confidence 01124567887 8999999986543
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=160.86 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=104.3
Q ss_pred CCcccee-cCCCC----ceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHH
Q 008336 337 GDLDFVV-GKNGG----KVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 410 (569)
Q Consensus 337 ~~~~f~~-~~~g~----~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~ 410 (569)
..|+|.+ +.+|+ .+++++++||++||+|| ++||++|+.++|.|.+++++++++ ++.|++|++|. .+..++|
T Consensus 6 ~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~vs~d~-~~~~~~~ 82 (187)
T 1we0_A 6 EVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL--GVEVYSVSTDT-HFVHKAW 82 (187)
T ss_dssp BCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT--TEEEEEEESSC-HHHHHHH
T ss_pred cCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc--CCEEEEEECCC-HHHHHHH
Confidence 4589988 88898 99999999999999999 999999999999999999999875 69999999986 5778889
Q ss_pred HhcCC---CcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccc
Q 008336 411 FKGMP---WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 411 ~~~~~---~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~ 455 (569)
.+.+. .+.+|++.|....+++.|++. ++|+++|||++|+|+.+..
T Consensus 83 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~ 136 (187)
T 1we0_A 83 HENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEI 136 (187)
T ss_dssp HHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHhccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEe
Confidence 88873 367888888888999999999 9999999999999999854
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=7.5e-18 Score=155.64 Aligned_cols=117 Identities=26% Similarity=0.491 Sum_probs=100.4
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC-HHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED-DEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~-~~~~~~~~ 90 (569)
.+|.++|+| +.+.+|+.+++++++|| +||+||++||++|+.++|.|.+++++++.. ++.|++|++|.+ .+.+++|+
T Consensus 35 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~d~~~~~~~~~~~ 113 (186)
T 1jfu_A 35 SAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP-NFEVVAINIDTRDPEKPKTFL 113 (186)
T ss_dssp CSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT-TEEEEEEECCCSCTTHHHHHH
T ss_pred cCCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccC-CcEEEEEECCCCCHHHHHHHH
Confidence 569999999 56789999999999999 999999999999999999999999999866 499999999964 57789999
Q ss_pred HhCCCcccc-cCCchhHHHHHHhcCCC----CccEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVP-FSDSETRDKLDELFKVM----GIPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~-~~~~~~~~~l~~~~~v~----~~P~~~lid~~G~i~~~ 133 (569)
++++....+ +.+.. ..+.+.|++. ++|+++|||++|+|+..
T Consensus 114 ~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~ 159 (186)
T 1jfu_A 114 KEANLTRLGYFNDQK--AKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 159 (186)
T ss_dssp HHTTCCTTCCEECTT--CHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred HHcCCCCCceEECCc--chHHHHhccccccCCCCEEEEECCCCCEEEE
Confidence 999874333 34433 4678888885 89999999999999874
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=161.00 Aligned_cols=119 Identities=21% Similarity=0.175 Sum_probs=93.1
Q ss_pred cccCccCCc-eecCC-CceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCH
Q 008336 14 LLSSSARDF-LIRSN-GDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDD 83 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~-g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~ 83 (569)
-.+.++|+| +.+.+ |+.+++++++|| +||+|||+|||+|+.++|.|++++++|++++ ++|++|++| ++.
T Consensus 21 ~~~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g-~~vv~v~~d~~~~~e~d~~ 99 (208)
T 2f8a_A 21 QSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG-LVVLGFPCNQFGHQENAKN 99 (208)
T ss_dssp -CCCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECCCSTTTTCSCH
T ss_pred hhcCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCC-eEEEEEECCcccccCCCCH
Confidence 347889999 55688 999999999999 9999999999999999999999999999875 999999987 246
Q ss_pred HHHHHHHH------hCCCcccccCCch----hH----HHHHHhc-------------------------CCCCccEEEEE
Q 008336 84 EAFKGYFS------KMPWLAVPFSDSE----TR----DKLDELF-------------------------KVMGIPHLVIL 124 (569)
Q Consensus 84 ~~~~~~~~------~~~~~~~~~~~~~----~~----~~l~~~~-------------------------~v~~~P~~~li 124 (569)
+.+++|++ +++..+..+.+.+ .. ..+...+ ++.+.|+++||
T Consensus 100 ~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflI 179 (208)
T 2f8a_A 100 EEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLV 179 (208)
T ss_dssp HHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEE
T ss_pred HHHHHHHHhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEE
Confidence 78899997 6666554442211 00 1111112 36677999999
Q ss_pred CCCCcEEEc
Q 008336 125 DENGKVLSD 133 (569)
Q Consensus 125 d~~G~i~~~ 133 (569)
|++|+|+.+
T Consensus 180 D~~G~i~~~ 188 (208)
T 2f8a_A 180 GPDGVPLRR 188 (208)
T ss_dssp CTTSCEEEE
T ss_pred cCCCcEEEE
Confidence 999999875
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-18 Score=156.19 Aligned_cols=117 Identities=17% Similarity=0.261 Sum_probs=95.8
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSF 407 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~~ 407 (569)
...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ ++.|++|++| .+.+.+
T Consensus 10 ~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~ 87 (170)
T 2p5q_A 10 ESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ--GLEILAFPCNQFGEEEPGTNDQI 87 (170)
T ss_dssp CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCTTTTCCCSCHHHH
T ss_pred ccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC--CEEEEEEECCCCCCCCCCCHHHH
Confidence 34589988 9999999999999999999999999999999999999999999876 6999999997 367788
Q ss_pred HHHHh-cCCCcccccC--chhhHHH----H-----HhcCC--CCcc---EEEEECCCCcEEEccc
Q 008336 408 DEFFK-GMPWLALPFG--DARKASL----S-----RKFKV--SGIP---MLVAIGPSGRTITKEA 455 (569)
Q Consensus 408 ~~~~~-~~~~~~~~~~--~d~~~~l----~-----~~~~v--~~~P---t~~lid~~G~i~~~~~ 455 (569)
++|++ +++ +.+|+. .|..... . +.+++ .++| +++|||++|+|+.+..
T Consensus 88 ~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~ 151 (170)
T 2p5q_A 88 TDFVCTRFK-SEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYY 151 (170)
T ss_dssp HHHHHHHTC-CCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEEC
T ss_pred HHHHHHhcC-CCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeC
Confidence 89988 555 456665 2333222 1 12466 7888 9999999999999853
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=157.10 Aligned_cols=116 Identities=12% Similarity=0.189 Sum_probs=93.2
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFD 408 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~~ 408 (569)
..|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ ++.|++|++|. +.+.++
T Consensus 10 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~~~~~~~~~~~ 87 (169)
T 2v1m_A 10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGK--GLRILAFPCNQFGGQEPWAEAEIK 87 (169)
T ss_dssp SGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCHHHHH
T ss_pred ccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcC--CeEEEEEECCccCCCCCCCHHHHH
Confidence 4589988 9999999999999999999999999999999999999999999876 69999999973 457788
Q ss_pred HH-HhcCCCcccccCc--hhhHHHH----H-----hcC-----CCCccEEEEECCCCcEEEccc
Q 008336 409 EF-FKGMPWLALPFGD--ARKASLS----R-----KFK-----VSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 409 ~~-~~~~~~~~~~~~~--d~~~~l~----~-----~~~-----v~~~Pt~~lid~~G~i~~~~~ 455 (569)
+| .++++ +.+|+.. |..+... + .++ ++.+|+++|||++|+|+.+..
T Consensus 88 ~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~ 150 (169)
T 2v1m_A 88 KFVTEKYG-VQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYS 150 (169)
T ss_dssp HHHHHHHC-CCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEEC
T ss_pred HHHHHhcC-CCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcC
Confidence 88 47665 4566553 3222211 1 125 556799999999999999853
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-18 Score=161.04 Aligned_cols=116 Identities=20% Similarity=0.219 Sum_probs=99.5
Q ss_pred cccCccCCc-eecC--CC--ceeecCCC-CCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHH
Q 008336 14 LLSSSARDF-LIRS--NG--DQVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85 (569)
Q Consensus 14 ~~g~~~pdf-~~~~--~g--~~v~l~~~-~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~ 85 (569)
.+|.++|+| +.+. +| +.++++++ +|| +||+|| ++||++|+.++|.|++++++|++++ ++|++|++| +.+.
T Consensus 26 ~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~-v~vv~Is~D-~~~~ 103 (221)
T 2c0d_A 26 LVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKN-VELLGISVD-SVYS 103 (221)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTT-EEEEEEESS-CHHH
T ss_pred CCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEeCC-CHHH
Confidence 579999999 5566 89 99999999 999 999999 9999999999999999999998775 999999997 5677
Q ss_pred HHHHHHhC-------CCcccccCCchhHHHHHHhcCC-----CCccEEEEECCCCcEEEc
Q 008336 86 FKGYFSKM-------PWLAVPFSDSETRDKLDELFKV-----MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~G~i~~~ 133 (569)
.++|+++. ++.+..+.|.. ..+.+.|++ ..+|+++|||++|+|+..
T Consensus 104 ~~~~~~~~~~~~g~~~~~fp~l~D~~--~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~ 161 (221)
T 2c0d_A 104 HLAWKNMPIEKGGIGNVEFTLVSDIN--KDISKNYNVLYDNSFALRGLFIIDKNGCVRHQ 161 (221)
T ss_dssp HHHHHHSCGGGTCCCSCSSEEEECTT--SHHHHHTTCEETTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHhhhhcCccCCceEEEECCc--hHHHHHcCCcccCCCccceEEEECCCCeEEEE
Confidence 88899887 44444445533 478899999 479999999999999975
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=160.00 Aligned_cols=134 Identities=15% Similarity=0.219 Sum_probs=105.7
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFD 408 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~~ 408 (569)
..|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ ++.||+|++|. +.+.++
T Consensus 27 ~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~ 104 (190)
T 2vup_A 27 SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ--GFTVLAFPCNQFGGQEPGNEEEIK 104 (190)
T ss_dssp SGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TCEEEEEECCCSTTCCCSCHHHHH
T ss_pred cccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC--CeEEEEEEcCccCCCCCCCHHHHH
Confidence 3589988 9999999999999999999999999999999999999999999876 69999999984 677888
Q ss_pred HHH-hcCCCcccccCc--hhhHHH----H-----HhcCCCCcc------EEEEECCCCcEEEccchhhHhhcCCCCCCCC
Q 008336 409 EFF-KGMPWLALPFGD--ARKASL----S-----RKFKVSGIP------MLVAIGPSGRTITKEARDMIAVHGAEAYPFT 470 (569)
Q Consensus 409 ~~~-~~~~~~~~~~~~--d~~~~l----~-----~~~~v~~~P------t~~lid~~G~i~~~~~~~~~~~~g~~~~p~~ 470 (569)
+|+ ++++ +.+|++. |....+ . +.|++.++| ++||||++|+|+.+..+. ..
T Consensus 105 ~~~~~~~~-~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~-----------~~ 172 (190)
T 2vup_A 105 EFVCTKFK-AEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPG-----------AS 172 (190)
T ss_dssp HHHHHHHC-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTT-----------CC
T ss_pred HHHHHhcC-CCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCC-----------CC
Confidence 998 6665 4566653 322221 1 346899999 999999999999984321 12
Q ss_pred HHHHHHHHHHhhhhhcC
Q 008336 471 EERMKEIDGQYNEMAKG 487 (569)
Q Consensus 471 ~~~~~~l~~~l~~l~~~ 487 (569)
.++|.+.|+++++.
T Consensus 173 ---~~~l~~~i~~ll~~ 186 (190)
T 2vup_A 173 ---VKDIEKKLIPLLES 186 (190)
T ss_dssp ---HHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHhh
Confidence 24566777777653
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-18 Score=156.75 Aligned_cols=116 Identities=22% Similarity=0.289 Sum_probs=101.1
Q ss_pred cccCccCCc-eecCCCc----eeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 14 LLSSSARDF-LIRSNGD----QVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~----~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
.+|.++|+| +.+.+|+ .+++++++|| +||+|| ++||++|+.++|.|.+++++|++++ +.|++|++|. .+..
T Consensus 2 ~~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~-v~vv~vs~d~-~~~~ 79 (187)
T 1we0_A 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG-VEVYSVSTDT-HFVH 79 (187)
T ss_dssp CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT-EEEEEEESSC-HHHH
T ss_pred CCCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcC-CEEEEEECCC-HHHH
Confidence 369999999 5567888 9999999999 999999 9999999999999999999998774 9999999985 6778
Q ss_pred HHHHHhC----CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 87 KGYFSKM----PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~----~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
++|++++ ++.+..+.+.. ..+.+.|++. ++|+++|||++|+|+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~ 134 (187)
T 1we0_A 80 KAWHENSPAVGSIEYIMIGDPS--QTISRQFDVLNEETGLADRGTFIIDPDGVIQAI 134 (187)
T ss_dssp HHHHHSCHHHHTCCSEEEECTT--CHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHHhccccCCCceEEECCc--hHHHHHhCCCcCCCCceeeEEEEECCCCeEEEE
Confidence 8999887 56555555543 4788999998 99999999999999875
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-18 Score=158.32 Aligned_cols=116 Identities=21% Similarity=0.296 Sum_probs=85.5
Q ss_pred cCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHH
Q 008336 16 SSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAF 86 (569)
Q Consensus 16 g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~~~ 86 (569)
++.+|+| +.+.+|+.+++++++|| +||+|||+||++|+ ++|.|.++++++++++ +.|++|++| ++.+.+
T Consensus 9 ~~~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~-v~vv~vs~d~~~~~~~d~~~~~ 86 (171)
T 3cmi_A 9 MSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEG-FTIIGFPCNQFGHQEPGSDEEI 86 (171)
T ss_dssp -CGGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGT-EEEEEEEECSCC----------
T ss_pred hhheeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCC-eEEEEEECcccCCCCCCCHHHH
Confidence 6788999 56789999999999999 99999999999999 9999999999998875 999999986 456788
Q ss_pred HHHH-HhCCCcccccCCchhH----HH-----HHHhcCCCCcc------EEEEECCCCcEEEc
Q 008336 87 KGYF-SKMPWLAVPFSDSETR----DK-----LDELFKVMGIP------HLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~~~~----~~-----l~~~~~v~~~P------~~~lid~~G~i~~~ 133 (569)
++|+ ++++..+..+.+.+.. .. ..+.|++.++| +++|||++|+|+..
T Consensus 87 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~ 149 (171)
T 3cmi_A 87 AQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYER 149 (171)
T ss_dssp --------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEE
T ss_pred HHHHHhccCCCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEE
Confidence 8999 8877666555432211 01 12468999999 99999999999875
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=160.10 Aligned_cols=174 Identities=17% Similarity=0.150 Sum_probs=112.6
Q ss_pred CcEEEEEE----ecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhh
Q 008336 197 GKTIGLYF----SMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (569)
Q Consensus 197 gk~v~l~f----~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~ 272 (569)
+..++++| ..+||++|+.+.|.+.+++..+... ..+ .++.+|.++ .+.+++.
T Consensus 21 ~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~-~~v--~~~~vd~~~---------------------~~~l~~~ 76 (229)
T 2ywm_A 21 EPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQ-DKI--KLDIYSPFT---------------------HKEETEK 76 (229)
T ss_dssp SCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCT-TTE--EEEEECTTT---------------------CHHHHHH
T ss_pred CCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCC-Cce--EEEEecCcc---------------------cHHHHHH
Confidence 34455555 2688999999999999998888542 234 444444443 5689999
Q ss_pred cccCCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCccceecCCCCce-e
Q 008336 273 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV-P 351 (569)
Q Consensus 273 f~v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~~~g~~v-~ 351 (569)
|+|+++||+++++ +|+... ...| ..+...+..+........ + +...+ +...+ .
T Consensus 77 ~~v~~~Ptl~~~~-~~~~~~-------~~~G----~~~~~~l~~~~~~~~~~~-----------~-~~~~l--~~~~~~~ 130 (229)
T 2ywm_A 77 YGVDRVPTIVIEG-DKDYGI-------RYIG----LPAGLEFTTLINGIFHVS-----------Q-RKPQL--SEKTLEL 130 (229)
T ss_dssp TTCCBSSEEEEES-SSCCCE-------EEES----CCCTTHHHHHHHHHHHHH-----------T-TCCSC--CHHHHHH
T ss_pred cCCCcCcEEEEEC-CCcccc-------eecC----CccHHHHHHHHHHHHhcc-----------C-CccCC--CHHHHHH
Confidence 9999999999996 333211 1112 123344444443222100 0 00000 00000 0
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 352 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 352 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
+....++.++|+||++||++|+.+.|.++++++++. ++.++.|+++..+ ++++
T Consensus 131 ~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~----~v~~~~vd~~~~~-----------------------~l~~ 183 (229)
T 2ywm_A 131 LQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND----YITSKVIDASENQ-----------------------DLAE 183 (229)
T ss_dssp HTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT----TEEEEEEEGGGCH-----------------------HHHH
T ss_pred HHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC----CeEEEEEECCCCH-----------------------HHHH
Confidence 112235566899999999999999999999988872 4888888887654 4899
Q ss_pred hcCCCCccEEEEECCCCcE
Q 008336 432 KFKVSGIPMLVAIGPSGRT 450 (569)
Q Consensus 432 ~~~v~~~Pt~~lid~~G~i 450 (569)
.|+|+++||+++ +|++
T Consensus 184 ~~~v~~~Pt~~~---~G~~ 199 (229)
T 2ywm_A 184 QFQVVGVPKIVI---NKGV 199 (229)
T ss_dssp HTTCCSSSEEEE---GGGT
T ss_pred HcCCcccCEEEE---CCEE
Confidence 999999999998 6773
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=160.13 Aligned_cols=137 Identities=12% Similarity=0.124 Sum_probs=113.4
Q ss_pred CCcccee-cCC-------------C--CceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEe
Q 008336 337 GDLDFVV-GKN-------------G--GKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 399 (569)
Q Consensus 337 ~~~~f~~-~~~-------------g--~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is 399 (569)
..|+|.+ +.+ | +.+++++++||++||+|| ++||++|+.++|.|.+++++++++ ++.|++|+
T Consensus 9 ~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Vs 86 (195)
T 2bmx_A 9 QFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR--DAQILGVS 86 (195)
T ss_dssp BCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT--TEEEEEEE
T ss_pred cCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC--CCEEEEEE
Confidence 3588877 666 7 899999999999999999 999999999999999999999865 69999999
Q ss_pred CCCChhHHHHHHhcCC---CcccccCchhhHHHHHhcCCC-----CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCH
Q 008336 400 SDRDQTSFDEFFKGMP---WLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTE 471 (569)
Q Consensus 400 ~d~~~~~~~~~~~~~~---~~~~~~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~ 471 (569)
+|. .+..++|++.+. .+.+|++.|....+++.|++. ++|+++|||++|+|+++..+.. ...
T Consensus 87 ~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~----------~~~ 155 (195)
T 2bmx_A 87 IDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAG----------SVG 155 (195)
T ss_dssp SSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEECT----------TCC
T ss_pred CCC-HHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCcccCCCccceEEEEcCCCeEEEEEecCC----------CCC
Confidence 985 578888988772 367888888888999999999 9999999999999999854321 011
Q ss_pred HHHHHHHHHhhhhhc
Q 008336 472 ERMKEIDGQYNEMAK 486 (569)
Q Consensus 472 ~~~~~l~~~l~~l~~ 486 (569)
...++|.+.|+++..
T Consensus 156 ~~~~~l~~~l~~l~~ 170 (195)
T 2bmx_A 156 RNVDEVLRVLDALQS 170 (195)
T ss_dssp CCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhh
Confidence 245667777777764
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-18 Score=154.82 Aligned_cols=119 Identities=18% Similarity=0.321 Sum_probs=94.5
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDE 84 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~ 84 (569)
.+|.++|+| +.+.+|+.+++++++|| +||+||++||++|+.++|.|.++++++++++ +.|++|++| ++.+
T Consensus 7 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~-~~vv~vs~d~~~~~~~~~~~ 85 (170)
T 2p5q_A 7 KNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQG-LEILAFPCNQFGEEEPGTND 85 (170)
T ss_dssp ---CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECCTTTTCCCSCHH
T ss_pred CCCccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCC-EEEEEEECCCCCCCCCCCHH
Confidence 479999999 56789999999999999 9999999999999999999999999998774 999999997 4688
Q ss_pred HHHHHHH-hCCCcccccC--CchhH--HHHH-----HhcCC--CCcc---EEEEECCCCcEEEc
Q 008336 85 AFKGYFS-KMPWLAVPFS--DSETR--DKLD-----ELFKV--MGIP---HLVILDENGKVLSD 133 (569)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~--~~~~~--~~l~-----~~~~v--~~~P---~~~lid~~G~i~~~ 133 (569)
.+++|++ +++..+..+. +.... ..+. ..+++ .++| +++|||++|+|+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~ 149 (170)
T 2p5q_A 86 QITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDR 149 (170)
T ss_dssp HHHHHHHHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEe
Confidence 8999999 6666554442 22211 1122 12466 7788 99999999999875
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.4e-18 Score=158.17 Aligned_cols=134 Identities=17% Similarity=0.209 Sum_probs=101.2
Q ss_pred cCCcccee-cCC-CCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhH
Q 008336 336 SGDLDFVV-GKN-GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTS 406 (569)
Q Consensus 336 ~~~~~f~~-~~~-g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~ 406 (569)
...|+|.+ +.+ |+.++|++++||+|||+|||+||++|+ ++|.|++++++|+++ +++||+|++|. +.+.
T Consensus 33 ~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~--g~~Vlgvs~d~f~~~e~~~~~~ 109 (215)
T 2i3y_A 33 GTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPY--GLVVLGFPCNQFGKQEPGDNKE 109 (215)
T ss_dssp CCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCHHH
T ss_pred CCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccC--CeEEEEEEccccCcCCCCCHHH
Confidence 34689988 999 999999999999999999999999999 999999999999876 79999999762 4567
Q ss_pred HHHHHh------cCCCcccccCchh--hH----H----HHHh-------c--------------CCCCccEEEEECCCCc
Q 008336 407 FDEFFK------GMPWLALPFGDAR--KA----S----LSRK-------F--------------KVSGIPMLVAIGPSGR 449 (569)
Q Consensus 407 ~~~~~~------~~~~~~~~~~~d~--~~----~----l~~~-------~--------------~v~~~Pt~~lid~~G~ 449 (569)
+++|++ +++ +.||++.+. ++ . +... + .|...|++||||++|+
T Consensus 110 i~~f~~~~~~~~~~~-~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~ 188 (215)
T 2i3y_A 110 ILPGLKYVRPGGGFV-PSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGI 188 (215)
T ss_dssp HHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSC
T ss_pred HHHHHHhccchhccC-ccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCe
Confidence 888988 666 677776431 11 1 1111 1 1233489999999999
Q ss_pred EEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcC
Q 008336 450 TITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 487 (569)
Q Consensus 450 i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~ 487 (569)
|+.+..+. .. .++|.+.|+++++.
T Consensus 189 vv~~~~g~-----------~~---~~~l~~~I~~ll~~ 212 (215)
T 2i3y_A 189 PVMRWSHR-----------AT---VSSVKTDILAYLKQ 212 (215)
T ss_dssp EEEEECTT-----------SC---HHHHHHHHHHHGGG
T ss_pred EEEEeCCC-----------CC---HHHHHHHHHHHHHH
Confidence 99984321 11 24577777777754
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=162.06 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=111.2
Q ss_pred cCCcccee-c---CCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHH
Q 008336 336 SGDLDFVV-G---KNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 410 (569)
Q Consensus 336 ~~~~~f~~-~---~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~ 410 (569)
...|+|.+ + .+|+.+++++++||++||+|| ++||++|+.++|.|++++++|+++ +++||+|++| +.+..++|
T Consensus 23 ~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~--~v~vv~Is~D-~~~~~~~~ 99 (211)
T 2pn8_A 23 MPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI--NTEVVACSVD-SQFTHLAW 99 (211)
T ss_dssp CBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT--TEEEEEEESS-CHHHHHHH
T ss_pred CcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECC-CHHHHHHH
Confidence 34689987 5 356899999999999999999 999999999999999999999865 7999999997 45678889
Q ss_pred HhcC----C--CcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHH
Q 008336 411 FKGM----P--WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEID 478 (569)
Q Consensus 411 ~~~~----~--~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~ 478 (569)
++.+ + .+.||++.|....+++.|++. .+|++||||++|+|+++..+.. ......+++.
T Consensus 100 ~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~----------~~~~~~~ell 169 (211)
T 2pn8_A 100 INTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDL----------PVGRSVDETL 169 (211)
T ss_dssp HTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECT----------TBCCCHHHHH
T ss_pred HHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEecCC----------CCCCCHHHHH
Confidence 8877 1 478898888888999999995 6999999999999999853211 0112456666
Q ss_pred HHhhhhh
Q 008336 479 GQYNEMA 485 (569)
Q Consensus 479 ~~l~~l~ 485 (569)
+.|+.+.
T Consensus 170 ~~l~~l~ 176 (211)
T 2pn8_A 170 RLVQAFQ 176 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 6666654
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.4e-19 Score=161.02 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=94.6
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-------CH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DD 83 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-------~~ 83 (569)
..+|.++|+| +.+.+|+.+++++++|| +||+||++|||+|+.++|.|.+++++|++++ +.|++|++|. +.
T Consensus 23 ~~~g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~-v~vv~vs~d~~~~~e~~~~ 101 (181)
T 2p31_A 23 MQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHH-FNVLAFPCNQFGQQEPDSN 101 (181)
T ss_dssp ----CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECCCSTTCCCSCH
T ss_pred CCcCCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCC-EEEEEEECcCCCCCCCCCH
Confidence 3579999999 56789999999999999 9999999999999999999999999999875 9999999974 68
Q ss_pred HHHHHHHHh-CCCcccccCC--chh--HHHHHHhcCCCCcc-------EEEEECCCCcEEEc
Q 008336 84 EAFKGYFSK-MPWLAVPFSD--SET--RDKLDELFKVMGIP-------HLVILDENGKVLSD 133 (569)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~--~~~--~~~l~~~~~v~~~P-------~~~lid~~G~i~~~ 133 (569)
+.+++|+++ ++..+..+.+ ... ...+ -.|++.++| +++|||++|+|+.+
T Consensus 102 ~~~~~~~~~~~~~~~p~~~~~d~~g~~~~~~-~~~~~~~~P~~~~~~~~~~lid~~G~i~~~ 162 (181)
T 2p31_A 102 KEIESFARRTYSVSFPMFSKIAVTGTGAHPA-FKYLAQTSGKEPTWNFWKYLVAPDGKVVGA 162 (181)
T ss_dssp HHHHHHHHHHHCCCSCBBCCCCCSSTTSCHH-HHHHHHHHSCCCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHhhcCCCceeEeecccCCccchhh-hhhhhhcCCCccccceeEEEEcCCCCEEEE
Confidence 889999998 7766555432 111 1111 134567788 99999999999874
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-19 Score=162.22 Aligned_cols=115 Identities=22% Similarity=0.294 Sum_probs=101.6
Q ss_pred ccCccCCc-eecCCCceeecCCC--CCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSL--KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~--~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
+|++||+| +.+.+|+.++|+++ +|| ++|+|| ++|||+|+.++|.|++++++|++.+ +.+++|+.| +.+..++|
T Consensus 7 vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~-v~vv~is~d-~~~~~~~~ 84 (164)
T 4gqc_A 7 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN-AEVLAISVD-SPWCLKKF 84 (164)
T ss_dssp TTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSS-SEEEEEESS-CHHHHHHH
T ss_pred CCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccC-ceEEEecCC-CHHHHHHH
Confidence 79999999 56789999999998 899 888887 9999999999999999999999886 999999997 67888999
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCCC----------CccEEEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKVM----------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~----------~~P~~~lid~~G~i~~~ 133 (569)
.+++++.+..+.|.+. .+++.||+. ..|++||||++|+|++.
T Consensus 85 ~~~~~~~fp~l~D~~~--~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~ 136 (164)
T 4gqc_A 85 KDENRLAFNLLSDYNR--EVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYK 136 (164)
T ss_dssp HHHTTCCSEEEECTTS--HHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEE
T ss_pred HHhcCcccceeecCch--HHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEE
Confidence 9999987776666554 699999984 47899999999999874
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=160.05 Aligned_cols=137 Identities=18% Similarity=0.223 Sum_probs=112.5
Q ss_pred cCCcccee-cC--CC--CceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHH
Q 008336 336 SGDLDFVV-GK--NG--GKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 409 (569)
Q Consensus 336 ~~~~~f~~-~~--~g--~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~ 409 (569)
...|+|.+ +. +| +.+++++++||++||+|| ++||++|+.++|.|.+++++|+++ ++.||+|++|. .+..++
T Consensus 10 ~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~--~v~vi~Is~D~-~~~~~~ 86 (202)
T 1uul_A 10 HPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI--GCEVLACSMDS-EYSHLA 86 (202)
T ss_dssp SBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT--TEEEEEEESSC-HHHHHH
T ss_pred CcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCC-HHHHHH
Confidence 34689987 65 78 899999999999999999 999999999999999999999865 69999999984 567888
Q ss_pred HHhcC----C--CcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHH
Q 008336 410 FFKGM----P--WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 477 (569)
Q Consensus 410 ~~~~~----~--~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 477 (569)
|++.+ + .+.+|++.|....+++.|++. ++|++||||++|+|+++..+.. . .+...++|
T Consensus 87 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~-------~---~~~~~~el 156 (202)
T 1uul_A 87 WTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDL-------P---VGRDVDEA 156 (202)
T ss_dssp HHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECT-------T---BCCCHHHH
T ss_pred HHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCC-------C---CCCCHHHH
Confidence 88876 1 478888888888999999999 9999999999999999853321 0 11244556
Q ss_pred HHHhhhhh
Q 008336 478 DGQYNEMA 485 (569)
Q Consensus 478 ~~~l~~l~ 485 (569)
.+.|+++.
T Consensus 157 l~~l~~l~ 164 (202)
T 1uul_A 157 LRLVKAFQ 164 (202)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 66666654
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-18 Score=159.62 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=112.6
Q ss_pred CCcccee-cC--CCC---ceecccC-CCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHH
Q 008336 337 GDLDFVV-GK--NGG---KVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 408 (569)
Q Consensus 337 ~~~~f~~-~~--~g~---~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~ 408 (569)
..|+|.+ +. +|+ .++++++ +||++||+|| ++||++|+.++|.|.+++++++++ ++.|++|++|. .+..+
T Consensus 6 ~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d~-~~~~~ 82 (198)
T 1zof_A 6 LAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK--GFNVIGVSIDS-EQVHF 82 (198)
T ss_dssp BCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT--TEEEEEEESSC-HHHHH
T ss_pred cCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHc--CCEEEEEECCC-HHHHH
Confidence 4689988 77 898 9999999 9999999999 999999999999999999999875 69999999995 57888
Q ss_pred HHHhcC------CCcccccCchhhHHHHHhcCCC-----CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHH
Q 008336 409 EFFKGM------PWLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 477 (569)
Q Consensus 409 ~~~~~~------~~~~~~~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 477 (569)
+|++.+ ..+.+|++.|....+++.|++. ++|+++|||++|+|+.+..+.. + .....++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~---------~-~~~~~~~l 152 (198)
T 1zof_A 83 AWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDL---------P-LGRNADEM 152 (198)
T ss_dssp HHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEESS---------S-CCCHHHHH
T ss_pred HHHHhhhhcccccCceeEEEECCchHHHHHhCCcccCCcccceEEEECCCCEEEEEEecCC---------C-CCCCHHHH
Confidence 888872 2367888888888999999999 9999999999999999853311 1 12245566
Q ss_pred HHHhhhhh
Q 008336 478 DGQYNEMA 485 (569)
Q Consensus 478 ~~~l~~l~ 485 (569)
.+.|+++.
T Consensus 153 ~~~l~~l~ 160 (198)
T 1zof_A 153 LRMVDALL 160 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=143.83 Aligned_cols=112 Identities=29% Similarity=0.552 Sum_probs=95.9
Q ss_pred ccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEe-----CCCCHHHHHHHH
Q 008336 18 SARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS-----GDEDDEAFKGYF 90 (569)
Q Consensus 18 ~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~-----~d~~~~~~~~~~ 90 (569)
++|+| +.+.+|+.+++++++|| ++|+||++||++|+.++|.|.++++++.. ++.++.|+ .+.+.+.+++|+
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~~~~~ 78 (138)
T 4evm_A 1 EVADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD--DYVVLTVVSPGHKGEQSEADFKNWY 78 (138)
T ss_dssp CCCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT--TEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC--CcEEEEEEcCCCCchhhHHHHHHHH
Confidence 58999 66789999999999999 99999999999999999999999998543 48999994 456889999999
Q ss_pred HhCCC-cccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 91 SKMPW-LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~-~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+++++ .+..+.+.. ..+.+.|++.++|+++++|++|+++..
T Consensus 79 ~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~~G~i~~~ 120 (138)
T 4evm_A 79 KGLDYKNLPVLVDPS--GKLLETYGVRSYPTQAFIDKEGKLVKT 120 (138)
T ss_dssp TTCCCTTCCEEECTT--CHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred hhcCCCCeeEEECcc--hHHHHHcCcccCCeEEEECCCCcEEEe
Confidence 99988 433344433 368999999999999999999999864
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-18 Score=156.11 Aligned_cols=116 Identities=21% Similarity=0.241 Sum_probs=99.1
Q ss_pred cccCccCCc-eecC-CC--ceeecCCCCCc-EEEEEec-CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 14 LLSSSARDF-LIRS-NG--DQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 14 ~~g~~~pdf-~~~~-~g--~~v~l~~~~gk-vlv~F~a-~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
.+|.++|+| +.+. +| +.+++++++|| +||+||+ +||++|+.++|.|++++++|++.+ ++|++|++| +.+..+
T Consensus 2 ~~G~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~-v~vv~Is~d-~~~~~~ 79 (186)
T 1n8j_A 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG-VDVYSVSTD-THFTHK 79 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT-EEEEEEESS-CHHHHH
T ss_pred CCCCcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCC-CEEEEEECC-CHHHHH
Confidence 479999999 4456 58 89999999999 9999995 999999999999999999998775 999999998 567789
Q ss_pred HHHHhC----CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 88 GYFSKM----PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~----~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
+|++++ ++.+..+.|.. ..+.+.|++. .+|+++|||++|+|+..
T Consensus 80 ~~~~~~~~~~~~~fp~l~D~~--~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~ 133 (186)
T 1n8j_A 80 AWHSSSETIAKIKYAMIGDPT--GALTRNFDNMREDEGLADRATFVVDPQGIIQAI 133 (186)
T ss_dssp HHHHHCTTGGGCCSEEEECTT--SHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHcCcccCCceeEEECCc--hHHHHHhCCccCCCCceeeEEEEECCCCeEEEE
Confidence 999988 55555555533 4688999997 37999999999999975
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=155.99 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=100.2
Q ss_pred cccCccCCc-eecCC-------------C--ceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEE
Q 008336 14 LLSSSARDF-LIRSN-------------G--DQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVI 75 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~-------------g--~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv 75 (569)
.+|.++|+| +.+.+ | +.+++++++|| +||+|| ++||++|+.++|.|.+++++|++++ +.|+
T Consensus 5 ~~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~-v~vv 83 (195)
T 2bmx_A 5 TIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD-AQIL 83 (195)
T ss_dssp CTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT-EEEE
T ss_pred CCCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCC-CEEE
Confidence 469999999 44555 7 89999999999 999999 9999999999999999999998764 9999
Q ss_pred EEeCCCCHHHHHHHHHhC----CCcccccCCchhHHHHHHhcCCC-----CccEEEEECCCCcEEEc
Q 008336 76 FVSGDEDDEAFKGYFSKM----PWLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (569)
Q Consensus 76 ~v~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~ 133 (569)
+|++|. .+..++|++++ ++.+..+.+.. ..+.+.|++. ++|+++|||++|+|+..
T Consensus 84 ~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~ 147 (195)
T 2bmx_A 84 GVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIK--RELSQAAGVLNADGVADRVTFIVDPNNEIQFV 147 (195)
T ss_dssp EEESSC-HHHHHHHHHHCTTGGGCCSCEEECTT--SHHHHHHTCBCTTSSBCEEEEEECTTSBEEEE
T ss_pred EEECCC-HHHHHHHHHHhccccCCceeEEeCCc--hHHHHHhCCcccCCCccceEEEEcCCCeEEEE
Confidence 999985 77889999987 55555455533 4788999999 99999999999999875
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-18 Score=156.94 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=96.0
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-------CHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDE 84 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-------~~~ 84 (569)
.+|.++|+| +.+.+|+.+++++++|| +||+||++|||+|+.++|.|+++++++++++ ++|++|++|. +.+
T Consensus 24 ~~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~-v~vv~is~d~~~~~~~~~~~ 102 (185)
T 2gs3_A 24 RCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECG-LRILAFPCNQFGKQEPGSNE 102 (185)
T ss_dssp GGCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECCTTTTCCCSCHH
T ss_pred cCCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCC-eEEEEEECcccCCCCCCCHH
Confidence 469999999 56789999999999999 9999999999999999999999999998875 9999999873 578
Q ss_pred HHHHHHHhCCCcccccCC--chh--HHHHHHhc-------C-----CCCccEEEEECCCCcEEEc
Q 008336 85 AFKGYFSKMPWLAVPFSD--SET--RDKLDELF-------K-----VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~--~~~--~~~l~~~~-------~-----v~~~P~~~lid~~G~i~~~ 133 (569)
.+++|+++++..+..+.+ ... ...+...+ + ++.+|+++|||++|+|+..
T Consensus 103 ~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~ 167 (185)
T 2gs3_A 103 EIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR 167 (185)
T ss_dssp HHHHHHHHTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEE
T ss_pred HHHHHHHHcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEe
Confidence 899999998876554432 111 11122211 4 3447999999999999875
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=156.46 Aligned_cols=132 Identities=17% Similarity=0.111 Sum_probs=109.1
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
..|+|.+ +.+|+.+++++++||+++|+|| ++||++|+.++|.|++++++ .++.|++|+.| +++.+++|.+++
T Consensus 25 ~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-----~~~~vv~is~d-~~~~~~~~~~~~ 98 (166)
T 3p7x_A 25 FAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK-----EEGIVLTISAD-LPFAQKRWCASA 98 (166)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-----TTSEEEEEESS-CHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc-----CCCEEEEEECC-CHHHHHHHHHHc
Confidence 4589988 9999999999999999999999 78999999999999998877 25999999998 567889999988
Q ss_pred CCcccccCchh-hHHHHHhcCCCC------ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhh
Q 008336 415 PWLALPFGDAR-KASLSRKFKVSG------IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNE 483 (569)
Q Consensus 415 ~~~~~~~~~d~-~~~l~~~~~v~~------~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~ 483 (569)
+.-.+|++.|. ...+++.|++.. +|++||||++|+|++++.... +....+.+++.+.|++
T Consensus 99 ~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~---------~~~~~~~~~il~~l~~ 165 (166)
T 3p7x_A 99 GLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSE---------GTDFPDFDAALAAYKN 165 (166)
T ss_dssp TCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEECSB---------TTSCCCHHHHHHHHHT
T ss_pred CCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEcCC---------cccCCCHHHHHHHHhc
Confidence 74378988888 889999999986 899999999999999853221 1223345666666653
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=172.48 Aligned_cols=115 Identities=16% Similarity=0.259 Sum_probs=104.9
Q ss_pred CCccce-----e-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-----CChh
Q 008336 337 GDLDFV-----V-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-----RDQT 405 (569)
Q Consensus 337 ~~~~f~-----~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-----~~~~ 405 (569)
..|+|. + +.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ ++.||+|++| .+++
T Consensus 56 ~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~--~v~vi~Vs~d~~~~~d~~~ 133 (352)
T 2hyx_A 56 TAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDS--GLAVIGVHTPEYAFEKVPG 133 (352)
T ss_dssp BCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEECCSSGGGGCHH
T ss_pred cCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcC--CeEEEEEECCcccccCCHH
Confidence 358888 7 8899999999999999999999999999999999999999999875 6999999986 4678
Q ss_pred HHHHHHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 406 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
.+++|+++++ +.+|+..|....+++.|+|.++|+++|||++|+|+.+.
T Consensus 134 ~~~~~~~~~~-l~fpv~~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~~ 181 (352)
T 2hyx_A 134 NVAKGAANLG-ISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIK 181 (352)
T ss_dssp HHHHHHHHHT-CCSCEEECTTSHHHHHTTCCEESEEEEECTTSBEEEEE
T ss_pred HHHHHHHHcC-CCccEEeCCcHHHHHHcCCCccCEEEEEeCCCeEEEEE
Confidence 8999999887 67888888888999999999999999999999999984
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=159.15 Aligned_cols=117 Identities=17% Similarity=0.305 Sum_probs=104.0
Q ss_pred cccCccCCc-ee-cCCCceeecCCCCCc--EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CC
Q 008336 14 LLSSSARDF-LI-RSNGDQVKLDSLKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------ED 82 (569)
Q Consensus 14 ~~g~~~pdf-~~-~~~g~~v~l~~~~gk--vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~ 82 (569)
.+|.++|+| +. +.+|+.+++++++|| +||+||++||++|+.++|.|.++++++.+++ +.+++|++| ++
T Consensus 19 ~~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~-v~vv~v~~d~~~~~~~d~ 97 (196)
T 2ywi_A 19 PLGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKG-VSFVAINSNDAEQYPEDS 97 (196)
T ss_dssp CTTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGT-CEEEEEECSCTTTCGGGS
T ss_pred CcCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCC-cEEEEEECCccccccccC
Confidence 579999999 66 789999999999997 9999999999999999999999999998774 999999997 57
Q ss_pred HHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
.+.+++|+++++..+..+.+.. ..+.+.|++.++|+++|||++|+++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~~G~i~~~ 146 (196)
T 2ywi_A 98 PENMKKVAEELGYPFPYLYDET--QEVAKAYDAACTPDFYIFDRDLKCVYR 146 (196)
T ss_dssp HHHHHHHHHHHTCCSCEEECSS--CHHHHHHTCCEESEEEEEETTCBEEEE
T ss_pred HHHHHHHHHHcCCCceEEECCc--hHHHHHhCCCCCCeEEEEcCCCeEEEc
Confidence 8899999999887666555543 368899999999999999999999875
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.4e-18 Score=156.22 Aligned_cols=116 Identities=14% Similarity=0.172 Sum_probs=95.2
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSF 407 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~~ 407 (569)
...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ ++.|++|++| .+.+.+
T Consensus 25 ~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~e~~~~~~~ 102 (183)
T 2obi_A 25 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAEC--GLRILAFPCNQFGKQEPGSNEEI 102 (183)
T ss_dssp CSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCHHHH
T ss_pred CcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcC--CeEEEEEECCCCCCCCCCCHHHH
Confidence 34589988 9999999999999999999999999999999999999999999876 6999999987 367789
Q ss_pred HHHHhcCCCcccccCc--hhhHH----HHHhc-------C-----CCCccEEEEECCCCcEEEcc
Q 008336 408 DEFFKGMPWLALPFGD--ARKAS----LSRKF-------K-----VSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 408 ~~~~~~~~~~~~~~~~--d~~~~----l~~~~-------~-----v~~~Pt~~lid~~G~i~~~~ 454 (569)
++|+++++ +.+|+.. |.+.. +.+.+ + ++.+|+++|||++|+|+.+.
T Consensus 103 ~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~ 166 (183)
T 2obi_A 103 KEFAAGYN-VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRY 166 (183)
T ss_dssp HHHHHTTT-CCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEE
T ss_pred HHHHHHcC-CCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEe
Confidence 99998887 5577654 32222 22111 4 45579999999999999984
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-18 Score=161.03 Aligned_cols=117 Identities=20% Similarity=0.251 Sum_probs=101.7
Q ss_pred cCCcccee-cC---CCCceecccCCCCEEEEEEec-CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHH
Q 008336 336 SGDLDFVV-GK---NGGKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 410 (569)
Q Consensus 336 ~~~~~f~~-~~---~g~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~ 410 (569)
...|+|.+ +. +|+++++++++||++||+||+ +||++|+.++|.|++++++|+++ ++.||+|++|. .+...+|
T Consensus 44 ~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~--~v~vv~Is~D~-~~~~~~~ 120 (222)
T 3ztl_A 44 RPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR--NCQVIACSTDS-QYSHLAW 120 (222)
T ss_dssp EECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTT--TEEEEEEESSC-HHHHHHH
T ss_pred CCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEECCC-HHHHHHH
Confidence 34689987 43 559999999999999999996 99999999999999999999865 69999999985 4566777
Q ss_pred HhcC------CCcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccc
Q 008336 411 FKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 411 ~~~~------~~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~ 455 (569)
.+.+ ..+.+|++.|....+++.|++. .+|++||||++|+|+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~ 177 (222)
T 3ztl_A 121 DNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITI 177 (222)
T ss_dssp HHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEE
T ss_pred HHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEe
Confidence 7765 2578899888889999999999 8999999999999999854
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=156.55 Aligned_cols=182 Identities=13% Similarity=0.186 Sum_probs=116.3
Q ss_pred CCCCc-EEEEEecC-CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 35 SLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 35 ~~~gk-vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
...++ ++++||++ ||++|+.+.|.+.++++. . +++.++.|+++.... ..+++.
T Consensus 19 ~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~--~~v~~~~vd~~~~~~----------------------~~~~~~ 73 (226)
T 1a8l_A 19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-T--DKLSYEIVDFDTPEG----------------------KELAKR 73 (226)
T ss_dssp GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-C--TTEEEEEEETTSHHH----------------------HHHHHH
T ss_pred hcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-C--CceEEEEEeCCCccc----------------------HHHHHH
Confidence 45567 88999999 999999999999998754 2 359999999885111 358999
Q ss_pred cCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCceeee
Q 008336 113 FKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISV 192 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~ 192 (569)
|+|.++|+++++ ++|+... .+..|. .....+..++......... . ...+++.+..
T Consensus 74 ~~v~~~Pt~~~~-~~g~~~~------~~~~G~----~~~~~l~~~l~~~l~~~~~--~------------~~l~~~~~~~ 128 (226)
T 1a8l_A 74 YRIDRAPATTIT-QDGKDFG------VRYFGL----PAGHEFAAFLEDIVDVSRE--E------------TNLMDETKQA 128 (226)
T ss_dssp TTCCSSSEEEEE-ETTBCCS------EEEESC----CCTTHHHHHHHHHHHHHHT--C------------CCCCHHHHHH
T ss_pred cCCCcCceEEEE-cCCceee------EEEecc----CcHHHHHHHHHHHHhhcCC--C------------CCCCHHHHHH
Confidence 999999999999 4553210 011111 1122333333221110000 0 0011111111
Q ss_pred -ccccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCC-CceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHH
Q 008336 193 -SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG-ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 270 (569)
Q Consensus 193 -~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~-~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~ 270 (569)
....++.+++.|+++||++|+.+.|.+.+++..+..++ ..+.++.++.+. ...++
T Consensus 129 ~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~-----------------------~~~l~ 185 (226)
T 1a8l_A 129 IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE-----------------------YPEWA 185 (226)
T ss_dssp HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG-----------------------CHHHH
T ss_pred HHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEccc-----------------------CHHHH
Confidence 11234555999999999999999999999999887321 134444444433 35688
Q ss_pred hhcccCCCceEEEECCCCCc
Q 008336 271 RYFELSTLPTLVIIGPDGKT 290 (569)
Q Consensus 271 ~~f~v~~~Ptlvi~~~~g~~ 290 (569)
+.|+|.++||++++. +|+.
T Consensus 186 ~~~~v~~~Pt~~~~~-~G~~ 204 (226)
T 1a8l_A 186 DQYNVMAVPKIVIQV-NGED 204 (226)
T ss_dssp HHTTCCSSCEEEEEE-TTEE
T ss_pred HhCCCcccCeEEEEe-CCce
Confidence 999999999999885 5543
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-18 Score=154.14 Aligned_cols=114 Identities=15% Similarity=0.197 Sum_probs=101.8
Q ss_pred cCCcccee-cCCCCceecccCCCC--EEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGK--TILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk--~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
...|+|.+ +.+|+++++++++|| ++||+|| ++||++|+.++|.|.+++++++++ + .|++|++| +++..++|+
T Consensus 11 ~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~-~vv~is~d-~~~~~~~~~ 86 (159)
T 2a4v_A 11 DPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY--A-AVFGLSAD-SVTSQKKFQ 86 (159)
T ss_dssp CBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT--C-EEEEEESC-CHHHHHHHH
T ss_pred CCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhC--C-cEEEEeCC-CHHHHHHHH
Confidence 34589988 999999999999987 8999997 999999999999999999999876 5 99999999 567888999
Q ss_pred hcCCCcccccCchhhHHHHHhcCCCCcc------EEEEECCCCcEEEccc
Q 008336 412 KGMPWLALPFGDARKASLSRKFKVSGIP------MLVAIGPSGRTITKEA 455 (569)
Q Consensus 412 ~~~~~~~~~~~~d~~~~l~~~~~v~~~P------t~~lid~~G~i~~~~~ 455 (569)
++++ +.+|++.|....+++.|++...| ++||| ++|+|+++..
T Consensus 87 ~~~~-~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~~ 134 (159)
T 2a4v_A 87 SKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRV 134 (159)
T ss_dssp HHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEE
T ss_pred HHhC-CCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEEc
Confidence 8887 57898888888999999999998 89999 9999999853
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.2e-18 Score=153.83 Aligned_cols=120 Identities=22% Similarity=0.336 Sum_probs=99.3
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCH-hhHhhHHHHHHHHHHhcCCC-CEEEEEEeCC---CCHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG-DFEVIFVSGD---EDDEAF 86 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~-~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d---~~~~~~ 86 (569)
.+|.++|+| +.+.+|+.+++++++|| +||+||++||+ +|+.++|.|.++++++++.+ ++.|++|++| ++.+.+
T Consensus 8 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~ 87 (174)
T 1xzo_A 8 PLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQL 87 (174)
T ss_dssp CCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHH
T ss_pred ccccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHH
Confidence 479999999 56789999999999999 99999999999 99999999999999998775 5999999998 578899
Q ss_pred HHHHHhCCCcc---cccCCchh--HHHHHH------------hcCCCCccEEEEECCCCcEEEc
Q 008336 87 KGYFSKMPWLA---VPFSDSET--RDKLDE------------LFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~~~~~---~~~~~~~~--~~~l~~------------~~~v~~~P~~~lid~~G~i~~~ 133 (569)
++|+++++..+ ..+.+.+. ...+.. .|++..+|+++|||++|+|+..
T Consensus 88 ~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~ 151 (174)
T 1xzo_A 88 KKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD 151 (174)
T ss_dssp HHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred HHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEE
Confidence 99999998766 33444222 112221 1457889999999999999874
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=157.85 Aligned_cols=116 Identities=18% Similarity=0.226 Sum_probs=100.7
Q ss_pred cccCccCCc-eecC--CC--ceeecCCC-CCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHH
Q 008336 14 LLSSSARDF-LIRS--NG--DQVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85 (569)
Q Consensus 14 ~~g~~~pdf-~~~~--~g--~~v~l~~~-~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~ 85 (569)
.+|.++|+| +.+. +| +.++++++ +|| +||+|| ++||++|+.++|.|.+++++|++.+ ++||+|++| +.+.
T Consensus 22 ~~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~-v~vv~Is~D-~~~~ 99 (213)
T 2i81_A 22 YVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERN-VELLGCSVD-SKYT 99 (213)
T ss_dssp CBTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTT-EEEEEEESS-CHHH
T ss_pred cCCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCC-CHHH
Confidence 579999999 4566 89 89999999 999 999999 9999999999999999999998764 999999998 6778
Q ss_pred HHHHHHhC-------CCcccccCCchhHHHHHHhcCCC-----CccEEEEECCCCcEEEc
Q 008336 86 FKGYFSKM-------PWLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~ 133 (569)
.++|+++. ++.+..+.|.. ..+.+.|++. .+|+++|||++|+|+..
T Consensus 100 ~~~~~~~~~~~~g~~~~~fp~l~D~~--~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~ 157 (213)
T 2i81_A 100 HLAWKKTPLAKGGIGNIKHTLLSDIT--KSISKDYNVLFDDSVSLRAFVLIDMNGIVQHL 157 (213)
T ss_dssp HHHHHSSCGGGTCCCSCSSEEEECTT--SHHHHHTTCEETTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHHHhhCCccCCCceEEECCc--hHHHHHhCCccccCCcccEEEEECCCCEEEEE
Confidence 88998877 44554455533 4799999999 89999999999999975
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-18 Score=152.99 Aligned_cols=118 Identities=15% Similarity=0.178 Sum_probs=99.0
Q ss_pred ccccccCccCCc-ee-cCCCceeecCC-CCCc-EEEEE-ecCCCHhhH-hhHHHHHHHHHHhcCCCCEEEEE-EeCCCCH
Q 008336 11 IQSLLSSSARDF-LI-RSNGDQVKLDS-LKGK-IGLYF-SASWCGPCQ-RFTPILAEVYNELSRQGDFEVIF-VSGDEDD 83 (569)
Q Consensus 11 ~~~~~g~~~pdf-~~-~~~g~~v~l~~-~~gk-vlv~F-~a~wC~~C~-~~~p~l~~~~~~~~~~g~~~vv~-v~~d~~~ 83 (569)
.+..+|.++|+| +. +.+|+.++|++ ++|| ++|+| |++|||+|+ .++|.|.+++++|++.| ++||+ |+.| +.
T Consensus 13 ~~~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~g-v~vv~~iS~D-~~ 90 (173)
T 3mng_A 13 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG-VQVVACLSVN-DA 90 (173)
T ss_dssp CCCCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTT-CCEEEEEESS-CH
T ss_pred CCCCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEEcCC-CH
Confidence 444789999999 55 67999999999 6999 66555 699999999 59999999999999886 89997 9988 57
Q ss_pred HHHHHHHHhCCCc--ccccCCchhHHHHHHhcCCC-------------CccEEEEECCCCcEEEc
Q 008336 84 EAFKGYFSKMPWL--AVPFSDSETRDKLDELFKVM-------------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 84 ~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~v~-------------~~P~~~lid~~G~i~~~ 133 (569)
...++|+++.+.. +..+.|.+ ..+++.||+. ..|++|||| +|+|++.
T Consensus 91 ~~~~~f~~~~~~~~~fp~l~D~~--~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~ 152 (173)
T 3mng_A 91 FVTGEWGRAHKAEGKVRLLADPT--GAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKAL 152 (173)
T ss_dssp HHHHHHHHHTTCTTTCEEEECTT--CHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEE
T ss_pred HHHHHHHHHhCCCCceEEEECCC--hHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEE
Confidence 8889999999876 55556654 4789999985 359999999 9999874
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=151.91 Aligned_cols=119 Identities=27% Similarity=0.291 Sum_probs=100.5
Q ss_pred ccCccC-Cc-eecCCCceeecCCCCCc-EEEEEecCCCH-hhHhhHHHHHHHHHHhcCCC-CEEEEEEeCC--CCHHHHH
Q 008336 15 LSSSAR-DF-LIRSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG-DFEVIFVSGD--EDDEAFK 87 (569)
Q Consensus 15 ~g~~~p-df-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~-~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d--~~~~~~~ 87 (569)
+|.++| +| +.+.+|+.+++++++|| +||+||++||+ .|..++|.|+++++++.+.+ ++++++|++| ++.+.++
T Consensus 3 ~G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~ 82 (170)
T 3me7_A 3 LGTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIK 82 (170)
T ss_dssp TTCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHH
T ss_pred CCCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHH
Confidence 699999 99 66789999999999999 99999999997 79999999999999997533 6999999998 5788999
Q ss_pred HHHHhCCCcccc----c-CCchhHHHHHHhcCC---------CCccEEEEECCCCcEEEc
Q 008336 88 GYFSKMPWLAVP----F-SDSETRDKLDELFKV---------MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~~~~~~~----~-~~~~~~~~l~~~~~v---------~~~P~~~lid~~G~i~~~ 133 (569)
+|+++++..... + .+.+....+++.||+ ...|+++|||++|+|+..
T Consensus 83 ~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~ 142 (170)
T 3me7_A 83 RFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDY 142 (170)
T ss_dssp HHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEE
T ss_pred HHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEE
Confidence 999999865432 2 344555678888774 456899999999999863
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-18 Score=156.71 Aligned_cols=116 Identities=18% Similarity=0.235 Sum_probs=100.2
Q ss_pred cccCccCCc-eecC--CCc---eeecCCC-CCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHH
Q 008336 14 LLSSSARDF-LIRS--NGD---QVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84 (569)
Q Consensus 14 ~~g~~~pdf-~~~~--~g~---~v~l~~~-~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~ 84 (569)
.+|.++|+| +.+. +|+ .++++++ +|| ++|+|| ++||++|+.++|.|.+++++|++.+ +.|++|++|. .+
T Consensus 2 ~~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~-v~vv~Is~d~-~~ 79 (198)
T 1zof_A 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG-FNVIGVSIDS-EQ 79 (198)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT-EEEEEEESSC-HH
T ss_pred CCCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC-CEEEEEECCC-HH
Confidence 369999999 5566 898 9999999 999 999999 9999999999999999999998774 9999999984 67
Q ss_pred HHHHHHHh-------CCCcccccCCchhHHHHHHhcCCC-----CccEEEEECCCCcEEEc
Q 008336 85 AFKGYFSK-------MPWLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (569)
Q Consensus 85 ~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~ 133 (569)
..++|+++ +++.+..+.+.. ..+.+.|++. ++|+++|||++|+|+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~ 138 (198)
T 1zof_A 80 VHFAWKNTPVEKGGIGQVSFPMVADIT--KSISRDYDVLFEEAIALRGAFLIDKNMKVRHA 138 (198)
T ss_dssp HHHHHHTSCGGGTCCCCCSSCEEECTT--SHHHHHTTCEETTTEECEEEEEEETTTEEEEE
T ss_pred HHHHHHHhhhhcccccCceeEEEECCc--hHHHHHhCCcccCCcccceEEEECCCCEEEEE
Confidence 88889887 555554444433 4688999999 99999999999999874
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.9e-18 Score=156.01 Aligned_cols=115 Identities=17% Similarity=0.242 Sum_probs=99.7
Q ss_pred ccCccCCc-eecC--CC--ceeecCCC-CCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 15 LSSSARDF-LIRS--NG--DQVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 15 ~g~~~pdf-~~~~--~g--~~v~l~~~-~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
+|+++|+| +.+. +| +.++++++ +|| +||+|| ++||++|+.++|.|.+++++|++.+ +.|++|++| +.+..
T Consensus 2 ~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~-v~vv~Is~d-~~~~~ 79 (192)
T 2h01_A 2 FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN-VELLGCSVD-SKFTH 79 (192)
T ss_dssp CSSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT-EEEEEEESS-CHHHH
T ss_pred CCCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEEeC-CHHHH
Confidence 69999999 5566 89 99999999 999 999999 9999999999999999999998765 999999998 57788
Q ss_pred HHHHHhC-------CCcccccCCchhHHHHHHhcCCC-----CccEEEEECCCCcEEEc
Q 008336 87 KGYFSKM-------PWLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~ 133 (569)
++|++++ ++.+..+.+.. ..+.+.|++. .+|+++|||++|+|+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~ 136 (192)
T 2h01_A 80 LAWKKTPLSQGGIGNIKHTLISDIS--KSIARSYDVLFNESVALRAFVLIDKQGVVQHL 136 (192)
T ss_dssp HHHHTSCGGGTCCCSCSSEEEECTT--SHHHHHTTCEETTTEECCEEEEECTTSBEEEE
T ss_pred HHHHHhHHhhCCccCCCcCeEECCc--HHHHHHhCCcCcCCceeeEEEEEcCCCEEEEE
Confidence 8998877 44444444433 4789999999 89999999999999875
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=157.73 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=98.3
Q ss_pred cccCccCCcee-cC---CCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 14 LLSSSARDFLI-RS---NGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 14 ~~g~~~pdf~~-~~---~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
.+|.++|+|.+ +. +|+.+++++++|| +||+|| ++||++|+.++|.|++++++|++.+ ++||+|++| +.+..+
T Consensus 20 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~-v~vv~Is~D-~~~~~~ 97 (211)
T 2pn8_A 20 FQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN-TEVVACSVD-SQFTHL 97 (211)
T ss_dssp CSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT-EEEEEEESS-CHHHHH
T ss_pred CCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECC-CHHHHH
Confidence 57999999944 43 4689999999999 999999 9999999999999999999998775 999999997 567788
Q ss_pred HHHHhC-------CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 88 GYFSKM-------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~-------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
+|+++. ++.+..+.|.. ..+.+.|++. .+|++||||++|+|+..
T Consensus 98 ~~~~~~~~~~g~~~~~fp~l~D~~--~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~ 154 (211)
T 2pn8_A 98 AWINTPRRQGGLGPIRIPLLSDLT--HQISKDYGVYLEDSGHTLRGLFIIDDKGILRQI 154 (211)
T ss_dssp HHHTSCGGGTCCCSCSSCEEECTT--SHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHhhhccCccCCceEEEECCc--hHHHHHcCCcccCCCcccceEEEECCCCEEEEE
Confidence 898877 44444445543 4789999995 69999999999999975
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-18 Score=158.40 Aligned_cols=118 Identities=20% Similarity=0.298 Sum_probs=97.4
Q ss_pred ccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-------CHHH
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDEA 85 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-------~~~~ 85 (569)
.|.++|+| +.+.+|+.+++++++|| +||+|||+||++|+.++|.|.+++++|++++ +.|++|++|. +.+.
T Consensus 24 ~~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~-v~vv~vs~d~~~~~~~~~~~~ 102 (190)
T 2vup_A 24 AASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG-FTVLAFPCNQFGGQEPGNEEE 102 (190)
T ss_dssp CCCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-CEEEEEECCCSTTCCCSCHHH
T ss_pred CCCcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCC-eEEEEEEcCccCCCCCCCHHH
Confidence 47899999 56789999999999999 9999999999999999999999999998875 9999999984 7888
Q ss_pred HHHHH-HhCCCcccccCC--chhH--HHH-----HHhcCCCCcc------EEEEECCCCcEEEc
Q 008336 86 FKGYF-SKMPWLAVPFSD--SETR--DKL-----DELFKVMGIP------HLVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~-~~~~~~~~~~~~--~~~~--~~l-----~~~~~v~~~P------~~~lid~~G~i~~~ 133 (569)
+++|+ ++++..+..+.+ .... ..+ ...|++.++| +++|||++|+|+..
T Consensus 103 ~~~~~~~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~ 166 (190)
T 2vup_A 103 IKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVER 166 (190)
T ss_dssp HHHHHHHHHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHhcCCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEE
Confidence 99999 787766555432 1110 112 1346899999 99999999999874
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=5e-18 Score=156.70 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=94.2
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSF 407 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~ 407 (569)
...|+|.+ +.+|+++++++++||++||+||++||++|+.++|.|++++++++++ ++.|++|++|. +.+.+
T Consensus 27 ~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~is~d~~~~~~~~~~~~~ 104 (185)
T 2gs3_A 27 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC--GLRILAFPCNQFGKQEPGSNEEI 104 (185)
T ss_dssp CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCTTTTCCCSCHHHH
T ss_pred CCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcC--CeEEEEEECcccCCCCCCCHHHH
Confidence 34589988 9999999999999999999999999999999999999999999876 69999999873 46778
Q ss_pred HHHHhcCCCcccccCc--hhhHH----HHHhc-------C-----CCCccEEEEECCCCcEEEccc
Q 008336 408 DEFFKGMPWLALPFGD--ARKAS----LSRKF-------K-----VSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 408 ~~~~~~~~~~~~~~~~--d~~~~----l~~~~-------~-----v~~~Pt~~lid~~G~i~~~~~ 455 (569)
++|+++++ +.+|+.. |..+. +.+.+ + ++.+|++||||++|+|+.+..
T Consensus 105 ~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~ 169 (185)
T 2gs3_A 105 KEFAAGYN-VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYG 169 (185)
T ss_dssp HHHHHHTT-CCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEEC
T ss_pred HHHHHHcC-CCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeC
Confidence 89998876 4566653 22221 22111 4 344799999999999999853
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-18 Score=155.89 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=97.8
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDD 83 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~ 83 (569)
-.+|.++|+| +.+.+|+.+++++++|| +||+||++||++|+.++|.|.+++++|++++ +.|++|++| ++.
T Consensus 21 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~-v~vv~vs~d~~~~~e~~~~ 99 (183)
T 2obi_A 21 WRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECG-LRILAFPCNQFGKQEPGSN 99 (183)
T ss_dssp GGGCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECCCSTTCCCSCH
T ss_pred CcccCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCC-eEEEEEECCCCCCCCCCCH
Confidence 3679999999 56789999999999999 9999999999999999999999999998875 999999987 367
Q ss_pred HHHHHHHHhCCCcccccC--Cchh--HHHHHHhc-------C-----CCCccEEEEECCCCcEEEc
Q 008336 84 EAFKGYFSKMPWLAVPFS--DSET--RDKLDELF-------K-----VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~--~~~~--~~~l~~~~-------~-----v~~~P~~~lid~~G~i~~~ 133 (569)
+.+++|++++++.+..+. +... ...+.+.+ + +..+|+++|||++|+|+.+
T Consensus 100 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~ 165 (183)
T 2obi_A 100 EEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR 165 (183)
T ss_dssp HHHHHHHHTTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHHcCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEE
Confidence 899999999887665554 2221 11122211 4 4557999999999999874
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=155.61 Aligned_cols=116 Identities=23% Similarity=0.243 Sum_probs=99.6
Q ss_pred cccCccCCce-ecC--CC--ceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 14 LLSSSARDFL-IRS--NG--DQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 14 ~~g~~~pdf~-~~~--~g--~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
.+|.++|+|. .+. +| +.+++++++|| +||+|| ++||++|+.++|.|.+++++|++.+ ++|++|++| +.+..
T Consensus 7 ~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~-v~vi~Is~D-~~~~~ 84 (202)
T 1uul_A 7 EDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG-CEVLACSMD-SEYSH 84 (202)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT-EEEEEEESS-CHHHH
T ss_pred cCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEeCC-CHHHH
Confidence 5799999994 454 78 89999999999 999999 9999999999999999999998765 999999998 56778
Q ss_pred HHHHHhC-------CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 87 KGYFSKM-------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
++|++++ +..+..+.+.. ..+.+.|++. ++|+++|||++|+|+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~p~l~D~~--~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~ 142 (202)
T 1uul_A 85 LAWTSIERKRGGLGQMNIPILADKT--KCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQI 142 (202)
T ss_dssp HHHHHSCGGGTCCCSCSSCEEECTT--CHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHHhhCCCCCCceeEEECCc--hHHHHHcCCccCCCCceeeEEEEECCCCEEEEE
Confidence 8898877 44444444433 4789999999 99999999999999875
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.4e-19 Score=162.24 Aligned_cols=118 Identities=20% Similarity=0.291 Sum_probs=95.5
Q ss_pred ccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHH
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEA 85 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~~ 85 (569)
.+.++|+| +.+.+|+.+++++++|| +||+|||+||++|+.++|.|.+++++|++++ ++|++|++| ++.+.
T Consensus 22 ~~~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~-~~vi~is~d~~~~~e~~~~~~ 100 (187)
T 3dwv_A 22 AASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG-FTVLAFPSNQFGGQEPGNEEE 100 (187)
T ss_dssp TCCSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGT-CEEEEEEBCCCSSCSSSBTTH
T ss_pred CCCccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCC-eEEEEEECcccCCCCCCCHHH
Confidence 37889999 66789999999999999 9999999999999999999999999999875 999999998 46788
Q ss_pred HHHHHHhC-CCcccccCC--chh--HHHHH--------HhcCCCCcc---EEEEECCCCcEEEc
Q 008336 86 FKGYFSKM-PWLAVPFSD--SET--RDKLD--------ELFKVMGIP---HLVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~~~~-~~~~~~~~~--~~~--~~~l~--------~~~~v~~~P---~~~lid~~G~i~~~ 133 (569)
+++|+++. +..+..+.+ ... ...+. ..+++..+| +++|||++|+|+..
T Consensus 101 ~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~ 164 (187)
T 3dwv_A 101 IKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVER 164 (187)
T ss_dssp HHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEE
Confidence 89998844 665554432 111 11121 345677788 99999999999875
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-18 Score=154.95 Aligned_cols=133 Identities=15% Similarity=0.143 Sum_probs=108.3
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
..|+|.+ +.+|+.+++++++||++||+|| ++||++|+.++|.|+++++++ . +++||+|++|. ++..++|.+++
T Consensus 26 ~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~---~v~vv~Is~d~-~~~~~~~~~~~ 100 (171)
T 2yzh_A 26 RAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM-E---GVDVTVVSMDL-PFAQKRFCESF 100 (171)
T ss_dssp BCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T---TEEEEEEESSC-HHHHHHHHHHT
T ss_pred cCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-C---CceEEEEeCCC-HHHHHHHHHHc
Confidence 3589988 9999999999999999999999 899999999999999999988 3 59999999984 57788999988
Q ss_pred CCcccccCch-hhHHHHHhcCCCC---------ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhh
Q 008336 415 PWLALPFGDA-RKASLSRKFKVSG---------IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEM 484 (569)
Q Consensus 415 ~~~~~~~~~d-~~~~l~~~~~v~~---------~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l 484 (569)
+.-.+|++.| ....+ +.|++.. +|+++|||++|+|+++..+.. +....+.+++.+.|+++
T Consensus 101 ~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~---------~~~~~~~~~ll~~l~~l 170 (171)
T 2yzh_A 101 NIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPE---------ITEEPNYDEVVNKVKEL 170 (171)
T ss_dssp TCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSB---------TTSCCCCHHHHHHHHHC
T ss_pred CCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCC---------cCCCCCHHHHHHHHHhh
Confidence 7337888888 77788 9999862 699999999999999853211 11223345666666654
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8e-18 Score=154.64 Aligned_cols=118 Identities=15% Similarity=0.201 Sum_probs=93.9
Q ss_pred ccCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhH
Q 008336 335 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTS 406 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~ 406 (569)
....|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ ++.|++|++|. +.+.
T Consensus 15 ~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~~~vi~is~d~~~~~~~d~~~~ 92 (180)
T 3kij_A 15 INSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPS--HFSVLAFPCNQFGESEPRPSKE 92 (180)
T ss_dssp CCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTT--SEEEEEEECCCSTTCCCSCHHH
T ss_pred cCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccC--CeEEEEEECCccccCCCCCHHH
Confidence 344589988 9999999999999999999999999999999999999999999875 69999999875 7788
Q ss_pred HHHHHhc-CCCcccccCc-----hhhH-HHHHhc--CCCCccE----EEEECCCCcEEEccc
Q 008336 407 FDEFFKG-MPWLALPFGD-----ARKA-SLSRKF--KVSGIPM----LVAIGPSGRTITKEA 455 (569)
Q Consensus 407 ~~~~~~~-~~~~~~~~~~-----d~~~-~l~~~~--~v~~~Pt----~~lid~~G~i~~~~~ 455 (569)
+++|+++ ++ +.+|+.. +... .+...+ .+.++|+ +||||++|+|+.+..
T Consensus 93 ~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~ 153 (180)
T 3kij_A 93 VESFARKNYG-VTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWR 153 (180)
T ss_dssp HHHHHHHHHC-CCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEEC
T ss_pred HHHHHHHhcC-CCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEEC
Confidence 9999988 65 5555532 1111 111111 1346888 999999999999853
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=151.37 Aligned_cols=139 Identities=17% Similarity=0.217 Sum_probs=102.7
Q ss_pred ccCCcccee-cCCCCceecccCCCCEEEEEEecCCCh-hHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC---CChhHHHH
Q 008336 335 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERNESLEVVFISSD---RDQTSFDE 409 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d---~~~~~~~~ 409 (569)
..+.|+|.+ |.+|+++++++++||+|||+||++||+ +|...++.|.++++.+++...++.+|+||+| ++++.+++
T Consensus 9 ~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~ 88 (170)
T 4hde_A 9 NWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKA 88 (170)
T ss_dssp CBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHH
T ss_pred CCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHH
Confidence 345699988 999999999999999999999999997 7999999999999999876667999999998 46788999
Q ss_pred HHhcCCC--cccccCch-----hhHHHHHhcC----------CCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHH
Q 008336 410 FFKGMPW--LALPFGDA-----RKASLSRKFK----------VSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEE 472 (569)
Q Consensus 410 ~~~~~~~--~~~~~~~d-----~~~~l~~~~~----------v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~ 472 (569)
|++.++. ..+.++.+ ........|+ +...|++||||++|+|+.... | ....
T Consensus 89 y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~-------g-----~~~~ 156 (170)
T 4hde_A 89 FIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYS-------G-----ISNT 156 (170)
T ss_dssp HHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEE-------S-----SSSC
T ss_pred HHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEEC-------C-----CCCC
Confidence 9987641 22222211 1111222233 345689999999999997632 1 1122
Q ss_pred HHHHHHHHhhhhh
Q 008336 473 RMKEIDGQYNEMA 485 (569)
Q Consensus 473 ~~~~l~~~l~~l~ 485 (569)
..++|.+.|+.|+
T Consensus 157 ~~~~l~~~ik~Ll 169 (170)
T 4hde_A 157 PYEDIIRDMKRLA 169 (170)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 3466777777765
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=150.63 Aligned_cols=116 Identities=21% Similarity=0.177 Sum_probs=98.7
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEec-CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a-~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
-.+|.++|+| +.+.+|+.+++++++|| ++|+||+ +||++|+.++|.|+++++++ . +++|++|+.| +.+..++|
T Consensus 16 ~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~-~v~vv~is~d-~~~~~~~~ 91 (163)
T 1psq_A 16 LQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--D-NTVVLTVSMD-LPFAQKRW 91 (163)
T ss_dssp CCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T-TEEEEEEESS-CHHHHHHH
T ss_pred CCCCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--C-CcEEEEEECC-CHHHHHHH
Confidence 3579999999 56789999999999999 9999995 99999999999999999998 4 4999999998 56778999
Q ss_pred HHhCCC-cccccCCchhHHHHHHhcCCC----C--ccEEEEECCCCcEEEc
Q 008336 90 FSKMPW-LAVPFSDSETRDKLDELFKVM----G--IPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~-~~~~~~~~~~~~~l~~~~~v~----~--~P~~~lid~~G~i~~~ 133 (569)
++++++ .+..+.|. ....+.+.|++. + .|+++|||++|+|+..
T Consensus 92 ~~~~~~~~~~~l~D~-~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~ 141 (163)
T 1psq_A 92 CGAEGLDNAIMLSDY-FDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYV 141 (163)
T ss_dssp HHHHTCTTSEEEECT-TTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEE
T ss_pred HHhcCCCCcEEecCC-chhHHHHHhCCccccCCceEEEEEEEcCCCeEEEE
Confidence 998887 55545551 224688999987 3 3999999999999875
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=157.70 Aligned_cols=116 Identities=18% Similarity=0.255 Sum_probs=98.2
Q ss_pred cccCccCCce-ecC---CCceeecCCCCCc-EEEEEec-CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 14 LLSSSARDFL-IRS---NGDQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 14 ~~g~~~pdf~-~~~---~g~~v~l~~~~gk-vlv~F~a-~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
.+|.++|+|. .++ +|+.+++++++|| +||+||+ +||++|+.++|.|++++++|++++ +.||+|++|. .+...
T Consensus 41 ~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~-v~vv~Is~D~-~~~~~ 118 (222)
T 3ztl_A 41 LPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRN-CQVIACSTDS-QYSHL 118 (222)
T ss_dssp CSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTT-EEEEEEESSC-HHHHH
T ss_pred cCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEECCC-HHHHH
Confidence 5799999994 433 5599999999999 9999997 999999999999999999999775 9999999984 56677
Q ss_pred HHHHhC-------CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 88 GYFSKM-------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~-------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
+|++.. +..+..+.|.+ ..+.+.|++. .+|+++|||++|+|+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~ 175 (222)
T 3ztl_A 119 AWDNLDRKSGGLGHMKIPLLADRK--QEISKAYGVFDEEDGNAFRGLFIIDPNGILRQI 175 (222)
T ss_dssp HHHHSCGGGTSCCSCSSCEEECSS--SHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEE
T ss_pred HHHHHhhhhccccccceeEEeCCc--hHHHHHcCCeecCCCCccceEEEECCCCeEEEE
Confidence 887765 55555555544 4789999998 89999999999999875
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.3e-18 Score=159.55 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=112.8
Q ss_pred cCCcccee----cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHH
Q 008336 336 SGDLDFVV----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 410 (569)
Q Consensus 336 ~~~~~f~~----~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~ 410 (569)
...|+|.+ +.+|+.+++++++||++||+|| ++||++|+.++|.|.+++++|+++ +++||+|++|. .+..++|
T Consensus 31 ~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~--~v~vv~Is~D~-~~~~~~~ 107 (220)
T 1zye_A 31 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV--NCEVVAVSVDS-HFSHLAW 107 (220)
T ss_dssp SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT--TEEEEEEESSC-HHHHHHH
T ss_pred CCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCC-HHHHHHH
Confidence 34688876 3578999999999999999999 999999999999999999999875 69999999994 4677888
Q ss_pred HhcC----C--CcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHH
Q 008336 411 FKGM----P--WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEID 478 (569)
Q Consensus 411 ~~~~----~--~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~ 478 (569)
++.+ + .+.+|++.|....+++.|++. ++|++||||++|+|+++..+.. -.....+++.
T Consensus 108 ~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~----------~~~~~~~ell 177 (220)
T 1zye_A 108 INTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDL----------PVGRSVEETL 177 (220)
T ss_dssp HTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECT----------TCCCCHHHHH
T ss_pred HHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecCC----------CCCCCHHHHH
Confidence 8766 2 367888888888999999999 9999999999999999853221 0123456666
Q ss_pred HHhhhhhc
Q 008336 479 GQYNEMAK 486 (569)
Q Consensus 479 ~~l~~l~~ 486 (569)
+.|+++..
T Consensus 178 ~~l~~l~~ 185 (220)
T 1zye_A 178 RLVKAFQF 185 (220)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 66766653
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-17 Score=153.56 Aligned_cols=173 Identities=13% Similarity=0.095 Sum_probs=112.9
Q ss_pred CCCc-EEEEE----ecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 36 LKGK-IGLYF----SASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 36 ~~gk-vlv~F----~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
..+. +++.| |++||++|+.++|.+.++++++.+.+++.++.|+++.+. .++
T Consensus 19 ~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~------------------------~l~ 74 (229)
T 2ywm_A 19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHK------------------------EET 74 (229)
T ss_dssp CCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCH------------------------HHH
T ss_pred ccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccH------------------------HHH
Confidence 3455 55555 599999999999999999988854446999999988764 599
Q ss_pred HhcCCCCccEEEEECCCCc-EEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCce
Q 008336 111 ELFKVMGIPHLVILDENGK-VLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRK 189 (569)
Q Consensus 111 ~~~~v~~~P~~~lid~~G~-i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~ 189 (569)
+.|+|+++||+++++ +|. .....|. .+...+..++........ . ....+.+.
T Consensus 75 ~~~~v~~~Ptl~~~~-~~~~~~~~~G~------------~~~~~l~~~~~~~~~~~~--~------------~~~l~~~~ 127 (229)
T 2ywm_A 75 EKYGVDRVPTIVIEG-DKDYGIRYIGL------------PAGLEFTTLINGIFHVSQ--R------------KPQLSEKT 127 (229)
T ss_dssp HHTTCCBSSEEEEES-SSCCCEEEESC------------CCTTHHHHHHHHHHHHHT--T------------CCSCCHHH
T ss_pred HHcCCCcCcEEEEEC-CCcccceecCC------------ccHHHHHHHHHHHHhccC--C------------ccCCCHHH
Confidence 999999999999995 332 2222221 122333333322111000 0 00111111
Q ss_pred eee-ccccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHH
Q 008336 190 ISV-SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 268 (569)
Q Consensus 190 ~~~-~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~ 268 (569)
+.. ....++.+++.|+++||++|+.+.|.+.+++..+. .+.++.++++. ...
T Consensus 128 ~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~----~v~~~~vd~~~-----------------------~~~ 180 (229)
T 2ywm_A 128 LELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND----YITSKVIDASE-----------------------NQD 180 (229)
T ss_dssp HHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT----TEEEEEEEGGG-----------------------CHH
T ss_pred HHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC----CeEEEEEECCC-----------------------CHH
Confidence 111 11244566888999999999999999999888762 34444444433 357
Q ss_pred HHhhcccCCCceEEEECCCCC
Q 008336 269 LARYFELSTLPTLVIIGPDGK 289 (569)
Q Consensus 269 l~~~f~v~~~Ptlvi~~~~g~ 289 (569)
+++.|+|.++||+++ +|+
T Consensus 181 l~~~~~v~~~Pt~~~---~G~ 198 (229)
T 2ywm_A 181 LAEQFQVVGVPKIVI---NKG 198 (229)
T ss_dssp HHHHTTCCSSSEEEE---GGG
T ss_pred HHHHcCCcccCEEEE---CCE
Confidence 889999999999998 555
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=154.53 Aligned_cols=117 Identities=21% Similarity=0.373 Sum_probs=97.5
Q ss_pred cccee-cCCCCceecccCCCCEEEEEEecCCChh-HHhhhHHHHHHHHHHhhc-CCCeEEEEEeCCC---ChhHHHHHHh
Q 008336 339 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKER-NESLEVVFISSDR---DQTSFDEFFK 412 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~-~~~~~vv~is~d~---~~~~~~~~~~ 412 (569)
|+|.+ +.+|+.+++++++||++||+||++||++ |+.++|.|.+++++++++ ..++.|++|++|. +++.+++|++
T Consensus 22 p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~ 101 (200)
T 2b7k_A 22 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS 101 (200)
T ss_dssp CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred CCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHH
Confidence 89988 9999999999999999999999999998 999999999999999854 3469999999994 6788999998
Q ss_pred cCC--CcccccCchhhHHHHHhcCCC-Ccc---------------EEEEECCCCcEEEccc
Q 008336 413 GMP--WLALPFGDARKASLSRKFKVS-GIP---------------MLVAIGPSGRTITKEA 455 (569)
Q Consensus 413 ~~~--~~~~~~~~d~~~~l~~~~~v~-~~P---------------t~~lid~~G~i~~~~~ 455 (569)
+++ |..++...+....+++.|+|. +.| ++||||++|+|+....
T Consensus 102 ~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~ 162 (200)
T 2b7k_A 102 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALG 162 (200)
T ss_dssp TSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEEC
T ss_pred HcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeC
Confidence 875 444444456677899999987 444 8899999999998743
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=151.41 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=109.1
Q ss_pred CCc-ccee-cCCCCceecccCCCCEEEEEEecCCCh-hHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC--CChhHHHHHH
Q 008336 337 GDL-DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERNESLEVVFISSD--RDQTSFDEFF 411 (569)
Q Consensus 337 ~~~-~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d--~~~~~~~~~~ 411 (569)
..| +|.+ +.+|+++++++++||++||+||++||+ +|..+++.|++++++++....+++||+|++| ++++.+++|+
T Consensus 6 ~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~ 85 (170)
T 3me7_A 6 YVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQ 85 (170)
T ss_dssp BCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHH
T ss_pred cCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHH
Confidence 458 9988 999999999999999999999999998 6999999999999999754457999999998 4678899999
Q ss_pred hcCCC--ccccc----CchhhHHHHHhcCC---------CCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHH
Q 008336 412 KGMPW--LALPF----GDARKASLSRKFKV---------SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 476 (569)
Q Consensus 412 ~~~~~--~~~~~----~~d~~~~l~~~~~v---------~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~ 476 (569)
++++. ..+++ ..+....+++.||+ ...|++||||++|+|+... +|. ....++
T Consensus 86 ~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~-------~g~------~~~~~~ 152 (170)
T 3me7_A 86 KEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYI-------YGV------NYNYLE 152 (170)
T ss_dssp HHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEE-------ESS------SCCHHH
T ss_pred HHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEE-------eCC------CCCHHH
Confidence 88762 12211 22456788888774 4568999999999999873 231 112466
Q ss_pred HHHHhhhhhcCCC
Q 008336 477 IDGQYNEMAKGWP 489 (569)
Q Consensus 477 l~~~l~~l~~~~~ 489 (569)
+.+.|++++...+
T Consensus 153 i~~~l~~~~~~~~ 165 (170)
T 3me7_A 153 FVNALRLARGEGH 165 (170)
T ss_dssp HHHHHHHHTTCSC
T ss_pred HHHHHHHhhcccc
Confidence 7777777765443
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-17 Score=148.72 Aligned_cols=116 Identities=19% Similarity=0.348 Sum_probs=99.1
Q ss_pred cc-CCc-eecCCCceeecCCCCCc-EEEEEecCCCHh-hHhhHHHHHHHHHHhcCC---CCEEEEEEeCC---CCHHHHH
Q 008336 18 SA-RDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGP-CQRFTPILAEVYNELSRQ---GDFEVIFVSGD---EDDEAFK 87 (569)
Q Consensus 18 ~~-pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~-C~~~~p~l~~~~~~~~~~---g~~~vv~v~~d---~~~~~~~ 87 (569)
.. |+| +.+.+|+.+++++++|| +||+||++||++ |+.++|.|+++++++++. .++.|++|++| ++.+.++
T Consensus 4 ~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~ 83 (171)
T 2rli_A 4 TGQGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMA 83 (171)
T ss_dssp CCCSCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHH
T ss_pred CCCCCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHH
Confidence 45 899 56789999999999999 999999999998 999999999999999742 25999999998 3688999
Q ss_pred HHHHhCCCcccccCCc-hhHHHHHHhcCCCCcc---------------EEEEECCCCcEEEc
Q 008336 88 GYFSKMPWLAVPFSDS-ETRDKLDELFKVMGIP---------------HLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~v~~~P---------------~~~lid~~G~i~~~ 133 (569)
+|+++++..+..+.+. +....+.+.|++..+| +++|||++|+|+..
T Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 145 (171)
T 2rli_A 84 RYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY 145 (171)
T ss_dssp HHHHTTCTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEE
T ss_pred HHHHHcCCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEE
Confidence 9999998766555443 3345788999999888 99999999999874
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.4e-18 Score=152.00 Aligned_cols=115 Identities=17% Similarity=0.303 Sum_probs=102.0
Q ss_pred CCcccee---cCCC--Cceeccc-CCCCEEEEEEe-cCCChhHH-hhhHHHHHHHHHHhhcCCCeE-EEEEeCCCChhHH
Q 008336 337 GDLDFVV---GKNG--GKVPVSD-LAGKTILLYFS-AHWCPPCR-AFLPKLIDAYKKIKERNESLE-VVFISSDRDQTSF 407 (569)
Q Consensus 337 ~~~~f~~---~~~g--~~v~l~~-~~gk~vll~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~-vv~is~d~~~~~~ 407 (569)
..|+|.+ +.+| +++++++ ++||++||+|| ++||++|+ .++|.|++++++++++ ++. |++||.| +++..
T Consensus 9 ~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~--~v~~vv~Is~d-~~~~~ 85 (162)
T 1tp9_A 9 VLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK--GVTEILCISVN-DPFVM 85 (162)
T ss_dssp BCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT--TCCCEEEEESS-CHHHH
T ss_pred CCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEECC-CHHHH
Confidence 4588875 7899 9999999 89999999999 89999999 9999999999999875 699 9999998 56788
Q ss_pred HHHHhcCCCc-ccccCchhhHHHHHhcCCC------C-----ccEEEEECCCCcEEEccc
Q 008336 408 DEFFKGMPWL-ALPFGDARKASLSRKFKVS------G-----IPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 408 ~~~~~~~~~~-~~~~~~d~~~~l~~~~~v~------~-----~Pt~~lid~~G~i~~~~~ 455 (569)
++|.++++.- .+|++.|.+..+++.||+. + +|++|||| +|+|++...
T Consensus 86 ~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~ 144 (162)
T 1tp9_A 86 KAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANI 144 (162)
T ss_dssp HHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEE
T ss_pred HHHHHhcCCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEe
Confidence 9999988733 6899999999999999987 3 89999999 999999853
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=149.60 Aligned_cols=116 Identities=21% Similarity=0.379 Sum_probs=99.7
Q ss_pred ccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHh-hHhhHHHHHHHHHHhcCC---CCEEEEEEeCCC---CHHHHHH
Q 008336 18 SARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGP-CQRFTPILAEVYNELSRQ---GDFEVIFVSGDE---DDEAFKG 88 (569)
Q Consensus 18 ~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~-C~~~~p~l~~~~~~~~~~---g~~~vv~v~~d~---~~~~~~~ 88 (569)
.+|+| +.+.+|+.+++++++|| +||+||++||++ |+.++|.|+++++++++. .++.+++|++|. +.+.+++
T Consensus 2 ~ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~ 81 (164)
T 2ggt_A 2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIAN 81 (164)
T ss_dssp CCCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHH
T ss_pred CCCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHH
Confidence 58999 56789999999999999 999999999997 999999999999999762 259999999985 4788999
Q ss_pred HHHhCCCcccccCC-chhHHHHHHhcCCCCcc---------------EEEEECCCCcEEEc
Q 008336 89 YFSKMPWLAVPFSD-SETRDKLDELFKVMGIP---------------HLVILDENGKVLSD 133 (569)
Q Consensus 89 ~~~~~~~~~~~~~~-~~~~~~l~~~~~v~~~P---------------~~~lid~~G~i~~~ 133 (569)
|+++++..+..+.. .+....+.+.|++.++| +++|||++|+++..
T Consensus 82 ~~~~~~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 142 (164)
T 2ggt_A 82 YVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY 142 (164)
T ss_dssp HHHTTCSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEE
T ss_pred HHHHcCCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEE
Confidence 99998866554432 34445789999999999 89999999999874
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=151.27 Aligned_cols=124 Identities=22% Similarity=0.335 Sum_probs=96.3
Q ss_pred cccccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCH-hhHhhHHHHHHHHHHhcCCC-CEEEEEEeCC---CC
Q 008336 10 DIQSLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG-DFEVIFVSGD---ED 82 (569)
Q Consensus 10 ~~~~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~-~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d---~~ 82 (569)
.+..-+|.++|+| +.+.+|+++++++++|| +||+||++||+ +|...++.|.++++.+++.+ ++.+|+|++| ++
T Consensus 3 a~~~P~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dt 82 (170)
T 4hde_A 3 ALRKPLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDK 82 (170)
T ss_dssp CCCSCCCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCC
T ss_pred ccccCCCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCccccc
Confidence 4455689999999 66889999999999999 99999999997 89999999999999997665 7999999998 46
Q ss_pred HHHHHHHHHhCCCcccc---cCC--chhHHH-HHHhcC----------CCCccEEEEECCCCcEEEc
Q 008336 83 DEAFKGYFSKMPWLAVP---FSD--SETRDK-LDELFK----------VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 83 ~~~~~~~~~~~~~~~~~---~~~--~~~~~~-l~~~~~----------v~~~P~~~lid~~G~i~~~ 133 (569)
++.+++|+++++..... +.. ...... ....|+ +...|+++|||++|+|+..
T Consensus 83 p~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~ 149 (170)
T 4hde_A 83 PENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKK 149 (170)
T ss_dssp HHHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEE
T ss_pred HHHHHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEE
Confidence 78899999987643322 222 111111 222333 3446899999999999863
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-18 Score=154.43 Aligned_cols=114 Identities=15% Similarity=0.129 Sum_probs=100.0
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
..|+|.+ +.+|+.+++++++||++||+|| ++||++|+.++|.|+++++++ . +++|++|+.| +++.+++|++++
T Consensus 22 ~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~---~v~vv~Is~d-~~~~~~~~~~~~ 96 (165)
T 1q98_A 22 IVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-S---NTIVLCISAD-LPFAQARFCGAE 96 (165)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-T---TEEEEEEESS-CHHHHTTCTTTT
T ss_pred CCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-C---CCEEEEEeCC-CHHHHHHHHHHc
Confidence 4589988 9999999999999999999999 899999999999999999998 3 5999999997 456778888887
Q ss_pred CCcccccCchh-hHHHHHhcCCCC---------ccEEEEECCCCcEEEccc
Q 008336 415 PWLALPFGDAR-KASLSRKFKVSG---------IPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 415 ~~~~~~~~~d~-~~~l~~~~~v~~---------~Pt~~lid~~G~i~~~~~ 455 (569)
+.-.+|++.|. ...+++.|++.. +|++||||++|+|+++..
T Consensus 97 ~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~ 147 (165)
T 1q98_A 97 GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQL 147 (165)
T ss_dssp TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred CCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEe
Confidence 73268888886 788999999863 599999999999999864
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=160.79 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=102.6
Q ss_pred ccCCcccee----cCCCCceecccCCCCEEEEEEec-CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHH
Q 008336 335 VSGDLDFVV----GKNGGKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 409 (569)
Q Consensus 335 ~~~~~~f~~----~~~g~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~ 409 (569)
....|+|.+ +.+|++++|++++||++||+||+ +||++|+.++|.|.+++++|+++ ++.||+|++|. ....++
T Consensus 51 G~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~--gv~vv~Is~D~-~~~~~~ 127 (240)
T 3qpm_A 51 SKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAI--NTEVVACSVDS-QFTHLA 127 (240)
T ss_dssp TSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTT--TEEEEEEESSC-HHHHHH
T ss_pred CCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEECCC-HHHHHH
Confidence 345689985 44567999999999999999998 99999999999999999999875 79999999985 467778
Q ss_pred HHhcC------CCcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccc
Q 008336 410 FFKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 410 ~~~~~------~~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~ 455 (569)
|++.+ ..+.||++.|....+++.|++. .+|++||||++|+|+++..
T Consensus 128 ~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~ 185 (240)
T 3qpm_A 128 WIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITM 185 (240)
T ss_dssp HHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEe
Confidence 88765 2478899999999999999998 6899999999999999853
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=151.14 Aligned_cols=114 Identities=20% Similarity=0.298 Sum_probs=97.6
Q ss_pred cccCccCCc-eecC--CCceeecCCC-CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHH
Q 008336 14 LLSSSARDF-LIRS--NGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 88 (569)
Q Consensus 14 ~~g~~~pdf-~~~~--~g~~v~l~~~-~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~ 88 (569)
.+|.++|+| +.+. +|+.++++++ +|| +||+||++||++|+.++|.|.+++++ ++.+++|+++.+.+.+++
T Consensus 23 ~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~v~~~~~~~~~~~ 97 (168)
T 2b1k_A 23 LIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAIS 97 (168)
T ss_dssp TTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHH
T ss_pred ccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-----CCEEEEEECCCChHHHHH
Confidence 679999999 5567 8999999985 899 99999999999999999999998875 388999999999999999
Q ss_pred HHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 89 YFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
|+++++..+..+.. +....+++.|++.++|+++++|++|+++..
T Consensus 98 ~~~~~~~~~~~~~~-d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 141 (168)
T 2b1k_A 98 WLKELGNPYALSLF-DGDGMLGLDLGVYGAPETFLIDGNGIIRYR 141 (168)
T ss_dssp HHHHHCCCCSEEEE-ETTCHHHHHHTCCSSSEEEEECTTSBEEEE
T ss_pred HHHHcCCCCceeeE-CcchHHHHHcCccccCEEEEECCCCeEEEE
Confidence 99998876553221 223468899999999999999999999864
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=149.79 Aligned_cols=116 Identities=18% Similarity=0.367 Sum_probs=96.8
Q ss_pred ccccCccCCc-eecCCC--------ceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 008336 13 SLLSSSARDF-LIRSNG--------DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g--------~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~ 82 (569)
..+|.++|+| +.+.+| +.+++++++|| ++|+||++||++|+.++|.|.+++++ +++.+++|+++.+
T Consensus 8 ~~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~----~~v~~v~v~~~~~ 83 (156)
T 1kng_A 8 ALIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD----KRFQLVGINYKDA 83 (156)
T ss_dssp ----CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC----TTSEEEEEEESCC
T ss_pred HHhCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc----CCeEEEEEECCCC
Confidence 3679999999 556788 99999999999 99999999999999999999998765 3599999999999
Q ss_pred HHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
.+.+++|++++++.+..+.. +....+++.|++.++|+++++|++|+++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~v~~~P~~~~id~~G~i~~~ 133 (156)
T 1kng_A 84 ADNARRFLGRYGNPFGRVGV-DANGRASIEWGVYGVPETFVVGREGTIVYK 133 (156)
T ss_dssp HHHHHHHHHHHCCCCSEEEE-ETTSHHHHHTTCCSSCEEEEECTTSBEEEE
T ss_pred HHHHHHHHHHcCCCCceeee-CchhHHHHhcCcCccCeEEEEcCCCCEEEE
Confidence 99999999998876652221 222478899999999999999999999863
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=153.85 Aligned_cols=115 Identities=13% Similarity=0.138 Sum_probs=90.8
Q ss_pred cCCcccee-cCC-CCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhH
Q 008336 336 SGDLDFVV-GKN-GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTS 406 (569)
Q Consensus 336 ~~~~~f~~-~~~-g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~ 406 (569)
...|+|.+ +.+ |+.++|++++||+|||+|||+||++| .++|.|++++++|+++ ++.||+|++|. +.+.
T Consensus 15 ~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~--g~~vlgvs~d~f~~~e~~~~~~ 91 (207)
T 2r37_A 15 GTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPF--GLVILGFPCNQFGKQEPGENSE 91 (207)
T ss_dssp CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGG--TEEEEEEECCCBTTCCCSCHHH
T ss_pred CccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccC--CEEEEEEECcccCcCCCCCHHH
Confidence 34689988 999 99999999999999999999999999 7999999999999876 79999999762 4567
Q ss_pred HHHHHh------cCCCcccccCchh--h----HH----HHHhc-------C--------------CCCccEEEEECCCCc
Q 008336 407 FDEFFK------GMPWLALPFGDAR--K----AS----LSRKF-------K--------------VSGIPMLVAIGPSGR 449 (569)
Q Consensus 407 ~~~~~~------~~~~~~~~~~~d~--~----~~----l~~~~-------~--------------v~~~Pt~~lid~~G~ 449 (569)
+++|++ +++ +.||++.+. + .. +.... + |...|++||||++|+
T Consensus 92 i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~ 170 (207)
T 2r37_A 92 ILPTLKYVRPGGGFV-PNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGI 170 (207)
T ss_dssp HHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSC
T ss_pred HHHHHHhcchhhccC-ccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCc
Confidence 888998 666 677766431 1 11 11111 1 233489999999999
Q ss_pred EEEcc
Q 008336 450 TITKE 454 (569)
Q Consensus 450 i~~~~ 454 (569)
|+.+.
T Consensus 171 i~~~~ 175 (207)
T 2r37_A 171 PIMRW 175 (207)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99984
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-17 Score=153.25 Aligned_cols=118 Identities=11% Similarity=0.102 Sum_probs=90.0
Q ss_pred cccCccCCc-eecCC-CceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCH
Q 008336 14 LLSSSARDF-LIRSN-GDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDD 83 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~-g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~ 83 (569)
....++|+| +.+.+ |+.++|++++|| |||+|||+|||+| .++|.|++++++|+++| ++|++|++| .+.
T Consensus 12 ~~~~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g-~~vlgvs~d~f~~~e~~~~ 89 (207)
T 2r37_A 12 GISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFG-LVILGFPCNQFGKQEPGEN 89 (207)
T ss_dssp ---CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGT-EEEEEEECCCBTTCCCSCH
T ss_pred cccCccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCC-EEEEEEECcccCcCCCCCH
Confidence 345789999 56788 999999999999 9999999999999 79999999999999876 999999976 356
Q ss_pred HHHHHHHH------hCCCcccccCCch--h--HH----HHHHh-------cC--------------CCCccEEEEECCCC
Q 008336 84 EAFKGYFS------KMPWLAVPFSDSE--T--RD----KLDEL-------FK--------------VMGIPHLVILDENG 128 (569)
Q Consensus 84 ~~~~~~~~------~~~~~~~~~~~~~--~--~~----~l~~~-------~~--------------v~~~P~~~lid~~G 128 (569)
+.+++|++ +++..+..+.+.+ . .. .+... ++ |...|++||||++|
T Consensus 90 ~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G 169 (207)
T 2r37_A 90 SEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDG 169 (207)
T ss_dssp HHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTS
T ss_pred HHHHHHHHhcchhhccCccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCC
Confidence 78899998 7777655544321 1 01 12111 11 23348999999999
Q ss_pred cEEEc
Q 008336 129 KVLSD 133 (569)
Q Consensus 129 ~i~~~ 133 (569)
+|+.+
T Consensus 170 ~i~~~ 174 (207)
T 2r37_A 170 IPIMR 174 (207)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 99875
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=151.24 Aligned_cols=115 Identities=12% Similarity=0.117 Sum_probs=99.2
Q ss_pred cccCccCCc-ee-cCCCceeecCCC-CCc-EEEEEe-cCCCHhhHh-hHHHHHHHHHHhcCCCCE-EEEEEeCCCCHHHH
Q 008336 14 LLSSSARDF-LI-RSNGDQVKLDSL-KGK-IGLYFS-ASWCGPCQR-FTPILAEVYNELSRQGDF-EVIFVSGDEDDEAF 86 (569)
Q Consensus 14 ~~g~~~pdf-~~-~~~g~~v~l~~~-~gk-vlv~F~-a~wC~~C~~-~~p~l~~~~~~~~~~g~~-~vv~v~~d~~~~~~ 86 (569)
.+|+++|+| +. +.+|+.++|+++ +|| ++|+|| ++|||+|+. ++|.|++++++|++++ + +|++|+.| +.+..
T Consensus 4 ~~G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g-v~~vv~Is~d-~~~~~ 81 (167)
T 2wfc_A 4 KEGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKG-VDIIACMAVN-DSFVM 81 (167)
T ss_dssp CTTCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTT-CCEEEEEESS-CHHHH
T ss_pred CCCCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCC-CHHHH
Confidence 469999999 55 789999999998 999 888875 999999999 9999999999998875 9 99999998 57788
Q ss_pred HHHHHhCCCc--ccccCCchhHHHHHHhcCCCCc-----------cEEEEECCCCcEEEc
Q 008336 87 KGYFSKMPWL--AVPFSDSETRDKLDELFKVMGI-----------PHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~~~~--~~~~~~~~~~~~l~~~~~v~~~-----------P~~~lid~~G~i~~~ 133 (569)
++|+++.+.. +..+.|.+ ..+.+.||+... |+++|| ++|+|+..
T Consensus 82 ~~~~~~~~~~~~fp~l~D~~--~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~ 138 (167)
T 2wfc_A 82 DAWGKAHGADDKVQMLADPG--GAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKV 138 (167)
T ss_dssp HHHHHHTTCTTTSEEEECTT--SHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEE
T ss_pred HHHHHhcCCCcceEEEECCC--CcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEE
Confidence 9999999876 55555544 478999998754 999999 99999975
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=151.42 Aligned_cols=114 Identities=21% Similarity=0.213 Sum_probs=98.5
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|.++|+| +.+.+|+.+++++++|| ++|+|| ++||++|+.++|.|++++++ . ++.|++|+.| +.+.+++|+
T Consensus 21 ~~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~-~~~vv~is~d-~~~~~~~~~ 95 (166)
T 3p7x_A 21 NEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---E-EGIVLTISAD-LPFAQKRWC 95 (166)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---T-TSEEEEEESS-CHHHHHHHH
T ss_pred CCCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---C-CCEEEEEECC-CHHHHHHHH
Confidence 479999999 66789999999999999 999999 78999999999999999877 3 4999999988 678899999
Q ss_pred HhCCC-cccccCCchhHHHHHHhcCCCC------ccEEEEECCCCcEEEc
Q 008336 91 SKMPW-LAVPFSDSETRDKLDELFKVMG------IPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~-~~~~~~~~~~~~~l~~~~~v~~------~P~~~lid~~G~i~~~ 133 (569)
++++. .+..+.|.. ...+.+.|++.. +|+++|||++|+|+..
T Consensus 96 ~~~~~~~~~~l~D~~-~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~ 144 (166)
T 3p7x_A 96 ASAGLDNVITLSDHR-DLSFGENYGVVMEELRLLARAVFVLDADNKVVYK 144 (166)
T ss_dssp HHHTCSSCEEEECTT-TCHHHHHHTCEETTTTEECCEEEEECTTCBEEEE
T ss_pred HHcCCCceEEccCCc-hhHHHHHhCCccccCCceeeEEEEECCCCeEEEE
Confidence 99888 555555551 237899999985 8999999999999875
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.3e-18 Score=152.74 Aligned_cols=116 Identities=25% Similarity=0.433 Sum_probs=98.3
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChh-HHhhhHHHHHHHHHHhhcC-CCeEEEEEeCCC---ChhHHHHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERN-ESLEVVFISSDR---DQTSFDEF 410 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~-~~~~vv~is~d~---~~~~~~~~ 410 (569)
..|+|.+ +.+| .+++++++||++||+||++||++ |+.++|.|.+++++++++. +++.|++|++|. +++.+++|
T Consensus 15 ~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~ 93 (172)
T 2k6v_A 15 KPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRY 93 (172)
T ss_dssp EECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHH
T ss_pred CCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHH
Confidence 3588988 9999 99999999999999999999997 9999999999999987531 259999999984 46788999
Q ss_pred HhcCCCcccccCchhh---HHHHHhcCC---------------CCccEEEEECCCCcEEEccc
Q 008336 411 FKGMPWLALPFGDARK---ASLSRKFKV---------------SGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 411 ~~~~~~~~~~~~~d~~---~~l~~~~~v---------------~~~Pt~~lid~~G~i~~~~~ 455 (569)
+++++ +.++++.|.. ..+++.|++ .++|+++||| +|+|+.+..
T Consensus 94 ~~~~~-~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~ 154 (172)
T 2k6v_A 94 AKAFH-PSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYS 154 (172)
T ss_dssp HHHHC-TTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEEC
T ss_pred HHHhC-CCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEEC
Confidence 99887 5677776655 577777764 5789999999 999999854
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=148.22 Aligned_cols=113 Identities=20% Similarity=0.314 Sum_probs=99.8
Q ss_pred cCCcccee-cCCC--------CceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhH
Q 008336 336 SGDLDFVV-GKNG--------GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTS 406 (569)
Q Consensus 336 ~~~~~f~~-~~~g--------~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~ 406 (569)
...|+|.+ +.+| +.+++++++||+++|+||++||++|+.++|.|++++++ . ++.+++|++|.+.+.
T Consensus 12 ~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~---~v~~v~v~~~~~~~~ 86 (156)
T 1kng_A 12 RPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD--K---RFQLVGINYKDAADN 86 (156)
T ss_dssp CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC--T---TSEEEEEEESCCHHH
T ss_pred CCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc--C---CeEEEEEECCCCHHH
Confidence 34588987 8888 99999999999999999999999999999999888765 2 499999999999999
Q ss_pred HHHHHhcCCCcccc-cCchhhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 407 FDEFFKGMPWLALP-FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 407 ~~~~~~~~~~~~~~-~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+++|+++++ +.+| +..+....+++.|++.++|++++||++|+++.+.
T Consensus 87 ~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 134 (156)
T 1kng_A 87 ARRFLGRYG-NPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKL 134 (156)
T ss_dssp HHHHHHHHC-CCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEE
T ss_pred HHHHHHHcC-CCCceeeeCchhHHHHhcCcCccCeEEEEcCCCCEEEEE
Confidence 999999887 4566 5667778899999999999999999999999874
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=167.36 Aligned_cols=118 Identities=20% Similarity=0.185 Sum_probs=104.3
Q ss_pred ccccCccCCce-----e-cCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-----
Q 008336 13 SLLSSSARDFL-----I-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD----- 80 (569)
Q Consensus 13 ~~~g~~~pdf~-----~-~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d----- 80 (569)
..+|.++|+|. + +.+|+.+++++++|| +||+||++||++|+.++|.|.+++++|++++ +.|++|++|
T Consensus 51 l~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~-v~vi~Vs~d~~~~~ 129 (352)
T 2hyx_A 51 LESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG-LAVIGVHTPEYAFE 129 (352)
T ss_dssp CCCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT-EEEEEEECCSSGGG
T ss_pred cCCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCC-eEEEEEECCccccc
Confidence 35799999997 5 468999999999999 9999999999999999999999999998764 999999986
Q ss_pred CCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
++.+.+++|++++++.+..+.+.. ..+.+.|+|.++|+++|||++|+|+..
T Consensus 130 d~~~~~~~~~~~~~l~fpv~~D~~--~~l~~~ygV~~~Pt~~lID~~G~Iv~~ 180 (352)
T 2hyx_A 130 KVPGNVAKGAANLGISYPIALDNN--YATWTNYRNRYWPAEYLIDATGTVRHI 180 (352)
T ss_dssp GCHHHHHHHHHHHTCCSCEEECTT--SHHHHHTTCCEESEEEEECTTSBEEEE
T ss_pred CCHHHHHHHHHHcCCCccEEeCCc--HHHHHHcCCCccCEEEEEeCCCeEEEE
Confidence 478899999999987766555544 368899999999999999999999874
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-18 Score=157.43 Aligned_cols=114 Identities=21% Similarity=0.186 Sum_probs=101.3
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
..|+|.+ +.+|+.++|++++||++||+|| ++||++|+.++|.|+++++++ . +++|++|+.| +++.+++|++++
T Consensus 57 ~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~---~v~vv~Is~D-~~~~~~~~~~~~ 131 (200)
T 3zrd_A 57 KAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-E---NTVVLCISSD-LPFAQSRFCGAE 131 (200)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-T---TEEEEEEESS-CHHHHTTCTTTT
T ss_pred CCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-C---CCEEEEEECC-CHHHHHHHHHHc
Confidence 4589988 9999999999999999999999 789999999999999999999 2 5999999998 557788888888
Q ss_pred CCcccccCchh-hHHHHHhcCCC---------CccEEEEECCCCcEEEccc
Q 008336 415 PWLALPFGDAR-KASLSRKFKVS---------GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 415 ~~~~~~~~~d~-~~~l~~~~~v~---------~~Pt~~lid~~G~i~~~~~ 455 (569)
+.-.+|++.|. ...+++.|++. .+|++||||++|+|+++..
T Consensus 132 ~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~ 182 (200)
T 3zrd_A 132 GLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSEL 182 (200)
T ss_dssp TCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred CCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEe
Confidence 73388998888 88999999986 3699999999999999864
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-19 Score=160.21 Aligned_cols=117 Identities=28% Similarity=0.473 Sum_probs=102.1
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHH-HHHHhc-CCCCEEEEEEeCCCCHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAE-VYNELS-RQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~-~~~~~~-~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
.+|.++|+| +.+.+|+.+++++++|| ++|+||++||++|+.++|.|.+ +++++. .. ++.+++|++|.+.+.+++|
T Consensus 8 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~-~~~vv~v~~d~~~~~~~~~ 86 (159)
T 2ls5_A 8 RIGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNA-DFALIGIDRDEPLEKVLAF 86 (159)
Confidence 479999999 55789999999999999 9999999999999999999998 988887 44 5999999999888889999
Q ss_pred HHhCCCcccccCCchhHHHHHHhcC--CCCccEEEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFK--VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~--v~~~P~~~lid~~G~i~~~ 133 (569)
.+++++.+..+.+.. ..+.+.|+ +.++|+++|+|++|+++..
T Consensus 87 ~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~P~~~lid~~G~i~~~ 130 (159)
T 2ls5_A 87 AKSTGVTYPLGLDPG--ADIFAKYALRDAGITRNVLIDREGKIVKL 130 (159)
Confidence 999888666666544 46889999 5669999999999999875
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.72 E-value=9e-18 Score=151.95 Aligned_cols=115 Identities=19% Similarity=0.173 Sum_probs=98.5
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|.++|+| +.+.+|+.+++++++|| ++|+|| ++||++|+.++|.|+++++++ . +++|++|+.| +.+.+++|+
T Consensus 18 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~-~v~vv~Is~d-~~~~~~~~~ 93 (165)
T 1q98_A 18 QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--S-NTIVLCISAD-LPFAQARFC 93 (165)
T ss_dssp CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--T-TEEEEEEESS-CHHHHTTCT
T ss_pred CCCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--C-CCEEEEEeCC-CHHHHHHHH
Confidence 579999999 56789999999999999 999999 899999999999999999999 4 4999999997 567788899
Q ss_pred HhCCC-cccccCCchhHHHHHHhcCCCC---------ccEEEEECCCCcEEEc
Q 008336 91 SKMPW-LAVPFSDSETRDKLDELFKVMG---------IPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~-~~~~~~~~~~~~~l~~~~~v~~---------~P~~~lid~~G~i~~~ 133 (569)
+++++ .+..+.|.. ...+.+.|++.. .|+++|||++|+|+..
T Consensus 94 ~~~~~~~~~~l~D~~-~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~ 145 (165)
T 1q98_A 94 GAEGIENAKTVSTFR-NHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHS 145 (165)
T ss_dssp TTTTCTTEEEEECTT-CTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred HHcCCCceEEeeccc-cchHHHHhCceecccccCCccceeEEEEcCCCEEEEE
Confidence 88887 455555541 246889999853 5999999999999875
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-19 Score=156.90 Aligned_cols=122 Identities=35% Similarity=0.660 Sum_probs=101.8
Q ss_pred ccCCc-eecCCCceeecCC-CCCc--EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHh
Q 008336 18 SARDF-LIRSNGDQVKLDS-LKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSK 92 (569)
Q Consensus 18 ~~pdf-~~~~~g~~v~l~~-~~gk--vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~ 92 (569)
.+|+| +.+.+|+.+++++ ++|| ++|+||++||++|+.++|.|.++++++++.+ ++.+++|++|.+.+.+++|+++
T Consensus 3 ~~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~ 82 (143)
T 2lus_A 3 FIQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMME 82 (143)
Confidence 57899 5578999999999 9998 8999999999999999999999999996432 5999999999888899999998
Q ss_pred CCCcccccCC-chhHHHHHHhcCCCCccEEEEECCCCcEEEcCCccee
Q 008336 93 MPWLAVPFSD-SETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEII 139 (569)
Q Consensus 93 ~~~~~~~~~~-~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~ 139 (569)
++..+..+.. .+....+++.|++.++|+++++|++|+++.+.+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~ 130 (143)
T 2lus_A 83 SHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEV 130 (143)
Confidence 8755443322 2223468899999999999999999999987665544
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-17 Score=156.19 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=98.6
Q ss_pred cccCccCCcee-c---CCCceeecCCCCCc-EEEEEec-CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 14 LLSSSARDFLI-R---SNGDQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 14 ~~g~~~pdf~~-~---~~g~~v~l~~~~gk-vlv~F~a-~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
.+|.++|+|.+ + .+|+.++|++++|| +||+||+ +||++|+.++|.|.+++++|++.+ +.|++|++| +.+..+
T Consensus 49 ~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~g-v~vv~Is~D-~~~~~~ 126 (240)
T 3qpm_A 49 KISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAIN-TEVVACSVD-SQFTHL 126 (240)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEEESS-CHHHHH
T ss_pred CCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEECC-CHHHHH
Confidence 58999999953 2 34679999999999 9999999 999999999999999999999875 999999998 466778
Q ss_pred HHHHhC-------CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 88 GYFSKM-------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~-------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
+|+++. ++.+..+.|.+ ..+.+.|++. .+|++||||++|+|+..
T Consensus 127 ~~~~~~~~~~~~~~~~fp~l~D~~--~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~ 183 (240)
T 3qpm_A 127 AWIITPRKQGGLGPMKIPLLSDLT--HQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQI 183 (240)
T ss_dssp HHHHSCGGGTCCCSCSSCEEECTT--SHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHhhcCCCCCceeEEeCch--HHHHHHhCCccccCCCccceEEEEcCCCeEEEE
Confidence 888875 45555555544 4799999997 68999999999999875
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=149.04 Aligned_cols=115 Identities=15% Similarity=0.188 Sum_probs=101.1
Q ss_pred CCcccee--cCCCCceecccC-CCCEEEEEEe-cCCChhHHh-hhHHHHHHHHHHhhcCCCe-EEEEEeCCCChhHHHHH
Q 008336 337 GDLDFVV--GKNGGKVPVSDL-AGKTILLYFS-AHWCPPCRA-FLPKLIDAYKKIKERNESL-EVVFISSDRDQTSFDEF 410 (569)
Q Consensus 337 ~~~~f~~--~~~g~~v~l~~~-~gk~vll~F~-a~wC~~C~~-~~~~l~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~ 410 (569)
..|+|.+ +.+|++++|+++ +||++||+|| ++|||+|+. ++|.|++++++++++ ++ +|++||.| +++..++|
T Consensus 8 ~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~--gv~~vv~Is~d-~~~~~~~~ 84 (167)
T 2wfc_A 8 KLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGK--GVDIIACMAVN-DSFVMDAW 84 (167)
T ss_dssp BCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHT--TCCEEEEEESS-CHHHHHHH
T ss_pred cCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEeCC-CHHHHHHH
Confidence 4688876 789999999998 9999999986 999999999 999999999999876 69 99999998 56788899
Q ss_pred HhcCCCc-ccccCchhhHHHHHhcCCCCc-----------cEEEEECCCCcEEEccc
Q 008336 411 FKGMPWL-ALPFGDARKASLSRKFKVSGI-----------PMLVAIGPSGRTITKEA 455 (569)
Q Consensus 411 ~~~~~~~-~~~~~~d~~~~l~~~~~v~~~-----------Pt~~lid~~G~i~~~~~ 455 (569)
+++++.. .||++.|.+.++++.|++... |++||| ++|+|+++..
T Consensus 85 ~~~~~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~ 140 (167)
T 2wfc_A 85 GKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNV 140 (167)
T ss_dssp HHHTTCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEE
T ss_pred HHhcCCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEe
Confidence 9988732 399999999999999998754 999999 9999999854
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-17 Score=154.15 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=99.5
Q ss_pred ccccCccCCceec----CCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 13 SLLSSSARDFLIR----SNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 13 ~~~g~~~pdf~~~----~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
-.+|.++|+|.+. .+|+.+++++++|| +||+|| ++||++|+.++|.|.+++++|++.+ ++|++|++| +.+..
T Consensus 27 l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~-v~vv~Is~D-~~~~~ 104 (220)
T 1zye_A 27 PAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN-CEVVAVSVD-SHFSH 104 (220)
T ss_dssp CCTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT-EEEEEEESS-CHHHH
T ss_pred ccCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECC-CHHHH
Confidence 3679999999542 46899999999999 999999 9999999999999999999998775 999999999 46678
Q ss_pred HHHHHhC-------CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 87 KGYFSKM-------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
++|++++ ++.+..+.|.. ..+.+.|++. ++|+++|||++|+|+..
T Consensus 105 ~~~~~~~~~~~g~~~~~fp~l~D~~--~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~ 162 (220)
T 1zye_A 105 LAWINTPRKNGGLGHMNIALLSDLT--KQISRDYGVLLEGPGLALRGLFIIDPNGVIKHL 162 (220)
T ss_dssp HHHHTSCGGGTCCCSCSSEEEECTT--SHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHHHhCCCcCCceEEEECCc--HHHHHHhCCeecCCCcccceEEEECCCCEEEEE
Confidence 8888876 44444444533 4789999999 99999999999999875
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=150.09 Aligned_cols=113 Identities=23% Similarity=0.255 Sum_probs=97.9
Q ss_pred cCCcccee-cC--CCCceecccC-CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 336 SGDLDFVV-GK--NGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 336 ~~~~~f~~-~~--~g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
...|+|.+ +. +|+.+.++++ +||++||+||++||++|+.++|.|++++++ ++.|++|++|.+.+.+++|+
T Consensus 26 ~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~------~v~vv~v~~~~~~~~~~~~~ 99 (168)
T 2b1k_A 26 KPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWL 99 (168)
T ss_dssp SBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT------TCCEEEEEESCCHHHHHHHH
T ss_pred CcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC------CCEEEEEECCCChHHHHHHH
Confidence 44689988 77 8999999885 899999999999999999999999888765 38999999999989999999
Q ss_pred hcCCCcccc-cCchhhHHHHHhcCCCCccEEEEECCCCcEEEccc
Q 008336 412 KGMPWLALP-FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 412 ~~~~~~~~~-~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
++++ +.++ +..|....+++.|+|.++|++++||++|+++.+..
T Consensus 100 ~~~~-~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 143 (168)
T 2b1k_A 100 KELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA 143 (168)
T ss_dssp HHHC-CCCSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEEEE
T ss_pred HHcC-CCCceeeECcchHHHHHcCccccCEEEEECCCCeEEEEEe
Confidence 8877 3455 44567778999999999999999999999998743
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=149.33 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=99.5
Q ss_pred cccCccCCcee---cCCC--ceeecCC-CCCc-EEEEEe-cCCCHhhH-hhHHHHHHHHHHhcCCCCEE-EEEEeCCCCH
Q 008336 14 LLSSSARDFLI---RSNG--DQVKLDS-LKGK-IGLYFS-ASWCGPCQ-RFTPILAEVYNELSRQGDFE-VIFVSGDEDD 83 (569)
Q Consensus 14 ~~g~~~pdf~~---~~~g--~~v~l~~-~~gk-vlv~F~-a~wC~~C~-~~~p~l~~~~~~~~~~g~~~-vv~v~~d~~~ 83 (569)
.+|+++|+|.+ +.+| +.+++++ ++|| ++|+|| ++||++|+ .++|.|++++++|++++ ++ |++|+.| +.
T Consensus 5 ~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~-v~~vv~Is~d-~~ 82 (162)
T 1tp9_A 5 AVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG-VTEILCISVN-DP 82 (162)
T ss_dssp CTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT-CCCEEEEESS-CH
T ss_pred CCCCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECC-CH
Confidence 47999999954 6799 9999999 8999 999999 89999999 99999999999998775 99 9999998 57
Q ss_pred HHHHHHHHhCCC--cccccCCchhHHHHHHhcCCC------C-----ccEEEEECCCCcEEEc
Q 008336 84 EAFKGYFSKMPW--LAVPFSDSETRDKLDELFKVM------G-----IPHLVILDENGKVLSD 133 (569)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~------~-----~P~~~lid~~G~i~~~ 133 (569)
+..++|+++++. .+..+.|.+ ..+.+.||+. + .|+++||| +|+|+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~ 142 (162)
T 1tp9_A 83 FVMKAWAKSYPENKHVKFLADGS--ATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAA 142 (162)
T ss_dssp HHHHHHHHTCTTCSSEEEEECTT--SHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEE
T ss_pred HHHHHHHHhcCCCCCeEEEECCC--chHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEE
Confidence 889999999987 454455544 4789999986 3 79999999 9999875
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-15 Score=156.45 Aligned_cols=285 Identities=13% Similarity=0.175 Sum_probs=154.4
Q ss_pred cCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcC----CCCEEEEEEeCCCCHHHHHHHHHhCCCcccc
Q 008336 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSR----QGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP 99 (569)
Q Consensus 25 ~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~----~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 99 (569)
.++++.+...--.++ ++|+|||+||++|+++.|.+.++++.++. .+++.++.|+++...
T Consensus 9 ~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~---------------- 72 (382)
T 2r2j_A 9 SLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHS---------------- 72 (382)
T ss_dssp BCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCH----------------
T ss_pred ECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccH----------------
Confidence 344444432112478 99999999999999999999999999964 335999999998763
Q ss_pred cCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCC
Q 008336 100 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSR 179 (569)
Q Consensus 100 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (569)
.+++.|+|+++||++++ ++|+++.+ .+.. +.+.+.+.+++.... ...+..+..
T Consensus 73 --------~l~~~~~v~~~Pt~~~f-~~G~~~~~-------~~~G---~~~~~~l~~~i~~~~----~~~v~~l~~---- 125 (382)
T 2r2j_A 73 --------DIAQRYRISKYPTLKLF-RNGMMMKR-------EYRG---QRSVKALADYIRQQK----SDPIQEIRD---- 125 (382)
T ss_dssp --------HHHHHTTCCEESEEEEE-ETTEEEEE-------ECCS---CCSHHHHHHHHHHHH----SCCCEEC------
T ss_pred --------HHHHhcCCCcCCEEEEE-eCCcEeee-------eecC---cchHHHHHHHHHHhc----cCCceecCC----
Confidence 58999999999999998 67876531 1211 345666666654421 111111100
Q ss_pred ceeecCCCceeeeccccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccc
Q 008336 180 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLAL 259 (569)
Q Consensus 180 d~~~~~~~~~~~~~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~ 259 (569)
.+.+.... ..+.+++.|+..++. ...+.+.+++..++.. +.|.....+
T Consensus 126 -------~~~l~~l~-~~~~~~v~ff~~~~~---~~~~~f~~~A~~~~~~-----~~F~~~~~~---------------- 173 (382)
T 2r2j_A 126 -------LAEITTLD-RSKRNIIGYFEQKDS---DNYRVFERVANILHDD-----CAFLSAFGD---------------- 173 (382)
T ss_dssp ------------------CCEEEEEESCSSS---HHHHHHHHHHHHHTTT-----CEEEEEESC----------------
T ss_pred -------HHHHHHhc-CCCCEEEEEECCCCC---hhHHHHHHHHHHhhcc-----ceEEEEehh----------------
Confidence 00111111 223344445555432 3355677788888654 222211111
Q ss_pred cCCchhHHHHHhhcccCCCceEEEECCCCCchhhhhHHHHHhhCCCCCCC-ChHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 008336 260 PFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPF-TPEKFAELAEIQRAKEESQTLESVLVSGD 338 (569)
Q Consensus 260 ~~~d~~~~~l~~~f~v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 338 (569)
+++.+++++.| +++...+..... +.+.| .+ +.+.+..++..... +.+
T Consensus 174 ---------~~~~~~v~~~p-i~~~~~~~~~~~------~~y~g----~~~~~~~l~~fi~~~~~----p~v-------- 221 (382)
T 2r2j_A 174 ---------VSKPERYSGDN-IIYKPPGHSAPD------MVYLG----AMTNFDVTYNWIQDKCV----PLV-------- 221 (382)
T ss_dssp ---------C--------CE-EEEECSSSSSCC------EECCS----CTTCHHHHHHHHHHHHS----CSS--------
T ss_pred ---------hHHhhCCCCCc-eEECCCCCCCcC------cccCC----CCCCHHHHHHHHHhccc----Cce--------
Confidence 13456788889 555543111100 00001 23 56777777764331 100
Q ss_pred ccceecCCCCceecccCCCCEEEEEEecCCChh-HHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCc
Q 008336 339 LDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 417 (569)
Q Consensus 339 ~~f~~~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~ 417 (569)
+.+.- .+...+ +. .+++++|.|+.++|.. +..+...+.+++.++++ .+.++.++.+...
T Consensus 222 ~elt~-~~~~~~-~~--~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~---~i~f~~id~~~~~------------- 281 (382)
T 2r2j_A 222 REITF-ENGEEL-TE--EGLPFLILFHMKEDTESLEIFQNEVARQLISEKG---TINFLHADCDKFR------------- 281 (382)
T ss_dssp EECCH-HHHHHH-HT--TCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTT---TSEEEEEETTTTH-------------
T ss_pred EecCh-hhHHHH-hc--CCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCC---eeEEEEEchHHhH-------------
Confidence 00000 000011 11 2678889999988743 55555555555555543 4888888766443
Q ss_pred ccccCchhhHHHHHhcCCC--CccEEEEECC
Q 008336 418 ALPFGDARKASLSRKFKVS--GIPMLVAIGP 446 (569)
Q Consensus 418 ~~~~~~d~~~~l~~~~~v~--~~Pt~~lid~ 446 (569)
.+.+.||+. .+|.+++++.
T Consensus 282 ----------~~~~~~gl~~~~~P~i~i~~~ 302 (382)
T 2r2j_A 282 ----------HPLLHIQKTPADCPVIAIDSF 302 (382)
T ss_dssp ----------HHHHHTTCCGGGCSEEEEECS
T ss_pred ----------HHHHHcCCCccCCCEEEEEcc
Confidence 356788886 6899988865
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=152.37 Aligned_cols=116 Identities=13% Similarity=0.187 Sum_probs=97.5
Q ss_pred ccccCccCCc-eecC--CC-ceeecCC-CCCc-E-EEEEecCCCHhhHh-hHHHHHHHHHHhcCCCCEE-EEEEeCCCCH
Q 008336 13 SLLSSSARDF-LIRS--NG-DQVKLDS-LKGK-I-GLYFSASWCGPCQR-FTPILAEVYNELSRQGDFE-VIFVSGDEDD 83 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~--~g-~~v~l~~-~~gk-v-lv~F~a~wC~~C~~-~~p~l~~~~~~~~~~g~~~-vv~v~~d~~~ 83 (569)
-.+|.++|+| +.+. +| +.+++++ ++|| + |++||++|||+|+. ++|.|++++++|+++| +. |++|+.| +.
T Consensus 26 l~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g-v~~vv~Is~d-~~ 103 (184)
T 3uma_A 26 IAVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARG-VDDIAVVAVN-DL 103 (184)
T ss_dssp CCTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT-CCEEEEEESS-CH
T ss_pred CCCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcC-CCEEEEEECC-CH
Confidence 3679999999 4455 89 9999999 8999 5 55567999999999 7999999999999886 88 9999998 57
Q ss_pred HHHHHHHHhCCCc--ccccCCchhHHHHHHhcCCC-----------CccEEEEECCCCcEEEc
Q 008336 84 EAFKGYFSKMPWL--AVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 84 ~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~ 133 (569)
+..++|.++.+.. +..+.|.+ ..+++.||+. ..|++|||| +|+|++.
T Consensus 104 ~~~~~f~~~~~~~~~fp~l~D~~--~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~ 163 (184)
T 3uma_A 104 HVMGAWATHSGGMGKIHFLSDWN--AAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKAL 163 (184)
T ss_dssp HHHHHHHHHHTCTTTSEEEECTT--CHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEE
T ss_pred HHHHHHHHHhCCCCceEEEEcCc--hHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEE
Confidence 7889999998887 66666655 4799999985 358899996 9999874
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.6e-17 Score=149.98 Aligned_cols=123 Identities=20% Similarity=0.309 Sum_probs=96.6
Q ss_pred ccccccCcc--CCc-eecCCCceeecCCCCCc-EEEEEecCCCHh-hHhhHHHHHHHHHHhcCC--CCEEEEEEeCCC--
Q 008336 11 IQSLLSSSA--RDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGP-CQRFTPILAEVYNELSRQ--GDFEVIFVSGDE-- 81 (569)
Q Consensus 11 ~~~~~g~~~--pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~-C~~~~p~l~~~~~~~~~~--g~~~vv~v~~d~-- 81 (569)
....+|.++ |+| +.+.+|+.+++++++|| +||+||++||++ |+.++|.|.++++++.++ .++.|++|++|.
T Consensus 11 ~~~~~g~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~ 90 (200)
T 2b7k_A 11 ANRGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPAR 90 (200)
T ss_dssp -----CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTT
T ss_pred hHhccCCCCcCCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCC
Confidence 345678886 999 56789999999999999 999999999997 999999999999988753 259999999994
Q ss_pred -CHHHHHHHHHhCCCcccccCC-chhHHHHHHhcCCC-Ccc---------------EEEEECCCCcEEEc
Q 008336 82 -DDEAFKGYFSKMPWLAVPFSD-SETRDKLDELFKVM-GIP---------------HLVILDENGKVLSD 133 (569)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~v~-~~P---------------~~~lid~~G~i~~~ 133 (569)
+++.+++|+++++..+..+.. .+....+++.|++. +.| +++|||++|+|+..
T Consensus 91 d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~ 160 (200)
T 2b7k_A 91 DSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA 160 (200)
T ss_dssp CCHHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred CCHHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEE
Confidence 788999999998765544433 33345788899987 344 78999999999874
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=155.37 Aligned_cols=115 Identities=21% Similarity=0.269 Sum_probs=99.6
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|.++|+| +.+.+|+.++|++++|| ++|+|| ++||++|+.++|.|++++++| + +++|++|+.| +.+.+++|+
T Consensus 53 ~~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~-~v~vv~Is~D-~~~~~~~~~ 128 (200)
T 3zrd_A 53 QIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--E-NTVVLCISSD-LPFAQSRFC 128 (200)
T ss_dssp CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--T-TEEEEEEESS-CHHHHTTCT
T ss_pred CCCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--C-CCEEEEEECC-CHHHHHHHH
Confidence 469999999 66789999999999999 999999 789999999999999999999 4 4999999998 677888999
Q ss_pred HhCCC-cccccCCchhHHHHHHhcCCC---------CccEEEEECCCCcEEEc
Q 008336 91 SKMPW-LAVPFSDSETRDKLDELFKVM---------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~-~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~ 133 (569)
+++++ .+..+.|.. ...+.+.|++. ..|++||||++|+|+..
T Consensus 129 ~~~~~~~f~~l~D~~-~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~ 180 (200)
T 3zrd_A 129 GAEGLSNVITLSTLR-GADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYS 180 (200)
T ss_dssp TTTTCTTEEEEETTS-CTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred HHcCCCCceEEecCc-hHHHHHHhCceeecccCCCccccEEEEECCCCeEEEE
Confidence 99888 666666551 24788999986 36999999999999874
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=151.39 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=100.9
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHh-hHhhHHHHHHHHHHhcCCC--CEEEEEEeCCC---CHH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGP-CQRFTPILAEVYNELSRQG--DFEVIFVSGDE---DDE 84 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~-C~~~~p~l~~~~~~~~~~g--~~~vv~v~~d~---~~~ 84 (569)
.++|.++|+| +.+.+| .+++++++|| +||+||++||++ |+.++|.|.++++++++++ ++.|++|++|. +.+
T Consensus 10 ~~~G~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~ 88 (172)
T 2k6v_A 10 RLLNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPE 88 (172)
T ss_dssp EEEEEEECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHH
T ss_pred cccCCCCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHH
Confidence 4679999999 667899 9999999999 999999999997 9999999999999998652 59999999984 578
Q ss_pred HHHHHHHhCCCcccccCCchh-HHHHHHhcCC---------------CCccEEEEECCCCcEEEc
Q 008336 85 AFKGYFSKMPWLAVPFSDSET-RDKLDELFKV---------------MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~v---------------~~~P~~~lid~~G~i~~~ 133 (569)
.+++|+++++..+..+.+... ...+.+.|++ .++|+++||| +|+|+..
T Consensus 89 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~ 152 (172)
T 2k6v_A 89 VADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLL 152 (172)
T ss_dssp HHHHHHHHHCTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEE
T ss_pred HHHHHHHHhCCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEE
Confidence 899999999877766666542 2467777764 5789999999 9999874
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=152.77 Aligned_cols=134 Identities=13% Similarity=0.206 Sum_probs=106.6
Q ss_pred cCCcccee-cC--CC-Cceeccc-CCCCEE-EEEEecCCChhHHh-hhHHHHHHHHHHhhcCCCeE-EEEEeCCCChhHH
Q 008336 336 SGDLDFVV-GK--NG-GKVPVSD-LAGKTI-LLYFSAHWCPPCRA-FLPKLIDAYKKIKERNESLE-VVFISSDRDQTSF 407 (569)
Q Consensus 336 ~~~~~f~~-~~--~g-~~v~l~~-~~gk~v-ll~F~a~wC~~C~~-~~~~l~~l~~~~~~~~~~~~-vv~is~d~~~~~~ 407 (569)
...|+|.+ +. +| +++++++ ++||++ |++||++|||+|+. ++|.|++++++|+++ ++. |++||.| ++...
T Consensus 30 ~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~--gv~~vv~Is~d-~~~~~ 106 (184)
T 3uma_A 30 DKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILAR--GVDDIAVVAVN-DLHVM 106 (184)
T ss_dssp CBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT--TCCEEEEEESS-CHHHH
T ss_pred CCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHc--CCCEEEEEECC-CHHHH
Confidence 44689988 76 89 9999999 899965 55566999999999 799999999999876 688 9999998 45788
Q ss_pred HHHHhcCCCc-ccccCchhhHHHHHhcCCC-----------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHH
Q 008336 408 DEFFKGMPWL-ALPFGDARKASLSRKFKVS-----------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 475 (569)
Q Consensus 408 ~~~~~~~~~~-~~~~~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~ 475 (569)
++|.++++.. .||++.|.+..+++.||+. ..|++|||| +|+|++...+. ..-++.....+
T Consensus 107 ~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~-------~~g~~~~~~~~ 178 (184)
T 3uma_A 107 GAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEE-------SPGQATASGAA 178 (184)
T ss_dssp HHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECS-------STTCCSTTSHH
T ss_pred HHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeC-------CCCCCcCCCHH
Confidence 8999988743 4999999999999999986 358899996 99999986432 22234445555
Q ss_pred HHHHH
Q 008336 476 EIDGQ 480 (569)
Q Consensus 476 ~l~~~ 480 (569)
++.++
T Consensus 179 ~vL~~ 183 (184)
T 3uma_A 179 AMLEL 183 (184)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 55443
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=148.54 Aligned_cols=113 Identities=18% Similarity=0.142 Sum_probs=97.5
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|.++|+| +.+.+|+.+++++++|| ++|+|| ++||++|+.++|.|+++++++ . +++|++|+.| +.+..++|+
T Consensus 22 ~~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~-~v~vv~Is~d-~~~~~~~~~ 97 (171)
T 2yzh_A 22 KVGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--E-GVDVTVVSMD-LPFAQKRFC 97 (171)
T ss_dssp CTTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T-TEEEEEEESS-CHHHHHHHH
T ss_pred CCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--C-CceEEEEeCC-CHHHHHHHH
Confidence 469999999 56789999999999999 999999 899999999999999999998 4 4999999998 577889999
Q ss_pred HhCCC-cccccCC-chhHHHHHHhcCCCC---------ccEEEEECCCCcEEEc
Q 008336 91 SKMPW-LAVPFSD-SETRDKLDELFKVMG---------IPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~-~~~~~~~-~~~~~~l~~~~~v~~---------~P~~~lid~~G~i~~~ 133 (569)
++++. .+..+.| .. ..+ +.|++.. +|+++|||++|+|+..
T Consensus 98 ~~~~~~~~~~l~D~~~--~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~ 148 (171)
T 2yzh_A 98 ESFNIQNVTVASDFRY--RDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYV 148 (171)
T ss_dssp HHTTCCSSEEEECTTT--CGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred HHcCCCCeEEeecCcc--CcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEE
Confidence 99987 5555555 33 357 8999852 6999999999999875
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-17 Score=151.78 Aligned_cols=118 Identities=18% Similarity=0.189 Sum_probs=91.6
Q ss_pred cccCccCCc-eecCC-CceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCH
Q 008336 14 LLSSSARDF-LIRSN-GDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDD 83 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~-g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~ 83 (569)
..+.++|+| +.+.+ |+.++|++++|| |||+|||+|||+|+ ++|.|++++++|++++ ++|++|+++ .+.
T Consensus 30 ~~~~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g-~~Vlgvs~d~f~~~e~~~~ 107 (215)
T 2i3y_A 30 DEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYG-LVVLGFPCNQFGKQEPGDN 107 (215)
T ss_dssp CCCCCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGT-EEEEEEECCCSTTCCCSCH
T ss_pred cccCCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCC-eEEEEEEccccCcCCCCCH
Confidence 346789999 56788 999999999999 99999999999999 9999999999999876 999999976 256
Q ss_pred HHHHHHHH------hCCCcccccCCch--h--HHH----HHHh-------c--------------CCCCccEEEEECCCC
Q 008336 84 EAFKGYFS------KMPWLAVPFSDSE--T--RDK----LDEL-------F--------------KVMGIPHLVILDENG 128 (569)
Q Consensus 84 ~~~~~~~~------~~~~~~~~~~~~~--~--~~~----l~~~-------~--------------~v~~~P~~~lid~~G 128 (569)
+.+++|++ +++..+..+.+.+ . ... +... + .|...|++||||++|
T Consensus 108 ~~i~~f~~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G 187 (215)
T 2i3y_A 108 KEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDG 187 (215)
T ss_dssp HHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTS
T ss_pred HHHHHHHHhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCC
Confidence 78899998 7776655554321 1 011 2111 1 123348999999999
Q ss_pred cEEEc
Q 008336 129 KVLSD 133 (569)
Q Consensus 129 ~i~~~ 133 (569)
+|+.+
T Consensus 188 ~vv~~ 192 (215)
T 2i3y_A 188 IPVMR 192 (215)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 99874
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-17 Score=152.02 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=95.8
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCC-ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
..|+|.+ +.+|+.+++++++||++||+||++| |++|+.++|.|.+++++ . ++.||+|++|. ++..++|++++
T Consensus 23 ~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~---~v~vv~Is~D~-~~~~~~~~~~~ 96 (175)
T 1xvq_A 23 PAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA--S---GATVLCVSKDL-PFAQKRFCGAE 96 (175)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--T---TCEEEEEESSC-HHHHTTCC---
T ss_pred cCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--c---CCEEEEEECCC-HHHHHHHHHHc
Confidence 3589988 9999999999999999999999999 99999999999999988 2 59999999974 46677888877
Q ss_pred CCcccccCchhhHHHHHhcCCCCc---------cEEEEECCCCcEEEccc
Q 008336 415 PWLALPFGDARKASLSRKFKVSGI---------PMLVAIGPSGRTITKEA 455 (569)
Q Consensus 415 ~~~~~~~~~d~~~~l~~~~~v~~~---------Pt~~lid~~G~i~~~~~ 455 (569)
++..+|++.|....+++.|++... |+++|||++|+|+++..
T Consensus 97 ~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~ 146 (175)
T 1xvq_A 97 GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTEL 146 (175)
T ss_dssp ---CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEE
T ss_pred CCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEE
Confidence 744788888888889999999887 99999999999999853
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-17 Score=147.59 Aligned_cols=117 Identities=16% Similarity=0.264 Sum_probs=99.9
Q ss_pred cCCcccee--cCCCCceeccc-CCCCEEEEEE-ecCCChhHH-hhhHHHHHHHHHHhhcCCCeEEEE-EeCCCChhHHHH
Q 008336 336 SGDLDFVV--GKNGGKVPVSD-LAGKTILLYF-SAHWCPPCR-AFLPKLIDAYKKIKERNESLEVVF-ISSDRDQTSFDE 409 (569)
Q Consensus 336 ~~~~~f~~--~~~g~~v~l~~-~~gk~vll~F-~a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~vv~-is~d~~~~~~~~ 409 (569)
...|+|.+ +.+|+.++|++ ++||+++|+| |++|||+|+ .++|.|++++++|+++ ++.||+ ||.| +....++
T Consensus 19 ~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~--gv~vv~~iS~D-~~~~~~~ 95 (173)
T 3mng_A 19 DAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK--GVQVVACLSVN-DAFVTGE 95 (173)
T ss_dssp CBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT--TCCEEEEEESS-CHHHHHH
T ss_pred CCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEEcCC-CHHHHHH
Confidence 44689976 68999999999 6999766655 599999999 5999999999999876 799997 9998 4578889
Q ss_pred HHhcCCCc-ccccCchhhHHHHHhcCCC-------------CccEEEEECCCCcEEEccch
Q 008336 410 FFKGMPWL-ALPFGDARKASLSRKFKVS-------------GIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 410 ~~~~~~~~-~~~~~~d~~~~l~~~~~v~-------------~~Pt~~lid~~G~i~~~~~~ 456 (569)
|+++++.. .||++.|.+.++++.||+. ..|++|||| +|+|++....
T Consensus 96 f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~ 155 (173)
T 3mng_A 96 WGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVE 155 (173)
T ss_dssp HHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEEC
T ss_pred HHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEe
Confidence 99988843 4999999999999999986 359999999 9999998643
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=159.04 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=102.4
Q ss_pred ccCCcccee----cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHH
Q 008336 335 VSGDLDFVV----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 409 (569)
Q Consensus 335 ~~~~~~f~~----~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~ 409 (569)
....|+|.+ +.+|++++|++++||++||+|| ++||++|..++|.|.+++++|+++ +++||+|++|. .....+
T Consensus 65 G~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~--gv~vv~IS~D~-~~~~~~ 141 (254)
T 3tjj_A 65 SKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI--NTEVVACSVDS-QFTHLA 141 (254)
T ss_dssp TSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTT--TEEEEEEESSC-HHHHHH
T ss_pred CCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHc--CCEEEEEcCCC-HHHHHH
Confidence 345689974 4568899999999999999999 999999999999999999999875 79999999984 467778
Q ss_pred HHhcC------CCcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccc
Q 008336 410 FFKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 410 ~~~~~------~~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~ 455 (569)
|++.+ ..+.||++.|....+++.|++. .+|++||||++|+|+++..
T Consensus 142 ~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~ 199 (254)
T 3tjj_A 142 WINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITL 199 (254)
T ss_dssp HHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEe
Confidence 88765 1478899999889999999996 5899999999999999853
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-17 Score=148.93 Aligned_cols=115 Identities=15% Similarity=0.284 Sum_probs=96.2
Q ss_pred ccCccCCceecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-----CCHHHHHH
Q 008336 15 LSSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-----EDDEAFKG 88 (569)
Q Consensus 15 ~g~~~pdf~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-----~~~~~~~~ 88 (569)
+|.++| -+.+.+|+.+++++++|| +||+||++||++|+.++|.|.+++++++..+ +.|++|+++ .+.+.+++
T Consensus 16 ~~~~~p-~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~-~~vv~v~~~~~~~~~~~~~~~~ 93 (164)
T 2h30_A 16 VPHTMS-TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS-ANLITVASPGFLHEKKDGEFQK 93 (164)
T ss_dssp HHHHHT-TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTT-SEEEEEECTTSTTCCCTTHHHH
T ss_pred cCCcCC-ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC-cEEEEEEcCCCccccCHHHHHH
Confidence 455566 356789999999999999 9999999999999999999999999998775 999999985 35677889
Q ss_pred HHHhCCCccccc-CCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 89 YFSKMPWLAVPF-SDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 89 ~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
|+.++++...++ .+. ...+++.|++.++|+++|+|++|+++..
T Consensus 94 ~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~ 137 (164)
T 2h30_A 94 WYAGLNYPKLPVVTDN--GGTIAQNLNISVYPSWALIGKDGDVQRI 137 (164)
T ss_dssp HHTTSCCTTSCEEECT--TCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred HHHhCCCCcceEEEcC--chHHHHHcCCCccceEEEECCCCcEEEE
Confidence 988877763333 332 2478999999999999999999999864
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-17 Score=149.29 Aligned_cols=116 Identities=13% Similarity=0.268 Sum_probs=99.6
Q ss_pred cCCcccee-cC----CC-----CceecccC-CCC-EEEEEEecCCChhHHhh-hHHHHHHHHHHhhcCCCeE-EEEEeCC
Q 008336 336 SGDLDFVV-GK----NG-----GKVPVSDL-AGK-TILLYFSAHWCPPCRAF-LPKLIDAYKKIKERNESLE-VVFISSD 401 (569)
Q Consensus 336 ~~~~~f~~-~~----~g-----~~v~l~~~-~gk-~vll~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~-vv~is~d 401 (569)
...|+|.+ +. +| +.++++++ +|| +||++||++|||+|+.+ +|.|++++++++++ ++. |++||.|
T Consensus 11 ~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~--g~~~vv~Is~d 88 (171)
T 2pwj_A 11 SAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAK--GVDSVICVAIN 88 (171)
T ss_dssp CCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHT--TCSEEEEEESS
T ss_pred CcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEeCC
Confidence 35689987 65 47 89999996 996 67778999999999999 99999999999876 688 9999998
Q ss_pred CChhHHHHHHhcCCC-cccccCchhhHHHHHhcCCCC-----------ccEEEEECCCCcEEEccc
Q 008336 402 RDQTSFDEFFKGMPW-LALPFGDARKASLSRKFKVSG-----------IPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 402 ~~~~~~~~~~~~~~~-~~~~~~~d~~~~l~~~~~v~~-----------~Pt~~lid~~G~i~~~~~ 455 (569)
. ....++|+++++. +.||++.|.+..+++.||+.. .|+.+||| +|+|++.+.
T Consensus 89 ~-~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~ 152 (171)
T 2pwj_A 89 D-PYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNV 152 (171)
T ss_dssp C-HHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEE
T ss_pred C-HHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEe
Confidence 4 5688899999886 579999999999999999863 56888888 999999864
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-17 Score=155.09 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=110.5
Q ss_pred cCCcccee-cCCCCceecccCCCC-EEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHh
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGK-TILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 412 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 412 (569)
...|+|.+ +.+| ++++++++|| ++||+|| ++||++|..+++.|++++++|+++ +++||+||+|. ....++|++
T Consensus 7 ~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~--~v~vigIS~D~-~~~~~~~~~ 82 (233)
T 2v2g_A 7 EVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR--GVKLIALSCDN-VADHKEWSE 82 (233)
T ss_dssp CBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHT--TEEEEEEESSC-HHHHHHHHH
T ss_pred CCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHc--CCEEEEEcCCC-HHHHHHHHH
Confidence 45689988 8899 9999999998 9999998 999999999999999999999876 79999999995 456667776
Q ss_pred ------cCC-CcccccCchhhHHHHHhcCCC------------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHH
Q 008336 413 ------GMP-WLALPFGDARKASLSRKFKVS------------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEER 473 (569)
Q Consensus 413 ------~~~-~~~~~~~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~ 473 (569)
+.+ .+.||++.|....+++.|++. .+|++||||++|+|+....+.. ..+++
T Consensus 83 ~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~----------~~gr~ 152 (233)
T 2v2g_A 83 DVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPA----------TTGRN 152 (233)
T ss_dssp HHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECT----------TBCCC
T ss_pred HHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCC----------CCCCC
Confidence 452 478899999999999999985 5899999999999999853211 11234
Q ss_pred HHHHHHHhhhhh
Q 008336 474 MKEIDGQYNEMA 485 (569)
Q Consensus 474 ~~~l~~~l~~l~ 485 (569)
.+++.+.|+.+.
T Consensus 153 ~~eilr~l~~Lq 164 (233)
T 2v2g_A 153 FSEILRVIDSLQ 164 (233)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566777776654
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-17 Score=150.77 Aligned_cols=116 Identities=26% Similarity=0.280 Sum_probs=98.5
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCC-CHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASW-CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~w-C~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
-.+|.++|+| +.+.+|+.+++++++|| ++|+||++| |++|+.++|.|+++++++ . ++.+++|+.| +.+.+++|
T Consensus 18 ~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~-~~~vv~is~d-~~~~~~~~ 93 (167)
T 2jsy_A 18 VKVGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--G-DVNVYTISAD-LPFAQARW 93 (167)
T ss_dssp CCTTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--S-SCEEEEEECS-SGGGTSCC
T ss_pred cCCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--C-CCEEEEEECC-CHHHHHHH
Confidence 3579999999 56789999999999999 999999999 999999999999999999 3 4999999998 45667888
Q ss_pred HHhCCC-cccccCCchhHHHHHHhcCCCC------ccEEEEECCCCcEEEc
Q 008336 90 FSKMPW-LAVPFSDSETRDKLDELFKVMG------IPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~-~~~~~~~~~~~~~l~~~~~v~~------~P~~~lid~~G~i~~~ 133 (569)
++++++ .+..+.+. ....+.+.|++.. .|+++|||++|+|+..
T Consensus 94 ~~~~~~~~~~~~~d~-~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~ 143 (167)
T 2jsy_A 94 CGANGIDKVETLSDH-RDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYA 143 (167)
T ss_dssp GGGSSCTTEEEEEGG-GTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEE
T ss_pred HHhcCCCCceEeeCC-chhHHHHHhCCccccCCceeeEEEEEcCCCcEEEE
Confidence 888887 45444441 2246889999987 4999999999999875
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-17 Score=149.44 Aligned_cols=113 Identities=22% Similarity=0.207 Sum_probs=93.3
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCC-CHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASW-CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~w-C~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|.++|+| +.+.+|+.+++++++|| +||+||++| |++|+.++|.|.+++++ . ++.|++|+.| +.+..++|+
T Consensus 19 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~-~v~vv~Is~D-~~~~~~~~~ 93 (175)
T 1xvq_A 19 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---S-GATVLCVSKD-LPFAQKRFC 93 (175)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---T-TCEEEEEESS-CHHHHTTCC
T ss_pred CcCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---c-CCEEEEEECC-CHHHHHHHH
Confidence 579999999 66789999999999999 999999999 99999999999999988 3 4999999997 466778888
Q ss_pred HhCCC-cccccCCchhHHHHHHhcCCCCc---------cEEEEECCCCcEEEc
Q 008336 91 SKMPW-LAVPFSDSETRDKLDELFKVMGI---------PHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~-~~~~~~~~~~~~~l~~~~~v~~~---------P~~~lid~~G~i~~~ 133 (569)
+++++ .+..+.+.. ..+.+.|++... |+++|||++|+|+..
T Consensus 94 ~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~ 144 (175)
T 1xvq_A 94 GAEGTENVMPASAFR--DSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYT 144 (175)
T ss_dssp ------CEEEEECTT--SSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEE
T ss_pred HHcCCCCceEeeCCH--HHHHHHhCCcccccccCCcccceEEEECCCCeEEEE
Confidence 88877 455455544 468899999877 999999999999875
|
| >1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=9.3e-18 Score=132.46 Aligned_cols=80 Identities=59% Similarity=1.174 Sum_probs=75.1
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhcCCCcccccccc-cceeeecccCeeeccCCCCCCCceeEEcCCCCCCccccccCCcC
Q 008336 463 GAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGED 541 (569)
Q Consensus 463 g~~~~p~~~~~~~~l~~~l~~l~~~~~~~~~~~~~-~~~l~~~~~~~~~c~~C~~~g~~~~~~~~~~~~~~~~~~~~~~~ 541 (569)
|++|||||++.+.+|.+.+.+.-+.+|.+++|..| +|+|.|....+|.|+.|++.+.+|.|+|..|+|+||+.||+...
T Consensus 1 ~~~a~pfte~~~~~~~~~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~~~~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p~ 80 (89)
T 1v5n_A 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNED 80 (89)
T ss_dssp CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECCSSCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSS
T ss_pred CCcccccCHHHHHHHHHHHhHHHHcCCceecCCCCCCCccEEeeCCCeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCCC
Confidence 57899999999999999999999999999999999 79999988779999999999999999999999999999998654
Q ss_pred C
Q 008336 542 K 542 (569)
Q Consensus 542 ~ 542 (569)
.
T Consensus 81 ~ 81 (89)
T 1v5n_A 81 T 81 (89)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=154.21 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=98.3
Q ss_pred cccCccCCcee----cCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 14 LLSSSARDFLI----RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 14 ~~g~~~pdf~~----~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
.+|.++|+|.+ +.+|+.++|++++|| +||+|| ++||++|+.++|.|.+++++|++.+ ++|++|++| +.+...
T Consensus 63 ~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~g-v~vv~IS~D-~~~~~~ 140 (254)
T 3tjj_A 63 KISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN-TEVVACSVD-SQFTHL 140 (254)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTT-EEEEEEESS-CHHHHH
T ss_pred CCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC-CEEEEEcCC-CHHHHH
Confidence 57999999953 236789999999999 999999 9999999999999999999999875 999999998 566778
Q ss_pred HHHHhC-------CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 88 GYFSKM-------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~-------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
+|+++. ++.+..+.|.. ..+++.|++. .+|++||||++|+|+..
T Consensus 141 ~~~~~~~~~~g~~~~~fp~l~D~~--~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~ 197 (254)
T 3tjj_A 141 AWINTPRRQGGLGPIRIPLLSDLT--HQISKDYGVYLEDSGHTLRGLFIIDDKGILRQI 197 (254)
T ss_dssp HHHTSCGGGTSCCSCSSCEEECTT--SHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHHhcCCcccccceeeCcH--HHHHHHcCCccccCCCccceEEEECCCCeEEEE
Confidence 888765 45555555544 4799999996 58999999999999874
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=151.79 Aligned_cols=136 Identities=17% Similarity=0.232 Sum_probs=107.0
Q ss_pred cCCcccee-cCCCCceecccCCCC--EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHh
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGK--TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 412 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk--~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 412 (569)
...|+|.+ +.+| ++++++++|| +||++||++||++|..+++.|++++++|+++ +++||+||+|.. ...++|++
T Consensus 9 ~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~--~v~vi~IS~D~~-~~~~~~~~ 84 (224)
T 1prx_A 9 DVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR--NVKLIALSIDSV-EDHLAWSK 84 (224)
T ss_dssp CBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSCH-HHHHHHHH
T ss_pred CCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHC--CCEEEEEcCCCH-HHHHHHHH
Confidence 34689988 8899 9999999998 5666678999999999999999999999875 799999999854 45556655
Q ss_pred cC---------CCcccccCchhhHHHHHhcCCC------------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCH
Q 008336 413 GM---------PWLALPFGDARKASLSRKFKVS------------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTE 471 (569)
Q Consensus 413 ~~---------~~~~~~~~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~ 471 (569)
.. ..+.||++.|....+++.|++. .+|++||||++|+|+....+.. ..+
T Consensus 85 ~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~----------~~g 154 (224)
T 1prx_A 85 DINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPA----------TTG 154 (224)
T ss_dssp HHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCT----------TBC
T ss_pred HHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCC----------CCC
Confidence 30 2378899999889999999984 3799999999999999853211 112
Q ss_pred HHHHHHHHHhhhhh
Q 008336 472 ERMKEIDGQYNEMA 485 (569)
Q Consensus 472 ~~~~~l~~~l~~l~ 485 (569)
++.+++.+.|+.+.
T Consensus 155 r~~~eil~~i~~l~ 168 (224)
T 1prx_A 155 RNFDEILRVVISLQ 168 (224)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 34566777776654
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-17 Score=145.05 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=98.8
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc---EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK---IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 88 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk---vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~ 88 (569)
.+|.++|+| +.+.+|+.+++++++|| ++|+|| ++||++|+.++|.|.+++++|++++ .|++|++| +.+.+++
T Consensus 8 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~vv~is~d-~~~~~~~ 84 (159)
T 2a4v_A 8 EIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA--AVFGLSAD-SVTSQKK 84 (159)
T ss_dssp CTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC--EEEEEESC-CHHHHHH
T ss_pred CCCCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC--cEEEEeCC-CHHHHHH
Confidence 579999999 56789999999999774 788887 9999999999999999999998875 99999998 5778899
Q ss_pred HHHhCCCcccccCCchhHHHHHHhcCCCCcc------EEEEECCCCcEEEc
Q 008336 89 YFSKMPWLAVPFSDSETRDKLDELFKVMGIP------HLVILDENGKVLSD 133 (569)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P------~~~lid~~G~i~~~ 133 (569)
|++++++.+..+.|.. ..+.+.|++...| +++|| ++|+|+..
T Consensus 85 ~~~~~~~~~~~l~D~~--~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~ 132 (159)
T 2a4v_A 85 FQSKQNLPYHLLSDPK--REFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFK 132 (159)
T ss_dssp HHHHHTCSSEEEECTT--CHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEE
T ss_pred HHHHhCCCceEEECCc--cHHHHHhCCcccccCCccceEEEE-cCCEEEEE
Confidence 9999887766566543 4688999999988 89999 99999874
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=152.75 Aligned_cols=139 Identities=10% Similarity=0.169 Sum_probs=111.8
Q ss_pred cCCcccee-cC-CCC--ceeccc-CCCCEEEEEEe-cCCChhHH-hhhHHHHHHHHHHhhcCCCe-EEEEEeCCCChhHH
Q 008336 336 SGDLDFVV-GK-NGG--KVPVSD-LAGKTILLYFS-AHWCPPCR-AFLPKLIDAYKKIKERNESL-EVVFISSDRDQTSF 407 (569)
Q Consensus 336 ~~~~~f~~-~~-~g~--~v~l~~-~~gk~vll~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~-~vv~is~d~~~~~~ 407 (569)
...|+|.+ +. +|+ .+++++ ++||++||+|| ++||++|+ .++|.|++++++++++ ++ .|++||.|. ....
T Consensus 7 ~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~--~~~~vv~is~d~-~~~~ 83 (241)
T 1nm3_A 7 KKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY--GVDDILVVSVND-TFVM 83 (241)
T ss_dssp SBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT--TCCEEEEEESSC-HHHH
T ss_pred CCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEEcCC-HHHH
Confidence 34689988 64 677 999999 89999999999 99999999 9999999999999876 69 999999984 6788
Q ss_pred HHHHhcCCCcccccCchhhHHHHHhcCCC-----------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHH
Q 008336 408 DEFFKGMPWLALPFGDARKASLSRKFKVS-----------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 476 (569)
Q Consensus 408 ~~~~~~~~~~~~~~~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~ 476 (569)
++|.++++...+|++.|.++.+++.||+. ..|+++|| ++|+|++...+.. ...-|+...+.++
T Consensus 84 ~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~-----~~~~~~~~~~~~~ 157 (241)
T 1nm3_A 84 NAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPN-----EPGDPFKVSDADT 157 (241)
T ss_dssp HHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECCS-----CSSCCCSSSSHHH
T ss_pred HHHHHhcCCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEecc-----CCCccceecCHHH
Confidence 89999888556999999999999999986 35999999 9999999854321 0001222356666
Q ss_pred HHHHhhh
Q 008336 477 IDGQYNE 483 (569)
Q Consensus 477 l~~~l~~ 483 (569)
+.+.|+.
T Consensus 158 il~~l~~ 164 (241)
T 1nm3_A 158 MLKYLAP 164 (241)
T ss_dssp HHHHHCT
T ss_pred HHHHhhh
Confidence 6666653
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.5e-17 Score=150.26 Aligned_cols=133 Identities=9% Similarity=0.046 Sum_probs=107.4
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCC-ChhHH-----hhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCR-----AFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 408 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~-----~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~ 408 (569)
...|+|.+ +.+|+.++|++++||++||+||+.| ||+|. .+++.|.++ + .++.||+||.| ++...+
T Consensus 26 ~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~----~gv~VvgIS~D-s~~~~~ 97 (224)
T 3keb_A 26 DYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W----PHLKLIVITVD-SPSSLA 97 (224)
T ss_dssp CBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C----TTSEEEEEESS-CHHHHH
T ss_pred CCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c----CCCEEEEEECC-CHHHHH
Confidence 34699988 9999999999999999999999888 99999 888888776 4 25899999998 567888
Q ss_pred HHHhcCCCcccccCchh-hHHHHHhcCCCC---------ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHH
Q 008336 409 EFFKGMPWLALPFGDAR-KASLSRKFKVSG---------IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEID 478 (569)
Q Consensus 409 ~~~~~~~~~~~~~~~d~-~~~l~~~~~v~~---------~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~ 478 (569)
+|.++++...||++.|. ...+++.|||.. .|++||||++|+|++...... +....+.+++.
T Consensus 98 ~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~---------~~~~pd~~evl 168 (224)
T 3keb_A 98 RARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLAN---------TRDFFDFDAIE 168 (224)
T ss_dssp HHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSB---------TTCCCCHHHHH
T ss_pred HHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCC---------CCCCCCHHHHH
Confidence 99998885479999998 689999999975 799999999999999864321 12233455555
Q ss_pred HHhhhhh
Q 008336 479 GQYNEMA 485 (569)
Q Consensus 479 ~~l~~l~ 485 (569)
+.|+++.
T Consensus 169 ~~L~~l~ 175 (224)
T 3keb_A 169 KLLQEGE 175 (224)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 6555554
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=150.78 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=105.8
Q ss_pred cCCcccee-cC--CCCceecccCCCC--EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHH
Q 008336 336 SGDLDFVV-GK--NGGKVPVSDLAGK--TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 410 (569)
Q Consensus 336 ~~~~~f~~-~~--~g~~v~l~~~~gk--~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~ 410 (569)
...|+|.+ +. +| ++++++++|| +||++||++||++|..+++.|++++++|+++ +++||+||+|.. ...++|
T Consensus 7 ~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~--~v~vi~vS~D~~-~~~~~~ 82 (220)
T 1xcc_A 7 ATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL--NCKLIGFSCNSK-ESHDKW 82 (220)
T ss_dssp CBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT--TEEEEEEESSCH-HHHHHH
T ss_pred CCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCH-HHHHHH
Confidence 44689988 77 88 9999999998 4555568999999999999999999999875 799999999853 445555
Q ss_pred Hh-------cCCCcccccCchhhHHHHHhcCCC------------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCH
Q 008336 411 FK-------GMPWLALPFGDARKASLSRKFKVS------------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTE 471 (569)
Q Consensus 411 ~~-------~~~~~~~~~~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~ 471 (569)
.+ +. .+.||++.|....+++.|++. .+|++||||++|+|+....+.. -.+
T Consensus 83 ~~~i~~~~~~~-~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~----------~~g 151 (220)
T 1xcc_A 83 IEDIKYYGKLN-KWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPA----------TTG 151 (220)
T ss_dssp HHHHHHHHTCS-CCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECT----------TBC
T ss_pred HHHHHHHhcCC-CCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEecCC----------CCC
Confidence 54 33 378899999999999999984 4799999999999999853211 112
Q ss_pred HHHHHHHHHhhhhh
Q 008336 472 ERMKEIDGQYNEMA 485 (569)
Q Consensus 472 ~~~~~l~~~l~~l~ 485 (569)
++.++|.+.|+.+.
T Consensus 152 ~~~~ell~~i~~lq 165 (220)
T 1xcc_A 152 RNAHEILRVLKSLQ 165 (220)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 35566777776654
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=145.16 Aligned_cols=116 Identities=16% Similarity=0.267 Sum_probs=93.0
Q ss_pred ccccCccCCcee-cC----CC-----ceeecCCC-CCc--EEEEEecCCCHhhHhh-HHHHHHHHHHhcCCCCEE-EEEE
Q 008336 13 SLLSSSARDFLI-RS----NG-----DQVKLDSL-KGK--IGLYFSASWCGPCQRF-TPILAEVYNELSRQGDFE-VIFV 77 (569)
Q Consensus 13 ~~~g~~~pdf~~-~~----~g-----~~v~l~~~-~gk--vlv~F~a~wC~~C~~~-~p~l~~~~~~~~~~g~~~-vv~v 77 (569)
..+|.++|+|.+ +. +| +.++++++ +|| ||++||++|||+|+.+ +|.|++++++|++++ +. |++|
T Consensus 7 ~~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g-~~~vv~I 85 (171)
T 2pwj_A 7 TDILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKG-VDSVICV 85 (171)
T ss_dssp ---CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTT-CSEEEEE
T ss_pred ccccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEE
Confidence 457889999944 44 47 89999996 996 6778899999999999 999999999998875 88 9999
Q ss_pred eCCCCHHHHHHHHHhCCC--cccccCCchhHHHHHHhcCCCC-----------ccEEEEECCCCcEEEc
Q 008336 78 SGDEDDEAFKGYFSKMPW--LAVPFSDSETRDKLDELFKVMG-----------IPHLVILDENGKVLSD 133 (569)
Q Consensus 78 ~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~~-----------~P~~~lid~~G~i~~~ 133 (569)
+.| +.+..++|++++++ .+..+.|.+ ..+++.||+.. .|+.++|| +|+|++.
T Consensus 86 s~d-~~~~~~~~~~~~~~~~~fp~l~D~~--~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~ 150 (171)
T 2pwj_A 86 AIN-DPYTVNAWAEKIQAKDAIEFYGDFD--GSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKAL 150 (171)
T ss_dssp ESS-CHHHHHHHHHHTTCTTTSEEEECTT--CHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEE
T ss_pred eCC-CHHHHHHHHHHhCCCCceEEEECCc--cHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEE
Confidence 998 56788999999986 344445544 46889999853 56888888 9999874
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-16 Score=148.67 Aligned_cols=115 Identities=13% Similarity=0.147 Sum_probs=95.8
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc--EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK--IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk--vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
.+|+++|+| +.+.+| .+++++++|+ ++|+|| ++|||+|..+++.|++++++|++.+ ++||+|++|. .+..++|
T Consensus 4 ~iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~-v~vigIS~D~-~~~~~~~ 80 (233)
T 2v2g_A 4 TLGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRG-VKLIALSCDN-VADHKEW 80 (233)
T ss_dssp CTTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTT-EEEEEEESSC-HHHHHHH
T ss_pred CCCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcC-CEEEEEcCCC-HHHHHHH
Confidence 479999999 556789 8999999887 888888 9999999999999999999998875 9999999984 5666777
Q ss_pred HH------hC--CCcccccCCchhHHHHHHhcCCC------------CccEEEEECCCCcEEEc
Q 008336 90 FS------KM--PWLAVPFSDSETRDKLDELFKVM------------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~------~~--~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~ 133 (569)
++ +. ++.+..+.|.. ..+++.|++. .+|++||||++|+|+..
T Consensus 81 ~~~i~~~~~~~~~~~fpil~D~~--~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~ 142 (233)
T 2v2g_A 81 SEDVKCLSGVKGDMPYPIIADET--RELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLS 142 (233)
T ss_dssp HHHHHHHHTCCSSCSSCEEECTT--CHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEE
T ss_pred HHHHHHhhCcccCCceEEEECCh--HHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEE
Confidence 76 45 55554455543 4689999985 57999999999999874
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-16 Score=158.24 Aligned_cols=189 Identities=18% Similarity=0.210 Sum_probs=128.0
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCC--
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG-- 117 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~-- 117 (569)
++|.||++||++|.++.|.|.+++++++. .+.++.|+++.... ..+++.||+.+
T Consensus 138 ~~v~F~~~~~~~~~~~~~~~~~~A~~~~~--~i~f~~vd~~~~~~----------------------~~~~~~fgi~~~~ 193 (361)
T 3uem_A 138 HILLFLPKSVSDYDGKLSNFKTAAESFKG--KILFIFIDSDHTDN----------------------QRILEFFGLKKEE 193 (361)
T ss_dssp EEEEECCSSSSSHHHHHHHHHHHHGGGTT--TCEEEEECTTSGGG----------------------HHHHHHTTCCTTT
T ss_pred EEEEEEeCCchhHHHHHHHHHHHHHHccC--ceEEEEecCChHHH----------------------HHHHHHcCCCccC
Confidence 78999999999999999999999999975 47888888773211 36889999988
Q ss_pred ccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccC--CCceeecCCCceeeecc-
Q 008336 118 IPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSH--SRDFVISSDGRKISVSD- 194 (569)
Q Consensus 118 ~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~--~~d~~~~~~~~~~~~~~- 194 (569)
+|++++++.++... .|......++.+.|.++++..........+.+-.... ....+...+++++....
T Consensus 194 ~P~~~~~~~~~~~~---------ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~~~ 264 (361)
T 3uem_A 194 CPAVRLITLEEEMT---------KYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAF 264 (361)
T ss_dssp CSEEEEEECC--CC---------EECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEECTTTHHHHHT
T ss_pred CccEEEEEcCCccc---------ccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcccccCCcEEeecCchhhhcc
Confidence 99999997644321 1221223567788888776643211111111110000 11122333444443322
Q ss_pred ccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcc
Q 008336 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (569)
Q Consensus 195 ~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~ 274 (569)
..++.++++|+++||++|+.+.|.+.++++.++... . ++++.+|.+.. . ++.|+
T Consensus 265 ~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~-~--v~~~~vd~~~~---------------------~--~~~~~ 318 (361)
T 3uem_A 265 DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHE-N--IVIAKMDSTAN---------------------E--VEAVK 318 (361)
T ss_dssp CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCS-S--EEEEEEETTTC---------------------B--CSSCC
T ss_pred cCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCC-c--EEEEEEECCcc---------------------c--hhhcC
Confidence 368999999999999999999999999999987642 2 55666665431 1 46789
Q ss_pred cCCCceEEEECCC
Q 008336 275 LSTLPTLVIIGPD 287 (569)
Q Consensus 275 v~~~Ptlvi~~~~ 287 (569)
|.++||++++..+
T Consensus 319 v~~~Pt~~~~~~~ 331 (361)
T 3uem_A 319 VHSFPTLKFFPAS 331 (361)
T ss_dssp CCSSSEEEEECSS
T ss_pred CcccCeEEEEECC
Confidence 9999999999655
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=145.86 Aligned_cols=139 Identities=19% Similarity=0.198 Sum_probs=112.9
Q ss_pred hccCCcccee----cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHH
Q 008336 334 LVSGDLDFVV----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 408 (569)
Q Consensus 334 ~~~~~~~f~~----~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~ 408 (569)
....+|+|.+ +.++++++|++++||++||+|| +.||+.|..+++.|++.+++|++. +++|++||+|.. ...+
T Consensus 25 VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~--g~~vigiS~Ds~-~sh~ 101 (216)
T 3sbc_A 25 VQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQ--GAQVLFASTDSE-YSLL 101 (216)
T ss_dssp TTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHT--TEEEEEEESSCH-HHHH
T ss_pred cCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccC--CceEEEeecCch-hhHH
Confidence 4456799964 6677899999999999999999 999999999999999999999987 799999999954 5666
Q ss_pred HHHhcC------CCcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHH
Q 008336 409 EFFKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 476 (569)
Q Consensus 409 ~~~~~~------~~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~ 476 (569)
+|.+.. ..+.||++.|.+.++++.|||- ..+++||||++|+|++...... -.++++++
T Consensus 102 aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~----------~~grn~dE 171 (216)
T 3sbc_A 102 AWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDL----------PVGRNVDE 171 (216)
T ss_dssp HHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECT----------TBCCCHHH
T ss_pred HHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCC----------CCCCCHHH
Confidence 666543 2478999999999999999983 4689999999999998743211 23456777
Q ss_pred HHHHhhhhh
Q 008336 477 IDGQYNEMA 485 (569)
Q Consensus 477 l~~~l~~l~ 485 (569)
+++.|+.+.
T Consensus 172 iLr~l~AlQ 180 (216)
T 3sbc_A 172 ALRLVEAFQ 180 (216)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777777653
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.8e-16 Score=145.66 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=93.3
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc---EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK---IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk---vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
.+|+++|+| +.+.+| .+++++++|+ ||++||++|||+|..+++.|++++++|++.+ ++||+|++|. .+..++|
T Consensus 6 ~~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~-v~vi~IS~D~-~~~~~~~ 82 (224)
T 1prx_A 6 LLGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN-VKLIALSIDS-VEDHLAW 82 (224)
T ss_dssp CTTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT-EEEEEEESSC-HHHHHHH
T ss_pred CCcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCC-CEEEEEcCCC-HHHHHHH
Confidence 479999999 556789 9999999886 4455689999999999999999999999875 9999999984 4556667
Q ss_pred HHh----------CCCcccccCCchhHHHHHHhcCCC------------CccEEEEECCCCcEEEc
Q 008336 90 FSK----------MPWLAVPFSDSETRDKLDELFKVM------------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~----------~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~ 133 (569)
+++ .++.+..+.|.. ..+++.|++. .+|++||||++|+|+..
T Consensus 83 ~~~i~~~~~~~~~~~~~fpil~D~~--~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~ 146 (224)
T 1prx_A 83 SKDINAYNSEEPTEKLPFPIIDDRN--RELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLS 146 (224)
T ss_dssp HHHHHHHTTSCCCSCCSSCEEECTT--CHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEE
T ss_pred HHHHHHhhCcccccCcCcceeecCc--hHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEE
Confidence 665 555554455543 4688999984 47999999999999874
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.2e-16 Score=147.65 Aligned_cols=116 Identities=17% Similarity=0.261 Sum_probs=93.1
Q ss_pred ccccCccCCc-eecCCCceeec-CCC--CCc--EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKL-DSL--KGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l-~~~--~gk--vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
..+|+++|+| +.+.+| .+++ +++ +|| ||++||++||++|..+++.|.+++++|++.+ ++|++||+|. ....
T Consensus 5 ~~iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~g-v~VI~VS~Ds-~~~~ 81 (249)
T 3a2v_A 5 PLIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG-VDLIGLSVDS-VFSH 81 (249)
T ss_dssp CCTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTT-EEEEEEESSC-HHHH
T ss_pred CCCCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCC-cEEEEEECCC-HHHH
Confidence 3589999999 446778 7999 999 999 4557899999999999999999999998875 9999999985 3444
Q ss_pred HHHHHh------CCCcccccCCchhHHHHHHhcCCC-------CccEEEEECCCCcEEEc
Q 008336 87 KGYFSK------MPWLAVPFSDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~------~~~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~ 133 (569)
.+|.+. .++.+..+.|.. ..+++.|++. ++|++||||++|+|+..
T Consensus 82 ~~w~~~~~~~~~~~i~fPil~D~~--~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~ 139 (249)
T 3a2v_A 82 IKWKEWIERHIGVRIPFPIIADPQ--GTVARRLGLLHAESATHTVRGVFIVDARGVIRTM 139 (249)
T ss_dssp HHHHHHHHHHTCCCCCSCEEECTT--SHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEE
T ss_pred HHHHHHHHHhcCCCCceeEEECCc--hHHHHHhCCccccCCCcccceEEEECCCCeEEEE
Confidence 445442 344444444533 4789999997 89999999999999874
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-16 Score=151.11 Aligned_cols=137 Identities=14% Similarity=0.183 Sum_probs=106.9
Q ss_pred ccCCcccee-cCCCCceec-ccC--CCCE-EEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHH
Q 008336 335 VSGDLDFVV-GKNGGKVPV-SDL--AGKT-ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 409 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~v~l-~~~--~gk~-vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~ 409 (569)
....|+|.+ +.+| ++++ +++ +||+ ||++||++||++|..+++.|++++++|+++ +++||+||+|.. ....+
T Consensus 8 G~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~--gv~VI~VS~Ds~-~~~~~ 83 (249)
T 3a2v_A 8 GERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL--GVDLIGLSVDSV-FSHIK 83 (249)
T ss_dssp TSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHT--TEEEEEEESSCH-HHHHH
T ss_pred CCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhC--CcEEEEEECCCH-HHHHH
Confidence 345689988 7788 7999 999 9996 556789999999999999999999999876 699999999854 33444
Q ss_pred HHhc----C-CCcccccCchhhHHHHHhcCCC-------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHH
Q 008336 410 FFKG----M-PWLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 477 (569)
Q Consensus 410 ~~~~----~-~~~~~~~~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 477 (569)
|.+. . ..+.||++.|....+++.|++. ++|++||||++|+|+....+.. -.+++.++|
T Consensus 84 w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~----------~~gr~~~El 153 (249)
T 3a2v_A 84 WKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPM----------ELGRLVDEI 153 (249)
T ss_dssp HHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECT----------TBCCCHHHH
T ss_pred HHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCC----------cccchhHHH
Confidence 4432 1 1478899999999999999997 8999999999999999853221 112345666
Q ss_pred HHHhhhhh
Q 008336 478 DGQYNEMA 485 (569)
Q Consensus 478 ~~~l~~l~ 485 (569)
.+.|+.+.
T Consensus 154 lr~I~alq 161 (249)
T 3a2v_A 154 LRIVKALK 161 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-16 Score=145.01 Aligned_cols=115 Identities=16% Similarity=0.239 Sum_probs=92.3
Q ss_pred cccCccCCce-ecC--CCceeecCCCCCc--EEEE-EecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 14 LLSSSARDFL-IRS--NGDQVKLDSLKGK--IGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 14 ~~g~~~pdf~-~~~--~g~~v~l~~~~gk--vlv~-F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
.+|+++|+|. .+. +| .+++++++|| ++|. ||++|||+|..+++.|++++++|++.+ ++|++|++|. .+..+
T Consensus 4 ~iG~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~-v~vi~vS~D~-~~~~~ 80 (220)
T 1xcc_A 4 HLGATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN-CKLIGFSCNS-KESHD 80 (220)
T ss_dssp CTTCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT-EEEEEEESSC-HHHHH
T ss_pred CCCCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEeCCC-HHHHH
Confidence 4799999994 456 88 8999999987 4444 589999999999999999999999875 9999999984 45556
Q ss_pred HHHH-------hCCCcccccCCchhHHHHHHhcCCC------------CccEEEEECCCCcEEEc
Q 008336 88 GYFS-------KMPWLAVPFSDSETRDKLDELFKVM------------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~-------~~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~ 133 (569)
+|++ +.++.+..+.|.. ..+++.|++. .+|++||||++|+|+..
T Consensus 81 ~~~~~i~~~~~~~~~~fpil~D~~--~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~ 143 (220)
T 1xcc_A 81 KWIEDIKYYGKLNKWEIPIVCDES--RELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKAT 143 (220)
T ss_dssp HHHHHHHHHHTCSCCCCCEEECTT--SHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHHHhcCCCCcceeEECch--hHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEE
Confidence 6655 3455555455543 4688999983 47999999999999874
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-15 Score=140.74 Aligned_cols=171 Identities=16% Similarity=0.191 Sum_probs=112.2
Q ss_pred EEEEEecCC--CHhhHhhHHHHHHHHHHhcC-CCC--EEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 40 IGLYFSASW--CGPCQRFTPILAEVYNELSR-QGD--FEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 40 vlv~F~a~w--C~~C~~~~p~l~~~~~~~~~-~g~--~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
|+|.||++| |++|+.+.|.+.++++.... +|+ +.++.++.+... .+++.|+
T Consensus 28 v~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~------------------------~~~~~~g 83 (243)
T 2hls_A 28 VEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDS------------------------DKFSEFK 83 (243)
T ss_dssp EEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTH------------------------HHHHHTT
T ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCH------------------------HHHHhcC
Confidence 999999999 99999999999999987531 233 888888888664 4889999
Q ss_pred CCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHH-HHhhcccccccccCCCceeecCCCceee-e
Q 008336 115 VMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEER-AKREQSLRSVLTSHSRDFVISSDGRKIS-V 192 (569)
Q Consensus 115 v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~l~~~~~~~~~d~~~~~~~~~~~-~ 192 (569)
|.++|++.++ +| ..... |.. +...+..++..... ......+ +.+... +
T Consensus 84 v~~~Pt~~i~--~g-~~~~~--------G~~----~~~~l~~fv~~~l~~~~~~~~l---------------~~~~~~~~ 133 (243)
T 2hls_A 84 VERVPTVAFL--GG-EVRWT--------GIP----AGEEIRALVEVIMRLSEDESGL---------------EDATKEAL 133 (243)
T ss_dssp CCSSSEEEET--TT-TEEEE--------SCC----CTTHHHHHHHHHHHHHTTCCCC---------------CHHHHHHH
T ss_pred CCcCCEEEEE--CC-ceeEc--------CCC----cHHHHHHHHHHHHhccCCCCCC---------------CHHHHHHH
Confidence 9999999998 35 22211 211 11233333322110 0000000 000000 1
Q ss_pred ccccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCC-CceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHh
Q 008336 193 SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG-ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (569)
Q Consensus 193 ~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~-~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~ 271 (569)
..+.++.+++.|+++||++|+.+.|.+.+++..+..++ .++.+..+.++. ...+++
T Consensus 134 ~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~-----------------------~~~~~~ 190 (243)
T 2hls_A 134 KSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE-----------------------NPDIAD 190 (243)
T ss_dssp HHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT-----------------------CHHHHH
T ss_pred HHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECcc-----------------------CHHHHH
Confidence 13457888999999999999999999999998874211 234444444433 346788
Q ss_pred hcccCCCceEEEECCCCCc
Q 008336 272 YFELSTLPTLVIIGPDGKT 290 (569)
Q Consensus 272 ~f~v~~~Ptlvi~~~~g~~ 290 (569)
.|+|.++||+++ +|+.
T Consensus 191 ~~~V~~vPt~~i---~G~~ 206 (243)
T 2hls_A 191 KYGVMSVPSIAI---NGYL 206 (243)
T ss_dssp HTTCCSSSEEEE---TTEE
T ss_pred HcCCeeeCeEEE---CCEE
Confidence 999999999988 5654
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.3e-16 Score=144.67 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=94.6
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCC-CHhhH-----hhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASW-CGPCQ-----RFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~w-C~~C~-----~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~ 85 (569)
.+|.++|+| +.+.+|+.++|++++|| ++|+||++| ||+|. .+++.|.++ + .+ +.|++||.| +...
T Consensus 23 ~vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~g-v~VvgIS~D-s~~~ 95 (224)
T 3keb_A 23 RKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PH-LKLIVITVD-SPSS 95 (224)
T ss_dssp CTTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TT-SEEEEEESS-CHHH
T ss_pred CCCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CC-CEEEEEECC-CHHH
Confidence 579999999 55789999999999999 999999988 99999 888888877 4 44 899999998 6788
Q ss_pred HHHHHHhCCCc-ccccCCchhHHHHHHhcCCCC---------ccEEEEECCCCcEEEc
Q 008336 86 FKGYFSKMPWL-AVPFSDSETRDKLDELFKVMG---------IPHLVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~~---------~P~~~lid~~G~i~~~ 133 (569)
.++|.+++++. +..+.|.. ...+++.||+.. .|++||||++|+|++.
T Consensus 96 ~~~f~~~~gl~~fplLsD~~-~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~ 152 (224)
T 3keb_A 96 LARARHEHGLPNIALLSTLR-GRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYS 152 (224)
T ss_dssp HHHHHHHHCCTTCEEEESTT-CTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEE
T ss_pred HHHHHHHcCCCCceEEEcCC-chHHHHHhCCccccccccCCccCEEEEEcCCCEEEEE
Confidence 99999999884 55555542 136889999864 7999999999999975
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-15 Score=138.53 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=95.8
Q ss_pred ccccCccCCcee----cCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 13 SLLSSSARDFLI----RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 13 ~~~g~~~pdf~~----~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
..||++||||.+ +.++++++|++++|| ++|+|| +.|||.|..+++.|++.+++|++.+ ++|++||+| +....
T Consensus 23 ~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g-~~vigiS~D-s~~sh 100 (216)
T 3sbc_A 23 AQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQG-AQVLFASTD-SEYSL 100 (216)
T ss_dssp CCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTT-EEEEEEESS-CHHHH
T ss_pred hhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCC-ceEEEeecC-chhhH
Confidence 468999999943 346689999999999 999999 9999999999999999999999886 999999999 56677
Q ss_pred HHHHHhCC-------CcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 87 KGYFSKMP-------WLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
.+|..... ..+..+.|.+ ..+++.||+. ..+.+||||++|+|+..
T Consensus 101 ~aw~~~~~~~~~~~~l~fpllsD~~--~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~ 158 (216)
T 3sbc_A 101 LAWTNIPRKEGGLGPINIPLLADTN--HSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHI 158 (216)
T ss_dssp HHHHTSCGGGTCCCSCSSCEEECTT--SHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHHHhCCccCcccceEeCCC--CHHHHHcCCeeccCCceeeEEEEECCCCeEEEE
Confidence 77776441 2333344444 4799999983 46899999999999873
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=125.76 Aligned_cols=71 Identities=18% Similarity=0.518 Sum_probs=62.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+|+|+|+|||+||+||+.+.|.+.++++.++ ++.++.|++|..+ ++++.|+|
T Consensus 19 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~d~~~-----------------------~l~~~~~V 71 (105)
T 3zzx_A 19 GNKLVVIDFYATWCGPCKMIAPKLEELSQSMS----DVVFLKVDVDECE-----------------------DIAQDNQI 71 (105)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TEEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCCCccCCCcchhhhhhccC----CeEEEEEecccCH-----------------------HHHHHcCC
Confidence 47999999999999999999999999988875 4788888888665 58999999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++ ++|+++.+.
T Consensus 72 ~~~PT~~~~-~~G~~v~~~ 89 (105)
T 3zzx_A 72 ACMPTFLFM-KNGQKLDSL 89 (105)
T ss_dssp CBSSEEEEE-ETTEEEEEE
T ss_pred CeecEEEEE-ECCEEEEEE
Confidence 999999999 799999874
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=140.63 Aligned_cols=139 Identities=18% Similarity=0.219 Sum_probs=112.9
Q ss_pred hccCCccce----e-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHH
Q 008336 334 LVSGDLDFV----V-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSF 407 (569)
Q Consensus 334 ~~~~~~~f~----~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~ 407 (569)
....+|+|. + +.+|++++|++++||+|||+|| +.||+.|..++..|++++++|++. +++|++||+|.. ..-
T Consensus 28 vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~--g~~vigiS~Ds~-~sh 104 (219)
T 3tue_A 28 INSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNEL--NCEVLACSIDSE-YAH 104 (219)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTT--TEEEEEEESSCH-HHH
T ss_pred cCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccC--CcEEEEeeCCch-hhH
Confidence 455679996 5 7889999999999999999999 899999999999999999999977 799999999954 566
Q ss_pred HHHHhcC------CCcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHH
Q 008336 408 DEFFKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 475 (569)
Q Consensus 408 ~~~~~~~------~~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~ 475 (569)
++|.... ..+.||++.|.++++++.|||- ....+||||++|+|+...... .-.+++++
T Consensus 105 ~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~----------~~~gr~~~ 174 (219)
T 3tue_A 105 LQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVND----------MPVGRSVE 174 (219)
T ss_dssp HHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC----------TTCCCCHH
T ss_pred HHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEec----------CCCCCCHH
Confidence 6666543 2478999999999999999984 246899999999999874211 12345677
Q ss_pred HHHHHhhhhh
Q 008336 476 EIDGQYNEMA 485 (569)
Q Consensus 476 ~l~~~l~~l~ 485 (569)
++++.|+.+.
T Consensus 175 EvLr~l~aLQ 184 (219)
T 3tue_A 175 EVLRLLEAFQ 184 (219)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7777777653
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-15 Score=149.62 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=106.3
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
..|+|.+ +.+|++++|++++||+|||+|| +.|||.|..+++.|.+ ...++++|++||.| +....++|.+++
T Consensus 3 k~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~------~~~~~~~v~gis~D-~~~~~~~f~~~~ 75 (322)
T 4eo3_A 3 RVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR------ENFEKAQVVGISRD-SVEALKRFKEKN 75 (322)
T ss_dssp BCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH------SCCTTEEEEEEESC-CHHHHHHHHHHH
T ss_pred CCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH------HhhCCCEEEEEeCC-CHHHHHHHHHhh
Confidence 4689998 9999999999999999999999 6799999999887753 12346999999998 557788899888
Q ss_pred CCcccccCchhhHHHHHhcCCC----CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhh
Q 008336 415 PWLALPFGDARKASLSRKFKVS----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 485 (569)
Q Consensus 415 ~~~~~~~~~d~~~~l~~~~~v~----~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~ 485 (569)
+ +.||++.|.++.+++.|||. .+|++||||++|+|++... + --...+.+++++.++++.
T Consensus 76 ~-l~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~~~-------~----v~~~~h~~~~l~~~~~~~ 138 (322)
T 4eo3_A 76 D-LKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWR-------R----VKVEGHVQEVKEALDRLI 138 (322)
T ss_dssp T-CCSEEEECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEEEE-------S----CCSTTHHHHHHHHHHHHH
T ss_pred C-CceEEEEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEEEe-------C----CCccccHHHHHHHHhhhc
Confidence 7 78999999999999999994 5899999999999987631 1 023456667777766664
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-15 Score=141.34 Aligned_cols=69 Identities=19% Similarity=0.406 Sum_probs=58.5
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
.++ ++|+|||+||++|+++.|.+.++++++.... .+.++.|+++.+.. ..+++.|+
T Consensus 29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~----------------------~~l~~~~~ 86 (244)
T 3q6o_A 29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETN----------------------SAVCRDFN 86 (244)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTT----------------------HHHHHHTT
T ss_pred CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhh----------------------HHHHHHcC
Confidence 357 9999999999999999999999999998621 59999999964321 36999999
Q ss_pred CCCccEEEEECCC
Q 008336 115 VMGIPHLVILDEN 127 (569)
Q Consensus 115 v~~~P~~~lid~~ 127 (569)
|.++|++++++++
T Consensus 87 v~~~Pt~~~~~~g 99 (244)
T 3q6o_A 87 IPGFPTVRFFXAF 99 (244)
T ss_dssp CCSSSEEEEECTT
T ss_pred CCccCEEEEEeCC
Confidence 9999999999753
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-15 Score=130.71 Aligned_cols=84 Identities=21% Similarity=0.430 Sum_probs=76.1
Q ss_pred ecCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccC
Q 008336 343 VGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 422 (569)
Q Consensus 343 ~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~ 422 (569)
.+.+|....++.++|+++||+||++||++|+.+.|.|.+++++++++ +.++.|++|.+.
T Consensus 37 ~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~------------------ 95 (141)
T 3hxs_A 37 ADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKVNVDKEP------------------ 95 (141)
T ss_dssp CCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH------------------
T ss_pred hccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc---eEEEEEECCCCH------------------
Confidence 37788899999999999999999999999999999999999999764 899999988765
Q ss_pred chhhHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 423 DARKASLSRKFKVSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 423 ~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~ 452 (569)
.+++.|+|.++|++++++++|+++.
T Consensus 96 -----~~~~~~~v~~~Pt~~~~~~~g~~~~ 120 (141)
T 3hxs_A 96 -----ELARDFGIQSIPTIWFVPMKGEPQV 120 (141)
T ss_dssp -----HHHHHTTCCSSSEEEEECSSSCCEE
T ss_pred -----HHHHHcCCCCcCEEEEEeCCCCEEE
Confidence 4899999999999999999999873
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=134.48 Aligned_cols=116 Identities=19% Similarity=0.244 Sum_probs=95.4
Q ss_pred cccCccCCcee-----cCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 14 LLSSSARDFLI-----RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 14 ~~g~~~pdf~~-----~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
.||++||||.. +.+|+.++|++++|| ++|+|| +.|||.|..++..|++.+++|++.+ ++|++||+| +....
T Consensus 27 ~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g-~~vigiS~D-s~~sh 104 (219)
T 3tue_A 27 KINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELN-CEVLACSID-SEYAH 104 (219)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTT-EEEEEEESS-CHHHH
T ss_pred ccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCC-cEEEEeeCC-chhhH
Confidence 68999999942 457889999999999 999999 9999999999999999999999886 999999999 56677
Q ss_pred HHHHHhC-------CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 87 KGYFSKM-------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
.+|..+. ...+..+.|.+ ..+++.||+. ....+||||++|+|+..
T Consensus 105 ~~w~~~~~~~~~~~~l~fpllsD~~--~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~ 162 (219)
T 3tue_A 105 LQWTLQDRKKGGLGTMAIPILADKT--KNIARSYGVLEESQGVAYRGLFIIDPHGMLRQI 162 (219)
T ss_dssp HHHHHSCGGGTCCCSCSSCEEECTT--SHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHhhhhHHhcCccccccccccCcc--cHHHHHcCCcccCCCeeEEEEEEECCCCeEEEE
Confidence 7787653 23333344444 4799999983 24688999999999863
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.8e-15 Score=125.41 Aligned_cols=107 Identities=14% Similarity=0.211 Sum_probs=79.8
Q ss_pred CCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCch
Q 008336 345 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDA 424 (569)
Q Consensus 345 ~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d 424 (569)
.+|........+||+++|+||++||++|+.+.|.|.+++++++. ++.++.|++|.+.
T Consensus 14 ~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~---~v~~~~v~~~~d~-------------------- 70 (126)
T 2l57_A 14 INVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG---KFNIYYARLEEEK-------------------- 70 (126)
T ss_dssp CSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS---SCEEEEEETTSSH--------------------
T ss_pred cchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC---CeEEEEEeCCCCc--------------------
Confidence 33333334555689999999999999999999999999999863 4899999944222
Q ss_pred hhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 008336 425 RKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 489 (569)
Q Consensus 425 ~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~ 489 (569)
..++++.|+|.++||+++++++|+++.+..+. .. .++|.+.|++++...+
T Consensus 71 -~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~-----------~~---~~~l~~~l~~~~~~~~ 120 (126)
T 2l57_A 71 -NIDLAYKYDANIVPTTVFLDKEGNKFYVHQGL-----------MR---KNNIETILNSLGVKEG 120 (126)
T ss_dssp -HHHHHHHTTCCSSSEEEEECTTCCEEEEEESC-----------CC---HHHHHHHHHHHCCCCC
T ss_pred -hHHHHHHcCCcceeEEEEECCCCCEEEEecCC-----------CC---HHHHHHHHHHHhcccc
Confidence 23689999999999999999999998873221 22 2456666776665443
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=152.50 Aligned_cols=80 Identities=21% Similarity=0.430 Sum_probs=63.5
Q ss_pred cCCCceeecCCC-CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCC-CCEEEEEEeCCCCHHHHHHHHHhCCCcccccC
Q 008336 25 RSNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101 (569)
Q Consensus 25 ~~~g~~v~l~~~-~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~-g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 101 (569)
.++++.+...-. .++ ++|+|||+||++|++++|.+.++++++++. ..+.++.|+++.+..
T Consensus 16 ~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~----------------- 78 (519)
T 3t58_A 16 LLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETN----------------- 78 (519)
T ss_dssp EECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGG-----------------
T ss_pred ECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCcccc-----------------
Confidence 344444433222 357 999999999999999999999999999862 259999999975321
Q ss_pred CchhHHHHHHhcCCCCccEEEEECC
Q 008336 102 DSETRDKLDELFKVMGIPHLVILDE 126 (569)
Q Consensus 102 ~~~~~~~l~~~~~v~~~P~~~lid~ 126 (569)
..+++.|+|.++|+++++++
T Consensus 79 -----~~l~~~~~V~~~PTl~~f~~ 98 (519)
T 3t58_A 79 -----SAVCREFNIAGFPTVRFFQA 98 (519)
T ss_dssp -----HHHHHHTTCCSBSEEEEECT
T ss_pred -----HHHHHHcCCcccCEEEEEcC
Confidence 46999999999999999986
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.3e-15 Score=131.46 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=84.0
Q ss_pred cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCccc
Q 008336 344 GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLAL 419 (569)
Q Consensus 344 ~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 419 (569)
+..++.+.++..+||+++|+|| ++||++|+++.|.| .++.+.+..+ +.++.|+.+.... +.+
T Consensus 34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~---~~~v~vd~~~~~~-----------~~~ 99 (154)
T 2ju5_A 34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVH---LHMVEVDFPQKNH-----------QPE 99 (154)
T ss_dssp ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHH---CEEEEEECCSSCC-----------CCH
T ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCc---EEEEEecCccccC-----------CCh
Confidence 3345666777778999999999 99999999999999 6776655443 8888888876531 122
Q ss_pred ccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhc
Q 008336 420 PFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 486 (569)
Q Consensus 420 ~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~ 486 (569)
+. .+....+++.|+|.++||++|+|++|+++.+. + +.+...+++.+.|+++++
T Consensus 100 ~~-~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~~-G------------~~~~~~~~l~~~l~~~l~ 152 (154)
T 2ju5_A 100 EQ-RQKNQELKAQYKVTGFPELVFIDAEGKQLARM-G------------FEPGGGAAYVSKVKSALK 152 (154)
T ss_dssp HH-HHHHHHHHHHTTCCSSSEEEEECTTCCEEEEE-C------------CCTTCHHHHHHHHHHHHT
T ss_pred hh-HhhHHHHHHHcCCCCCCEEEEEcCCCCEEEEe-c------------CCCCCHHHHHHHHHHHHh
Confidence 21 34567899999999999999999999999873 2 112234556666666654
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.1e-14 Score=124.07 Aligned_cols=83 Identities=25% Similarity=0.451 Sum_probs=74.2
Q ss_pred ecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCC
Q 008336 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (569)
Q Consensus 24 ~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (569)
.+.+|..++++.++|+ ++|+||++||++|+.+.|.|.++++++.+ ++.++.|+++.+.
T Consensus 37 ~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~------------------- 95 (141)
T 3hxs_A 37 ADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG--KIYIYKVNVDKEP------------------- 95 (141)
T ss_dssp CCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH-------------------
T ss_pred hccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--ceEEEEEECCCCH-------------------
Confidence 3467888999999999 99999999999999999999999999874 4899999998764
Q ss_pred chhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 103 SETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|+|.++|+++++|++|+++.
T Consensus 96 -----~~~~~~~v~~~Pt~~~~~~~g~~~~ 120 (141)
T 3hxs_A 96 -----ELARDFGIQSIPTIWFVPMKGEPQV 120 (141)
T ss_dssp -----HHHHHTTCCSSSEEEEECSSSCCEE
T ss_pred -----HHHHHcCCCCcCEEEEEeCCCCEEE
Confidence 4889999999999999999998764
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-14 Score=120.96 Aligned_cols=84 Identities=21% Similarity=0.493 Sum_probs=73.0
Q ss_pred cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCc
Q 008336 344 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 423 (569)
Q Consensus 344 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~ 423 (569)
..+++.+.....+||+++|+||++||++|+++.|.|.+++++++++ +.++.|++|..+
T Consensus 29 ~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---v~~~~vd~d~~~------------------- 86 (128)
T 3ul3_B 29 QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR---IYLLKVDLDKNE------------------- 86 (128)
T ss_dssp CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---EEEEEEEGGGCH-------------------
T ss_pred cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCCH-------------------
Confidence 3455566666778999999999999999999999999999999864 899999888664
Q ss_pred hhhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 424 ARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 424 d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
.+++.|+|+++||++++ ++|+++.+.
T Consensus 87 ----~l~~~~~v~~~Pt~~~~-~~G~~~~~~ 112 (128)
T 3ul3_B 87 ----SLARKFSVKSLPTIILL-KNKTMLARK 112 (128)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred ----HHHHHcCCCCcCEEEEE-ECCEEEEEe
Confidence 58999999999999999 799998874
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=124.98 Aligned_cols=69 Identities=9% Similarity=0.173 Sum_probs=62.6
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++|||+|||+||+||+.+.|.|.+++++++++ +.|+.|++|..+ +++..|+|+
T Consensus 41 ~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~---v~f~kVDVDe~~-----------------------e~a~~y~V~ 94 (160)
T 2av4_A 41 ERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF---CVIYLVDITEVP-----------------------DFNTMYELY 94 (160)
T ss_dssp SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCC-----------------------TTTTTTTCC
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCC---cEEEEEECCCCH-----------------------HHHHHcCCC
Confidence 689999999999999999999999999999765 889999999876 489999999
Q ss_pred CccEEEEECCCCcEEE
Q 008336 437 GIPMLVAIGPSGRTIT 452 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~ 452 (569)
++||++++ ++|+.+.
T Consensus 95 siPT~~fF-k~G~~v~ 109 (160)
T 2av4_A 95 DPVSVMFF-YRNKHMM 109 (160)
T ss_dssp SSEEEEEE-ETTEEEE
T ss_pred CCCEEEEE-ECCEEEE
Confidence 99999999 7888873
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.9e-14 Score=121.73 Aligned_cols=77 Identities=31% Similarity=0.501 Sum_probs=66.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHH--HHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLI--DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~--~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
||++||+||++||++|+.+.|.|. ++.+.++++ +.++.|+++.. +...++++.|+
T Consensus 29 ~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~---~~~~~vd~~~~--------------------~~~~~l~~~~~ 85 (133)
T 3fk8_A 29 HKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH---FEVVKIDVGNF--------------------DRNLELSQAYG 85 (133)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH---CEEEEEECTTT--------------------TSSHHHHHHTT
T ss_pred CCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC---EEEEEEeCCcc--------------------cchHHHHHHhC
Confidence 899999999999999999999999 999988765 89999998421 11246899999
Q ss_pred C---CCccEEEEECCCCcEEEccch
Q 008336 435 V---SGIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 435 v---~~~Pt~~lid~~G~i~~~~~~ 456 (569)
| .++||++++|++|+++.+..+
T Consensus 86 v~~~~~~Pt~~~~d~~G~~~~~~~g 110 (133)
T 3fk8_A 86 DPIQDGIPAVVVVNSDGKVRYTTKG 110 (133)
T ss_dssp CGGGGCSSEEEEECTTSCEEEECCS
T ss_pred CccCCccceEEEECCCCCEEEEecC
Confidence 9 999999999999999988654
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=125.95 Aligned_cols=92 Identities=18% Similarity=0.402 Sum_probs=74.8
Q ss_pred CCccce-e-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 337 GDLDFV-V-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 337 ~~~~f~-~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
..|+|. + +.++....+++.+||++||+||++||++|+++.|.+ .++++.++ ++.++.|+++...
T Consensus 9 ~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~----~~~~~~vd~~~~~------- 77 (134)
T 2fwh_A 9 THLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA----DTVLLQANVTAND------- 77 (134)
T ss_dssp -CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT----TSEEEEEECTTCC-------
T ss_pred cCCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc----CcEEEEEeCCCCc-------
Confidence 346665 3 555556677777799999999999999999999998 88888775 3889999887542
Q ss_pred hcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 412 KGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 412 ~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~ 451 (569)
+....+++.|+|.++|+++++|++|+++
T Consensus 78 ------------~~~~~l~~~~~v~~~Pt~~~~d~~G~~v 105 (134)
T 2fwh_A 78 ------------AQDVALLKHLNVLGLPTILFFDGQGQEH 105 (134)
T ss_dssp ------------HHHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred ------------chHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence 2345789999999999999999999998
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=137.52 Aligned_cols=108 Identities=24% Similarity=0.296 Sum_probs=92.0
Q ss_pred CccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhC
Q 008336 17 SSARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (569)
Q Consensus 17 ~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~ 93 (569)
+.+|+| +.+.+|++++|++++|| |+|+|| +.|||.|..+++.|.+. ..+ +++|++||.| +.+..++|.+++
T Consensus 2 ak~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~~----~~~-~~~v~gis~D-~~~~~~~f~~~~ 75 (322)
T 4eo3_A 2 ARVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSRE----NFE-KAQVVGISRD-SVEALKRFKEKN 75 (322)
T ss_dssp CBCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHHS----CCT-TEEEEEEESC-CHHHHHHHHHHH
T ss_pred CCCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHH----hhC-CCEEEEEeCC-CHHHHHHHHHhh
Confidence 468999 66799999999999999 999999 67999999998888642 223 4999999997 678889999999
Q ss_pred CCcccccCCchhHHHHHHhcCCC----CccEEEEECCCCcEEE
Q 008336 94 PWLAVPFSDSETRDKLDELFKVM----GIPHLVILDENGKVLS 132 (569)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~----~~P~~~lid~~G~i~~ 132 (569)
+..+..+.|.+. .+++.||+. .+|++||||++|+|++
T Consensus 76 ~l~fp~l~D~~~--~v~~~ygv~~~~~~~r~tfiId~~G~i~~ 116 (322)
T 4eo3_A 76 DLKVTLLSDPEG--ILHEFFNVLENGKTVRSTFLIDRWGFVRK 116 (322)
T ss_dssp TCCSEEEECTTC--HHHHHTTCEETTEECCEEEEECTTSBEEE
T ss_pred CCceEEEEcCch--HHHHhcCCCCCCcCccEEEEECCCCEEEE
Confidence 988777777654 799999994 5789999999999986
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.8e-14 Score=116.76 Aligned_cols=71 Identities=28% Similarity=0.593 Sum_probs=62.0
Q ss_pred CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 35 ~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
+..+| ++|+|||+||++|+.+.|.+.++++.+. ++.++.|++|..+ .+++.|
T Consensus 17 ~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~d~~~------------------------~l~~~~ 69 (105)
T 3zzx_A 17 EAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS---DVVFLKVDVDECE------------------------DIAQDN 69 (105)
T ss_dssp HTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TEEEEEEETTTCH------------------------HHHHHT
T ss_pred hcCCCEEEEEEECCCCCCccCCCcchhhhhhccC---CeEEEEEecccCH------------------------HHHHHc
Confidence 34578 9999999999999999999999998875 4889999998764 489999
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 114 KVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 114 ~v~~~P~~~lid~~G~i~~~ 133 (569)
+|+++||++++ ++|+++.+
T Consensus 70 ~V~~~PT~~~~-~~G~~v~~ 88 (105)
T 3zzx_A 70 QIACMPTFLFM-KNGQKLDS 88 (105)
T ss_dssp TCCBSSEEEEE-ETTEEEEE
T ss_pred CCCeecEEEEE-ECCEEEEE
Confidence 99999999988 78988763
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-14 Score=124.64 Aligned_cols=96 Identities=23% Similarity=0.420 Sum_probs=74.4
Q ss_pred ccccCccCCce-ec-CCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 13 SLLSSSARDFL-IR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 13 ~~~g~~~pdf~-~~-~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
..+|.++|+|. +. .++....+++.+|| +||+|||+||++|+.+.|.+ .++++.++ ++.++.|+++...+
T Consensus 4 ~~~~~~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~---~~~~~~vd~~~~~~-- 78 (134)
T 2fwh_A 4 TAQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA---DTVLLQANVTANDA-- 78 (134)
T ss_dssp ------CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT---TSEEEEEECTTCCH--
T ss_pred ccccccCCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc---CcEEEEEeCCCCcc--
Confidence 34678899995 33 35556677777899 99999999999999999999 88888875 38899999875311
Q ss_pred HHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 87 KGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 131 (569)
....+++.|+|.++|+++++|++|+++
T Consensus 79 ------------------~~~~l~~~~~v~~~Pt~~~~d~~G~~v 105 (134)
T 2fwh_A 79 ------------------QDVALLKHLNVLGLPTILFFDGQGQEH 105 (134)
T ss_dssp ------------------HHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred ------------------hHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence 224689999999999999999999886
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=118.29 Aligned_cols=83 Identities=19% Similarity=0.272 Sum_probs=68.3
Q ss_pred CCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCch
Q 008336 26 SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSE 104 (569)
Q Consensus 26 ~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 104 (569)
.+|........+|| ++|+||++||++|+.+.|.|.+++++++ . ++.++.|+++.+..
T Consensus 14 ~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~-~-~v~~~~v~~~~d~~-------------------- 71 (126)
T 2l57_A 14 INVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE-G-KFNIYYARLEEEKN-------------------- 71 (126)
T ss_dssp CSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS-S-SCEEEEEETTSSHH--------------------
T ss_pred cchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc-C-CeEEEEEeCCCCch--------------------
Confidence 45544446666889 9999999999999999999999999987 3 59999999442221
Q ss_pred hHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 105 TRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 105 ~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
..+++.|+|.++|+++++|++|+++.
T Consensus 72 --~~~~~~~~v~~~Pt~~~~~~~G~~~~ 97 (126)
T 2l57_A 72 --IDLAYKYDANIVPTTVFLDKEGNKFY 97 (126)
T ss_dssp --HHHHHHTTCCSSSEEEEECTTCCEEE
T ss_pred --HHHHHHcCCcceeEEEEECCCCCEEE
Confidence 36889999999999999999999876
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.2e-14 Score=119.69 Aligned_cols=90 Identities=20% Similarity=0.423 Sum_probs=73.4
Q ss_pred cCccCCceecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCC
Q 008336 16 SSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMP 94 (569)
Q Consensus 16 g~~~pdf~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~ 94 (569)
..++|++. ..+++.++....+|| ++|+|||+||++|+++.|.+.++++++++ ++.++.|+++...
T Consensus 21 ~~~~~~~~-~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~vd~d~~~----------- 86 (128)
T 3ul3_B 21 FKKVPRLQ-QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK--RIYLLKVDLDKNE----------- 86 (128)
T ss_dssp -----CCC-CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG--GEEEEEEEGGGCH-----------
T ss_pred hccCCccc-cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEECCCCH-----------
Confidence 45566664 456777888888999 99999999999999999999999999974 4999999988764
Q ss_pred CcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 95 WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
.+++.|+|.++|+++++ ++|+++.+
T Consensus 87 -------------~l~~~~~v~~~Pt~~~~-~~G~~~~~ 111 (128)
T 3ul3_B 87 -------------SLARKFSVKSLPTIILL-KNKTMLAR 111 (128)
T ss_dssp -------------HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred -------------HHHHHcCCCCcCEEEEE-ECCEEEEE
Confidence 48899999999999999 68887753
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-14 Score=117.70 Aligned_cols=71 Identities=23% Similarity=0.485 Sum_probs=63.2
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
++|+++|+||++||++|+++.|.|.+++++++ ++.++.|++|... .+++.|+|
T Consensus 23 ~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~----~~~~~~vd~~~~~-----------------------~l~~~~~v 75 (109)
T 3f3q_A 23 QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP----QADFYKLDVDELG-----------------------DVAQKNEV 75 (109)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC----CCEEEEEECCCCH-----------------------HHHHHcCC
Confidence 48999999999999999999999999999885 3788999888664 48999999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||+++++ +|+++.+.
T Consensus 76 ~~~Pt~~~~~-~G~~~~~~ 93 (109)
T 3f3q_A 76 SAMPTLLLFK-NGKEVAKV 93 (109)
T ss_dssp CSSSEEEEEE-TTEEEEEE
T ss_pred CccCEEEEEE-CCEEEEEE
Confidence 9999999996 99998873
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=120.01 Aligned_cols=70 Identities=24% Similarity=0.542 Sum_probs=63.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|+++|+||++||++|+++.|.|.+++++++++ +.++.|++|.+. ++++.|+|.
T Consensus 38 ~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v~ 91 (136)
T 2l5l_A 38 DKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYKVDTEKEQ-----------------------ELAGAFGIR 91 (136)
T ss_dssp SSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---EEEEEEeCCCCH-----------------------HHHHHcCCC
Confidence 789999999999999999999999999998754 899999988664 488999999
Q ss_pred CccEEEEECCCCcEEE
Q 008336 437 GIPMLVAIGPSGRTIT 452 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~ 452 (569)
++||++++|++|+++.
T Consensus 92 ~~Pt~~~~~~~G~~~~ 107 (136)
T 2l5l_A 92 SIPSILFIPMEGKPEM 107 (136)
T ss_dssp SSCEEEEECSSSCCEE
T ss_pred CCCEEEEECCCCcEEE
Confidence 9999999999999873
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.7e-14 Score=118.77 Aligned_cols=71 Identities=20% Similarity=0.398 Sum_probs=62.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
++|+++|+||++||++|+++.|.|.+++++++ ++.++.|++|..+ ++++.|+|
T Consensus 30 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~-----------------------~l~~~~~v 82 (116)
T 3qfa_C 30 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS----NVIFLEVDVDDCQ-----------------------DVASECEV 82 (116)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT----TSEEEEEETTTTH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CCEEEEEECCCCH-----------------------HHHHHcCC
Confidence 48999999999999999999999999888874 3888999888664 58999999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++||++++ ++|+++.+.
T Consensus 83 ~~~Pt~~~~-~~G~~~~~~ 100 (116)
T 3qfa_C 83 KSMPTFQFF-KKGQKVGEF 100 (116)
T ss_dssp CSSSEEEEE-SSSSEEEEE
T ss_pred ccccEEEEE-eCCeEEEEE
Confidence 999999999 899998873
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=123.32 Aligned_cols=104 Identities=16% Similarity=0.338 Sum_probs=89.4
Q ss_pred CceecccC-CCCEEE-EEEecCCChhHHh-hhHHHHHHHHHHhhcCCCe-EEEEEeCCCChhHHHHHHhcCCCc-ccccC
Q 008336 348 GKVPVSDL-AGKTIL-LYFSAHWCPPCRA-FLPKLIDAYKKIKERNESL-EVVFISSDRDQTSFDEFFKGMPWL-ALPFG 422 (569)
Q Consensus 348 ~~v~l~~~-~gk~vl-l~F~a~wC~~C~~-~~~~l~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~-~~~~~ 422 (569)
++++|+++ +||+++ ++||+.|||.|.. ++|.|.+.+++|+++ ++ +|++||+| ++...++|.++++.. .||++
T Consensus 37 ~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~--g~d~VigIS~D-~~~~~~~f~~~~~l~~~f~lL 113 (176)
T 4f82_A 37 NACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAA--GIDEIWCVSVN-DAFVMGAWGRDLHTAGKVRMM 113 (176)
T ss_dssp EEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT--TCCEEEEEESS-CHHHHHHHHHHTTCTTTSEEE
T ss_pred eEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhC--CCCEEEEEeCC-CHHHHHHHHHHhCCCCCceEE
Confidence 68899997 998654 5666999999999 999999999999976 68 99999999 567888999888743 49999
Q ss_pred chhhHHHHHhcCCC------C-----ccEEEEECCCCcEEEccc
Q 008336 423 DARKASLSRKFKVS------G-----IPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 423 ~d~~~~l~~~~~v~------~-----~Pt~~lid~~G~i~~~~~ 455 (569)
.|.+.++++.||+. + .|++||| ++|+|++...
T Consensus 114 sD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~ 156 (176)
T 4f82_A 114 ADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAV 156 (176)
T ss_dssp ECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEE
T ss_pred EcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEE
Confidence 99999999999983 2 4889999 9999999854
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=114.25 Aligned_cols=72 Identities=24% Similarity=0.460 Sum_probs=65.1
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.++++.++++ +.++.|++|..+ .+++.|+|
T Consensus 20 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~i 73 (109)
T 3tco_A 20 NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK---AVFGRLNVDENQ-----------------------KIADKYSV 73 (109)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC---ceEEEEccccCH-----------------------HHHHhcCc
Confidence 4899999999999999999999999999999764 899999988765 48999999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++|+++++ ++|+++.+.
T Consensus 74 ~~~Pt~~~~-~~g~~~~~~ 91 (109)
T 3tco_A 74 LNIPTTLIF-VNGQLVDSL 91 (109)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred ccCCEEEEE-cCCcEEEee
Confidence 999999999 999998874
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-14 Score=122.14 Aligned_cols=94 Identities=9% Similarity=0.086 Sum_probs=71.1
Q ss_pred CCEEEEEEecCC--ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 357 GKTILLYFSAHW--CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 357 gk~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
+++|||+|||+| |++|+.+.|.|.+++++|.++ .+.|+.|++|.++ +++..|+
T Consensus 34 ~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~--~v~~~KVdvDe~~-----------------------~lA~~yg 88 (140)
T 2qgv_A 34 APDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDY--TWQVAIADLEQSE-----------------------AIGDRFG 88 (140)
T ss_dssp CSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTS--CCEEEECCHHHHH-----------------------HHHHHHT
T ss_pred CCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCC--eEEEEEEECCCCH-----------------------HHHHHcC
Confidence 568899999999 999999999999999998642 2778877777554 5999999
Q ss_pred CCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCc
Q 008336 435 VSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 490 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~ 490 (569)
|+++||++++ ++|+++.+..|. .+ -++|.+.|+++++..+.
T Consensus 89 V~sIPTlilF-k~G~~v~~~~G~------------~~--k~~l~~~i~~~l~~~~~ 129 (140)
T 2qgv_A 89 AFRFPATLVF-TGGNYRGVLNGI------------HP--WAELINLMRGLVEPQQE 129 (140)
T ss_dssp CCSSSEEEEE-ETTEEEEEEESC------------CC--HHHHHHHHHHHHC----
T ss_pred CccCCEEEEE-ECCEEEEEEecC------------CC--HHHHHHHHHHHhcCCCC
Confidence 9999999999 899999984321 11 13466666666654443
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=117.95 Aligned_cols=72 Identities=22% Similarity=0.368 Sum_probs=65.1
Q ss_pred CCEEEEEEecCCC--hhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 357 GKTILLYFSAHWC--PPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 357 gk~vll~F~a~wC--~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
+++|||+|||+|| +||+.+.|.|.+++++|.++ +.|+.|++|.++ ++++.|+
T Consensus 33 ~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~---v~~~KVdvDe~~-----------------------~la~~yg 86 (137)
T 2qsi_A 33 GKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR---LVAAEVAAEAER-----------------------GLMARFG 86 (137)
T ss_dssp SSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT---EEEEEECGGGHH-----------------------HHHHHHT
T ss_pred CCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC---cEEEEEECCCCH-----------------------HHHHHcC
Confidence 4599999999999 99999999999999999765 899999888665 5999999
Q ss_pred CCCccEEEEECCCCcEEEccc
Q 008336 435 VSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~~~~ 455 (569)
|+++||++++ ++|+++.+..
T Consensus 87 V~siPTlilF-kdG~~v~~~v 106 (137)
T 2qsi_A 87 VAVCPSLAVV-QPERTLGVIA 106 (137)
T ss_dssp CCSSSEEEEE-ECCEEEEEEE
T ss_pred CccCCEEEEE-ECCEEEEEEe
Confidence 9999999999 8999999854
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-13 Score=119.56 Aligned_cols=105 Identities=19% Similarity=0.394 Sum_probs=80.8
Q ss_pred cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCc
Q 008336 344 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 423 (569)
Q Consensus 344 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~ 423 (569)
..++..+......+++++|+||++||++|+.+.|.|++++++++++ +.++.|++|..+
T Consensus 42 ~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~~------------------- 99 (148)
T 3p2a_A 42 NATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK---VRFVKVNTEAEP------------------- 99 (148)
T ss_dssp ECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-------------------
T ss_pred ecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc---eEEEEEECcCCH-------------------
Confidence 4555555443346899999999999999999999999999998754 899999988765
Q ss_pred hhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 008336 424 ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 489 (569)
Q Consensus 424 d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~ 489 (569)
.+++.|+|.++||++++ ++|+++.+..+. .. .++|.+.|++++...|
T Consensus 100 ----~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~-----------~~---~~~l~~~l~~~l~~~~ 146 (148)
T 3p2a_A 100 ----ALSTRFRIRSIPTIMLY-RNGKMIDMLNGA-----------VP---KAPFDNWLDEQLSRDP 146 (148)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTEEEEEESSC-----------CC---HHHHHHHHHHHHHSCC
T ss_pred ----HHHHHCCCCccCEEEEE-ECCeEEEEEeCC-----------CC---HHHHHHHHHHHhcccC
Confidence 48999999999999999 699998863221 22 3456666666665544
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.6e-13 Score=132.73 Aligned_cols=86 Identities=19% Similarity=0.342 Sum_probs=66.5
Q ss_pred CCceecCCCceeecCC-CCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcc
Q 008336 20 RDFLIRSNGDQVKLDS-LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLA 97 (569)
Q Consensus 20 pdf~~~~~g~~v~l~~-~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~ 97 (569)
+.-.+.++.+.+.-.- -.++ ++|+|||+||++|++++|.|.++++++.. .+.++.|++|.+..
T Consensus 16 ~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~--~~~~~~v~~d~~~~------------- 80 (298)
T 3ed3_A 16 DPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDG--VVQVAAVNCDLNKN------------- 80 (298)
T ss_dssp CTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTSTTT-------------
T ss_pred CCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccC--CcEEEEEEccCccC-------------
Confidence 3335556655443321 2477 99999999999999999999999999964 48899999984321
Q ss_pred cccCCchhHHHHHHhcCCCCccEEEEECCCCcE
Q 008336 98 VPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130 (569)
Q Consensus 98 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i 130 (569)
..+++.|+|.++|++++++. |++
T Consensus 81 ---------~~l~~~~~I~~~Pt~~~~~~-g~~ 103 (298)
T 3ed3_A 81 ---------KALCAKYDVNGFPTLMVFRP-PKI 103 (298)
T ss_dssp ---------HHHHHHTTCCBSSEEEEEEC-CCC
T ss_pred ---------HHHHHhCCCCccceEEEEEC-Cce
Confidence 36999999999999999965 543
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=122.45 Aligned_cols=116 Identities=13% Similarity=0.176 Sum_probs=94.8
Q ss_pred ccccCccCCceec-C-C-------C--ceeecCCC-CCc--EEEEEecCCCHhhHh-hHHHHHHHHHHhcCCCCE-EEEE
Q 008336 13 SLLSSSARDFLIR-S-N-------G--DQVKLDSL-KGK--IGLYFSASWCGPCQR-FTPILAEVYNELSRQGDF-EVIF 76 (569)
Q Consensus 13 ~~~g~~~pdf~~~-~-~-------g--~~v~l~~~-~gk--vlv~F~a~wC~~C~~-~~p~l~~~~~~~~~~g~~-~vv~ 76 (569)
-.+|+++|+..+. . + | ++++|+++ +|| ||+.||+.|||.|.. ++|.|++.+++|++.| + +|++
T Consensus 10 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g-~d~Vig 88 (176)
T 4f82_A 10 IQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAG-IDEIWC 88 (176)
T ss_dssp CCTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred hhcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCC-CCEEEE
Confidence 3579999998432 2 2 1 68899997 999 455678999999999 9999999999999886 8 9999
Q ss_pred EeCCCCHHHHHHHHHhCCCc--ccccCCchhHHHHHHhcCCC-----------CccEEEEECCCCcEEEc
Q 008336 77 VSGDEDDEAFKGYFSKMPWL--AVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 77 v~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~ 133 (569)
||+| +....++|.++.+.. +..+.|.+ ..+++.||+. ..|+++|| ++|+|++.
T Consensus 89 IS~D-~~~~~~~f~~~~~l~~~f~lLsD~~--~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~ 154 (176)
T 4f82_A 89 VSVN-DAFVMGAWGRDLHTAGKVRMMADGS--AAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTL 154 (176)
T ss_dssp EESS-CHHHHHHHHHHTTCTTTSEEEECTT--CHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEE
T ss_pred EeCC-CHHHHHHHHHHhCCCCCceEEEcCc--hHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEE
Confidence 9999 678899999999876 55566654 4789999873 24889999 99999874
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.44 E-value=8.3e-14 Score=121.77 Aligned_cols=94 Identities=24% Similarity=0.471 Sum_probs=75.9
Q ss_pred CCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 355 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 355 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
.+||+++|+||++||++|+.+.|.|++++++++ ++.++.|++|... ++++.|+
T Consensus 44 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~v~~~~v~~~~~~-----------------------~~~~~~~ 96 (139)
T 3d22_A 44 RDGKIVLANFSARWCGPSRQIAPYYIELSENYP----SLMFLVIDVDELS-----------------------DFSASWE 96 (139)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSH-----------------------HHHHHTT
T ss_pred hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CCEEEEEeCcccH-----------------------HHHHHcC
Confidence 348999999999999999999999999998874 4899999988664 5889999
Q ss_pred CCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCcc
Q 008336 435 VSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN 491 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~~ 491 (569)
|.++||++++ ++|+++.+.. | .. .++|.+.|++++...|.+
T Consensus 97 v~~~Pt~~~~-~~G~~~~~~~-------G-----~~---~~~l~~~l~~~~~~~~~~ 137 (139)
T 3d22_A 97 IKATPTFFFL-RDGQQVDKLV-------G-----AN---KPELHKKITAILDSLPPS 137 (139)
T ss_dssp CCEESEEEEE-ETTEEEEEEE-------S-----CC---HHHHHHHHHHHHHTSCTT
T ss_pred CCcccEEEEE-cCCeEEEEEe-------C-----CC---HHHHHHHHHHHhccCCCC
Confidence 9999999999 8999988732 2 12 255677777777665543
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=113.45 Aligned_cols=72 Identities=26% Similarity=0.541 Sum_probs=65.0
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+. ++++.|+|
T Consensus 16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v 69 (112)
T 2voc_A 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK---LKIVKIDVDENQ-----------------------ETAGKYGV 69 (112)
T ss_dssp SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTT---CEEEEEETTTCC-----------------------SHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---cEEEEEECCCCH-----------------------HHHHHcCC
Confidence 5899999999999999999999999999998754 899999988664 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++||++++ ++|+++.+.
T Consensus 70 ~~~Pt~~~~-~~G~~~~~~ 87 (112)
T 2voc_A 70 MSIPTLLVL-KDGEVVETS 87 (112)
T ss_dssp CSBSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-eCCEEEEEE
Confidence 999999999 999998874
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-13 Score=112.82 Aligned_cols=72 Identities=25% Similarity=0.556 Sum_probs=64.2
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+|+++|+||++||++|+.+.|.|++++++++++ +.++.|++|.++ ++++.|+|
T Consensus 16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~~-----------------------~~~~~~~v 69 (105)
T 1nsw_A 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDENP-----------------------ETTSQFGI 69 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECcCCH-----------------------HHHHHcCC
Confidence 4789999999999999999999999999998754 899999988764 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++||++++ ++|+++.+.
T Consensus 70 ~~~Pt~~~~-~~G~~~~~~ 87 (105)
T 1nsw_A 70 MSIPTLILF-KGGRPVKQL 87 (105)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred ccccEEEEE-eCCeEEEEE
Confidence 999999999 899998763
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=119.30 Aligned_cols=100 Identities=14% Similarity=0.280 Sum_probs=74.3
Q ss_pred eecccCCCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhh
Q 008336 350 VPVSDLAGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARK 426 (569)
Q Consensus 350 v~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~ 426 (569)
+.++..+||++||+||++||++|+.+.|.+ .++.+.+... +.++.|+++.+. .
T Consensus 20 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~---------------------~ 75 (130)
T 2kuc_A 20 LKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH---FVNLKMDMEKGE---------------------G 75 (130)
T ss_dssp HHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH---SEEEEECSSSTT---------------------H
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC---eEEEEEecCCcc---------------------h
Confidence 444445689999999999999999999998 6666666544 777777766422 2
Q ss_pred HHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcC
Q 008336 427 ASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 487 (569)
Q Consensus 427 ~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~ 487 (569)
..+++.|+|.++|+++++|++|+++.+..+. .. .++|.+.|++++..
T Consensus 76 ~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G~-----------~~---~~~l~~~l~~~~~~ 122 (130)
T 2kuc_A 76 VELRKKYGVHAYPTLLFINSSGEVVYRLVGA-----------ED---APELLKKVKLGVES 122 (130)
T ss_dssp HHHHHHTTCCSSCEEEEECTTSCEEEEEESC-----------CC---HHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCCCCEEEEECCCCcEEEEecCC-----------CC---HHHHHHHHHHHHHh
Confidence 4689999999999999999999998873221 12 24566667766644
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-12 Score=123.39 Aligned_cols=192 Identities=12% Similarity=0.098 Sum_probs=112.3
Q ss_pred cCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhccc
Q 008336 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (569)
Q Consensus 196 ~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v 275 (569)
.++.++++|+++||++|+.+.|.+.++++.+.+.+..+.++.++++.+. ...+++.|+|
T Consensus 29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~---------------------~~~l~~~~~v 87 (244)
T 3q6o_A 29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET---------------------NSAVCRDFNI 87 (244)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTT---------------------THHHHHHTTC
T ss_pred CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchh---------------------hHHHHHHcCC
Confidence 4589999999999999999999999999999764445666666664433 5688999999
Q ss_pred CCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCccceecCCCCce--ecc
Q 008336 276 STLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV--PVS 353 (569)
Q Consensus 276 ~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~~~g~~v--~l~ 353 (569)
.++||+++++.+++.-... .+ .++ ..+.+.+.+++........ .+.. ...|.+... +...+ -+.
T Consensus 88 ~~~Pt~~~~~~g~~~~~g~---~~-~~~----g~~~~~l~~~i~~~l~~~~----~~~p-~~~p~l~~~-~~~~l~~~~~ 153 (244)
T 3q6o_A 88 PGFPTVRFFXAFTXNGSGA---VF-PVA----GADVQTLRERLIDALESHH----DTWP-PACPPLEPA-XLEEIDGFFA 153 (244)
T ss_dssp CSSSEEEEECTTCCSSSCE---EC-CCT----TCCHHHHHHHHHHHHHTCT----TSCC-TTSCCCSCC-CHHHHHTHHH
T ss_pred CccCEEEEEeCCCcCCCCe---eE-ecC----CCCHHHHHHHHHHHHHhcc----ccCC-CCCCCcccc-cHHHHHHHhh
Confidence 9999999998643321000 00 011 1255666665554332111 0000 001111110 00000 001
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
.-..+++.+.|...-|..++. +...+... ..+.+..+. + ....+++.|
T Consensus 154 ~~~~~~~al~f~~~~~~~~~~-------~~~d~~~~-~~i~v~~~~-~-----------------------~~~~l~~~f 201 (244)
T 3q6o_A 154 RNNEEYLALIFEXGGSYLARE-------VALDLSQH-KGVAVRRVL-N-----------------------TEANVVRKF 201 (244)
T ss_dssp HCCCSEEEEEEECTTCCHHHH-------HHHHTTTC-TTEEEEEEE-T-----------------------TCHHHHHHH
T ss_pred cCCCceEEEEEEECCcchHHH-------HHHHhccC-CceEEEEEe-C-----------------------chHHHHHHc
Confidence 112456666666554432222 22223211 134443332 2 224689999
Q ss_pred CCCCccEEEEECCCCcEEEcc
Q 008336 434 KVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+|+++|++++++++|++...+
T Consensus 202 ~v~~~Pslvl~~~~g~~~~~~ 222 (244)
T 3q6o_A 202 GVTDFPSCYLLFRNGSVSRVP 222 (244)
T ss_dssp TCCCSSEEEEEETTSCEEECC
T ss_pred CCCCCCeEEEEeCCCCeEeec
Confidence 999999999999999998875
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-13 Score=111.19 Aligned_cols=72 Identities=28% Similarity=0.582 Sum_probs=64.2
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.++ ++++.|+|
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v 72 (108)
T 2trx_A 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-----------------------GTAPKYGI 72 (108)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCT-----------------------THHHHTTC
T ss_pred cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCC---cEEEEEECCCCH-----------------------HHHHHcCC
Confidence 4799999999999999999999999999998754 899999888664 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++||++++ ++|+++.+.
T Consensus 73 ~~~Pt~~~~-~~G~~~~~~ 90 (108)
T 2trx_A 73 RGIPTLLLF-KNGEVAATK 90 (108)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred cccCEEEEE-eCCEEEEEE
Confidence 999999999 899998763
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-13 Score=115.23 Aligned_cols=71 Identities=23% Similarity=0.558 Sum_probs=62.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
++++++|+||++||++|+.+.|.|.+++++++ ++.++.|++|... ++++.|+|
T Consensus 37 ~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~v~~~~vd~d~~~-----------------------~l~~~~~v 89 (124)
T 1xfl_A 37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP----NVLFLKVDTDELK-----------------------SVASDWAI 89 (124)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTSH-----------------------HHHHHTTC
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CcEEEEEECccCH-----------------------HHHHHcCC
Confidence 48999999999999999999999999988875 4889999888654 58899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++||++++ ++|+++.+.
T Consensus 90 ~~~Pt~~~~-~~G~~~~~~ 107 (124)
T 1xfl_A 90 QAMPTFMFL-KEGKILDKV 107 (124)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CccCEEEEE-ECCEEEEEE
Confidence 999999888 899998873
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-13 Score=122.19 Aligned_cols=104 Identities=9% Similarity=0.105 Sum_probs=76.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHH--HHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYK--KIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~--~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
.||+|||+|||+||++|+.+.|.+.+..+ .+.. ..++.|++|.+.. +++..|
T Consensus 43 ~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~----~~fv~V~vD~e~~----------------------~~~~~~ 96 (151)
T 3ph9_A 43 SKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ----NKFIMLNLMHETT----------------------DKNLSP 96 (151)
T ss_dssp HTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH----HTCEEEEESSCCS----------------------CGGGCT
T ss_pred cCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh----cCeEEEEecCCch----------------------hhHhhc
Confidence 38999999999999999999999876422 2222 2356666663321 235678
Q ss_pred CCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 008336 434 KVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 489 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~ 489 (569)
+++++||+++++++|+++.+..| .++...|++...+.+++.+.+++.++...
T Consensus 97 ~v~~~PT~~f~~~~G~~v~~~~G----~~~~~~~~~~~~~~~~ll~~~~~al~~~~ 148 (151)
T 3ph9_A 97 DGQYVPRIMFVDPSLTVRADIAG----RYSNRLYTYEPRDLPLLIENMKKALRLIQ 148 (151)
T ss_dssp TCCCSSEEEEECTTSCBCTTCCC----SCTTSTTCCCGGGHHHHHHHHHHHHSCCC
T ss_pred CCCCCCEEEEECCCCCEEEEEeC----CcCCcccccchhhHHHHHHHHHHHHHHHh
Confidence 99999999999999999987432 33455677888888889998888776543
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-13 Score=113.21 Aligned_cols=74 Identities=14% Similarity=0.380 Sum_probs=61.6
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
+.++++++|+||++||++|+.+.|.|.+++++++ ++.++.|+++.. ...+++.|
T Consensus 21 ~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~----------------------~~~~~~~~ 74 (111)
T 2pu9_C 21 AAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL----DVIFLKLDCNQE----------------------NKTLAKEL 74 (111)
T ss_dssp TCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSST----------------------THHHHHHH
T ss_pred hcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC----CeEEEEEecCcc----------------------hHHHHHHc
Confidence 3358999999999999999999999999988875 378888888732 13588999
Q ss_pred CCCCccEEEEECCCCcEEEcc
Q 008336 434 KVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+|+++||++++ ++|+++.+.
T Consensus 75 ~v~~~Pt~~~~-~~G~~~~~~ 94 (111)
T 2pu9_C 75 GIRVVPTFKIL-KENSVVGEV 94 (111)
T ss_dssp CCSBSSEEEEE-SSSSEEEEE
T ss_pred CCCeeeEEEEE-eCCcEEEEE
Confidence 99999996555 899998763
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-13 Score=123.60 Aligned_cols=102 Identities=23% Similarity=0.475 Sum_probs=77.8
Q ss_pred ccCccCCceecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 15 LSSSARDFLIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 15 ~g~~~pdf~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
++.+.++| +..++.++++..+|| ++|+|| |+||++|+.++|.+ .++.+.+.. ++.++.|+++....
T Consensus 26 ~~~~~~~~--~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~--~~~~v~vd~~~~~~----- 96 (154)
T 2ju5_A 26 IAAANLQW--ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV--HLHMVEVDFPQKNH----- 96 (154)
T ss_dssp SCCCCCCE--ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEECCSSCC-----
T ss_pred cccCCCCC--CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC--cEEEEEecCccccC-----
Confidence 45566666 445777888888999 999999 99999999999999 777665532 48899998886530
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+ ++...+....+++.|+|.++|+++++|++|+++.+
T Consensus 97 -----~---~~~~~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~ 132 (154)
T 2ju5_A 97 -----Q---PEEQRQKNQELKAQYKVTGFPELVFIDAEGKQLAR 132 (154)
T ss_dssp -----C---CHHHHHHHHHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred -----C---ChhhHhhHHHHHHHcCCCCCCEEEEEcCCCCEEEE
Confidence 1 11112233578999999999999999999999874
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.2e-13 Score=110.47 Aligned_cols=72 Identities=24% Similarity=0.463 Sum_probs=64.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.++ ++++.|+|
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v 71 (106)
T 3die_A 18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDVDENP-----------------------STAAKYEV 71 (106)
T ss_dssp CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEECCcCH-----------------------HHHHhCCC
Confidence 5899999999999999999999999999999764 899999998775 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++ ++|+++.+.
T Consensus 72 ~~~Pt~~~~-~~G~~~~~~ 89 (106)
T 3die_A 72 MSIPTLIVF-KDGQPVDKV 89 (106)
T ss_dssp CSBSEEEEE-ETTEEEEEE
T ss_pred cccCEEEEE-eCCeEEEEE
Confidence 999999999 599988863
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-13 Score=113.11 Aligned_cols=73 Identities=23% Similarity=0.538 Sum_probs=61.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.+++++++.. ++.++.|++|..+ ++++.|+|
T Consensus 20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~-----------------------~~~~~~~v 74 (112)
T 3d6i_A 20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNS--NVSFLSIDADENS-----------------------EISELFEI 74 (112)
T ss_dssp TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGT--TSEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCC--CEEEEEEecccCH-----------------------HHHHHcCC
Confidence 3799999999999999999999999999887433 5899999988764 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++ ++|+++.+.
T Consensus 75 ~~~Pt~~~~-~~G~~~~~~ 92 (112)
T 3d6i_A 75 SAVPYFIII-HKGTILKEL 92 (112)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-ECCEEEEEe
Confidence 999999999 799998873
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=9.2e-13 Score=113.19 Aligned_cols=83 Identities=12% Similarity=0.202 Sum_probs=66.4
Q ss_pred eecCCCceeecCCC-CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcC---CCCEEEEEEeCCCCHHHHHHHHHhCCCcc
Q 008336 23 LIRSNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSR---QGDFEVIFVSGDEDDEAFKGYFSKMPWLA 97 (569)
Q Consensus 23 ~~~~~g~~v~l~~~-~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~---~g~~~vv~v~~d~~~~~~~~~~~~~~~~~ 97 (569)
+..++++.+...-. .++ ++|+|||+||++|+.+.|.+.++++.+.. .+++.++.|+++...
T Consensus 17 v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~-------------- 82 (127)
T 3h79_A 17 VVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYP-------------- 82 (127)
T ss_dssp CEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCH--------------
T ss_pred eEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccH--------------
Confidence 44556665543332 478 99999999999999999999999998752 236999999998764
Q ss_pred cccCCchhHHHHHHhcCCCCccEEEEECCCCc
Q 008336 98 VPFSDSETRDKLDELFKVMGIPHLVILDENGK 129 (569)
Q Consensus 98 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~ 129 (569)
.+++.|+|.++|++++++++++
T Consensus 83 ----------~l~~~~~v~~~Pt~~~~~~g~~ 104 (127)
T 3h79_A 83 ----------DVIERMRVSGFPTMRYYTRIDK 104 (127)
T ss_dssp ----------HHHHHTTCCSSSEEEEECSSCS
T ss_pred ----------hHHHhcCCccCCEEEEEeCCCC
Confidence 4899999999999999976654
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-13 Score=115.76 Aligned_cols=84 Identities=27% Similarity=0.500 Sum_probs=66.6
Q ss_pred cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCc
Q 008336 344 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 423 (569)
Q Consensus 344 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~ 423 (569)
..++..+...-..+|++||+||++||++|+++.|.|.+++++++++...+.++.|+++.+.
T Consensus 21 ~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------- 81 (140)
T 2dj1_A 21 VLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS------------------- 81 (140)
T ss_dssp ECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCH-------------------
T ss_pred EcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccH-------------------
Confidence 4445544433335899999999999999999999999999999865334777777766553
Q ss_pred hhhHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 424 ARKASLSRKFKVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 424 d~~~~l~~~~~v~~~Pt~~lid~~G~i~ 451 (569)
.+++.|+|.++||++++ ++|++.
T Consensus 82 ----~~~~~~~v~~~Pt~~~~-~~G~~~ 104 (140)
T 2dj1_A 82 ----MLASKFDVSGYPTIKIL-KKGQAV 104 (140)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred ----HHHHHCCCCccCeEEEE-ECCcEE
Confidence 58999999999999999 789843
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-13 Score=123.70 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=63.3
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 352 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 352 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
+++++|++++|+|||+|||||+.++|.|+++++.++ ++.++.|++|.++ ++++
T Consensus 49 l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~----~v~~~~v~~d~~~-----------------------~~~~ 101 (167)
T 1z6n_A 49 LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP----NIELAIISKGRAE-----------------------DDLR 101 (167)
T ss_dssp HHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT----TEEEEEECHHHHH-----------------------HHTT
T ss_pred HHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC----CcEEEEEECCCCH-----------------------HHHH
Confidence 456679999999999999999999999999988764 4888888776443 3556
Q ss_pred hcC---CCCccEEEEECCCCcEEEcc
Q 008336 432 KFK---VSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 432 ~~~---v~~~Pt~~lid~~G~i~~~~ 454 (569)
.|. ++++||++++|.+|+++.+.
T Consensus 102 ~~~~~~v~~iPt~i~~~~~G~~~~~~ 127 (167)
T 1z6n_A 102 QRLALERIAIPLVLVLDEEFNLLGRF 127 (167)
T ss_dssp TTTTCSSCCSSEEEEECTTCCEEEEE
T ss_pred HHHHcCCCCcCeEEEECCCCCEEEEE
Confidence 665 99999999999999998764
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-13 Score=111.78 Aligned_cols=72 Identities=28% Similarity=0.538 Sum_probs=63.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+|+++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.++ ++++.|+|
T Consensus 22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v 75 (112)
T 1t00_A 22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKLNIDENP-----------------------GTAAKYGV 75 (112)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCC---eEEEEEEcCCCH-----------------------HHHHhCCC
Confidence 3789999999999999999999999999998654 899999988764 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++||++++ ++|+++.+.
T Consensus 76 ~~~Pt~~~~-~~G~~~~~~ 93 (112)
T 1t00_A 76 MSIPTLNVY-QGGEVAKTI 93 (112)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-eCCEEEEEE
Confidence 999999988 799998763
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-13 Score=118.95 Aligned_cols=94 Identities=16% Similarity=0.342 Sum_probs=69.5
Q ss_pred eecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHH
Q 008336 350 VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 429 (569)
Q Consensus 350 v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l 429 (569)
-.+++.+||++||+||++||++|+.+.|.|+++++++ ++.++.|++|... ++
T Consensus 33 ~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-----~v~~~~vd~~~~~-----------------------~l 84 (133)
T 3cxg_A 33 QVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-----YVTLVDIDVDIHP-----------------------KL 84 (133)
T ss_dssp HHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-----ECEEEEEETTTCH-----------------------HH
T ss_pred HHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-----CEEEEEEeccchH-----------------------HH
Confidence 3455667899999999999999999999998876655 2677777777553 58
Q ss_pred HHhcCCCCccEEEEE-CCCCc--EEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhc
Q 008336 430 SRKFKVSGIPMLVAI-GPSGR--TITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 486 (569)
Q Consensus 430 ~~~~~v~~~Pt~~li-d~~G~--i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~ 486 (569)
++.|+|+++||++++ +++|+ ++.+.. | .. .++|.+.|++++.
T Consensus 85 ~~~~~v~~~Pt~~~~~~~~g~g~~~~~~~-------G-----~~---~~~l~~~l~~~l~ 129 (133)
T 3cxg_A 85 NDQHNIKALPTFEFYFNLNNEWVLVHTVE-------G-----AN---QNDIEKAFQKYCL 129 (133)
T ss_dssp HHHTTCCSSSEEEEEEEETTEEEEEEEEE-------S-----CC---HHHHHHHHHHHSE
T ss_pred HHhcCCCCCCEEEEEEecCCCeEEEEEEc-------C-----CC---HHHHHHHHHHHHH
Confidence 899999999999999 44666 777632 2 12 3456666766654
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.1e-13 Score=115.26 Aligned_cols=99 Identities=21% Similarity=0.355 Sum_probs=74.3
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHHH--HHHHHhcCCCCEEEEEEeC---CCCHHHHHHHHHhCCCcccccCCchh
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILA--EVYNELSRQGDFEVIFVSG---DEDDEAFKGYFSKMPWLAVPFSDSET 105 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~--~~~~~~~~~g~~~vv~v~~---d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (569)
..+...|| ++|+||++||++|+.+.|.|. ++.+.+.. ++.++.|++ +..
T Consensus 23 ~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~--~~~~~~vd~~~~~~~----------------------- 77 (133)
T 3fk8_A 23 AAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAK--HFEVVKIDVGNFDRN----------------------- 77 (133)
T ss_dssp HHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH--HCEEEEEECTTTTSS-----------------------
T ss_pred HHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC--CEEEEEEeCCcccch-----------------------
Confidence 33345689 999999999999999999999 99998864 489999999 433
Q ss_pred HHHHHHhcCC---CCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHH
Q 008336 106 RDKLDELFKV---MGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160 (569)
Q Consensus 106 ~~~l~~~~~v---~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (569)
..+++.|+| .++|+++++|++|+++.......+... ...+.+.+.++++.
T Consensus 78 -~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~----~~~~~~~l~~~l~~ 130 (133)
T 3fk8_A 78 -LELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANA----RKMSDQGIYDFFAK 130 (133)
T ss_dssp -HHHHHHTTCGGGGCSSEEEEECTTSCEEEECCSCTTTTG----GGSCHHHHHHHHHH
T ss_pred -HHHHHHhCCccCCccceEEEECCCCCEEEEecCCccccc----ccCCHHHHHHHHHH
Confidence 358899999 999999999999999876332111111 12355666666543
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.42 E-value=7e-13 Score=115.14 Aligned_cols=68 Identities=10% Similarity=0.273 Sum_probs=60.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ |+|+|||+|||+|+.+.|.|.++++++.+ .+.|+.|++|+.+ +++..|+|
T Consensus 40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~--~v~f~kVDVDe~~------------------------e~a~~y~V 93 (160)
T 2av4_A 40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKN--FCVIYLVDITEVP------------------------DFNTMYEL 93 (160)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCC------------------------TTTTTTTC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--CcEEEEEECCCCH------------------------HHHHHcCC
Confidence 456 99999999999999999999999999964 4889999999774 48899999
Q ss_pred CCccEEEEECCCCcEE
Q 008336 116 MGIPHLVILDENGKVL 131 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~ 131 (569)
+++||++++ ++|+.+
T Consensus 94 ~siPT~~fF-k~G~~v 108 (160)
T 2av4_A 94 YDPVSVMFF-YRNKHM 108 (160)
T ss_dssp CSSEEEEEE-ETTEEE
T ss_pred CCCCEEEEE-ECCEEE
Confidence 999999988 678776
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.9e-13 Score=111.06 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=62.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+++.|.|.+++++++ ++.++.|++|.++ ++++.|+|
T Consensus 20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~vd~~~~~-----------------------~~~~~~~v 72 (107)
T 1gh2_A 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP----QAVFLEVDVHQCQ-----------------------GTAATNNI 72 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC----CcEEEEEECccCH-----------------------HHHHhcCC
Confidence 47999999999999999999999999999883 4899999988764 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++ ++|+++.+.
T Consensus 73 ~~~Pt~~~~-~~G~~~~~~ 90 (107)
T 1gh2_A 73 SATPTFQFF-RNKVRIDQY 90 (107)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-ECCeEEEEE
Confidence 999999999 799988763
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.7e-13 Score=109.43 Aligned_cols=71 Identities=23% Similarity=0.556 Sum_probs=63.5
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.++ ++++.|+|.
T Consensus 19 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v~ 72 (107)
T 1dby_A 19 SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDESP-----------------------NVASEYGIR 72 (107)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHHTCC
T ss_pred CCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCH-----------------------HHHHHCCCC
Confidence 789999999999999999999999999998754 899999988764 488999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+++.+.
T Consensus 73 ~~Pt~~~~-~~G~~~~~~ 89 (107)
T 1dby_A 73 SIPTIMVF-KGGKKCETI 89 (107)
T ss_dssp SSCEEEEE-SSSSEEEEE
T ss_pred cCCEEEEE-eCCEEEEEE
Confidence 99999998 799998764
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.5e-13 Score=112.20 Aligned_cols=71 Identities=17% Similarity=0.381 Sum_probs=62.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|.++++++++ ++.++.|++|... .+++.|+|+
T Consensus 24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~-----------------------~~~~~~~v~ 77 (112)
T 1ep7_A 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG---KVIFLKVDVDAVA-----------------------AVAEAAGIT 77 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTTH-----------------------HHHHHHTCC
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC---CeEEEEEECCchH-----------------------HHHHHcCCC
Confidence 78999999999999999999999999998865 3899999988654 588999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+++.+.
T Consensus 78 ~~Pt~~~~-~~G~~~~~~ 94 (112)
T 1ep7_A 78 AMPTFHVY-KDGVKADDL 94 (112)
T ss_dssp BSSEEEEE-ETTEEEEEE
T ss_pred cccEEEEE-ECCeEEEEE
Confidence 99998888 899998763
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-13 Score=115.42 Aligned_cols=72 Identities=26% Similarity=0.531 Sum_probs=64.2
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|++++++++++ +.++.|++|.++ ++++.|+|
T Consensus 39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v 92 (128)
T 2o8v_B 39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK---LTVAKLNIDQNP-----------------------GTAPKYGI 92 (128)
T ss_dssp CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTT---EEEEEEETTTCC-----------------------TTSGGGTC
T ss_pred cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCCH-----------------------HHHHHcCC
Confidence 4799999999999999999999999999998754 899999988664 37889999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++||++++ ++|+++.+.
T Consensus 93 ~~~Pt~~~~-~~G~~~~~~ 110 (128)
T 2o8v_B 93 RGIPTLLLF-KNGEVAATK 110 (128)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CccCEEEEE-eCCEEEEEE
Confidence 999999999 899998763
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-13 Score=125.01 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=67.0
Q ss_pred eecccCCCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHH--HHhcCCCcccccCch
Q 008336 350 VPVSDLAGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDE--FFKGMPWLALPFGDA 424 (569)
Q Consensus 350 v~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~--~~~~~~~~~~~~~~d 424 (569)
+.++..+||+|||+|||+||++|+.+.+.+ .++.+.++++ +.++.|++|...+.... +.....+..+....+
T Consensus 40 ~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~---~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (172)
T 3f9u_A 40 MEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINND---YVLITLYVDNKTPLTEPVKIMENGTERTLRTVGD 116 (172)
T ss_dssp HHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHH---CEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCC---EEEEEEecCcccccchhhhhhhcchhhhhhhhhh
Confidence 344445699999999999999999975444 5555555544 89999999865421000 000011111222222
Q ss_pred hhHHH-HHhcCCCCccEEEEECCCCcEEEccc
Q 008336 425 RKASL-SRKFKVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 425 ~~~~l-~~~~~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
....+ .+.|+|.++||++|||++|+++.+..
T Consensus 117 ~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~ 148 (172)
T 3f9u_A 117 KWSYLQRVKFGANAQPFYVLIDNEGNPLNKSY 148 (172)
T ss_dssp HHHHHHHHHHSCCCSSEEEEECTTSCBSSCCB
T ss_pred hhhHHHHHHcCCCCcceEEEECCCCCEEeecc
Confidence 22333 58899999999999999999988743
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=115.18 Aligned_cols=71 Identities=11% Similarity=0.274 Sum_probs=63.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+|||+||++|+.+.|.|++++++++++ +.++.|++|.++ ++++.|+|+
T Consensus 23 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~-----------------------~~~~~~~i~ 76 (142)
T 1qgv_A 23 DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEVP-----------------------DFNKMYELY 76 (142)
T ss_dssp SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCC-----------------------TTTTSSCSC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEccccCH-----------------------HHHHHcCCC
Confidence 799999999999999999999999999998654 899999988664 378899999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ .+|+++...
T Consensus 77 ~~Pt~~~~-~~G~~v~~~ 93 (142)
T 1qgv_A 77 DPCTVMFF-FRNKHIMID 93 (142)
T ss_dssp SSCEEEEE-ETTEEEEEE
T ss_pred CCCEEEEE-ECCcEEEEe
Confidence 99999999 688888753
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-13 Score=113.32 Aligned_cols=72 Identities=24% Similarity=0.558 Sum_probs=64.0
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.++++||+||++||++|+++.|.|.+++++++++ +.++.|++|.+. ++++.|+|
T Consensus 30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~---v~~~~vd~d~~~-----------------------~l~~~~~v 83 (119)
T 1w4v_A 30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK---VVMAKVDIDDHT-----------------------DLAIEYEV 83 (119)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTS---SEEEEEETTTTH-----------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCCCCH-----------------------HHHHHcCC
Confidence 3789999999999999999999999999988654 899999988664 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++|+++++ ++|+++.+.
T Consensus 84 ~~~Pt~~~~-~~G~~~~~~ 101 (119)
T 1w4v_A 84 SAVPTVLAM-KNGDVVDKF 101 (119)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-eCCcEEEEE
Confidence 999999999 899998763
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.5e-13 Score=117.16 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=62.0
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++|||+|||+||++|+.+.|.|.+++++++++ +.++.|++|..+ ++++.|+|
T Consensus 22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~---~~~~~vd~d~~~-----------------------~l~~~~~v 75 (149)
T 3gix_A 22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM---AAIYLVDVDQTA-----------------------VYTQYFDI 75 (149)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT---EEEEEEETTTCC-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCcCH-----------------------HHHHHcCC
Confidence 3799999999999999999999999999988654 899999988665 48999999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 436 SGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~ 452 (569)
.++||++++ ++|+++.
T Consensus 76 ~~~Pt~~~~-~~G~~v~ 91 (149)
T 3gix_A 76 SYIPSTVFF-FNGQHMK 91 (149)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CccCeEEEE-ECCeEEE
Confidence 999999965 7899883
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.7e-13 Score=109.89 Aligned_cols=71 Identities=20% Similarity=0.342 Sum_probs=55.6
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.++++++. ++.++.|++|.++ ++++.|+|
T Consensus 17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~~~~~-----------------------~l~~~~~v 69 (105)
T 4euy_A 17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN----YVEKIEILLQDMQ-----------------------EIAGRYAV 69 (105)
T ss_dssp CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT----TEEEEEEEECCC--------------------------------
T ss_pred cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC----CceEEEEECCCCH-----------------------HHHHhcCC
Confidence 47999999999999999999999999998873 4899999988765 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++ ++|+++.+.
T Consensus 70 ~~~Pt~~~~-~~G~~~~~~ 87 (105)
T 4euy_A 70 FTGPTVLLF-YNGKEILRE 87 (105)
T ss_dssp CCCCEEEEE-ETTEEEEEE
T ss_pred CCCCEEEEE-eCCeEEEEE
Confidence 999999999 599998774
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=115.17 Aligned_cols=90 Identities=27% Similarity=0.532 Sum_probs=74.9
Q ss_pred cCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhC
Q 008336 16 SSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (569)
Q Consensus 16 g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~ 93 (569)
|.++++. +.+++++.+......++ ++|+||++||++|+.+.|.|.++++++.. ++.++.|+++.+.
T Consensus 32 ~~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~--~~~~~~vd~~~~~---------- 99 (148)
T 3p2a_A 32 GHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG--KVRFVKVNTEAEP---------- 99 (148)
T ss_dssp CCBTTCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH----------
T ss_pred CCccccCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC--ceEEEEEECcCCH----------
Confidence 5566666 55667776665556788 99999999999999999999999999864 4899999998764
Q ss_pred CCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 94 PWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|+|.++|+++++ ++|+++.
T Consensus 100 --------------~l~~~~~v~~~Pt~~~~-~~G~~~~ 123 (148)
T 3p2a_A 100 --------------ALSTRFRIRSIPTIMLY-RNGKMID 123 (148)
T ss_dssp --------------HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred --------------HHHHHCCCCccCEEEEE-ECCeEEE
Confidence 48899999999999999 6888775
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-12 Score=110.83 Aligned_cols=72 Identities=13% Similarity=0.232 Sum_probs=61.0
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhc--CCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER--NESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
.+++++|+||++||++|+.+.|.|.++++.+..+ ..++.++.|++|..+ ++++.|
T Consensus 32 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~-----------------------~l~~~~ 88 (127)
T 3h79_A 32 PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYP-----------------------DVIERM 88 (127)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCH-----------------------HHHHHT
T ss_pred CCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccH-----------------------hHHHhc
Confidence 3799999999999999999999999999988632 235888888887664 589999
Q ss_pred CCCCccEEEEECCCCcE
Q 008336 434 KVSGIPMLVAIGPSGRT 450 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i 450 (569)
+|+++||++++++++++
T Consensus 89 ~v~~~Pt~~~~~~g~~~ 105 (127)
T 3h79_A 89 RVSGFPTMRYYTRIDKQ 105 (127)
T ss_dssp TCCSSSEEEEECSSCSS
T ss_pred CCccCCEEEEEeCCCCC
Confidence 99999999999766653
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=114.16 Aligned_cols=70 Identities=29% Similarity=0.572 Sum_probs=62.4
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.+++++++. ++.++.|+++.+. .+++.|+|
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~v 90 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDG--QIVIYKVDTEKEQ------------------------ELAGAFGI 90 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC--CEEEEEEeCCCCH------------------------HHHHHcCC
Confidence 467 99999999999999999999999999864 4899999998763 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++|++|+++.
T Consensus 91 ~~~Pt~~~~~~~G~~~~ 107 (136)
T 2l5l_A 91 RSIPSILFIPMEGKPEM 107 (136)
T ss_dssp CSSCEEEEECSSSCCEE
T ss_pred CCCCEEEEECCCCcEEE
Confidence 99999999999998763
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-13 Score=110.29 Aligned_cols=71 Identities=21% Similarity=0.442 Sum_probs=63.0
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
++++++|+||++||++|+.+.|.+.+++++++ ++.++.|+.|..+ ++++.|+|
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~vd~~~~~-----------------------~~~~~~~v 71 (105)
T 3m9j_A 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS----NVIFLEVDVDDCQ-----------------------DVASESEV 71 (105)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHST----TSEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHHcc----CeEEEEEEhhhhH-----------------------HHHHHcCC
Confidence 48999999999999999999999999998875 3888999888664 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++ ++|+++.+.
T Consensus 72 ~~~Pt~~~~-~~g~~~~~~ 89 (105)
T 3m9j_A 72 KSMPTFQFF-KKGQKVGEF 89 (105)
T ss_dssp CBSSEEEEE-ETTEEEEEE
T ss_pred CcCcEEEEE-ECCeEEEEE
Confidence 999999999 789988773
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-14 Score=129.34 Aligned_cols=111 Identities=15% Similarity=0.367 Sum_probs=75.8
Q ss_pred eecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHH
Q 008336 350 VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 429 (569)
Q Consensus 350 v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l 429 (569)
+.....+||+|||+||++||++|+.+.|.|.++.+.+... +.++.|++|.+.+ .+
T Consensus 39 ~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~---~~~~~v~~d~~~~----------------------~~ 93 (164)
T 1sen_A 39 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS---HNFVMVNLEDEEE----------------------PK 93 (164)
T ss_dssp HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH---TTSEEEEEEGGGS----------------------CS
T ss_pred HHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC---CeEEEEEecCCch----------------------HH
Confidence 3334445899999999999999999999999977666543 6677888775432 13
Q ss_pred HHhcCC--CCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 008336 430 SRKFKV--SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 489 (569)
Q Consensus 430 ~~~~~v--~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~ 489 (569)
+..|++ .++||++++|++|+++.+..+. .+...|.+.....++|.+.|++++....
T Consensus 94 ~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G~----~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 151 (164)
T 1sen_A 94 DEDFSPDGGYIPRILFLDPSGKVHPEIINE----NGNPSYKYFYVSAEQVVQGMKEAQERLT 151 (164)
T ss_dssp CGGGCTTCSCSSEEEEECTTSCBCTTCCCT----TSCTTSTTCCCSHHHHHHHHHHHHHHHG
T ss_pred HHHhcccCCcCCeEEEECCCCCEEEEEeCC----CCccchhcccCCHHHHHHHHHHHHHhcc
Confidence 456777 6699999999999998764321 1222222333445666666666654433
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.6e-13 Score=117.73 Aligned_cols=89 Identities=18% Similarity=0.380 Sum_probs=72.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
+++++||+||++||++|+++.|.|.+++++++ ++.++.|++|..+ .+++.|+|
T Consensus 31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~~~~~-----------------------~l~~~~~v 83 (153)
T 2wz9_A 31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP----QVSFVKLEAEGVP-----------------------EVSEKYEI 83 (153)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSH-----------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC----CeEEEEEECCCCH-----------------------HHHHHcCC
Confidence 48999999999999999999999999998873 4899999988764 48899999
Q ss_pred CCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcC
Q 008336 436 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 487 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~ 487 (569)
+++|++++++ +|+++.+.. | ... ++|.+.|++++..
T Consensus 84 ~~~Pt~~~~~-~G~~~~~~~-------G-----~~~---~~l~~~i~~~l~~ 119 (153)
T 2wz9_A 84 SSVPTFLFFK-NSQKIDRLD-------G-----AHA---PELTKKVQRHASS 119 (153)
T ss_dssp CSSSEEEEEE-TTEEEEEEE-------S-----SCH---HHHHHHHHHHSCT
T ss_pred CCCCEEEEEE-CCEEEEEEe-------C-----CCH---HHHHHHHHHHhcc
Confidence 9999999998 999987632 2 122 3466667776654
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=108.51 Aligned_cols=72 Identities=25% Similarity=0.619 Sum_probs=63.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
++++++|+||++||++|+.+.|.|++++++++. ++.++.|++|.++ .+++.|++
T Consensus 19 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~~~-----------------------~~~~~~~v 72 (106)
T 1xwb_A 19 SGKLVVLDFFATWCGPCKMISPKLVELSTQFAD---NVVVLKVDVDECE-----------------------DIAMEYNI 72 (106)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TEEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC---CeEEEEEeccchH-----------------------HHHHHcCC
Confidence 489999999999999999999999999998864 4899999988664 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++||++++ ++|+++.+.
T Consensus 73 ~~~Pt~~~~-~~G~~~~~~ 90 (106)
T 1xwb_A 73 SSMPTFVFL-KNGVKVEEF 90 (106)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-cCCcEEEEE
Confidence 999998888 789988763
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.4e-13 Score=113.80 Aligned_cols=72 Identities=25% Similarity=0.499 Sum_probs=62.7
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+++.|.|.++++++++. +.++.|++|... .+++.|+|
T Consensus 34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~l~~~~~v 87 (130)
T 2dml_A 34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV---VKVGAVNADKHQ-----------------------SLGGQYGV 87 (130)
T ss_dssp CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT---SEEEEEETTTCH-----------------------HHHHHHTC
T ss_pred CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc---eEEEEEeCCCCH-----------------------HHHHHcCC
Confidence 3789999999999999999999999999998754 888999888664 48899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 436 SGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~ 453 (569)
+++||+++++++|+++.+
T Consensus 88 ~~~Pt~~~~~~~~~~~~~ 105 (130)
T 2dml_A 88 QGFPTIKIFGANKNKPED 105 (130)
T ss_dssp CSSSEEEEESSCTTSCEE
T ss_pred CccCEEEEEeCCCCeEEE
Confidence 999999999988874443
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-13 Score=122.12 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=62.4
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
.+++++|+ ++|+|||+|||+|+.++|.|.++++.++ ++.++.|++|.++ .+.
T Consensus 48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~---~v~~~~v~~d~~~------------------------~~~ 100 (167)
T 1z6n_A 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAE------------------------DDL 100 (167)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT---TEEEEEECHHHHH------------------------HHT
T ss_pred HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CcEEEEEECCCCH------------------------HHH
Confidence 45678899 9999999999999999999999998764 4889988877443 355
Q ss_pred HhcC---CCCccEEEEECCCCcEEEc
Q 008336 111 ELFK---VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 111 ~~~~---v~~~P~~~lid~~G~i~~~ 133 (569)
..|. +.++||++++|.+|+++..
T Consensus 101 ~~~~~~~v~~iPt~i~~~~~G~~~~~ 126 (167)
T 1z6n_A 101 RQRLALERIAIPLVLVLDEEFNLLGR 126 (167)
T ss_dssp TTTTTCSSCCSSEEEEECTTCCEEEE
T ss_pred HHHHHcCCCCcCeEEEECCCCCEEEE
Confidence 5565 9999999999998888764
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=110.17 Aligned_cols=72 Identities=31% Similarity=0.621 Sum_probs=64.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.++ ++++.|+|
T Consensus 24 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~~-----------------------~~~~~~~v 77 (115)
T 1thx_A 24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPNP-----------------------TTVKKYKV 77 (115)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTCH-----------------------HHHHHTTC
T ss_pred CCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc---EEEEEEEcCCCH-----------------------HHHHHcCC
Confidence 4789999999999999999999999999998754 899999988764 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++|+++++ ++|+++.+.
T Consensus 78 ~~~Pt~~~~-~~G~~~~~~ 95 (115)
T 1thx_A 78 EGVPALRLV-KGEQILDST 95 (115)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CceeEEEEE-cCCEEEEEe
Confidence 999999999 899998863
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-12 Score=110.59 Aligned_cols=68 Identities=18% Similarity=0.420 Sum_probs=59.8
Q ss_pred CEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCC
Q 008336 358 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 437 (569)
Q Consensus 358 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~ 437 (569)
+.++|+||++||++|+++.|.|.++++++++. ++.++.|++|.+. .+++.|+|++
T Consensus 23 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~--~v~~~~vd~~~~~-----------------------~~~~~~~v~~ 77 (126)
T 1x5e_A 23 GDWMIEFYAPWCPACQNLQPEWESFAEWGEDL--EVNIAKVDVTEQP-----------------------GLSGRFIINA 77 (126)
T ss_dssp SEEEEEEECSSCHHHHHHHHHHHHHHHHHGGG--TCEEEEEETTTCH-----------------------HHHHHTTCCS
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECcCCH-----------------------HHHHHcCCcc
Confidence 35999999999999999999999999998753 4899999888664 4889999999
Q ss_pred ccEEEEECCCCcEE
Q 008336 438 IPMLVAIGPSGRTI 451 (569)
Q Consensus 438 ~Pt~~lid~~G~i~ 451 (569)
+||++++ ++|++.
T Consensus 78 ~Pt~~~~-~~G~~~ 90 (126)
T 1x5e_A 78 LPTIYHC-KDGEFR 90 (126)
T ss_dssp SSEEEEE-ETTEEE
T ss_pred cCEEEEE-eCCeEE
Confidence 9999999 899863
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=8.8e-13 Score=112.98 Aligned_cols=70 Identities=17% Similarity=0.459 Sum_probs=62.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.++++||+||++||++|+.+.|.|.+++++++ ++.++.|++|... ++++.|+|
T Consensus 36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~-----------------------~l~~~~~v 88 (125)
T 1r26_A 36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDADNNS-----------------------EIVSKCRV 88 (125)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC----CCEEEEEECCCCH-----------------------HHHHHcCC
Confidence 47899999999999999999999999998883 4899999988664 48899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 436 SGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~ 453 (569)
.++||++++ ++|+++.+
T Consensus 89 ~~~Pt~~i~-~~G~~~~~ 105 (125)
T 1r26_A 89 LQLPTFIIA-RSGKMLGH 105 (125)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-eCCeEEEE
Confidence 999999888 89999876
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=116.92 Aligned_cols=72 Identities=22% Similarity=0.585 Sum_probs=64.6
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.++++||+||++||++|+.+.|.|++++++++++ +.++.|++|.++ ++++.|+|
T Consensus 63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~i 116 (155)
T 2ppt_A 63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKIDTQAHP-----------------------AVAGRHRI 116 (155)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTST-----------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC---EEEEEEeCCccH-----------------------HHHHHcCC
Confidence 4789999999999999999999999999999754 899999988664 48999999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++ ++|+++.+.
T Consensus 117 ~~~Pt~~~~-~~G~~~~~~ 134 (155)
T 2ppt_A 117 QGIPAFILF-HKGRELARA 134 (155)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcCCEEEEE-eCCeEEEEe
Confidence 999999999 799998763
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-12 Score=105.99 Aligned_cols=72 Identities=28% Similarity=0.565 Sum_probs=64.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.+++++++++ +.++.|+++.++ .+++.|+|
T Consensus 19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v 72 (107)
T 2i4a_A 19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK---VTVAKVNIDDNP-----------------------ETPNAYQV 72 (107)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTS---EEEEEEETTTCC-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCc---EEEEEEECCCCH-----------------------HHHHhcCC
Confidence 4789999999999999999999999999998754 899999988664 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++|+++++ ++|+++.+.
T Consensus 73 ~~~Pt~~~~-~~G~~~~~~ 90 (107)
T 2i4a_A 73 RSIPTLMLV-RDGKVIDKK 90 (107)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CccCEEEEE-eCCEEEEEe
Confidence 999999999 899998763
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6.1e-13 Score=112.48 Aligned_cols=72 Identities=25% Similarity=0.552 Sum_probs=62.3
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
+.++++++|+||++||++|+++.|.|+++++++ ++.++.|++|... ++++.|
T Consensus 30 ~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-----~~~~~~vd~~~~~-----------------------~~~~~~ 81 (117)
T 2xc2_A 30 QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-----DAIFVKVDVDKLE-----------------------ETARKY 81 (117)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-----SSEEEEEETTTSH-----------------------HHHHHT
T ss_pred hCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-----CcEEEEEECCccH-----------------------HHHHHc
Confidence 345899999999999999999999999988776 3888999888654 488999
Q ss_pred CCCCccEEEEECCCCcEEEcc
Q 008336 434 KVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+|+++||++++ ++|+++.+.
T Consensus 82 ~v~~~Pt~~~~-~~G~~~~~~ 101 (117)
T 2xc2_A 82 NISAMPTFIAI-KNGEKVGDV 101 (117)
T ss_dssp TCCSSSEEEEE-ETTEEEEEE
T ss_pred CCCccceEEEE-eCCcEEEEE
Confidence 99999998888 799998763
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-13 Score=114.09 Aligned_cols=67 Identities=18% Similarity=0.321 Sum_probs=60.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|.+++++++++ +.++.|+++..+ ++++.|+|+
T Consensus 21 ~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~ 74 (122)
T 3aps_A 21 KTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK---VRAGKVDCQAYP-----------------------QTCQKAGIK 74 (122)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCcCCH-----------------------HHHHHcCCC
Confidence 789999999999999999999999999998754 899999988764 488999999
Q ss_pred CccEEEEECCCCc
Q 008336 437 GIPMLVAIGPSGR 449 (569)
Q Consensus 437 ~~Pt~~lid~~G~ 449 (569)
++||+++++++|+
T Consensus 75 ~~Pt~~~~~~~~~ 87 (122)
T 3aps_A 75 AYPSVKLYQYERA 87 (122)
T ss_dssp SSSEEEEEEEEGG
T ss_pred ccceEEEEeCCCc
Confidence 9999999987776
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-12 Score=109.85 Aligned_cols=74 Identities=19% Similarity=0.486 Sum_probs=62.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhc-CCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
.++++||+||++||++|+.+.|.|.+++++++.. ..++.++.|+++.+. .+++.|+
T Consensus 24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------------------~l~~~~~ 80 (133)
T 1x5d_A 24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQ-----------------------VLASRYG 80 (133)
T ss_dssp SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCC-----------------------HHHHHHT
T ss_pred CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCH-----------------------HHHHhCC
Confidence 3789999999999999999999999999999731 124888888887654 5889999
Q ss_pred CCCccEEEEECCCCcEEEc
Q 008336 435 VSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~~ 453 (569)
|+++||++++++ |+++.+
T Consensus 81 v~~~Pt~~~~~~-g~~~~~ 98 (133)
T 1x5d_A 81 IRGFPTIKIFQK-GESPVD 98 (133)
T ss_dssp CCSSSEEEEEET-TEEEEE
T ss_pred CCeeCeEEEEeC-CCceEE
Confidence 999999999976 877665
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=107.05 Aligned_cols=71 Identities=23% Similarity=0.488 Sum_probs=63.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|..+ .+++.|+|.
T Consensus 22 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v~ 75 (111)
T 3gnj_A 22 GKACLVMFSRKNCHVCQKVTPVLEELRLNYEES---FGFYYVDVEEEK-----------------------TLFQRFSLK 75 (111)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCcCh-----------------------hHHHhcCCC
Confidence 789999999999999999999999999998754 899999998765 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+++.+.
T Consensus 76 ~~Pt~~~~-~~g~~~~~~ 92 (111)
T 3gnj_A 76 GVPQILYF-KDGEYKGKM 92 (111)
T ss_dssp SSCEEEEE-ETTEEEEEE
T ss_pred cCCEEEEE-ECCEEEEEE
Confidence 99999999 789988763
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=112.25 Aligned_cols=85 Identities=24% Similarity=0.447 Sum_probs=68.2
Q ss_pred eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCccccc
Q 008336 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPF 100 (569)
Q Consensus 23 ~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 100 (569)
+..++++.+...-..++ +||+||++||++|+.+.|.|.++++++...+ ++.++.|+++.+.
T Consensus 19 v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----------------- 81 (140)
T 2dj1_A 19 VWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS----------------- 81 (140)
T ss_dssp EEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCH-----------------
T ss_pred CEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccH-----------------
Confidence 34456665554334678 9999999999999999999999999998653 4888888887653
Q ss_pred CCchhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 101 SDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 101 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|+|.++|+++++ ++|++..
T Consensus 82 -------~~~~~~~v~~~Pt~~~~-~~G~~~~ 105 (140)
T 2dj1_A 82 -------MLASKFDVSGYPTIKIL-KKGQAVD 105 (140)
T ss_dssp -------HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred -------HHHHHCCCCccCeEEEE-ECCcEEE
Confidence 48899999999999999 7787443
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=109.02 Aligned_cols=78 Identities=22% Similarity=0.503 Sum_probs=64.6
Q ss_pred CCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchh
Q 008336 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSET 105 (569)
Q Consensus 27 ~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (569)
+++.+...-.++| ++|+||++||++|+.+.|.|.+++++++ ++.++.|+++...
T Consensus 13 ~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~---~~~~~~vd~~~~~---------------------- 67 (109)
T 3f3q_A 13 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP---QADFYKLDVDELG---------------------- 67 (109)
T ss_dssp SHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCH----------------------
T ss_pred CHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC---CCEEEEEECCCCH----------------------
Confidence 3334443334588 9999999999999999999999999985 3889999998764
Q ss_pred HHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 106 RDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 106 ~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|+|.++|++++++ +|+++.
T Consensus 68 --~l~~~~~v~~~Pt~~~~~-~G~~~~ 91 (109)
T 3f3q_A 68 --DVAQKNEVSAMPTLLLFK-NGKEVA 91 (109)
T ss_dssp --HHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred --HHHHHcCCCccCEEEEEE-CCEEEE
Confidence 488999999999999996 888775
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=112.09 Aligned_cols=73 Identities=15% Similarity=0.438 Sum_probs=61.5
Q ss_pred CCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 355 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 355 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
.++|+++|+||++||++|+++.|.+.+++++++ ++.++.|+++.. ..++++.|+
T Consensus 35 ~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~----~~~~~~vd~~~~----------------------~~~~~~~~~ 88 (124)
T 1faa_A 35 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL----DVIFLKLDCNQE----------------------NKTLAKELG 88 (124)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSST----------------------THHHHHHHC
T ss_pred cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC----CCEEEEEecCcc----------------------hHHHHHHcC
Confidence 358999999999999999999999999988875 378888888732 135889999
Q ss_pred CCCccEEEEECCCCcEEEcc
Q 008336 435 VSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~~~ 454 (569)
|+++||++++ ++|+++.+.
T Consensus 89 v~~~Pt~~~~-~~G~~~~~~ 107 (124)
T 1faa_A 89 IRVVPTFKIL-KENSVVGEV 107 (124)
T ss_dssp CSSSSEEEEE-ETTEEEEEE
T ss_pred CCeeeEEEEE-eCCcEEEEE
Confidence 9999997766 899998773
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-12 Score=109.47 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=65.4
Q ss_pred eecCCCceeecCCCCCcEEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCC
Q 008336 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (569)
Q Consensus 23 ~~~~~g~~v~l~~~~gkvlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (569)
+..++.+.+.. .++++++|+|||+||++|+.+.|.|.++++++.+. ++.++.|+++.+.
T Consensus 9 v~~l~~~~f~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-~v~~~~vd~~~~~------------------- 67 (126)
T 1x5e_A 9 VRVITDENWRE-LLEGDWMIEFYAPWCPACQNLQPEWESFAEWGEDL-EVNIAKVDVTEQP------------------- 67 (126)
T ss_dssp EEECCTTTHHH-HTSSEEEEEEECSSCHHHHHHHHHHHHHHHHHGGG-TCEEEEEETTTCH-------------------
T ss_pred cEEecHHHHHH-HhCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECcCCH-------------------
Confidence 33444444431 22333999999999999999999999999998754 4899999998763
Q ss_pred chhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 103 SETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|+|.++|+++++ ++|++..
T Consensus 68 -----~~~~~~~v~~~Pt~~~~-~~G~~~~ 91 (126)
T 1x5e_A 68 -----GLSGRFIINALPTIYHC-KDGEFRR 91 (126)
T ss_dssp -----HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred -----HHHHHcCCcccCEEEEE-eCCeEEE
Confidence 48899999999999999 8898643
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=110.37 Aligned_cols=71 Identities=25% Similarity=0.557 Sum_probs=62.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.++ ++++.|+|
T Consensus 33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~vd~~~~~-----------------------~~~~~~~v 85 (122)
T 2vlu_A 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFP----NAVFLKVDVDELK-----------------------PIAEQFSV 85 (122)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CcEEEEEECCCCH-----------------------HHHHHcCC
Confidence 37899999999999999999999999988875 3788999888764 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++ ++|+++.+.
T Consensus 86 ~~~Pt~~~~-~~G~~~~~~ 103 (122)
T 2vlu_A 86 EAMPTFLFM-KEGDVKDRV 103 (122)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-eCCEEEEEE
Confidence 999999888 899998763
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=109.45 Aligned_cols=70 Identities=23% Similarity=0.515 Sum_probs=62.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
||+++|+||++||++|+++.|.|.+++++++ ++.++.|++|.++ ++++.|+|+
T Consensus 30 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~----~v~~~~vd~~~~~-----------------------~l~~~~~v~ 82 (114)
T 2oe3_A 30 NDKLVIDFYATWCGPCKMMQPHLTKLIQAYP----DVRFVKCDVDESP-----------------------DIAKECEVT 82 (114)
T ss_dssp CSEEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CCEEEEEECCCCH-----------------------HHHHHCCCC
Confidence 7999999999999999999999999988875 3788999888664 488999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+++.+.
T Consensus 83 ~~Pt~~~~-~~G~~~~~~ 99 (114)
T 2oe3_A 83 AMPTFVLG-KDGQLIGKI 99 (114)
T ss_dssp SBSEEEEE-ETTEEEEEE
T ss_pred cccEEEEE-eCCeEEEEE
Confidence 99999988 899998763
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.5e-13 Score=115.03 Aligned_cols=83 Identities=22% Similarity=0.444 Sum_probs=65.6
Q ss_pred eecCCCceeecCCC-CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCccccc
Q 008336 23 LIRSNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPF 100 (569)
Q Consensus 23 ~~~~~g~~v~l~~~-~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 100 (569)
+..++++.+...-. .++ ++|+|||+||++|+.+.|.|.+++++++..+++.++.|+++...
T Consensus 9 v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~----------------- 71 (133)
T 2dj3_A 9 VKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAND----------------- 71 (133)
T ss_dssp SEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSC-----------------
T ss_pred eEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCH-----------------
Confidence 34455655554433 478 99999999999999999999999999986446888888887542
Q ss_pred CCchhHHHHHHhcCCCCccEEEEECCCCc
Q 008336 101 SDSETRDKLDELFKVMGIPHLVILDENGK 129 (569)
Q Consensus 101 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~ 129 (569)
.+++.|+|.++|++++++.+|+
T Consensus 72 -------~~~~~~~v~~~Pt~~~~~~g~~ 93 (133)
T 2dj3_A 72 -------ITNDQYKVEGFPTIYFAPSGDK 93 (133)
T ss_dssp -------CCCSSCCCSSSSEEEEECTTCT
T ss_pred -------HHHhhcCCCcCCEEEEEeCCCc
Confidence 3567899999999999987664
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=106.82 Aligned_cols=71 Identities=30% Similarity=0.647 Sum_probs=62.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.+++++++ ++.++.|++|..+ ++++.|++
T Consensus 18 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~-----------------------~~~~~~~v 70 (104)
T 2vim_A 18 KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP----EVEFAKVDVDQNE-----------------------EAAAKYSV 70 (104)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC----CCEEEEEeccCCH-----------------------HHHHHcCC
Confidence 48999999999999999999999999988875 4899999988664 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++|+++++ ++|+++.+.
T Consensus 71 ~~~Pt~~~~-~~g~~~~~~ 88 (104)
T 2vim_A 71 TAMPTFVFI-KDGKEVDRF 88 (104)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred ccccEEEEE-eCCcEEEEE
Confidence 999999888 589988773
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-12 Score=106.85 Aligned_cols=71 Identities=25% Similarity=0.544 Sum_probs=63.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.++ .+++.|++.
T Consensus 18 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v~ 71 (109)
T 2yzu_A 18 HPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK---LLVAKLDVDENP-----------------------KTAMRYRVM 71 (109)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCc---eEEEEEECCCCH-----------------------hHHHhCCCC
Confidence 789999999999999999999999999998754 899999988764 488999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++|+++++ ++|+++.+.
T Consensus 72 ~~Pt~~~~-~~g~~~~~~ 88 (109)
T 2yzu_A 72 SIPTVILF-KDGQPVEVL 88 (109)
T ss_dssp SSSEEEEE-ETTEEEEEE
T ss_pred cCCEEEEE-eCCcEeeeE
Confidence 99999999 899988763
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-12 Score=113.83 Aligned_cols=71 Identities=21% Similarity=0.343 Sum_probs=64.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
++++||+||++||++|+.+.|.|.+++++++++ +.++.|++|..+ .+++.|+|+
T Consensus 24 ~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v~ 77 (140)
T 3hz4_A 24 KKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRINIATNP-----------------------WTAEKYGVQ 77 (140)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTCH-----------------------HHHHHHTCC
T ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCcCH-----------------------hHHHHCCCC
Confidence 789999999999999999999999999999764 899999988765 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+++.+.
T Consensus 78 ~~Pt~~~~-~~G~~~~~~ 94 (140)
T 3hz4_A 78 GTPTFKFF-CHGRPVWEQ 94 (140)
T ss_dssp EESEEEEE-ETTEEEEEE
T ss_pred cCCEEEEE-eCCcEEEEE
Confidence 99999999 789988763
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.8e-14 Score=120.78 Aligned_cols=83 Identities=22% Similarity=0.518 Sum_probs=66.4
Q ss_pred CCceecccCCCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCc
Q 008336 347 GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 423 (569)
Q Consensus 347 g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~ 423 (569)
.+.+.+....||++||+||++||++|+.+.|.+ .++.+.++.+ +.++.|+++.+.
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~------------------- 66 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR---FVVASVSVDTPE------------------- 66 (130)
Confidence 455666666799999999999999999999999 8888777643 777777765332
Q ss_pred hhhHHHHHhcCCCCccEEEEECC-CCcE--EEc
Q 008336 424 ARKASLSRKFKVSGIPMLVAIGP-SGRT--ITK 453 (569)
Q Consensus 424 d~~~~l~~~~~v~~~Pt~~lid~-~G~i--~~~ 453 (569)
...+++.|+|.++||++++|+ +|++ +.+
T Consensus 67 --~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~ 97 (130)
T 2lst_A 67 --GQELARRYRVPGTPTFVFLVPKAGAWEEVGR 97 (130)
Confidence 235889999999999999996 5888 665
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=108.14 Aligned_cols=70 Identities=17% Similarity=0.456 Sum_probs=61.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|+++|+||++||++|+++.|.|.+++++++ ++.++.|+++..+ .+++.|+|.
T Consensus 26 ~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~----~v~~~~vd~~~~~-----------------------~~~~~~~v~ 78 (112)
T 1syr_A 26 NELVIVDFFAEWCGPCKRIAPFYEECSKTYT----KMVFIKVDVDEVS-----------------------EVTEKENIT 78 (112)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTTH-----------------------HHHHHTTCC
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcC----CCEEEEEECCCCH-----------------------HHHHHcCCC
Confidence 8999999999999999999999999988875 3899999888664 488999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+++.+.
T Consensus 79 ~~Pt~~~~-~~G~~~~~~ 95 (112)
T 1syr_A 79 SMPTFKVY-KNGSSVDTL 95 (112)
T ss_dssp SSSEEEEE-ETTEEEEEE
T ss_pred cccEEEEE-ECCcEEEEE
Confidence 99998888 699998763
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-12 Score=111.86 Aligned_cols=72 Identities=18% Similarity=0.449 Sum_probs=63.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.+++++++++ ++.++.|++|..+ ++++.|+|
T Consensus 32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~--~v~~~~vd~d~~~-----------------------~~~~~~~v 86 (121)
T 2j23_A 32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD--KVGFYKVDVDEQS-----------------------QIAQEVGI 86 (121)
T ss_dssp SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH--HSEEEEEETTTCH-----------------------HHHHHHTC
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC--cEEEEEEECcCCH-----------------------HHHHHcCC
Confidence 4789999999999999999999999999888764 4889999988764 48899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 436 SGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~ 453 (569)
.++||++++ ++|+++.+
T Consensus 87 ~~~Pt~~~~-~~G~~~~~ 103 (121)
T 2j23_A 87 RAMPTFVFF-KNGQKIDT 103 (121)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-ECCeEEee
Confidence 999999999 69999877
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=110.71 Aligned_cols=71 Identities=21% Similarity=0.399 Sum_probs=62.6
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
++++||+||++||++|+.+.|.|.++++++ . ++.++.|++|.+. ++++.|+|.
T Consensus 23 ~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~---~v~~~~vd~~~~~-----------------------~~~~~~~i~ 75 (118)
T 2f51_A 23 PGLVLVDFFATWCGPCQRLGQILPSIAEAN-K---DVTFIKVDVDKNG-----------------------NAADAYGVS 75 (118)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T---TSEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C---CeEEEEEECCCCH-----------------------HHHHhcCCC
Confidence 789999999999999999999999999888 3 4899999988764 488999999
Q ss_pred CccEEEEECC---CCcEEEcc
Q 008336 437 GIPMLVAIGP---SGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~---~G~i~~~~ 454 (569)
++||+++++. +|+++.+.
T Consensus 76 ~~Pt~~~~~~~~~~G~~~~~~ 96 (118)
T 2f51_A 76 SIPALFFVKKEGNEIKTLDQF 96 (118)
T ss_dssp SSSEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEeCCCCcceEEEee
Confidence 9999999965 38888873
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.35 E-value=5.3e-12 Score=104.09 Aligned_cols=72 Identities=18% Similarity=0.487 Sum_probs=63.7
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.++ .+++.|+|
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v 70 (105)
T 1fb6_A 17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEAP-----------------------GIATQYNI 70 (105)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc---eEEEEEcCcchH-----------------------HHHHhCCC
Confidence 3789999999999999999999999999998754 889999888664 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++||++++ ++|+++.+.
T Consensus 71 ~~~Pt~~~~-~~g~~~~~~ 88 (105)
T 1fb6_A 71 RSIPTVLFF-KNGERKESI 88 (105)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-eCCeEEEEE
Confidence 999999888 799998764
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-12 Score=108.49 Aligned_cols=70 Identities=21% Similarity=0.475 Sum_probs=61.5
Q ss_pred CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 35 ~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
+.+++ ++|+|||+||++|+.+.|.|.+++++++ ++.++.|++|... .+++.|
T Consensus 28 ~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~------------------------~l~~~~ 80 (116)
T 3qfa_C 28 AAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQ------------------------DVASEC 80 (116)
T ss_dssp HHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT---TSEEEEEETTTTH------------------------HHHHHT
T ss_pred hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEECCCCH------------------------HHHHHc
Confidence 34688 9999999999999999999999999875 3889999998763 488999
Q ss_pred CCCCccEEEEECCCCcEEE
Q 008336 114 KVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 114 ~v~~~P~~~lid~~G~i~~ 132 (569)
+|.++|+++++ ++|+++.
T Consensus 81 ~v~~~Pt~~~~-~~G~~~~ 98 (116)
T 3qfa_C 81 EVKSMPTFQFF-KKGQKVG 98 (116)
T ss_dssp TCCSSSEEEEE-SSSSEEE
T ss_pred CCccccEEEEE-eCCeEEE
Confidence 99999999999 7888775
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=112.59 Aligned_cols=83 Identities=20% Similarity=0.381 Sum_probs=63.1
Q ss_pred cCCCCceecccC-CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccC
Q 008336 344 GKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 422 (569)
Q Consensus 344 ~~~g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~ 422 (569)
..++..+..... .+++++|+||++||++|+.+.|.|.+++++++.+ .++.++.|+++...
T Consensus 11 ~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~~~vd~~~~~------------------ 71 (133)
T 2dj3_A 11 VVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQ-KDLVIAKMDATAND------------------ 71 (133)
T ss_dssp ECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTS-SSEEEEEECTTTSC------------------
T ss_pred EEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCC-CCEEEEEecCCcCH------------------
Confidence 344444443322 4899999999999999999999999999999742 24777777666442
Q ss_pred chhhHHHHHhcCCCCccEEEEECCCCcE
Q 008336 423 DARKASLSRKFKVSGIPMLVAIGPSGRT 450 (569)
Q Consensus 423 ~d~~~~l~~~~~v~~~Pt~~lid~~G~i 450 (569)
.+++.|+|+++||+++++.+|++
T Consensus 72 -----~~~~~~~v~~~Pt~~~~~~g~~~ 94 (133)
T 2dj3_A 72 -----ITNDQYKVEGFPTIYFAPSGDKK 94 (133)
T ss_dssp -----CCCSSCCCSSSSEEEEECTTCTT
T ss_pred -----HHHhhcCCCcCCEEEEEeCCCcc
Confidence 35678999999999999876653
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-12 Score=106.80 Aligned_cols=74 Identities=19% Similarity=0.466 Sum_probs=63.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|.++++++.....++.++.|+++..+ ++++.|+|+
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------------------~l~~~~~v~ 77 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER-----------------------NICSKYSVR 77 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccH-----------------------hHHHhcCCC
Confidence 789999999999999999999999998887644346888888888664 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+++.+.
T Consensus 78 ~~Pt~~~~-~~g~~~~~~ 94 (111)
T 3uvt_A 78 GYPTLLLF-RGGKKVSEH 94 (111)
T ss_dssp SSSEEEEE-ETTEEEEEE
T ss_pred cccEEEEE-eCCcEEEec
Confidence 99999999 789887763
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-12 Score=105.97 Aligned_cols=81 Identities=22% Similarity=0.429 Sum_probs=66.8
Q ss_pred cCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCc
Q 008336 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (569)
Q Consensus 25 ~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (569)
.++++.+...-.+++ ++|+||++||++|+.+.|.+.++++.+++ ++.++.|+++..+
T Consensus 8 ~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~-------------------- 65 (109)
T 3tco_A 8 VLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG--KAVFGRLNVDENQ-------------------- 65 (109)
T ss_dssp ECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTCH--------------------
T ss_pred EecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC--CceEEEEccccCH--------------------
Confidence 344444443333578 99999999999999999999999999874 4889999998764
Q ss_pred hhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 104 ETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|++.++|+++++ ++|+++.
T Consensus 66 ----~~~~~~~i~~~Pt~~~~-~~g~~~~ 89 (109)
T 3tco_A 66 ----KIADKYSVLNIPTTLIF-VNGQLVD 89 (109)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred ----HHHHhcCcccCCEEEEE-cCCcEEE
Confidence 48899999999999999 8898875
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-12 Score=105.69 Aligned_cols=71 Identities=17% Similarity=0.466 Sum_probs=62.7
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.++++.+++ +.++.|++|.+. ++++.|++
T Consensus 15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~v~~~~~~-----------------------~~~~~~~v 67 (104)
T 2e0q_A 15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLNSDENP-----------------------DIAARYGV 67 (104)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC----ceEEEEECCCCH-----------------------HHHHhCCc
Confidence 378999999999999999999999999888753 889999888664 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++|+++++ ++|+++.+.
T Consensus 68 ~~~Pt~~~~-~~g~~~~~~ 85 (104)
T 2e0q_A 68 MSLPTVIFF-KDGEPVDEI 85 (104)
T ss_dssp CSSCEEEEE-ETTEEEEEE
T ss_pred cccCEEEEE-ECCeEhhhc
Confidence 999999999 899998763
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-12 Score=109.95 Aligned_cols=90 Identities=29% Similarity=0.509 Sum_probs=68.9
Q ss_pred cCccCCceecCCCceeecCC-CCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhC
Q 008336 16 SSSARDFLIRSNGDQVKLDS-LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (569)
Q Consensus 16 g~~~pdf~~~~~g~~v~l~~-~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~ 93 (569)
+..+++-+..++++.+...- -.++ ++|+||++||++|+.+.|.+.++++++++ ++.++.|+++.+.
T Consensus 17 ~~~m~~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~~~~~---------- 84 (128)
T 2o8v_B 17 RGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG--KLTVAKLNIDQNP---------- 84 (128)
T ss_dssp ----CCCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT--TEEEEEEETTTCC----------
T ss_pred ccccccccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEECCCCH----------
Confidence 44444444445555554322 3577 99999999999999999999999999864 4999999998653
Q ss_pred CCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 94 PWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|+|.++|+++++ ++|+++.
T Consensus 85 --------------~l~~~~~v~~~Pt~~~~-~~G~~~~ 108 (128)
T 2o8v_B 85 --------------GTAPKYGIRGIPTLLLF-KNGEVAA 108 (128)
T ss_dssp --------------TTSGGGTCCSSSEEEEE-ETTEEEE
T ss_pred --------------HHHHHcCCCccCEEEEE-eCCEEEE
Confidence 37789999999999999 8998875
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-12 Score=108.40 Aligned_cols=70 Identities=24% Similarity=0.582 Sum_probs=62.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|.+++++++ ++.++.|++|..+ .+++.|+|+
T Consensus 28 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~-----------------------~~~~~~~v~ 80 (118)
T 2vm1_A 28 GKLVIIDFTASWCGPCRVIAPVFAEYAKKFP----GAIFLKVDVDELK-----------------------DVAEAYNVE 80 (118)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSH-----------------------HHHHHTTCC
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHCC----CcEEEEEEcccCH-----------------------HHHHHcCCC
Confidence 7899999999999999999999999998875 4889999888654 488999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++|+++++ ++|+++.+.
T Consensus 81 ~~Pt~~~~-~~g~~~~~~ 97 (118)
T 2vm1_A 81 AMPTFLFI-KDGEKVDSV 97 (118)
T ss_dssp SBSEEEEE-ETTEEEEEE
T ss_pred cCcEEEEE-eCCeEEEEe
Confidence 99999999 799998763
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-12 Score=106.26 Aligned_cols=69 Identities=29% Similarity=0.644 Sum_probs=62.0
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.++++++++ ++.++.|+++.+. .+++.|+|
T Consensus 16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~v 69 (112)
T 2voc_A 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD--KLKIVKIDVDENQ------------------------ETAGKYGV 69 (112)
T ss_dssp SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT--TCEEEEEETTTCC------------------------SHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEECCCCH------------------------HHHHHcCC
Confidence 688 99999999999999999999999999874 4899999998652 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 70 ~~~Pt~~~~-~~G~~~~ 85 (112)
T 2voc_A 70 MSIPTLLVL-KDGEVVE 85 (112)
T ss_dssp CSBSEEEEE-ETTEEEE
T ss_pred CcccEEEEE-eCCEEEE
Confidence 999999999 8999875
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=116.93 Aligned_cols=116 Identities=14% Similarity=0.223 Sum_probs=96.4
Q ss_pred cCCccceecCCC--Cceeccc-CCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeE-EEEEeCCCChhHHHHH
Q 008336 336 SGDLDFVVGKNG--GKVPVSD-LAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLE-VVFISSDRDQTSFDEF 410 (569)
Q Consensus 336 ~~~~~f~~~~~g--~~v~l~~-~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~-vv~is~d~~~~~~~~~ 410 (569)
...|+|.+..+| ++++|++ ++||++||+|| +.|||.|..+++.+++.+.+++++ +++ |++||+|. +...++|
T Consensus 18 d~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~--gv~~VigIS~D~-~~~~~~w 94 (171)
T 2xhf_A 18 DIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEE--GYHTIACIAVND-PFVMAAW 94 (171)
T ss_dssp CBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHT--TCCEEEEEESSC-HHHHHHH
T ss_pred CCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCCEEEEEeCCC-HHHHHHH
Confidence 346899884444 8999999 59999999998 789999999999999999999876 685 99999994 4677778
Q ss_pred HhcCCC-cccccCchhhHHHHHhcCCC-----------CccEEEEECCCCcEEEccc
Q 008336 411 FKGMPW-LALPFGDARKASLSRKFKVS-----------GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 411 ~~~~~~-~~~~~~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~ 455 (569)
.+..+. ..+|++.|.+.++++.||+. ....+|||| +|+|++...
T Consensus 95 ~~~~~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~v 150 (171)
T 2xhf_A 95 GKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVST 150 (171)
T ss_dssp HHHHCTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEEE
T ss_pred HHhcCCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEEE
Confidence 776663 27899999999999999974 246789998 999999853
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=122.73 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=79.6
Q ss_pred cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCc
Q 008336 344 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 423 (569)
Q Consensus 344 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~ 423 (569)
+.++..+......++++||+||++||++|+.+.|.|.+++++++++ +.++.|+++..+
T Consensus 101 ~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~~~~~------------------- 158 (210)
T 3apq_A 101 TLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGAVNCGDDR------------------- 158 (210)
T ss_dssp ECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTCH-------------------
T ss_pred EecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCc---eEEEEEECCccH-------------------
Confidence 3444444333345899999999999999999999999999998754 899999988764
Q ss_pred hhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 008336 424 ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 489 (569)
Q Consensus 424 d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~ 489 (569)
.+++.|+|.++||++++ ++|+++.+..+ ....++|.+.|++++....
T Consensus 159 ----~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G--------------~~~~~~l~~~i~~~l~~~~ 205 (210)
T 3apq_A 159 ----MLCRMKGVNSYPSLFIF-RSGMAAVKYNG--------------DRSKESLVAFAMQHVRSTV 205 (210)
T ss_dssp ----HHHHHTTCCSSSEEEEE-CTTSCCEECCS--------------CCCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHcCCCcCCeEEEE-ECCCceeEecC--------------CCCHHHHHHHHHHhCcccc
Confidence 48899999999999999 89998766321 1123456677777665544
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-12 Score=107.86 Aligned_cols=71 Identities=24% Similarity=0.630 Sum_probs=62.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|++++++++ ++.++.|++|..+ .+++.|++
T Consensus 25 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~~-----------------------~~~~~~~v 77 (113)
T 1ti3_A 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP----NVTFLKVDVDELK-----------------------AVAEEWNV 77 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTCH-----------------------HHHHHHHC
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC----CcEEEEEEccccH-----------------------HHHHhCCC
Confidence 48999999999999999999999999988875 4899999888664 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++|+++++ ++|+++.+.
T Consensus 78 ~~~Pt~~~~-~~G~~~~~~ 95 (113)
T 1ti3_A 78 EAMPTFIFL-KDGKLVDKT 95 (113)
T ss_dssp SSTTEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-eCCEEEEEE
Confidence 999999999 799998774
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-12 Score=108.33 Aligned_cols=72 Identities=28% Similarity=0.578 Sum_probs=63.6
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.+++++++.+ +.++.|+++.++ .+++.|+|
T Consensus 29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~i 82 (121)
T 2i1u_A 29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERATD---LTVAKLDVDTNP-----------------------ETARNFQV 82 (121)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCCH-----------------------HHHHhcCC
Confidence 3789999999999999999999999999998654 899999988664 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++||++++ ++|+++.+.
T Consensus 83 ~~~Pt~~~~-~~g~~~~~~ 100 (121)
T 2i1u_A 83 VSIPTLILF-KDGQPVKRI 100 (121)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcCCEEEEE-ECCEEEEEe
Confidence 999999999 699998763
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-11 Score=103.00 Aligned_cols=81 Identities=30% Similarity=0.566 Sum_probs=65.6
Q ss_pred cCCCceeecC-CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCC
Q 008336 25 RSNGDQVKLD-SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (569)
Q Consensus 25 ~~~g~~v~l~-~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (569)
.++++.+... .-.++ ++|+||++||++|+.+.|.+.++++++.. ++.++.|+++.+.
T Consensus 6 ~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~------------------- 64 (108)
T 2trx_A 6 HLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNP------------------- 64 (108)
T ss_dssp ECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCT-------------------
T ss_pred ecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC--CcEEEEEECCCCH-------------------
Confidence 3444444322 22577 99999999999999999999999999864 4999999998653
Q ss_pred chhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 103 SETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|++.++|+++++ ++|+++.
T Consensus 65 -----~~~~~~~v~~~Pt~~~~-~~G~~~~ 88 (108)
T 2trx_A 65 -----GTAPKYGIRGIPTLLLF-KNGEVAA 88 (108)
T ss_dssp -----THHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred -----HHHHHcCCcccCEEEEE-eCCEEEE
Confidence 47889999999999999 7898875
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-12 Score=105.76 Aligned_cols=69 Identities=28% Similarity=0.617 Sum_probs=61.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.+.++++++.+ ++.++.|+++.+. .+++.|++
T Consensus 16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~~~------------------------~~~~~~~v 69 (105)
T 1nsw_A 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENP------------------------ETTSQFGI 69 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT--TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECcCCH------------------------HHHHHcCC
Confidence 577 99999999999999999999999999864 4899999998764 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 70 ~~~Pt~~~~-~~G~~~~ 85 (105)
T 1nsw_A 70 MSIPTLILF-KGGRPVK 85 (105)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred ccccEEEEE-eCCeEEE
Confidence 999999999 8898765
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-12 Score=113.48 Aligned_cols=69 Identities=23% Similarity=0.340 Sum_probs=60.4
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+|||+||++|+.+.|.|.++++++.+ .+.++.|++|... .+++.|+|
T Consensus 22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~--~~~~~~vd~d~~~------------------------~l~~~~~v 75 (149)
T 3gix_A 22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSK--MAAIYLVDVDQTA------------------------VYTQYFDI 75 (149)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTT--TEEEEEEETTTCC------------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccC--ceEEEEEECCcCH------------------------HHHHHcCC
Confidence 578 99999999999999999999999998864 3899999998663 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 76 ~~~Pt~~~~-~~G~~v~ 91 (149)
T 3gix_A 76 SYIPSTVFF-FNGQHMK 91 (149)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CccCeEEEE-ECCeEEE
Confidence 999999955 7898873
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=8e-12 Score=109.23 Aligned_cols=71 Identities=30% Similarity=0.544 Sum_probs=62.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
++.++|+||++||++|+.+.|.|.+++++++++ +.++.|+++.+. .+++.|+|.
T Consensus 50 ~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v~ 103 (140)
T 1v98_A 50 APLTLVDFFAPWCGPCRLVSPILEELARDHAGR---LKVVKVNVDEHP-----------------------GLAARYGVR 103 (140)
T ss_dssp CCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCCCH-----------------------HHHHHCCCC
Confidence 333999999999999999999999999998754 899999988764 488999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+++.+.
T Consensus 104 ~~Pt~~~~-~~G~~~~~~ 120 (140)
T 1v98_A 104 SVPTLVLF-RRGAPVATW 120 (140)
T ss_dssp SSSEEEEE-ETTEEEEEE
T ss_pred ccCEEEEE-eCCcEEEEE
Confidence 99999999 799998763
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-12 Score=105.48 Aligned_cols=68 Identities=18% Similarity=0.317 Sum_probs=53.2
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+|||+||++|+.+.|.+.++++++. ++.++.|+++.++ .+++.|+|
T Consensus 17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~~~~~------------------------~l~~~~~v 69 (105)
T 4euy_A 17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN---YVEKIEILLQDMQ------------------------EIAGRYAV 69 (105)
T ss_dssp CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT---TEEEEEEEECCC---------------------------------
T ss_pred cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC---CceEEEEECCCCH------------------------HHHHhcCC
Confidence 577 9999999999999999999999999883 4999999998764 48889999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 70 ~~~Pt~~~~-~~G~~~~ 85 (105)
T 4euy_A 70 FTGPTVLLF-YNGKEIL 85 (105)
T ss_dssp CCCCEEEEE-ETTEEEE
T ss_pred CCCCEEEEE-eCCeEEE
Confidence 999999999 5898875
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-12 Score=110.04 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=62.1
Q ss_pred Cc-EEEEEecCCC--HhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 38 GK-IGLYFSASWC--GPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 38 gk-vlv~F~a~wC--~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
++ +||+|||+|| ++|+.+.|.|.+++++|.. ++.++.|++|.++ .++..|+
T Consensus 33 ~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~--~v~~~KVdvDe~~------------------------~la~~yg 86 (137)
T 2qsi_A 33 GKIVVLFFRGDAVRFPEAADLAVVLPELINAFPG--RLVAAEVAAEAER------------------------GLMARFG 86 (137)
T ss_dssp SSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTT--TEEEEEECGGGHH------------------------HHHHHHT
T ss_pred CCcEEEEEeCCccCCCchhhHHhHHHHHHHHccC--CcEEEEEECCCCH------------------------HHHHHcC
Confidence 45 9999999999 9999999999999999864 5999999998664 5999999
Q ss_pred CCCccEEEEECCCCcEEEc
Q 008336 115 VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 115 v~~~P~~~lid~~G~i~~~ 133 (569)
|+++||++++ ++|+.+.+
T Consensus 87 V~siPTlilF-kdG~~v~~ 104 (137)
T 2qsi_A 87 VAVCPSLAVV-QPERTLGV 104 (137)
T ss_dssp CCSSSEEEEE-ECCEEEEE
T ss_pred CccCCEEEEE-ECCEEEEE
Confidence 9999999999 89998874
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-12 Score=114.68 Aligned_cols=141 Identities=13% Similarity=0.250 Sum_probs=104.4
Q ss_pred CCcccee-c--C---------CC----Cceeccc-CCCCEEEEEEe-cCCChhHH-hhhHHHHHHHHHH-hhcCCCe-EE
Q 008336 337 GDLDFVV-G--K---------NG----GKVPVSD-LAGKTILLYFS-AHWCPPCR-AFLPKLIDAYKKI-KERNESL-EV 395 (569)
Q Consensus 337 ~~~~f~~-~--~---------~g----~~v~l~~-~~gk~vll~F~-a~wC~~C~-~~~~~l~~l~~~~-~~~~~~~-~v 395 (569)
..|+|.+ + . +| +.+++++ ++||++||+|| +.|||.|. .+++.+++.+.++ ++. ++ .|
T Consensus 6 ~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~--g~~~V 83 (182)
T 1xiy_A 6 LIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKEN--NFDDI 83 (182)
T ss_dssp BCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTS--CCSEE
T ss_pred CCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCcEE
Confidence 4588887 5 3 67 7999998 69999999888 78999999 9999999999999 776 67 49
Q ss_pred EEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC------C-----ccEEEEECCCCcEEEccchhhHhhcCC
Q 008336 396 VFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS------G-----IPMLVAIGPSGRTITKEARDMIAVHGA 464 (569)
Q Consensus 396 v~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~------~-----~Pt~~lid~~G~i~~~~~~~~~~~~g~ 464 (569)
++||+| ++...++|.+.++.-.||++.|.+.++++.||+. + .+.+|||| +|+|++........ -+.
T Consensus 84 ~gvS~D-~~~~~~~~~~~~~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~v~~~~~-~~~ 160 (182)
T 1xiy_A 84 YCITNN-DIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQEKDKQ-HNI 160 (182)
T ss_dssp EEEESS-CHHHHHHHHHHTTCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEECSSCC-TTC
T ss_pred EEEeCC-CHHHHHHHHHHcCCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEEEeCCcc-ccc
Confidence 999999 4467788888777326999999999999999973 2 57889998 99999985321000 000
Q ss_pred CCCCCCHHHHHHHHHHhh
Q 008336 465 EAYPFTEERMKEIDGQYN 482 (569)
Q Consensus 465 ~~~p~~~~~~~~l~~~l~ 482 (569)
+.-|+.....+++.+.|+
T Consensus 161 ~~~~~~~~~~~~vL~~L~ 178 (182)
T 1xiy_A 161 QTDPYDISTVNNVKEFLK 178 (182)
T ss_dssp SSCCCSTTSHHHHHHHHH
T ss_pred ccCcccCCCHHHHHHHHH
Confidence 011233456666766665
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7e-12 Score=104.52 Aligned_cols=70 Identities=23% Similarity=0.470 Sum_probs=60.8
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCC-CCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~-g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
++ ++|+||++||++|+.+.|.+.++++++... ..+.++.|+++... .+++.|+|
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~------------------------~l~~~~~v 76 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER------------------------NICSKYSV 76 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccH------------------------hHHHhcCC
Confidence 77 999999999999999999999999987654 35899999998764 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 77 ~~~Pt~~~~-~~g~~~~ 92 (111)
T 3uvt_A 77 RGYPTLLLF-RGGKKVS 92 (111)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CcccEEEEE-eCCcEEE
Confidence 999999998 6787764
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-12 Score=119.95 Aligned_cols=93 Identities=23% Similarity=0.463 Sum_probs=74.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+|+++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.++ .+++.|+|
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~-----------------------~l~~~~~v 82 (222)
T 3dxb_A 29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-----------------------GTAPKYGI 82 (222)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCT-----------------------TTGGGGTC
T ss_pred cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCCCH-----------------------HHHHHcCC
Confidence 4799999999999999999999999999999764 899999998764 37889999
Q ss_pred CCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 008336 436 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 489 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~ 489 (569)
.++||++++ ++|+++.+..+. .+ .+.|.+.|++++....
T Consensus 83 ~~~Pt~~~~-~~G~~~~~~~G~-----------~~---~~~l~~~l~~~l~~~~ 121 (222)
T 3dxb_A 83 RGIPTLLLF-KNGEVAATKVGA-----------LS---KGQLKEFLDANLAGSA 121 (222)
T ss_dssp CSBSEEEEE-ETTEEEEEEESC-----------CC---HHHHHHHHHHHSCCSC
T ss_pred CcCCEEEEE-ECCeEEEEeccc-----------cC---hHHHHHHHHhhccccc
Confidence 999999999 589988764221 12 3456666666665443
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.31 E-value=4e-12 Score=114.15 Aligned_cols=120 Identities=11% Similarity=0.203 Sum_probs=96.2
Q ss_pred ccccccccCccCCceecCCC--ceeecCC-CCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEE-EEEEeCCCC
Q 008336 9 HDIQSLLSSSARDFLIRSNG--DQVKLDS-LKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFE-VIFVSGDED 82 (569)
Q Consensus 9 ~~~~~~~g~~~pdf~~~~~g--~~v~l~~-~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~-vv~v~~d~~ 82 (569)
|...-.+|+.+|+|.+..+| +.++|++ ++|| ++|+|| +.|||.|..+++.|++.+.+|++.| +. |++||+| +
T Consensus 10 ~~~~~~vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~g-v~~VigIS~D-~ 87 (171)
T 2xhf_A 10 HGSPIKVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEG-YHTIACIAVN-D 87 (171)
T ss_dssp -CCCCCTTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTT-CCEEEEEESS-C
T ss_pred CCCcccCcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC-CCEEEEEeCC-C
Confidence 34555789999999554555 8999999 4999 888887 7899999999999999999999886 85 9999999 6
Q ss_pred HHHHHHHHHhCCC--cccccCCchhHHHHHHhcCCC-----------CccEEEEECCCCcEEEc
Q 008336 83 DEAFKGYFSKMPW--LAVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 83 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~ 133 (569)
....++|.++.+. .+..++|.+ ..+++.||+. ....++||| +|+|+..
T Consensus 88 ~~~~~~w~~~~~~~~~f~lLSD~~--~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~ 148 (171)
T 2xhf_A 88 PFVMAAWGKTVDPEHKIRMLADMH--GEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSV 148 (171)
T ss_dssp HHHHHHHHHHHCTTCCSEEEECTT--SHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEE
T ss_pred HHHHHHHHHhcCCCCCeEEEEeCC--chHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEE
Confidence 7788888888776 455556644 4789999873 346789998 9999874
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6.2e-12 Score=105.08 Aligned_cols=72 Identities=18% Similarity=0.401 Sum_probs=59.9
Q ss_pred CCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 34 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
.+.+|+ ++|+||++||++|+.+.|.|.+++++++ ++.++.|+++... ..+++.
T Consensus 20 ~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~-----------------------~~~~~~ 73 (111)
T 2pu9_C 20 KAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL---DVIFLKLDCNQEN-----------------------KTLAKE 73 (111)
T ss_dssp TTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTT-----------------------HHHHHH
T ss_pred HhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC---CeEEEEEecCcch-----------------------HHHHHH
Confidence 344688 9999999999999999999999999885 3889999988321 258899
Q ss_pred cCCCCccEEEEECCCCcEEE
Q 008336 113 FKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i~~ 132 (569)
|++.++|++++ +++|+++.
T Consensus 74 ~~v~~~Pt~~~-~~~G~~~~ 92 (111)
T 2pu9_C 74 LGIRVVPTFKI-LKENSVVG 92 (111)
T ss_dssp HCCSBSSEEEE-ESSSSEEE
T ss_pred cCCCeeeEEEE-EeCCcEEE
Confidence 99999999554 58998875
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-12 Score=107.92 Aligned_cols=81 Identities=15% Similarity=0.289 Sum_probs=61.6
Q ss_pred cCCCCceecc-cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhc--CCCeEEEEEeCCCChhHHHHHHhcCCCcccc
Q 008336 344 GKNGGKVPVS-DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER--NESLEVVFISSDRDQTSFDEFFKGMPWLALP 420 (569)
Q Consensus 344 ~~~g~~v~l~-~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~ 420 (569)
..+++.+... ..++++++|+||++||++|+++.|.|.++++++++. ..++.++.|+++...
T Consensus 11 ~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------------- 74 (121)
T 2djj_A 11 VVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND---------------- 74 (121)
T ss_dssp ECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC----------------
T ss_pred EecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc----------------
Confidence 3444444433 135899999999999999999999999999999751 124788888877542
Q ss_pred cCchhhHHHHHhcCCCCccEEEEECCCCcE
Q 008336 421 FGDARKASLSRKFKVSGIPMLVAIGPSGRT 450 (569)
Q Consensus 421 ~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i 450 (569)
+++ +|+++||+++++++|++
T Consensus 75 --------~~~--~v~~~Pt~~~~~~~~~~ 94 (121)
T 2djj_A 75 --------VPD--EIQGFPTIKLYPAGAKG 94 (121)
T ss_dssp --------CSS--CCSSSSEEEEECSSCTT
T ss_pred --------ccc--ccCcCCeEEEEeCcCCC
Confidence 233 99999999999887774
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.30 E-value=6.1e-12 Score=103.93 Aligned_cols=69 Identities=25% Similarity=0.547 Sum_probs=61.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ ++|+||++||++|+.+.|.+.++++++++ ++.++.|+++.+. .+++.|++
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~------------------------~~~~~~~v 71 (106)
T 3die_A 18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEG--KADILKLDVDENP------------------------STAAKYEV 71 (106)
T ss_dssp CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CcEEEEEECCcCH------------------------HHHHhCCC
Confidence 788 99999999999999999999999999874 3899999998774 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|++++++ +|+++.
T Consensus 72 ~~~Pt~~~~~-~G~~~~ 87 (106)
T 3die_A 72 MSIPTLIVFK-DGQPVD 87 (106)
T ss_dssp CSBSEEEEEE-TTEEEE
T ss_pred cccCEEEEEe-CCeEEE
Confidence 9999999994 888775
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-11 Score=100.52 Aligned_cols=69 Identities=23% Similarity=0.597 Sum_probs=60.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.+.+++++++. ++.++.|+++.+. .+++.|++
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~------------------------~~~~~~~v 71 (107)
T 1dby_A 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESP------------------------NVASEYGI 71 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH------------------------HHHHHHTC
T ss_pred CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCH------------------------HHHHHCCC
Confidence 477 99999999999999999999999999864 4899999998764 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 72 ~~~Pt~~~~-~~G~~~~ 87 (107)
T 1dby_A 72 RSIPTIMVF-KGGKKCE 87 (107)
T ss_dssp CSSCEEEEE-SSSSEEE
T ss_pred CcCCEEEEE-eCCEEEE
Confidence 999999888 7898865
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.8e-12 Score=110.89 Aligned_cols=75 Identities=24% Similarity=0.406 Sum_probs=63.4
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
.-++++++|+||++||++|+.+.|.|+++++++++. ++.++.|+++..+ ++++.|
T Consensus 23 ~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~~~-----------------------~~~~~~ 77 (137)
T 2dj0_A 23 RDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCT--GLNFGKVDVGRYT-----------------------DVSTRY 77 (137)
T ss_dssp HSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSS--SCEEEECCTTTCH-----------------------HHHHHT
T ss_pred cCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--CeEEEEEeCccCH-----------------------HHHHHc
Confidence 334679999999999999999999999999999742 4888888777654 478889
Q ss_pred CCC------CccEEEEECCCCcEEEcc
Q 008336 434 KVS------GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 434 ~v~------~~Pt~~lid~~G~i~~~~ 454 (569)
+|. ++||++++ ++|+++.+.
T Consensus 78 ~v~~~~~~~~~Pt~~~~-~~G~~~~~~ 103 (137)
T 2dj0_A 78 KVSTSPLTKQLPTLILF-QGGKEAMRR 103 (137)
T ss_dssp TCCCCSSSSCSSEEEEE-SSSSEEEEE
T ss_pred cCcccCCcCCCCEEEEE-ECCEEEEEe
Confidence 998 99999999 789998764
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.3e-12 Score=105.18 Aligned_cols=71 Identities=30% Similarity=0.698 Sum_probs=59.9
Q ss_pred CCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 36 ~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
.+++ ++|+||++||++|+.+.|.+.++++++... ++.++.|+++... .+++.|+
T Consensus 19 ~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~------------------------~~~~~~~ 73 (112)
T 3d6i_A 19 AGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNS-NVSFLSIDADENS------------------------EISELFE 73 (112)
T ss_dssp TTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGT-TSEEEEEETTTCH------------------------HHHHHTT
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCC-CEEEEEEecccCH------------------------HHHHHcC
Confidence 3478 999999999999999999999999987544 4999999998764 4889999
Q ss_pred CCCccEEEEECCCCcEEE
Q 008336 115 VMGIPHLVILDENGKVLS 132 (569)
Q Consensus 115 v~~~P~~~lid~~G~i~~ 132 (569)
+.++|+++++ ++|+++.
T Consensus 74 v~~~Pt~~~~-~~G~~~~ 90 (112)
T 3d6i_A 74 ISAVPYFIII-HKGTILK 90 (112)
T ss_dssp CCSSSEEEEE-ETTEEEE
T ss_pred CCcccEEEEE-ECCEEEE
Confidence 9999999998 6898875
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=105.92 Aligned_cols=67 Identities=30% Similarity=0.511 Sum_probs=59.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.++++++++ .+.++.|+++.+. .+++.|+|
T Consensus 34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~l~~~~~v 87 (130)
T 2dml_A 34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD--VVKVGAVNADKHQ------------------------SLGGQYGV 87 (130)
T ss_dssp CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTT--TSEEEEEETTTCH------------------------HHHHHHTC
T ss_pred CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcC--ceEEEEEeCCCCH------------------------HHHHHcCC
Confidence 477 99999999999999999999999999864 4889999998763 48899999
Q ss_pred CCccEEEEECCCCc
Q 008336 116 MGIPHLVILDENGK 129 (569)
Q Consensus 116 ~~~P~~~lid~~G~ 129 (569)
.++|++++++++|+
T Consensus 88 ~~~Pt~~~~~~~~~ 101 (130)
T 2dml_A 88 QGFPTIKIFGANKN 101 (130)
T ss_dssp CSSSEEEEESSCTT
T ss_pred CccCEEEEEeCCCC
Confidence 99999999988886
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.9e-12 Score=106.09 Aligned_cols=75 Identities=20% Similarity=0.401 Sum_probs=60.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
|++++|+||++||++|+++.|.|.+++++++ ..++.++++...+ .+....+++.|+|.
T Consensus 29 ~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~-----~~v~~~~~~~~~~-----------------~~~~~~~~~~~~i~ 86 (118)
T 1zma_A 29 KETATFFIGRKTCPYCRKFAGTLSGVVAETK-----AHIYFINSEEPSQ-----------------LNDLQAFRSRYGIP 86 (118)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHHC-----CCCEEEETTCGGG-----------------HHHHHHHHHHHTCC
T ss_pred CCeEEEEEECCCCccHHHHHHHHHHHHHhcC-----CeEEEEECCCcCc-----------------HHHHHHHHHHcCCC
Confidence 7899999999999999999999999988874 3567777765421 01234688999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+++.+.
T Consensus 87 ~~Pt~~~~-~~G~~~~~~ 103 (118)
T 1zma_A 87 TVPGFVHI-TDGQINVRC 103 (118)
T ss_dssp SSCEEEEE-ETTEEEEEC
T ss_pred CCCeEEEE-ECCEEEEEe
Confidence 99999999 589988763
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=8.5e-12 Score=103.48 Aligned_cols=68 Identities=16% Similarity=0.311 Sum_probs=60.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ ++|+||++||++|+.+.|.+.++++++. ++.++.|+++.+. .+++.|++
T Consensus 20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~---~~~~~~vd~~~~~------------------------~~~~~~~v 72 (107)
T 1gh2_A 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQ------------------------GTAATNNI 72 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSH------------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC---CcEEEEEECccCH------------------------HHHHhcCC
Confidence 578 9999999999999999999999999983 4899999998763 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 73 ~~~Pt~~~~-~~G~~~~ 88 (107)
T 1gh2_A 73 SATPTFQFF-RNKVRID 88 (107)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CcccEEEEE-ECCeEEE
Confidence 999999999 7888765
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-11 Score=103.35 Aligned_cols=69 Identities=25% Similarity=0.545 Sum_probs=61.4
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.++++++.. ++.++.|+++.+. .+++.|+|
T Consensus 30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~--~v~~~~vd~d~~~------------------------~l~~~~~v 83 (119)
T 1w4v_A 30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG--KVVMAKVDIDDHT------------------------DLAIEYEV 83 (119)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--SSEEEEEETTTTH------------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCCCCH------------------------HHHHHcCC
Confidence 578 99999999999999999999999999864 4899999998663 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 84 ~~~Pt~~~~-~~G~~~~ 99 (119)
T 1w4v_A 84 SAVPTVLAM-KNGDVVD 99 (119)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CcccEEEEE-eCCcEEE
Confidence 999999999 8998875
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-11 Score=101.40 Aligned_cols=69 Identities=28% Similarity=0.568 Sum_probs=61.2
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.+.++++++.+ ++.++.|+++..+ .+++.|+|
T Consensus 21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~v 74 (111)
T 3gnj_A 21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE--SFGFYYVDVEEEK------------------------TLFQRFSL 74 (111)
T ss_dssp SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTCH------------------------HHHHHTTC
T ss_pred cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCcCh------------------------hHHHhcCC
Confidence 467 99999999999999999999999999864 4899999998764 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 75 ~~~Pt~~~~-~~g~~~~ 90 (111)
T 3gnj_A 75 KGVPQILYF-KDGEYKG 90 (111)
T ss_dssp CSSCEEEEE-ETTEEEE
T ss_pred CcCCEEEEE-ECCEEEE
Confidence 999999999 6888764
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.6e-12 Score=113.97 Aligned_cols=80 Identities=10% Similarity=0.177 Sum_probs=58.6
Q ss_pred CCCEEEEEEecCCChhHHhhhHH---HHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPK---LIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~---l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
.||+|||+|||+||++|+.+.+. ..++++.+.+. +.++.|+.|..++....|.. .+...
T Consensus 38 ~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~---fv~ikVD~de~~~l~~~y~~---------------~~q~~ 99 (173)
T 3ira_A 38 ENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEA---FVSIKVDREERPDIDNIYMT---------------VCQII 99 (173)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHH---CEEEEEETTTCHHHHHHHHH---------------HHHHH
T ss_pred hCCCEEEecccchhHhhccccccccCCHHHHHHHHhc---CceeeeCCcccCcHHHHHHH---------------HHHHH
Confidence 48999999999999999999983 24566666554 77777777765542222221 11223
Q ss_pred cCCCCccEEEEECCCCcEEEc
Q 008336 433 FKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~~ 453 (569)
+++.++|++++++++|+++..
T Consensus 100 ~gv~g~Pt~v~l~~dG~~v~~ 120 (173)
T 3ira_A 100 LGRGGWPLNIIMTPGKKPFFA 120 (173)
T ss_dssp HSCCCSSEEEEECTTSCEEEE
T ss_pred cCCCCCcceeeECCCCCceee
Confidence 599999999999999999986
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.29 E-value=6.6e-12 Score=104.86 Aligned_cols=71 Identities=17% Similarity=0.345 Sum_probs=61.7
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.++++.++ ++.++.|+++... ++++.|+|
T Consensus 18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~-----------------------~l~~~~~v 70 (110)
T 2l6c_A 18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP----QVAISSVDSEARP-----------------------ELMKELGF 70 (110)
T ss_dssp TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT----TSCEEEEEGGGCH-----------------------HHHHHTTC
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC----CcEEEEEcCcCCH-----------------------HHHHHcCC
Confidence 46899999999999999999999998887764 4788888877554 58899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++ ++|+++.+.
T Consensus 71 ~~~Pt~~~~-~~G~~v~~~ 88 (110)
T 2l6c_A 71 ERVPTLVFI-RDGKVAKVF 88 (110)
T ss_dssp CSSCEEEEE-ESSSEEEEE
T ss_pred cccCEEEEE-ECCEEEEEE
Confidence 999999999 899998874
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-12 Score=110.41 Aligned_cols=80 Identities=21% Similarity=0.518 Sum_probs=64.0
Q ss_pred ceeecCCCCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCch
Q 008336 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSE 104 (569)
Q Consensus 29 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 104 (569)
+.+.++..+|| ++|+||++||++|+.+.|.+ .++.+.+.. .+.++.|+++.+..
T Consensus 18 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~-------------------- 75 (130)
T 2kuc_A 18 EALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR--HFVNLKMDMEKGEG-------------------- 75 (130)
T ss_dssp HHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHH--HSEEEEECSSSTTH--------------------
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhc--CeEEEEEecCCcch--------------------
Confidence 34555666789 99999999999999999999 666665543 37778887774211
Q ss_pred hHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 105 TRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 105 ~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
..+++.|+|.++|+++++|++|+++.
T Consensus 76 --~~~~~~~~v~~~Pt~~~~d~~G~~~~ 101 (130)
T 2kuc_A 76 --VELRKKYGVHAYPTLLFINSSGEVVY 101 (130)
T ss_dssp --HHHHHHTTCCSSCEEEEECTTSCEEE
T ss_pred --HHHHHHcCCCCCCEEEEECCCCcEEE
Confidence 36889999999999999999999876
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.6e-12 Score=123.53 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=65.1
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
++|+|+|+||++||++|+.+.|.|.+++++++++ +.++.|++|.++ .+++.|+|
T Consensus 25 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v 78 (287)
T 3qou_A 25 MTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ---FILAKLDCDAEQ-----------------------MIAAQFGL 78 (287)
T ss_dssp TTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS---SEEEEEETTTCH-----------------------HHHHTTTC
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEEeCccCH-----------------------HHHHHcCC
Confidence 4899999999999999999999999999999764 899999998765 58999999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++ ++|+++.+.
T Consensus 79 ~~~Pt~~~~-~~G~~~~~~ 96 (287)
T 3qou_A 79 RAIPTVYLF-QNGQPVDGF 96 (287)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CCCCeEEEE-ECCEEEEEe
Confidence 999999999 799988764
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-12 Score=110.26 Aligned_cols=88 Identities=22% Similarity=0.357 Sum_probs=68.6
Q ss_pred CCceecCCCceee--cCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCc
Q 008336 20 RDFLIRSNGDQVK--LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL 96 (569)
Q Consensus 20 pdf~~~~~g~~v~--l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~ 96 (569)
|+.+..++.+.+. +..-+++ ++|+|||+||++|+.+.|.|.++++++... ++.++.|+++...
T Consensus 6 ~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~------------- 71 (137)
T 2dj0_A 6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCT-GLNFGKVDVGRYT------------- 71 (137)
T ss_dssp CSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSS-SCEEEECCTTTCH-------------
T ss_pred CceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-CeEEEEEeCccCH-------------
Confidence 3444444444332 3445677 999999999999999999999999999754 4888888888664
Q ss_pred ccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 97 AVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
.+++.|+|. ++|+++++ ++|+++.+
T Consensus 72 -----------~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~ 102 (137)
T 2dj0_A 72 -----------DVSTRYKVSTSPLTKQLPTLILF-QGGKEAMR 102 (137)
T ss_dssp -----------HHHHHTTCCCCSSSSCSSEEEEE-SSSSEEEE
T ss_pred -----------HHHHHccCcccCCcCCCCEEEEE-ECCEEEEE
Confidence 478889998 99999999 78888754
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.28 E-value=8.9e-12 Score=105.78 Aligned_cols=80 Identities=18% Similarity=0.358 Sum_probs=62.8
Q ss_pred eecCCCceeecC-CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCC---CCEEEEEEeCCCCHHHHHHHHHhCCCcc
Q 008336 23 LIRSNGDQVKLD-SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ---GDFEVIFVSGDEDDEAFKGYFSKMPWLA 97 (569)
Q Consensus 23 ~~~~~g~~v~l~-~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---g~~~vv~v~~d~~~~~~~~~~~~~~~~~ 97 (569)
+..++++.+... ..+++ ++|+|||+||++|+.+.|.|.+++++++.. .++.++.|+++...
T Consensus 9 v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------- 74 (121)
T 2djj_A 9 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-------------- 74 (121)
T ss_dssp SEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC--------------
T ss_pred eEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc--------------
Confidence 344566666544 24678 999999999999999999999999999762 24889999887541
Q ss_pred cccCCchhHHHHHHhcCCCCccEEEEECCCCc
Q 008336 98 VPFSDSETRDKLDELFKVMGIPHLVILDENGK 129 (569)
Q Consensus 98 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~ 129 (569)
+++ +|.++|++++++++|+
T Consensus 75 -----------~~~--~v~~~Pt~~~~~~~~~ 93 (121)
T 2djj_A 75 -----------VPD--EIQGFPTIKLYPAGAK 93 (121)
T ss_dssp -----------CSS--CCSSSSEEEEECSSCT
T ss_pred -----------ccc--ccCcCCeEEEEeCcCC
Confidence 223 8999999999987776
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.6e-12 Score=105.85 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=66.6
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++|+|+|||+||++|+.+.|.|+++++++. ++.++.|++|.. +..|+|+
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~----~v~f~kvd~d~~--------------------------~~~~~v~ 72 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFP----ETKFVKAIVNSC--------------------------IQHYHDN 72 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHHHHHHHHHHCT----TSEEEEEEGGGT--------------------------STTCCGG
T ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CCEEEEEEhHHh--------------------------HHHCCCC
Confidence 4599999999999999999999999999885 378888876632 4679999
Q ss_pred CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHH
Q 008336 437 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 479 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~ 479 (569)
++||++++ ++|+.+.+..+.. ..|.. .++...++.+..
T Consensus 73 ~~PT~~~f-k~G~~v~~~~G~~--~~gg~--~~~~~~le~~L~ 110 (118)
T 3evi_A 73 CLPTIFVY-KNGQIEAKFIGII--ECGGI--NLKLEELEWKLA 110 (118)
T ss_dssp GCSEEEEE-ETTEEEEEEESTT--TTTCS--SCCHHHHHHHHH
T ss_pred CCCEEEEE-ECCEEEEEEeChh--hhCCC--CCCHHHHHHHHH
Confidence 99999999 8999998854321 11211 355555555443
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=107.91 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=65.7
Q ss_pred cCCCceee-cCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCC
Q 008336 25 RSNGDQVK-LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (569)
Q Consensus 25 ~~~g~~v~-l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (569)
.++++.+. ...-.++ ++|+||++||++|+.+.|.|.++++++.. ++.++.|+++...
T Consensus 10 ~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~------------------- 68 (140)
T 3hz4_A 10 EFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS--SAVFGRINIATNP------------------- 68 (140)
T ss_dssp EECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEETTTCH-------------------
T ss_pred EcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCcCH-------------------
Confidence 34444444 2222477 99999999999999999999999999975 4899999998764
Q ss_pred chhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 103 SETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|+|.++|+++++ ++|+++.
T Consensus 69 -----~l~~~~~v~~~Pt~~~~-~~G~~~~ 92 (140)
T 3hz4_A 69 -----WTAEKYGVQGTPTFKFF-CHGRPVW 92 (140)
T ss_dssp -----HHHHHHTCCEESEEEEE-ETTEEEE
T ss_pred -----hHHHHCCCCcCCEEEEE-eCCcEEE
Confidence 48899999999999998 7888764
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-12 Score=109.78 Aligned_cols=72 Identities=28% Similarity=0.582 Sum_probs=58.8
Q ss_pred CCCEEEEEEecCCCh--------------hHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCccccc
Q 008336 356 AGKTILLYFSAHWCP--------------PCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPF 421 (569)
Q Consensus 356 ~gk~vll~F~a~wC~--------------~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~ 421 (569)
.+|+++|+||++||+ +|+.+.|.+.+++++++++ +.++.|++|.+.
T Consensus 20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~---~~~~~vd~d~~~----------------- 79 (123)
T 1oaz_A 20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP----------------- 79 (123)
T ss_dssp CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC----------CEEEEEETTSCT-----------------
T ss_pred CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC---eEEEEEECCCCH-----------------
Confidence 489999999999999 9999999999999988754 889999988764
Q ss_pred CchhhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 422 GDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 422 ~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
++++.|+|+++||++++ ++|+++.+.
T Consensus 80 ------~l~~~~~v~~~Pt~~~~-~~G~~~~~~ 105 (123)
T 1oaz_A 80 ------GTAPKYGIRGIPTLLLF-KNGEVAATK 105 (123)
T ss_dssp ------TTGGGGTCCBSSEEEEE-ESSSEEEEE
T ss_pred ------HHHHHcCCCccCEEEEE-ECCEEEEEE
Confidence 47899999999999999 999998763
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5.2e-12 Score=110.71 Aligned_cols=70 Identities=10% Similarity=0.258 Sum_probs=60.9
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+|||+||++|+.+.|.|.++++++.+ ++.++.|++|.+. .+++.|+|
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~------------------------~~~~~~~i 75 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITEVP------------------------DFNKMYEL 75 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCC------------------------TTTTSSCS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEccccCH------------------------HHHHHcCC
Confidence 478 99999999999999999999999999864 4999999998653 37789999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
.++|+++++ ++|+++..
T Consensus 76 ~~~Pt~~~~-~~G~~v~~ 92 (142)
T 1qgv_A 76 YDPCTVMFF-FRNKHIMI 92 (142)
T ss_dssp CSSCEEEEE-ETTEEEEE
T ss_pred CCCCEEEEE-ECCcEEEE
Confidence 999999999 57887753
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=112.73 Aligned_cols=114 Identities=14% Similarity=0.276 Sum_probs=91.5
Q ss_pred ccCccCCcee-c--C---------CC----ceeecCC-CCCc-EEEEEe-cCCCHhhH-hhHHHHHHHHHHh-cCCCCE-
Q 008336 15 LSSSARDFLI-R--S---------NG----DQVKLDS-LKGK-IGLYFS-ASWCGPCQ-RFTPILAEVYNEL-SRQGDF- 72 (569)
Q Consensus 15 ~g~~~pdf~~-~--~---------~g----~~v~l~~-~~gk-vlv~F~-a~wC~~C~-~~~p~l~~~~~~~-~~~g~~- 72 (569)
+|+.+|+|.+ + . +| +.+++++ ++|| ++|+|| +.|||.|. .+++.|++.+.+| +..| +
T Consensus 3 vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g-~~ 81 (182)
T 1xiy_A 3 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENN-FD 81 (182)
T ss_dssp TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSC-CS
T ss_pred CCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCC-Cc
Confidence 6999999954 3 2 67 7999998 6999 777775 89999999 9999999999999 8876 7
Q ss_pred EEEEEeCCCCHHHHHHHHHhCCC-cccccCCchhHHHHHHhcCCC-----------CccEEEEECCCCcEEEc
Q 008336 73 EVIFVSGDEDDEAFKGYFSKMPW-LAVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 73 ~vv~v~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~ 133 (569)
.|++||+| +....++|.++.+. .+..++|.+ ..+++.||+. ..+.++||| +|+|++.
T Consensus 82 ~V~gvS~D-~~~~~~~~~~~~~~~~f~lLsD~~--~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~ 150 (182)
T 1xiy_A 82 DIYCITNN-DIYVLKSWFKSMDIKKIKYISDGN--SSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKM 150 (182)
T ss_dssp EEEEEESS-CHHHHHHHHHHTTCCSSEEEECTT--SHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEE
T ss_pred EEEEEeCC-CHHHHHHHHHHcCCCCceEEEeCc--hHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEE
Confidence 49999999 67788899988887 355556644 4789999973 256789998 9999875
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=102.81 Aligned_cols=69 Identities=30% Similarity=0.632 Sum_probs=60.9
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.+.++++++++ ++.++.|+++.+. .+++.|++
T Consensus 22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~------------------------~~~~~~~v 75 (112)
T 1t00_A 22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD--KIEIVKLNIDENP------------------------GTAAKYGV 75 (112)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC--CeEEEEEEcCCCH------------------------HHHHhCCC
Confidence 478 99999999999999999999999999864 4899999998764 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 76 ~~~Pt~~~~-~~G~~~~ 91 (112)
T 1t00_A 76 MSIPTLNVY-QGGEVAK 91 (112)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CcccEEEEE-eCCEEEE
Confidence 999998888 7898865
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-11 Score=108.17 Aligned_cols=69 Identities=20% Similarity=0.552 Sum_probs=61.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.++++++.. ++.++.|+++.+. .+++.|+|
T Consensus 63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~i 116 (155)
T 2ppt_A 63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG--QVRLAKIDTQAHP------------------------AVAGRHRI 116 (155)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTST------------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccC--CEEEEEEeCCccH------------------------HHHHHcCC
Confidence 577 99999999999999999999999999974 4899999998663 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 117 ~~~Pt~~~~-~~G~~~~ 132 (155)
T 2ppt_A 117 QGIPAFILF-HKGRELA 132 (155)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CcCCEEEEE-eCCeEEE
Confidence 999999999 7898875
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-11 Score=99.58 Aligned_cols=81 Identities=27% Similarity=0.539 Sum_probs=66.1
Q ss_pred cCCCceeecC-CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCC
Q 008336 25 RSNGDQVKLD-SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (569)
Q Consensus 25 ~~~g~~v~l~-~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (569)
.++++.+... .-.++ ++|+||++||++|+.+.|.+.+++++++. ++.++.|+++.+.
T Consensus 6 ~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~------------------- 64 (107)
T 2i4a_A 6 AVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG--KVTVAKVNIDDNP------------------- 64 (107)
T ss_dssp ECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--SEEEEEEETTTCC-------------------
T ss_pred ecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC--cEEEEEEECCCCH-------------------
Confidence 3444444322 23577 99999999999999999999999999874 4999999998653
Q ss_pred chhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 103 SETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|++.++|+++++ ++|+++.
T Consensus 65 -----~~~~~~~v~~~Pt~~~~-~~G~~~~ 88 (107)
T 2i4a_A 65 -----ETPNAYQVRSIPTLMLV-RDGKVID 88 (107)
T ss_dssp -----HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred -----HHHHhcCCCccCEEEEE-eCCEEEE
Confidence 48899999999999999 8998875
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=105.05 Aligned_cols=70 Identities=27% Similarity=0.621 Sum_probs=61.6
Q ss_pred CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 35 ~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
..+++ ++|+||++||++|+.+.|.|.++++++. ++.++.|++|... .+++.|
T Consensus 35 ~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~vd~d~~~------------------------~l~~~~ 87 (124)
T 1xfl_A 35 NESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELK------------------------SVASDW 87 (124)
T ss_dssp HHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSH------------------------HHHHHT
T ss_pred hhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CcEEEEEECccCH------------------------HHHHHc
Confidence 34688 9999999999999999999999999985 4999999998663 488999
Q ss_pred CCCCccEEEEECCCCcEEE
Q 008336 114 KVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 114 ~v~~~P~~~lid~~G~i~~ 132 (569)
+|.++|+++++ ++|+++.
T Consensus 88 ~v~~~Pt~~~~-~~G~~~~ 105 (124)
T 1xfl_A 88 AIQAMPTFMFL-KEGKILD 105 (124)
T ss_dssp TCCSSSEEEEE-ETTEEEE
T ss_pred CCCccCEEEEE-ECCEEEE
Confidence 99999998888 7898875
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.5e-11 Score=100.90 Aligned_cols=82 Identities=27% Similarity=0.551 Sum_probs=67.4
Q ss_pred ecCCCceeecCC-CCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccC
Q 008336 24 IRSNGDQVKLDS-LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101 (569)
Q Consensus 24 ~~~~g~~v~l~~-~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 101 (569)
..++++.+...- -.++ ++|+||++||++|+.+.|.|.++++.+++ ++.++.|+++.+.
T Consensus 10 ~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~~~------------------ 69 (115)
T 1thx_A 10 ITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD--RLKVVKLEIDPNP------------------ 69 (115)
T ss_dssp EECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEESTTCH------------------
T ss_pred EEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCC--cEEEEEEEcCCCH------------------
Confidence 344555554322 3577 99999999999999999999999999864 4899999998764
Q ss_pred CchhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 102 DSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 102 ~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|++.++|+++++ ++|+++.
T Consensus 70 ------~~~~~~~v~~~Pt~~~~-~~G~~~~ 93 (115)
T 1thx_A 70 ------TTVKKYKVEGVPALRLV-KGEQILD 93 (115)
T ss_dssp ------HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred ------HHHHHcCCCceeEEEEE-cCCEEEE
Confidence 48899999999999999 8998875
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-12 Score=119.18 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=60.9
Q ss_pred eecCCCCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHH-HHhCC-CcccccCCch
Q 008336 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMP-WLAVPFSDSE 104 (569)
Q Consensus 31 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~-~~~~~-~~~~~~~~~~ 104 (569)
+.++..+|| |||+|||+||++|+.+.+.+ .++.+.+.+ ++.++.|++|...+....+ +...+ ..........
T Consensus 40 ~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (172)
T 3f9u_A 40 MEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN--DYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDK 117 (172)
T ss_dssp HHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC--CEEEEEEecCcccccchhhhhhhcchhhhhhhhhhh
Confidence 444556799 99999999999999974333 444444433 4899999998653200000 00000 0000000001
Q ss_pred hHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 105 TRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 105 ~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
......+.|++.++|+++++|++|+++.+
T Consensus 118 ~~~~~~~~~~v~~~Pt~~lid~~G~~~~~ 146 (172)
T 3f9u_A 118 WSYLQRVKFGANAQPFYVLIDNEGNPLNK 146 (172)
T ss_dssp HHHHHHHHHSCCCSSEEEEECTTSCBSSC
T ss_pred hhHHHHHHcCCCCcceEEEECCCCCEEee
Confidence 11122588999999999999999998764
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.4e-12 Score=109.31 Aligned_cols=73 Identities=19% Similarity=0.437 Sum_probs=59.8
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
.+++.+|| ++|+|||+||++|+.+.|.|.++++++ ++.++.|+++... .++
T Consensus 34 ~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~----~v~~~~vd~~~~~------------------------~l~ 85 (133)
T 3cxg_A 34 VFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY----YVTLVDIDVDIHP------------------------KLN 85 (133)
T ss_dssp HHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE----ECEEEEEETTTCH------------------------HHH
T ss_pred HHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc----CEEEEEEeccchH------------------------HHH
Confidence 45667899 999999999999999999999887765 3788888888653 488
Q ss_pred HhcCCCCccEEEEE-CCCCc--EEE
Q 008336 111 ELFKVMGIPHLVIL-DENGK--VLS 132 (569)
Q Consensus 111 ~~~~v~~~P~~~li-d~~G~--i~~ 132 (569)
+.|+|.++|+++++ +++|+ ++.
T Consensus 86 ~~~~v~~~Pt~~~~~~~~g~g~~~~ 110 (133)
T 3cxg_A 86 DQHNIKALPTFEFYFNLNNEWVLVH 110 (133)
T ss_dssp HHTTCCSSSEEEEEEEETTEEEEEE
T ss_pred HhcCCCCCCEEEEEEecCCCeEEEE
Confidence 99999999999998 44665 554
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-12 Score=108.38 Aligned_cols=68 Identities=18% Similarity=0.292 Sum_probs=60.1
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.+.++++++.. ++.++.|+++... .+++.|+|
T Consensus 20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v 73 (122)
T 3aps_A 20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYP------------------------QTCQKAGI 73 (122)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCcCCH------------------------HHHHHcCC
Confidence 577 99999999999999999999999999875 4899999998764 48899999
Q ss_pred CCccEEEEECCCCcE
Q 008336 116 MGIPHLVILDENGKV 130 (569)
Q Consensus 116 ~~~P~~~lid~~G~i 130 (569)
.++|++++++.+|++
T Consensus 74 ~~~Pt~~~~~~~~~~ 88 (122)
T 3aps_A 74 KAYPSVKLYQYERAK 88 (122)
T ss_dssp CSSSEEEEEEEEGGG
T ss_pred CccceEEEEeCCCcc
Confidence 999999999877653
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-12 Score=109.11 Aligned_cols=72 Identities=26% Similarity=0.553 Sum_probs=60.1
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+++.|.|.+++++++....++.++.|+.+... .+++.|+|
T Consensus 23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------------------~~~~~~~v 79 (120)
T 1mek_A 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES-----------------------DLAQQYGV 79 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC-----------------------SSHHHHTC
T ss_pred cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCH-----------------------HHHHHCCC
Confidence 4799999999999999999999999999998754335777777766543 47889999
Q ss_pred CCccEEEEECCCCcEE
Q 008336 436 SGIPMLVAIGPSGRTI 451 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~ 451 (569)
+++|+++++ ++|+++
T Consensus 80 ~~~Pt~~~~-~~g~~~ 94 (120)
T 1mek_A 80 RGYPTIKFF-RNGDTA 94 (120)
T ss_dssp CSSSEEEEE-ESSCSS
T ss_pred CcccEEEEE-eCCCcC
Confidence 999999999 678754
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=104.54 Aligned_cols=83 Identities=20% Similarity=0.426 Sum_probs=64.7
Q ss_pred cCCCceeecCC-CCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcC--CCCEEEEEEeCCCCHHHHHHHHHhCCCccccc
Q 008336 25 RSNGDQVKLDS-LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSR--QGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPF 100 (569)
Q Consensus 25 ~~~g~~v~l~~-~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~--~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 100 (569)
.++.+.+...- -.++ ++|+||++||++|+.+.|.+.++++++.. .+++.++.|+++.+.
T Consensus 11 ~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----------------- 73 (133)
T 1x5d_A 11 ELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQ----------------- 73 (133)
T ss_dssp ECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCC-----------------
T ss_pred EcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCH-----------------
Confidence 34444443221 2467 99999999999999999999999999872 125999999988652
Q ss_pred CCchhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 101 SDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 101 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|+|.++|+++++++ |+++.
T Consensus 74 -------~l~~~~~v~~~Pt~~~~~~-g~~~~ 97 (133)
T 1x5d_A 74 -------VLASRYGIRGFPTIKIFQK-GESPV 97 (133)
T ss_dssp -------HHHHHHTCCSSSEEEEEET-TEEEE
T ss_pred -------HHHHhCCCCeeCeEEEEeC-CCceE
Confidence 5889999999999999976 76543
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=101.65 Aligned_cols=70 Identities=23% Similarity=0.519 Sum_probs=61.3
Q ss_pred CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 35 ~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
+.+++ ++|+||++||++|+.+.|.+.+++++++ ++.++.|+++... .+++.|
T Consensus 17 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~vd~~~~~------------------------~~~~~~ 69 (105)
T 3m9j_A 17 AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQ------------------------DVASES 69 (105)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHST---TSEEEEEETTTCH------------------------HHHHHT
T ss_pred hcCCCeEEEEEECCCChhhHHHHHHHHHHHHHcc---CeEEEEEEhhhhH------------------------HHHHHc
Confidence 34688 9999999999999999999999999885 3889999998764 488999
Q ss_pred CCCCccEEEEECCCCcEEE
Q 008336 114 KVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 114 ~v~~~P~~~lid~~G~i~~ 132 (569)
++.++|+++++ ++|+++.
T Consensus 70 ~v~~~Pt~~~~-~~g~~~~ 87 (105)
T 3m9j_A 70 EVKSMPTFQFF-KKGQKVG 87 (105)
T ss_dssp TCCBSSEEEEE-ETTEEEE
T ss_pred CCCcCcEEEEE-ECCeEEE
Confidence 99999999999 7787765
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-12 Score=111.21 Aligned_cols=76 Identities=25% Similarity=0.304 Sum_probs=60.9
Q ss_pred EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCc
Q 008336 359 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 438 (569)
Q Consensus 359 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~ 438 (569)
+++|+||++||++|+.+.|.|.+++++++ +.++.|+++..... ...+...++++.|+|.++
T Consensus 33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----v~~~~vd~~~~~~~--------------~~~d~~~~l~~~~~v~~~ 93 (135)
T 3emx_A 33 DAILAVYSKTCPHCHRDWPQLIQASKEVD-----VPIVMFIWGSLIGE--------------RELSAARLEMNKAGVEGT 93 (135)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHTTCC-----SCEEEEEECTTCCH--------------HHHHHHHHHHHHHTCCSS
T ss_pred cEEEEEECCcCHhhhHhChhHHHHHHHCC-----CEEEEEECCCchhh--------------hhhhhhHHHHHHcCCcee
Confidence 89999999999999999999999887763 67888888643221 011234578999999999
Q ss_pred cEEEEECCCCcEEEcc
Q 008336 439 PMLVAIGPSGRTITKE 454 (569)
Q Consensus 439 Pt~~lid~~G~i~~~~ 454 (569)
||+++++ +|+++.+.
T Consensus 94 Pt~~~~~-~G~~v~~~ 108 (135)
T 3emx_A 94 PTLVFYK-EGRIVDKL 108 (135)
T ss_dssp SEEEEEE-TTEEEEEE
T ss_pred CeEEEEc-CCEEEEEE
Confidence 9999996 99998874
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=108.90 Aligned_cols=68 Identities=16% Similarity=0.452 Sum_probs=61.0
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ ++|+||++||++|+.+.|.|.++++++. ++.++.|+++... .+++.|+|
T Consensus 31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~~~~~------------------------~l~~~~~v 83 (153)
T 2wz9_A 31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP---QVSFVKLEAEGVP------------------------EVSEKYEI 83 (153)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSH------------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC---CeEEEEEECCCCH------------------------HHHHHcCC
Confidence 588 9999999999999999999999999873 4899999998763 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|++++++ +|+++.
T Consensus 84 ~~~Pt~~~~~-~G~~~~ 99 (153)
T 2wz9_A 84 SSVPTFLFFK-NSQKID 99 (153)
T ss_dssp CSSSEEEEEE-TTEEEE
T ss_pred CCCCEEEEEE-CCEEEE
Confidence 9999999998 898875
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=102.95 Aligned_cols=68 Identities=24% Similarity=0.602 Sum_probs=60.1
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+|+ ++|+||++||++|+.+.|.|.++++++. ++.++.|+++.+. .+++.|++
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~---~v~~~~vd~~~~~------------------------~l~~~~~v 81 (114)
T 2oe3_A 29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP---DVRFVKCDVDESP------------------------DIAKECEV 81 (114)
T ss_dssp HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEECCCCH------------------------HHHHHCCC
Confidence 578 9999999999999999999999999875 2889999998764 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 82 ~~~Pt~~~~-~~G~~~~ 97 (114)
T 2oe3_A 82 TAMPTFVLG-KDGQLIG 97 (114)
T ss_dssp CSBSEEEEE-ETTEEEE
T ss_pred CcccEEEEE-eCCeEEE
Confidence 999999887 8898875
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=104.17 Aligned_cols=69 Identities=30% Similarity=0.561 Sum_probs=59.9
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.++++++ . ++.++.|+++.+. .+++.|+|
T Consensus 22 ~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~--~-~v~~~~vd~~~~~------------------------~~~~~~~i 74 (118)
T 2f51_A 22 APGLVLVDFFATWCGPCQRLGQILPSIAEAN--K-DVTFIKVDVDKNG------------------------NAADAYGV 74 (118)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHC--T-TSEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHC--C-CeEEEEEECCCCH------------------------HHHHhcCC
Confidence 478 999999999999999999999999998 2 5899999998764 48899999
Q ss_pred CCccEEEEECC---CCcEEE
Q 008336 116 MGIPHLVILDE---NGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~---~G~i~~ 132 (569)
.++|++++++. +|+++.
T Consensus 75 ~~~Pt~~~~~~~~~~G~~~~ 94 (118)
T 2f51_A 75 SSIPALFFVKKEGNEIKTLD 94 (118)
T ss_dssp CSSSEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEEeCCCCcceEEE
Confidence 99999999965 266654
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-11 Score=128.47 Aligned_cols=188 Identities=11% Similarity=0.107 Sum_probs=114.5
Q ss_pred cCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhccc
Q 008336 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (569)
Q Consensus 196 ~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v 275 (569)
.++.+++.|+++||++|+.+.|.+.++++++.+.+..+.++.++++.++ ...+++.|+|
T Consensus 29 ~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~---------------------~~~l~~~~~V 87 (519)
T 3t58_A 29 SSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET---------------------NSAVCREFNI 87 (519)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGG---------------------GHHHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccc---------------------cHHHHHHcCC
Confidence 4689999999999999999999999999999874445666666665433 5688999999
Q ss_pred CCCceEEEECC---CCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCccceecCCCCce--
Q 008336 276 STLPTLVIIGP---DGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV-- 350 (569)
Q Consensus 276 ~~~Ptlvi~~~---~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~~~g~~v-- 350 (569)
.++||+++++. +|+.... .+| ..+.+.+.+++........ .... ...|.+.. .+.+.+
T Consensus 88 ~~~PTl~~f~~g~~~G~~~~~-------~~g----~~~~~~L~~~l~~~l~~~~----~~~P-~~~p~l~~-it~~~l~~ 150 (519)
T 3t58_A 88 AGFPTVRFFQAFTKNGSGATL-------PGA----GANVQTLRMRLIDALESHR----DTWP-PACPPLEP-AKLNDIDG 150 (519)
T ss_dssp CSBSEEEEECTTCCSCCCEEE-------CCS----SCCHHHHHHHHHHHHTTCC----SCCC-TTCCCCSB-CCHHHHTT
T ss_pred cccCEEEEEcCcccCCCceeE-------ecC----CCCHHHHHHHHHHHHhhcc----ccCC-CCCCccCc-CCHHHHHH
Confidence 99999999986 3332111 111 2356666666554332111 0000 00111111 000000
Q ss_pred ecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHH
Q 008336 351 PVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS 430 (569)
Q Consensus 351 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ 430 (569)
-+..-..++++|.|.... .....++...+... ..+.|-.+ .+.+ ..++
T Consensus 151 ~l~~~~~~~vallF~~~~-------s~~~~~~~ldl~~~-~~v~v~~v-~~~~-----------------------~~l~ 198 (519)
T 3t58_A 151 FFTRNKADYLALVFERED-------SYLGREVTLDLSQY-HAVAVRRV-LNTE-----------------------SDLV 198 (519)
T ss_dssp GGGSCCCSEEEEEEECTT-------CCHHHHHHHHTTTC-TTEEEEEE-ETTC-----------------------HHHH
T ss_pred HhccCCCCeEEEEecCCc-------hHHHHHHHHHhhcc-CCeeEEEe-cCch-----------------------HHHH
Confidence 011123568888888543 12334444444432 23444333 2322 3589
Q ss_pred HhcCCCCccEEEEECCCCcEEEc
Q 008336 431 RKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 431 ~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
+.|+|+.+|++++++++|++...
T Consensus 199 ~kfgV~~~Pslvl~~~nGk~~~~ 221 (519)
T 3t58_A 199 NKFGVTDFPSCYLLLRNGSVSRV 221 (519)
T ss_dssp HHHTCCCSSEEEEEETTSCEEEC
T ss_pred HHcCCCCCCeEEEEeCCCceeec
Confidence 99999999999999999987544
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=99.90 Aligned_cols=68 Identities=22% Similarity=0.565 Sum_probs=60.5
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ ++|+||++||++|+.+.|.+.++++.+++ +.++.|+++.+. .+++.|++
T Consensus 15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~v~~~~~~------------------------~~~~~~~v 67 (104)
T 2e0q_A 15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ---VGFGKLNSDENP------------------------DIAARYGV 67 (104)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCH------------------------HHHHHTTC
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC---ceEEEEECCCCH------------------------HHHHhCCc
Confidence 578 99999999999999999999999998853 889999998763 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 68 ~~~Pt~~~~-~~g~~~~ 83 (104)
T 2e0q_A 68 MSLPTVIFF-KDGEPVD 83 (104)
T ss_dssp CSSCEEEEE-ETTEEEE
T ss_pred cccCEEEEE-ECCeEhh
Confidence 999999999 8898865
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.24 E-value=5.4e-11 Score=97.95 Aligned_cols=69 Identities=26% Similarity=0.585 Sum_probs=60.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.+.+++++++. ++.++.|+++.+. .+++.|++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~------------------------~~~~~~~v 70 (105)
T 1fb6_A 17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG--KIAVYKLNTDEAP------------------------GIATQYNI 70 (105)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcC--ceEEEEEcCcchH------------------------HHHHhCCC
Confidence 467 99999999999999999999999999864 4889999998763 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 71 ~~~Pt~~~~-~~g~~~~ 86 (105)
T 1fb6_A 71 RSIPTVLFF-KNGERKE 86 (105)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CcccEEEEE-eCCeEEE
Confidence 999998888 6898865
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-11 Score=103.81 Aligned_cols=68 Identities=24% Similarity=0.584 Sum_probs=60.4
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+|||+||++|+.+.|.|.++++++. ++.++.|+++... .+++.|+|
T Consensus 36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~------------------------~l~~~~~v 88 (125)
T 1r26_A 36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNS------------------------EIVSKCRV 88 (125)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCH------------------------HHHHHTTC
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC---CCEEEEEECCCCH------------------------HHHHHcCC
Confidence 678 9999999999999999999999999983 4899999998763 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 89 ~~~Pt~~i~-~~G~~~~ 104 (125)
T 1r26_A 89 LQLPTFIIA-RSGKMLG 104 (125)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CcccEEEEE-eCCeEEE
Confidence 999998888 7898865
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-11 Score=103.15 Aligned_cols=87 Identities=13% Similarity=0.178 Sum_probs=67.1
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ |+|+|||+||++|+.+.|.|.++++++. ++.++.|++|.. ...|+|
T Consensus 22 ~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~---~v~f~kvd~d~~---------------------------~~~~~v 71 (118)
T 3evi_A 22 EDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP---ETKFVKAIVNSC---------------------------IQHYHD 71 (118)
T ss_dssp TTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT---TSEEEEEEGGGT---------------------------STTCCG
T ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CCEEEEEEhHHh---------------------------HHHCCC
Confidence 356 9999999999999999999999999985 478888888732 267999
Q ss_pred CCccEEEEECCCCcEEEcC-CcceeecccCCCCCccHHHHHHHHH
Q 008336 116 MGIPHLVILDENGKVLSDG-GVEIIREYGVEGYPFTVERIKEMKE 159 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (569)
.++||++++ ++|+.+.+- |.. ..+ +-.++.+.++.++.
T Consensus 72 ~~~PT~~~f-k~G~~v~~~~G~~---~~g--g~~~~~~~le~~L~ 110 (118)
T 3evi_A 72 NCLPTIFVY-KNGQIEAKFIGII---ECG--GINLKLEELEWKLA 110 (118)
T ss_dssp GGCSEEEEE-ETTEEEEEEESTT---TTT--CSSCCHHHHHHHHH
T ss_pred CCCCEEEEE-ECCEEEEEEeChh---hhC--CCCCCHHHHHHHHH
Confidence 999999999 789888752 111 111 12567778777664
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-11 Score=100.95 Aligned_cols=68 Identities=24% Similarity=0.525 Sum_probs=60.2
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+||++||++|+.+.|.|.++++++.. ++.++.|+++... .+++.|++.
T Consensus 24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~ 77 (112)
T 1ep7_A 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVA------------------------AVAEAAGIT 77 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTTH------------------------HHHHHHTCC
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC--CeEEEEEECCchH------------------------HHHHHcCCC
Confidence 78 99999999999999999999999999864 4899999998653 488999999
Q ss_pred CccEEEEECCCCcEEE
Q 008336 117 GIPHLVILDENGKVLS 132 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~ 132 (569)
++|+++++ ++|+++.
T Consensus 78 ~~Pt~~~~-~~G~~~~ 92 (112)
T 1ep7_A 78 AMPTFHVY-KDGVKAD 92 (112)
T ss_dssp BSSEEEEE-ETTEEEE
T ss_pred cccEEEEE-ECCeEEE
Confidence 99998877 7898875
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=103.70 Aligned_cols=70 Identities=24% Similarity=0.608 Sum_probs=60.3
Q ss_pred CCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 34 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
++.+|+ ++|+|||+||++|+.+.|.+.++++++ ++.++.|+++... .+++.
T Consensus 29 ~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~----~~~~~~vd~~~~~------------------------~~~~~ 80 (117)
T 2xc2_A 29 EQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLE------------------------ETARK 80 (117)
T ss_dssp HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS----SSEEEEEETTTSH------------------------HHHHH
T ss_pred HhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc----CcEEEEEECCccH------------------------HHHHH
Confidence 334788 999999999999999999999998877 3889999998653 48899
Q ss_pred cCCCCccEEEEECCCCcEEE
Q 008336 113 FKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i~~ 132 (569)
|+|.++|+++++ ++|+++.
T Consensus 81 ~~v~~~Pt~~~~-~~G~~~~ 99 (117)
T 2xc2_A 81 YNISAMPTFIAI-KNGEKVG 99 (117)
T ss_dssp TTCCSSSEEEEE-ETTEEEE
T ss_pred cCCCccceEEEE-eCCcEEE
Confidence 999999998888 7898875
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=115.24 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=67.9
Q ss_pred ecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCC
Q 008336 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (569)
Q Consensus 24 ~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (569)
.+++++.+......|+ ++|+|||+||++|+.+.|.+.++++++.. .+.++.|+++...
T Consensus 100 ~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~~~~~------------------- 158 (210)
T 3apq_A 100 ITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDG--LLRIGAVNCGDDR------------------- 158 (210)
T ss_dssp EECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBT--TBEEEEEETTTCH-------------------
T ss_pred EEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcC--ceEEEEEECCccH-------------------
Confidence 3455555544445688 99999999999999999999999999864 4999999998764
Q ss_pred chhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 103 SETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|+|.++|+++++ ++|+++.
T Consensus 159 -----~l~~~~~v~~~Pt~~~~-~~G~~~~ 182 (210)
T 3apq_A 159 -----MLCRMKGVNSYPSLFIF-RSGMAAV 182 (210)
T ss_dssp -----HHHHHTTCCSSSEEEEE-CTTSCCE
T ss_pred -----HHHHHcCCCcCCeEEEE-ECCCcee
Confidence 48899999999999999 8887644
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=106.23 Aligned_cols=74 Identities=23% Similarity=0.518 Sum_probs=63.9
Q ss_pred eecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHH
Q 008336 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 109 (569)
Q Consensus 31 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (569)
+..+..+|+ ++|+||++||++|+.+.|.|.++++++. ++.++.|++|... .+
T Consensus 39 ~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~v~~~~~~------------------------~~ 91 (139)
T 3d22_A 39 LSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP---SLMFLVIDVDELS------------------------DF 91 (139)
T ss_dssp HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSH------------------------HH
T ss_pred HHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEeCcccH------------------------HH
Confidence 444445689 9999999999999999999999999874 4899999998663 48
Q ss_pred HHhcCCCCccEEEEECCCCcEEE
Q 008336 110 DELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 110 ~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
++.|+|.++|+++++ ++|+++.
T Consensus 92 ~~~~~v~~~Pt~~~~-~~G~~~~ 113 (139)
T 3d22_A 92 SASWEIKATPTFFFL-RDGQQVD 113 (139)
T ss_dssp HHHTTCCEESEEEEE-ETTEEEE
T ss_pred HHHcCCCcccEEEEE-cCCeEEE
Confidence 899999999999988 8998875
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-11 Score=102.42 Aligned_cols=68 Identities=29% Similarity=0.654 Sum_probs=60.1
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.++++++. ++.++.|+++.+. .+++.|++
T Consensus 33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~vd~~~~~------------------------~~~~~~~v 85 (122)
T 2vlu_A 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFP---NAVFLKVDVDELK------------------------PIAEQFSV 85 (122)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCH------------------------HHHHHTTC
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CcEEEEEECCCCH------------------------HHHHHcCC
Confidence 578 9999999999999999999999999875 2889999998763 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 86 ~~~Pt~~~~-~~G~~~~ 101 (122)
T 2vlu_A 86 EAMPTFLFM-KEGDVKD 101 (122)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CcccEEEEE-eCCEEEE
Confidence 999998888 7898875
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.9e-12 Score=108.59 Aligned_cols=70 Identities=10% Similarity=0.200 Sum_probs=61.4
Q ss_pred CCc-EEEEEecCC--CHhhHhhHHHHHHHHHHhcCCCC-EEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 37 KGK-IGLYFSASW--CGPCQRFTPILAEVYNELSRQGD-FEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 37 ~gk-vlv~F~a~w--C~~C~~~~p~l~~~~~~~~~~g~-~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
.++ |||+|||+| |++|+.+.|.|.+++++|.. + +.|+.|++|.++ .++..
T Consensus 33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g--~~v~~~KVdvDe~~------------------------~lA~~ 86 (140)
T 2qgv_A 33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPD--YTWQVAIADLEQSE------------------------AIGDR 86 (140)
T ss_dssp TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTT--SCCEEEECCHHHHH------------------------HHHHH
T ss_pred CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCC--CeEEEEEEECCCCH------------------------HHHHH
Confidence 456 999999999 99999999999999999864 4 889988888553 59999
Q ss_pred cCCCCccEEEEECCCCcEEEc
Q 008336 113 FKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i~~~ 133 (569)
|+|+++||+++| ++|+++.+
T Consensus 87 ygV~sIPTlilF-k~G~~v~~ 106 (140)
T 2qgv_A 87 FGAFRFPATLVF-TGGNYRGV 106 (140)
T ss_dssp HTCCSSSEEEEE-ETTEEEEE
T ss_pred cCCccCCEEEEE-ECCEEEEE
Confidence 999999999999 89998864
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=96.59 Aligned_cols=64 Identities=19% Similarity=0.433 Sum_probs=56.4
Q ss_pred CEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCC
Q 008336 358 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 437 (569)
Q Consensus 358 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~ 437 (569)
.++++.||++||++|+++.|.|+++++++++ ++.++.|++|.++ ++++.|++++
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~-----------------------~~~~~~~v~~ 56 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD---AVEVEYINVMENP-----------------------QKAMEYGIMA 56 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS---SEEEEEEESSSSC-----------------------CTTTSTTTCC
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC---ceEEEEEECCCCH-----------------------HHHHHCCCcc
Confidence 5789999999999999999999999998864 4899999988664 3788999999
Q ss_pred ccEEEEECCCCcE
Q 008336 438 IPMLVAIGPSGRT 450 (569)
Q Consensus 438 ~Pt~~lid~~G~i 450 (569)
+||+++ +|++
T Consensus 57 ~Pt~~~---~G~~ 66 (85)
T 1fo5_A 57 VPTIVI---NGDV 66 (85)
T ss_dssp SSEEEE---TTEE
T ss_pred cCEEEE---CCEE
Confidence 999999 7887
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.8e-11 Score=102.22 Aligned_cols=81 Identities=26% Similarity=0.516 Sum_probs=61.2
Q ss_pred cCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCc
Q 008336 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (569)
Q Consensus 25 ~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (569)
.++++.+...-..++ ++|+||++||++|+.+.|.|.++++++.. ++.++.|+++.+.
T Consensus 37 ~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~-------------------- 94 (140)
T 1v98_A 37 EADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAG--RLKVVKVNVDEHP-------------------- 94 (140)
T ss_dssp ------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCH--------------------
T ss_pred cCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccC--ceEEEEEECCCCH--------------------
Confidence 455655554444566 99999999999999999999999999864 4999999998764
Q ss_pred hhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 104 ETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|++.++|+++++ ++|+++.
T Consensus 95 ----~l~~~~~v~~~Pt~~~~-~~G~~~~ 118 (140)
T 1v98_A 95 ----GLAARYGVRSVPTLVLF-RRGAPVA 118 (140)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred ----HHHHHCCCCccCEEEEE-eCCcEEE
Confidence 48899999999999999 7898865
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.1e-12 Score=110.50 Aligned_cols=92 Identities=9% Similarity=0.126 Sum_probs=60.0
Q ss_pred CCEEEEEEecCC--ChhHHhhhHHHHHHHHHHhhcCCCeE--EEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 357 GKTILLYFSAHW--CPPCRAFLPKLIDAYKKIKERNESLE--VVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 357 gk~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~--vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
++.++|+||++| |++|+.+.|.|.++++++ ++ +. ++.|++|.. .++++.
T Consensus 34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~---v~~~~~~Vd~d~~-----------------------~~la~~ 86 (142)
T 2es7_A 34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ---FDWQVAVADLEQS-----------------------EAIGDR 86 (142)
T ss_dssp CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TT---SCCEEEEECHHHH-----------------------HHHHHT
T ss_pred CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cc---cceeEEEEECCCC-----------------------HHHHHh
Confidence 345788899887 999999999999999988 43 67 778776643 358999
Q ss_pred cCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCc
Q 008336 433 FKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 490 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~ 490 (569)
|+|+++||+++| ++|+++.+..|. .. .++|.+.|++++...+.
T Consensus 87 ~~V~~iPT~~~f-k~G~~v~~~~G~-----------~~---~~~l~~~i~~~l~~~~~ 129 (142)
T 2es7_A 87 FNVRRFPATLVF-TDGKLRGALSGI-----------HP---WAELLTLMRSIVDTPAA 129 (142)
T ss_dssp TTCCSSSEEEEE-SCC----CEESC-----------CC---HHHHHHHHHHHHC----
T ss_pred cCCCcCCeEEEE-eCCEEEEEEeCC-----------CC---HHHHHHHHHHHhccccc
Confidence 999999999999 899998874321 12 24466666666654433
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.6e-11 Score=98.04 Aligned_cols=70 Identities=31% Similarity=0.657 Sum_probs=61.0
Q ss_pred CCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 36 ~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
.+++ ++|+||++||++|+.+.|.+.+++++++. ++.++.|+++.+. .+++.|+
T Consensus 18 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~------------------------~~~~~~~ 71 (106)
T 1xwb_A 18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECE------------------------DIAMEYN 71 (106)
T ss_dssp HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCH------------------------HHHHHTT
T ss_pred cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC--CeEEEEEeccchH------------------------HHHHHcC
Confidence 3688 99999999999999999999999999863 5999999998663 4889999
Q ss_pred CCCccEEEEECCCCcEEE
Q 008336 115 VMGIPHLVILDENGKVLS 132 (569)
Q Consensus 115 v~~~P~~~lid~~G~i~~ 132 (569)
+.++|+++++ ++|+++.
T Consensus 72 v~~~Pt~~~~-~~G~~~~ 88 (106)
T 1xwb_A 72 ISSMPTFVFL-KNGVKVE 88 (106)
T ss_dssp CCSSSEEEEE-ETTEEEE
T ss_pred CCcccEEEEE-cCCcEEE
Confidence 9999998887 6888765
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=96.73 Aligned_cols=63 Identities=17% Similarity=0.341 Sum_probs=55.3
Q ss_pred EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCc
Q 008336 359 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 438 (569)
Q Consensus 359 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~ 438 (569)
+++++||++||++|+++.|.|++++++++++ +.++.|++|.++ ++++.|+++++
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~~~ 56 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVDR-----------------------EKAIEYGLMAV 56 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTCG-----------------------GGGGGTCSSCS
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcCC---eEEEEEECCCCH-----------------------HHHHhCCceee
Confidence 4689999999999999999999999998753 889999888664 47889999999
Q ss_pred cEEEEECCCCcE
Q 008336 439 PMLVAIGPSGRT 450 (569)
Q Consensus 439 Pt~~lid~~G~i 450 (569)
||+++ +|++
T Consensus 57 Pt~~~---~G~~ 65 (85)
T 1nho_A 57 PAIAI---NGVV 65 (85)
T ss_dssp SEEEE---TTTE
T ss_pred CEEEE---CCEE
Confidence 99999 7887
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-11 Score=103.33 Aligned_cols=78 Identities=24% Similarity=0.572 Sum_probs=61.1
Q ss_pred CCCEEEEEEecC-------CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHH
Q 008336 356 AGKTILLYFSAH-------WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 428 (569)
Q Consensus 356 ~gk~vll~F~a~-------wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 428 (569)
.+++++|+||++ ||++|+.+.|.|.++++++++ ++.++.|+++... .| . +....
T Consensus 23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~---~~~~~~vd~~~~~-~~---~------------d~~~~ 83 (123)
T 1wou_A 23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE---GCVFIYCQVGEKP-YW---K------------DPNND 83 (123)
T ss_dssp TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT---TEEEEEEECCCHH-HH---H------------CTTCH
T ss_pred CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC---CcEEEEEECCCch-hh---h------------chhHH
Confidence 489999999999 999999999999999888754 4889999886321 11 1 22346
Q ss_pred HHHhcCCCCccEEEEECCCCcEEE
Q 008336 429 LSRKFKVSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 429 l~~~~~v~~~Pt~~lid~~G~i~~ 452 (569)
+++.|+|+++||+++++..+++..
T Consensus 84 ~~~~~~i~~~Pt~~~~~~~~~~~g 107 (123)
T 1wou_A 84 FRKNLKVTAVPTLLKYGTPQKLVE 107 (123)
T ss_dssp HHHHHCCCSSSEEEETTSSCEEEG
T ss_pred HHHHCCCCeeCEEEEEcCCceEec
Confidence 888899999999999987455543
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.4e-11 Score=98.55 Aligned_cols=69 Identities=29% Similarity=0.617 Sum_probs=61.5
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.+.++++++.. ++.++.|+++.+. .+++.|++
T Consensus 17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~------------------------~~~~~~~v 70 (109)
T 2yzu_A 17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG--KLLVAKLDVDENP------------------------KTAMRYRV 70 (109)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT--TBEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC--ceEEEEEECCCCH------------------------hHHHhCCC
Confidence 478 99999999999999999999999999874 4999999998764 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 71 ~~~Pt~~~~-~~g~~~~ 86 (109)
T 2yzu_A 71 MSIPTVILF-KDGQPVE 86 (109)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CcCCEEEEE-eCCcEee
Confidence 999999999 8898775
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-11 Score=102.27 Aligned_cols=71 Identities=21% Similarity=0.495 Sum_probs=59.6
Q ss_pred CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 35 ~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
+.+|+ ++|+||++||++|+.+.|.+.+++++++ ++.++.|+++... ..+++.|
T Consensus 34 ~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~~~~~vd~~~~~-----------------------~~~~~~~ 87 (124)
T 1faa_A 34 AAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQEN-----------------------KTLAKEL 87 (124)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTT-----------------------HHHHHHH
T ss_pred hcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC---CCEEEEEecCcch-----------------------HHHHHHc
Confidence 34688 9999999999999999999999999875 3889999987321 2588999
Q ss_pred CCCCccEEEEECCCCcEEE
Q 008336 114 KVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 114 ~v~~~P~~~lid~~G~i~~ 132 (569)
++.++|+++++ ++|+++.
T Consensus 88 ~v~~~Pt~~~~-~~G~~~~ 105 (124)
T 1faa_A 88 GIRVVPTFKIL-KENSVVG 105 (124)
T ss_dssp CCSSSSEEEEE-ETTEEEE
T ss_pred CCCeeeEEEEE-eCCcEEE
Confidence 99999996666 7898875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-11 Score=119.72 Aligned_cols=71 Identities=20% Similarity=0.408 Sum_probs=63.2
Q ss_pred CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 35 ~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
..+|+ |+|+|||+||++|+.+.|.+.++++++++ ++.++.|+++.++ .+++.|
T Consensus 23 ~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~ 76 (287)
T 3qou_A 23 QSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG--QFILAKLDCDAEQ------------------------MIAAQF 76 (287)
T ss_dssp TTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS--SSEEEEEETTTCH------------------------HHHHTT
T ss_pred hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEEeCccCH------------------------HHHHHc
Confidence 34588 99999999999999999999999999974 4899999999764 488999
Q ss_pred CCCCccEEEEECCCCcEEE
Q 008336 114 KVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 114 ~v~~~P~~~lid~~G~i~~ 132 (569)
+|.++||++++ ++|+++.
T Consensus 77 ~v~~~Pt~~~~-~~G~~~~ 94 (287)
T 3qou_A 77 GLRAIPTVYLF-QNGQPVD 94 (287)
T ss_dssp TCCSSSEEEEE-ETTEEEE
T ss_pred CCCCCCeEEEE-ECCEEEE
Confidence 99999999999 7898875
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.2e-11 Score=97.86 Aligned_cols=70 Identities=29% Similarity=0.660 Sum_probs=60.8
Q ss_pred CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 35 ~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
+..++ ++|+||++||++|+.+.|.+.+++++++ ++.++.|+++... .+++.|
T Consensus 16 ~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~------------------------~~~~~~ 68 (104)
T 2vim_A 16 ENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVDQNE------------------------EAAAKY 68 (104)
T ss_dssp TTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCH------------------------HHHHHT
T ss_pred hcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC---CCEEEEEeccCCH------------------------HHHHHc
Confidence 34688 9999999999999999999999999875 4899999998663 488999
Q ss_pred CCCCccEEEEECCCCcEEE
Q 008336 114 KVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 114 ~v~~~P~~~lid~~G~i~~ 132 (569)
++.++|+++++ ++|+++.
T Consensus 69 ~v~~~Pt~~~~-~~g~~~~ 86 (104)
T 2vim_A 69 SVTAMPTFVFI-KDGKEVD 86 (104)
T ss_dssp TCCSSSEEEEE-ETTEEEE
T ss_pred CCccccEEEEE-eCCcEEE
Confidence 99999998888 5888765
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-11 Score=104.79 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=57.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
|+++||+||++||++|+.+.|.|.++++++. ++.++.|+++.. .+.|+|.
T Consensus 30 ~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~~~~--------------------------~~~~~i~ 79 (135)
T 2dbc_A 30 DLWVVIHLYRSSVPMCLVVNQHLSVLARKFP----ETKFVKAIVNSC--------------------------IEHYHDN 79 (135)
T ss_dssp SCEEEEEECCTTCHHHHHHHHHHHHHHHHCS----SEEEEEECCSSS--------------------------CSSCCSS
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHHCC----CcEEEEEEhhcC--------------------------cccCCCC
Confidence 6899999999999999999999999988874 377777776643 1579999
Q ss_pred CccEEEEECCCCcEEEccc
Q 008336 437 GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~ 455 (569)
++||+++++ +|+++.+..
T Consensus 80 ~~Pt~~~~~-~G~~v~~~~ 97 (135)
T 2dbc_A 80 CLPTIFVYK-NGQIEGKFI 97 (135)
T ss_dssp CCSEEEEES-SSSCSEEEE
T ss_pred CCCEEEEEE-CCEEEEEEE
Confidence 999999995 999887743
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-11 Score=101.66 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=59.4
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.++++.+. ++.++.|+++... .+++.|++
T Consensus 18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~------------------------~l~~~~~v 70 (110)
T 2l6c_A 18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP---QVAISSVDSEARP------------------------ELMKELGF 70 (110)
T ss_dssp TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT---TSCEEEEEGGGCH------------------------HHHHHTTC
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC---CcEEEEEcCcCCH------------------------HHHHHcCC
Confidence 467 9999999999999999999999988864 4788888887653 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 71 ~~~Pt~~~~-~~G~~v~ 86 (110)
T 2l6c_A 71 ERVPTLVFI-RDGKVAK 86 (110)
T ss_dssp CSSCEEEEE-ESSSEEE
T ss_pred cccCEEEEE-ECCEEEE
Confidence 999999999 8898875
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.9e-11 Score=112.97 Aligned_cols=85 Identities=31% Similarity=0.572 Sum_probs=67.6
Q ss_pred CceecCCCceeecC-CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCccc
Q 008336 21 DFLIRSNGDQVKLD-SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAV 98 (569)
Q Consensus 21 df~~~~~g~~v~l~-~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 98 (569)
.....++.+.+... .-.++ ++|+|||+||++|+.+.|.|.++++++++ ++.++.|+++.+.
T Consensus 12 ~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~--------------- 74 (222)
T 3dxb_A 12 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNP--------------- 74 (222)
T ss_dssp CCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCT---------------
T ss_pred CCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCCCH---------------
Confidence 33445555555432 22577 99999999999999999999999999875 3899999998653
Q ss_pred ccCCchhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 99 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 99 ~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|+|.++|+++++ ++|+++.
T Consensus 75 ---------~l~~~~~v~~~Pt~~~~-~~G~~~~ 98 (222)
T 3dxb_A 75 ---------GTAPKYGIRGIPTLLLF-KNGEVAA 98 (222)
T ss_dssp ---------TTGGGGTCCSBSEEEEE-ETTEEEE
T ss_pred ---------HHHHHcCCCcCCEEEEE-ECCeEEE
Confidence 37789999999999999 5788765
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.1e-11 Score=99.19 Aligned_cols=68 Identities=26% Similarity=0.575 Sum_probs=59.7
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.|+ ++|+||++||++|+.+.|.+.+++++++ ++.++.|+++... .+++.|+|
T Consensus 25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~~~~------------------------~~~~~~~v 77 (112)
T 1syr_A 25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEVS------------------------EVTEKENI 77 (112)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTTH------------------------HHHHHTTC
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC---CCEEEEEECCCCH------------------------HHHHHcCC
Confidence 578 9999999999999999999999999875 3899999998663 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 78 ~~~Pt~~~~-~~G~~~~ 93 (112)
T 1syr_A 78 TSMPTFKVY-KNGSSVD 93 (112)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CcccEEEEE-ECCcEEE
Confidence 999998887 6888765
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-12 Score=117.02 Aligned_cols=80 Identities=29% Similarity=0.511 Sum_probs=61.5
Q ss_pred ceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHH
Q 008336 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (569)
Q Consensus 29 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (569)
+.++++..+|| +||+|||+||++|+.+.|.|.++.+.+.. ++.++.|+++.+.+
T Consensus 37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~--~~~~~~v~~d~~~~----------------------- 91 (164)
T 1sen_A 37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISEL--SHNFVMVNLEDEEE----------------------- 91 (164)
T ss_dssp HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH--HTTSEEEEEEGGGS-----------------------
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc--CCeEEEEEecCCch-----------------------
Confidence 55666667899 99999999999999999999997765543 25577777764421
Q ss_pred HHHHhcCC--CCccEEEEECCCCcEEEc
Q 008336 108 KLDELFKV--MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 108 ~l~~~~~v--~~~P~~~lid~~G~i~~~ 133 (569)
.+...|++ .++|+++++|++|+++.+
T Consensus 92 ~~~~~~~~~~~~~Pt~~~~d~~G~~~~~ 119 (164)
T 1sen_A 92 PKDEDFSPDGGYIPRILFLDPSGKVHPE 119 (164)
T ss_dssp CSCGGGCTTCSCSSEEEEECTTSCBCTT
T ss_pred HHHHHhcccCCcCCeEEEECCCCCEEEE
Confidence 13456777 669999999999998764
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.18 E-value=6.6e-12 Score=110.59 Aligned_cols=100 Identities=13% Similarity=0.128 Sum_probs=66.4
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHH--HHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHH
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVY--NELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~--~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (569)
..+...|| |||+|||+||++|+.+.|.+.+.. .++.+ ..++.|++|.+.. .
T Consensus 38 ~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~---~~fv~V~vD~e~~-----------------------~ 91 (151)
T 3ph9_A 38 FYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ---NKFIMLNLMHETT-----------------------D 91 (151)
T ss_dssp HHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH---HTCEEEEESSCCS-----------------------C
T ss_pred HHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh---cCeEEEEecCCch-----------------------h
Confidence 33444689 999999999999999999998642 22221 1255556653211 1
Q ss_pred HHHhcCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHH
Q 008336 109 LDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQE 161 (569)
Q Consensus 109 l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 161 (569)
+...|++.++||++++|++|+++.+. +..++...+.+....+.++++..
T Consensus 92 ~~~~~~v~~~PT~~f~~~~G~~v~~~----~G~~~~~~~~~~~~~~~~ll~~~ 140 (151)
T 3ph9_A 92 KNLSPDGQYVPRIMFVDPSLTVRADI----AGRYSNRLYTYEPRDLPLLIENM 140 (151)
T ss_dssp GGGCTTCCCSSEEEEECTTSCBCTTC----CCSCTTSTTCCCGGGHHHHHHHH
T ss_pred hHhhcCCCCCCEEEEECCCCCEEEEE----eCCcCCcccccchhhHHHHHHHH
Confidence 34678999999999999999988642 22334444556666666666543
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.18 E-value=8.1e-11 Score=99.72 Aligned_cols=69 Identities=30% Similarity=0.675 Sum_probs=60.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.+++++++. ++.++.|+++.+. .+++.|+|
T Consensus 29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~------------------------~~~~~~~i 82 (121)
T 2i1u_A 29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLDVDTNP------------------------ETARNFQV 82 (121)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCCH------------------------HHHHhcCC
Confidence 477 99999999999999999999999999864 4899999998763 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 83 ~~~Pt~~~~-~~g~~~~ 98 (121)
T 2i1u_A 83 VSIPTLILF-KDGQPVK 98 (121)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CcCCEEEEE-ECCEEEE
Confidence 999999988 5888765
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.2e-11 Score=101.18 Aligned_cols=73 Identities=16% Similarity=0.399 Sum_probs=57.5
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.|+ ++|+|||+|||+|+++.|.|.++++++. ..++.++++...+ .+....+++.|+|
T Consensus 28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~----~~v~~~~~~~~~~------------------~~~~~~~~~~~~i 85 (118)
T 1zma_A 28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETK----AHIYFINSEEPSQ------------------LNDLQAFRSRYGI 85 (118)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC----CCCEEEETTCGGG------------------HHHHHHHHHHHTC
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHhcC----CeEEEEECCCcCc------------------HHHHHHHHHHcCC
Confidence 478 9999999999999999999999999875 3466777764321 1122468899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 86 ~~~Pt~~~~-~~G~~~~ 101 (118)
T 1zma_A 86 PTVPGFVHI-TDGQINV 101 (118)
T ss_dssp CSSCEEEEE-ETTEEEE
T ss_pred CCCCeEEEE-ECCEEEE
Confidence 999999999 5888764
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-12 Score=111.16 Aligned_cols=79 Identities=27% Similarity=0.465 Sum_probs=65.3
Q ss_pred CceeecCCCCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCc
Q 008336 28 GDQVKLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (569)
Q Consensus 28 g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (569)
.+.++++..+|| +||+|||+||++|+.+.|.+ .++.+.+.. ++.++.|+++.+..
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~------------------- 67 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA--RFVVASVSVDTPEG------------------- 67 (130)
Confidence 667888888999 99999999999999999999 888877653 47788887753321
Q ss_pred hhHHHHHHhcCCCCccEEEEECC-CCcE
Q 008336 104 ETRDKLDELFKVMGIPHLVILDE-NGKV 130 (569)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~-~G~i 130 (569)
..+++.|+|.++|+++++|+ +|++
T Consensus 68 ---~~~~~~~~v~~~Pt~~~~d~~~G~~ 92 (130)
T 2lst_A 68 ---QELARRYRVPGTPTFVFLVPKAGAW 92 (130)
Confidence 35889999999999999995 5877
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.5e-11 Score=98.95 Aligned_cols=72 Identities=31% Similarity=0.612 Sum_probs=62.2
Q ss_pred CCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 34 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
+...|+ ++|+||++||++|+.+.|.+.++++++. ++.++.|+++... .+++.
T Consensus 22 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~------------------------~~~~~ 74 (113)
T 1ti3_A 22 GKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELK------------------------AVAEE 74 (113)
T ss_dssp HTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCH------------------------HHHHH
T ss_pred hhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC---CcEEEEEEccccH------------------------HHHHh
Confidence 344688 9999999999999999999999999875 4999999998663 48889
Q ss_pred cCCCCccEEEEECCCCcEEEc
Q 008336 113 FKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i~~~ 133 (569)
|++.++|+++++ ++|+++.+
T Consensus 75 ~~v~~~Pt~~~~-~~G~~~~~ 94 (113)
T 1ti3_A 75 WNVEAMPTFIFL-KDGKLVDK 94 (113)
T ss_dssp HHCSSTTEEEEE-ETTEEEEE
T ss_pred CCCCcccEEEEE-eCCEEEEE
Confidence 999999999998 68988753
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.2e-11 Score=97.11 Aligned_cols=74 Identities=9% Similarity=0.192 Sum_probs=63.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+|+|+|||+|+.+.|.++++++. . ++.++.|.+|..++ ...+++..|+|+
T Consensus 24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~--~---~v~~~~vdVde~r~-------------------~Sn~IA~~~~V~ 79 (112)
T 3iv4_A 24 NKYVFVLKHSETCPISANAYDQFNKFLYE--R---DMDGYYLIVQQERD-------------------LSDYIAKKTNVK 79 (112)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHH--H---TCCEEEEEGGGGHH-------------------HHHHHHHHHTCC
T ss_pred CCCEEEEEECCcCHhHHHHHHHHHHHhcc--C---CceEEEEEeecCch-------------------hhHHHHHHhCCc
Confidence 68999999999999999999999998874 3 48899999886642 234689999999
Q ss_pred C-ccEEEEECCCCcEEEccc
Q 008336 437 G-IPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 437 ~-~Pt~~lid~~G~i~~~~~ 455 (569)
+ .|+++++ ++|+++++..
T Consensus 80 h~sPq~il~-k~G~~v~~~S 98 (112)
T 3iv4_A 80 HESPQAFYF-VNGEMVWNRD 98 (112)
T ss_dssp CCSSEEEEE-ETTEEEEEEE
T ss_pred cCCCeEEEE-ECCEEEEEee
Confidence 5 9999999 8999999853
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-12 Score=110.27 Aligned_cols=71 Identities=28% Similarity=0.590 Sum_probs=61.1
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.|.+++++++ ++.++.|++|... .+++.|+|
T Consensus 35 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~~-----------------------~~~~~~~v 87 (130)
T 1wmj_A 35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP----GAVFLKVDVDELK-----------------------EVAEKYNV 87 (130)
T ss_dssp TTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT----TBCCEECCTTTSG-----------------------GGHHHHTC
T ss_pred cCCEEEEEEECCCChhHHHHHHHHHHHHHHCC----CCEEEEEeccchH-----------------------HHHHHcCC
Confidence 48999999999999999999999999998875 3778888777554 47889999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++||++++ ++|+++.+.
T Consensus 88 ~~~Pt~~~~-~~g~~~~~~ 105 (130)
T 1wmj_A 88 EAMPTFLFI-KDGAEADKV 105 (130)
T ss_dssp CSSCCCCBC-TTTTCCBCC
T ss_pred CccceEEEE-eCCeEEEEE
Confidence 999999888 899987763
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-11 Score=102.82 Aligned_cols=70 Identities=23% Similarity=0.570 Sum_probs=61.2
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.++++.+... ++.++.|+++... .+++.|++
T Consensus 32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~v~~~~vd~d~~~------------------------~~~~~~~v 86 (121)
T 2j23_A 32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD-KVGFYKVDVDEQS------------------------QIAQEVGI 86 (121)
T ss_dssp SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH-HSEEEEEETTTCH------------------------HHHHHHTC
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC-cEEEEEEECcCCH------------------------HHHHHcCC
Confidence 578 999999999999999999999999888754 3899999998763 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 87 ~~~Pt~~~~-~~G~~~~ 102 (121)
T 2j23_A 87 RAMPTFVFF-KNGQKID 102 (121)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CcccEEEEE-ECCeEEe
Confidence 999999998 5888765
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-10 Score=98.62 Aligned_cols=68 Identities=29% Similarity=0.664 Sum_probs=60.1
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.+++++++ ++.++.|+++... .+++.|++
T Consensus 27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~------------------------~~~~~~~v 79 (118)
T 2vm1_A 27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDELK------------------------DVAEAYNV 79 (118)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSH------------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CcEEEEEEcccCH------------------------HHHHHcCC
Confidence 478 9999999999999999999999999885 4889999998653 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 80 ~~~Pt~~~~-~~g~~~~ 95 (118)
T 2vm1_A 80 EAMPTFLFI-KDGEKVD 95 (118)
T ss_dssp CSBSEEEEE-ETTEEEE
T ss_pred CcCcEEEEE-eCCeEEE
Confidence 999999888 7898775
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-11 Score=106.07 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=58.2
Q ss_pred cEEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCc
Q 008336 39 KIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (569)
Q Consensus 39 kvlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (569)
.++|+|||+||++|+.+.|.|.+++++++ +.++.|+++..... . ..+....+++.|+|.++
T Consensus 33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----v~~~~vd~~~~~~~--~-------------~~d~~~~l~~~~~v~~~ 93 (135)
T 3emx_A 33 DAILAVYSKTCPHCHRDWPQLIQASKEVD----VPIVMFIWGSLIGE--R-------------ELSAARLEMNKAGVEGT 93 (135)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHTTCC----SCEEEEEECTTCCH--H-------------HHHHHHHHHHHHTCCSS
T ss_pred cEEEEEECCcCHhhhHhChhHHHHHHHCC----CEEEEEECCCchhh--h-------------hhhhhHHHHHHcCCcee
Confidence 48999999999999999999999998874 67888888543211 0 01122468899999999
Q ss_pred cEEEEECCCCcEEEc
Q 008336 119 PHLVILDENGKVLSD 133 (569)
Q Consensus 119 P~~~lid~~G~i~~~ 133 (569)
||+++++ +|+++.+
T Consensus 94 Pt~~~~~-~G~~v~~ 107 (135)
T 3emx_A 94 PTLVFYK-EGRIVDK 107 (135)
T ss_dssp SEEEEEE-TTEEEEE
T ss_pred CeEEEEc-CCEEEEE
Confidence 9988886 8988763
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.5e-11 Score=105.68 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=65.1
Q ss_pred CceeecCCCCCc-EEEEEecCCCHhhHhhHHH---HHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCc
Q 008336 28 GDQVKLDSLKGK-IGLYFSASWCGPCQRFTPI---LAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (569)
Q Consensus 28 g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~---l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (569)
.+.+..+..+|| |||+|||+||++|+.+.|+ ..++++.+.+ ++.++.|+.+..++....|..
T Consensus 29 ~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~--~fv~ikVD~de~~~l~~~y~~------------ 94 (173)
T 3ira_A 29 EEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE--AFVSIKVDREERPDIDNIYMT------------ 94 (173)
T ss_dssp HHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH--HCEEEEEETTTCHHHHHHHHH------------
T ss_pred HHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHh--cCceeeeCCcccCcHHHHHHH------------
Confidence 345566666799 9999999999999999883 2455565543 378888888877664444421
Q ss_pred hhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 104 ETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
.+...+++.++|++++++++|+++..
T Consensus 95 ----~~q~~~gv~g~Pt~v~l~~dG~~v~~ 120 (173)
T 3ira_A 95 ----VCQIILGRGGWPLNIIMTPGKKPFFA 120 (173)
T ss_dssp ----HHHHHHSCCCSSEEEEECTTSCEEEE
T ss_pred ----HHHHHcCCCCCcceeeECCCCCceee
Confidence 12233699999999999999999875
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.5e-12 Score=104.95 Aligned_cols=73 Identities=19% Similarity=0.315 Sum_probs=52.4
Q ss_pred ceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHH
Q 008336 349 KVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 428 (569)
Q Consensus 349 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 428 (569)
.+++++..+|+++|+|||+||++|+.+.|.|.++++++ ..|-+..|... +...+
T Consensus 4 ~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~-------~~v~~~~~~~~-------------------~~~~~ 57 (106)
T 3kp8_A 4 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV-------PYVECSPNGPG-------------------TPQAQ 57 (106)
T ss_dssp HHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGS-------CEEESCTTCTT-------------------SCCCH
T ss_pred hhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhC-------CEEEEeccccc-------------------chhHH
Confidence 34556666888999999999999999999998877544 22333322110 01246
Q ss_pred HHHhcCCCCccEEEEECCCCcE
Q 008336 429 LSRKFKVSGIPMLVAIGPSGRT 450 (569)
Q Consensus 429 l~~~~~v~~~Pt~~lid~~G~i 450 (569)
+++.|+|+++||+++ +|+.
T Consensus 58 l~~~~~V~~~PT~~i---~G~~ 76 (106)
T 3kp8_A 58 ECTEAGITSYPTWII---NGRT 76 (106)
T ss_dssp HHHHTTCCSSSEEEE---TTEE
T ss_pred HHHHcCCeEeCEEEE---CCEE
Confidence 899999999999777 7764
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=115.21 Aligned_cols=70 Identities=26% Similarity=0.525 Sum_probs=60.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
++++||+|||+||++|+.+.|.|.++++++++. +.|+.|++|.+. ...+++.|+|.
T Consensus 35 ~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~---~~~~~v~~d~~~---------------------~~~l~~~~~I~ 90 (298)
T 3ed3_A 35 NYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV---VQVAAVNCDLNK---------------------NKALCAKYDVN 90 (298)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTSTT---------------------THHHHHHTTCC
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC---cEEEEEEccCcc---------------------CHHHHHhCCCC
Confidence 789999999999999999999999999999764 899999998543 24689999999
Q ss_pred CccEEEEECCCCcEE
Q 008336 437 GIPMLVAIGPSGRTI 451 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~ 451 (569)
++||+++++. |+++
T Consensus 91 ~~Pt~~~~~~-g~~v 104 (298)
T 3ed3_A 91 GFPTLMVFRP-PKID 104 (298)
T ss_dssp BSSEEEEEEC-CCC-
T ss_pred ccceEEEEEC-Ccee
Confidence 9999999964 5543
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=103.52 Aligned_cols=90 Identities=22% Similarity=0.283 Sum_probs=67.2
Q ss_pred cccCccCCceecCCCceeec--CCCCCc-EEEEEec-------CCCHhhHhhHHHHHHHHHHhcCC---CCEEEEEEeCC
Q 008336 14 LLSSSARDFLIRSNGDQVKL--DSLKGK-IGLYFSA-------SWCGPCQRFTPILAEVYNELSRQ---GDFEVIFVSGD 80 (569)
Q Consensus 14 ~~g~~~pdf~~~~~g~~v~l--~~~~gk-vlv~F~a-------~wC~~C~~~~p~l~~~~~~~~~~---g~~~vv~v~~d 80 (569)
++....++-++.++...+.. ..-++. |||+||| +||++|+.+.|.|.++++++... +++.++.|++|
T Consensus 11 l~~l~~~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d 90 (178)
T 3ga4_A 11 ILQLKDDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVN 90 (178)
T ss_dssp HHTTCCTTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT
T ss_pred HHHhhccCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECc
Confidence 33333345555555544432 222455 9999999 49999999999999999998621 46999999999
Q ss_pred CCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCC
Q 008336 81 EDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN 127 (569)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~ 127 (569)
.++ .++..|+|+++||++++.+.
T Consensus 91 ~~~------------------------~la~~~~I~siPtl~~F~~g 113 (178)
T 3ga4_A 91 EVP------------------------QLVKDLKLQNVPHLVVYPPA 113 (178)
T ss_dssp TCH------------------------HHHHHTTCCSSCEEEEECCC
T ss_pred cCH------------------------HHHHHcCCCCCCEEEEEcCC
Confidence 875 48999999999999999443
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.3e-12 Score=104.64 Aligned_cols=71 Identities=25% Similarity=0.595 Sum_probs=61.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.+++++++++++ +.++.|++|.+. .+++.|++.
T Consensus 19 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v~ 72 (106)
T 2yj7_A 19 DKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK---VKVVKVNVDENP-----------------------NTAAQYGIR 72 (106)
Confidence 789999999999999999999999999988653 777777776543 478899999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++|+++++ ++|+++.+.
T Consensus 73 ~~Pt~~~~-~~g~~~~~~ 89 (106)
T 2yj7_A 73 SIPTLLLF-KNGQVVDRL 89 (106)
Confidence 99999999 899987763
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.1e-12 Score=104.63 Aligned_cols=73 Identities=18% Similarity=0.388 Sum_probs=53.3
Q ss_pred ceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHH
Q 008336 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (569)
Q Consensus 29 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (569)
+.+++++..|+ ++|+|||+|||+|+++.|.|.++++++. .|+++.+.. .+...
T Consensus 3 ~~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~--------~v~~~~~~~------------------~~~~~ 56 (106)
T 3kp8_A 3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP--------YVECSPNGP------------------GTPQA 56 (106)
T ss_dssp HHHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC--------EEESCTTCT------------------TSCCC
T ss_pred HhhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC--------EEEEecccc------------------cchhH
Confidence 45667777889 9999999999999999999999986653 334441100 00113
Q ss_pred HHHHhcCCCCccEEEEECCCCcE
Q 008336 108 KLDELFKVMGIPHLVILDENGKV 130 (569)
Q Consensus 108 ~l~~~~~v~~~P~~~lid~~G~i 130 (569)
.+++.|+|+++||+++ +|+.
T Consensus 57 ~l~~~~~V~~~PT~~i---~G~~ 76 (106)
T 3kp8_A 57 QECTEAGITSYPTWII---NGRT 76 (106)
T ss_dssp HHHHHTTCCSSSEEEE---TTEE
T ss_pred HHHHHcCCeEeCEEEE---CCEE
Confidence 6899999999999766 6764
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=99.90 Aligned_cols=88 Identities=14% Similarity=0.166 Sum_probs=65.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+|+ ++|+|||+||++|+.+.|.|.++++++. ++.++.|+++.. .+.|+|
T Consensus 29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~~~~---------------------------~~~~~i 78 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP---ETKFVKAIVNSC---------------------------IEHYHD 78 (135)
T ss_dssp SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS---SEEEEEECCSSS---------------------------CSSCCS
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC---CcEEEEEEhhcC---------------------------cccCCC
Confidence 468 9999999999999999999999999874 488888888753 157999
Q ss_pred CCccEEEEECCCCcEEEcC-CcceeecccCCCCCccHHHHHHHHHH
Q 008336 116 MGIPHLVILDENGKVLSDG-GVEIIREYGVEGYPFTVERIKEMKEQ 160 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (569)
.++||+++++ +|+++.+. |.. .++. ..++.+.++.+++.
T Consensus 79 ~~~Pt~~~~~-~G~~v~~~~G~~---~~~~--~~~~~~~l~~~l~~ 118 (135)
T 2dbc_A 79 NCLPTIFVYK-NGQIEGKFIGII---ECGG--INLKLEELEWKLSE 118 (135)
T ss_dssp SCCSEEEEES-SSSCSEEEESTT---TTTC--TTCCHHHHHHHHHH
T ss_pred CCCCEEEEEE-CCEEEEEEEeEE---eeCC--CcCCHHHHHHHHHH
Confidence 9999999995 88776531 111 1111 13466777776654
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-10 Score=103.19 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=58.4
Q ss_pred CCCEEEEEEec-------CCChhHHhhhHHHHHHHHHHhhcC--CCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhh
Q 008336 356 AGKTILLYFSA-------HWCPPCRAFLPKLIDAYKKIKERN--ESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARK 426 (569)
Q Consensus 356 ~gk~vll~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~--~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~ 426 (569)
++.+|||+||| +||++|+.+.|.|+++++++.... +++.++.|++|.++
T Consensus 36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~---------------------- 93 (178)
T 3ga4_A 36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVP---------------------- 93 (178)
T ss_dssp TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCH----------------------
T ss_pred CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCH----------------------
Confidence 45689999999 499999999999999999997221 24888888888765
Q ss_pred HHHHHhcCCCCccEEEEECCCC
Q 008336 427 ASLSRKFKVSGIPMLVAIGPSG 448 (569)
Q Consensus 427 ~~l~~~~~v~~~Pt~~lid~~G 448 (569)
++++.|+|+++||++++.+.+
T Consensus 94 -~la~~~~I~siPtl~~F~~g~ 114 (178)
T 3ga4_A 94 -QLVKDLKLQNVPHLVVYPPAE 114 (178)
T ss_dssp -HHHHHTTCCSSCEEEEECCCC
T ss_pred -HHHHHcCCCCCCEEEEEcCCC
Confidence 589999999999999995443
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-11 Score=102.29 Aligned_cols=69 Identities=28% Similarity=0.601 Sum_probs=58.7
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
+++ ++|+||++||++|+.+.|.+.++++.++..+ ++.++.|+++.+. .+++.|+
T Consensus 23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------------~~~~~~~ 78 (120)
T 1mek_A 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES------------------------DLAQQYG 78 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC------------------------SSHHHHT
T ss_pred cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCH------------------------HHHHHCC
Confidence 578 9999999999999999999999999987653 5788888887542 4788899
Q ss_pred CCCccEEEEECCCCcE
Q 008336 115 VMGIPHLVILDENGKV 130 (569)
Q Consensus 115 v~~~P~~~lid~~G~i 130 (569)
+.++|+++++ ++|++
T Consensus 79 v~~~Pt~~~~-~~g~~ 93 (120)
T 1mek_A 79 VRGYPTIKFF-RNGDT 93 (120)
T ss_dssp CCSSSEEEEE-ESSCS
T ss_pred CCcccEEEEE-eCCCc
Confidence 9999999999 67764
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-11 Score=103.51 Aligned_cols=81 Identities=30% Similarity=0.566 Sum_probs=60.5
Q ss_pred cCCCceeecC-CCCCc-EEEEEecCCCH--------------hhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHH
Q 008336 25 RSNGDQVKLD-SLKGK-IGLYFSASWCG--------------PCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 88 (569)
Q Consensus 25 ~~~g~~v~l~-~~~gk-vlv~F~a~wC~--------------~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~ 88 (569)
.++++.+... .-.|| ++|+|||+||+ +|+.+.|.+.++++++++ ++.++.|++|.+.
T Consensus 7 ~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~--~~~~~~vd~d~~~----- 79 (123)
T 1oaz_A 7 HLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNP----- 79 (123)
T ss_dssp ECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC---------CEEEEEETTSCT-----
T ss_pred ecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC--CeEEEEEECCCCH-----
Confidence 3444444322 22578 99999999999 999999999999998864 4899999998653
Q ss_pred HHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 89 YFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|+|.++|+++++ ++|+++.
T Consensus 80 -------------------~l~~~~~v~~~Pt~~~~-~~G~~~~ 103 (123)
T 1oaz_A 80 -------------------GTAPKYGIRGIPTLLLF-KNGEVAA 103 (123)
T ss_dssp -------------------TTGGGGTCCBSSEEEEE-ESSSEEE
T ss_pred -------------------HHHHHcCCCccCEEEEE-ECCEEEE
Confidence 47889999999999999 8998875
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.6e-10 Score=115.42 Aligned_cols=178 Identities=11% Similarity=0.141 Sum_probs=111.4
Q ss_pred eecCCCceeeeccccCcEEEEEEecCCcccchh---hh---HHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCC
Q 008336 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAE---FT---PRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMP 255 (569)
Q Consensus 182 ~~~~~~~~~~~~~~~gk~v~l~f~~~~~~~c~~---~~---~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~ 255 (569)
++..+.+++.....+++.+++.|+++||++|.. +. |.+.+++..+++. . +.++.+|.++
T Consensus 15 v~~lt~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~--~--v~~~~Vd~~~----------- 79 (367)
T 3us3_A 15 VINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK--G--VGFGLVDSEK----------- 79 (367)
T ss_dssp CEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTT--T--EEEEEEETTT-----------
T ss_pred cEECCHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcC--C--ceEEEEeCcc-----------
Confidence 444444444432245689999999999999632 22 5788888888643 2 5566666554
Q ss_pred cccccCCchhHHHHHhhcccCCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhc
Q 008336 256 WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLV 335 (569)
Q Consensus 256 ~~~~~~~d~~~~~l~~~f~v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 335 (569)
.+.+++.|+|+++||++++. +|+... +.| +.+.+.+.+++..... +...
T Consensus 80 ----------~~~l~~~~~V~~~PTl~~f~-~G~~~~--------y~G----~~~~~~i~~~i~~~~~----~~v~---- 128 (367)
T 3us3_A 80 ----------DAAVAKKLGLTEEDSIYVFK-EDEVIE--------YDG----EFSADTLVEFLLDVLE----DPVE---- 128 (367)
T ss_dssp ----------THHHHHHHTCCSTTEEEEEE-TTEEEE--------CCS----CCSHHHHHHHHHHHHS----CSEE----
T ss_pred ----------cHHHHHHcCCCcCceEEEEE-CCcEEE--------eCC----CCCHHHHHHHHHHhcC----CCcE----
Confidence 56899999999999999997 454321 112 4577787777764321 1100
Q ss_pred cCCccceec-C-CCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVVG-K-NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~~-~-~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
.+. . +-+.+ +. ...++++|.|+++||. ...+.+.+++..+++. +.+..++ +.
T Consensus 129 ------~i~~~~~~~~~-~~-~~~~~~vv~ff~~~~~---~~~~~f~~~A~~~~~~---~~F~~~~---~~--------- 182 (367)
T 3us3_A 129 ------LIEGERELQAF-EN-IEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHPY---IPFFATF---DS--------- 182 (367)
T ss_dssp ------ECCSHHHHHHH-HH-CCSSCEEEEECSCTTC---HHHHHHHHHHHHHTTT---SCEEEEC---CH---------
T ss_pred ------EcCCHHHHHHH-hc-cCCCcEEEEEECCCCc---hHHHHHHHHHHhhcCC---cEEEEEC---CH---------
Confidence 010 0 00011 11 0146788999999876 4566788888888754 5554442 22
Q ss_pred CCCcccccCchhhHHHHHhcCCCCccEEEEECC
Q 008336 414 MPWLALPFGDARKASLSRKFKVSGIPMLVAIGP 446 (569)
Q Consensus 414 ~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~ 446 (569)
.+++.|+++. |+++++.+
T Consensus 183 --------------~~~~~~~v~~-p~i~lf~~ 200 (367)
T 3us3_A 183 --------------KVAKKLTLKL-NEIDFYEA 200 (367)
T ss_dssp --------------HHHHHHTCCT-TCEEEECT
T ss_pred --------------HHHHHcCCCC-CeEEEEcC
Confidence 4788899985 99999965
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=99.11 E-value=6e-11 Score=113.07 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
++++|||+||++||++|+.+.|.|.+++++++ ++.++.|+++. . .++..|+|
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~----~v~f~kVd~d~-~-----------------------~l~~~~~I 183 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP----MVKFCKIKASN-T-----------------------GAGDRFSS 183 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT----TSEEEEEEHHH-H-----------------------CCTTSSCT
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC----CCEEEEEeCCc-H-----------------------HHHHHCCC
Confidence 48999999999999999999999999999885 37888887653 1 25778999
Q ss_pred CCccEEEEECCCCcEEEccc
Q 008336 436 SGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~~ 455 (569)
.++||++++ ++|+++.+..
T Consensus 184 ~~~PTll~~-~~G~~v~~~v 202 (245)
T 1a0r_P 184 DVLPTLLVY-KGGELLSNFI 202 (245)
T ss_dssp TTCSEEEEE-ETTEEEEEET
T ss_pred CCCCEEEEE-ECCEEEEEEe
Confidence 999999999 5999988743
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-11 Score=101.71 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=55.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
...+||+|||+||++|+.+.+.+...++.... ...+.|+.|+++.+.. ..++..|+|.
T Consensus 18 ~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~-~~~~~l~~vdv~~~~~---------------------~~la~~~~V~ 75 (116)
T 3dml_A 18 AELRLLMFEQPGCLYCARWDAEIAPQYPLTDE-GRAAPVQRLQMRDPLP---------------------PGLELARPVT 75 (116)
T ss_dssp -CEEEEEEECTTCHHHHHHHHHTTTTGGGSHH-HHHSCEEEEETTSCCC---------------------TTCBCSSCCC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhhHHHhhh-cccceEEEEECCCCCc---------------------hhHHHHCCCC
Confidence 46899999999999999998766544332110 0126788888886531 2467789999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||+++++ +|+.+.+-
T Consensus 76 g~PT~i~f~-~G~ev~Ri 92 (116)
T 3dml_A 76 FTPTFVLMA-GDVESGRL 92 (116)
T ss_dssp SSSEEEEEE-TTEEEEEE
T ss_pred CCCEEEEEE-CCEEEeee
Confidence 999999997 99999983
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-10 Score=117.87 Aligned_cols=165 Identities=16% Similarity=0.221 Sum_probs=106.3
Q ss_pred ccCcEEEEEEecCCcccchhhhHH-------HHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHH
Q 008336 195 LEGKTIGLYFSMSSYKASAEFTPR-------LVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE 267 (569)
Q Consensus 195 ~~gk~v~l~f~~~~~~~c~~~~~~-------~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~ 267 (569)
.+++.+++.|+++||+ |+.+.|. +.++++.+++. . +.++.+|.+. ..
T Consensus 26 ~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~--~--v~~~~Vd~~~---------------------~~ 79 (350)
T 1sji_A 26 KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHK--D--IGFVMVDAKK---------------------EA 79 (350)
T ss_dssp TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGS--S--EEEEEEETTT---------------------TH
T ss_pred hhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhc--C--cEEEEEeCCC---------------------CH
Confidence 3568999999999999 9999998 88888888654 2 5555555543 45
Q ss_pred HHHhhcccCCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCccceecCCC
Q 008336 268 KLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNG 347 (569)
Q Consensus 268 ~l~~~f~v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~~~g 347 (569)
.+++.|+|.++||++++. +|+.. ...| +.+.+.+.++...... +... .++ +.
T Consensus 80 ~l~~~~~v~~~Pt~~~~~-~g~~~--------~~~G----~~~~~~l~~~i~~~~~----~~~~----------~l~-~~ 131 (350)
T 1sji_A 80 KLAKKLGFDEEGSLYVLK-GDRTI--------EFDG----EFAADVLVEFLLDLIE----DPVE----------IIN-SK 131 (350)
T ss_dssp HHHHHHTCCSTTEEEEEE-TTEEE--------EECS----CCCHHHHHHHHHTTSS----CSEE----------ECC-SH
T ss_pred HHHHhcCCCccceEEEEE-CCcEE--------EecC----CCCHHHHHHHHHHhcC----Ccce----------ecc-ch
Confidence 789999999999999994 45422 1112 3466666665542111 0000 010 00
Q ss_pred Ccee-cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhh
Q 008336 348 GKVP-VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARK 426 (569)
Q Consensus 348 ~~v~-l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~ 426 (569)
+.+. +-....+.++|.|+++||.+ ..+.+.++++.++++ +.+..++ ++
T Consensus 132 ~~~~~~~~~~~~~~vv~ff~~~~~~---~~~~~~~~A~~~~~~---~~f~~~~---~~---------------------- 180 (350)
T 1sji_A 132 LEVQAFERIEDQIKLIGFFKSEESE---YYKAFEEAAEHFQPY---IKFFATF---DK---------------------- 180 (350)
T ss_dssp HHHHHHHHCCSSCEEEEECSCTTSH---HHHHHHHHHHHTTTT---SEEEEEC---CH----------------------
T ss_pred HHHHHHhccCCCcEEEEEECCCCcH---HHHHHHHHHHhhccC---cEEEEEC---CH----------------------
Confidence 0000 00012456788899998754 457788888888654 6655542 22
Q ss_pred HHHHHhcCCCCccEEEEECC
Q 008336 427 ASLSRKFKVSGIPMLVAIGP 446 (569)
Q Consensus 427 ~~l~~~~~v~~~Pt~~lid~ 446 (569)
++++.|++. .|+++++.+
T Consensus 181 -~~~~~~~v~-~p~i~~~~~ 198 (350)
T 1sji_A 181 -GVAKKLSLK-MNEVDFYEP 198 (350)
T ss_dssp -HHHHHHTCC-TTCEEEECT
T ss_pred -HHHHHcCCC-CCcEEEEeC
Confidence 478899999 999999976
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=92.04 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=54.2
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
+++.||++||++|+.+.|.+.++++++++ ++.++.|+++.+. .+++.|++.++|
T Consensus 4 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~~~P 57 (85)
T 1nho_A 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDR------------------------EKAIEYGLMAVP 57 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEEECTTTCG------------------------GGGGGTCSSCSS
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--CeEEEEEECCCCH------------------------HHHHhCCceeeC
Confidence 57899999999999999999999999874 4889999988653 477899999999
Q ss_pred EEEEECCCCcE
Q 008336 120 HLVILDENGKV 130 (569)
Q Consensus 120 ~~~lid~~G~i 130 (569)
++++ +|++
T Consensus 58 t~~~---~G~~ 65 (85)
T 1nho_A 58 AIAI---NGVV 65 (85)
T ss_dssp EEEE---TTTE
T ss_pred EEEE---CCEE
Confidence 9988 7876
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=91.41 Aligned_cols=62 Identities=27% Similarity=0.480 Sum_probs=54.3
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
+++.||++||++|+.+.|.|.++++++++ ++.++.|+++.+. .+++.|++.++|
T Consensus 5 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~~~P 58 (85)
T 1fo5_A 5 KIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENP------------------------QKAMEYGIMAVP 58 (85)
T ss_dssp EEEEEECCCSSCCCTHHHHHHHHHHHCSS--SEEEEEEESSSSC------------------------CTTTSTTTCCSS
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHcCC--ceEEEEEECCCCH------------------------HHHHHCCCcccC
Confidence 78999999999999999999999999863 5999999998652 367889999999
Q ss_pred EEEEECCCCcE
Q 008336 120 HLVILDENGKV 130 (569)
Q Consensus 120 ~~~lid~~G~i 130 (569)
++++ +|++
T Consensus 59 t~~~---~G~~ 66 (85)
T 1fo5_A 59 TIVI---NGDV 66 (85)
T ss_dssp EEEE---TTEE
T ss_pred EEEE---CCEE
Confidence 9988 7876
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-10 Score=98.52 Aligned_cols=77 Identities=25% Similarity=0.491 Sum_probs=59.7
Q ss_pred CCCCc-EEEEEecC-------CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhH
Q 008336 35 SLKGK-IGLYFSAS-------WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETR 106 (569)
Q Consensus 35 ~~~gk-vlv~F~a~-------wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (569)
+..|+ ++|+|||+ ||++|+.+.|.|.++++++++ ++.++.|+++... .| . +..
T Consensus 21 ~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~--~~~~~~vd~~~~~-~~---~-------------d~~ 81 (123)
T 1wou_A 21 QHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE--GCVFIYCQVGEKP-YW---K-------------DPN 81 (123)
T ss_dssp TTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT--TEEEEEEECCCHH-HH---H-------------CTT
T ss_pred HhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC--CcEEEEEECCCch-hh---h-------------chh
Confidence 33588 99999999 999999999999999988864 4999999996421 11 0 011
Q ss_pred HHHHHhcCCCCccEEEEECCCCcE
Q 008336 107 DKLDELFKVMGIPHLVILDENGKV 130 (569)
Q Consensus 107 ~~l~~~~~v~~~P~~~lid~~G~i 130 (569)
..+++.|+|.++||+++++..+++
T Consensus 82 ~~~~~~~~i~~~Pt~~~~~~~~~~ 105 (123)
T 1wou_A 82 NDFRKNLKVTAVPTLLKYGTPQKL 105 (123)
T ss_dssp CHHHHHHCCCSSSEEEETTSSCEE
T ss_pred HHHHHHCCCCeeCEEEEEcCCceE
Confidence 358888999999999999764433
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-10 Score=117.11 Aligned_cols=73 Identities=21% Similarity=0.442 Sum_probs=62.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcC---CCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERN---ESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~---~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
+++++|+|||+||++|+++.|.|.++++.+++.. .++.++.|+++... .+++.|
T Consensus 22 ~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~-----------------------~l~~~~ 78 (382)
T 2r2j_A 22 ADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHS-----------------------DIAQRY 78 (382)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCH-----------------------HHHHHT
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccH-----------------------HHHHhc
Confidence 7899999999999999999999999999996431 24788888877654 589999
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 434 KVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~ 453 (569)
+|+++||++++ ++|+++.+
T Consensus 79 ~v~~~Pt~~~f-~~G~~~~~ 97 (382)
T 2r2j_A 79 RISKYPTLKLF-RNGMMMKR 97 (382)
T ss_dssp TCCEESEEEEE-ETTEEEEE
T ss_pred CCCcCCEEEEE-eCCcEeee
Confidence 99999999999 68887753
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=6.6e-10 Score=85.80 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=51.4
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
.|+||++||++|+.+.|.+.++++++.. ++.++.|+ + ..+++.|+|.++|+
T Consensus 3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~--~~~~~~v~---~------------------------~~~~~~~~v~~~Pt 53 (77)
T 1ilo_A 3 KIQIYGTGCANCQMLEKNAREAVKELGI--DAEFEKIK---E------------------------MDQILEAGLTALPG 53 (77)
T ss_dssp EEEEECSSSSTTHHHHHHHHHHHHHTTC--CEEEEEEC---S------------------------HHHHHHHTCSSSSC
T ss_pred EEEEEcCCChhHHHHHHHHHHHHHHcCC--ceEEEEec---C------------------------HHHHHHCCCCcCCE
Confidence 5899999999999999999999998863 47777776 2 25788999999999
Q ss_pred EEEECCCCcEEEc
Q 008336 121 LVILDENGKVLSD 133 (569)
Q Consensus 121 ~~lid~~G~i~~~ 133 (569)
+++ +|+++..
T Consensus 54 ~~~---~G~~~~~ 63 (77)
T 1ilo_A 54 LAV---DGELKIM 63 (77)
T ss_dssp EEE---TTEEEEC
T ss_pred EEE---CCEEEEc
Confidence 988 7888764
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=7.5e-10 Score=114.49 Aligned_cols=82 Identities=15% Similarity=0.219 Sum_probs=64.6
Q ss_pred ecCCCceeec--CCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC------CEEEEEEeCCCCHHHHHHHHHhCC
Q 008336 24 IRSNGDQVKL--DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG------DFEVIFVSGDEDDEAFKGYFSKMP 94 (569)
Q Consensus 24 ~~~~g~~v~l--~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g------~~~vv~v~~d~~~~~~~~~~~~~~ 94 (569)
..++.+.+.. ..-.++ +||+|||+||++|+.+.|.+.++++++.... ++.++.|+++...
T Consensus 26 ~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~----------- 94 (470)
T 3qcp_A 26 VDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEV----------- 94 (470)
T ss_dssp EECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCH-----------
T ss_pred EECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCH-----------
Confidence 3444444432 222347 9999999999999999999999999997442 4899999999764
Q ss_pred CcccccCCchhHHHHHHhcCCCCccEEEEECCCCc
Q 008336 95 WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGK 129 (569)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~ 129 (569)
.+++.|+|.++||+++++++|.
T Consensus 95 -------------~la~~y~V~~~PTlilf~~gg~ 116 (470)
T 3qcp_A 95 -------------DLCRKYDINFVPRLFFFYPRDS 116 (470)
T ss_dssp -------------HHHHHTTCCSSCEEEEEEESSC
T ss_pred -------------HHHHHcCCCccCeEEEEECCCc
Confidence 4899999999999999976553
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-10 Score=109.51 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=66.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ |||+|||+||++|+.+.|.|.++++++. ++.++.|+++. . .++..|+|
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~---~v~f~kVd~d~--~-----------------------~l~~~~~I 183 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP---MVKFCKIKASN--T-----------------------GAGDRFSS 183 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT---TSEEEEEEHHH--H-----------------------CCTTSSCT
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC---CCEEEEEeCCc--H-----------------------HHHHHCCC
Confidence 478 9999999999999999999999999985 37888887753 1 25678999
Q ss_pred CCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHH
Q 008336 116 MGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (569)
.++||++++ ++|+++...... ...+ +-.++...+..++..
T Consensus 184 ~~~PTll~~-~~G~~v~~~vG~--~~~~--g~~~~~e~Le~~L~~ 223 (245)
T 1a0r_P 184 DVLPTLLVY-KGGELLSNFISV--TEQL--AEEFFTGDVESFLNE 223 (245)
T ss_dssp TTCSEEEEE-ETTEEEEEETTG--GGGS--CTTCCHHHHHHHHHT
T ss_pred CCCCEEEEE-ECCEEEEEEeCC--cccc--cccccHHHHHHHHHH
Confidence 999999998 589887642110 0111 113566677766643
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.5e-10 Score=86.27 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=52.1
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcc
Q 008336 360 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP 439 (569)
Q Consensus 360 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P 439 (569)
+.|.||++||++|+.+.|.|++++++++.+ +.++.|+ +. ++++.|+|+++|
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~---~~~~~v~---~~-----------------------~~~~~~~v~~~P 52 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGID---AEFEKIK---EM-----------------------DQILEAGLTALP 52 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTCC---EEEEEEC---SH-----------------------HHHHHHTCSSSS
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCCc---eEEEEec---CH-----------------------HHHHHCCCCcCC
Confidence 468999999999999999999999888643 6777665 22 478899999999
Q ss_pred EEEEECCCCcEEEc
Q 008336 440 MLVAIGPSGRTITK 453 (569)
Q Consensus 440 t~~lid~~G~i~~~ 453 (569)
|+++ +|+++.+
T Consensus 53 t~~~---~G~~~~~ 63 (77)
T 1ilo_A 53 GLAV---DGELKIM 63 (77)
T ss_dssp CEEE---TTEEEEC
T ss_pred EEEE---CCEEEEc
Confidence 9998 8998876
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.2e-10 Score=90.78 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=60.9
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+|+|+|||+|+...|.|.++++. . ++.++.|++|..++. ...++..|+|+
T Consensus 24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~-~---~v~~~~vdVde~r~~--------------------Sn~IA~~~~V~ 79 (112)
T 3iv4_A 24 NKYVFVLKHSETCPISANAYDQFNKFLYE-R---DMDGYYLIVQQERDL--------------------SDYIAKKTNVK 79 (112)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHH-H---TCCEEEEEGGGGHHH--------------------HHHHHHHHTCC
T ss_pred CCCEEEEEECCcCHhHHHHHHHHHHHhcc-C---CceEEEEEeecCchh--------------------hHHHHHHhCCc
Confidence 67 99999999999999999999999874 2 488999999976541 12589999999
Q ss_pred C-ccEEEEECCCCcEEEcC
Q 008336 117 G-IPHLVILDENGKVLSDG 134 (569)
Q Consensus 117 ~-~P~~~lid~~G~i~~~~ 134 (569)
+ .|+++++ ++|+++...
T Consensus 80 h~sPq~il~-k~G~~v~~~ 97 (112)
T 3iv4_A 80 HESPQAFYF-VNGEMVWNR 97 (112)
T ss_dssp CCSSEEEEE-ETTEEEEEE
T ss_pred cCCCeEEEE-ECCEEEEEe
Confidence 5 9999999 899998763
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-10 Score=107.76 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=60.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
+|++|||+||++||++|+.+.|.|.++++++. ++.++.|+++ ++ .++..|+|
T Consensus 119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~----~v~f~~vd~~-~~-----------------------~l~~~~~i 170 (217)
T 2trc_P 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP----MVKFCKIRAS-NT-----------------------GAGDRFSS 170 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT----TSEEEEEEHH-HH-----------------------TCSTTSCG
T ss_pred CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC----CeEEEEEECC-cH-----------------------HHHHHCCC
Confidence 46999999999999999999999999988874 4788888776 22 36788999
Q ss_pred CCccEEEEECCCCcEEEccc
Q 008336 436 SGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~~ 455 (569)
.++||++++ ++|+++.+..
T Consensus 171 ~~~PTl~~~-~~G~~v~~~~ 189 (217)
T 2trc_P 171 DVLPTLLVY-KGGELISNFI 189 (217)
T ss_dssp GGCSEEEEE-ETTEEEEEET
T ss_pred CCCCEEEEE-ECCEEEEEEe
Confidence 999999999 6999987643
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-10 Score=118.79 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=59.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCC-----CeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNE-----SLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~-----~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
+|++||+|||+||++|+.+.|.|.+++++++.+.. .+.++.|++|..+ ++++
T Consensus 42 ~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~-----------------------~la~ 98 (470)
T 3qcp_A 42 LCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEV-----------------------DLCR 98 (470)
T ss_dssp GSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCH-----------------------HHHH
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCH-----------------------HHHH
Confidence 58999999999999999999999999999874321 4888999888664 5899
Q ss_pred hcCCCCccEEEEECCCCc
Q 008336 432 KFKVSGIPMLVAIGPSGR 449 (569)
Q Consensus 432 ~~~v~~~Pt~~lid~~G~ 449 (569)
.|+|.++||+++|+++|.
T Consensus 99 ~y~V~~~PTlilf~~gg~ 116 (470)
T 3qcp_A 99 KYDINFVPRLFFFYPRDS 116 (470)
T ss_dssp HTTCCSSCEEEEEEESSC
T ss_pred HcCCCccCeEEEEECCCc
Confidence 999999999999976553
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.3e-11 Score=100.24 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=52.4
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
+||+|||+||++|+.+.+.+...++.......+.++.|+++.+.. ..++..|+|.++|
T Consensus 21 ~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~----------------------~~la~~~~V~g~P 78 (116)
T 3dml_A 21 RLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLP----------------------PGLELARPVTFTP 78 (116)
T ss_dssp EEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCC----------------------TTCBCSSCCCSSS
T ss_pred EEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCc----------------------hhHHHHCCCCCCC
Confidence 999999999999999987665443321100026688888886521 2366789999999
Q ss_pred EEEEECCCCcEEEc
Q 008336 120 HLVILDENGKVLSD 133 (569)
Q Consensus 120 ~~~lid~~G~i~~~ 133 (569)
|+++++ +|+.+.+
T Consensus 79 T~i~f~-~G~ev~R 91 (116)
T 3dml_A 79 TFVLMA-GDVESGR 91 (116)
T ss_dssp EEEEEE-TTEEEEE
T ss_pred EEEEEE-CCEEEee
Confidence 999997 8988763
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.00 E-value=7.6e-09 Score=109.76 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC----CccEEEEECCCCc
Q 008336 55 FTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM----GIPHLVILDENGK 129 (569)
Q Consensus 55 ~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~----~~P~~~lid~~G~ 129 (569)
....+.+++++++.++ .+.++.++.+... ...+.||+. ..|.+++++.++.
T Consensus 255 ~~~~~~~vA~~~~~k~~~i~F~~~D~~~~~------------------------~~l~~~gl~~~~~~~P~~~i~~~~~~ 310 (481)
T 3f8u_A 255 WRNRVMMVAKKFLDAGHKLNFAVASRKTFS------------------------HELSDFGLESTAGEIPVVAIRTAKGE 310 (481)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEETTTTH------------------------HHHGGGTCCCCTTCSCEEEEECSSSC
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEcHHHHH------------------------HHHHHcCCCcccCCCcEEEEEcCCCc
Confidence 4667888888887652 3777777766542 356788887 6899999986664
Q ss_pred EEEcCCcceeecccCCCCCccHH--HHHHHHHHHHHHHhhcccccccccCCC-----ceeecCCCceeeecc-ccCcEEE
Q 008336 130 VLSDGGVEIIREYGVEGYPFTVE--RIKEMKEQEERAKREQSLRSVLTSHSR-----DFVISSDGRKISVSD-LEGKTIG 201 (569)
Q Consensus 130 i~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~l~~~~~~~~~-----d~~~~~~~~~~~~~~-~~gk~v~ 201 (569)
..... -.++.+ .|.+++...... .+...+.+... ..+...+++.+.... .+++.++
T Consensus 311 ky~~~------------~~~t~e~~~l~~f~~~~~~g----~~~~~~~s~~~p~~~~~~v~~~~~~~~~~~~~~~~k~vl 374 (481)
T 3f8u_A 311 KFVMQ------------EEFSRDGKALERFLQDYFDG----NLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVL 374 (481)
T ss_dssp EEECC------------SCCCTTSHHHHHHHHHHHHT----CCCCCCCCCCCCSCCCSSSEEECTTTHHHHHTCTTCEEE
T ss_pred ccCCC------------cccCccHHHHHHHHHHHhcC----CcccccccCCCCCCCCCCeEEecccCHHHHhhcCCCcEE
Confidence 33211 134555 777777654332 22222222211 112223333333222 2589999
Q ss_pred EEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccCCCceE
Q 008336 202 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 281 (569)
Q Consensus 202 l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~~~Ptl 281 (569)
++|+++||++|+.+.|.+.++++.+.... . ++++.+|.+. . .+++.|+|.++||+
T Consensus 375 v~f~a~wC~~C~~~~p~~~~l~~~~~~~~-~--v~~~~id~~~---------------------~-~~~~~~~v~~~Pt~ 429 (481)
T 3f8u_A 375 IEFYAPWCGHCKNLEPKYKELGEKLSKDP-N--IVIAKMDATA---------------------N-DVPSPYEVRGFPTI 429 (481)
T ss_dssp EEEECTTBHHHHHHHHHHHHHHHHTTTCS-S--EEEEEEETTS---------------------S-CCCTTCCCCSSSEE
T ss_pred EEEecCcChhHHHhhHHHHHHHHHhccCC-C--EEEEEEECCc---------------------h-hhHhhCCCcccCEE
Confidence 99999999999999999999999987642 3 5555555442 1 34578999999999
Q ss_pred EEECCCCC
Q 008336 282 VIIGPDGK 289 (569)
Q Consensus 282 vi~~~~g~ 289 (569)
+++..+++
T Consensus 430 ~~~~~~~~ 437 (481)
T 3f8u_A 430 YFSPANKK 437 (481)
T ss_dssp EEECTTCT
T ss_pred EEEeCCCe
Confidence 99987776
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-09 Score=115.78 Aligned_cols=69 Identities=22% Similarity=0.501 Sum_probs=60.6
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+|||+||++|+++.|.|.++++.+++. ++.++.|+++..+ .+++.|+|
T Consensus 30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~--~v~~~~vd~~~~~-----------------------~l~~~~~v 84 (504)
T 2b5e_A 30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK--NITLAQIDCTENQ-----------------------DLCMEHNI 84 (504)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT--TCEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccC--CeEEEEEECCCCH-----------------------HHHHhcCC
Confidence 4789999999999999999999999999999764 5889999888764 58999999
Q ss_pred CCccEEEEECCCCcE
Q 008336 436 SGIPMLVAIGPSGRT 450 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i 450 (569)
+++||++++. +|+.
T Consensus 85 ~~~Pt~~~~~-~g~~ 98 (504)
T 2b5e_A 85 PGFPSLKIFK-NSDV 98 (504)
T ss_dssp CSSSEEEEEE-TTCT
T ss_pred CcCCEEEEEe-CCcc
Confidence 9999999994 5663
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.9e-10 Score=105.91 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=66.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+|+ |+|+|||+||++|+.+.|.|.++++++. ++.++.|+++ + ..++..|+|
T Consensus 119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~---~v~f~~vd~~-~------------------------~~l~~~~~i 170 (217)
T 2trc_P 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCKIRAS-N------------------------TGAGDRFSS 170 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT---TSEEEEEEHH-H------------------------HTCSTTSCG
T ss_pred CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC---CeEEEEEECC-c------------------------HHHHHHCCC
Confidence 468 9999999999999999999999999884 4888888876 2 136678999
Q ss_pred CCccEEEEECCCCcEEEc-CCcceeecccCCCCCccHHHHHHHHH
Q 008336 116 MGIPHLVILDENGKVLSD-GGVEIIREYGVEGYPFTVERIKEMKE 159 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (569)
.++||++++ ++|+++.. .|.. ..+ +..++.+.+..++.
T Consensus 171 ~~~PTl~~~-~~G~~v~~~~G~~---~~~--g~~~~~~~Le~~L~ 209 (217)
T 2trc_P 171 DVLPTLLVY-KGGELISNFISVA---EQF--AEDFFAADVESFLN 209 (217)
T ss_dssp GGCSEEEEE-ETTEEEEEETTGG---GGS--CSSCCHHHHHHHHH
T ss_pred CCCCEEEEE-ECCEEEEEEeCCc---ccC--cccCCHHHHHHHHH
Confidence 999999999 58988753 2211 111 12355567766654
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.7e-10 Score=98.59 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=50.2
Q ss_pred Cc-EEEEEecCC--CHhhHhhHHHHHHHHHHhcCCCCEE--EEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 38 GK-IGLYFSASW--CGPCQRFTPILAEVYNELSRQGDFE--VIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 38 gk-vlv~F~a~w--C~~C~~~~p~l~~~~~~~~~~g~~~--vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
++ ++|+||++| |++|+.+.|.|.++++++ + ++. ++.|++|.. ..+++.
T Consensus 34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~--~v~~~~~~Vd~d~~------------------------~~la~~ 86 (142)
T 2es7_A 34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P--QFDWQVAVADLEQS------------------------EAIGDR 86 (142)
T ss_dssp CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T--TSCCEEEEECHHHH------------------------HHHHHT
T ss_pred CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c--ccceeEEEEECCCC------------------------HHHHHh
Confidence 45 888999887 999999999999999998 3 467 888887743 358899
Q ss_pred cCCCCccEEEEECCCCcEEE
Q 008336 113 FKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i~~ 132 (569)
|+|+++||++++ ++|+++.
T Consensus 87 ~~V~~iPT~~~f-k~G~~v~ 105 (142)
T 2es7_A 87 FNVRRFPATLVF-TDGKLRG 105 (142)
T ss_dssp TTCCSSSEEEEE-SCC----
T ss_pred cCCCcCCeEEEE-eCCEEEE
Confidence 999999999999 8998875
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.47 E-value=9.6e-11 Score=96.43 Aligned_cols=69 Identities=32% Similarity=0.684 Sum_probs=58.7
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.+.++++++.. ++.++.|+++.+. .+++.|++
T Consensus 18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~------------------------~~~~~~~v 71 (106)
T 2yj7_A 18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG--KVKVVKVNVDENP------------------------NTAAQYGI 71 (106)
Confidence 467 99999999999999999999999998864 4778888777542 47889999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 72 ~~~Pt~~~~-~~g~~~~ 87 (106)
T 2yj7_A 72 RSIPTLLLF-KNGQVVD 87 (106)
Confidence 999999999 7888765
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-10 Score=99.95 Aligned_cols=71 Identities=28% Similarity=0.594 Sum_probs=59.8
Q ss_pred CCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 34 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
+...++ ++|+||++||++|+.+.|.|.+++++++ ++.++.|+++... .+++.
T Consensus 32 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~------------------------~~~~~ 84 (130)
T 1wmj_A 32 AKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFLKVDVDELK------------------------EVAEK 84 (130)
T ss_dssp HHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT---TBCCEECCTTTSG------------------------GGHHH
T ss_pred HhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CCEEEEEeccchH------------------------HHHHH
Confidence 334688 9999999999999999999999999885 3788888887542 47889
Q ss_pred cCCCCccEEEEECCCCcEEE
Q 008336 113 FKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i~~ 132 (569)
|++.++|+++++ ++|+++.
T Consensus 85 ~~v~~~Pt~~~~-~~g~~~~ 103 (130)
T 1wmj_A 85 YNVEAMPTFLFI-KDGAEAD 103 (130)
T ss_dssp HTCCSSCCCCBC-TTTTCCB
T ss_pred cCCCccceEEEE-eCCeEEE
Confidence 999999998887 7888764
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.88 E-value=4.6e-09 Score=92.42 Aligned_cols=73 Identities=12% Similarity=0.247 Sum_probs=55.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
+|+|+|+|+++||.+|+.+.... .++.+.+.+. +.++.++++.. + ...+.+.|
T Consensus 42 ~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~---fv~v~~d~~~~-~--------------------~~~l~~~y 97 (153)
T 2dlx_A 42 NKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSE-E--------------------GQRYIQFY 97 (153)
T ss_dssp TCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSH-H--------------------HHHHHHHH
T ss_pred CCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcC---eEEEEEecCCH-h--------------------HHHHHHHc
Confidence 89999999999999999987654 4445555443 77777766532 1 34678899
Q ss_pred CCCCccEEEEECCC-CcEEEc
Q 008336 434 KVSGIPMLVAIGPS-GRTITK 453 (569)
Q Consensus 434 ~v~~~Pt~~lid~~-G~i~~~ 453 (569)
++.++|++++||++ |+.+.+
T Consensus 98 ~v~~~P~~~fld~~~G~~l~~ 118 (153)
T 2dlx_A 98 KLGDFPYVSILDPRTGQKLVE 118 (153)
T ss_dssp TCCSSSEEEEECTTTCCCCEE
T ss_pred CCCCCCEEEEEeCCCCcEeee
Confidence 99999999999998 866554
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=98.84 E-value=8e-09 Score=97.98 Aligned_cols=192 Identities=14% Similarity=0.114 Sum_probs=124.6
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
.+ ++|-|+++|| ..+.+.+.++++.+. ++.+... .+ ..+++.|++.
T Consensus 27 ~~v~vVgff~~~~---~~~~~~f~~~A~~l~---~~~F~~t-~~--------------------------~~v~~~~~v~ 73 (227)
T 4f9z_D 27 TEVAVIGFFQDLE---IPAVPILHSMVQKFP---GVSFGIS-TD--------------------------SEVLTHYNIT 73 (227)
T ss_dssp SSEEEEEECSCSC---STHHHHHHHHTTTCT---TSEEEEE-CC--------------------------HHHHHHTTCC
T ss_pred CCeEEEEEecCCC---chhHHHHHHHHHhCC---CceEEEE-CC--------------------------HHHHHHcCCC
Confidence 45 8889999985 578899999999883 3555432 22 2488899999
Q ss_pred CccEEEEECCCC-cEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCceeeeccc
Q 008336 117 GIPHLVILDENG-KVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDL 195 (569)
Q Consensus 117 ~~P~~~lid~~G-~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~ 195 (569)
+ |+++++.+.. +....++ .+. .+++.+.|..++ ..+..+++...+.+++...-.
T Consensus 74 ~-p~i~lfk~~~~~~~~~~~-----~~~---g~~~~~~l~~fi----------------~~~~~plv~e~t~~n~~~~~~ 128 (227)
T 4f9z_D 74 G-NTICLFRLVDNEQLNLED-----EDI---ESIDATKLSRFI----------------EINSLHMVTEYNPVTVIGLFN 128 (227)
T ss_dssp S-SEEEEEETTTTEEEEECH-----HHH---HTCCHHHHHHHH----------------HHHCCCSEEECCHHHHHHHHH
T ss_pred C-CeEEEEEecCcccccccc-----ccc---CCCCHHHHHHHH----------------HHhCCCceeecCcccHHHHhc
Confidence 8 9999985422 1111110 000 023444555444 333455565555554433222
Q ss_pred cC-cEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcc
Q 008336 196 EG-KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (569)
Q Consensus 196 ~g-k~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~ 274 (569)
.+ +.++++|..+||+.|..+.+.+.+++++++++ +.|+.+|.+... +++++++||
T Consensus 129 ~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~-----i~F~~vd~~~~~-------------------~~~~l~~fg 184 (227)
T 4f9z_D 129 SVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGK-----ILFILVDSGMKE-------------------NGKVISFFK 184 (227)
T ss_dssp SSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTT-----CEEEEEETTSGG-------------------GHHHHHHTT
T ss_pred cCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCC-----EEEEEeCCccHh-------------------HHHHHHHcC
Confidence 33 55667788889999999999999999999875 566666654211 456789999
Q ss_pred cC--CCceEEEECCCCC--chhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHH
Q 008336 275 LS--TLPTLVIIGPDGK--TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRA 323 (569)
Q Consensus 275 v~--~~Ptlvi~~~~g~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 323 (569)
+. ++|++++++..+. +.... -.++.+.+.+|.....+
T Consensus 185 l~~~~~P~~~i~~~~~~~ky~~~~------------~~~t~~~i~~Fv~~~~~ 225 (227)
T 4f9z_D 185 LKESQLPALAIYQTLDDEWDTLPT------------AEVSVEHVQNFCDGFLS 225 (227)
T ss_dssp CCGGGCSEEEEEESSSCCEEEETT------------CCCCHHHHHHHHHHHHT
T ss_pred CCcccCCEEEEEECCCCccccCCc------------CCCCHHHHHHHHHHHhC
Confidence 98 7999999985443 22111 14789999999887654
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-08 Score=82.48 Aligned_cols=65 Identities=22% Similarity=0.408 Sum_probs=54.4
Q ss_pred EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCc
Q 008336 359 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 438 (569)
Q Consensus 359 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~ 438 (569)
.+|+.||++||++|+...+.|.++.+++ ++.+..|++|.++ +++..|+++ +
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~-----~i~~~~vDId~d~-----------------------~l~~~ygv~-V 80 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKS-----WFELEVINIDGNE-----------------------HLTRLYNDR-V 80 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHS-----CCCCEEEETTTCH-----------------------HHHHHSTTS-C
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhc-----CCeEEEEECCCCH-----------------------HHHHHhCCC-C
Confidence 5789999999999999999999988776 3677888888775 377889997 9
Q ss_pred cEEEEECCCCcEEEc
Q 008336 439 PMLVAIGPSGRTITK 453 (569)
Q Consensus 439 Pt~~lid~~G~i~~~ 453 (569)
|+++++ .+|+.+..
T Consensus 81 P~l~~~-~dG~~v~~ 94 (107)
T 2fgx_A 81 PVLFAV-NEDKELCH 94 (107)
T ss_dssp SEEEET-TTTEEEEC
T ss_pred ceEEEE-ECCEEEEe
Confidence 999888 67888743
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.75 E-value=6.5e-09 Score=95.99 Aligned_cols=117 Identities=20% Similarity=0.277 Sum_probs=69.8
Q ss_pred HHHHHhhcccCCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCC-ccceec
Q 008336 266 REKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGD-LDFVVG 344 (569)
Q Consensus 266 ~~~l~~~f~v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~f~~~ 344 (569)
....++.+||.++|++++ +|++..... +++.+.++.|.+.... ..+.+.+...+.. ..++.+
T Consensus 39 ~~~~a~~~gi~gvP~fvi---ngk~~~~~~------------~~~~~~~~~f~~~~~~--l~~~L~s~~~p~~~~~~~~g 101 (197)
T 1un2_A 39 QEKAAADVQLRGVPAMFV---NGKYQLNPQ------------GMDTSNMDVFVQQYAD--TVKYLSEKKGGGTGAQYEDG 101 (197)
T ss_dssp HHHHHHHTTCCSSSEEEE---TTTEEECGG------------GSCCSSHHHHHHHHHH--HHHHHTC---------CCBT
T ss_pred HHHHHHHcCCCcCCEEEE---cceEecCcc------------ccccccHHHHHHHHHH--HHHHHHhCcccccccccCCC
Confidence 456789999999999976 455432211 2233445544443333 3333433332221 122223
Q ss_pred CCCCceecccCCCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCC
Q 008336 345 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRD 403 (569)
Q Consensus 345 ~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~ 403 (569)
.+...+... ..++++||.||+.|||||+++.|.| .++.++++++ +.+..+.++..
T Consensus 102 ~~y~~l~~p-~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~---v~~~~~~v~~~ 159 (197)
T 1un2_A 102 KQYTTLEKP-VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEG---VKMTKYHVNFM 159 (197)
T ss_dssp TTEEECSSC-CTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTT---CCEEEEECSSS
T ss_pred CCceEccCC-CCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCC---CEEEEeccCcC
Confidence 333333211 2368999999999999999999998 8888888654 88888888754
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=80.10 Aligned_cols=58 Identities=22% Similarity=0.415 Sum_probs=45.9
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.||++||++|+.+.|.|.++..++ +..|++|.++ ++++.|+++ +|+
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~--------~~~vdid~~~-----------------------~l~~~~g~~-vPt 50 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA--------FFSVFIDDDA-----------------------ALESAYGLR-VPV 50 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC--------EEEEECTTCH-----------------------HHHHHHTTT-CSE
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh--------eEEEECCCCH-----------------------HHHHHhCCC-cCe
Confidence 68899999999999999886543221 4567888765 478889998 999
Q ss_pred EEEECCCCcEEE
Q 008336 441 LVAIGPSGRTIT 452 (569)
Q Consensus 441 ~~lid~~G~i~~ 452 (569)
+++ .+|+.+.
T Consensus 51 l~~--~~G~~v~ 60 (87)
T 1ttz_A 51 LRD--PMGRELD 60 (87)
T ss_dssp EEC--TTCCEEE
T ss_pred EEE--ECCEEEe
Confidence 988 6788874
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-08 Score=87.96 Aligned_cols=67 Identities=9% Similarity=0.109 Sum_probs=58.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++|+|+||++ |++|+.+.|.|.+++++++++ +.++.|++|..+ .++..|||+
T Consensus 23 ~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk---~~f~~vd~d~~~-----------------------~~a~~~gi~ 75 (133)
T 2djk_A 23 GIPLAYIFAET-AEERKELSDKLKPIAEAQRGV---INFGTIDAKAFG-----------------------AHAGNLNLK 75 (133)
T ss_dssp TSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT---SEEEEECTTTTG-----------------------GGTTTTTCC
T ss_pred CCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe---EEEEEEchHHhH-----------------------HHHHHcCCC
Confidence 57899999999 899999999999999999875 889999888664 478899999
Q ss_pred C--ccEEEEECC-CCcE
Q 008336 437 G--IPMLVAIGP-SGRT 450 (569)
Q Consensus 437 ~--~Pt~~lid~-~G~i 450 (569)
+ +||+++++. +|+.
T Consensus 76 ~~~iPtl~i~~~~~g~~ 92 (133)
T 2djk_A 76 TDKFPAFAIQEVAKNQK 92 (133)
T ss_dssp SSSSSEEEEECTTTCCB
T ss_pred cccCCEEEEEecCcCcc
Confidence 9 999999964 4665
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.1e-08 Score=81.10 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=52.8
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
+++.||++||++|+...|.|.++++++. +.+..|+++.+++ +...|+++ +|
T Consensus 31 ~vv~y~~~~C~~C~~a~~~L~~l~~e~~----i~~~~vDId~d~~------------------------l~~~ygv~-VP 81 (107)
T 2fgx_A 31 KLVVYGREGCHLCEEMIASLRVLQKKSW----FELEVINIDGNEH------------------------LTRLYNDR-VP 81 (107)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHHHHSC----CCCEEEETTTCHH------------------------HHHHSTTS-CS
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHHhcC----CeEEEEECCCCHH------------------------HHHHhCCC-Cc
Confidence 7899999999999999999999988852 7788889987754 77789997 99
Q ss_pred EEEEECCCCcEE
Q 008336 120 HLVILDENGKVL 131 (569)
Q Consensus 120 ~~~lid~~G~i~ 131 (569)
+++++ .+|+.+
T Consensus 82 ~l~~~-~dG~~v 92 (107)
T 2fgx_A 82 VLFAV-NEDKEL 92 (107)
T ss_dssp EEEET-TTTEEE
T ss_pred eEEEE-ECCEEE
Confidence 99877 578776
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.8e-08 Score=90.88 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=38.3
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d 401 (569)
.++++|+.||++|||+|+++.|.|.++.+++.++ +.++.+.++
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQD---VVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEECC
T ss_pred CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCC---eEEEEEecc
Confidence 4799999999999999999999999998888654 888888886
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3e-08 Score=78.29 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=45.8
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.||++||++|+...|.|.++..++ +..|++|.+++ +...|+++ +|+
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~-------~~~vdid~~~~------------------------l~~~~g~~-vPt 50 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA-------FFSVFIDDDAA------------------------LESAYGLR-VPV 50 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC-------EEEEECTTCHH------------------------HHHHHTTT-CSE
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh-------eEEEECCCCHH------------------------HHHHhCCC-cCe
Confidence 68899999999999999988764321 46788887754 77889998 999
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
+++ .+|+.+
T Consensus 51 l~~--~~G~~v 59 (87)
T 1ttz_A 51 LRD--PMGREL 59 (87)
T ss_dssp EEC--TTCCEE
T ss_pred EEE--ECCEEE
Confidence 887 678776
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=98.71 E-value=6.4e-09 Score=89.73 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=80.6
Q ss_pred cCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhccc
Q 008336 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (569)
Q Consensus 196 ~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v 275 (569)
.+.+++++|+++ |++|+.+.|.+.+++++++++ +.|+.+|.++ ...++++|||
T Consensus 22 ~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk-----~~f~~vd~d~---------------------~~~~a~~~gi 74 (133)
T 2djk_A 22 AGIPLAYIFAET-AEERKELSDKLKPIAEAQRGV-----INFGTIDAKA---------------------FGAHAGNLNL 74 (133)
T ss_dssp TTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT-----SEEEEECTTT---------------------TGGGTTTTTC
T ss_pred CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe-----EEEEEEchHH---------------------hHHHHHHcCC
Confidence 446788999999 899999999999999988765 5566665543 4567899999
Q ss_pred CC--CceEEEECC-CCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccC
Q 008336 276 ST--LPTLVIIGP-DGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSG 337 (569)
Q Consensus 276 ~~--~Ptlvi~~~-~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 337 (569)
++ +||+++++. +|+..... ..-.++.+.+.++......+...+.++|+.++.
T Consensus 75 ~~~~iPtl~i~~~~~g~~~~~~----------~~g~~~~~~l~~fi~~~l~Gkl~p~~kSe~iP~ 129 (133)
T 2djk_A 75 KTDKFPAFAIQEVAKNQKFPFD----------QEKEITFEAIKAFVDDFVAGKIEPSIKSEPIPE 129 (133)
T ss_dssp CSSSSSEEEEECTTTCCBCCCC----------SSSCCCHHHHHHHHHHHHHTCCCCSSCCCCCCT
T ss_pred CcccCCEEEEEecCcCcccCCC----------CccccCHHHHHHHHHHHHcCCcCccccCCCCCC
Confidence 98 999999985 45442110 001457889999999999999999998887655
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=98.69 E-value=6.9e-08 Score=91.96 Aligned_cols=84 Identities=11% Similarity=0.138 Sum_probs=61.1
Q ss_pred cCccCCceecCCCceeecCCCCCc-EEEEEe--cCCCHhhHhhHHHHHHHHHHhcC-CCCEEEEEEeCCC-----CHHHH
Q 008336 16 SSSARDFLIRSNGDQVKLDSLKGK-IGLYFS--ASWCGPCQRFTPILAEVYNELSR-QGDFEVIFVSGDE-----DDEAF 86 (569)
Q Consensus 16 g~~~pdf~~~~~g~~v~l~~~~gk-vlv~F~--a~wC~~C~~~~p~l~~~~~~~~~-~g~~~vv~v~~d~-----~~~~~ 86 (569)
|...+...+.++...+.----.++ |||.|| ||||+ +.|.|.++++++.. .+++.|+.|+++. +
T Consensus 11 ~~~~~~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n---- 82 (248)
T 2c0g_A 11 GSVTCTGCVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELEN---- 82 (248)
T ss_dssp ----CTTCEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTT----
T ss_pred CCCCCCCcEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCccccccc----
Confidence 444444444444444432112456 999999 99999 99999999999965 3469999999886 3
Q ss_pred HHHHHhCCCcccccCCchhHHHHHHhcCCC--CccEEEEECCCCc
Q 008336 87 KGYFSKMPWLAVPFSDSETRDKLDELFKVM--GIPHLVILDENGK 129 (569)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~ 129 (569)
..++..|+|+ ++||++++ + |+
T Consensus 83 --------------------~~la~~~~V~~~~~PTl~~F-~-G~ 105 (248)
T 2c0g_A 83 --------------------KALGDRYKVDDKNFPSIFLF-K-GN 105 (248)
T ss_dssp --------------------HHHHHHTTCCTTSCCEEEEE-S-SS
T ss_pred --------------------HHHHHHhCCCcCCCCeEEEE-e-CC
Confidence 3599999999 99999999 4 76
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-07 Score=87.32 Aligned_cols=91 Identities=21% Similarity=0.335 Sum_probs=59.4
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC---Ch----------------hHHHHHHh
Q 008336 352 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQ----------------TSFDEFFK 412 (569)
Q Consensus 352 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~---~~----------------~~~~~~~~ 412 (569)
+....+|++|+.||++|||+|+++.|.|.++.+. ++.|+.+.... .+ ..+.+++.
T Consensus 81 ~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~------~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~ 154 (216)
T 1eej_A 81 YKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL------GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMA 154 (216)
T ss_dssp ECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT------TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHT
T ss_pred ecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhC------CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHh
Confidence 3344589999999999999999999999887542 37777765531 11 12333333
Q ss_pred cCCCc--ccccCchhhHHHHHhcCCCCccEEEEECCCCcE
Q 008336 413 GMPWL--ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRT 450 (569)
Q Consensus 413 ~~~~~--~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i 450 (569)
..+.. ......+....+++.|||+++||+++. +|..
T Consensus 155 ~~~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~--dG~~ 192 (216)
T 1eej_A 155 GKSVAPASCDVDIADHYALGVQLGVSGTPAVVLS--NGTL 192 (216)
T ss_dssp TCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEECT--TSCE
T ss_pred CCCCChhHHHHHHHHHHHHHHHcCCCccCEEEEc--CCeE
Confidence 32210 122233566788999999999999654 5654
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-07 Score=84.67 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=39.2
Q ss_pred CCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC
Q 008336 347 GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 400 (569)
Q Consensus 347 g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~ 400 (569)
+....+.+..++++|+.||.+|||+|+++.|.|.++.++++ ++.|++..+
T Consensus 12 ~~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~----~v~~~~~~~ 61 (175)
T 3gyk_A 12 PNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP----NVRLVYREW 61 (175)
T ss_dssp TTSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TEEEEEEEC
T ss_pred CCCCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCC----CEEEEEEeC
Confidence 33445555568999999999999999999999999888764 366666654
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-08 Score=78.67 Aligned_cols=65 Identities=22% Similarity=0.317 Sum_probs=48.0
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.||++|||+|+++.+.|+++.+++. +.+..+.+|.+.+ ..++++.||++++|+
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~~v~~~~~--------------------~~~~~~~~gv~~vPt 58 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPSK-----YTVEIVHLGTDKA--------------------RIAEAEKAGVKSVPA 58 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTTT-----EEEEEEETTTCSS--------------------THHHHHHHTCCEEEE
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhcC-----CeEEEEEecCChh--------------------hHHHHHHcCCCcCCE
Confidence 567999999999999999988765542 4555666664311 124678899999999
Q ss_pred EEEECCCCcEEEc
Q 008336 441 LVAIGPSGRTITK 453 (569)
Q Consensus 441 ~~lid~~G~i~~~ 453 (569)
+++ +|+++..
T Consensus 59 ~~i---~g~~~~~ 68 (80)
T 2k8s_A 59 LVI---DGAAFHI 68 (80)
T ss_dssp EEE---TTEEEEE
T ss_pred EEE---CCEEEEe
Confidence 877 7887654
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.5e-08 Score=76.76 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=46.9
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.||++|||+|+++.|.+.++.+++ ++.+..++++.+.+ ...+.+.||++++|+
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~----~~~~~~~~v~~~~~---------------------~~~~~~~~gv~~vPt 58 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPS----KYTVEIVHLGTDKA---------------------RIAEAEKAGVKSVPA 58 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTT----TEEEEEEETTTCSS---------------------THHHHHHHTCCEEEE
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhc----CCeEEEEEecCChh---------------------hHHHHHHcCCCcCCE
Confidence 57799999999999999998876553 25555666663210 024678899999999
Q ss_pred EEEECCCCcEEE
Q 008336 121 LVILDENGKVLS 132 (569)
Q Consensus 121 ~~lid~~G~i~~ 132 (569)
+++ +|+++.
T Consensus 59 ~~i---~g~~~~ 67 (80)
T 2k8s_A 59 LVI---DGAAFH 67 (80)
T ss_dssp EEE---TTEEEE
T ss_pred EEE---CCEEEE
Confidence 876 787654
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.60 E-value=8.6e-08 Score=84.26 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=54.5
Q ss_pred CCCCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHH
Q 008336 34 DSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 109 (569)
Q Consensus 34 ~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (569)
+.-.|| +||+|+++||+.|+.+.... .++.+.+.+ ++.++.++++.... ..+
T Consensus 38 Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~--~fv~v~~d~~~~~~----------------------~~l 93 (153)
T 2dlx_A 38 GQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEEG----------------------QRY 93 (153)
T ss_dssp HHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHHH----------------------HHH
T ss_pred HHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc--CeEEEEEecCCHhH----------------------HHH
Confidence 334589 99999999999999985443 333333332 47888888764221 367
Q ss_pred HHhcCCCCccEEEEECCC-CcEEE
Q 008336 110 DELFKVMGIPHLVILDEN-GKVLS 132 (569)
Q Consensus 110 ~~~~~v~~~P~~~lid~~-G~i~~ 132 (569)
.+.|++.++|+++++|++ |+.+.
T Consensus 94 ~~~y~v~~~P~~~fld~~~G~~l~ 117 (153)
T 2dlx_A 94 IQFYKLGDFPYVSILDPRTGQKLV 117 (153)
T ss_dssp HHHHTCCSSSEEEEECTTTCCCCE
T ss_pred HHHcCCCCCCEEEEEeCCCCcEee
Confidence 889999999999999998 75543
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-06 Score=92.33 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=58.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.++..++.||++||++|+.+.|.|++++..+. ++.+..|++|..+ +++..|+|
T Consensus 116 ~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~----~v~~~~vd~~~~~-----------------------~~~~~~~i 168 (521)
T 1hyu_A 116 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP----RIKHTAIDGGTFQ-----------------------NEITERNV 168 (521)
T ss_dssp CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT----TEEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCcceEEEECCCCcCcHHHHHHHHHHHhHcC----ceEEEEEechhhH-----------------------HHHHHhCC
Confidence 36788999999999999999999999887764 3888888888665 58999999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 436 SGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~ 453 (569)
+++|++++ +|+.+..
T Consensus 169 ~svPt~~i---~g~~~~~ 183 (521)
T 1hyu_A 169 MGVPAVFV---NGKEFGQ 183 (521)
T ss_dssp CSSSEEEE---TTEEEEE
T ss_pred CccCEEEE---CCEEEec
Confidence 99999977 7888765
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2.5e-07 Score=88.11 Aligned_cols=67 Identities=12% Similarity=0.205 Sum_probs=54.4
Q ss_pred CCEEEEEEe--cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC--ChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 357 GKTILLYFS--AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR--DQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 357 gk~vll~F~--a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~--~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
+++|||.|| ||||+ +.|.|.++++.++....++.|+.|++|. ..+ +.++++.
T Consensus 33 ~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~--------------------n~~la~~ 88 (248)
T 2c0g_A 33 FPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELE--------------------NKALGDR 88 (248)
T ss_dssp SSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCT--------------------THHHHHH
T ss_pred CCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccc--------------------cHHHHHH
Confidence 689999999 99998 9999999999997511358888888776 100 1359999
Q ss_pred cCCC--CccEEEEECCCCc
Q 008336 433 FKVS--GIPMLVAIGPSGR 449 (569)
Q Consensus 433 ~~v~--~~Pt~~lid~~G~ 449 (569)
|+|+ ++||++++ + |+
T Consensus 89 ~~V~~~~~PTl~~F-~-G~ 105 (248)
T 2c0g_A 89 YKVDDKNFPSIFLF-K-GN 105 (248)
T ss_dssp TTCCTTSCCEEEEE-S-SS
T ss_pred hCCCcCCCCeEEEE-e-CC
Confidence 9999 99999999 4 76
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.9e-08 Score=82.40 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=46.5
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
++++++ ||++||++|+++.|.|.++.. .+.++.|+.+.... +....+++.|++.
T Consensus 19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~~-------~~~~v~v~~~~~~~------------------~~~~~l~~~~~v~ 72 (116)
T 2e7p_A 19 SAPVVV-FSKTYCGYCNRVKQLLTQVGA-------SYKVVELDELSDGS------------------QLQSALAHWTGRG 72 (116)
T ss_dssp SSSEEE-EECTTCHHHHHHHHHHHHHTC-------CCEEEEGGGSTTHH------------------HHHHHHHHHHSCC
T ss_pred CCCEEE-EECCCChhHHHHHHHHHHcCC-------CeEEEEccCCCChH------------------HHHHHHHHHhCCC
Confidence 455666 999999999999998876532 24444444333211 1123578899999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 437 GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~ 453 (569)
++|++ ++ +|+++..
T Consensus 73 ~~Pt~-~~--~g~~v~~ 86 (116)
T 2e7p_A 73 TVPNV-FI--GGKQIGG 86 (116)
T ss_dssp SSCEE-EE--TTEEEEC
T ss_pred CcCEE-EE--CCEEECC
Confidence 99999 55 6888775
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=98.53 E-value=4.3e-07 Score=86.12 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=54.5
Q ss_pred CCc-EEEEEec--CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC---CHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 37 KGK-IGLYFSA--SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE---DDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 37 ~gk-vlv~F~a--~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
.++ |||.||| |||+ +.|.|.++++.+...+++.|+.|++|+ +.. ..++
T Consensus 21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~----------------------~~l~ 74 (240)
T 2qc7_A 21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLN----------------------MELS 74 (240)
T ss_dssp GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCS----------------------HHHH
T ss_pred CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhh----------------------HHHH
Confidence 356 9999999 9999 999999999999754469999999764 111 3599
Q ss_pred HhcCCC--CccEEEEECCCCc
Q 008336 111 ELFKVM--GIPHLVILDENGK 129 (569)
Q Consensus 111 ~~~~v~--~~P~~~lid~~G~ 129 (569)
+.|+|+ ++||++++ ++|+
T Consensus 75 ~~~~V~~~~~PTl~~f-~~G~ 94 (240)
T 2qc7_A 75 EKYKLDKESYPVFYLF-RDGD 94 (240)
T ss_dssp HHTTCCGGGCSEEEEE-ETTC
T ss_pred HHcCCCCCCCCEEEEE-eCCC
Confidence 999999 99999999 5665
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.6e-07 Score=81.91 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=41.0
Q ss_pred CCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeC
Q 008336 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79 (569)
Q Consensus 27 ~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~ 79 (569)
++....+.+..++ +|+.||.+|||+|+++.|.+.++.+++. ++.++...+
T Consensus 11 ~~~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~---~v~~~~~~~ 61 (175)
T 3gyk_A 11 DPNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP---NVRLVYREW 61 (175)
T ss_dssp CTTSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TEEEEEEEC
T ss_pred CCCCCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCC---CEEEEEEeC
Confidence 4555677778899 9999999999999999999999988754 466666654
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.5e-07 Score=85.82 Aligned_cols=92 Identities=20% Similarity=0.307 Sum_probs=59.7
Q ss_pred eecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC---CH----------------HHHHHHH
Q 008336 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE---DD----------------EAFKGYF 90 (569)
Q Consensus 31 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~---~~----------------~~~~~~~ 90 (569)
+.+....++ +++.||++|||+|+++.|.+.++.+. ++.|+.+.... .. ..+.+++
T Consensus 79 ~~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~-----~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~ 153 (216)
T 1eej_A 79 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL-----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVM 153 (216)
T ss_dssp EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred eeecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhC-----CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHH
Confidence 444555788 99999999999999999999988652 37777765531 11 2233444
Q ss_pred HhCCCccccc-CCchhHHHHHHhcCCCCccEEEEECCCCc
Q 008336 91 SKMPWLAVPF-SDSETRDKLDELFKVMGIPHLVILDENGK 129 (569)
Q Consensus 91 ~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~ 129 (569)
...+...... ...+....+++.|||+++|++++. +|.
T Consensus 154 ~~~~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~--dG~ 191 (216)
T 1eej_A 154 AGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLS--NGT 191 (216)
T ss_dssp TTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEECT--TSC
T ss_pred hCCCCChhHHHHHHHHHHHHHHHcCCCccCEEEEc--CCe
Confidence 4433221111 122344678899999999998553 564
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-06 Score=82.42 Aligned_cols=169 Identities=12% Similarity=0.119 Sum_probs=106.3
Q ss_pred CcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccC
Q 008336 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (569)
Q Consensus 197 gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~ 276 (569)
.+.+++-|+.+| |....+.+.+++..+. . +.|.... ...+++.|+++
T Consensus 27 ~~v~vVgff~~~---~~~~~~~f~~~A~~l~-~-----~~F~~t~------------------------~~~v~~~~~v~ 73 (227)
T 4f9z_D 27 TEVAVIGFFQDL---EIPAVPILHSMVQKFP-G-----VSFGIST------------------------DSEVLTHYNIT 73 (227)
T ss_dssp SSEEEEEECSCS---CSTHHHHHHHHTTTCT-T-----SEEEEEC------------------------CHHHHHHTTCC
T ss_pred CCeEEEEEecCC---CchhHHHHHHHHHhCC-C-----ceEEEEC------------------------CHHHHHHcCCC
Confidence 356667777776 5678888888888773 2 3333321 23567889998
Q ss_pred CCceEEEECCCC-Cc-hhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCccceecCCCCce-ecc
Q 008336 277 TLPTLVIIGPDG-KT-LHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV-PVS 353 (569)
Q Consensus 277 ~~Ptlvi~~~~g-~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~~~g~~v-~l~ 353 (569)
+ |+++++.+.. +. .+..... | +++.+.+..++..... |-+. ..+.... .+-
T Consensus 74 ~-p~i~lfk~~~~~~~~~~~~~~-----g----~~~~~~l~~fi~~~~~---------------plv~-e~t~~n~~~~~ 127 (227)
T 4f9z_D 74 G-NTICLFRLVDNEQLNLEDEDI-----E----SIDATKLSRFIEINSL---------------HMVT-EYNPVTVIGLF 127 (227)
T ss_dssp S-SEEEEEETTTTEEEEECHHHH-----H----TCCHHHHHHHHHHHCC---------------CSEE-ECCHHHHHHHH
T ss_pred C-CeEEEEEecCccccccccccc-----C----CCCHHHHHHHHHHhCC---------------Ccee-ecCcccHHHHh
Confidence 8 9999998532 21 1111000 0 4577777777764321 1111 1111110 000
Q ss_pred cCCC-CEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 354 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 354 ~~~g-k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
+ .+ +.++|.|..+||+.|...++.+.+++++++++ +.++.++.+... ...+.+.
T Consensus 128 ~-~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~---i~F~~vd~~~~~---------------------~~~~l~~ 182 (227)
T 4f9z_D 128 N-SVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGK---ILFILVDSGMKE---------------------NGKVISF 182 (227)
T ss_dssp H-SSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTT---CEEEEEETTSGG---------------------GHHHHHH
T ss_pred c-cCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCC---EEEEEeCCccHh---------------------HHHHHHH
Confidence 1 13 45666777899999999999999999999875 888888776432 1246688
Q ss_pred cCCC--CccEEEEECCCCc
Q 008336 433 FKVS--GIPMLVAIGPSGR 449 (569)
Q Consensus 433 ~~v~--~~Pt~~lid~~G~ 449 (569)
||+. .+|++.+++..+.
T Consensus 183 fgl~~~~~P~~~i~~~~~~ 201 (227)
T 4f9z_D 183 FKLKESQLPALAIYQTLDD 201 (227)
T ss_dssp TTCCGGGCSEEEEEESSSC
T ss_pred cCCCcccCCEEEEEECCCC
Confidence 9998 8999999986554
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-07 Score=78.30 Aligned_cols=67 Identities=21% Similarity=0.472 Sum_probs=46.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ +++ ||++|||+|+.+.|.|.++.. .+.++.|+.+...... ...+.+.|++
T Consensus 18 ~~~~vv~-f~a~~C~~C~~~~~~l~~~~~------~~~~v~v~~~~~~~~~-------------------~~~l~~~~~v 71 (116)
T 2e7p_A 18 SSAPVVV-FSKTYCGYCNRVKQLLTQVGA------SYKVVELDELSDGSQL-------------------QSALAHWTGR 71 (116)
T ss_dssp TSSSEEE-EECTTCHHHHHHHHHHHHHTC------CCEEEEGGGSTTHHHH-------------------HHHHHHHHSC
T ss_pred cCCCEEE-EECCCChhHHHHHHHHHHcCC------CeEEEEccCCCChHHH-------------------HHHHHHHhCC
Confidence 345 666 999999999999999888742 2445555444332111 1358889999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|++ ++ +|+++.
T Consensus 72 ~~~Pt~-~~--~g~~v~ 85 (116)
T 2e7p_A 72 GTVPNV-FI--GGKQIG 85 (116)
T ss_dssp CSSCEE-EE--TTEEEE
T ss_pred CCcCEE-EE--CCEEEC
Confidence 999999 44 677764
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.45 E-value=9.6e-07 Score=81.11 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=37.0
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d 401 (569)
.++++|+.||++|||+|+.+.|.|.++.+++.++ +.+..+.+.
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~~ 66 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPAD---VHFVRLPAL 66 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEECC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCC---eEEEEEehh
Confidence 4899999999999999999999999988888654 777777664
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-06 Score=79.70 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=37.5
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d 80 (569)
.++ +|+.||++|||+|+++.|.+.++.+++.+ ++.++.+.++
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ--DVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECC
T ss_pred CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC--CeEEEEEecc
Confidence 578 99999999999999999999999998875 4888888876
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.43 E-value=9.3e-07 Score=81.37 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=37.0
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d 401 (569)
.++++|+.||.+|||+|..+.|.|.++.++++.+ +.+..+.+.
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~~ 63 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSD---AYLRTEHVV 63 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTT---EEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCc---eEEEEeccc
Confidence 4789999999999999999999999998888643 777777764
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=98.41 E-value=8e-07 Score=84.25 Aligned_cols=66 Identities=17% Similarity=0.251 Sum_probs=54.3
Q ss_pred CCEEEEEEec--CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC---ChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 357 GKTILLYFSA--HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 357 gk~vll~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~---~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
+++|||.||| |||+ +.|.|.++++.+++. .++.|+.|++|. +. ..++++
T Consensus 22 ~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~-~~v~~akVDvd~~g~~~---------------------~~~l~~ 75 (240)
T 2qc7_A 22 SKFVLVKFDTQYPYGE----KQDEFKRLAENSASS-DDLLVAEVGISDYGDKL---------------------NMELSE 75 (240)
T ss_dssp CSEEEEEECCSSCCSH----HHHHHHHHHHHHTTC-TTEEEEEECCCCSSSCC---------------------SHHHHH
T ss_pred CCCEEEEEeCCCCCCc----chHHHHHHHHHhcCC-CCeEEEEEeCCcccchh---------------------hHHHHH
Confidence 6899999999 9999 999999999999742 358888888663 11 236999
Q ss_pred hcCCC--CccEEEEECCCCc
Q 008336 432 KFKVS--GIPMLVAIGPSGR 449 (569)
Q Consensus 432 ~~~v~--~~Pt~~lid~~G~ 449 (569)
.|+|+ ++||++++ ++|+
T Consensus 76 ~~~V~~~~~PTl~~f-~~G~ 94 (240)
T 2qc7_A 76 KYKLDKESYPVFYLF-RDGD 94 (240)
T ss_dssp HTTCCGGGCSEEEEE-ETTC
T ss_pred HcCCCCCCCCEEEEE-eCCC
Confidence 99999 99999999 6676
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-07 Score=92.40 Aligned_cols=62 Identities=18% Similarity=0.420 Sum_probs=43.4
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcc
Q 008336 360 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP 439 (569)
Q Consensus 360 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P 439 (569)
.+++|||+|||||+++.|.++++++++ . .+.+|.... .+...+++++|+|+++|
T Consensus 200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l-------~--~Vd~d~~d~-----------------~~~~~~la~~~gI~~vP 253 (291)
T 3kp9_A 200 GGTMYGAYWCPHCQDQKELFGAAFDQV-------P--YVECSPNGP-----------------GTPQAQECTEAGITSYP 253 (291)
T ss_dssp TCEEEECTTCHHHHHHHHHHGGGGGGS-------C--EEESCSSCS-----------------SSCCCHHHHTTTCCSTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHc-------C--EEEEeecCc-----------------hhhHHHHHHHcCCcccC
Confidence 468999999999999999998876443 2 344442100 00124689999999999
Q ss_pred EEEEECCCCcE
Q 008336 440 MLVAIGPSGRT 450 (569)
Q Consensus 440 t~~lid~~G~i 450 (569)
|+++ +|+.
T Consensus 254 T~~i---~G~~ 261 (291)
T 3kp9_A 254 TWII---NGRT 261 (291)
T ss_dssp EEEE---TTEE
T ss_pred eEEE---CCEE
Confidence 9655 6764
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=98.38 E-value=6.6e-07 Score=70.10 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=49.6
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC--CCCc
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK--VSGI 438 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~--v~~~ 438 (569)
++.|+++|||+|++..+.|.++..+++ ++.+..++++.++. ...++.+.++ +.++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~vdi~~~~~-------------------~~~~l~~~~~~~~~~v 59 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERD----DFQYQYVDIRAEGI-------------------TKEDLQQKAGKPVETV 59 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS----SCEEEEECHHHHTC-------------------CSHHHHHHTCCCSCCS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCC----CceEEEEecccChH-------------------HHHHHHHHhCCCCcee
Confidence 677999999999999999999887753 47788777653321 0135788888 9999
Q ss_pred cEEEEECCCCcEEE
Q 008336 439 PMLVAIGPSGRTIT 452 (569)
Q Consensus 439 Pt~~lid~~G~i~~ 452 (569)
|+++ + +|+.+.
T Consensus 60 P~i~-~--~g~~i~ 70 (85)
T 1ego_A 60 PQIF-V--DQQHIG 70 (85)
T ss_dssp CEEE-E--TTEEEE
T ss_pred CeEE-E--CCEEEE
Confidence 9984 4 577765
|
| >2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-05 Score=75.98 Aligned_cols=206 Identities=10% Similarity=0.118 Sum_probs=119.1
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
++|-|+++|| ....+.+.++++.+++. +.+..+ .+ ..+++.|++.+ |
T Consensus 27 ~vvgff~~~~---~~~~~~f~~~A~~lr~~--~~F~~~-~~--------------------------~~v~~~~~~~~-p 73 (252)
T 2h8l_A 27 SIVGFFDDSF---SEAHSEFLKAASNLRDN--YRFAHT-NV--------------------------ESLVNEYDDNG-E 73 (252)
T ss_dssp EEEEEESCTT---SHHHHHHHHHHHHTTTT--SCEEEE-CC--------------------------HHHHHHHCSSS-E
T ss_pred EEEEEECCCC---ChHHHHHHHHHHhcccC--cEEEEE-Ch--------------------------HHHHHHhCCCC-C
Confidence 7888999985 45677899999998654 444433 22 24788899997 9
Q ss_pred EEEEECCCCcEEEc-CCcceeecc-cCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCceeeeccccC
Q 008336 120 HLVILDENGKVLSD-GGVEIIREY-GVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEG 197 (569)
Q Consensus 120 ~~~lid~~G~i~~~-~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~g 197 (569)
+++++.+ +++... +... ..| .. .++.+.|..++.. +..+.+...+.++.... ..+
T Consensus 74 ~i~~fk~-~~~~~kf~e~~--~~y~~g---~~~~~~l~~fi~~----------------~~~Plv~e~t~~n~~~~-~~~ 130 (252)
T 2h8l_A 74 GIILFRP-SHLTNKFEDKT--VAYTEQ---KMTSGKIKKFIQE----------------NIFGICPHMTEDNKDLI-QGK 130 (252)
T ss_dssp EEEEECC-GGGCCTTSCSE--EECCCS---SCCHHHHHHHHHH----------------HSSCSSCEECTTTHHHH-SSS
T ss_pred cEEEEcc-hhhcccccccc--cccCCC---CcCHHHHHHHHHh----------------cccCCeeecccccHhhh-cCC
Confidence 9998853 221111 0000 112 11 2455666655533 23344544444443332 233
Q ss_pred cEEEEEEecCCcccc----hhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhc
Q 008336 198 KTIGLYFSMSSYKAS----AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (569)
Q Consensus 198 k~v~l~f~~~~~~~c----~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f 273 (569)
. +++.|+...+... ..+...+.++++++++++..+ .|+.+|.+. ..+++++|
T Consensus 131 ~-~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~--~F~~~d~~~---------------------~~~~~~~f 186 (252)
T 2h8l_A 131 D-LLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKL--NFAVASRKT---------------------FSHELSDF 186 (252)
T ss_dssp S-EEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCC--EEEEEETTT---------------------THHHHGGG
T ss_pred C-eEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceE--EEEEEchHH---------------------HHHHHHHc
Confidence 3 3444443322211 246777888999998765444 455555443 45678999
Q ss_pred cc--C--CCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHH--HHHHHHHHHHHHhhhhhhhhhccC
Q 008336 274 EL--S--TLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEK--FAELAEIQRAKEESQTLESVLVSG 337 (569)
Q Consensus 274 ~v--~--~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ 337 (569)
|+ . .+|.+++++.+++.... . -.++.+. +.+|......+...+.++|+.++.
T Consensus 187 gl~~~~~~~P~v~i~~~~~~ky~~-----------~-~~~t~~~~~i~~F~~~~~~Gkl~~~~kSe~iPe 244 (252)
T 2h8l_A 187 GLESTAGEIPVVAIRTAKGEKFVM-----------Q-EEFSRDGKALERFLQDYFDGNLKRYLKSEPIPE 244 (252)
T ss_dssp TCCCCSCSSCEEEEECTTSCEEEC-----------C-SCCCTTSHHHHHHHHHHHHTCSCCCC-------
T ss_pred CCCCccCCCCEEEEEeCcCcEecC-----------C-cccCcchHHHHHHHHHHHCCCccccccCCCCCC
Confidence 99 3 69999999765432110 0 1467777 999999999999988888877655
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-06 Score=83.16 Aligned_cols=93 Identities=10% Similarity=0.153 Sum_probs=59.2
Q ss_pred ccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC---C-------------hhH-HHHHHhcCC
Q 008336 353 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---D-------------QTS-FDEFFKGMP 415 (569)
Q Consensus 353 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~---~-------------~~~-~~~~~~~~~ 415 (569)
..-.++++|+.|+.+|||+|+++.+.+.++.+. + ++.|+.+.+.. . +.. |..+...+.
T Consensus 93 G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g---~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~ 167 (241)
T 1v58_A 93 GKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS--G---KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGG 167 (241)
T ss_dssp SCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT--T---SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC--C---cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhc
Confidence 333478999999999999999999998876553 2 47777766521 1 111 111111110
Q ss_pred --Ccc--------cccCchhhHHHHHhcCCCCccEEEEECCCCcE
Q 008336 416 --WLA--------LPFGDARKASLSRKFKVSGIPMLVAIGPSGRT 450 (569)
Q Consensus 416 --~~~--------~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i 450 (569)
.+. .....+....+++.++|+++||+++.+.+|++
T Consensus 168 ~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~ 212 (241)
T 1v58_A 168 KLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL 212 (241)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred cCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 000 00012344567889999999999999888975
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-06 Score=71.53 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=46.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
.+++++.|+++||++|+...+.|.++. . ++.+..|++|... ..++++.|+ .
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~----~---~i~~~~vdi~~~~---------------------~~el~~~~g-~ 65 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYK----D---RFILQEVDITLPE---------------------NSTWYERYK-F 65 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTS----S---SSEEEEEETTSST---------------------THHHHHHSS-S
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhh----h---CCeEEEEECCCcc---------------------hHHHHHHHC-C
Confidence 457888999999999999999886543 2 2678888887211 135888999 9
Q ss_pred CccEEEEECCCCcEE
Q 008336 437 GIPMLVAIGPSGRTI 451 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~ 451 (569)
++|+++ + +|+.+
T Consensus 66 ~vP~l~-~--~g~~~ 77 (100)
T 1wjk_A 66 DIPVFH-L--NGQFL 77 (100)
T ss_dssp SCSEEE-E--SSSEE
T ss_pred CCCEEE-E--CCEEE
Confidence 999864 4 57664
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=98.33 E-value=6e-07 Score=70.34 Aligned_cols=66 Identities=21% Similarity=0.390 Sum_probs=49.3
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC--CCCc
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK--VMGI 118 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~~ 118 (569)
++.||++|||+|++..+.|.++..++. ++.+..++++.+.. ....+.+.++ +.++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~vdi~~~~~--------------------~~~~l~~~~~~~~~~v 59 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQYVDIRAEGI--------------------TKEDLQQKAGKPVETV 59 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEEECHHHHTC--------------------CSHHHHHHTCCCSCCS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCC---CceEEEEecccChH--------------------HHHHHHHHhCCCCcee
Confidence 678999999999999999999988764 37788887653210 0125778888 9999
Q ss_pred cEEEEECCCCcEEE
Q 008336 119 PHLVILDENGKVLS 132 (569)
Q Consensus 119 P~~~lid~~G~i~~ 132 (569)
|+++ + +|+.+.
T Consensus 60 P~i~-~--~g~~i~ 70 (85)
T 1ego_A 60 PQIF-V--DQQHIG 70 (85)
T ss_dssp CEEE-E--TTEEEE
T ss_pred CeEE-E--CCEEEE
Confidence 9984 4 576653
|
| >3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-05 Score=76.74 Aligned_cols=208 Identities=13% Similarity=0.102 Sum_probs=120.4
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
.+ ++|-|++++|. ...+.+.++++.+++. +.+... .+ ..+++.|++.
T Consensus 25 ~~v~vVgff~~~~~---~~~~~F~~~A~~lr~~--~~F~~t-~~--------------------------~~v~~~~~v~ 72 (250)
T 3ec3_A 25 DDVVILGVFQGVGD---PGYLQYQDAANTLRED--YKFHHT-FS--------------------------TEIAKFLKVS 72 (250)
T ss_dssp SSCEEEEECSCTTC---HHHHHHHHHHHHHTTT--CCEEEE-CC--------------------------HHHHHHHTCC
T ss_pred CCeEEEEEEcCCCc---hHHHHHHHHHHhhhcC--cEEEEE-Cc--------------------------HHHHHHcCCC
Confidence 45 88889998854 6778899999998754 444332 22 2477789998
Q ss_pred CccEEEEECCCCcEEEc-CCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCceeeeccc
Q 008336 117 GIPHLVILDENGKVLSD-GGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDL 195 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~ 195 (569)
+ |+++++.++ ....+ +.... .|... .+++.+.|..++ ..+..+++...+.++.....
T Consensus 73 ~-p~ivlfk~~-~~~~kfde~~~--~y~g~-~~~~~~~l~~fi----------------~~~~~Plv~e~t~~n~~~~~- 130 (250)
T 3ec3_A 73 L-GKLVLMQPE-KFQSKYEPRMH--VMDVQ-GSTEASAIKDYV----------------VKHALPLVGHRKTSNDAKRY- 130 (250)
T ss_dssp S-SEEEEECCG-GGCCTTSCSCE--EEECC-TTSCHHHHHHHH----------------HHHSSCTEEEECTTTHHHHS-
T ss_pred C-CeEEEEecc-hhhccccccce--eccCC-CCCCHHHHHHHH----------------HHcCCCceeecCccchhhhh-
Confidence 7 999999542 11100 00000 11100 134555555544 33445666555555443222
Q ss_pred cCcEEEEEEecCC-c----ccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHH
Q 008336 196 EGKTIGLYFSMSS-Y----KASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 270 (569)
Q Consensus 196 ~gk~v~l~f~~~~-~----~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~ 270 (569)
.++.+.+.|+... . .....+...+.+++++++ + +.|+.+|.+. ..+.+
T Consensus 131 ~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k-k-----i~F~~~d~~~---------------------~~~~l 183 (250)
T 3ec3_A 131 SKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFP-E-----YTFAIADEED---------------------YATEV 183 (250)
T ss_dssp CSSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCT-T-----SEEEEEETTT---------------------THHHH
T ss_pred ccCccEEEEEecccccccchhHHHHHHHHHHHHHhhc-c-----eeEEEEcHHH---------------------HHHHH
Confidence 3555556555432 2 223446677777777776 4 6666666543 44567
Q ss_pred hhcccCC--C-ceEEEECCCCC-chhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 008336 271 RYFELST--L-PTLVIIGPDGK-TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGD 338 (569)
Q Consensus 271 ~~f~v~~--~-Ptlvi~~~~g~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 338 (569)
++||+.. . |.+++++.++. +... .-.++.+.+.+|.....+++..+.++|+.++..
T Consensus 184 ~~fgl~~~~~~p~~~~~~~~~~ky~~~------------~~~~t~~~i~~Fv~~~~~Gkl~p~~kSepiPe~ 243 (250)
T 3ec3_A 184 KDLGLSESGGDVNAAILDESGKKFAME------------PEEFDSDALREFVMAFKKGKLKPVIKSQPVPKN 243 (250)
T ss_dssp HHTTCSSCSCSCEEEEECTTSCEEECC------------CCSCCHHHHHHHHHHHHTTCCCCCC--------
T ss_pred HHcCCCccCCCcEEEEEcCCCceecCC------------cccCCHHHHHHHHHHHHCCCccceeecCCCCCC
Confidence 8999973 4 57888875543 2221 114799999999999999999999999877653
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=98.23 E-value=7.8e-06 Score=74.93 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=36.0
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 400 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~ 400 (569)
.++++|+.||.+|||+|..+.+.+.++.+++.. ++.+..+.+
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK---DVRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT---TEEEEEEEC
T ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC---ceEEEEeCc
Confidence 478899999999999999999999988888754 377777776
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-06 Score=70.18 Aligned_cols=60 Identities=23% Similarity=0.347 Sum_probs=45.0
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
+++.||++|||+|+...|.|.++.+ ++.+..|+++.... .++.+.|+ .++|
T Consensus 18 ~v~~f~~~~C~~C~~~~~~L~~l~~------~i~~~~vdi~~~~~----------------------~el~~~~g-~~vP 68 (100)
T 1wjk_A 18 VLTLFTKAPCPLCDEAKEVLQPYKD------RFILQEVDITLPEN----------------------STWYERYK-FDIP 68 (100)
T ss_dssp EEEEEECSSCHHHHHHHHHTSTTSS------SSEEEEEETTSSTT----------------------HHHHHHSS-SSCS
T ss_pred EEEEEeCCCCcchHHHHHHHHHhhh------CCeEEEEECCCcch----------------------HHHHHHHC-CCCC
Confidence 8888999999999999998876532 27788888882111 25788999 9999
Q ss_pred EEEEECCCCcEE
Q 008336 120 HLVILDENGKVL 131 (569)
Q Consensus 120 ~~~lid~~G~i~ 131 (569)
+++ + +|+.+
T Consensus 69 ~l~-~--~g~~~ 77 (100)
T 1wjk_A 69 VFH-L--NGQFL 77 (100)
T ss_dssp EEE-E--SSSEE
T ss_pred EEE-E--CCEEE
Confidence 764 4 56653
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=4.3e-06 Score=77.95 Aligned_cols=86 Identities=21% Similarity=0.304 Sum_probs=54.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC---Chh----------------HHHHHHhcCCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQT----------------SFDEFFKGMPW 416 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~---~~~----------------~~~~~~~~~~~ 416 (569)
.++++|+.||++|||+|+++.|.|.++.+ . ++.|..+.... .+. .+..++.....
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~ 158 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----L--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP 158 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHH----T--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHh----C--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCC
Confidence 37899999999999999999999887543 1 36776654431 111 12222221110
Q ss_pred c--ccccCchhhHHHHHhcCCCCccEEEEECCCCc
Q 008336 417 L--ALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 449 (569)
Q Consensus 417 ~--~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~ 449 (569)
. ......+....+++.++|+++||+++ .+|+
T Consensus 159 ~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~ 191 (211)
T 1t3b_A 159 KEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGE 191 (211)
T ss_dssp SSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSC
T ss_pred ChHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCE
Confidence 0 01112245567889999999999988 4676
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1e-05 Score=77.15 Aligned_cols=97 Identities=10% Similarity=0.117 Sum_probs=60.7
Q ss_pred eeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC---CCH-------------HH-HHHHHH
Q 008336 30 QVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD---EDD-------------EA-FKGYFS 91 (569)
Q Consensus 30 ~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d---~~~-------------~~-~~~~~~ 91 (569)
.+.+..-.++ +|+.|+.+|||+|+++.+.+.++.+. +++.|+.+.+. ... .. |..+..
T Consensus 89 ~i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~----g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~ 164 (241)
T 1v58_A 89 WLLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS----GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA 164 (241)
T ss_dssp CEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT----TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred CceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC----CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHH
Confidence 3455555678 99999999999999999999887664 35777777653 111 11 111111
Q ss_pred hCC---CcccccC------CchhHHHHHHhcCCCCccEEEEECCCCcE
Q 008336 92 KMP---WLAVPFS------DSETRDKLDELFKVMGIPHLVILDENGKV 130 (569)
Q Consensus 92 ~~~---~~~~~~~------~~~~~~~l~~~~~v~~~P~~~lid~~G~i 130 (569)
.+. +...... .-+....+.+.+||+++|++++.+.+|++
T Consensus 165 ~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~ 212 (241)
T 1v58_A 165 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL 212 (241)
T ss_dssp TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred HhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 111 0000000 11123467789999999999999878864
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.20 E-value=7.8e-06 Score=74.93 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=36.2
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d 80 (569)
.++ +|+.||.+|||+|+.+.|.+.++.+++.+ ++.+..+.+.
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~ 66 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA--DVHFVRLPAL 66 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC--CeEEEEEehh
Confidence 578 99999999999999999999999998875 4777767663
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.17 E-value=4e-07 Score=88.40 Aligned_cols=72 Identities=18% Similarity=0.412 Sum_probs=49.5
Q ss_pred eeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHH
Q 008336 30 QVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (569)
Q Consensus 30 ~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (569)
.+.+++.-++ .+++|||+|||||+++.|.+.+++++++ .|++|.... .+...+
T Consensus 189 ~~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l~--------~Vd~d~~d~------------------~~~~~~ 242 (291)
T 3kp9_A 189 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP--------YVECSPNGP------------------GTPQAQ 242 (291)
T ss_dssp HHHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGSC--------EEESCSSCS------------------SSCCCH
T ss_pred HHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHcC--------EEEEeecCc------------------hhhHHH
Confidence 4455554555 7899999999999999999999876542 344441100 001136
Q ss_pred HHHhcCCCCccEEEEECCCCcE
Q 008336 109 LDELFKVMGIPHLVILDENGKV 130 (569)
Q Consensus 109 l~~~~~v~~~P~~~lid~~G~i 130 (569)
++++|+|+++||+++ +|+.
T Consensus 243 la~~~gI~~vPT~~i---~G~~ 261 (291)
T 3kp9_A 243 ECTEAGITSYPTWII---NGRT 261 (291)
T ss_dssp HHHTTTCCSTTEEEE---TTEE
T ss_pred HHHHcCCcccCeEEE---CCEE
Confidence 899999999999655 6753
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.16 E-value=4.5e-06 Score=89.13 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=56.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ .++.||++|||+|+.+.|.+.+++..+. ++.+..|+++..+ +++..|+|
T Consensus 116 ~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~---~v~~~~vd~~~~~------------------------~~~~~~~i 168 (521)
T 1hyu_A 116 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP---RIKHTAIDGGTFQ------------------------NEITERNV 168 (521)
T ss_dssp CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT---TEEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCcceEEEECCCCcCcHHHHHHHHHHHhHcC---ceEEEEEechhhH------------------------HHHHHhCC
Confidence 466 8999999999999999999999988764 4889999988764 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
+++|++++ +|+.+.
T Consensus 169 ~svPt~~i---~g~~~~ 182 (521)
T 1hyu_A 169 MGVPAVFV---NGKEFG 182 (521)
T ss_dssp CSSSEEEE---TTEEEE
T ss_pred CccCEEEE---CCEEEe
Confidence 99999977 787764
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-05 Score=73.56 Aligned_cols=44 Identities=27% Similarity=0.386 Sum_probs=37.6
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR 402 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~ 402 (569)
.++++|+.||+.|||+|+++.|.+.++.+++.++ +.+..+.++.
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~---v~~~~~p~~~ 66 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDD---MYLRTEHVVW 66 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTT---EEEEEEECCC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCC---eEEEEecCCC
Confidence 3799999999999999999999999988887654 7777777753
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-05 Score=75.28 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=53.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC---CH----------------HHHHHHHHhCCCc
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE---DD----------------EAFKGYFSKMPWL 96 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~---~~----------------~~~~~~~~~~~~~ 96 (569)
.++ +++.||++|||+|+++.|.+.++.+ .+ +.+..+...- .. ..+.+++......
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~~-v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~ 159 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----LG-ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPK 159 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHH----TT-EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCS
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHh----CC-cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCC
Confidence 567 9999999999999999999998654 23 6776654431 11 1122222222111
Q ss_pred ccc-cCCchhHHHHHHhcCCCCccEEEEECCCCc
Q 008336 97 AVP-FSDSETRDKLDELFKVMGIPHLVILDENGK 129 (569)
Q Consensus 97 ~~~-~~~~~~~~~l~~~~~v~~~P~~~lid~~G~ 129 (569)
... -..-+....+++.+||+++|++++ .+|+
T Consensus 160 ~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~ 191 (211)
T 1t3b_A 160 EVKTPNIVKKHYELGIQFGVRGTPSIVT--STGE 191 (211)
T ss_dssp SCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSC
T ss_pred hHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCE
Confidence 000 011123457889999999999887 4675
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.1e-05 Score=69.63 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=40.6
Q ss_pred eecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC
Q 008336 350 VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401 (569)
Q Consensus 350 v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d 401 (569)
+.+....++++|+.|+..+||+|..+.+.+.++.+++.+. .++.+++....
T Consensus 20 ~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~-~~v~~~~~~~~ 70 (175)
T 1z6m_A 20 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKS-GKVERIIKLFD 70 (175)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHT-TSEEEEEEECC
T ss_pred cccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhC-CcEEEEEEeCC
Confidence 4455556899999999999999999999999988888322 24888887764
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-05 Score=73.55 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=36.1
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d 80 (569)
.++ +|+.||.+|||+|..+.|.+.++.++++. ++.+..+.+.
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~ 63 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS--DAYLRTEHVV 63 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT--TEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC--ceEEEEeccc
Confidence 578 99999999999999999999999998864 4778777763
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.01 E-value=5.6e-05 Score=67.98 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=42.9
Q ss_pred ceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 008336 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (569)
Q Consensus 29 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d 80 (569)
..+.+.+..++ +|+.|+..|||+|+.+.|.+.++.++|.+.+++.++...+.
T Consensus 18 ~~~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 70 (175)
T 1z6m_A 18 TGLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD 70 (175)
T ss_dssp SSEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred CCcccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCC
Confidence 34566777889 99999999999999999999999998854456888887764
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.1e-05 Score=62.44 Aligned_cols=59 Identities=15% Similarity=0.295 Sum_probs=41.3
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|+++|||+|++..+.|.++ ++.+..++++.+++. .+..+.+++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~~~--------------------~~~~~~~g~~~vP~ 53 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENR---------GFDFEMINVDRVPEA--------------------AEALRAQGFRQLPV 53 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT---------TCCCEEEETTTCHHH--------------------HHHHHHTTCCSSCE
T ss_pred EEEEcCCCChhHHHHHHHHHHC---------CCCeEEEECCCCHHH--------------------HHHHHHhCCCccCE
Confidence 5679999999999999887642 256677888866431 11223589999999
Q ss_pred EEEECCCCcEE
Q 008336 441 LVAIGPSGRTI 451 (569)
Q Consensus 441 ~~lid~~G~i~ 451 (569)
++ + +|+.+
T Consensus 54 ~~-~--~g~~~ 61 (81)
T 1h75_A 54 VI-A--GDLSW 61 (81)
T ss_dssp EE-E--TTEEE
T ss_pred EE-E--CCEEE
Confidence 84 4 46543
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=3.7e-05 Score=58.18 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=41.3
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|+++||++|++..+.|+++ ++.+..++++.+++. ...+ +.+++.++|+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~---------~i~~~~~di~~~~~~-------------------~~~~-~~~~~~~vP~ 53 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA---------GLAYNTVDISLDDEA-------------------RDYV-MALGYVQAPV 53 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT---------TCCCEEEETTTCHHH-------------------HHHH-HHTTCBCCCE
T ss_pred EEEEeCCCChHHHHHHHHHHHc---------CCCcEEEECCCCHHH-------------------HHHH-HHcCCCccCE
Confidence 5679999999999999987653 255666777765421 1122 4689999999
Q ss_pred EEEECCCCcEE
Q 008336 441 LVAIGPSGRTI 451 (569)
Q Consensus 441 ~~lid~~G~i~ 451 (569)
+++ +|+.+
T Consensus 54 l~~---~g~~~ 61 (75)
T 1r7h_A 54 VEV---DGEHW 61 (75)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCeEE
Confidence 873 56653
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.3e-05 Score=60.47 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=41.3
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.||++|||+|++..+.|.+. + +.+..++++.+++. ....+.+++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~-------~-i~~~~vdi~~~~~~---------------------~~~~~~~g~~~vP~ 53 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENR-------G-FDFEMINVDRVPEA---------------------AEALRAQGFRQLPV 53 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-------T-CCCEEEETTTCHHH---------------------HHHHHHTTCCSSCE
T ss_pred EEEEcCCCChhHHHHHHHHHHC-------C-CCeEEEECCCCHHH---------------------HHHHHHhCCCccCE
Confidence 5779999999999998888752 2 66777888876541 11223589999999
Q ss_pred EEEECCCCcE
Q 008336 121 LVILDENGKV 130 (569)
Q Consensus 121 ~~lid~~G~i 130 (569)
++ + +|+.
T Consensus 54 ~~-~--~g~~ 60 (81)
T 1h75_A 54 VI-A--GDLS 60 (81)
T ss_dssp EE-E--TTEE
T ss_pred EE-E--CCEE
Confidence 84 4 4654
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=6e-05 Score=57.01 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=41.3
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|+++||++|++..+.|.++ + +.+..++++.+++. ...+ +.+++.++|+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-------~-i~~~~~di~~~~~~--------------------~~~~-~~~~~~~vP~ 53 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA-------G-LAYNTVDISLDDEA--------------------RDYV-MALGYVQAPV 53 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-------T-CCCEEEETTTCHHH--------------------HHHH-HHTTCBCCCE
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------C-CCcEEEECCCCHHH--------------------HHHH-HHcCCCccCE
Confidence 5679999999999998888754 2 56677788765431 0122 4689999999
Q ss_pred EEEECCCCcE
Q 008336 121 LVILDENGKV 130 (569)
Q Consensus 121 ~~lid~~G~i 130 (569)
+++ +|+.
T Consensus 54 l~~---~g~~ 60 (75)
T 1r7h_A 54 VEV---DGEH 60 (75)
T ss_dssp EEE---TTEE
T ss_pred EEE---CCeE
Confidence 873 5654
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.3e-05 Score=68.31 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=35.4
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~ 79 (569)
.++ +|+.||.+|||+|..+.|.+.++.+++.. ++.+..+.+
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK--DVRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TEEEEEEEC
T ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC--ceEEEEeCc
Confidence 578 89999999999999999999999988753 477777765
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=97.83 E-value=6.4e-05 Score=68.87 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=36.7
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d 80 (569)
.++ +|+.||+.|||+|+++.|.+.++.+++.+ ++.+..+.++
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~--~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD--DMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT--TEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC--CeEEEEecCC
Confidence 478 99999999999999999999999988875 4778777775
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=5.3e-05 Score=61.74 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=43.6
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCH--HHHHHHHHhCCCcccccCCchhHHHHHHhcCCCC
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD--EAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 117 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 117 (569)
.++.|+++|||+|++..+.|.++...+. + +..++++.+. ... ...+.+.+++.+
T Consensus 13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~---~--~~~vdi~~~~~~~~~-------------------~~~l~~~~g~~~ 68 (105)
T 1kte_A 13 KVVVFIKPTCPFCRKTQELLSQLPFKEG---L--LEFVDITATSDTNEI-------------------QDYLQQLTGART 68 (105)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHSCBCTT---S--EEEEEGGGSTTHHHH-------------------HHHHHHHHSCCC
T ss_pred CEEEEEcCCCHhHHHHHHHHHHcCCCCC---c--cEEEEccCCCCHHHH-------------------HHHHHHHhCCCC
Confidence 5677999999999999998886533321 2 4445655431 111 124777899999
Q ss_pred ccEEEEECCCCcEEE
Q 008336 118 IPHLVILDENGKVLS 132 (569)
Q Consensus 118 ~P~~~lid~~G~i~~ 132 (569)
+|+++ + +|+.+.
T Consensus 69 vP~i~-~--~g~~i~ 80 (105)
T 1kte_A 69 VPRVF-I--GKECIG 80 (105)
T ss_dssp SCEEE-E--TTEEEE
T ss_pred cCeEE-E--CCEEEe
Confidence 99974 4 576653
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=97.76 E-value=2.3e-05 Score=65.19 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=44.9
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEE---EEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFE---VIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~---vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
..+ .++.|+++|||+|++..+.|.++. +. +..++++.+++. ......+.+.
T Consensus 16 i~~~~vv~f~~~~Cp~C~~~~~~L~~~~--------~~~~~~~~vdi~~~~~~-----------------~~~~~~l~~~ 70 (114)
T 2hze_A 16 LANNKVTIFVKYTCPFCRNALDILNKFS--------FKRGAYEIVDIKEFKPE-----------------NELRDYFEQI 70 (114)
T ss_dssp CCTTCEEEEECTTCHHHHHHHHHHTTSC--------BCTTSEEEEEGGGSSSH-----------------HHHHHHHHHH
T ss_pred hccCCEEEEEeCCChhHHHHHHHHHHcC--------CCcCceEEEEccCCCCh-----------------HHHHHHHHHH
Confidence 344 677799999999999888776532 33 566666644200 0111357788
Q ss_pred cCCCCccEEEEECCCCcEEE
Q 008336 113 FKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i~~ 132 (569)
+++.++|++++ +|+.+.
T Consensus 71 ~g~~~vP~v~i---~g~~ig 87 (114)
T 2hze_A 71 TGGKTVPRIFF---GKTSIG 87 (114)
T ss_dssp HSCCSSCEEEE---TTEEEE
T ss_pred hCCCCcCEEEE---CCEEEe
Confidence 99999998754 576653
|
| >3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.69 E-value=3.9e-05 Score=66.88 Aligned_cols=124 Identities=17% Similarity=0.142 Sum_probs=82.0
Q ss_pred CCceeecCCCceeeeccccCcEE-EEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCc
Q 008336 178 SRDFVISSDGRKISVSDLEGKTI-GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPW 256 (569)
Q Consensus 178 ~~d~~~~~~~~~~~~~~~~gk~v-~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~ 256 (569)
..+++...+.++...+...+..+ .++|....-+....+.+.+.+++++++++ ++|+.+|.+.+.
T Consensus 12 ~~PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgk-----i~Fv~vd~~~~~---------- 76 (147)
T 3bj5_A 12 QLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK-----ILFAFIDSDHTD---------- 76 (147)
T ss_dssp ---CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTT-----CEEEEECTTCGG----------
T ss_pred cCCeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCc-----eEEEEEecchHh----------
Confidence 44556555555544332233333 34455444444667888999999999876 677777763211
Q ss_pred ccccCCchhHHHHHhhcccCC--CceEEEECC--CC-CchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 008336 257 LALPFKDKSREKLARYFELST--LPTLVIIGP--DG-KTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLE 331 (569)
Q Consensus 257 ~~~~~~d~~~~~l~~~f~v~~--~Ptlvi~~~--~g-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 331 (569)
..+++++||++. +|+++|++. ++ ++.. ..-.++.+.+.+|.....++...+.++
T Consensus 77 ---------~~~~l~~fGl~~~~~P~v~i~~~~~~~~Ky~~------------~~~~~t~~~i~~Fv~d~l~GkL~p~~K 135 (147)
T 3bj5_A 77 ---------NQRILEFFGLKKEECPAVRLITLEEEMTKYKP------------ESEELTAERITEFCHRFLEGKIKPHLM 135 (147)
T ss_dssp ---------GHHHHHHTTCCGGGCSEEEEEECSSSCEEECC------------SCCCCCHHHHHHHHHHHHTTCSCEEEC
T ss_pred ---------HHHHHHHcCCCcccCCEEEEEecccccccCCC------------CcccCCHHHHHHHHHHHHcCCcccccc
Confidence 456789999984 999999975 23 2221 112578999999999999999999999
Q ss_pred hhhccC
Q 008336 332 SVLVSG 337 (569)
Q Consensus 332 ~~~~~~ 337 (569)
|+.++.
T Consensus 136 SEpiPe 141 (147)
T 3bj5_A 136 SQELPE 141 (147)
T ss_dssp CSCCCG
T ss_pred CCCCCC
Confidence 987765
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00011 Score=62.43 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=42.3
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC--HHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCc
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (569)
++.|+++|||+|++..+.|.++. +.+..+++|.+ ... ....+.+.+++.++
T Consensus 29 vvvf~~~~Cp~C~~~~~~L~~~~--------i~~~~vdid~~~~~~~-------------------~~~~l~~~~g~~~v 81 (130)
T 2cq9_A 29 VVIFSKTSCSYCTMAKKLFHDMN--------VNYKVVELDLLEYGNQ-------------------FQDALYKMTGERTV 81 (130)
T ss_dssp EEEEECSSCSHHHHHHHHHHHHT--------CCCEEEETTTSTTHHH-------------------HHHHHHHHHSSCCS
T ss_pred EEEEEcCCChHHHHHHHHHHHcC--------CCcEEEECcCCcCcHH-------------------HHHHHHHHhCCCCc
Confidence 34499999999999999888752 33455666644 111 11247788999999
Q ss_pred cEEEEECCCCcEEE
Q 008336 119 PHLVILDENGKVLS 132 (569)
Q Consensus 119 P~~~lid~~G~i~~ 132 (569)
|+++ + +|+.+.
T Consensus 82 P~l~-i--~G~~ig 92 (130)
T 2cq9_A 82 PRIF-V--NGTFIG 92 (130)
T ss_dssp SEEE-E--TTEEEE
T ss_pred CEEE-E--CCEEEc
Confidence 9985 4 576653
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=2.3e-05 Score=63.92 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=43.5
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|+++|||+|++..+.|.++...+ .+ +..+++|.+.+. ......+.+.+++.++|+
T Consensus 14 v~~f~~~~C~~C~~~~~~L~~~~~~~----~~--~~~vdi~~~~~~----------------~~~~~~l~~~~g~~~vP~ 71 (105)
T 1kte_A 14 VVVFIKPTCPFCRKTQELLSQLPFKE----GL--LEFVDITATSDT----------------NEIQDYLQQLTGARTVPR 71 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCT----TS--EEEEEGGGSTTH----------------HHHHHHHHHHHSCCCSCE
T ss_pred EEEEEcCCCHhHHHHHHHHHHcCCCC----Cc--cEEEEccCCCCH----------------HHHHHHHHHHhCCCCcCe
Confidence 56699999999999999886543222 12 445566544200 001135777899999999
Q ss_pred EEEECCCCcEEEc
Q 008336 441 LVAIGPSGRTITK 453 (569)
Q Consensus 441 ~~lid~~G~i~~~ 453 (569)
++ + +|+.+..
T Consensus 72 i~-~--~g~~i~g 81 (105)
T 1kte_A 72 VF-I--GKECIGG 81 (105)
T ss_dssp EE-E--TTEEEES
T ss_pred EE-E--CCEEEec
Confidence 74 4 5777653
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0003 Score=61.14 Aligned_cols=86 Identities=23% Similarity=0.353 Sum_probs=54.7
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC---Chh----------------HHHHHHhcCCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQT----------------SFDEFFKGMPW 416 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~---~~~----------------~~~~~~~~~~~ 416 (569)
.++.+|+.|+.++||+|+++.+.|.++ .++.|+++..-. .+. .|..++..-..
T Consensus 13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l--------~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~ 84 (147)
T 3gv1_A 13 NGKLKVAVFSDPDCPFCKRLEHEFEKM--------TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKF 84 (147)
T ss_dssp TCCEEEEEEECTTCHHHHHHHHHHTTC--------CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHhhc--------CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 478999999999999999999987643 247777664321 111 12222221110
Q ss_pred c----ccccCchhhHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 417 L----ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 417 ~----~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~ 451 (569)
. ......+.+..+++.+||+++||+++ .+|+++
T Consensus 85 ~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi--~nG~~i 121 (147)
T 3gv1_A 85 PVGGSICDNPVAETTSLGEQFGFNGTPTLVF--PNGRTQ 121 (147)
T ss_dssp CTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC--TTSCEE
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCccCEEEE--ECCEEe
Confidence 0 01112245678899999999999998 477753
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=97.60 E-value=5.9e-05 Score=62.63 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=44.8
Q ss_pred EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeE---EEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 359 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLE---VVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 359 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~---vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
..++.|+++|||+|++..+.|.++. +. +..+++|.+++. ......+.+.+++
T Consensus 19 ~~vv~f~~~~Cp~C~~~~~~L~~~~---------~~~~~~~~vdi~~~~~~----------------~~~~~~l~~~~g~ 73 (114)
T 2hze_A 19 NKVTIFVKYTCPFCRNALDILNKFS---------FKRGAYEIVDIKEFKPE----------------NELRDYFEQITGG 73 (114)
T ss_dssp TCEEEEECTTCHHHHHHHHHHTTSC---------BCTTSEEEEEGGGSSSH----------------HHHHHHHHHHHSC
T ss_pred CCEEEEEeCCChhHHHHHHHHHHcC---------CCcCceEEEEccCCCCh----------------HHHHHHHHHHhCC
Confidence 3567799999999999998875421 33 556666654210 0112357788999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 436 SGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~ 453 (569)
.++|++++ +|+.+..
T Consensus 74 ~~vP~v~i---~g~~igg 88 (114)
T 2hze_A 74 KTVPRIFF---GKTSIGG 88 (114)
T ss_dssp CSSCEEEE---TTEEEES
T ss_pred CCcCEEEE---CCEEEeC
Confidence 99998754 5877653
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00025 Score=61.60 Aligned_cols=91 Identities=24% Similarity=0.298 Sum_probs=56.3
Q ss_pred eecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-----CCH--------------HHHHHHH
Q 008336 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-----EDD--------------EAFKGYF 90 (569)
Q Consensus 31 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-----~~~--------------~~~~~~~ 90 (569)
+.+..-.++ +|+.|+.++||+|+++.+.+.++ +++.|+.+..- .+. ..|.+++
T Consensus 7 i~~~~~~a~~~vv~f~D~~Cp~C~~~~~~l~~l-------~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~ 79 (147)
T 3gv1_A 7 IKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKM-------TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWM 79 (147)
T ss_dssp EEEEETTCCEEEEEEECTTCHHHHHHHHHHTTC-------CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHH
T ss_pred eeeecCCCCEEEEEEECCCChhHHHHHHHHhhc-------CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHH
Confidence 444444678 99999999999999999987653 34777766432 111 1233333
Q ss_pred HhCCCcc-cc--cCCchhHHHHHHhcCCCCccEEEEECCCCcE
Q 008336 91 SKMPWLA-VP--FSDSETRDKLDELFKVMGIPHLVILDENGKV 130 (569)
Q Consensus 91 ~~~~~~~-~~--~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i 130 (569)
....... .. -..-+....+++.+||+++|++++ .+|++
T Consensus 80 ~~g~~~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi--~nG~~ 120 (147)
T 3gv1_A 80 RKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTLVF--PNGRT 120 (147)
T ss_dssp HHCCCCTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC--TTSCE
T ss_pred hCCCCCCccHHHHHHHHHHHHHHHHhCCCccCEEEE--ECCEE
Confidence 3221110 01 112234567889999999999988 46764
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00041 Score=56.22 Aligned_cols=60 Identities=13% Similarity=0.276 Sum_probs=38.0
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-CHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (569)
.++.|+++|||+|++..+.|.+.. +.+-.++++. +.+...++. ..+.+.++..++
T Consensus 23 ~v~ly~~~~Cp~C~~ak~~L~~~~--------i~y~~vdI~~~~~~~~~~~~----------------~~l~~~~g~~~v 78 (103)
T 3nzn_A 23 KVIMYGLSTCVWCKKTKKLLTDLG--------VDFDYVYVDRLEGKEEEEAV----------------EEVRRFNPSVSF 78 (103)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHT--------BCEEEEEGGGCCHHHHHHHH----------------HHHHHHCTTCCS
T ss_pred eEEEEcCCCCchHHHHHHHHHHcC--------CCcEEEEeeccCcccHHHHH----------------HHHHHhCCCCcc
Confidence 566699999999999998887651 3334445553 222111111 134456789999
Q ss_pred cEEEE
Q 008336 119 PHLVI 123 (569)
Q Consensus 119 P~~~l 123 (569)
|++++
T Consensus 79 P~l~i 83 (103)
T 3nzn_A 79 PTTII 83 (103)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 99776
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00015 Score=63.01 Aligned_cols=62 Identities=19% Similarity=0.341 Sum_probs=41.6
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC--HHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCc
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (569)
++.|+++|||+|++..+.|.++. +.+..+++|.+ ...+ ...+.+.+++.++
T Consensus 51 Vvvf~~~~Cp~C~~~k~~L~~~~--------i~~~~vdId~~~~~~~~-------------------~~~L~~~~g~~tv 103 (146)
T 2ht9_A 51 VVIFSKTSCSYCTMAKKLFHDMN--------VNYKVVELDLLEYGNQF-------------------QDALYKMTGERTV 103 (146)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHT--------CCCEEEEGGGCTTHHHH-------------------HHHHHHHHSCCCS
T ss_pred EEEEECCCChhHHHHHHHHHHcC--------CCeEEEECccCcCCHHH-------------------HHHHHHHhCCCCc
Confidence 34499999999999999888752 23444555533 1111 1357788999999
Q ss_pred cEEEEECCCCcEEE
Q 008336 119 PHLVILDENGKVLS 132 (569)
Q Consensus 119 P~~~lid~~G~i~~ 132 (569)
|+++ + +|+.+.
T Consensus 104 P~if-i--~G~~ig 114 (146)
T 2ht9_A 104 PRIF-V--NGTFIG 114 (146)
T ss_dssp CEEE-E--TTEEEE
T ss_pred CeEE-E--CCEEEe
Confidence 9985 4 676653
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00017 Score=61.31 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=42.0
Q ss_pred EEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccEEE
Q 008336 363 YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLV 442 (569)
Q Consensus 363 ~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~ 442 (569)
.|+++|||+|++..+.|.++. +.+..+.+|.+.+. .....++.+.+++.++|+++
T Consensus 31 vf~~~~Cp~C~~~~~~L~~~~---------i~~~~vdid~~~~~----------------~~~~~~l~~~~g~~~vP~l~ 85 (130)
T 2cq9_A 31 IFSKTSCSYCTMAKKLFHDMN---------VNYKVVELDLLEYG----------------NQFQDALYKMTGERTVPRIF 85 (130)
T ss_dssp EEECSSCSHHHHHHHHHHHHT---------CCCEEEETTTSTTH----------------HHHHHHHHHHHSSCCSSEEE
T ss_pred EEEcCCChHHHHHHHHHHHcC---------CCcEEEECcCCcCc----------------HHHHHHHHHHhCCCCcCEEE
Confidence 399999999999999887641 33445666654110 01123577889999999985
Q ss_pred EECCCCcEEEc
Q 008336 443 AIGPSGRTITK 453 (569)
Q Consensus 443 lid~~G~i~~~ 453 (569)
+ +|+.+..
T Consensus 86 -i--~G~~igg 93 (130)
T 2cq9_A 86 -V--NGTFIGG 93 (130)
T ss_dssp -E--TTEEEEE
T ss_pred -E--CCEEEcC
Confidence 4 6777653
|
| >4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00032 Score=63.29 Aligned_cols=41 Identities=17% Similarity=0.398 Sum_probs=34.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 400 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~ 400 (569)
++++||.|+.-.||+|+++.+.+.++.+++.+. +.++.+..
T Consensus 21 ~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~---~~~~~~~~ 61 (184)
T 4dvc_A 21 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG---AKFQKNHV 61 (184)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT---CEEEEEEC
T ss_pred CCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCc---eEEEEEec
Confidence 688999999999999999999999988888654 56666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 569 | ||||
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 2e-30 | |
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 1e-26 | |
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 4e-20 | |
| d1v5na_ | 89 | g.49.1.3 (A:) Pdi-like hypothetical protein At1g60 | 2e-29 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 4e-22 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 3e-18 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 1e-12 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 8e-15 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 3e-11 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 8e-07 | |
| d2b5xa1 | 143 | c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase | 1e-12 | |
| d2b5xa1 | 143 | c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase | 8e-11 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 2e-11 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 3e-11 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 5e-07 | |
| d1sena_ | 135 | c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 | 4e-07 | |
| d1sena_ | 135 | c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 | 1e-04 | |
| d1lu4a_ | 134 | c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc | 5e-07 | |
| d1lu4a_ | 134 | c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc | 2e-06 | |
| d1lu4a_ | 134 | c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc | 0.001 | |
| d1z6na1 | 166 | c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps | 6e-07 | |
| d1z6na1 | 166 | c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps | 7e-06 | |
| d1jfua_ | 176 | c.47.1.10 (A:) Membrane-anchored thioredoxin-like | 9e-07 | |
| d1jfua_ | 176 | c.47.1.10 (A:) Membrane-anchored thioredoxin-like | 8e-04 | |
| d1jfua_ | 176 | c.47.1.10 (A:) Membrane-anchored thioredoxin-like | 0.001 | |
| d2es7a1 | 119 | c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H | 3e-05 | |
| d1zzoa1 | 134 | c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacteri | 3e-05 | |
| d1zzoa1 | 134 | c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacteri | 7e-05 | |
| d2hfda1 | 132 | c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H | 4e-05 | |
| d2hfda1 | 132 | c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H | 4e-04 | |
| d2zcta1 | 237 | c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni | 2e-04 | |
| d1nhoa_ | 85 | c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik | 0.001 | |
| d1wp0a1 | 160 | c.47.1.10 (A:138-297) Thioredoxin-like protein Sco | 0.001 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 0.002 | |
| d1wjka_ | 100 | c.47.1.1 (A:) Thioredoxin-like structure containin | 0.002 | |
| d1zmaa1 | 115 | c.47.1.1 (A:1-115) Bacterocin transport accessory | 0.002 | |
| d1z5ye1 | 136 | c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG | 0.003 |
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 113 bits (284), Expect = 2e-30
Identities = 46/130 (35%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+++ + L SL GK + YFSASWC P + FTP L + Y + + +FEV+ +S DE
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDE 72
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS-DGGVEII 139
E FK Y++KMPWLA+PF D + + L F V IP LV ++ ++G +++ ++
Sbjct: 73 SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVV 132
Query: 140 REYGVEGYPF 149
++ + +P+
Sbjct: 133 KDPEAKDFPW 142
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 103 bits (258), Expect = 1e-26
Identities = 55/133 (41%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 342 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401
V+ + + LAGKT+ YFSA WCPP RAF P+LID YK E+ EV+ IS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNF-EVMLISWD 71
Query: 402 RDQTSFDEFFKGMPWLALPFGDA-RKASLSRKFKVSGIPMLVAIGP-SGRTITKEARDMI 459
F +++ MPWLALPF D L+ F V IP LV + SG IT +AR M+
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 131
Query: 460 AV-HGAEAYPFTE 471
A+ +P+
Sbjct: 132 VKDPEAKDFPWPN 144
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 84.5 bits (208), Expect = 4e-20
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 4/131 (3%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
V+ I++ L GKT+ YFS S S FTP+L++ Y+ K ++FE++LIS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWD 71
Query: 242 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPD-GKTLHSN-VAEA 298
+ E FK MPWLALPF+D K E L F++ ++PTLV + D G + +
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 131
Query: 299 IEEHGVGAFPF 309
+++ FP+
Sbjct: 132 VKDPEAKDFPW 142
|
| >d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89 | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: C1-like domain domain: Pdi-like hypothetical protein At1g60420 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 109 bits (273), Expect = 2e-29
Identities = 47/81 (58%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Query: 463 GAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVW 521
G+ TEER+KEI+ +Y+E+AK WP+ VKH LH EHEL L R VY+CD C+EEG +W
Sbjct: 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60
Query: 522 AFSCDECDFCLHPNCALGEDK 542
++ CDECDF LH CAL ED
Sbjct: 61 SYHCDECDFDLHAKCALNEDT 81
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 90.4 bits (223), Expect = 4e-22
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+ S +V L SL GK + LYFSASWC PC+ FTP+LAE Y + +FEV+ +S DE
Sbjct: 13 NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDE 72
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVL-SDGGVEII 139
++ F Y+ KMPWLA+PF T +L + F V IP L+ ++ + G ++ + +I
Sbjct: 73 NESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVI 132
Query: 140 REYGVEGYPFT 150
+ +P+
Sbjct: 133 EDPDGANFPWP 143
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 79.2 bits (194), Expect = 3e-18
Identities = 49/129 (37%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Query: 345 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
G+V + L GKT+ LYFSA WCPPCR F P L + Y+K EVV IS D ++
Sbjct: 16 SKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKN-FEVVLISWDENE 74
Query: 405 TSFDEFFKGMPWLALPFG-DARKASLSRKFKVSGIPMLVAIGP-SGRTITKEARDMIAV- 461
+ F +++ MPWLALPF + + L + F V IP L+ I +G I +AR +
Sbjct: 75 SDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIED 134
Query: 462 HGAEAYPFT 470
+P+
Sbjct: 135 PDGANFPWP 143
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 63.8 bits (154), Expect = 1e-12
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 185 SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 244
S ++S+ L GKT+ LYFS S FTP L E YEK ++FE+VLIS D+ E
Sbjct: 16 SKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-VAKNFEVVLISWDENE 74
Query: 245 ESFKRDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPD-GKTLHSNVAEAIEEH 302
F G MPWLALPF + + +L + F + ++PTL+ I D G + + + E
Sbjct: 75 SDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIED 134
Query: 303 GVGA-FPFT 310
GA FP+
Sbjct: 135 PDGANFPWP 143
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 69.7 bits (169), Expect = 8e-15
Identities = 53/131 (40%), Positives = 82/131 (62%), Gaps = 3/131 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+R +V++ SL GK + YFSASWC P + FTP L E Y++ +FEV+F + DE
Sbjct: 11 KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDE 70
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS-DGGVEII 139
+++ F GYF+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++ ++
Sbjct: 71 EEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLV 130
Query: 140 REYGVEGYPFT 150
++ E +P+
Sbjct: 131 KDPEGEQFPWK 141
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 59.7 bits (143), Expect = 3e-11
Identities = 51/130 (39%), Positives = 70/130 (53%), Gaps = 4/130 (3%)
Query: 345 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
+ G+V V LAGK + YFSA WCPP R F P+LI+ Y K E EVVF + D ++
Sbjct: 14 RGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNF-EVVFCTWDEEE 72
Query: 405 TSFDEFFKGMPWLALPFGDA-RKASLSRKFKVSGIPMLVAIGP-SGRTITKEARDMIAV- 461
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 73 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKD 132
Query: 462 HGAEAYPFTE 471
E +P+ +
Sbjct: 133 PEGEQFPWKD 142
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 46.6 bits (109), Expect = 8e-07
Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
+ ++ V L GK + YFS S + FTP+L+E Y+K + ++FE+V + D
Sbjct: 11 KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDK-FHESKNFEVVFCTWD 69
Query: 242 DEEESFKRDLGSMPWLALPFKDK-SREKLARYFELSTLPTLVIIGPD-GKTLHSN-VAEA 298
+EE+ F MPWLA+PF + +KL+++F + ++PTL+ + D G + + A
Sbjct: 70 EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 129
Query: 299 IEEHGVGAFPFTP 311
+++ FP+
Sbjct: 130 VKDPEGEQFPWKD 142
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Score = 63.0 bits (152), Expect = 1e-12
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 2/106 (1%)
Query: 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
NG+ + + K ++F + C C+ P + E ++ Q + + + EDD
Sbjct: 18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLD 77
Query: 86 FKGYFSKMPWLAVPFSDSETRDK-LDELFKVMGIPHLVILDENGKV 130
+ D L + F+ +P + D+ G++
Sbjct: 78 PGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQL 123
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Score = 58.0 bits (139), Expect = 8e-11
Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 8/133 (6%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEV-VFISSDRDQ 404
NG + K L++F + C C+ +P++ + K +++ + V + S D
Sbjct: 18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLD 77
Query: 405 TSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGA 464
+ + P +L+ F+ +P +G+ G
Sbjct: 78 PGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHF-------QAGG 130
Query: 465 EAYPFTEERMKEI 477
E+R+ +
Sbjct: 131 SGMKMLEKRVNRV 143
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 59.5 bits (143), Expect = 2e-11
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 4/110 (3%)
Query: 26 SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
++ + K K + F ASWC C + + + S E
Sbjct: 11 ADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHE 70
Query: 85 AFKGYFSKMP---WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
G F K ++ + + + P ++ ++G V
Sbjct: 71 KKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQ 120
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 59.1 bits (142), Expect = 3e-11
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 3/107 (2%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
+ V K L+ F A WCP C + L + + K + +L V +
Sbjct: 12 DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEK 71
Query: 406 ---SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 449
F +++ G+ + LP ++++ +S P IG G
Sbjct: 72 KDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGD 118
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 47.2 bits (111), Expect = 5e-07
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 3/122 (2%)
Query: 184 SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE 243
++D R SV + K + F S + + + K + V
Sbjct: 10 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLH 69
Query: 244 ---EESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE 300
+ F++ + + LP + +A+ +S P+ +IG DG E
Sbjct: 70 EKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINE 129
Query: 301 EH 302
Sbjct: 130 AQ 131
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (111), Expect = 4e-07
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 1/111 (0%)
Query: 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 416
G +++ WC C+A PK ++ +I E + + +V + + + D G
Sbjct: 25 GLPLMVIIHKSWCGACKALKPKFAES-TEISELSHNFVMVNLEDEEEPKDEDFSPDGGYI 83
Query: 417 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAY 467
+ F D +G P S + + ++ +A+
Sbjct: 84 PRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDAF 134
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 1e-04
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 1/108 (0%)
Query: 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP 99
+ + SWCG C+ P AE +F ++ + +E+ + +
Sbjct: 28 LMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRIL 87
Query: 100 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGY 147
F D E+ G P + + + G E + +
Sbjct: 88 FLDPS-GKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDAF 134
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 46.9 bits (110), Expect = 5e-07
Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 10/140 (7%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFV 77
F +G SL+GK + + W C + + + +
Sbjct: 4 RLQFTATTLSGAPFDGASLQGKPAVLWF--WTPWCPFCNAEAPSLSQVAAANPAVTFVGI 61
Query: 78 SGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVE 137
+ D A + + SK +D++ + + V P V +G
Sbjct: 62 ATRADVGAMQSFVSKYNLNFTNLNDAD--GVIWARYNVPWQPAFVFYRADGTS-----TF 114
Query: 138 IIREYGVEGYPFTVERIKEM 157
+ R+ +
Sbjct: 115 VNNPTAAMSQDELSGRVAAL 134
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 45.3 bits (106), Expect = 2e-06
Identities = 23/116 (19%), Positives = 33/116 (28%), Gaps = 8/116 (6%)
Query: 337 GD--LDF-VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESL 393
D L F +G + L GK +L+F WCP C A P L
Sbjct: 1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVG 60
Query: 394 EVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 449
Q+ ++ L G + ++ V P V G
Sbjct: 61 IATRADVGAMQSFVSKYNLNFTNLNDADGV-----IWARYNVPWQPAFVFYRADGT 111
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 37.3 bits (85), Expect = 0.001
Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 6/111 (5%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
F + G + L+GK + + F ++ + V I
Sbjct: 6 QFTATTLSGAPFDGASLQGK----PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGI 61
Query: 239 SLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
+ + + + + D + + + P V DG
Sbjct: 62 ATRADVGAMQSFVSKYNLNFTNLNDADGV-IWARYNVPWQPAFVFYRADGT 111
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 47.3 bits (111), Expect = 6e-07
Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 6/106 (5%)
Query: 26 SNGDQVKLDSLKGKIG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
+ +L ++ + L WC CQ L Q + E+ +S ++
Sbjct: 42 PSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRL---QPNIELAIISKGRAED 98
Query: 85 AFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
+ + + ++ + L + + P V+ +
Sbjct: 99 DLRQRLALERIAIPLVLVLD--EEFNLLGRFVERPQAVLDGGPQAL 142
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 44.2 bits (103), Expect = 7e-06
Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 16/126 (12%)
Query: 352 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411
+ + + LL WCP C+ L L A + ++E+ IS R + +
Sbjct: 49 LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRL----QPNIELAIISKGRAEDDLRQRL 104
Query: 412 KGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTE 471
+ + + + + A + + E
Sbjct: 105 ALERIAIPLVLV---------LDEEFNLLGRFVERPQAVLDGGPQALAAYKAGD---YLE 152
Query: 472 ERMKEI 477
+ ++
Sbjct: 153 HAIGDV 158
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 47.3 bits (111), Expect = 9e-07
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Query: 21 DF-LIRSNGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D ++G KL +GK L A+WC PC++ P L E+ +LS V
Sbjct: 38 DLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINI 97
Query: 79 GDEDDEAFKGYFSKMPWLAVPF---SDSETRDKLDELFKVMGIPHLVILDENGKVL 131
D E K + + + + ++ L + + +G+P V++D G +
Sbjct: 98 DTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEI 153
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 38.5 bits (88), Expect = 8e-04
Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 13/137 (9%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
+G +SD GKT+L+ A WC PCR +P +D + V RD
Sbjct: 45 DGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPA-LDELQGKLSGPNFEVVAINIDTRDPE 103
Query: 406 SFDEFFKGMPWLALPFGDARKASLSRKFKV----SGIPMLVAIGPSGRTITKEARDMIAV 461
F K L + + +KA + + K G+P V + P G IA
Sbjct: 104 KPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGC--------EIAT 155
Query: 462 HGAEAYPFTEERMKEID 478
A +E+ +K I
Sbjct: 156 IAGPAEWASEDALKLIR 172
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 37.7 bits (86), Expect = 0.001
Identities = 22/142 (15%), Positives = 40/142 (28%), Gaps = 13/142 (9%)
Query: 180 DF-VISSDGRKISVSDLEGKTIGLYFSMS---SYKASAEFTPRLVEVYEKLKGKGESFEI 235
D +DG+ +SD GKT+ + + + L + + I
Sbjct: 38 DLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINI 97
Query: 236 VLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295
+ + K + K K + L +PT V++ P G
Sbjct: 98 DTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGC------ 151
Query: 296 AEAIEEHGVGAFPFTPEKFAEL 317
G + E +L
Sbjct: 152 ---EIATIAGPAEWASEDALKL 170
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Score = 41.5 bits (97), Expect = 3e-05
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 29 DQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
D G I L ++AE+ E Q D++V ++ +
Sbjct: 22 DDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFP-QFDWQVAVADLEQSEA 76
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.0 bits (97), Expect = 3e-05
Identities = 23/116 (19%), Positives = 34/116 (29%), Gaps = 5/116 (4%)
Query: 335 VSGDLDF-VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESL 393
V L F +G L GK +L+F A WCP C+ P + E
Sbjct: 2 VPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVG 61
Query: 394 EVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 449
Q +++ S+ F V+ P + P G
Sbjct: 62 VAGLDQVPAMQEFVNKYPVKTFTQLADT----DGSVWANFGVTQQPAYAFVDPHGN 113
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.8 bits (94), Expect = 7e-05
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 6/112 (5%)
Query: 21 DF-LIRSNGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
F +G +SL GK + F A WC CQ P++ +V V +
Sbjct: 7 QFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD 66
Query: 79 GDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
+ F + + + +D F V P +D +G V
Sbjct: 67 QVPAMQEFVNKYPVKTFTQLADTDGSVWAN----FGVTQQPAYAFVDPHGNV 114
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Score = 41.2 bits (96), Expect = 4e-05
Identities = 10/86 (11%), Positives = 22/86 (25%), Gaps = 12/86 (13%)
Query: 318 AEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLP 377
A QR T + LD + + V +LL P
Sbjct: 9 ALWQRMLARGWT---PVSESRLDDWLTQAPDGV---------VLLSSDPKRTPEVSDNPV 56
Query: 378 KLIDAYKKIKERNESLEVVFISSDRD 403
+ + ++ + + + +
Sbjct: 57 MIGELLREFPDYTWQVAIADLEQSEA 82
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Score = 38.5 bits (89), Expect = 4e-04
Identities = 4/43 (9%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
L ++ E+ E ++V ++ +
Sbjct: 41 LSSDPKRTPEVSDNPVMIGELLREFP-DYTWQVAIADLEQSEA 82
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Score = 40.6 bits (94), Expect = 2e-04
Identities = 21/165 (12%), Positives = 50/165 (30%), Gaps = 13/165 (7%)
Query: 340 DFVVGKNGGKVPVSD---LAGKTILLYF-SAHWCPPCRAFLPKLIDAYKKIKERNESLEV 395
+ V + G + + D GK +L+ A + P C Y+ + L
Sbjct: 9 EMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIG 68
Query: 396 VFISSDRDQTSFDEFF--KGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453
+ + S + E+ + P + +++R+ + +
Sbjct: 69 LSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDA 128
Query: 454 EAR-DMIAVHGAEAYPFTEERMKEIDG-QYNEMAK-----GWPEN 491
+ + E +E ++ + + + K WP N
Sbjct: 129 RGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNN 173
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 35.8 bits (82), Expect = 0.001
Identities = 11/101 (10%), Positives = 25/101 (24%), Gaps = 27/101 (26%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101
F++ C C ++ E + V
Sbjct: 6 EVFTSPTCPYCPMAIEVVDEA--------------------------KKEFGDKIDVEKI 39
Query: 102 DSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREY 142
D + + +M +P + I + + + E + E
Sbjct: 40 DIMVDREKAIEYGLMAVPAIAI-NGVVRFVGAPSREELFEA 79
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 0.001
Identities = 26/150 (17%), Positives = 43/150 (28%), Gaps = 14/150 (9%)
Query: 21 DF-LIRSNGDQVKLDSLKGKI-GLYFSASWC-GPCQRFTPILAEVYNELSRQGD------ 71
F L G++ G+ +YF + C C + +V +E+
Sbjct: 2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTP 61
Query: 72 -FEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
F I D + P L E D++ ++V P DE+ V
Sbjct: 62 LFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIV 121
Query: 131 LSDGGVEIIREYG----VEGYPFTVERIKE 156
+ +I G G I
Sbjct: 122 DHTIIMYLIGPDGEFLDYFGQNKRKGEIAA 151
|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: PHD domain domain: PHD finger protein At5g26210 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 34.6 bits (79), Expect = 0.002
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 12/59 (20%)
Query: 504 DRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGEDKGTKDDKSEEQNPSKEGWRCD 562
+CG C W CD C+ H C + + + ++C
Sbjct: 7 GQCGA--CGESYAADEFWIC-CDLCEMWFHGKCV---------KITPARAEHIKQYKCP 53
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.5 bits (81), Expect = 0.002
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMP------- 94
F+ + C C +L + + + ++ E+ ++ Y +P
Sbjct: 20 TLFTKAPCPLCDEAKEVLQPYKDRF----ILQEVDITLPENSTWYERYKFDIPVFHLNGQ 75
Query: 95 -WLAVPFSDSETRDKLDEL 112
+ + S+ +L +L
Sbjct: 76 FLMMHRVNTSKLEKQLRKL 94
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Score = 36.1 bits (82), Expect = 0.002
Identities = 11/63 (17%), Positives = 17/63 (26%)
Query: 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 416
+T + CP CR F L + K + S D +F +
Sbjct: 26 KETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTV 85
Query: 417 LAL 419
Sbjct: 86 PGF 88
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Score = 36.1 bits (82), Expect = 0.003
Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 6/97 (6%)
Query: 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 416
GK +LL A WCP RA L + ++ D+ + K +
Sbjct: 20 GKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVV------GMNYKDDRQKAISWLKELGN 73
Query: 417 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453
L V G P I +G +
Sbjct: 74 PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYR 110
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 569 | |||
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.91 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.9 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.9 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.9 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.89 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.88 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.88 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.87 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.87 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.87 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.85 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.85 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.85 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.84 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.83 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.83 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.82 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.81 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.81 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.8 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.8 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.77 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.76 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.76 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.75 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 99.74 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.74 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 99.73 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.72 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.72 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 99.72 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 99.7 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.7 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.7 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 99.7 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.67 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 99.67 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 99.67 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.67 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.65 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 99.64 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.64 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.62 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 99.61 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 99.61 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.6 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.6 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 99.59 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.59 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.58 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 99.58 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.58 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.58 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.58 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.57 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.57 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.55 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.55 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.54 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 99.54 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.54 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.54 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.53 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.52 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.51 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.51 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.51 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.5 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.5 | |
| d1v5na_ | 89 | Pdi-like hypothetical protein At1g60420 {Thale cre | 99.5 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.5 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 99.5 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.49 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.49 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.47 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.45 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.44 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.44 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.44 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.44 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.44 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.43 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 99.42 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.42 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.42 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.42 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.41 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.41 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.4 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.38 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 99.37 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.37 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.37 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.37 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.37 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.36 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.35 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.35 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.34 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.34 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.32 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.32 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.32 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.32 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.31 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.31 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.31 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.31 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.3 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.3 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.3 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.29 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.29 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.27 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.24 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.23 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.21 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.21 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.18 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.18 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.16 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 99.16 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.14 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 99.13 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.1 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.09 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 99.08 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 99.06 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 99.05 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 99.05 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.0 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 98.97 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.91 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 98.91 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 98.88 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 98.86 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 98.78 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.67 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 98.66 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.61 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 98.56 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.56 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 98.55 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 98.45 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 98.42 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 98.41 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 98.12 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.75 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.72 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 97.71 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.63 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 97.6 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 97.58 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.57 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 97.42 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 97.33 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.29 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 97.27 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.12 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 97.1 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 96.96 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 96.95 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 96.88 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 96.86 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 96.66 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 96.12 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 95.83 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 95.54 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 95.25 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 95.24 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 95.14 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 95.03 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 94.81 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 94.6 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 94.56 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 94.56 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 94.55 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 94.48 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 94.14 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 93.89 | |
| d1kbea_ | 49 | Kinase suppressor of Ras, Ksr {Mouse (Mus musculus | 93.35 | |
| d1faqa_ | 52 | RAF-1 {Human (Homo sapiens) [TaxId: 9606]} | 93.17 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 92.81 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 92.25 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 91.86 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 91.15 | |
| d1tbna_ | 66 | Protein kinase c-gamma {Rat (Rattus rattus) [TaxId | 87.26 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 86.61 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 86.13 | |
| d1wika_ | 109 | Thioredoxin-like protein 2 {Mouse (Mus musculus) [ | 85.87 | |
| d1xa6a3 | 62 | Beta-chimaerin, middle domain {Human (Homo sapiens | 85.82 | |
| d2fc7a1 | 69 | Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu | 85.01 | |
| d1r79a_ | 84 | Diacylglycerol kinase delta {Human (Homo sapiens) | 82.53 |
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.91 E-value=1.6e-24 Score=189.53 Aligned_cols=138 Identities=38% Similarity=0.734 Sum_probs=119.2
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
+.+|..+|++ .+..+|.+++|++++|| ++|+|||+||++|+.++|.|.++++++..+.++.+++|+.|.+.+.+++++
T Consensus 2 ~~~~k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~ 81 (144)
T d1o73a_ 2 SGLAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYY 81 (144)
T ss_dssp CGGGGTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHH
T ss_pred CCcccCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHH
Confidence 5678999999 55677888999999999 999999999999999999999999999755569999999999999999999
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCC-CcEEEcCCc-ceeecccCCCCCcc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN-GKVLSDGGV-EIIREYGVEGYPFT 150 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~-G~i~~~~~~-~~~~~~~~~~~~~~ 150 (569)
.+.++..+++........+.+.|++.++|+++|||++ |+|+..++. ++..+.....+||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~~~~~~d~~~~~fpw~ 143 (144)
T d1o73a_ 82 GKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWP 143 (144)
T ss_dssp TTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred HhccccceeeeccchHHHHHHHcCCCcCCEEEEEECCCCEEEeecchhhhhhCcccccCCCC
Confidence 9998888777766666679999999999999999997 999998763 34556666666663
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.90 E-value=6.8e-24 Score=185.04 Aligned_cols=128 Identities=36% Similarity=0.766 Sum_probs=113.4
Q ss_pred eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccC
Q 008336 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101 (569)
Q Consensus 23 ~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 101 (569)
+++.+|..+++++++|| |+|+|||+||++|+.++|.|.+++++++++.+++|++|+.|.+.+.+++|++++++.++++.
T Consensus 13 ~l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~ 92 (144)
T d1i5ga_ 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFE 92 (144)
T ss_dssp EEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTT
T ss_pred hccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeE
Confidence 45678899999999999 99999999999999999999999999987667999999999999999999999999998888
Q ss_pred CchhHHHHHHhcCCCCccEEEEECCC-CcEEEcCCccee-ecccCCCCCcc
Q 008336 102 DSETRDKLDELFKVMGIPHLVILDEN-GKVLSDGGVEII-REYGVEGYPFT 150 (569)
Q Consensus 102 ~~~~~~~l~~~~~v~~~P~~~lid~~-G~i~~~~~~~~~-~~~~~~~~~~~ 150 (569)
+......+.+.|+|.++|+++|||++ |+|+..+|...+ .+.....+||.
T Consensus 93 d~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v~~d~~~~~fpw~ 143 (144)
T d1i5ga_ 93 DRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWP 143 (144)
T ss_dssp CHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred ChHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHHhhCcccccCCCC
Confidence 87776778999999999999999986 999998876654 34555666663
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.90 E-value=1.8e-23 Score=182.33 Aligned_cols=128 Identities=42% Similarity=0.836 Sum_probs=111.7
Q ss_pred eecCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCccccc
Q 008336 342 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPF 421 (569)
Q Consensus 342 ~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~ 421 (569)
+++.+|..+++++++||+|+|+|||+||+||++++|.|++++++++++ .+++|++|+.|.+.+.+++++++++|..+++
T Consensus 13 ~l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~-~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~ 91 (144)
T d1i5ga_ 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAEDFKDYYAKMPWLALPF 91 (144)
T ss_dssp EEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred hccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhc-cCcEEEEEeccccHHHHHHHHHhCCCCceee
Confidence 347789999999999999999999999999999999999999999864 4699999999999999999999999988887
Q ss_pred Cchh-hHHHHHhcCCCCccEEEEECCC-CcEEEccchhhHhh-cCCCCCCCC
Q 008336 422 GDAR-KASLSRKFKVSGIPMLVAIGPS-GRTITKEARDMIAV-HGAEAYPFT 470 (569)
Q Consensus 422 ~~d~-~~~l~~~~~v~~~Pt~~lid~~-G~i~~~~~~~~~~~-~g~~~~p~~ 470 (569)
.... ...+.+.|+|+++|+++|||++ |+|+.++++..+.. ..+..|||.
T Consensus 92 ~d~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v~~d~~~~~fpw~ 143 (144)
T d1i5ga_ 92 EDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWP 143 (144)
T ss_dssp TCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred EChHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHHhhCcccccCCCC
Confidence 6544 3468899999999999999996 99999998887643 455667763
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.90 E-value=2.5e-23 Score=181.82 Aligned_cols=134 Identities=37% Similarity=0.733 Sum_probs=114.2
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
...|++.. ..+|.+++|++++||+|+|+|||+||++|++++|.|++++++++.+ .++.|++|+.|.+.+.++++++++
T Consensus 6 k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~ 84 (144)
T d1o73a_ 6 KYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDYYGKM 84 (144)
T ss_dssp GTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTC
T ss_pred cCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhc-cCeEEEEEecchhHHHHHHHHHhc
Confidence 34577765 7788889999999999999999999999999999999999999643 369999999999999999999999
Q ss_pred CCcccccCch-hhHHHHHhcCCCCccEEEEECCC-CcEEEccchhh-HhhcCCCCCCCC
Q 008336 415 PWLALPFGDA-RKASLSRKFKVSGIPMLVAIGPS-GRTITKEARDM-IAVHGAEAYPFT 470 (569)
Q Consensus 415 ~~~~~~~~~d-~~~~l~~~~~v~~~Pt~~lid~~-G~i~~~~~~~~-~~~~g~~~~p~~ 470 (569)
+|..+++..+ ....+.+.|+|+++|+++|||++ |+|+.++++.. ...+.+..|||.
T Consensus 85 ~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~~~~~~d~~~~~fpw~ 143 (144)
T d1o73a_ 85 PWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWP 143 (144)
T ss_dssp SSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred cccceeeeccchHHHHHHHcCCCcCCEEEEEECCCCEEEeecchhhhhhCcccccCCCC
Confidence 9988887553 45678999999999999999997 99999987654 444556667763
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=1.2e-23 Score=191.57 Aligned_cols=147 Identities=10% Similarity=0.191 Sum_probs=121.1
Q ss_pred ccCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhH
Q 008336 335 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTS 406 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~ 406 (569)
....|+|.+ +.+|+.++|++++||+|||+||++|||+|++++|.|.+++++|+++ +.+++|++. ...+.
T Consensus 9 G~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~---v~~v~i~snd~~~~~~~~~e~ 85 (187)
T d2cvba1 9 ESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAPEK 85 (187)
T ss_dssp TCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSHHH
T ss_pred CCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc---ceeeeeeccccccccccchHH
Confidence 445799988 9999999999999999999999999999999999999999999764 888888753 24567
Q ss_pred HHHHHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhc
Q 008336 407 FDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 486 (569)
Q Consensus 407 ~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~ 486 (569)
++++.+.++ +.+|++.|.++.+++.|++.++|++||||++|+|++++..++. ++. .......+|.++|+++++
T Consensus 86 ~~~~~~~~~-~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~y~G~idd~--~~~----~~~~~~~~L~~Ai~~ll~ 158 (187)
T d2cvba1 86 MAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDN--PKD----PSKVQSHDLEAAIEALLR 158 (187)
T ss_dssp HHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSC--TTC----GGGCCCCHHHHHHHHHHT
T ss_pred HHHHHHHhC-CcceeeechhhhhcccccccceeeEEEEcCCCeEEEEeeecCC--CCC----CCCCCHHHHHHHHHHHHc
Confidence 788888887 7899999999999999999999999999999999998654431 110 111222467888999998
Q ss_pred CCCcc
Q 008336 487 GWPEN 491 (569)
Q Consensus 487 ~~~~~ 491 (569)
+.+..
T Consensus 159 g~~~~ 163 (187)
T d2cvba1 159 GEEPP 163 (187)
T ss_dssp TCCCC
T ss_pred CCCCC
Confidence 87643
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.88 E-value=1.4e-22 Score=177.30 Aligned_cols=136 Identities=40% Similarity=0.788 Sum_probs=118.2
Q ss_pred ccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHh
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~ 92 (569)
+|..+|+| +++.+|+++++++++|| |+|+|||+||++|+.++|.|.++++++....++.+++|+.|.+.+.+..++..
T Consensus 2 ~~k~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~ 81 (144)
T d1o8xa_ 2 LDKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAK 81 (144)
T ss_dssp GGGTSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTT
T ss_pred CCCCCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhh
Confidence 57889999 56789999999999999 99999999999999999999999999987767999999999999999999999
Q ss_pred CCCcccccCCchhHHHHHHhcCCCCccEEEEECCC-CcEEEcCCcce-eecccCCCCCcc
Q 008336 93 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN-GKVLSDGGVEI-IREYGVEGYPFT 150 (569)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~-G~i~~~~~~~~-~~~~~~~~~~~~ 150 (569)
..+...++...+....+.+.|+|+++|+++|||++ |+|+..++... ..+.....+||.
T Consensus 82 ~~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~~~~d~~~~~~~w~ 141 (144)
T d1o8xa_ 82 MPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWK 141 (144)
T ss_dssp CSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCC
T ss_pred ccccceeeecccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhhhhhCcccccCCCC
Confidence 88888877666666789999999999999999987 89998876543 344555556664
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.88 E-value=2.5e-22 Score=173.35 Aligned_cols=114 Identities=22% Similarity=0.361 Sum_probs=104.6
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
...+|.+ +.+|+++++++++||++||+||++||++|++++|.|.++++++++ ..+++|+.++.....+.++.+++
T Consensus 4 ~~~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~----~~~v~v~~~d~~~~~~~~~~~~~ 79 (134)
T d1zzoa1 4 AQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVPAMQEFVNKYP 79 (134)
T ss_dssp GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSCHHHHHHHHHHTT
T ss_pred CCcceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcc----cccccccccccchhHHHHHHhcC
Confidence 3468988 999999999999999999999999999999999999999998754 68888898888899999999999
Q ss_pred CcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 416 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 416 ~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+..+|.+.|....+.+.|++.++|+++|||++|+|++..
T Consensus 80 ~~~~~~l~D~~~~~~~~~~v~~~P~~~iiD~~G~i~~~~ 118 (134)
T d1zzoa1 80 VKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVR 118 (134)
T ss_dssp CTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred CcceeEEeeccchHHHhcCCCccCeEEEECCCCeEEEEE
Confidence 888999999888999999999999999999999997753
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.87 E-value=1.4e-22 Score=174.68 Aligned_cols=111 Identities=22% Similarity=0.355 Sum_probs=102.7
Q ss_pred Ccccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCC
Q 008336 338 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 416 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 416 (569)
.++|++ +.+|+++++++++||++||+||++|||+|++++|.|++++++++ ++.+++|+.+.+.+.+++|+++++
T Consensus 4 ~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~----~v~~v~v~~~~~~~~~~~~~~~~~- 78 (134)
T d1lu4a_ 4 RLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP----AVTFVGIATRADVGAMQSFVSKYN- 78 (134)
T ss_dssp GGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHHHHHHHHHT-
T ss_pred CCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc----cccccccccccchhhhhhhhhhhc-
Confidence 478988 99999999999999999999999999999999999999988754 589999999999999999999987
Q ss_pred cccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 417 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 417 ~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
+.+|+..|....+++.|+++++|+++|||++|+++..
T Consensus 79 ~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~v 115 (134)
T d1lu4a_ 79 LNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFV 115 (134)
T ss_dssp CCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred cccceeeCchHHHHHHcCCCcCCEEEEEeCCCeEEEE
Confidence 7889888888999999999999999999999999875
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.87 E-value=6.4e-22 Score=171.37 Aligned_cols=131 Identities=24% Similarity=0.524 Sum_probs=116.2
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
..|+|.+ +.+|+++++++++||+++|+||++||++|.++++.++++++++.++ ++.+++|+++.+.+.+++|+++++
T Consensus 4 ~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~~~~ 81 (137)
T d1st9a_ 4 DAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ--GVEIVAVNVGESKIAVHNFMKSYG 81 (137)
T ss_dssp ECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCCHHHHHHHHHHTT
T ss_pred cCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeeccccccccccccccc--ccccccccccchhhhHHHHHHHcC
Confidence 4689988 9999999999999999999999999999999999999999999876 699999999989999999999887
Q ss_pred CcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHh
Q 008336 416 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQY 481 (569)
Q Consensus 416 ~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l 481 (569)
+.+|++.|....+++.|++.++|+++|||++|+|+++..+ +.+++.++++.+.|
T Consensus 82 -~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G-----------~~~~~~~~~~l~~l 135 (137)
T d1st9a_ 82 -VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTG-----------TMTESMIHDYMNLI 135 (137)
T ss_dssp -CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEES-----------CCCHHHHHHHHHHH
T ss_pred -CCccccccccchhhhhhhccccceEEEECCCCEEEEEEEC-----------CCCHHHHHHHHHhh
Confidence 6688888888899999999999999999999999998543 24566666665544
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.87 E-value=7.5e-22 Score=172.53 Aligned_cols=134 Identities=37% Similarity=0.765 Sum_probs=116.3
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
..|+|.+ +.+|+++++++++||+|+|+||++||++|+.++|.|.++++++..+ .++.+++|+.|.+.+.+..++....
T Consensus 5 ~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~-~~~~~v~is~d~~~~~~~~~~~~~~ 83 (144)
T d1o8xa_ 5 YLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES-KNFEVVFCTWDEEEDGFAGYFAKMP 83 (144)
T ss_dssp TSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHHTTCS
T ss_pred CCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccc-cccccccccccccHHHHHHHHhhcc
Confidence 3478877 9999999999999999999999999999999999999999999754 3699999999999999999999999
Q ss_pred CcccccCc-hhhHHHHHhcCCCCccEEEEECCC-CcEEEccchhhH-hhcCCCCCCCCH
Q 008336 416 WLALPFGD-ARKASLSRKFKVSGIPMLVAIGPS-GRTITKEARDMI-AVHGAEAYPFTE 471 (569)
Q Consensus 416 ~~~~~~~~-d~~~~l~~~~~v~~~Pt~~lid~~-G~i~~~~~~~~~-~~~g~~~~p~~~ 471 (569)
|..+++.. +....+.+.|+|+++|+++|||++ |+|+..+++..+ .......|||.+
T Consensus 84 ~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~~~~d~~~~~~~w~~ 142 (144)
T d1o8xa_ 84 WLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKD 142 (144)
T ss_dssp SEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCC
T ss_pred ccceeeecccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhhhhhCcccccCCCCC
Confidence 98888765 566789999999999999999998 899998876654 334556667654
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=1.1e-21 Score=178.60 Aligned_cols=120 Identities=13% Similarity=0.239 Sum_probs=105.6
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDE 84 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~ 84 (569)
.+|+++||| +.+.+|+.++|++++|| +||+|||+|||+|++++|.|.+++++|++ ++.+++|+.. ...+
T Consensus 7 ~vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~--~v~~v~i~snd~~~~~~~~~e 84 (187)
T d2cvba1 7 PLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRG--KVAFVGINANDYEKYPEDAPE 84 (187)
T ss_dssp CTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT--TEEEEEEECCCTTTCGGGSHH
T ss_pred CCCCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccc--cceeeeeeccccccccccchH
Confidence 579999999 66899999999999999 99999999999999999999999999975 3888888753 3568
Q ss_pred HHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcCCcc
Q 008336 85 AFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVE 137 (569)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~ 137 (569)
.++++.+++++.+..+.|.+. .+.+.|++.++|++||||++|+|+++...+
T Consensus 85 ~~~~~~~~~~~~~p~l~D~~~--~~~~~~~v~~~P~~~liD~~G~i~y~G~id 135 (187)
T d2cvba1 85 KMAAFAEEHGIFFPYLLDETQ--EVAKAYRALRTPEVFLFDERRLLRYHGRVN 135 (187)
T ss_dssp HHHHHHHHHTCCSCEEECSSS--HHHHHTTCCEESEEEEECTTCBEEEEECSS
T ss_pred HHHHHHHHhCCcceeeechhh--hhcccccccceeeEEEEcCCCeEEEEeeec
Confidence 899999999988777777654 689999999999999999999999875443
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=3.8e-21 Score=166.40 Aligned_cols=115 Identities=28% Similarity=0.538 Sum_probs=104.1
Q ss_pred cCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhC
Q 008336 16 SSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (569)
Q Consensus 16 g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~ 93 (569)
|+++|+| +.+.+|+.+++++++|| ++|+||++||++|+.++|.+.++++++.+.+ +.+++|+.+++.+.+++|++++
T Consensus 2 G~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~-~~~v~i~~~~~~~~~~~~~~~~ 80 (137)
T d1st9a_ 2 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG-VEIVAVNVGESKIAVHNFMKSY 80 (137)
T ss_dssp CEECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT-EEEEEEEESCCHHHHHHHHHHT
T ss_pred cCcCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccccc-cccccccccchhhhHHHHHHHc
Confidence 7899999 55789999999999999 9999999999999999999999999998875 9999999999999999999999
Q ss_pred CCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 94 PWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
++.+..+.+.. ..+.+.|++.++|+++|+|++|+++.+
T Consensus 81 ~~~~~~~~d~~--~~~~~~~~v~~~P~~~liD~~G~i~~~ 118 (137)
T d1st9a_ 81 GVNFPVVLDTD--RQVLDAYDVSPLPTTFLINPEGKVVKV 118 (137)
T ss_dssp TCCSCEEEETT--SHHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred CCCcccccccc--chhhhhhhccccceEEEECCCCEEEEE
Confidence 87766554433 368999999999999999999999874
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.85 E-value=4.9e-21 Score=164.93 Aligned_cols=112 Identities=21% Similarity=0.312 Sum_probs=100.0
Q ss_pred cCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhC
Q 008336 16 SSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (569)
Q Consensus 16 g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~ 93 (569)
|+.+++| +.+++|+++++++++|| ++|+|||+|||+|+.++|.|.+++++++ ++.+++|+.+.+.+.+++|++++
T Consensus 1 ~d~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~---~v~~v~v~~~~~~~~~~~~~~~~ 77 (134)
T d1lu4a_ 1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKY 77 (134)
T ss_dssp CGGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHH
T ss_pred CCCCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc---cccccccccccchhhhhhhhhhh
Confidence 5778999 56789999999999999 9999999999999999999999998763 48899999999999999999999
Q ss_pred CCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 94 PWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
+..+..+.+.. ..+.+.|++.++|+++|||++|+++.
T Consensus 78 ~~~~p~~~d~~--~~~~~~~~v~~~P~~~lid~~G~i~~ 114 (134)
T d1lu4a_ 78 NLNFTNLNDAD--GVIWARYNVPWQPAFVFYRADGTSTF 114 (134)
T ss_dssp TCCSEEEECTT--SHHHHHTTCCSSSEEEEECTTSCEEE
T ss_pred ccccceeeCch--HHHHHHcCCCcCCEEEEEeCCCeEEE
Confidence 88766665544 36899999999999999999999875
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.84 E-value=5.2e-21 Score=166.91 Aligned_cols=110 Identities=20% Similarity=0.340 Sum_probs=99.8
Q ss_pred cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-----ChhHHHHHHhcCCCcc
Q 008336 344 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-----DQTSFDEFFKGMPWLA 418 (569)
Q Consensus 344 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-----~~~~~~~~~~~~~~~~ 418 (569)
+.+|+++++++++||++||+|||+|||+|++++|.|++++++++.. ++.+++|+.+. ......++.....+..
T Consensus 10 ~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (143)
T d2fy6a1 10 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKWYAGLNYPK 87 (143)
T ss_dssp ETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGT--TSEEEEEECTTSTTCCCTTHHHHHHTTSCCTT
T ss_pred CCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccC--CcEEEEEeeeecccccchhhhhhhhhhcCCcc
Confidence 7899999999999999999999999999999999999999999865 68999998753 3456778888888899
Q ss_pred cccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccc
Q 008336 419 LPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 419 ~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
+|++.|..+.+++.|+++++|+++|||++|+|+++..
T Consensus 88 ~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~ 124 (143)
T d2fy6a1 88 LPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVK 124 (143)
T ss_dssp SCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEE
T ss_pred cccccccchHHHHHcCCCccCEEEEECCCCEEEEEEE
Confidence 9999999999999999999999999999999998854
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=5.6e-21 Score=165.08 Aligned_cols=108 Identities=22% Similarity=0.212 Sum_probs=95.6
Q ss_pred ecCCCCceecccC-CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCccccc
Q 008336 343 VGKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPF 421 (569)
Q Consensus 343 ~~~~g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~ 421 (569)
+|..|+.++.+.+ +||+|||+|||+||+||++++|.|+++++. ++.+++++.+.+......++.+.++..+++
T Consensus 5 ld~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~------~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (136)
T d1z5ye1 5 LDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALS 78 (136)
T ss_dssp SSSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHT------TCCEEEEEESCCHHHHHHHHHHHCCCCSEE
T ss_pred ccCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhhh------hhhhcccccccchhhhHHHHHHcCCcccee
Confidence 4677999999998 899999999999999999999999887542 488999999998888999998888777777
Q ss_pred CchhhHHHHHhcCCCCccEEEEECCCCcEEEccch
Q 008336 422 GDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 422 ~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~ 456 (569)
..|.++.+++.|++.++|+++|||++|+|+.++.|
T Consensus 79 ~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G 113 (136)
T d1z5ye1 79 LFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAG 113 (136)
T ss_dssp EEESSCHHHHHHTCCSBSEEEEECTTSCEEEEEES
T ss_pred ecccchhHHHhcccCCcceEEEEcCCCEEEEEEEc
Confidence 77888899999999999999999999999998543
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=3.3e-20 Score=159.80 Aligned_cols=109 Identities=25% Similarity=0.406 Sum_probs=95.0
Q ss_pred CCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcc
Q 008336 20 RDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLA 97 (569)
Q Consensus 20 pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~ 97 (569)
.|| +.+.+|+++++++++|| +||+|||+|||+|++++|.|.+++++++ ++.++.|+.++..+..++++.++++..
T Consensus 6 ~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~---~~~~v~v~~~d~~~~~~~~~~~~~~~~ 82 (134)
T d1zzoa1 6 LQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP---EVTFVGVAGLDQVPAMQEFVNKYPVKT 82 (134)
T ss_dssp GCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHTTCTT
T ss_pred cceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhc---ccccccccccccchhHHHHHHhcCCcc
Confidence 468 56789999999999999 9999999999999999999999999875 366888898889999999999999865
Q ss_pred ccc-CCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 98 VPF-SDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 98 ~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
.+. .|.+ ..+.+.|++.++|++++||++|+|...
T Consensus 83 ~~~l~D~~--~~~~~~~~v~~~P~~~iiD~~G~i~~~ 117 (134)
T d1zzoa1 83 FTQLADTD--GSVWANFGVTQQPAYAFVDPHGNVDVV 117 (134)
T ss_dssp SEEEECTT--CHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred eeEEeecc--chHHHhcCCCccCeEEEECCCCeEEEE
Confidence 544 4433 368999999999999999999998753
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.82 E-value=1.3e-20 Score=164.43 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=94.3
Q ss_pred cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCc
Q 008336 344 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 423 (569)
Q Consensus 344 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~ 423 (569)
+.++..+++++++||++||+||++||++|+.++|.+.++++.+ ++.+++|+.+......+++..++++...++..
T Consensus 18 ~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (144)
T d1knga_ 18 NVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK-----RFQLVGINYKDAADNARRFLGRYGNPFGRVGV 92 (144)
T ss_dssp TEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT-----TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEE
T ss_pred CCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc-----CceeEEEEeeechHHHHHHHHHcCCccccccc
Confidence 3445789999999999999999999999999999998776554 47899999998888999999988876667788
Q ss_pred hhhHHHHHhcCCCCccEEEEECCCCcEEEccc
Q 008336 424 ARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 424 d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
|..+.+.+.|++.++|+++|||++|+|+++..
T Consensus 93 d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~ 124 (144)
T d1knga_ 93 DANGRASIEWGVYGVPETFVVGREGTIVYKLV 124 (144)
T ss_dssp ETTSHHHHHTTCCSSCEEEEECTTSBEEEEEE
T ss_pred cccchhhhhcCccccceEEEEcCCCeEEEEEe
Confidence 88889999999999999999999999999854
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.81 E-value=8.2e-20 Score=165.02 Aligned_cols=116 Identities=31% Similarity=0.470 Sum_probs=100.5
Q ss_pred Ccccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-ChhHHHHHHhcCC
Q 008336 338 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-DQTSFDEFFKGMP 415 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~ 415 (569)
.|+|.+ +.+|+.++|++++||++||+||++||++|+.+++.++++++++..+ ++.|++|++|. +.+.+++|+++++
T Consensus 36 ~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~ 113 (176)
T d1jfua_ 36 LPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP--NFEVVAINIDTRDPEKPKTFLKEAN 113 (176)
T ss_dssp CCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT--TEEEEEEECCCSCTTHHHHHHHHTT
T ss_pred CCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhcccccccc--ccccccccccccchhhhhhhHhhhC
Confidence 589988 9999999999999999999999999999999999999999999765 68999999884 5778999999988
Q ss_pred CcccccCchhhHH----HHHhcCCCCccEEEEECCCCcEEEccc
Q 008336 416 WLALPFGDARKAS----LSRKFKVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 416 ~~~~~~~~d~~~~----l~~~~~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
+..+++..+.... +...|++.++|+++|||++|+|+.+..
T Consensus 114 ~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~~ 157 (176)
T d1jfua_ 114 LTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIA 157 (176)
T ss_dssp CCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEE
T ss_pred CcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEEE
Confidence 7666666654444 445578899999999999999998853
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.81 E-value=9.9e-20 Score=158.52 Aligned_cols=116 Identities=18% Similarity=0.236 Sum_probs=101.5
Q ss_pred cCCcccee-c--CCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-----ChhHH
Q 008336 336 SGDLDFVV-G--KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-----DQTSF 407 (569)
Q Consensus 336 ~~~~~f~~-~--~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-----~~~~~ 407 (569)
.+.|+|.. + .+|+.++++.+.||+++|+||++||++|++++|.|++++++++++ +.+++|+++. +.+.+
T Consensus 5 ~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~---~~~i~v~~~~~~~~~~~~~~ 81 (143)
T d2b5xa1 5 QPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPGKI 81 (143)
T ss_dssp CBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHHHH
T ss_pred CcCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc---ccceeEEeeccccccchhhh
Confidence 34678864 3 489999999999999999999999999999999999999999864 8999998753 45567
Q ss_pred HHHHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccc
Q 008336 408 DEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 408 ~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
++++++++ +.+|++.|.+..+++.|++.++|++++||++|+|+++..
T Consensus 82 ~~~~~~~~-~~~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~ 128 (143)
T d2b5xa1 82 KETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQA 128 (143)
T ss_dssp HHHHHHTT-CCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEE
T ss_pred hhHHHhhc-cCccccccCccchHHHcCCCcCCEEEEECCCCEEEEEEE
Confidence 88999888 578988888899999999999999999999999999854
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.80 E-value=1.7e-19 Score=157.05 Aligned_cols=115 Identities=18% Similarity=0.254 Sum_probs=99.8
Q ss_pred ccCccCCce-ec--CCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-----CCHHH
Q 008336 15 LSSSARDFL-IR--SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-----EDDEA 85 (569)
Q Consensus 15 ~g~~~pdf~-~~--~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-----~~~~~ 85 (569)
+|.++|+|. .+ .+|+.++++.++|| ++|+|||+||++|+.++|.|+++++++++ ++.+++|+.+ .+.+.
T Consensus 3 ~g~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~--~~~~i~v~~~~~~~~~~~~~ 80 (143)
T d2b5xa1 3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD--QLNVVAVHMPRSEDDLDPGK 80 (143)
T ss_dssp TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEECCCSTTTSSHHH
T ss_pred CCCcCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc--cccceeEEeeccccccchhh
Confidence 699999994 33 48999999999999 99999999999999999999999999975 3788999875 35677
Q ss_pred HHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
++++++++++.+..+.|.+. .+.+.|++.++|++++||++|+|+..
T Consensus 81 ~~~~~~~~~~~~p~~~D~~~--~~~~~~~v~~~P~~~~id~~G~i~~~ 126 (143)
T d2b5xa1 81 IKETAAEHDITQPIFVDSDH--ALTDAFENEYVPAYYVFDKTGQLRHF 126 (143)
T ss_dssp HHHHHHHTTCCSCEEECSSC--HHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred hhhHHHhhccCccccccCcc--chHHHcCCCcCCEEEEECCCCEEEEE
Confidence 89999999987766666554 68999999999999999999999874
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.80 E-value=3.6e-19 Score=160.70 Aligned_cols=118 Identities=25% Similarity=0.490 Sum_probs=100.0
Q ss_pred ccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-CCHHHHHHHHH
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-EDDEAFKGYFS 91 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-~~~~~~~~~~~ 91 (569)
.+.++||| +.+.+|+.++|++++|| +||+||++||++|+.+++.++++++++...+ +.|++|+++ ++.+.+++|++
T Consensus 32 ~~~~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~-~~vv~vs~d~~~~~~~~~~~~ 110 (176)
T d1jfua_ 32 APLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN-FEVVAINIDTRDPEKPKTFLK 110 (176)
T ss_dssp SCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT-EEEEEEECCCSCTTHHHHHHH
T ss_pred CCCcCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccc-cccccccccccchhhhhhhHh
Confidence 35679999 66799999999999999 9999999999999999999999999998875 899999988 46778999999
Q ss_pred hCCCcccccC-Cchh--HHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 92 KMPWLAVPFS-DSET--RDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 92 ~~~~~~~~~~-~~~~--~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
++++.+.++. +... ...+...|++.++|+++|||++|+|+.+
T Consensus 111 ~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~ 155 (176)
T d1jfua_ 111 EANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 155 (176)
T ss_dssp HTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred hhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEE
Confidence 9987765443 3222 2345667889999999999999999874
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.77 E-value=3.4e-19 Score=155.29 Aligned_cols=112 Identities=16% Similarity=0.299 Sum_probs=91.9
Q ss_pred CccCCce-ecCC--------CceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 17 SSARDFL-IRSN--------GDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 17 ~~~pdf~-~~~~--------g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
.|||+|. ...+ +..+++++++|| +||+|||+||++|+.++|.+.++++.+ ++.+++|+.+......
T Consensus 1 ~paP~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~----~~~~~~i~~~~~~~~~ 76 (144)
T d1knga_ 1 RPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK----RFQLVGINYKDAADNA 76 (144)
T ss_dssp CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT----TSEEEEEEESCCHHHH
T ss_pred CCCCCCCCCCCCCccccCCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc----CceeEEEEeeechHHH
Confidence 3677773 3333 367899999999 999999999999999999999886553 4789999999999999
Q ss_pred HHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 87 KGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
.++..+++..+..+..+. ...+.+.|++.++|++++||++|+|+..
T Consensus 77 ~~~~~~~~~~~~~~~~d~-~~~~~~~~~v~~~P~~~liD~~G~i~~~ 122 (144)
T d1knga_ 77 RRFLGRYGNPFGRVGVDA-NGRASIEWGVYGVPETFVVGREGTIVYK 122 (144)
T ss_dssp HHHHHHHCCCCSEEEEET-TSHHHHHTTCCSSCEEEEECTTSBEEEE
T ss_pred HHHHHHcCCccccccccc-cchhhhhcCccccceEEEEcCCCeEEEE
Confidence 999998887666543222 2468999999999999999999999974
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.76 E-value=8.9e-19 Score=152.46 Aligned_cols=108 Identities=17% Similarity=0.301 Sum_probs=90.6
Q ss_pred eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-----CHHHHHHHHHhCCCc
Q 008336 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-----DDEAFKGYFSKMPWL 96 (569)
Q Consensus 23 ~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-----~~~~~~~~~~~~~~~ 96 (569)
+.+.+|+++++++++|| ++|+|||+|||+|++++|.+.+++++++..+ +.+++|+.+. ......++....++.
T Consensus 8 l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 86 (143)
T d2fy6a1 8 LKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSS-ANLITVASPGFLHEKKDGDFQKWYAGLNYP 86 (143)
T ss_dssp CEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTT-SEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred eECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCC-cEEEEEeeeecccccchhhhhhhhhhcCCc
Confidence 45679999999999999 9999999999999999999999999998775 8999998752 344567777777766
Q ss_pred cccc-CCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 97 AVPF-SDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 97 ~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
..++ .|.. ..+.+.|++.++|++++||++|+|+..
T Consensus 87 ~~~~~~D~~--~~~~~~~~v~~~P~~~liD~~G~i~~~ 122 (143)
T d2fy6a1 87 KLPVVTDNG--GTIAQSLNISVYPSWALIGKDGDVQRI 122 (143)
T ss_dssp TSCEEECTT--CHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred ccccccccc--hHHHHHcCCCccCEEEEECCCCEEEEE
Confidence 5554 3333 468999999999999999999999874
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=6.3e-19 Score=151.97 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=87.4
Q ss_pred cCCCceeecCCC-CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCC
Q 008336 25 RSNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (569)
Q Consensus 25 ~~~g~~v~l~~~-~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (569)
+.+|+.++++.+ +|| |+|+|||+||++|++++|.|.++++. ++.+++++.+.+......++.+.++.+.+...
T Consensus 6 d~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~-----~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (136)
T d1z5ye1 6 DNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLF 80 (136)
T ss_dssp SSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEE
T ss_pred cCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhhh-----hhhhcccccccchhhhHHHHHHcCCccceeec
Confidence 556999999998 899 99999999999999999999988653 38899999999999999999988776654432
Q ss_pred chhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 103 SETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+ ....+...|++.++|+++|||++|+|+..
T Consensus 81 d-~~~~~~~~~~v~~~P~~~liD~~G~i~~~ 110 (136)
T d1z5ye1 81 D-GDGMLGLDLGVYGAPETFLIDGNGIIRYR 110 (136)
T ss_dssp E-SSCHHHHHHTCCSBSEEEEECTTSCEEEE
T ss_pred c-cchhHHHhcccCCcceEEEEcCCCEEEEE
Confidence 2 22468899999999999999999999874
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.75 E-value=9.1e-19 Score=155.51 Aligned_cols=139 Identities=21% Similarity=0.305 Sum_probs=115.8
Q ss_pred cCCcccee-cCCCCceecccC--CCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDL--AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~--~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
...|+|.+ +.+|+.++|+++ +||++||.|| ++|||+|..+++.++++++++++. ++.|++|+.| +++..+++.
T Consensus 6 ~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d-~~~~~~~~~ 82 (160)
T d2cx4a1 6 EKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA--NAEVLAISVD-SPWCLKKFK 82 (160)
T ss_dssp SBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTT--CCEEEEEESS-CHHHHHHHH
T ss_pred CCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhccccccccc--cccccccccc-chhhhhhhc
Confidence 34689998 999999999997 7999999998 999999999999999999999866 6899999987 557778887
Q ss_pred hcCCCcccccCchhhHHHHHhcCCC----------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHh
Q 008336 412 KGMPWLALPFGDARKASLSRKFKVS----------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQY 481 (569)
Q Consensus 412 ~~~~~~~~~~~~d~~~~l~~~~~v~----------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l 481 (569)
...+ +.++++.|.+..+++.|++. ..|++||||++|+|++++... .|....+++++.+.+
T Consensus 83 ~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~---------~~~~~~~~~eil~~l 152 (160)
T d2cx4a1 83 DENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTD---------NPLNEPDYDEVVREA 152 (160)
T ss_dssp HHHT-CSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECS---------STTCCCCHHHHHHHH
T ss_pred ccce-eeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeC---------CCCCCCCHHHHHHHH
Confidence 7765 67788889899999999983 478999999999999985422 234556678888888
Q ss_pred hhhhcC
Q 008336 482 NEMAKG 487 (569)
Q Consensus 482 ~~l~~~ 487 (569)
++++.+
T Consensus 153 ~~l~~e 158 (160)
T d2cx4a1 153 NKIAGE 158 (160)
T ss_dssp HHHHTT
T ss_pred HHHccc
Confidence 877653
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=99.74 E-value=2.6e-18 Score=152.63 Aligned_cols=120 Identities=21% Similarity=0.257 Sum_probs=101.3
Q ss_pred hhccCCcccee-c----CCCCceecccCCCCEEEEEEecC-CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhH
Q 008336 333 VLVSGDLDFVV-G----KNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTS 406 (569)
Q Consensus 333 ~~~~~~~~f~~-~----~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~ 406 (569)
+.....|+|.+ + .++.+++|++++||++||+||.. |||+|..+++.|++++++|+++ +++|++||+|. ...
T Consensus 2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~--g~~vv~IS~D~-~~~ 78 (166)
T d1we0a1 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL--GVEVYSVSTDT-HFV 78 (166)
T ss_dssp CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT--TEEEEEEESSC-HHH
T ss_pred CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhccc--ceEEEeccccc-HHH
Confidence 34556799987 3 45568999999999999999955 9999999999999999999987 79999999984 466
Q ss_pred HHHHHhcCC---CcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccc
Q 008336 407 FDEFFKGMP---WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 407 ~~~~~~~~~---~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~ 455 (569)
.++|.+.+. -+.||++.|....+++.||+. ..|++||||++|+|++...
T Consensus 79 ~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~i 136 (166)
T d1we0a1 79 HKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEI 136 (166)
T ss_dssp HHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHHhhhhhhhcccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEEE
Confidence 677776652 378999999999999999984 5688999999999998753
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=7.2e-18 Score=148.36 Aligned_cols=117 Identities=19% Similarity=0.247 Sum_probs=98.8
Q ss_pred ccCccCCc-eecCCCceeecCCCCCc--EEEE-EecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSLKGK--IGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~~gk--vlv~-F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
+|+++|+| +.+.+|++++|++++|+ ++|. ||++|||+|..+++.+.++++++...+ ++|++|+.| +.+.+++|.
T Consensus 4 vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~-~~vi~vs~d-~~~~~~~~~ 81 (153)
T d1xvwa1 4 VGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD-SAALAISVG-PPPTHKIWA 81 (153)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS-EEEEEEESC-CHHHHHHHH
T ss_pred CcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccc-cccccccch-hhhHHHHHh
Confidence 69999999 55789999999999996 4444 469999999999999999999998775 999999987 678899999
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
+++++.+..+.+......+.+.|++. ..|++||||++|+|++.
T Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~ 130 (153)
T d1xvwa1 82 TQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFA 130 (153)
T ss_dssp HHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEE
T ss_pred hhhccceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEE
Confidence 99988777666655456788999974 34689999999999763
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=99.73 E-value=1.7e-17 Score=147.29 Aligned_cols=117 Identities=22% Similarity=0.270 Sum_probs=96.2
Q ss_pred ccccCccCCcee-c----CCCceeecCCCCCc-EEEEEecC-CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHH
Q 008336 13 SLLSSSARDFLI-R----SNGDQVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85 (569)
Q Consensus 13 ~~~g~~~pdf~~-~----~~g~~v~l~~~~gk-vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~ 85 (569)
++||.++|||.+ + .++.+++|++++|| ++|+||.. |||+|..+++.|++++++|.+.+ ++|++||.| +.+.
T Consensus 1 ~lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g-~~vv~IS~D-~~~~ 78 (166)
T d1we0a1 1 SLIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG-VEVYSVSTD-THFV 78 (166)
T ss_dssp CCTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT-EEEEEEESS-CHHH
T ss_pred CCCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccc-eEEEecccc-cHHH
Confidence 479999999944 3 24568999999999 99999965 99999999999999999999886 999999998 5666
Q ss_pred HHHHHHhC----CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 86 FKGYFSKM----PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
.++|.+++ +..+..+.|.+. .+++.||+. ..|++||||++|+|+..
T Consensus 79 ~~~~~~~~~~~~~~~fpll~D~~~--~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~ 134 (166)
T d1we0a1 79 HKAWHENSPAVGSIEYIMIGDPSQ--TISRQFDVLNEETGLADRGTFIIDPDGVIQAI 134 (166)
T ss_dssp HHHHHHSCHHHHTCCSEEEECTTC--HHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHhhhhhhhcccccccccCccc--HHHHHhCCCccccCcccceEEEECCCCcEEEE
Confidence 67776654 455555556554 799999984 56889999999999874
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.72 E-value=7.9e-18 Score=152.75 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=112.6
Q ss_pred ccCCccce----e-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHH
Q 008336 335 VSGDLDFV----V-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 408 (569)
Q Consensus 335 ~~~~~~f~----~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~ 408 (569)
..++|+|. + |.+|++++|++++||+|||+|| +.||+.|..+++.|.+++++++.. +++|++||.|.. ...+
T Consensus 6 ~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~--g~~VlgIS~Ds~-~s~~ 82 (194)
T d1uula_ 6 LHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI--GCEVLACSMDSE-YSHL 82 (194)
T ss_dssp TSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT--TEEEEEEESSCH-HHHH
T ss_pred CCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccC--ceEEEEEecCch-hhhh
Confidence 44679997 5 7889999999999999999999 999999999999999999999876 799999999954 4556
Q ss_pred HHHhcC------CCcccccCchhhHHHHHhcCC------CCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHH
Q 008336 409 EFFKGM------PWLALPFGDARKASLSRKFKV------SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 476 (569)
Q Consensus 409 ~~~~~~------~~~~~~~~~d~~~~l~~~~~v------~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~ 476 (569)
+|.+.+ .-+.||++.|.++++++.||| ..+|++||||++|+|++...... -.++++++
T Consensus 83 ~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~----------~~~r~~~E 152 (194)
T d1uula_ 83 AWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDL----------PVGRDVDE 152 (194)
T ss_dssp HHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECT----------TBCCCHHH
T ss_pred hhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEEEecC----------CCCcCHHH
Confidence 665544 247899999999999999999 35789999999999999853221 23346677
Q ss_pred HHHHhhhhh
Q 008336 477 IDGQYNEMA 485 (569)
Q Consensus 477 l~~~l~~l~ 485 (569)
+.+.|+.+-
T Consensus 153 ~Lr~l~alQ 161 (194)
T d1uula_ 153 ALRLVKAFQ 161 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777776653
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=99.72 E-value=5.7e-18 Score=151.16 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=99.1
Q ss_pred ccCCccce----e-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHH
Q 008336 335 VSGDLDFV----V-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 408 (569)
Q Consensus 335 ~~~~~~f~----~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~ 408 (569)
...+|+|. + |.+|++++|++++||+|||+|| +.||++|..+++.|++++++|+++ ++.|++||.|.. ....
T Consensus 6 G~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~--~~~v~~is~d~~-~~~~ 82 (167)
T d1e2ya_ 6 NHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEI--NTEVISCSCDSE-YSHL 82 (167)
T ss_dssp TSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTT--TEEEEEEESSCH-HHHH
T ss_pred CCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcC--ceEEEeecCCcH-HhHH
Confidence 45679996 5 8899999999999999999999 999999999999999999999976 799999999854 4555
Q ss_pred HHHhcCC------CcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEcc
Q 008336 409 EFFKGMP------WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 409 ~~~~~~~------~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~ 454 (569)
++..... -+.++++.|....+++.|++. .+|++||||++|+|++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~ 140 (167)
T d1e2ya_ 83 QWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQII 140 (167)
T ss_dssp HHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEE
Confidence 5554332 256788889999999999983 468999999999998875
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.72 E-value=1.3e-17 Score=149.15 Aligned_cols=124 Identities=13% Similarity=0.160 Sum_probs=101.3
Q ss_pred CceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC---CcccccCc
Q 008336 348 GKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP---WLALPFGD 423 (569)
Q Consensus 348 ~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~---~~~~~~~~ 423 (569)
+.+++++++||++||+|| +.|||+|..+++.|.+++++++++ ++++++|+.|.. ....++.+.+. .+.||++.
T Consensus 35 ~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~--g~~vv~is~d~~-~~~~~~~~~~~~~~~~~f~ll~ 111 (169)
T d2bmxa1 35 TTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR--DAQILGVSIDSE-FAHFQWRAQHNDLKTLPFPMLS 111 (169)
T ss_dssp EEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT--TEEEEEEESSCH-HHHHHHHHHCTTGGGCCSCEEE
T ss_pred cEeeHHHHCCCeEEEEEecCCCCcccccccccccccccccccc--Ccceeeccccch-hhhhhhcccccccccceEEEEe
Confidence 688999999999999999 999999999999999999999976 799999999964 44555555443 47899999
Q ss_pred hhhHHHHHhcCC-----CCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhh
Q 008336 424 ARKASLSRKFKV-----SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEM 484 (569)
Q Consensus 424 d~~~~l~~~~~v-----~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l 484 (569)
|.+.++++.||| ...|++||||++|+|++..... . -.++.++++.+.|+.|
T Consensus 112 D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~~~~~---------~-~~~~~~~evl~~l~al 167 (169)
T d2bmxa1 112 DIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATA---------G-SVGRNVDEVLRVLDAL 167 (169)
T ss_dssp CTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEEC---------T-TCCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHcCCCccCCccceeEEEEcCCCEEEEEEEcC---------C-CCCCCHHHHHHHHHHh
Confidence 999999999998 6789999999999999875321 0 1234566777777654
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.70 E-value=2.8e-17 Score=144.75 Aligned_cols=135 Identities=17% Similarity=0.214 Sum_probs=109.8
Q ss_pred CCcccee----cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 337 GDLDFVV----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 337 ~~~~f~~----~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
.+|+|.+ +.+|+.++|++++||+|||+|| +.|||.|..+++.++++++++... +..|++||.|.. ...++|.
T Consensus 2 ~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~--~~~vigIS~d~~-~~~~~~~ 78 (158)
T d1zyea1 2 HAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV--NCEVVAVSVDSH-FSHLAWI 78 (158)
T ss_dssp BCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT--TEEEEEEESSCH-HHHHHHH
T ss_pred CCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcC--CceEEeccCcCH-HHHHHHH
Confidence 3689964 5677899999999999999999 899999999999999999999876 799999999954 5667777
Q ss_pred hcC------CCcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHH
Q 008336 412 KGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 479 (569)
Q Consensus 412 ~~~------~~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~ 479 (569)
+.. ..+.||++.|....+++.|++. +.|++||||++|+|++...... -.+++++++++
T Consensus 79 ~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~----------~~~~~~~EiL~ 148 (158)
T d1zyea1 79 NTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDL----------PVGRSVEETLR 148 (158)
T ss_dssp TSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECT----------TCCCCHHHHHH
T ss_pred hhhHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEEEeCC----------CCCCCHHHHHH
Confidence 654 3578999999999999999986 4678999999999998743211 12345666767
Q ss_pred Hhhhh
Q 008336 480 QYNEM 484 (569)
Q Consensus 480 ~l~~l 484 (569)
.|+.+
T Consensus 149 ~lkal 153 (158)
T d1zyea1 149 LVKAF 153 (158)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66644
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=99.70 E-value=3.6e-17 Score=145.85 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=93.2
Q ss_pred cccCccCCce-----ecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 14 LLSSSARDFL-----IRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 14 ~~g~~~pdf~-----~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
.||++||||. .+.+|++++|++++|| ++|+|| ++||++|..+++.|++.+++|.+.+ +.|++|+.| +....
T Consensus 4 kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~-~~v~~is~d-~~~~~ 81 (167)
T d1e2ya_ 4 KLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEIN-TEVISCSCD-SEYSH 81 (167)
T ss_dssp CTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTT-EEEEEEESS-CHHHH
T ss_pred cCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCc-eEEEeecCC-cHHhH
Confidence 5899999994 2468999999999999 999998 9999999999999999999999886 999999998 45556
Q ss_pred HHHHHhCC-------CcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 87 KGYFSKMP-------WLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
.++..+.. ..+..+.+. ...+.+.|++. ..|++||||++|+|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~d~--~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~ 139 (167)
T d1e2ya_ 82 LQWTSVDRKKGGLGPMAIPMLADK--TKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQI 139 (167)
T ss_dssp HHHHHSCGGGTCCCCCSSCEEECT--TCHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHhhHHHhcccccccccccccc--hhHHHHHcCCCcccCCCceeEEEEECCCCEEEEE
Confidence 66665432 222223333 34688899882 46899999999999864
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.70 E-value=2.4e-17 Score=146.14 Aligned_cols=115 Identities=22% Similarity=0.294 Sum_probs=99.8
Q ss_pred ccCccCCc-eecCCCceeecCCC--CCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSL--KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~--~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
+|++||+| +.+.+|+.++|+++ +|| ++|.|| ++|||+|..+++.++++++++.+.+ +.+++|+.+ +++..+++
T Consensus 4 vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-~~vv~is~d-~~~~~~~~ 81 (160)
T d2cx4a1 4 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN-AEVLAISVD-SPWCLKKF 81 (160)
T ss_dssp TTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTC-CEEEEEESS-CHHHHHHH
T ss_pred CCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccc-ccccccccc-chhhhhhh
Confidence 79999999 56789999999997 799 888888 9999999999999999999998886 899999987 67788899
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCCC----------CccEEEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKVM----------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~----------~~P~~~lid~~G~i~~~ 133 (569)
..+.+..+..+.|.+. .+.+.||+. ..|++||||++|+|++.
T Consensus 82 ~~~~~~~~~~l~D~~~--~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~ 133 (160)
T d2cx4a1 82 KDENRLAFNLLSDYNR--EVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYK 133 (160)
T ss_dssp HHHHTCSSEEEECTTS--HHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEE
T ss_pred cccceeeEEEeecCCc--chHHHcCccccccccccccceeeEEEEcCCCEEEEE
Confidence 8888877766666554 688999873 47899999999999874
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=1.2e-16 Score=142.76 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=94.4
Q ss_pred ccCccCCcee-cCCC---------------ceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEE
Q 008336 15 LSSSARDFLI-RSNG---------------DQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76 (569)
Q Consensus 15 ~g~~~pdf~~-~~~g---------------~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~ 76 (569)
+|++||+|.+ +..| +.+++++++|| ++|+|| ++|||+|..+++.|.+.+++|++.| +++++
T Consensus 5 vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g-~~vv~ 83 (169)
T d2bmxa1 5 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD-AQILG 83 (169)
T ss_dssp TTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT-EEEEE
T ss_pred CCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccC-cceee
Confidence 7999999944 4444 68999999999 999998 9999999999999999999999886 99999
Q ss_pred EeCCCCHHHHHHHHHhCC----CcccccCCchhHHHHHHhcCC-----CCccEEEEECCCCcEEEc
Q 008336 77 VSGDEDDEAFKGYFSKMP----WLAVPFSDSETRDKLDELFKV-----MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 77 v~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~G~i~~~ 133 (569)
|+.|. .....++.+.+. ..+..+.|.+ ..+++.||+ ...|++||||++|+|++.
T Consensus 84 is~d~-~~~~~~~~~~~~~~~~~~f~ll~D~~--~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~ 146 (169)
T d2bmxa1 84 VSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIK--RELSQAAGVLNADGVADRVTFIVDPNNEIQFV 146 (169)
T ss_dssp EESSC-HHHHHHHHHHCTTGGGCCSCEEECTT--SHHHHHHTCBCTTSSBCEEEEEECTTSBEEEE
T ss_pred ccccc-hhhhhhhcccccccccceEEEEeccH--HHHHHHcCCCccCCccceeEEEEcCCCEEEEE
Confidence 99994 555666666554 3344445543 479999998 678999999999999863
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=5.1e-17 Score=142.82 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=94.4
Q ss_pred cCCcccee-cCCCCceecccCCCC-EEEEE-EecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHh
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGK-TILLY-FSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 412 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk-~vll~-F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 412 (569)
...|+|.+ +.+|++++|++++|| +++|. |+++|||+|..+++.|.++++++..+ +++|++|+.| ++...++|.+
T Consensus 6 ~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~--~~~vi~vs~d-~~~~~~~~~~ 82 (153)
T d1xvwa1 6 ATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND--DSAALAISVG-PPPTHKIWAT 82 (153)
T ss_dssp SBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS--SEEEEEEESC-CHHHHHHHHH
T ss_pred CCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhccc--ccccccccch-hhhHHHHHhh
Confidence 45699998 999999999999995 55555 45999999999999999999998765 7999999987 4578888988
Q ss_pred cCCCcccccCc--hhhHHHHHhcCCC------CccEEEEECCCCcEEEcc
Q 008336 413 GMPWLALPFGD--ARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 413 ~~~~~~~~~~~--d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~ 454 (569)
.++ +.+|++. +....+++.|++. ..|++||||++|+|++.+
T Consensus 83 ~~~-~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~ 131 (153)
T d1xvwa1 83 QSG-FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAE 131 (153)
T ss_dssp HHT-CCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEE
T ss_pred hhc-cceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEE
Confidence 776 4555543 3467899999974 346899999999999875
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=99.67 E-value=1.7e-16 Score=141.45 Aligned_cols=116 Identities=20% Similarity=0.266 Sum_probs=92.8
Q ss_pred cccCccCCcee-cCCC-----ceeecCCCCCc--EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHH
Q 008336 14 LLSSSARDFLI-RSNG-----DQVKLDSLKGK--IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84 (569)
Q Consensus 14 ~~g~~~pdf~~-~~~g-----~~v~l~~~~gk--vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~ 84 (569)
+||++||||.+ +.+| +.++|++++|| ++|+|| +.|||.|..+++.|++.++++.+.+ ++|++|+.| +..
T Consensus 2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g-~~Vvgis~d-~~~ 79 (170)
T d1zofa1 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG-FNVIGVSID-SEQ 79 (170)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT-EEEEEEESS-CHH
T ss_pred CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCC-eeEeccccc-chh
Confidence 68999999944 4555 57999999997 888899 9999999999999999999999886 999999998 455
Q ss_pred HHHHHHHhC-------CCcccccCCchhHHHHHHhcCCC-----CccEEEEECCCCcEEEc
Q 008336 85 AFKGYFSKM-------PWLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (569)
Q Consensus 85 ~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~ 133 (569)
..++|.++. +..+..+.|.. ..+.+.||+. ..|++||||++|+|++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~D~~--~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~ 138 (170)
T d1zofa1 80 VHFAWKNTPVEKGGIGQVSFPMVADIT--KSISRDYDVLFEEAIALRGAFLIDKNMKVRHA 138 (170)
T ss_dssp HHHHHHTSCGGGTCCCCCSSCEEECTT--SHHHHHTTCEETTTEECEEEEEEETTTEEEEE
T ss_pred hHHHHHhhhhhcccccCcccccccccc--cHHHHHcCCCccccceeEEEEEEcCCCeEEEE
Confidence 556666554 22333334443 4799999984 57899999999999863
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=99.67 E-value=9.4e-17 Score=143.09 Aligned_cols=138 Identities=16% Similarity=0.184 Sum_probs=109.9
Q ss_pred ccCCcccee-cCCC-----CceecccCCCC-EEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhH
Q 008336 335 VSGDLDFVV-GKNG-----GKVPVSDLAGK-TILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTS 406 (569)
Q Consensus 335 ~~~~~~f~~-~~~g-----~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~ 406 (569)
...+|||.+ +.+| +.++|+++.|| +|||+|| +.|||.|.++++.+++.++++++. +++|++||.|.. ..
T Consensus 4 G~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~--g~~Vvgis~d~~-~~ 80 (170)
T d1zofa1 4 TKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK--GFNVIGVSIDSE-QV 80 (170)
T ss_dssp TSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT--TEEEEEEESSCH-HH
T ss_pred CCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccC--CeeEecccccch-hh
Confidence 345799988 6666 47999999996 8999999 999999999999999999999877 799999999854 44
Q ss_pred HHHHHhcC------CCcccccCchhhHHHHHhcCCC-----CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHH
Q 008336 407 FDEFFKGM------PWLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 475 (569)
Q Consensus 407 ~~~~~~~~------~~~~~~~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~ 475 (569)
..+|.+.. ..+.+|++.|....+++.||+. ..|++||||++|+|++...... -..++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~----------~~~~~~~ 150 (170)
T d1zofa1 81 HFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDL----------PLGRNAD 150 (170)
T ss_dssp HHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEESS----------SCCCHHH
T ss_pred HHHHHhhhhhcccccCcccccccccccHHHHHcCCCccccceeEEEEEEcCCCeEEEEEEeCC----------CCCCCHH
Confidence 55555543 2477888999999999999984 5789999999999998743211 1244677
Q ss_pred HHHHHhhhhh
Q 008336 476 EIDGQYNEMA 485 (569)
Q Consensus 476 ~l~~~l~~l~ 485 (569)
++++.|+.|.
T Consensus 151 eiL~~l~aLq 160 (170)
T d1zofa1 151 EMLRMVDALL 160 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7777776653
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=4.4e-17 Score=144.59 Aligned_cols=116 Identities=20% Similarity=0.211 Sum_probs=95.3
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|++||+| +.+.+|+.++|++++|| ++|.|| +.|||+|..++|.|++++.++. ++.+++|+.| ++...+++.
T Consensus 19 ~vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d-~~~~~~~~~ 94 (164)
T d1qxha_ 19 QAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID---NTVVLCISAD-LPFAQSRFC 94 (164)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST---TEEEEEEESS-CHHHHTTCC
T ss_pred CCCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc---cceeeeEEcC-CHHHHHHHH
Confidence 479999999 56789999999999999 888887 7799999999999999987753 4999999998 567777887
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCC---------CccEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVM---------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~ 133 (569)
.+++..+....+.+....+.+.||+. ..|++||||++|+|++.
T Consensus 95 ~~~~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~ 146 (164)
T d1qxha_ 95 GAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFS 146 (164)
T ss_dssp SSTTCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred HHhCCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEE
Confidence 77776655554444445788999873 24789999999999874
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.65 E-value=4.6e-16 Score=140.95 Aligned_cols=116 Identities=22% Similarity=0.198 Sum_probs=95.0
Q ss_pred cccCccCCcee-----cCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 14 LLSSSARDFLI-----RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 14 ~~g~~~pdf~~-----~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
..|.|||||.. +.+|+.++|++++|| ++|+|| +.||+.|..+++.|+++++++.+.+ ++|++||.| +....
T Consensus 4 e~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g-~~VlgIS~D-s~~s~ 81 (194)
T d1uula_ 4 EDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG-CEVLACSMD-SEYSH 81 (194)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT-EEEEEEESS-CHHHH
T ss_pred ccCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCc-eEEEEEecC-chhhh
Confidence 46889999952 457889999999999 999999 9999999999999999999999885 999999999 45566
Q ss_pred HHHHHhCC-------CcccccCCchhHHHHHHhcCC------CCccEEEEECCCCcEEEc
Q 008336 87 KGYFSKMP-------WLAVPFSDSETRDKLDELFKV------MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~v------~~~P~~~lid~~G~i~~~ 133 (569)
++|.+.+. ..+..+.|.+ ..+++.||+ ...|++||||++|+|++.
T Consensus 82 ~~~~~~~~~~~~~~~l~fpllsD~~--~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~ 139 (194)
T d1uula_ 82 LAWTSIERKRGGLGQMNIPILADKT--KCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQI 139 (194)
T ss_dssp HHHHHSCGGGTCCCSCSSCEEECTT--CHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred hhhhhhhhhhccccCCCcceeeCCc--chHHHHcCCeeccCCceEEEEEEECCCCeEEEE
Confidence 77766542 2333344444 479999998 347899999999999874
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.64 E-value=2.3e-16 Score=141.67 Aligned_cols=140 Identities=15% Similarity=0.196 Sum_probs=111.0
Q ss_pred hhccCCcccee-c-CCC--CceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHH
Q 008336 333 VLVSGDLDFVV-G-KNG--GKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSF 407 (569)
Q Consensus 333 ~~~~~~~~f~~-~-~~g--~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~ 407 (569)
++....|+|.+ . .+| .++++++++||++||+|| +.||+.|..+++.|++.+++|++. +++|++||+|. ....
T Consensus 2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~--~~~v~gIS~Ds-~~sh 78 (186)
T d1n8ja_ 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL--GVDVYSVSTDT-HFTH 78 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT--TEEEEEEESSC-HHHH
T ss_pred CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccc--cEEEEeccccC-HHHH
Confidence 34556799975 2 344 578999999999999999 889999999999999999999876 79999999985 4566
Q ss_pred HHHHhcCC---CcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHH
Q 008336 408 DEFFKGMP---WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEID 478 (569)
Q Consensus 408 ~~~~~~~~---~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~ 478 (569)
++|.+.+. .+.||++.|.++.+++.||+. ..|++||||++|+|++...... -..+++++++
T Consensus 79 ~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~----------~~~r~~~eiL 148 (186)
T d1n8ja_ 79 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAE----------GIGRDASDLL 148 (186)
T ss_dssp HHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECT----------TBCCCHHHHH
T ss_pred HHHhccccccccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEeecCC----------CcccCHHHHH
Confidence 66766553 578999999999999999984 4688999999999988743211 1345666777
Q ss_pred HHhhhhh
Q 008336 479 GQYNEMA 485 (569)
Q Consensus 479 ~~l~~l~ 485 (569)
+.|+.+.
T Consensus 149 ~~lkaLQ 155 (186)
T d1n8ja_ 149 RKIKAAQ 155 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=1.5e-16 Score=139.90 Aligned_cols=115 Identities=16% Similarity=0.190 Sum_probs=97.6
Q ss_pred cCCcccee-cCCCCceecccC--CCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDL--AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~--~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
...|+|.+ +.+|+.++|+++ +|++|+++|| +.|||+|..+++.|.+.+++|++. ..+++||.| +.+..++|.
T Consensus 9 ~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~---~~~~~is~d-~~~~~~~f~ 84 (156)
T d2a4va1 9 DPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---AAVFGLSAD-SVTSQKKFQ 84 (156)
T ss_dssp CBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---CEEEEEESC-CHHHHHHHH
T ss_pred CCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc---cceeeeccc-hhhhHHhhh
Confidence 45699998 999999999998 4668888888 899999999999999999999754 678999988 667889999
Q ss_pred hcCCCcccccCchhhHHHHHhcCCCCccE-----EEEECCCCcEEEccc
Q 008336 412 KGMPWLALPFGDARKASLSRKFKVSGIPM-----LVAIGPSGRTITKEA 455 (569)
Q Consensus 412 ~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt-----~~lid~~G~i~~~~~ 455 (569)
++++ +.||++.|.+.++++.||+...|. .++|+.+|+++.++.
T Consensus 85 ~~~~-l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~~ 132 (156)
T d2a4va1 85 SKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRV 132 (156)
T ss_dssp HHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEEE
T ss_pred cccC-ccceeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEEE
Confidence 9888 789999999999999999876552 444447999998853
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=3.6e-16 Score=140.07 Aligned_cols=137 Identities=19% Similarity=0.311 Sum_probs=100.0
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCCh-hHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC---CChhHHHHHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERNESLEVVFISSD---RDQTSFDEFF 411 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d---~~~~~~~~~~ 411 (569)
+.|+|.+ +.+|+.+++++++||++||+||++||+ +|..+++.|.++++.+.+.+.++.+++||+| ++++.+++|.
T Consensus 10 ~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~~y~ 89 (172)
T d1xzoa1 10 EVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFA 89 (172)
T ss_dssp ECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHH
T ss_pred cCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHHHHHH
Confidence 4589988 999999999999999999999999997 6999999999999999866567999999998 3577889999
Q ss_pred hcCCC--cccccCchhh-----HHHHHhcCCC-----------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHH
Q 008336 412 KGMPW--LALPFGDARK-----ASLSRKFKVS-----------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEER 473 (569)
Q Consensus 412 ~~~~~--~~~~~~~d~~-----~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~ 473 (569)
+.++. ..+.++.+.. ....+.|++. ..|.+||||++|+|+.... | .....
T Consensus 90 ~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~-------g-----~~~~~ 157 (172)
T d1xzoa1 90 ANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYN-------G-----VENTP 157 (172)
T ss_dssp TTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEE-------S-----SSSCC
T ss_pred HHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEc-------C-----CCCCC
Confidence 87752 2222332211 1122334331 3478999999999987631 2 11123
Q ss_pred HHHHHHHhhhhh
Q 008336 474 MKEIDGQYNEMA 485 (569)
Q Consensus 474 ~~~l~~~l~~l~ 485 (569)
.++|.+.|+++.
T Consensus 158 ~~~l~~dik~~~ 169 (172)
T d1xzoa1 158 YDDIISDVKSAS 169 (172)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 456667776653
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=99.61 E-value=1.2e-15 Score=141.62 Aligned_cols=138 Identities=14% Similarity=0.209 Sum_probs=108.3
Q ss_pred ccCCcccee-cCCCCceecccC---CCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--hhHH
Q 008336 335 VSGDLDFVV-GKNGGKVPVSDL---AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QTSF 407 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~v~l~~~---~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~--~~~~ 407 (569)
....|+|.+ +.+| ++.+.++ +||.+||+|| +.|||.|..+++.|.+++++|+++ +++|++||+|.. ...|
T Consensus 4 Gd~aPdF~l~t~~G-~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~--g~~vigiS~Ds~~sh~~w 80 (237)
T d2zcta1 4 GERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL--GVDLIGLSVDSVFSHIKW 80 (237)
T ss_dssp TSBCCCEEEEETTE-EEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHT--TEEEEEEESSCHHHHHHH
T ss_pred CCCCCCeEEEcCCC-CEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccC--CcceeeccCCcHHHHHHH
Confidence 345799998 7777 4666654 7999999999 999999999999999999999987 799999999963 2344
Q ss_pred HHHHhc--CCCcccccCchhhHHHHHhcCC-------CCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHH
Q 008336 408 DEFFKG--MPWLALPFGDARKASLSRKFKV-------SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEID 478 (569)
Q Consensus 408 ~~~~~~--~~~~~~~~~~d~~~~l~~~~~v-------~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~ 478 (569)
.+.++. ...+.||++.|.+..+++.||+ ...|++||||++|+|+...... ...++++++++
T Consensus 81 ~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~----------~~~gR~~dEiL 150 (237)
T d2zcta1 81 KEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYP----------MELGRLVDEIL 150 (237)
T ss_dssp HHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEEECC----------TTBCCCHHHHH
T ss_pred hhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEEEeC----------CCCCCCHHHHH
Confidence 444432 2458899999999999999998 4689999999999998874221 02344667777
Q ss_pred HHhhhhh
Q 008336 479 GQYNEMA 485 (569)
Q Consensus 479 ~~l~~l~ 485 (569)
+.|+.|-
T Consensus 151 r~l~aLQ 157 (237)
T d2zcta1 151 RIVKALK 157 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777654
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.61 E-value=2.8e-15 Score=131.77 Aligned_cols=113 Identities=21% Similarity=0.266 Sum_probs=93.7
Q ss_pred CccCCcee----cCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 17 SSARDFLI----RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 17 ~~~pdf~~----~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
+.||+|.+ +.+|+.++|++++|| ++|+|| +.|||+|..+++.+++.++++.+.+ .+|++||.| +....++|.
T Consensus 1 ~~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~-~~vigIS~d-~~~~~~~~~ 78 (158)
T d1zyea1 1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN-CEVVAVSVD-SHFSHLAWI 78 (158)
T ss_dssp SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT-EEEEEEESS-CHHHHHHHH
T ss_pred CCCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCC-ceEEeccCc-CHHHHHHHH
Confidence 46999953 236679999999999 999999 9999999999999999999999886 999999999 556778887
Q ss_pred HhC-------CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 91 SKM-------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~-------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
... +..+..+.|... .+.+.||+. +.|++||||++|+|++.
T Consensus 79 ~~~~~~~~~~~~~f~llsD~~~--~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~ 132 (158)
T d1zyea1 79 NTPRKNGGLGHMNIALLSDLTK--QISRDYGVLLEGPGLALRGLFIIDPNGVIKHL 132 (158)
T ss_dssp TSCGGGTCCCSCSSEEEECTTS--HHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred hhhHhhcccccccccccccccc--HHHHHHHhccccCCccccEEEEECCCCEEEEE
Confidence 764 445555566554 688999985 46789999999999873
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.5e-15 Score=137.83 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=113.2
Q ss_pred hccCCcccee----cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHH
Q 008336 334 LVSGDLDFVV----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 408 (569)
Q Consensus 334 ~~~~~~~f~~----~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~ 408 (569)
.....|+|.+ +.+|+.++|++++||++||+|| +.||+.|..++..|++++++|++. ++.|++||.|.. ...+
T Consensus 7 VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~--g~~vigIS~D~~-~~~~ 83 (197)
T d1qmva_ 7 IGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKL--GCEVLGVSVDSQ-FTHL 83 (197)
T ss_dssp TTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT--TEEEEEEESSCH-HHHH
T ss_pred CCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccC--CcEEEEEecCCH-HHHH
Confidence 3456799954 6788899999999999999999 999999999999999999999976 799999999954 4566
Q ss_pred HHHhcC------CCcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHH
Q 008336 409 EFFKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 476 (569)
Q Consensus 409 ~~~~~~------~~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~ 476 (569)
+|.+.+ .-+.||++.|..+++++.||+. .+|++||||++|+|++..... .-.++++++
T Consensus 84 ~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~----------~~~~r~~~E 153 (197)
T d1qmva_ 84 AWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVND----------LPVGRSVDE 153 (197)
T ss_dssp HHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC----------TTBCCCHHH
T ss_pred hhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEEecC----------CCcccCHHH
Confidence 776654 2478999999999999999985 468999999999999874322 123456677
Q ss_pred HHHHhhhhh
Q 008336 477 IDGQYNEMA 485 (569)
Q Consensus 477 l~~~l~~l~ 485 (569)
+.+.|+.+.
T Consensus 154 ~lr~l~alq 162 (197)
T d1qmva_ 154 ALRLVQAFQ 162 (197)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 777776653
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=6.6e-16 Score=136.88 Aligned_cols=115 Identities=21% Similarity=0.210 Sum_probs=93.8
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+|.+ +.+|++++|++++||++||+|| +.|||+|.++++.|++++.++. ++.+++||.| ++...+++.+.
T Consensus 22 ~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~----~~~vv~Is~d-~~~~~~~~~~~ 96 (164)
T d1qxha_ 22 SKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID----NTVVLCISAD-LPFAQSRFCGA 96 (164)
T ss_dssp SBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST----TEEEEEEESS-CHHHHTTCCSS
T ss_pred CCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc----cceeeeEEcC-CHHHHHHHHHH
Confidence 34699998 9999999999999999999998 7799999999999998877653 5899999998 45666667666
Q ss_pred CCCccccc--CchhhHHHHHhcCCC---------CccEEEEECCCCcEEEccch
Q 008336 414 MPWLALPF--GDARKASLSRKFKVS---------GIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 414 ~~~~~~~~--~~d~~~~l~~~~~v~---------~~Pt~~lid~~G~i~~~~~~ 456 (569)
++ +.+++ ..+++.++++.||+. ..|++||||++|+|++++..
T Consensus 97 ~~-~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~~ 149 (164)
T d1qxha_ 97 EG-LNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLV 149 (164)
T ss_dssp TT-CTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred hC-CCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEEc
Confidence 65 44443 356788899999974 24789999999999998543
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.59 E-value=3.5e-15 Score=133.82 Aligned_cols=117 Identities=22% Similarity=0.265 Sum_probs=96.4
Q ss_pred ccccCccCCceec--CCC--ceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 13 SLLSSSARDFLIR--SNG--DQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 13 ~~~g~~~pdf~~~--~~g--~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
++||+++|+|... .+| .+++|++++|| ++|+|| +.|||.|..+++.|++.+++|.+.+ ++|++||.| +.+..
T Consensus 1 ~lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~-~~v~gIS~D-s~~sh 78 (186)
T d1n8ja_ 1 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG-VDVYSVSTD-THFTH 78 (186)
T ss_dssp CCTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT-EEEEEEESS-CHHHH
T ss_pred CCCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccccc-EEEEecccc-CHHHH
Confidence 5799999999543 355 47899999999 999999 8999999999999999999999885 999999998 67778
Q ss_pred HHHHHhCC----CcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 87 KGYFSKMP----WLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~~----~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
++|.++.. ..+..+.|.+ ..+++.||+. ..|++||||++|+|+..
T Consensus 79 ~~f~~~~~~~~~~~fpllsD~~--~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~ 133 (186)
T d1n8ja_ 79 KAWHSSSETIAKIKYAMIGDPT--GALTRNFDNMREDEGLADRATFVVDPQGIIQAI 133 (186)
T ss_dssp HHHHHHCTTGGGCCSEEEECTT--SHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHhccccccccccccccccHH--HHHHHHhCCCcccCCcceeeEEEECchheEEEE
Confidence 88887764 3333344444 4799999984 46889999999999874
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.59 E-value=4e-15 Score=132.25 Aligned_cols=135 Identities=21% Similarity=0.254 Sum_probs=108.8
Q ss_pred Ccccee-----cCCCCceecccCCC-CEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHH
Q 008336 338 DLDFVV-----GKNGGKVPVSDLAG-KTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 410 (569)
Q Consensus 338 ~~~f~~-----~~~g~~v~l~~~~g-k~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~ 410 (569)
+|+|.+ +.++++++|++++| |+|||+|| +.|||.|.+++..+++.+++|++. ++.||+||.|.. ...++|
T Consensus 2 APdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~--g~~vigIS~D~~-~~~~~~ 78 (170)
T d2h01a1 2 APSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER--NVELLGCSVDSK-FTHLAW 78 (170)
T ss_dssp CCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT--TEEEEEEESSCH-HHHHHH
T ss_pred CCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcC--CeeEecccCCcH-HHHHhH
Confidence 588876 45667899999998 79999999 899999999999999999999987 799999999954 555666
Q ss_pred HhcC------CCcccccCchhhHHHHHhcCCC-----CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHH
Q 008336 411 FKGM------PWLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 479 (569)
Q Consensus 411 ~~~~------~~~~~~~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~ 479 (569)
.+.+ ..+.+|++.|....+++.||+. ..+++||||++|+|++...... -..++.+++++
T Consensus 79 ~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~----------~~~~~~~eil~ 148 (170)
T d2h01a1 79 KKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNL----------ALGRSVDEILR 148 (170)
T ss_dssp HTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGG----------SSGGGHHHHHH
T ss_pred hhhhhhhccccccCCceeEcCccHHHHHhCCccccccceeeeEEEcCCCeEEEEEEecC----------CCCCCHHHHHH
Confidence 6543 2367889999999999999983 4589999999999998753221 13446777888
Q ss_pred Hhhhhh
Q 008336 480 QYNEMA 485 (569)
Q Consensus 480 ~l~~l~ 485 (569)
.|+++-
T Consensus 149 ~l~~lq 154 (170)
T d2h01a1 149 LIDALQ 154 (170)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 877663
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.58 E-value=8e-15 Score=131.11 Aligned_cols=122 Identities=22% Similarity=0.351 Sum_probs=94.9
Q ss_pred ccccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCH-hhHhhHHHHHHHHHHhcCCC-CEEEEEEeCC---CCH
Q 008336 11 IQSLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG-DFEVIFVSGD---EDD 83 (569)
Q Consensus 11 ~~~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~-~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d---~~~ 83 (569)
+..-++.++|+| +.+.+|+.+++++++|| +||+||++||+ .|...++.|.++++++.+.+ ++.+++|++| +++
T Consensus 3 ~~~p~~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp 82 (172)
T d1xzoa1 3 IKDPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKP 82 (172)
T ss_dssp CCSCCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCH
T ss_pred ccCCCCCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchH
Confidence 445578899999 66789999999999999 99999999997 79999999999999997655 7999999997 467
Q ss_pred HHHHHHHHhCCCcccc---cCCc--hhH-HHHHHhcCC-----------CCccEEEEECCCCcEEE
Q 008336 84 EAFKGYFSKMPWLAVP---FSDS--ETR-DKLDELFKV-----------MGIPHLVILDENGKVLS 132 (569)
Q Consensus 84 ~~~~~~~~~~~~~~~~---~~~~--~~~-~~l~~~~~v-----------~~~P~~~lid~~G~i~~ 132 (569)
+.+++|.+.++..+.. +.+. ... ....+.|++ ...|.++|||++|+|+.
T Consensus 83 ~~l~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~ 148 (172)
T d1xzoa1 83 KQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLK 148 (172)
T ss_dssp HHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEE
T ss_pred HHHHHHHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEE
Confidence 8899999988764432 2221 111 122344443 23478999999999985
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=99.58 E-value=1e-14 Score=135.27 Aligned_cols=116 Identities=18% Similarity=0.297 Sum_probs=90.1
Q ss_pred cccCccCCcee-cCCCceeecCCC---CCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC--HHH
Q 008336 14 LLSSSARDFLI-RSNGDQVKLDSL---KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DEA 85 (569)
Q Consensus 14 ~~g~~~pdf~~-~~~g~~v~l~~~---~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~--~~~ 85 (569)
+||++||||.+ +.+| .++++++ +|| ++|+|| +.|||.|..+++.|++++++|++.| ++|++||+|.. ...
T Consensus 2 lIGd~aPdF~l~t~~G-~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g-~~vigiS~Ds~~sh~~ 79 (237)
T d2zcta1 2 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG-VDLIGLSVDSVFSHIK 79 (237)
T ss_dssp CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTT-EEEEEEESSCHHHHHH
T ss_pred CCCCCCCCeEEEcCCC-CEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCC-cceeeccCCcHHHHHH
Confidence 58999999954 5677 4777764 899 888887 9999999999999999999999886 99999999952 233
Q ss_pred HHHHHHh---CCCcccccCCchhHHHHHHhcCC-------CCccEEEEECCCCcEEEc
Q 008336 86 FKGYFSK---MPWLAVPFSDSETRDKLDELFKV-------MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v-------~~~P~~~lid~~G~i~~~ 133 (569)
|.+.++. .+..+..+.|.+ ..+++.||+ ...|++||||++|+|+..
T Consensus 80 w~~~~~~~~~~~l~fpllsD~~--~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~ 135 (237)
T d2zcta1 80 WKEWIERHIGVRIPFPIIADPQ--GTVARRLGLLHAESATHTVRGVFIVDARGVIRTM 135 (237)
T ss_dssp HHHHHHHHHCCCCCSCEEECGG--GHHHHHTTCC----CCTTCCEEEEECTTSBEEEE
T ss_pred HhhhhhhhcccccccccccCcc--hHHHHHcCCccccccccceeeeEEECCCCEEEEE
Confidence 3333332 333444444544 479999998 468999999999999763
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.58 E-value=1.9e-15 Score=124.74 Aligned_cols=72 Identities=25% Similarity=0.616 Sum_probs=65.0
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.||+|||+|||+||++|+.+.|.|+++++++++. +.++.|..|..+ .+++.|+|
T Consensus 24 ~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~---~~~~~i~~d~~~-----------------------~l~~~~~V 77 (111)
T d1xwaa_ 24 SGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDECE-----------------------DIAMEYNI 77 (111)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCcccCccccchhHHHHhhhcccc---eEEEEEEeecCc-----------------------chhhcCCC
Confidence 5899999999999999999999999999999865 888888888765 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++ ++|+.+.+.
T Consensus 78 ~~~Pt~~~~-~~G~~v~~~ 95 (111)
T d1xwaa_ 78 SSMPTFVFL-KNGVKVEEF 95 (111)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred ccccEEEEE-ECCEEEEEE
Confidence 999999999 799998874
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=2e-15 Score=132.53 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=93.2
Q ss_pred ccCccCCc-eecCCCceeecCCCC--Cc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSLK--GK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~~--gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
+|++||+| +.+.+|+.++|+++. |+ |+++|| ++|||+|..+++.|.+.+++|++. +.+++|+.| +.+..++|
T Consensus 7 vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~--~~~~~is~d-~~~~~~~f 83 (156)
T d2a4va1 7 IGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY--AAVFGLSAD-SVTSQKKF 83 (156)
T ss_dssp TTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT--CEEEEEESC-CHHHHHHH
T ss_pred CCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc--cceeeeccc-hhhhHHhh
Confidence 79999999 667899999999995 45 666666 899999999999999999999753 678999987 77888999
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCCCCccE-----EEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKVMGIPH-----LVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~-----~~lid~~G~i~~~ 133 (569)
.++++..+..+.|.+. .+.+.||+...|. .++|+.+|+++.+
T Consensus 84 ~~~~~l~f~~L~D~~~--~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~ 130 (156)
T d2a4va1 84 QSKQNLPYHLLSDPKR--EFIGLLGAKKTPLSGSIRSHFIFVDGKLKFK 130 (156)
T ss_dssp HHHHTCSSEEEECTTC--HHHHHHTCBSSSSSCBCCEEEEEETTEEEEE
T ss_pred hcccCccceeccchHH--HHHHHcCCCccccCCeeEEEEEEECCeEEEE
Confidence 9999988777777654 7999999865552 4444478988764
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.58 E-value=2.6e-15 Score=132.89 Aligned_cols=116 Identities=18% Similarity=0.129 Sum_probs=92.3
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
-+|++||+| +.+.+|+.++|++++|| ++|.|| +.|||+|..+++.|.+.++++. ++.+++|+.| +....+++.
T Consensus 17 ~vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d-~~~~~~~~~ 92 (163)
T d1psqa_ 17 QVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD---NTVVLTVSMD-LPFAQKRWC 92 (163)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT---TEEEEEEESS-CHHHHHHHH
T ss_pred CCCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc---ccceEEEEec-cHHHHHHHH
Confidence 479999999 66789999999999999 888888 7899999999999998877774 4889999988 556667777
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCCC------ccEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVMG------IPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~------~P~~~lid~~G~i~~~ 133 (569)
.+.+.....+..+.....+.+.||+.. .+++||||++|+|++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~ 141 (163)
T d1psqa_ 93 GAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYV 141 (163)
T ss_dssp HHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEE
T ss_pred HHcCCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEE
Confidence 776655544433333346888898742 2468999999999874
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.57 E-value=1.7e-15 Score=134.13 Aligned_cols=116 Identities=19% Similarity=0.190 Sum_probs=94.5
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|++|||| +.+.+|+.++|++++|| ++|+|| +.|||.|..+++.|++.+++++ ++.+++|++| +.+..++|.
T Consensus 17 ~vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~---~~~vi~iS~d-~~~~~~~~~ 92 (164)
T d1q98a_ 17 QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS---NTIVLCISAD-LPFAQARFC 92 (164)
T ss_dssp CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST---TEEEEEEESS-CHHHHTTCT
T ss_pred CCCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc---cceEEeecCC-cHHHHHHHH
Confidence 479999999 66789999999999999 999998 6688899999999999999985 4899999998 566778888
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCC-------C--ccEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVM-------G--IPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~-------~--~P~~~lid~~G~i~~~ 133 (569)
++.+.......+......+.+.|++. + .|++||||++|+|++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~ 144 (164)
T d1q98a_ 93 GAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHS 144 (164)
T ss_dssp TTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred HHhCCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEE
Confidence 88877655444333334677888762 2 3889999999999874
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.57 E-value=3.5e-15 Score=132.06 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=99.7
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+|.+ +.+|++++|++++||++||.|| +.|||.|..+++.|.+.+.++. ++.+++|+.|. +...+++...
T Consensus 20 ~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~----~~~vv~Is~d~-~~~~~~~~~~ 94 (163)
T d1psqa_ 20 DKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD----NTVVLTVSMDL-PFAQKRWCGA 94 (163)
T ss_dssp SBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT----TEEEEEEESSC-HHHHHHHHHH
T ss_pred CCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc----ccceEEEEecc-HHHHHHHHHH
Confidence 45699988 9999999999999999999999 7899999999999987766663 58999999884 4556666665
Q ss_pred CCCcccccC-chhhHHHHHhcCCCC------ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhh
Q 008336 414 MPWLALPFG-DARKASLSRKFKVSG------IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEM 484 (569)
Q Consensus 414 ~~~~~~~~~-~d~~~~l~~~~~v~~------~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l 484 (569)
......+.. ++....+.+.||+.. .|++||||++|+|++.+.... +-.+.+++++++.+++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~~~~---------~~~~~~~~~il~alk~L 163 (163)
T d1psqa_ 95 EGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDN---------INSEPNFEAAIAAAKAL 163 (163)
T ss_dssp HTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSB---------TTSCCCHHHHHHHHHHC
T ss_pred cCCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEEcCC---------CCCCCCHHHHHHHHhcC
Confidence 543333333 445677899999753 247899999999998854321 12233456666666543
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.6e-14 Score=130.91 Aligned_cols=116 Identities=23% Similarity=0.306 Sum_probs=96.2
Q ss_pred cccCccCCcee----cCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 14 LLSSSARDFLI----RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 14 ~~g~~~pdf~~----~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
.||.+||+|.+ +.+|+.++|++++|| ++|+|| +.||+.|..++..|++.+++|.+.+ +.|++||.| +....+
T Consensus 6 ~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g-~~vigIS~D-~~~~~~ 83 (197)
T d1qmva_ 6 RIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLG-CEVLGVSVD-SQFTHL 83 (197)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT-EEEEEEESS-CHHHHH
T ss_pred cCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCC-cEEEEEecC-CHHHHH
Confidence 58999999943 347789999999999 999998 9999999999999999999999886 999999999 455667
Q ss_pred HHHHhC-------CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 88 GYFSKM-------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~-------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
+|.... +..++.+.|.. ..+++.||+. ..|++|+||++|+|+..
T Consensus 84 ~~~~~~~~~~~~~~~~fpll~D~~--~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~ 140 (197)
T d1qmva_ 84 AWINTPRKEGGLGPLNIPLLADVT--RRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQI 140 (197)
T ss_dssp HHHTSCGGGTCCCSCSSCEEECTT--CHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred hhhcchhhhcCcCCCccceEeccc--hHHHHHhCCCcccCCeeeEEEEEECCCCcEEEE
Confidence 787654 23444455544 4799999984 46889999999999863
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.55 E-value=2.8e-15 Score=133.14 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=92.9
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+|.+ +.+|+.++|++++||++||+|| +.|||.|.++++.|++.+++ . +++|++|+.|. ....+++.+.
T Consensus 21 ~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~---~--g~~vv~Is~d~-~~~~~~~~~~ 94 (166)
T d1xvqa_ 21 SPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---S--GATVLCVSKDL-PFAQKRFCGA 94 (166)
T ss_dssp SBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---T--TCEEEEEESSC-HHHHTTCC--
T ss_pred CCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhccc---c--cccccccccch-HHHHHHHHHH
Confidence 44699998 9999999999999999999999 55888899999988665444 3 58999999984 3556666665
Q ss_pred CCCcccccCchhhHHHHHhcCCC---------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhh
Q 008336 414 MPWLALPFGDARKASLSRKFKVS---------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNE 483 (569)
Q Consensus 414 ~~~~~~~~~~d~~~~l~~~~~v~---------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~ 483 (569)
+.........+....+.+.|++. ..|++||||++|+|++.+.... +..+.+++++.+.|+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~---------~~~~~~~d~il~aL~a 164 (166)
T d1xvqa_ 95 EGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPE---------IAQEPNYEAALAALGA 164 (166)
T ss_dssp ----CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSB---------TTCCCCHHHHHHHHHH
T ss_pred hCCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEEcCC---------CCCCCCHHHHHHHHHh
Confidence 55333333445566778888764 2478999999999998754221 1223355666666543
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.54 E-value=7.4e-15 Score=119.84 Aligned_cols=71 Identities=25% Similarity=0.562 Sum_probs=64.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|+++|+|||+||++|+.+.|.+.+++++++++ +.++.|++|..+ .+++.|+|+
T Consensus 17 ~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~V~ 70 (105)
T d1nw2a_ 17 DKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDENP-----------------------ETTSQFGIM 70 (105)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCcEEEEEECCCCCCcccccchhhhhhhhcCCc---eEEEEEECCCCc-----------------------ccHHHCCcc
Confidence 689999999999999999999999999999865 899999998775 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+.+.+.
T Consensus 71 ~~Pt~~~~-~~G~~~~~~ 87 (105)
T d1nw2a_ 71 SIPTLILF-KGGEPVKQL 87 (105)
T ss_dssp BSSEEEEE-ETTEEEEEE
T ss_pred eeeEEEEE-ECCEEEEEE
Confidence 99999999 689998874
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=7.9e-15 Score=135.06 Aligned_cols=138 Identities=15% Similarity=0.200 Sum_probs=109.2
Q ss_pred ccCCcccee-cCCCCceecccCCC-CEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--hhHHHH
Q 008336 335 VSGDLDFVV-GKNGGKVPVSDLAG-KTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QTSFDE 409 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~v~l~~~~g-k~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~--~~~~~~ 409 (569)
....|+|.+ +.+|+ ++|+++.| |++||+|| +.||+.|..++..|++.+++++++ +++|++||+|.. ...|.+
T Consensus 4 Gd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~--g~~v~giS~Ds~~sh~~~~~ 80 (220)
T d1prxa_ 4 GDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR--NVKLIALSIDSVEDHLAWSK 80 (220)
T ss_dssp TCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSCHHHHHHHHH
T ss_pred CCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcc--cceeeccccccccchhhhhh
Confidence 345799998 77875 99999987 79999999 789999999999999999999987 799999999964 233333
Q ss_pred HHhcC------CCcccccCchhhHHHHHhcCCC------------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCH
Q 008336 410 FFKGM------PWLALPFGDARKASLSRKFKVS------------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTE 471 (569)
Q Consensus 410 ~~~~~------~~~~~~~~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~ 471 (569)
....+ .-+.||++.|.+.++++.||+. ..+++||||++|+|++..... ...+
T Consensus 81 ~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~----------~~~g 150 (220)
T d1prxa_ 81 DINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYP----------ATTG 150 (220)
T ss_dssp HHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECC----------TTBC
T ss_pred hhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEec----------CCcc
Confidence 33211 2378999999999999999985 458999999999999874321 1344
Q ss_pred HHHHHHHHHhhhhh
Q 008336 472 ERMKEIDGQYNEMA 485 (569)
Q Consensus 472 ~~~~~l~~~l~~l~ 485 (569)
++++++.+.|+.+.
T Consensus 151 R~~dEiLr~l~alq 164 (220)
T d1prxa_ 151 RNFDEILRVVISLQ 164 (220)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHh
Confidence 56788888777764
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.54 E-value=3.7e-15 Score=132.34 Aligned_cols=114 Identities=22% Similarity=0.193 Sum_probs=83.8
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|++||+| +.+.+|+.++|++++|| +||+|| +.|||.|..+++.|++.+++ .+ +.|++|+.| +....+++.
T Consensus 18 ~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~---~g-~~vv~Is~d-~~~~~~~~~ 92 (166)
T d1xvqa_ 18 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SG-ATVLCVSKD-LPFAQKRFC 92 (166)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TT-CEEEEEESS-CHHHHTTCC
T ss_pred CCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhccc---cc-ccccccccc-hHHHHHHHH
Confidence 479999999 56789999999999999 999999 56888999999998776655 33 889999988 456677777
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCC---------CccEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVM---------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~ 133 (569)
+++...+....+.. ...+.+.|++. ..|++||||++|+|++.
T Consensus 93 ~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~ 143 (166)
T d1xvqa_ 93 GAEGTENVMPASAF-RDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYT 143 (166)
T ss_dssp ------CEEEEECT-TSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEE
T ss_pred HHhCCcccccccch-hHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEE
Confidence 77665555433222 23466777653 24789999999999874
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.54 E-value=1.1e-14 Score=119.28 Aligned_cols=71 Identities=23% Similarity=0.556 Sum_probs=64.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|+|||+|||+||++|+++.|.+.++.+++..+ +.++.|++|..+ ++++.|+|+
T Consensus 19 ~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~d~~~-----------------------~l~~~~~V~ 72 (107)
T d1dbya_ 19 SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDESP-----------------------NVASEYGIR 72 (107)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHHTCC
T ss_pred CCcEEEEEECCCCCCccccChHHHHHHHhhccc---ceEEEEecccch-----------------------hHHHHhccc
Confidence 689999999999999999999999999888765 889999998775 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+.+.+.
T Consensus 73 ~~Pt~~~~-~~G~~v~~~ 89 (107)
T d1dbya_ 73 SIPTIMVF-KGGKKCETI 89 (107)
T ss_dssp SSCEEEEE-SSSSEEEEE
T ss_pred ceEEEEEE-ECCeEEEEE
Confidence 99999999 589998874
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.53 E-value=1e-14 Score=120.31 Aligned_cols=71 Identities=17% Similarity=0.393 Sum_probs=64.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|+|+|+||++||++|+.+.|.|++++++++++ +.++.|++|..+ ++++.|+|+
T Consensus 24 ~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~~-----------------------~l~~~~~v~ 77 (112)
T d1ep7a_ 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDAVA-----------------------AVAEAAGIT 77 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTTH-----------------------HHHHHHTCC
T ss_pred CCeEEEEEEcCCcCCCcccchhhhhhhhcccce---EEEEEeeccccc-----------------------ccccccccc
Confidence 789999999999999999999999999998754 889999988765 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+.+.+.
T Consensus 78 ~~Pt~~~~-~~G~~v~~~ 94 (112)
T d1ep7a_ 78 AMPTFHVY-KDGVKADDL 94 (112)
T ss_dssp BSSEEEEE-ETTEEEEEE
T ss_pred CCCEEEEE-ECCEEEEEE
Confidence 99999999 799999884
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=9.5e-15 Score=119.11 Aligned_cols=70 Identities=21% Similarity=0.444 Sum_probs=61.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|+|+|+|||+||++|+.+.|.|.++.+++.+ +.++.|++|..+ ++++.|+|+
T Consensus 20 ~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~~vd~d~~~-----------------------~~~~~~~V~ 72 (105)
T d2ifqa1 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDCQ-----------------------DVASECEVK 72 (105)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCEEEEEEEcCCccchhhhhhhhhhhcccccc----ceeeecccccCH-----------------------hHHHHcCce
Confidence 68999999999999999999999999888753 567788888765 488999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+.+.+.
T Consensus 73 ~~Pt~~~~-~~G~~v~~~ 89 (105)
T d2ifqa1 73 CMPTFQFF-KKGQKVGEF 89 (105)
T ss_dssp BSSEEEEE-ETTEEEEEE
T ss_pred EEEEEEEE-ECCEEEEEE
Confidence 99999999 799999884
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=2.3e-14 Score=117.49 Aligned_cols=71 Identities=27% Similarity=0.578 Sum_probs=63.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++|+|+|||+||++|+.+.|.+.++++++..+ +.++.+++|.++ .+++.|+|+
T Consensus 20 ~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~vd~d~~~-----------------------~l~~~~~v~ 73 (108)
T d2trxa_ 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-----------------------GTAPKYGIR 73 (108)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCT-----------------------THHHHTTCC
T ss_pred CCcEEEEEECCCCCCccccCcHHHHHHHHhhcc---eeeeeccccchh-----------------------hHHHHhCCC
Confidence 689999999999999999999999999888654 888899888765 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+.+.+.
T Consensus 74 ~~PT~~~~-~~G~~v~~~ 90 (108)
T d2trxa_ 74 GIPTLLLF-KNGEVAATK 90 (108)
T ss_dssp SSSEEEEE-ETTEEEEEE
T ss_pred cEEEEEEE-ECCEEEEEE
Confidence 99999999 689998874
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=9.9e-14 Score=123.90 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=63.0
Q ss_pred cccee-cCC-CCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHHHH
Q 008336 339 LDFVV-GKN-GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDE 409 (569)
Q Consensus 339 ~~f~~-~~~-g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~~~ 409 (569)
-||.+ +.+ |+.++|++++||+|||.+||+||++|.+..+.|++++++|+++ +++|+++.+++ +.+++++
T Consensus 4 ydf~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~--g~~Il~fP~nqF~~qE~~~~~ei~~ 81 (184)
T d2f8aa1 4 YAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR--GLVVLGFPCNQFGHQENAKNEEILN 81 (184)
T ss_dssp GGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTTTCSCHHHHHH
T ss_pred eeeEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhccc--ceeEEEeeccccccccccchhhhhh
Confidence 36777 765 7889999999999999999999999999999999999999987 79999999874 3456777
Q ss_pred HHh
Q 008336 410 FFK 412 (569)
Q Consensus 410 ~~~ 412 (569)
+++
T Consensus 82 f~~ 84 (184)
T d2f8aa1 82 SLK 84 (184)
T ss_dssp HHH
T ss_pred hhh
Confidence 775
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.8e-14 Score=117.55 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=62.6
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|+++|+||++||++|+++.|.|.+++++++ ++.++.|++|..+ ++++.|+|+
T Consensus 21 ~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~----~~~f~~vd~d~~~-----------------------~l~~~~~v~ 73 (107)
T d1gh2a_ 21 SRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP----QAVFLEVDVHQCQ-----------------------GTAATNNIS 73 (107)
T ss_dssp TSCEEEEEECSSCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSH-----------------------HHHHHTTCC
T ss_pred CCEEEEEEECCCCCCccccchhhhccccccc----cccccccccccch-----------------------hhhhhcCce
Confidence 6899999999999999999999999998875 3788888888765 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+.+.+.
T Consensus 74 ~~Pt~~~~-~~G~~v~~~ 90 (107)
T d1gh2a_ 74 ATPTFQFF-RNKVRIDQY 90 (107)
T ss_dssp SSSEEEEE-ETTEEEEEE
T ss_pred eceEEEEE-ECCEEEEEE
Confidence 99999999 899999884
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.51 E-value=1.9e-14 Score=118.73 Aligned_cols=70 Identities=17% Similarity=0.450 Sum_probs=63.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+|||+||++|+.+.|.|.++++++. ++.++.|++|..+ ++++.|+|+
T Consensus 26 ~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~-----------------------~l~~~~~V~ 78 (113)
T d1r26a_ 26 DILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDADNNS-----------------------EIVSKCRVL 78 (113)
T ss_dssp SSCEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCeEEEEEECCCCccchhhceeccccccccc----cccccccccccch-----------------------hhHHHcccc
Confidence 6799999999999999999999999998875 4899999998775 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+.+.+.
T Consensus 79 ~~Pt~~~~-~~G~~v~~~ 95 (113)
T d1r26a_ 79 QLPTFIIA-RSGKMLGHV 95 (113)
T ss_dssp SSSEEEEE-ETTEEEEEE
T ss_pred CCCEEEEE-ECCEEEEEE
Confidence 99999999 799999874
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.50 E-value=2.5e-14 Score=118.40 Aligned_cols=70 Identities=23% Similarity=0.561 Sum_probs=62.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
++++||+|||+||++|+.+.|.|.++++.++ ++.++.|+.|..+ .+++.|+|+
T Consensus 28 ~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~----~~~~~~vd~~~~~-----------------------~l~~~~~V~ 80 (114)
T d1xfla_ 28 KTLVVVDFTASWCGPCRFIAPFFADLAKKLP----NVLFLKVDTDELK-----------------------SVASDWAIQ 80 (114)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTSH-----------------------HHHHHTTCC
T ss_pred CCeEEEEEEcCCCCCccccccchhhhccccc----ccceeEEEeeece-----------------------eecccccee
Confidence 7899999999999999999999999988875 4778888877665 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+++.+.
T Consensus 81 ~~Pt~~~~-~~G~~v~~~ 97 (114)
T d1xfla_ 81 AMPTFMFL-KEGKILDKV 97 (114)
T ss_dssp SSSEEEEE-ETTEEEEEE
T ss_pred eeEEEEEE-ECCEEEEEE
Confidence 99999999 899999874
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.50 E-value=3.1e-14 Score=115.89 Aligned_cols=71 Identities=18% Similarity=0.489 Sum_probs=64.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+++.|.+.++.+++.++ +.++.|+.|.++ .++++|+|+
T Consensus 17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~v~~d~~~-----------------------~l~~~~~V~ 70 (104)
T d1fb6a_ 17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEAP-----------------------GIATQYNIR 70 (104)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCcEEEEEEcCccCCccccCchhHHHHHhhcCc---cceeEEecccch-----------------------hhhhhccee
Confidence 689999999999999999999999999998765 788889888775 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+.+.+.
T Consensus 71 ~~Pt~~~~-~~G~~v~~~ 87 (104)
T d1fb6a_ 71 SIPTVLFF-KNGERKESI 87 (104)
T ss_dssp SSSEEEEE-ETTEEEEEE
T ss_pred eeeEEEEE-EcCeEEEEE
Confidence 99999999 799998874
|
| >d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: C1-like domain domain: Pdi-like hypothetical protein At1g60420 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.50 E-value=3.3e-15 Score=115.11 Aligned_cols=80 Identities=59% Similarity=1.174 Sum_probs=75.0
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhcCCCcccccccc-cceeeecccCeeeccCCCCCCCceeEEcCCCCCCccccccCCcC
Q 008336 463 GAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGED 541 (569)
Q Consensus 463 g~~~~p~~~~~~~~l~~~l~~l~~~~~~~~~~~~~-~~~l~~~~~~~~~c~~C~~~g~~~~~~~~~~~~~~~~~~~~~~~ 541 (569)
|..+||+|+....++..++.+.-+++|.+++|..| .|+|.|.....+.|+.|...+.+|.|+|..|+|+||..||+..+
T Consensus 1 ~~~~~~~t~~~~~e~~~~~he~c~~~P~~I~Hp~Hp~H~L~L~~~~~~~C~~C~~~~~g~~Y~C~~C~f~LH~~CA~~P~ 80 (89)
T d1v5na_ 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNED 80 (89)
T ss_dssp CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECCSSCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSS
T ss_pred CCccCCchHHHHHHHHhhhhHHHhcCCCeecCCCCCCCCeEEecCCCCEeCCCCCCcCCcEeEeccCCCEecHHHcCCCc
Confidence 46789999999999999999999999999999999 69999998899999999999999999999999999999998654
Q ss_pred C
Q 008336 542 K 542 (569)
Q Consensus 542 ~ 542 (569)
+
T Consensus 81 ~ 81 (89)
T d1v5na_ 81 T 81 (89)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.50 E-value=3e-14 Score=116.75 Aligned_cols=71 Identities=30% Similarity=0.619 Sum_probs=63.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+++.|.|.++++++++. +.++.|++|.++ .+++.|+|+
T Consensus 20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~d~~~-----------------------~l~~~~~I~ 73 (108)
T d1thxa_ 20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPNP-----------------------TTVKKYKVE 73 (108)
T ss_dssp SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTCH-----------------------HHHHHTTCC
T ss_pred CCcEEEEEECCCCCCccccchHHHHHHHhcCCc---ceeceecccccH-----------------------HHHHHhccc
Confidence 589999999999999999999999999998765 899999998775 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+.+.+.
T Consensus 74 ~~Pt~~~~-~~g~~v~~~ 90 (108)
T d1thxa_ 74 GVPALRLV-KGEQILDST 90 (108)
T ss_dssp SSSEEEEE-ETTEEEEEE
T ss_pred CCCEEEEE-ECCEEEEEE
Confidence 99999999 589988774
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1e-13 Score=127.43 Aligned_cols=115 Identities=16% Similarity=0.195 Sum_probs=90.0
Q ss_pred cccCccCCcee-cCCCceeecCCCCC-c-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 14 LLSSSARDFLI-RSNGDQVKLDSLKG-K-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 14 ~~g~~~pdf~~-~~~g~~v~l~~~~g-k-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
+||++||||.+ +.+|+ ++|+++.| | ++|+|| +.|||.|..+++.|++.++++.+.+ ++|++||+|. .+...+|
T Consensus 2 ~VGd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g-~~v~giS~Ds-~~sh~~~ 78 (220)
T d1prxa_ 2 LLGDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN-VKLIALSIDS-VEDHLAW 78 (220)
T ss_dssp CTTCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT-EEEEEEESSC-HHHHHHH
T ss_pred CCCCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhccc-ceeecccccc-ccchhhh
Confidence 58999999954 56775 99999988 5 888887 7899999999999999999999886 9999999994 3444444
Q ss_pred HHh----------CCCcccccCCchhHHHHHHhcCCC------------CccEEEEECCCCcEEEc
Q 008336 90 FSK----------MPWLAVPFSDSETRDKLDELFKVM------------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~----------~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~ 133 (569)
.+. .+..+..+.|.+ ..+++.||+. ..+++||||++|+|+..
T Consensus 79 ~~~~~~~~~~~~~~~l~fpllsD~~--~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~ 142 (220)
T d1prxa_ 79 SKDINAYNSEEPTEKLPFPIIDDRN--RELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLS 142 (220)
T ss_dssp HHHHHHHTTSCCCSCCSSCEEECTT--CHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEE
T ss_pred hhhhhhccccccccCcccccccCcc--cHHHHHhCCccccccccccceeeeEEEEEEcCccceeEE
Confidence 322 123444445544 4799999984 46899999999999863
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.3e-13 Score=121.30 Aligned_cols=134 Identities=22% Similarity=0.363 Sum_probs=97.1
Q ss_pred ccee-cCCCCceecccCCCCEEEEEEecCCCh-hHHhhhHHHHHHHHHHhhc--CCCeEEEEEeCCC---ChhHHHHHHh
Q 008336 340 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKER--NESLEVVFISSDR---DQTSFDEFFK 412 (569)
Q Consensus 340 ~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~--~~~~~vv~is~d~---~~~~~~~~~~ 412 (569)
||.+ |.+|+++++++|+||++||+||++||+ .|....+.+.++++++... ...+.++.++.+. ......++..
T Consensus 2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (160)
T d1wp0a1 2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVK 81 (160)
T ss_dssp CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHH
T ss_pred CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHh
Confidence 6877 999999999999999999999999997 5999999999999988754 2346667777753 3445555555
Q ss_pred cC--CCcccccCchhhHHHHHhcCCCC---------------ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHH
Q 008336 413 GM--PWLALPFGDARKASLSRKFKVSG---------------IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 475 (569)
Q Consensus 413 ~~--~~~~~~~~~d~~~~l~~~~~v~~---------------~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~ 475 (569)
.. +|..++........+.+.|++.. .++++|||++|+|+...++. .. .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~-----------~~---~~ 147 (160)
T d1wp0a1 82 EFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQN-----------KR---KG 147 (160)
T ss_dssp TTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETT-----------CC---HH
T ss_pred hcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCC-----------CC---HH
Confidence 44 34455544445556777777542 36889999999999874211 11 24
Q ss_pred HHHHHhhhhhcC
Q 008336 476 EIDGQYNEMAKG 487 (569)
Q Consensus 476 ~l~~~l~~l~~~ 487 (569)
++.+.|++++++
T Consensus 148 ~i~~~I~~~lk~ 159 (160)
T d1wp0a1 148 EIAASIATHMRP 159 (160)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 567777777654
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.49 E-value=2.6e-14 Score=126.31 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=92.5
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+|.+ +.+|++++|++++||++||+|| +.|||.|..+++.|++.+++++ +..|++||+|. +...++|.+.
T Consensus 20 ~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~----~~~vi~iS~d~-~~~~~~~~~~ 94 (164)
T d1q98a_ 20 EIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS----NTIVLCISADL-PFAQARFCGA 94 (164)
T ss_dssp CBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST----TEEEEEEESSC-HHHHTTCTTT
T ss_pred CCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc----cceEEeecCCc-HHHHHHHHHH
Confidence 44699988 9999999999999999999999 5588889999999999999885 47999999984 4666777777
Q ss_pred CCCcccccC-chhhHHHHHhcCCC-------C--ccEEEEECCCCcEEEccc
Q 008336 414 MPWLALPFG-DARKASLSRKFKVS-------G--IPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 414 ~~~~~~~~~-~d~~~~l~~~~~v~-------~--~Pt~~lid~~G~i~~~~~ 455 (569)
++...++.. .+....+.+.|++. + .|++||||++|+|++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~ 146 (164)
T d1q98a_ 95 EGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQL 146 (164)
T ss_dssp TTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred hCCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEE
Confidence 664434333 34456788888863 2 388999999999999853
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.47 E-value=2.8e-14 Score=117.87 Aligned_cols=71 Identities=24% Similarity=0.626 Sum_probs=62.6
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|+|||+||++||++|+.+.|.|.++.+++. ++.++.|++|..+ .+++.|+|+
T Consensus 26 ~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~d~~~-----------------------~l~~~~~I~ 78 (113)
T d1ti3a_ 26 QKLIVVDFTASWCPPCKMIAPIFAELAKKFP----NVTFLKVDVDELK-----------------------AVAEEWNVE 78 (113)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTCH-----------------------HHHHHHHCS
T ss_pred CCEEEEEEEcCccccchhhhhhhhhhhccCC----CceEEeeeeeccc-----------------------cccccCeec
Confidence 7899999999999999999999999988874 4678888888765 489999999
Q ss_pred CccEEEEECCCCcEEEccc
Q 008336 437 GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~ 455 (569)
++||++++ ++|+.+.+..
T Consensus 79 ~~Pt~~~~-k~G~~v~~~~ 96 (113)
T d1ti3a_ 79 AMPTFIFL-KDGKLVDKTV 96 (113)
T ss_dssp STTEEEEE-ETTEEEEEEE
T ss_pred ccceEEEE-ECCEEEEEEc
Confidence 99999999 6999998843
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.45 E-value=9.1e-14 Score=114.40 Aligned_cols=74 Identities=31% Similarity=0.652 Sum_probs=64.2
Q ss_pred cCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHH
Q 008336 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (569)
+.+..|| ++|+|||+||++|+.+.|.+.++++++++ .+.++.|++|..+ .+++
T Consensus 20 l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~~i~~d~~~------------------------~l~~ 73 (111)
T d1xwaa_ 20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECE------------------------DIAM 73 (111)
T ss_dssp HHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCH------------------------HHHH
T ss_pred HHhcCCCEEEEEEECCcccCccccchhHHHHhhhccc--ceEEEEEEeecCc------------------------chhh
Confidence 4445789 99999999999999999999999999874 4888999998774 4889
Q ss_pred hcCCCCccEEEEECCCCcEEEc
Q 008336 112 LFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 112 ~~~v~~~P~~~lid~~G~i~~~ 133 (569)
.|+|.++||++++ ++|+.+.+
T Consensus 74 ~~~V~~~Pt~~~~-~~G~~v~~ 94 (111)
T d1xwaa_ 74 EYNISSMPTFVFL-KNGVKVEE 94 (111)
T ss_dssp HTTCCSSSEEEEE-ETTEEEEE
T ss_pred cCCCccccEEEEE-ECCEEEEE
Confidence 9999999999999 78887753
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.8e-13 Score=115.00 Aligned_cols=71 Identities=11% Similarity=0.274 Sum_probs=64.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|+|||.|||+||++|+++.|.|.++++++++. +.++.|++|..+ ++++.|+|+
T Consensus 22 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~VDvd~~~-----------------------~la~~~~I~ 75 (137)
T d1qgva_ 22 DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEVP-----------------------DFNKMYELY 75 (137)
T ss_dssp SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCC-----------------------TTTTSSCSC
T ss_pred CCEEEEEEECCCCccchhcChHHHHHHHHhhcc---ceEEEeeccccc-----------------------hhhhhcCee
Confidence 689999999999999999999999999999865 889999998776 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+.+...
T Consensus 76 ~~PT~~~f-~~g~~i~~~ 92 (137)
T d1qgva_ 76 DPCTVMFF-FRNKHIMID 92 (137)
T ss_dssp SSCEEEEE-ETTEEEEEE
T ss_pred eEEEEEEE-eCCcEEEEE
Confidence 99999999 788877654
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.44 E-value=2.8e-13 Score=120.12 Aligned_cols=112 Identities=19% Similarity=0.244 Sum_probs=89.6
Q ss_pred ccCCcee-----cCCCceeecCCCCC-c-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 18 SARDFLI-----RSNGDQVKLDSLKG-K-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 18 ~~pdf~~-----~~~g~~v~l~~~~g-k-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
.||||.+ +.++++++|++++| | +||+|| +.|||.|..+++.|++.+++|.+.| +.|++|+.| +....++|
T Consensus 1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g-~~vigIS~D-~~~~~~~~ 78 (170)
T d2h01a1 1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN-VELLGCSVD-SKFTHLAW 78 (170)
T ss_dssp BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT-EEEEEEESS-CHHHHHHH
T ss_pred CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCC-eeEecccCC-cHHHHHhH
Confidence 4899944 34667899999998 5 889998 8999999999999999999999886 999999999 55666777
Q ss_pred HHhCC-------CcccccCCchhHHHHHHhcCCC-----CccEEEEECCCCcEEEc
Q 008336 90 FSKMP-------WLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~-------~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~ 133 (569)
.++.. ..+..+.|.+ ..+.+.||+. ..+++||||++|+|+..
T Consensus 79 ~~~~~~~~~~~~~~f~llsD~~--~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~ 132 (170)
T d2h01a1 79 KKTPLSQGGIGNIKHTLISDIS--KSIARSYDVLFNESVALRAFVLIDKQGVVQHL 132 (170)
T ss_dssp HTSCGGGTCCCSCSSEEEECTT--SHHHHHTTCEETTTEECCEEEEECTTSBEEEE
T ss_pred hhhhhhhccccccCCceeEcCc--cHHHHHhCCccccccceeeeEEEcCCCeEEEE
Confidence 76542 3333344444 4788999983 45899999999999863
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.44 E-value=4.8e-13 Score=109.21 Aligned_cols=70 Identities=23% Similarity=0.589 Sum_probs=61.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ |+|+|||+||++|+++.|.+.++++++.. ++.++.|++|..+ .+++.|+|
T Consensus 18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~d~~~------------------------~l~~~~~V 71 (107)
T d1dbya_ 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESP------------------------NVASEYGI 71 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCH------------------------HHHHHHTC
T ss_pred CCCcEEEEEECCCCCCccccChHHHHHHHhhcc--cceEEEEecccch------------------------hHHHHhcc
Confidence 467 99999999999999999999999988865 4789999999774 48899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
+++||++++ ++|+.+.+
T Consensus 72 ~~~Pt~~~~-~~G~~v~~ 88 (107)
T d1dbya_ 72 RSIPTIMVF-KGGKKCET 88 (107)
T ss_dssp CSSCEEEEE-SSSSEEEE
T ss_pred cceEEEEEE-ECCeEEEE
Confidence 999999999 57887753
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.44 E-value=1.2e-13 Score=113.72 Aligned_cols=71 Identities=15% Similarity=0.454 Sum_probs=61.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|+++|+||++||++|+.+.|.|.+++++++ ++.++.|+.|... .++++.|+|+
T Consensus 25 ~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~----~v~~~~vd~~~~~----------------------~~l~~~~~V~ 78 (112)
T d1f9ma_ 25 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL----DVIFLKLDCNQEN----------------------KTLAKELGIR 78 (112)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSTT----------------------HHHHHHHCCS
T ss_pred CCEEEEEEEcCCCcchHHHHHHHhhhccccc----cceeecccccccc----------------------hhhHhheeec
Confidence 5899999999999999999999999999875 3677778776421 3589999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+++.+.
T Consensus 79 ~~Pt~~~~-k~G~~v~~~ 95 (112)
T d1f9ma_ 79 VVPTFKIL-KENSVVGEV 95 (112)
T ss_dssp SSSEEEEE-ETTEEEEEE
T ss_pred cCCEEEEE-ECCEEEEEE
Confidence 99999999 799999884
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.44 E-value=1.5e-13 Score=111.44 Aligned_cols=70 Identities=17% Similarity=0.461 Sum_probs=62.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|.++++++++ ..++.+++|..+ ++++.|+|+
T Consensus 18 ~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~----~~~~~vd~d~~~-----------------------~~~~~~~V~ 70 (103)
T d1syra_ 18 NELVIVDFFAEWCGPCKRIAPFYEECSKTYTK----MVFIKVDVDEVS-----------------------EVTEKENIT 70 (103)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTTH-----------------------HHHHHTTCC
T ss_pred CCcEEEEEeCCcccCcccccccchhhhhcccc----eEEEeeccccCc-----------------------ceeeeeeee
Confidence 68999999999999999999999999998853 578888888665 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+.+.+.
T Consensus 71 ~~Pt~i~~-k~G~~v~~~ 87 (103)
T d1syra_ 71 SMPTFKVY-KNGSSVDTL 87 (103)
T ss_dssp SSSEEEEE-ETTEEEEEE
T ss_pred cceEEEEE-ECCEEEEEE
Confidence 99999999 799998874
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=4.4e-13 Score=109.66 Aligned_cols=85 Identities=29% Similarity=0.609 Sum_probs=68.1
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ |+|+|||+||++|+.+.|.+.+++.++.. ++.++.+++|.++ .++..|+|.
T Consensus 20 ~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~vd~d~~~------------------------~l~~~~~v~ 73 (108)
T d2trxa_ 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNP------------------------GTAPKYGIR 73 (108)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCT------------------------THHHHTTCC
T ss_pred CCcEEEEEECCCCCCccccCcHHHHHHHHhhc--ceeeeeccccchh------------------------hHHHHhCCC
Confidence 56 99999999999999999999999988764 5899999998763 488999999
Q ss_pred CccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHH
Q 008336 117 GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (569)
++||++++ ++|+.+.+ ..| ..+.+.+.+++++
T Consensus 74 ~~PT~~~~-~~G~~v~~-------~~G----~~~~~~l~~~i~~ 105 (108)
T d2trxa_ 74 GIPTLLLF-KNGEVAAT-------KVG----ALSKGQLKEFLDA 105 (108)
T ss_dssp SSSEEEEE-ETTEEEEE-------EES----CCCHHHHHHHHHH
T ss_pred cEEEEEEE-ECCEEEEE-------EeC----CCCHHHHHHHHHH
Confidence 99999998 68887753 112 2355666666643
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.42 E-value=1.9e-13 Score=125.05 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=107.3
Q ss_pred ccCCcccee-cCCC-CceecccC-CCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHH
Q 008336 335 VSGDLDFVV-GKNG-GKVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 410 (569)
Q Consensus 335 ~~~~~~f~~-~~~g-~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~ 410 (569)
....|+|.+ +.++ .+++++++ +||++||+|| +.|||.|..++..+++.+++|+++ +++|++||+|.. ...++|
T Consensus 5 Gd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~--~~~vigiS~Ds~-~sh~~w 81 (219)
T d1xcca_ 5 GATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL--NCKLIGFSCNSK-ESHDKW 81 (219)
T ss_dssp TCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT--TEEEEEEESSCH-HHHHHH
T ss_pred CCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhccc--ceEEEeecCccH-hHHhHH
Confidence 345799998 4433 37899985 7899999999 899999999999999999999987 799999999954 343444
Q ss_pred Hhc------CCCcccccCchhhHHHHHhcCCC------------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHH
Q 008336 411 FKG------MPWLALPFGDARKASLSRKFKVS------------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEE 472 (569)
Q Consensus 411 ~~~------~~~~~~~~~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~ 472 (569)
.+. ..-+.||++.|.+..+++.||+. ...++||||++|+|++..... .-.++
T Consensus 82 ~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~----------~~~gr 151 (219)
T d1xcca_ 82 IEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYP----------ATTGR 151 (219)
T ss_dssp HHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEEC----------TTBCC
T ss_pred hhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeC----------CCccc
Confidence 432 23478999999999999999983 236999999999998874211 12355
Q ss_pred HHHHHHHHhhhhh
Q 008336 473 RMKEIDGQYNEMA 485 (569)
Q Consensus 473 ~~~~l~~~l~~l~ 485 (569)
+++++++.|+.+.
T Consensus 152 ~~~EiLr~l~aLQ 164 (219)
T d1xcca_ 152 NAHEILRVLKSLQ 164 (219)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777877777664
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.42 E-value=3.3e-13 Score=110.22 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhc-CCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
.++++++.||++||+||+++.|.+.+++...... ...+.++.|+.+..+ ++++.|+
T Consensus 14 ~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~-----------------------~l~~~~~ 70 (107)
T d1a8la2 14 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP-----------------------EWADQYN 70 (107)
T ss_dssp CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCH-----------------------HHHHHTT
T ss_pred CCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccccc-----------------------ccccccc
Confidence 3567788899999999999999999998765432 234666667666544 5899999
Q ss_pred CCCccEEEEECCCCcEEEcc
Q 008336 435 VSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~~~ 454 (569)
|+++||++++ ++|+.+.+.
T Consensus 71 V~~vPTi~i~-~~G~~~~~~ 89 (107)
T d1a8la2 71 VMAVPKIVIQ-VNGEDRVEF 89 (107)
T ss_dssp CCSSCEEEEE-ETTEEEEEE
T ss_pred cccceEEEEE-eCCeEEEEE
Confidence 9999998766 899998874
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=7.9e-14 Score=116.06 Aligned_cols=81 Identities=19% Similarity=0.394 Sum_probs=60.0
Q ss_pred ccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 353 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 353 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
++.+||+|||+|||+||++|+.+.|.+.+..+..+. ..++.++.+.++.+. +...++++.
T Consensus 18 ~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~-------------------~~~~~l~~~ 77 (117)
T d2fwha1 18 VEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKA-LADTVLLQANVTAND-------------------AQDVALLKH 77 (117)
T ss_dssp HHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHH-TTTSEEEEEECTTCC-------------------HHHHHHHHH
T ss_pred HHcCCCeEEEEEecccCCcccccchhHHhHHHHHHh-ccceEEEecccccch-------------------hHHHHHHhh
Confidence 344599999999999999999999987443332221 124666666665442 224578999
Q ss_pred cCCCCccEEEEECCCCcEEEc
Q 008336 433 FKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~~ 453 (569)
|+|.++||++++|++|+++..
T Consensus 78 ~~v~~~Pt~~~~~~~G~~~~~ 98 (117)
T d2fwha1 78 LNVLGLPTILFFDGQGQEHPQ 98 (117)
T ss_dssp TTCCSSSEEEEECTTSCBCGG
T ss_pred hehhhceEEEEEeCCCcEEec
Confidence 999999999999999998754
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.42 E-value=6.2e-13 Score=108.73 Aligned_cols=85 Identities=26% Similarity=0.568 Sum_probs=68.3
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+|||+||++|+++.|.+.++++++.+ .+.++.|++|.++ .+++.|+|+
T Consensus 20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~d~~~------------------------~l~~~~~I~ 73 (108)
T d1thxa_ 20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSD--RLKVVKLEIDPNP------------------------TTVKKYKVE 73 (108)
T ss_dssp SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEESTTCH------------------------HHHHHTTCC
T ss_pred CCcEEEEEECCCCCCccccchHHHHHHHhcCC--cceeceecccccH------------------------HHHHHhccc
Confidence 46 99999999999999999999999999875 4889999999774 489999999
Q ss_pred CccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHH
Q 008336 117 GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (569)
++||++++ ++|+.+.+ ..| ..+.+.+.+++++
T Consensus 74 ~~Pt~~~~-~~g~~v~~-------~~G----~~~~~~l~~~i~~ 105 (108)
T d1thxa_ 74 GVPALRLV-KGEQILDS-------TEG----VISKDKLLSFLDT 105 (108)
T ss_dssp SSSEEEEE-ETTEEEEE-------EES----CCCHHHHHHHHHH
T ss_pred CCCEEEEE-ECCEEEEE-------EeC----CCCHHHHHHHHHH
Confidence 99999999 47877653 112 2355666666643
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.41 E-value=7.1e-13 Score=107.59 Aligned_cols=69 Identities=26% Similarity=0.592 Sum_probs=60.6
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+|||+||++|+++.|.+.++++++... +.++.|++|.++ .+++.|+|+
T Consensus 17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~--~~~~~v~~d~~~------------------------~l~~~~~V~ 70 (104)
T d1fb6a_ 17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK--IAVYKLNTDEAP------------------------GIATQYNIR 70 (104)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT--CEEEEEETTTCH------------------------HHHHHTTCC
T ss_pred CCcEEEEEEcCccCCccccCchhHHHHHhhcCc--cceeEEecccch------------------------hhhhhccee
Confidence 56 999999999999999999999999998753 688889999774 489999999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 117 GIPHLVILDENGKVLSD 133 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~ 133 (569)
++||++++ ++|+.+.+
T Consensus 71 ~~Pt~~~~-~~G~~v~~ 86 (104)
T d1fb6a_ 71 SIPTVLFF-KNGERKES 86 (104)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred eeeEEEEE-EcCeEEEE
Confidence 99999999 68988753
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.2e-13 Score=114.70 Aligned_cols=80 Identities=24% Similarity=0.532 Sum_probs=63.9
Q ss_pred cCCCCEEEEEEecC-------CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhh
Q 008336 354 DLAGKTILLYFSAH-------WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARK 426 (569)
Q Consensus 354 ~~~gk~vll~F~a~-------wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~ 426 (569)
+.+||+|+|+|||+ ||+||+++.|.+.++++.++++ +.++.|++++.++ ..|.+
T Consensus 18 ~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~---~~~~~vdv~~~~~----------------~~d~~ 78 (119)
T d1woua_ 18 QHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKPY----------------WKDPN 78 (119)
T ss_dssp TTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHHH----------------HHCTT
T ss_pred HcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCc---eEEEEEECCCCcc----------------cchhh
Confidence 34689999999995 9999999999999998887654 8999999875432 11334
Q ss_pred HHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 427 ASLSRKFKVSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 427 ~~l~~~~~v~~~Pt~~lid~~G~i~~ 452 (569)
..+++.|+|+++||+++++..++++.
T Consensus 79 ~~l~~~~~V~~iPT~i~~~~g~~l~~ 104 (119)
T d1woua_ 79 NDFRKNLKVTAVPTLLKYGTPQKLVE 104 (119)
T ss_dssp CHHHHHHCCCSSSEEEETTSSCEEEG
T ss_pred hhHHHhCCeEEEEEEEEEECCeEEee
Confidence 56889999999999999976555554
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.40 E-value=4.6e-13 Score=108.93 Aligned_cols=70 Identities=29% Similarity=0.626 Sum_probs=61.9
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+|||+||++|+.+.|.+.++++++++ ++.++.|+++..+ .+++.|+|
T Consensus 16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~V 69 (105)
T d1nw2a_ 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENP------------------------ETTSQFGI 69 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCCCcccccchhhhhhhhcCC--ceEEEEEECCCCc------------------------ccHHHCCc
Confidence 357 99999999999999999999999999875 4899999999774 48899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
.++||++++ ++|+.+.+
T Consensus 70 ~~~Pt~~~~-~~G~~~~~ 86 (105)
T d1nw2a_ 70 MSIPTLILF-KGGEPVKQ 86 (105)
T ss_dssp CBSSEEEEE-ETTEEEEE
T ss_pred ceeeEEEEE-ECCEEEEE
Confidence 999999999 67887753
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.3e-12 Score=113.84 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=63.3
Q ss_pred cCCcee-cCC-CceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-------CHHHHHH
Q 008336 19 ARDFLI-RSN-GDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDEAFKG 88 (569)
Q Consensus 19 ~pdf~~-~~~-g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-------~~~~~~~ 88 (569)
+-||.+ +++ |+.++|++++|| +||.+||+||++|.+..+.|++++++|+++| ++|+++.++. +.+.+.+
T Consensus 3 iydf~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g-~~Il~fP~nqF~~qE~~~~~ei~~ 81 (184)
T d2f8aa1 3 VYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG-LVVLGFPCNQFGHQENAKNEEILN 81 (184)
T ss_dssp GGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT-EEEEEEECCCSTTTTCSCHHHHHH
T ss_pred eeeeEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccc-eeEEEeeccccccccccchhhhhh
Confidence 457855 665 788999999999 9999999999999999999999999999987 9999999873 4567888
Q ss_pred HHHh
Q 008336 89 YFSK 92 (569)
Q Consensus 89 ~~~~ 92 (569)
+++.
T Consensus 82 f~~~ 85 (184)
T d2f8aa1 82 SLKY 85 (184)
T ss_dssp HHHH
T ss_pred hhhe
Confidence 8763
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.37 E-value=1.4e-12 Score=119.23 Aligned_cols=115 Identities=15% Similarity=0.252 Sum_probs=91.1
Q ss_pred cccCccCCceec-CC-CceeecCCC-CCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHH
Q 008336 14 LLSSSARDFLIR-SN-GDQVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 88 (569)
Q Consensus 14 ~~g~~~pdf~~~-~~-g~~v~l~~~-~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~ 88 (569)
.||++||||.+. .+ ...++++++ +|| ++|+|| +.|||.|..++..|++.+++|.+.+ ++|++||+| +....++
T Consensus 3 ~iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~-~~vigiS~D-s~~sh~~ 80 (219)
T d1xcca_ 3 HLGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN-CKLIGFSCN-SKESHDK 80 (219)
T ss_dssp CTTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT-EEEEEEESS-CHHHHHH
T ss_pred cCCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccc-eEEEeecCc-cHhHHhH
Confidence 479999999664 43 336999986 788 999998 9999999999999999999999886 999999999 4555566
Q ss_pred HHHhC-------CCcccccCCchhHHHHHHhcCCC------------CccEEEEECCCCcEEE
Q 008336 89 YFSKM-------PWLAVPFSDSETRDKLDELFKVM------------GIPHLVILDENGKVLS 132 (569)
Q Consensus 89 ~~~~~-------~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~i~~ 132 (569)
|.+.. ++.+..+.|.+ ..+++.||+. ...++||||++|+|+.
T Consensus 81 w~~~~~~~~~~~~l~fpllsD~~--~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~ 141 (219)
T d1xcca_ 81 WIEDIKYYGKLNKWEIPIVCDES--RELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKA 141 (219)
T ss_dssp HHHHHHHHHTCSCCCCCEEECTT--SHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEE
T ss_pred HhhhhHhhcccCCCCcccccccc--cHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEE
Confidence 65542 34455555555 4799999982 2368899999999976
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.37 E-value=1.9e-13 Score=106.64 Aligned_cols=67 Identities=16% Similarity=0.343 Sum_probs=55.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|+.|++|||+||+||+.+.|.+.++++.+... +.++.+..|..+ ++++.|+|+
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~~~~d~~~-----------------------~la~~~~V~ 55 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMENP-----------------------QKAMEYGIM 55 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSSC-----------------------CTTTSTTTC
T ss_pred CceEEEEEECCCCcChHhhhhhccccccccccc---cccccccccccc-----------------------cccccCCce
Confidence 588999999999999999999999999888654 777778777654 478999999
Q ss_pred CccEEEEECCCCcE
Q 008336 437 GIPMLVAIGPSGRT 450 (569)
Q Consensus 437 ~~Pt~~lid~~G~i 450 (569)
++||+++ +++|++
T Consensus 56 ~~Pt~~i-~~~g~~ 68 (85)
T d1fo5a_ 56 AVPTIVI-NGDVEF 68 (85)
T ss_dssp CSSEEEE-TTEEEC
T ss_pred EeeEEEE-ECCcEE
Confidence 9999765 567764
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.37 E-value=7.9e-13 Score=108.68 Aligned_cols=86 Identities=22% Similarity=0.490 Sum_probs=70.0
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.+| ++|+|||+||++|+.+.|.+.++++++.. ++.++.|++|..+ .+++.|+|
T Consensus 23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~d~~~------------------------~l~~~~~v 76 (112)
T d1ep7a_ 23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVA------------------------AVAEAAGI 76 (112)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTTH------------------------HHHHHHTC
T ss_pred cCCeEEEEEEcCCcCCCcccchhhhhhhhcccc--eEEEEEeeccccc------------------------cccccccc
Confidence 578 99999999999999999999999999864 4899999998764 48899999
Q ss_pred CCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHH
Q 008336 116 MGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQE 161 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 161 (569)
+++||++++ ++|+.+.+. .| .+.+++.+++++.
T Consensus 77 ~~~Pt~~~~-~~G~~v~~~-------~G-----~~~~~l~~~i~k~ 109 (112)
T d1ep7a_ 77 TAMPTFHVY-KDGVKADDL-------VG-----ASQDKLKALVAKH 109 (112)
T ss_dssp CBSSEEEEE-ETTEEEEEE-------ES-----CCHHHHHHHHHHH
T ss_pred cCCCEEEEE-ECCEEEEEE-------eC-----cCHHHHHHHHHHH
Confidence 999999999 689877531 11 1456677776553
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.37 E-value=6.7e-13 Score=109.40 Aligned_cols=69 Identities=32% Similarity=0.659 Sum_probs=60.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.+| |||+|||+||++|+.+.|.|.++++++. ++.++.|++|..+ .+++.|+|
T Consensus 25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~d~~~------------------------~l~~~~~I 77 (113)
T d1ti3a_ 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELK------------------------AVAEEWNV 77 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCH------------------------HHHHHHHC
T ss_pred CCCEEEEEEEcCccccchhhhhhhhhhhccCC---CceEEeeeeeccc------------------------cccccCee
Confidence 567 9999999999999999999999999874 4789999998764 48899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
+++||++++ ++|+.+.+
T Consensus 78 ~~~Pt~~~~-k~G~~v~~ 94 (113)
T d1ti3a_ 78 EAMPTFIFL-KDGKLVDK 94 (113)
T ss_dssp SSTTEEEEE-ETTEEEEE
T ss_pred cccceEEEE-ECCEEEEE
Confidence 999999999 68988764
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.37 E-value=8e-13 Score=108.69 Aligned_cols=69 Identities=23% Similarity=0.578 Sum_probs=61.2
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+|||+||++|+.+.|.|.++++++. ++.++.|++|+.+ .+++.|+|
T Consensus 25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~------------------------~l~~~~~V 77 (113)
T d1r26a_ 25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNS------------------------EIVSKCRV 77 (113)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCccchhhceeccccccccc---cccccccccccch------------------------hhHHHccc
Confidence 456 9999999999999999999999999985 4899999999774 48999999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
.++||++++ ++|+.+.+
T Consensus 78 ~~~Pt~~~~-~~G~~v~~ 94 (113)
T d1r26a_ 78 LQLPTFIIA-RSGKMLGH 94 (113)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred cCCCEEEEE-ECCEEEEE
Confidence 999999999 78988753
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.36 E-value=1e-12 Score=108.37 Aligned_cols=69 Identities=28% Similarity=0.641 Sum_probs=60.5
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ +||+|||+||++|+.+.|.|.++++.++ ++.++.|+.+..+ .+++.|+|
T Consensus 27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~---~~~~~~vd~~~~~------------------------~l~~~~~V 79 (114)
T d1xfla_ 27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELK------------------------SVASDWAI 79 (114)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSH------------------------HHHHHTTC
T ss_pred cCCeEEEEEEcCCCCCccccccchhhhccccc---ccceeEEEeeece------------------------eeccccce
Confidence 477 9999999999999999999999999875 4888899888774 48899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
+++||++++ ++|+.+.+
T Consensus 80 ~~~Pt~~~~-~~G~~v~~ 96 (114)
T d1xfla_ 80 QAMPTFMFL-KEGKILDK 96 (114)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred eeeEEEEEE-ECCEEEEE
Confidence 999999999 78988753
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=9.4e-13 Score=106.97 Aligned_cols=69 Identities=23% Similarity=0.538 Sum_probs=60.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.+| ++|+|||+||++|+.+.|.|.++++++. ++.++.|++|..+ .+++.|+|
T Consensus 19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~---~~~~~~vd~d~~~------------------------~~~~~~~V 71 (105)
T d2ifqa1 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQ------------------------DVASECEV 71 (105)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCH------------------------HHHHHTTC
T ss_pred CCCEEEEEEEcCCccchhhhhhhhhhhccccc---cceeeecccccCH------------------------hHHHHcCc
Confidence 467 9999999999999999999999999875 3668889988774 48899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
+++||++++ ++|+.+.+
T Consensus 72 ~~~Pt~~~~-~~G~~v~~ 88 (105)
T d2ifqa1 72 KCMPTFQFF-KKGQKVGE 88 (105)
T ss_dssp CBSSEEEEE-ETTEEEEE
T ss_pred eEEEEEEEE-ECCEEEEE
Confidence 999999999 78988764
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=9e-13 Score=107.23 Aligned_cols=69 Identities=16% Similarity=0.311 Sum_probs=60.9
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.+| ++|+|||+||++|+++.|.|.++++++. ++.++.|++|..+ .+++.|+|
T Consensus 20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~---~~~f~~vd~d~~~------------------------~l~~~~~v 72 (107)
T d1gh2a_ 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQ------------------------GTAATNNI 72 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSH------------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCCCccccchhhhccccccc---cccccccccccch------------------------hhhhhcCc
Confidence 477 9999999999999999999999999875 3788999998774 48899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
.++||++++ ++|+.+.+
T Consensus 73 ~~~Pt~~~~-~~G~~v~~ 89 (107)
T d1gh2a_ 73 SATPTFQFF-RNKVRIDQ 89 (107)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred eeceEEEEE-ECCEEEEE
Confidence 999999999 78988763
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.35 E-value=2.9e-12 Score=104.50 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=58.2
Q ss_pred CCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhc--CCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELS--RQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 34 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~--~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
....++ +++.|||+|||||+++.|.+.+++.+.. ..+.+.++.|+++..+ .++
T Consensus 11 ~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~------------------------~l~ 66 (107)
T d1a8la2 11 RNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP------------------------EWA 66 (107)
T ss_dssp TTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCH------------------------HHH
T ss_pred HhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccccc------------------------ccc
Confidence 445566 6778999999999999999999976543 2235788888877654 488
Q ss_pred HhcCCCCccEEEEECCCCcEEE
Q 008336 111 ELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 111 ~~~~v~~~P~~~lid~~G~i~~ 132 (569)
+.|+|.++||++++ ++|+.+.
T Consensus 67 ~~~~V~~vPTi~i~-~~G~~~~ 87 (107)
T d1a8la2 67 DQYNVMAVPKIVIQ-VNGEDRV 87 (107)
T ss_dssp HHTTCCSSCEEEEE-ETTEEEE
T ss_pred cccccccceEEEEE-eCCeEEE
Confidence 99999999997666 7888765
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=2.6e-13 Score=112.79 Aligned_cols=78 Identities=26% Similarity=0.468 Sum_probs=59.6
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHHH---HHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHH
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILA---EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~---~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (569)
.+++.+|| +||+|||+||++|+.+.|.+. ++.+.+. ++.++.++++.+.+ ...
T Consensus 16 ~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~--------------------~~~ 72 (117)
T d2fwha1 16 ALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA---DTVLLQANVTANDA--------------------QDV 72 (117)
T ss_dssp HHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT---TSEEEEEECTTCCH--------------------HHH
T ss_pred HHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc---ceEEEecccccchh--------------------HHH
Confidence 35566899 999999999999999999984 4444432 46667777654322 124
Q ss_pred HHHHhcCCCCccEEEEECCCCcEEE
Q 008336 108 KLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 108 ~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+++.|+|.++||++++|++|+++.
T Consensus 73 ~l~~~~~v~~~Pt~~~~~~~G~~~~ 97 (117)
T d2fwha1 73 ALLKHLNVLGLPTILFFDGQGQEHP 97 (117)
T ss_dssp HHHHHTTCCSSSEEEEECTTSCBCG
T ss_pred HHHhhhehhhceEEEEEeCCCcEEe
Confidence 6889999999999999999998764
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.1e-13 Score=116.89 Aligned_cols=94 Identities=11% Similarity=0.123 Sum_probs=74.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++|+|.|||+|||+|+.+.|.|.++++++.++ .+.++.|++|.+ .++++.|+|+
T Consensus 36 ~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~--~~~~a~Vd~d~~-----------------------~~la~~~~V~ 90 (132)
T d2hfda1 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY--TWQVAIADLEQS-----------------------EAIGDRFGVF 90 (132)
T ss_dssp EEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTS--CEEEEEECHHHH-----------------------HHHHHHHTCC
T ss_pred CcEEEEEeeCCCChhHHHHHHHHHHHHHHccCC--cceeEEEEecCC-----------------------HHHHHhhccC
Confidence 478999999999999999999999999999765 355666655543 3699999999
Q ss_pred CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCc
Q 008336 437 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 490 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~ 490 (569)
++||++++ ++|+.+.+..| ....++|.+.|+.++....+
T Consensus 91 ~~PT~~~~-~~G~~v~~~~G--------------~~~~~~l~~~i~~ll~~~~e 129 (132)
T d2hfda1 91 RFPATLVF-TGGNYRGVLNG--------------IHPWAELINLMRGLVEPQQE 129 (132)
T ss_dssp SCCEEEEE-ETTEEEEEECC--------------CSCHHHHHHHHHHHHSCSSC
T ss_pred cceeEEEE-EcCcEeeeecC--------------CCCHHHHHHHHHHHhCcccc
Confidence 99999999 89999988432 12345677778877765554
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.32 E-value=1.2e-12 Score=101.76 Aligned_cols=63 Identities=17% Similarity=0.307 Sum_probs=52.6
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcc
Q 008336 360 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP 439 (569)
Q Consensus 360 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P 439 (569)
.++.||++||+||+++.|.|+++++++.++ +.++.+++|.++ +++++|+|+++|
T Consensus 4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~~-----------------------~l~~~~~V~~~P 57 (85)
T d1nhoa_ 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVDR-----------------------EKAIEYGLMAVP 57 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTCG-----------------------GGGGGTCSSCSS
T ss_pred EEEEEECCCCcchHHHHHHHhhhccccccc---ccccccccccch-----------------------hhHHhcCceEeC
Confidence 355699999999999999999999999754 888999888775 489999999999
Q ss_pred EEEEECCCCc
Q 008336 440 MLVAIGPSGR 449 (569)
Q Consensus 440 t~~lid~~G~ 449 (569)
|+++ +..|+
T Consensus 58 t~~~-~~~~~ 66 (85)
T d1nhoa_ 58 AIAI-NGVVR 66 (85)
T ss_dssp EEEE-TTTEE
T ss_pred EEEE-CCcEE
Confidence 9765 44443
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=7.4e-12 Score=109.83 Aligned_cols=113 Identities=20% Similarity=0.383 Sum_probs=87.2
Q ss_pred Cc-eecCCCceeecCCCCCc-EEEEEecCCCH-hhHhhHHHHHHHHHHhcCCC---CEEEEEEeCC---CCHHHHHHHHH
Q 008336 21 DF-LIRSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG---DFEVIFVSGD---EDDEAFKGYFS 91 (569)
Q Consensus 21 df-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~-~C~~~~p~l~~~~~~~~~~g---~~~vv~v~~d---~~~~~~~~~~~ 91 (569)
|| +.+.+|+++++++++|| +||+||++||+ .|...++.+.++.+.+...+ .+.++.++.+ ........+..
T Consensus 2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (160)
T d1wp0a1 2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVK 81 (160)
T ss_dssp CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHH
T ss_pred CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHh
Confidence 68 66889999999999999 99999999997 79999999999999876554 4667777765 35667777777
Q ss_pred hCCCcccccCCc-hhHHHHHHhcCCCC---------------ccEEEEECCCCcEEEc
Q 008336 92 KMPWLAVPFSDS-ETRDKLDELFKVMG---------------IPHLVILDENGKVLSD 133 (569)
Q Consensus 92 ~~~~~~~~~~~~-~~~~~l~~~~~v~~---------------~P~~~lid~~G~i~~~ 133 (569)
.....+..+... .....+...|++.. .++++|||++|+|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~ 139 (160)
T d1wp0a1 82 EFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY 139 (160)
T ss_dssp TTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEE
T ss_pred hcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEE
Confidence 777665554333 33345667777542 3688999999999864
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=1.7e-12 Score=107.98 Aligned_cols=69 Identities=22% Similarity=0.503 Sum_probs=60.1
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.++.+||.||++||++|+++.|.|.++++.++.. ++.|+.|+++... +++++|+|
T Consensus 26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~--~v~~~~vd~~~~~-----------------------~l~~~~~v 80 (119)
T d2b5ea4 26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK--NITLAQIDCTENQ-----------------------DLCMEHNI 80 (119)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT--TCEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCeEEEEEECCccCcccccchhhhhhhhhhccc--ceeeeeeeccchH-----------------------HHHHHhcc
Confidence 3689999999999999999999999999998653 5888889888664 58999999
Q ss_pred CCccEEEEECCCCcE
Q 008336 436 SGIPMLVAIGPSGRT 450 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i 450 (569)
+++||++++ ++|+.
T Consensus 81 ~~~Pti~~f-~~g~~ 94 (119)
T d2b5ea4 81 PGFPSLKIF-KNSDV 94 (119)
T ss_dssp CSSSEEEEE-ETTCT
T ss_pred ccCCeEEEE-ECCEE
Confidence 999999999 66654
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.32 E-value=3.7e-13 Score=111.60 Aligned_cols=74 Identities=12% Similarity=0.214 Sum_probs=54.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++|+|.||++|||+|+.+.|.|.++.+++.+. .+.++.|+.|.+ .++++.|+|
T Consensus 29 ~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~--~~~~~~Vd~d~~-----------------------~~l~~~~~V 83 (119)
T d2es7a1 29 GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQF--DWQVAVADLEQS-----------------------EAIGDRFNV 83 (119)
T ss_dssp CSEEEEECCCSCC----CCHHHHHHHHHHTCTTS--CCEEEEECHHHH-----------------------HHHHHTTTC
T ss_pred CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCC--ceEEEEEECCCC-----------------------HHHHHhcCc
Confidence 3579999999999999999999999999998753 366666655533 369999999
Q ss_pred CCccEEEEECCCCcEEEccc
Q 008336 436 SGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~~ 455 (569)
+++||++++ ++|+.+.+..
T Consensus 84 ~~~Pt~~~~-~~G~~v~~~~ 102 (119)
T d2es7a1 84 RRFPATLVF-TDGKLRGALS 102 (119)
T ss_dssp CSSSEEEEE-SCC----CEE
T ss_pred CcceEEEEE-EcCeEEEEee
Confidence 999999999 7999998853
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.3e-12 Score=110.82 Aligned_cols=69 Identities=10% Similarity=0.280 Sum_probs=61.2
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.+| |+|+|||+||++|+++.|.|.++++++++ .+.++.|++|..+ .+++.|+|
T Consensus 21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~VDvd~~~------------------------~la~~~~I 74 (137)
T d1qgva_ 21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITEVP------------------------DFNKMYEL 74 (137)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCC------------------------TTTTSSCS
T ss_pred CCCEEEEEEECCCCccchhcChHHHHHHHHhhc--cceEEEeeccccc------------------------hhhhhcCe
Confidence 567 99999999999999999999999999974 4899999999774 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++||++++ ++|+.+.
T Consensus 75 ~~~PT~~~f-~~g~~i~ 90 (137)
T d1qgva_ 75 YDPCTVMFF-FRNKHIM 90 (137)
T ss_dssp CSSCEEEEE-ETTEEEE
T ss_pred eeEEEEEEE-eCCcEEE
Confidence 999999999 6777664
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=8e-13 Score=109.68 Aligned_cols=80 Identities=24% Similarity=0.467 Sum_probs=62.5
Q ss_pred cCCCCCc-EEEEEecC-------CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCch
Q 008336 33 LDSLKGK-IGLYFSAS-------WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSE 104 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~-------wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 104 (569)
+.+.+|| |+|+|||+ ||+||+++.|.+.++++.+++ ++.++.|++++.++. . +
T Consensus 16 l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~--~~~~~~vdv~~~~~~----~-------------d 76 (119)
T d1woua_ 16 VEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE--GCVFIYCQVGEKPYW----K-------------D 76 (119)
T ss_dssp HHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT--TEEEEEEECCCHHHH----H-------------C
T ss_pred HHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC--ceEEEEEECCCCccc----c-------------h
Confidence 3456899 99999995 999999999999999988864 499999999854321 0 0
Q ss_pred hHHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 105 TRDKLDELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 105 ~~~~l~~~~~v~~~P~~~lid~~G~i~ 131 (569)
....+++.|+|.++||+++++..+++.
T Consensus 77 ~~~~l~~~~~V~~iPT~i~~~~g~~l~ 103 (119)
T d1woua_ 77 PNNDFRKNLKVTAVPTLLKYGTPQKLV 103 (119)
T ss_dssp TTCHHHHHHCCCSSSEEEETTSSCEEE
T ss_pred hhhhHHHhCCeEEEEEEEEEECCeEEe
Confidence 113688999999999999996555443
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.31 E-value=2.2e-12 Score=105.94 Aligned_cols=70 Identities=21% Similarity=0.516 Sum_probs=59.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.++++++. ++.++.|+++... ..+++.|+|
T Consensus 24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~---~v~~~~vd~~~~~-----------------------~~l~~~~~V 77 (112)
T d1f9ma_ 24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQEN-----------------------KTLAKELGI 77 (112)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTT-----------------------HHHHHHHCC
T ss_pred CCCEEEEEEEcCCCcchHHHHHHHhhhccccc---cceeecccccccc-----------------------hhhHhheee
Confidence 346 9999999999999999999999999985 3778888887431 258999999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
+++||++++ ++|+.+.+
T Consensus 78 ~~~Pt~~~~-k~G~~v~~ 94 (112)
T d1f9ma_ 78 RVVPTFKIL-KENSVVGE 94 (112)
T ss_dssp SSSSEEEEE-ETTEEEEE
T ss_pred ccCCEEEEE-ECCEEEEE
Confidence 999999999 78988763
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.31 E-value=6e-13 Score=103.69 Aligned_cols=65 Identities=23% Similarity=0.411 Sum_probs=53.7
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
+| .+++|||+||+||+.+.|.+.++++.+.. .+.++.++.|..+ .++++|+|+
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~~~~d~~~------------------------~la~~~~V~ 55 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENP------------------------QKAMEYGIM 55 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSS--SEEEEEEESSSSC------------------------CTTTSTTTC
T ss_pred CceEEEEEECCCCcChHhhhhhcccccccccc--ccccccccccccc------------------------cccccCCce
Confidence 57 78899999999999999999999998764 3778888887653 478899999
Q ss_pred CccEEEEECCCCc
Q 008336 117 GIPHLVILDENGK 129 (569)
Q Consensus 117 ~~P~~~lid~~G~ 129 (569)
++||+++ +++|+
T Consensus 56 ~~Pt~~i-~~~g~ 67 (85)
T d1fo5a_ 56 AVPTIVI-NGDVE 67 (85)
T ss_dssp CSSEEEE-TTEEE
T ss_pred EeeEEEE-ECCcE
Confidence 9999754 56664
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.30 E-value=3.3e-12 Score=103.32 Aligned_cols=69 Identities=26% Similarity=0.567 Sum_probs=60.0
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+|||+||++|+.+.|.+.++++++. +..++.+++|..+ .+++.|+|
T Consensus 17 ~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~---~~~~~~vd~d~~~------------------------~~~~~~~V 69 (103)
T d1syra_ 17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEVS------------------------EVTEKENI 69 (103)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTTH------------------------HHHHHTTC
T ss_pred CCCcEEEEEeCCcccCcccccccchhhhhccc---ceEEEeeccccCc------------------------ceeeeeee
Confidence 357 9999999999999999999999999985 3678889998774 48899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
.++||++++ ++|+.+.+
T Consensus 70 ~~~Pt~i~~-k~G~~v~~ 86 (103)
T d1syra_ 70 TSMPTFKVY-KNGSSVDT 86 (103)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred ecceEEEEE-ECCEEEEE
Confidence 999999999 68988753
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=3.7e-12 Score=105.92 Aligned_cols=89 Identities=25% Similarity=0.446 Sum_probs=68.4
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ +||.||++||++|+++.|.+.++++.+... ++.|+.|+++... .++.+|+|
T Consensus 26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~-~v~~~~vd~~~~~------------------------~l~~~~~v 80 (119)
T d2b5ea4 26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-NITLAQIDCTENQ------------------------DLCMEHNI 80 (119)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-TCEEEEEETTTCH------------------------HHHHHTTC
T ss_pred cCCeEEEEEECCccCcccccchhhhhhhhhhccc-ceeeeeeeccchH------------------------HHHHHhcc
Confidence 456 999999999999999999999999998765 4899999998764 48999999
Q ss_pred CCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHH
Q 008336 116 MGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (569)
.++||++++ ++|+.... + .|. .+.+.+.+.+++++
T Consensus 81 ~~~Pti~~f-~~g~~~~~-----~-~y~---g~~~~~~l~~fi~k 115 (119)
T d2b5ea4 81 PGFPSLKIF-KNSDVNNS-----I-DYE---GPRTAEAIVQFMIK 115 (119)
T ss_dssp CSSSEEEEE-ETTCTTCE-----E-ECC---SCCSHHHHHHHHHH
T ss_pred ccCCeEEEE-ECCEEeee-----E-Eec---CCCCHHHHHHHHHH
Confidence 999999999 66643211 1 111 14566666666643
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.30 E-value=3.6e-12 Score=105.29 Aligned_cols=76 Identities=20% Similarity=0.399 Sum_probs=60.5
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++|||+|+++.|.|.++.++++. .+.+++++...+ .+....+++.|+|.
T Consensus 26 ~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~-----~v~~v~~~~~~~-----------------~~~~~~~~~~~~V~ 83 (115)
T d1zmaa1 26 KETATFFIGRKTCPYCRKFAGTLSGVVAETKA-----HIYFINSEEPSQ-----------------LNDLQAFRSRYGIP 83 (115)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-----CCEEEETTCGGG-----------------HHHHHHHHHHHTCC
T ss_pred CCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh-----hhhhheeecccc-----------------cccccccccccccc
Confidence 78999999999999999999999999888753 456667764322 01234688899999
Q ss_pred CccEEEEECCCCcEEEccc
Q 008336 437 GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~ 455 (569)
++||++++ ++|+++.+..
T Consensus 84 ~~PTli~~-~~gk~~~~~~ 101 (115)
T d1zmaa1 84 TVPGFVHI-TDGQINVRCD 101 (115)
T ss_dssp SSCEEEEE-ETTEEEEECC
T ss_pred cccEEEEE-ECCEEEEEEc
Confidence 99999999 6899888753
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.29 E-value=1.5e-11 Score=108.53 Aligned_cols=138 Identities=18% Similarity=0.282 Sum_probs=88.5
Q ss_pred cccee-cCCCCceecccCCCCEEEEEEecCCChh-HHhhhHHHHHHHHHHhhc-CCCeEEEEEeCCCC---hhHHHHHHh
Q 008336 339 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKER-NESLEVVFISSDRD---QTSFDEFFK 412 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~-~~~~~vv~is~d~~---~~~~~~~~~ 412 (569)
.||.+ |.+|+++++++++||++||+||.+||+. |......+..+.+.+... ...+.++.++.+.. .+....+..
T Consensus 7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (169)
T d2b7ka1 7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS 86 (169)
T ss_dssp CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhc
Confidence 47988 9999999999999999999999999975 777777777777666543 23466777766543 233333333
Q ss_pred cC--CCcccccCchhhHHHH----------------HhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHH
Q 008336 413 GM--PWLALPFGDARKASLS----------------RKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERM 474 (569)
Q Consensus 413 ~~--~~~~~~~~~d~~~~l~----------------~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~ 474 (569)
.. .|............+. ..+.+...|++||||++|+++.+.... . -.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~--------~--~~~~~~ 156 (169)
T d2b7ka1 87 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRN--------Y--DEKTGV 156 (169)
T ss_dssp TSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTT--------C--CTTHHH
T ss_pred cccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCC--------C--CHHHHH
Confidence 22 2222222222222222 234566789999999999999874321 0 123445
Q ss_pred HHHHHHhhhhhc
Q 008336 475 KEIDGQYNEMAK 486 (569)
Q Consensus 475 ~~l~~~l~~l~~ 486 (569)
++|.+.|++++.
T Consensus 157 ~~I~e~ik~ll~ 168 (169)
T d2b7ka1 157 DKIVEHVKSYVP 168 (169)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhC
Confidence 667777777764
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=4.4e-13 Score=111.93 Aligned_cols=70 Identities=26% Similarity=0.561 Sum_probs=59.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|++||.||++||++|+.+.|.+.++.+.++..+..+.++.|+++... .++..|+|+
T Consensus 24 ~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------------------~l~~~~~i~ 80 (120)
T d1meka_ 24 HKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES-----------------------DLAQQYGVR 80 (120)
T ss_dssp CSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC-----------------------SSHHHHTCC
T ss_pred CCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccch-----------------------hHHHHhCCc
Confidence 789999999999999999999999999999765455777777777553 478899999
Q ss_pred CccEEEEECCCCcE
Q 008336 437 GIPMLVAIGPSGRT 450 (569)
Q Consensus 437 ~~Pt~~lid~~G~i 450 (569)
++||++++ ++|+.
T Consensus 81 ~~Pt~~~~-~~G~~ 93 (120)
T d1meka_ 81 GYPTIKFF-RNGDT 93 (120)
T ss_dssp SSSEEEEE-ESSCS
T ss_pred cCCeEEEE-ECCeE
Confidence 99999999 55644
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.27 E-value=9.3e-12 Score=98.92 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=58.6
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
++.+...++.|+++|||+|+.+.|.|++++.... ++.+..|+.+..+ +++..|
T Consensus 12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~----~i~~~~vd~~~~~-----------------------~l~~~~ 64 (96)
T d1hyua4 12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP----RIKHTAIDGGTFQ-----------------------NEITER 64 (96)
T ss_dssp HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT----TEEEEEEETTTCH-----------------------HHHHHT
T ss_pred hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC----ceEEEEEecccch-----------------------HHHhhc
Confidence 3457788999999999999999999999877643 4888888888775 489999
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 434 KVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~ 453 (569)
+|+++||+++ +|+.++.
T Consensus 65 ~I~~vPt~~~---ng~~~~~ 81 (96)
T d1hyua4 65 NVMGVPAVFV---NGKEFGQ 81 (96)
T ss_dssp TCCSSSEEEE---TTEEEEE
T ss_pred ccccccEEEE---CCEEEEe
Confidence 9999999865 7887765
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.24 E-value=4.6e-12 Score=98.42 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=51.3
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
+..|||+||+||+++.|.+.++++++.+ ++.++.+++|.++ .++++|+|+++||
T Consensus 5 v~~F~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~d~~~------------------------~l~~~~~V~~~Pt 58 (85)
T d1nhoa_ 5 IEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDR------------------------EKAIEYGLMAVPA 58 (85)
T ss_dssp EEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEEECTTTCG------------------------GGGGGTCSSCSSE
T ss_pred EEEEECCCCcchHHHHHHHhhhcccccc--cccccccccccch------------------------hhHHhcCceEeCE
Confidence 4569999999999999999999999975 4889999998764 4889999999998
Q ss_pred EEEECCCC
Q 008336 121 LVILDENG 128 (569)
Q Consensus 121 ~~lid~~G 128 (569)
+++ +..|
T Consensus 59 ~~~-~~~~ 65 (85)
T d1nhoa_ 59 IAI-NGVV 65 (85)
T ss_dssp EEE-TTTE
T ss_pred EEE-CCcE
Confidence 755 4443
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.23 E-value=1.8e-12 Score=111.30 Aligned_cols=69 Identities=22% Similarity=0.500 Sum_probs=55.7
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++|||.||++||++|+++.|.|.++++.+++.. ..|.++.+|.+. .+++.|+|+
T Consensus 30 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~--~~v~~~~~d~~~-----------------------~~~~~~~v~ 84 (140)
T d2b5ea1 30 KKDVLVLYYAPWCGHCKRLAPTYQELADTYANAT--SDVLIAKLDHTE-----------------------NDVRGVVIE 84 (140)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHC--SSCEEEEEEGGG-----------------------CCCSSCCCS
T ss_pred CCCEEEEEEeccCcccchhHHHHHHHHHHHhccc--cceEEEeeeccc-----------------------hhccccccc
Confidence 6899999999999999999999999999998653 344555555443 257889999
Q ss_pred CccEEEEECCCCcEE
Q 008336 437 GIPMLVAIGPSGRTI 451 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~ 451 (569)
++||++++ ++|+..
T Consensus 85 ~~Ptl~~f-~~g~~~ 98 (140)
T d2b5ea1 85 GYPTIVLY-PGGKKS 98 (140)
T ss_dssp SSSEEEEE-CCTTSC
T ss_pred cCCeEEEE-ECCEEc
Confidence 99999999 566543
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.21 E-value=2e-11 Score=100.69 Aligned_cols=74 Identities=16% Similarity=0.400 Sum_probs=56.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++|||+|+++.|.|.+++++++. .+..++++.... .+....+.+.|+|
T Consensus 25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~----~v~~v~~~~~~~------------------~~~~~~~~~~~~V 82 (115)
T d1zmaa1 25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA----HIYFINSEEPSQ------------------LNDLQAFRSRYGI 82 (115)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC----CCEEEETTCGGG------------------HHHHHHHHHHHTC
T ss_pred cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh----hhhhheeecccc------------------ccccccccccccc
Confidence 466 99999999999999999999999998853 245566663211 1112357889999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
.++||++++ ++|+++.+
T Consensus 83 ~~~PTli~~-~~gk~~~~ 99 (115)
T d1zmaa1 83 PTVPGFVHI-TDGQINVR 99 (115)
T ss_dssp CSSCEEEEE-ETTEEEEE
T ss_pred ccccEEEEE-ECCEEEEE
Confidence 999999999 58887753
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=4.2e-12 Score=105.81 Aligned_cols=68 Identities=28% Similarity=0.610 Sum_probs=57.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
.+| +||.|||+||++|+++.|.+.++++.+...+ ++.++.|+++... .++..|+
T Consensus 23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------------~l~~~~~ 78 (120)
T d1meka_ 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES------------------------DLAQQYG 78 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC------------------------SSHHHHT
T ss_pred cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccch------------------------hHHHHhC
Confidence 467 9999999999999999999999999997654 5778888887552 4888999
Q ss_pred CCCccEEEEECCCCc
Q 008336 115 VMGIPHLVILDENGK 129 (569)
Q Consensus 115 v~~~P~~~lid~~G~ 129 (569)
|.++||++++ ++|+
T Consensus 79 i~~~Pt~~~~-~~G~ 92 (120)
T d1meka_ 79 VRGYPTIKFF-RNGD 92 (120)
T ss_dssp CCSSSEEEEE-ESSC
T ss_pred CccCCeEEEE-ECCe
Confidence 9999999998 4553
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.18 E-value=1.5e-10 Score=101.95 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=75.6
Q ss_pred cCcc--CCc-eecCCCceeecCCCCCc-EEEEEecCCCH-hhHhhHHHHHHHHHHhcCCC--CEEEEEEeCCC---CHHH
Q 008336 16 SSSA--RDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG--DFEVIFVSGDE---DDEA 85 (569)
Q Consensus 16 g~~~--pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~-~C~~~~p~l~~~~~~~~~~g--~~~vv~v~~d~---~~~~ 85 (569)
|.|+ +|| +.+.+|+++++++++|| +||+||.+||+ .|......+..+...+.... .+.+..++.+. ..+.
T Consensus 1 g~p~~g~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T d2b7ka1 1 GKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAV 80 (169)
T ss_dssp CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHH
T ss_pred CCCCcCCCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhh
Confidence 4445 689 66899999999999999 99999999997 67766666666655554322 36666666653 3444
Q ss_pred HHHHHHhCCCcccccC-CchhHHHHHH----------------hcCCCCccEEEEECCCCcEEEc
Q 008336 86 FKGYFSKMPWLAVPFS-DSETRDKLDE----------------LFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~~~~~~~~~~~~-~~~~~~~l~~----------------~~~v~~~P~~~lid~~G~i~~~ 133 (569)
...+............ .......... .|.+.+.|+++|||++|+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~ 145 (169)
T d2b7ka1 81 LKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA 145 (169)
T ss_dssp HHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred hhhhhccccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEE
Confidence 4444444433222221 1111122222 3446678999999999999864
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.18 E-value=3.3e-11 Score=95.68 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=57.8
Q ss_pred CCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 34 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
.++.|. .++.|+++|||||+.+.|.+.+++..+. ++.+..|+++..+ .++..
T Consensus 11 k~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~---~i~~~~vd~~~~~------------------------~l~~~ 63 (96)
T d1hyua4 11 RDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP---RIKHTAIDGGTFQ------------------------NEITE 63 (96)
T ss_dssp HHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT---TEEEEEEETTTCH------------------------HHHHH
T ss_pred HhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC---ceEEEEEecccch------------------------HHHhh
Confidence 355677 8888999999999999999999987643 5999999999875 48899
Q ss_pred cCCCCccEEEEECCCCcEEE
Q 008336 113 FKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i~~ 132 (569)
|+|+++||+++ +|+.+.
T Consensus 64 ~~I~~vPt~~~---ng~~~~ 80 (96)
T d1hyua4 64 RNVMGVPAVFV---NGKEFG 80 (96)
T ss_dssp TTCCSSSEEEE---TTEEEE
T ss_pred cccccccEEEE---CCEEEE
Confidence 99999999755 677664
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.16 E-value=5.7e-12 Score=104.29 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=52.7
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
..+ |+|.|||+|||+|+.+.|.|.++.+++.+. ++.++.|++|.+ ..+++.|+|
T Consensus 29 ~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~-~~~~~~Vd~d~~------------------------~~l~~~~~V 83 (119)
T d2es7a1 29 GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQF-DWQVAVADLEQS------------------------EAIGDRFNV 83 (119)
T ss_dssp CSEEEEECCCSCC----CCHHHHHHHHHHTCTTS-CCEEEEECHHHH------------------------HHHHHTTTC
T ss_pred CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCC-ceEEEEEECCCC------------------------HHHHHhcCc
Confidence 445 889999999999999999999999998754 477777766633 369999999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
+++||++++ ++|+.+.+
T Consensus 84 ~~~Pt~~~~-~~G~~v~~ 100 (119)
T d2es7a1 84 RRFPATLVF-TDGKLRGA 100 (119)
T ss_dssp CSSSEEEEE-SCC----C
T ss_pred CcceEEEEE-EcCeEEEE
Confidence 999999999 78988764
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=6.1e-12 Score=107.19 Aligned_cols=74 Identities=18% Similarity=0.397 Sum_probs=52.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHH-HhcCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS-RKFKV 435 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~-~~~~v 435 (569)
||+|+|+|||+||++|+++.|.+.+..+..+.. .++.+|.|+.+... .+. ..+..
T Consensus 25 ~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~-~~fv~v~vd~~~~~-----------------------~~~~~~~~~ 80 (135)
T d1sena_ 25 GLPLMVIIHKSWCGACKALKPKFAESTEISELS-HNFVMVNLEDEEEP-----------------------KDEDFSPDG 80 (135)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH-TTSEEEEEEGGGSC-----------------------SCGGGCTTC
T ss_pred CCcEEEEEEecCCCCceecchhhhhhHHHHHhc-CCcEEEeCCCCcCH-----------------------HHHHHHhhc
Confidence 899999999999999999999987765544322 24544444433221 122 23355
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
.++|+++++|++|+++...
T Consensus 81 ~~~Pt~~~~d~~G~~~~~~ 99 (135)
T d1sena_ 81 GYIPRILFLDPSGKVHPEI 99 (135)
T ss_dssp SCSSEEEEECTTSCBCTTC
T ss_pred ccceeEEEECCCCeEEEEe
Confidence 6799999999999988763
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=3.5e-12 Score=107.41 Aligned_cols=71 Identities=11% Similarity=0.206 Sum_probs=60.0
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ |+|.|||+|||+|+.+.|.|.++++++.+.. +.++.|++|.+ ..+++.|+|
T Consensus 35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~-~~~a~Vd~d~~------------------------~~la~~~~V 89 (132)
T d2hfda1 35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT-WQVAIADLEQS------------------------EAIGDRFGV 89 (132)
T ss_dssp SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSC-EEEEEECHHHH------------------------HHHHHHHTC
T ss_pred CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCc-ceeEEEEecCC------------------------HHHHHhhcc
Confidence 346 8899999999999999999999999997653 77777776643 469999999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
.++||++++ ++|+.+.+
T Consensus 90 ~~~PT~~~~-~~G~~v~~ 106 (132)
T d2hfda1 90 FRFPATLVF-TGGNYRGV 106 (132)
T ss_dssp CSCCEEEEE-ETTEEEEE
T ss_pred CcceeEEEE-EcCcEeee
Confidence 999999999 78988763
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=99.13 E-value=2.6e-11 Score=100.19 Aligned_cols=77 Identities=22% Similarity=0.427 Sum_probs=55.3
Q ss_pred cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCC--CeEEEEEeCCCChhHHHHHHhcCCCccccc
Q 008336 344 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNE--SLEVVFISSDRDQTSFDEFFKGMPWLALPF 421 (569)
Q Consensus 344 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~--~~~vv~is~d~~~~~~~~~~~~~~~~~~~~ 421 (569)
+.+.+++.+.+ +|++||+||++||++|+++.|.|.++++.+..... .+.+.....+
T Consensus 9 ~~nF~~~v~~~--~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~-------------------- 66 (116)
T d2djja1 9 AKNYNEIVLDD--TKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT-------------------- 66 (116)
T ss_dssp TTTTTTSSSCT--TSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT--------------------
T ss_pred cCCHHHHHhcC--CCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccc--------------------
Confidence 45555554443 78999999999999999999999999999976421 1223223222
Q ss_pred CchhhHHHHHhcCCCCccEEEEECCCCc
Q 008336 422 GDARKASLSRKFKVSGIPMLVAIGPSGR 449 (569)
Q Consensus 422 ~~d~~~~l~~~~~v~~~Pt~~lid~~G~ 449 (569)
..+..++|+++||++++ ++|.
T Consensus 67 ------~~~~~~~v~~~Pti~~f-~~g~ 87 (116)
T d2djja1 67 ------ANDVPDEIQGFPTIKLY-PAGA 87 (116)
T ss_dssp ------TSCCSSCCSSSSEEEEE-CSSC
T ss_pred ------hhhhcccccCCCEEEEE-ECCc
Confidence 13457899999999999 4553
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.10 E-value=1.7e-10 Score=96.03 Aligned_cols=73 Identities=10% Similarity=0.078 Sum_probs=56.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC-
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV- 435 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v- 435 (569)
.+.+||.|||+||++|+. |.+.++++.++....++.+..|.++.... ..+.++++.|+|
T Consensus 19 ~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~------------------~~n~~l~~~~~i~ 78 (122)
T d2c0ga2 19 FPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGE------------------LENKALGDRYKVD 78 (122)
T ss_dssp SSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTT------------------CTTHHHHHHTTCC
T ss_pred CCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEecccccccc------------------ccCHHHHHHhhcc
Confidence 689999999999999994 99999999987665567777787653210 123579999988
Q ss_pred -CCccEEEEECCCCc
Q 008336 436 -SGIPMLVAIGPSGR 449 (569)
Q Consensus 436 -~~~Pt~~lid~~G~ 449 (569)
+++||++++..++.
T Consensus 79 ~~~~PTi~~f~~g~~ 93 (122)
T d2c0ga2 79 DKNFPSIFLFKGNAD 93 (122)
T ss_dssp TTSCCEEEEESSSSS
T ss_pred cCCCCcEEEEeCCcc
Confidence 57999999965443
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.09 E-value=5.3e-11 Score=101.84 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=56.9
Q ss_pred cCCCceeecCC-CCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCC
Q 008336 25 RSNGDQVKLDS-LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (569)
Q Consensus 25 ~~~g~~v~l~~-~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (569)
.++|+.+.--- -.++ |||.|||+||++|+++.|.|.++++.++..+ ..+..+++|.+.
T Consensus 16 ~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~-~~v~~~~~d~~~------------------- 75 (140)
T d2b5ea1 16 QLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANAT-SDVLIAKLDHTE------------------- 75 (140)
T ss_dssp EECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHC-SSCEEEEEEGGG-------------------
T ss_pred EecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccc-cceEEEeeeccc-------------------
Confidence 44555443211 1367 9999999999999999999999999987543 233444444331
Q ss_pred chhHHHHHHhcCCCCccEEEEECCCCcE
Q 008336 103 SETRDKLDELFKVMGIPHLVILDENGKV 130 (569)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~i 130 (569)
.++..|+|.++||++++ ++|+.
T Consensus 76 -----~~~~~~~v~~~Ptl~~f-~~g~~ 97 (140)
T d2b5ea1 76 -----NDVRGVVIEGYPTIVLY-PGGKK 97 (140)
T ss_dssp -----CCCSSCCCSSSSEEEEE-CCTTS
T ss_pred -----hhccccccccCCeEEEE-ECCEE
Confidence 36678999999999999 45643
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.08 E-value=1.8e-10 Score=96.15 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=55.6
Q ss_pred CCc-EEEEEecCCCHhh------HhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHH
Q 008336 37 KGK-IGLYFSASWCGPC------QRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 109 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C------~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (569)
+.+ ++|.||||||+|| ..+.+.+..+++.+... .+.+..|+++.+. .+
T Consensus 27 ~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~-~v~~a~Vd~~~~~------------------------~l 81 (124)
T d1a8ya1 27 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK-GVGFGLVDSEKDA------------------------AV 81 (124)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGG-TEEEEEEETTTSH------------------------HH
T ss_pred hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccC-CeEEEEEEeeccc------------------------ch
Confidence 456 9999999999975 44445555566666554 4999999998774 49
Q ss_pred HHhcCCCCccEEEEECCCCcEEEcCC
Q 008336 110 DELFKVMGIPHLVILDENGKVLSDGG 135 (569)
Q Consensus 110 ~~~~~v~~~P~~~lid~~G~i~~~~~ 135 (569)
++.|+|+++||++++ ++|+.+.+.|
T Consensus 82 ~~~~~I~~yPTi~~f-~~g~~~~y~G 106 (124)
T d1a8ya1 82 AKKLGLTEEDSIYVF-KEDEVIEYDG 106 (124)
T ss_dssp HHTTTCCSTTCEEEE-ESSSEEECCS
T ss_pred hhccccccCCcEEEe-ccCccEEeeC
Confidence 999999999999999 5677765433
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.06 E-value=3e-10 Score=94.77 Aligned_cols=89 Identities=9% Similarity=0.073 Sum_probs=61.9
Q ss_pred CCEEEEEEecCCChhH------HhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHH
Q 008336 357 GKTILLYFSAHWCPPC------RAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS 430 (569)
Q Consensus 357 gk~vll~F~a~wC~~C------~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ 430 (569)
++.++|.||++||++| ..+.+.+..+++.+... ++.+..|+++.++ .++
T Consensus 28 ~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~--~v~~a~Vd~~~~~-----------------------~l~ 82 (124)
T d1a8ya1 28 YEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK--GVGFGLVDSEKDA-----------------------AVA 82 (124)
T ss_dssp CSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGG--TEEEEEEETTTSH-----------------------HHH
T ss_pred CCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccC--CeEEEEEEeeccc-----------------------chh
Confidence 6789999999999964 33444444444444433 5788888877665 589
Q ss_pred HhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhc
Q 008336 431 RKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 486 (569)
Q Consensus 431 ~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~ 486 (569)
+.|+|+++||++++ ++|+++...| .+..+.|.+.|.+++.
T Consensus 83 ~~~~I~~yPTi~~f-~~g~~~~y~G---------------~r~~~~l~~fi~~~l~ 122 (124)
T d1a8ya1 83 KKLGLTEEDSIYVF-KEDEVIEYDG---------------EFSADTLVEFLLDVLE 122 (124)
T ss_dssp HTTTCCSTTCEEEE-ESSSEEECCS---------------CCSHHHHHHHHHHHHS
T ss_pred hccccccCCcEEEe-ccCccEEeeC---------------CCCHHHHHHHHHHhcC
Confidence 99999999999999 5677664322 2344556666666554
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=99.05 E-value=5.5e-11 Score=98.19 Aligned_cols=64 Identities=22% Similarity=0.418 Sum_probs=48.9
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCC---EEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGD---FEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~---~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
.++ +||+|||+||++|+++.|.+.++++.+..... +.+.....+ .++..
T Consensus 19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~ 71 (116)
T d2djja1 19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT---------------------------ANDVP 71 (116)
T ss_dssp TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT---------------------------TSCCS
T ss_pred CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccc---------------------------hhhhc
Confidence 467 99999999999999999999999999976542 233333322 23456
Q ss_pred cCCCCccEEEEECCCC
Q 008336 113 FKVMGIPHLVILDENG 128 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G 128 (569)
++|+++||++++ ++|
T Consensus 72 ~~v~~~Pti~~f-~~g 86 (116)
T d2djja1 72 DEIQGFPTIKLY-PAG 86 (116)
T ss_dssp SCCSSSSEEEEE-CSS
T ss_pred ccccCCCEEEEE-ECC
Confidence 899999999999 444
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.05 E-value=1.2e-12 Score=115.95 Aligned_cols=75 Identities=21% Similarity=0.366 Sum_probs=58.6
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 352 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 352 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
+.+++++.++|.||++|||+|++++|.|.++++.++ ++.+..|+.|.+++ ..+
T Consensus 49 l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~----~~~~~~i~~d~~~~-----------------------~~~ 101 (166)
T d1z6na1 49 LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP----NIELAIISKGRAED-----------------------DLR 101 (166)
T ss_dssp HHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT----TEEEEEECHHHHHH-----------------------HTT
T ss_pred HHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC----CCcEEEEECccCHH-----------------------HHH
Confidence 456679999999999999999999999999988875 36788887765442 344
Q ss_pred hc---CCCCccEEEEECCCCcEEEc
Q 008336 432 KF---KVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 432 ~~---~v~~~Pt~~lid~~G~i~~~ 453 (569)
.| +...+|.++++|.++....+
T Consensus 102 ~~~~~~~~~~p~~~~~d~~~~~~~~ 126 (166)
T d1z6na1 102 QRLALERIAIPLVLVLDEEFNLLGR 126 (166)
T ss_dssp TTTTCSSCCSSEEEEECTTCCEEEE
T ss_pred HHHHhccccccceeecCccchhccc
Confidence 44 44567888888888877765
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.00 E-value=3.9e-10 Score=93.74 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=63.9
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
+.+ +||.||||||+||+. |++.++++.+.... ++.+..|++++.. ...+..++..|+
T Consensus 18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~-------------------~~~n~~l~~~~~ 76 (122)
T d2c0ga2 18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYG-------------------ELENKALGDRYK 76 (122)
T ss_dssp TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSST-------------------TCTTHHHHHHTT
T ss_pred cCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccc-------------------cccCHHHHHHhh
Confidence 457 999999999999994 99999999886433 6888888876321 011246999998
Q ss_pred C--CCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHH
Q 008336 115 V--MGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160 (569)
Q Consensus 115 v--~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (569)
| .++||++++..++..... ..+ ..+++.+.+.+++++
T Consensus 77 i~~~~~PTi~~f~~g~~~~~~------~~~---~g~rt~~~l~~fv~~ 115 (122)
T d2c0ga2 77 VDDKNFPSIFLFKGNADEYVQ------LPS---HVDVTLDNLKAFVSA 115 (122)
T ss_dssp CCTTSCCEEEEESSSSSSEEE------CCT---TSCCCHHHHHHHHHH
T ss_pred cccCCCCcEEEEeCCcccccc------ccc---CCCCCHHHHHHHHHH
Confidence 8 579999999654322110 111 114566777766644
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=2.8e-10 Score=96.55 Aligned_cols=78 Identities=26% Similarity=0.459 Sum_probs=53.3
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
..+.-.|| +||+|||+||++|+++.|.+.+..+......++.++.|+.+... .+.
T Consensus 19 ~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~------------------------~~~ 74 (135)
T d1sena_ 19 KEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEP------------------------KDE 74 (135)
T ss_dssp HHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSC------------------------SCG
T ss_pred HHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCH------------------------HHH
Confidence 33445789 99999999999999999998765543332224666655544321 122
Q ss_pred H-hcCCCCccEEEEECCCCcEEEc
Q 008336 111 E-LFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 111 ~-~~~v~~~P~~~lid~~G~i~~~ 133 (569)
. .+...++|+++++|++|+++..
T Consensus 75 ~~~~~~~~~Pt~~~~d~~G~~~~~ 98 (135)
T d1sena_ 75 DFSPDGGYIPRILFLDPSGKVHPE 98 (135)
T ss_dssp GGCTTCSCSSEEEEECTTSCBCTT
T ss_pred HHHhhcccceeEEEECCCCeEEEE
Confidence 2 2344578999999999988754
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.3e-09 Score=93.25 Aligned_cols=74 Identities=12% Similarity=0.259 Sum_probs=56.3
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
.+|++||+|+++||++|+.+.... .++.+.+.++ +.++.++.+... ...+++.
T Consensus 41 ~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~---fV~~~v~~~~~e---------------------~~~~~~~ 96 (147)
T d2dlxa1 41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEE---------------------GQRYIQF 96 (147)
T ss_dssp HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHH---------------------HHHHHHH
T ss_pred cCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhh---eeEeeecccchh---------------------hhhhhhh
Confidence 389999999999999999987754 4444445443 777777766432 3468899
Q ss_pred cCCCCccEEEEECC-CCcEEEc
Q 008336 433 FKVSGIPMLVAIGP-SGRTITK 453 (569)
Q Consensus 433 ~~v~~~Pt~~lid~-~G~i~~~ 453 (569)
|+|.++|++++||| +|+++..
T Consensus 97 y~v~~~Pti~~idp~~ge~v~~ 118 (147)
T d2dlxa1 97 YKLGDFPYVSILDPRTGQKLVE 118 (147)
T ss_dssp HTCCSSSEEEEECTTTCCCCEE
T ss_pred eecCceeEEEEEeCCCCeEecc
Confidence 99999999999998 4776644
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=2.1e-09 Score=93.86 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=84.3
Q ss_pred cccCccCCcee-c-CCCceeecCCC-CCc-EEEEEe-cCCCHhhH-hhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 14 LLSSSARDFLI-R-SNGDQVKLDSL-KGK-IGLYFS-ASWCGPCQ-RFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 14 ~~g~~~pdf~~-~-~~g~~v~l~~~-~gk-vlv~F~-a~wC~~C~-~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
.+|+.+|+|.+ + .+|+.++++++ +|| ++|+|| +.|+|.|. .+.+.+.+.++.+.+.|...|+.++++ +.....
T Consensus 4 kVGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~-~~~~~~ 82 (161)
T d1hd2a_ 4 KVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVN-DAFVTG 82 (161)
T ss_dssp CTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESS-CHHHHH
T ss_pred CCCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecC-chhhhh
Confidence 37999999944 5 46899999985 889 888888 89999994 588899999999988874456677777 555566
Q ss_pred HHHHhCCCc--ccccCCchhHHHHHHhcCCCC------------ccEEEEECCCCcEEEc
Q 008336 88 GYFSKMPWL--AVPFSDSETRDKLDELFKVMG------------IPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~v~~------------~P~~~lid~~G~i~~~ 133 (569)
++....... ...++|.. ..+++.||+.. .-.+++|+++|+|.+.
T Consensus 83 ~~~~~~~~~~~~~llsD~~--~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~ 140 (161)
T d1hd2a_ 83 EWGRAHKAEGKVRLLADPT--GAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKAL 140 (161)
T ss_dssp HHHHHTTCTTTCEEEECTT--CHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEE
T ss_pred hhhhhcccccccccccCCc--ceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEE
Confidence 676665543 22344443 47889998631 1234555669998763
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.88 E-value=7.1e-10 Score=97.56 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=58.3
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
++.+++++ ++|.||++|||+|++++|.|.++++.++ ++.+..|++|.+.+ ..
T Consensus 48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~---~~~~~~i~~d~~~~------------------------~~ 100 (166)
T d1z6na1 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAED------------------------DL 100 (166)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT---TEEEEEECHHHHHH------------------------HT
T ss_pred HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC---CCcEEEEECccCHH------------------------HH
Confidence 46778899 9999999999999999999999998865 47777787765433 44
Q ss_pred Hhc---CCCCccEEEEECCCCcEEE
Q 008336 111 ELF---KVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 111 ~~~---~v~~~P~~~lid~~G~i~~ 132 (569)
..| +...+|.++++|.++....
T Consensus 101 ~~~~~~~~~~~p~~~~~d~~~~~~~ 125 (166)
T d1z6na1 101 RQRLALERIAIPLVLVLDEEFNLLG 125 (166)
T ss_dssp TTTTTCSSCCSSEEEEECTTCCEEE
T ss_pred HHHHHhccccccceeecCccchhcc
Confidence 445 4457788999988887664
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=4.5e-09 Score=91.71 Aligned_cols=116 Identities=15% Similarity=0.212 Sum_probs=87.1
Q ss_pred cCCcccee-c-CCCCceecccC-CCCEEEEEEe-cCCChhHH-hhhHHHHHHHHHHhhcCCCe-EEEEEeCCCChhHHHH
Q 008336 336 SGDLDFVV-G-KNGGKVPVSDL-AGKTILLYFS-AHWCPPCR-AFLPKLIDAYKKIKERNESL-EVVFISSDRDQTSFDE 409 (569)
Q Consensus 336 ~~~~~f~~-~-~~g~~v~l~~~-~gk~vll~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~ 409 (569)
...|+|.+ + .+|++++++++ +||.|||+|| +.|+|.|. .+.+.+.+.++.++++ +. .|+.+++|. ......
T Consensus 7 d~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~--g~~~i~~~s~~~-~~~~~~ 83 (161)
T d1hd2a_ 7 DAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK--GVQVVACLSVND-AFVTGE 83 (161)
T ss_dssp CBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT--TCCEEEEEESSC-HHHHHH
T ss_pred CcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHc--CCeEEEEEecCc-hhhhhh
Confidence 34689987 4 56899999985 8999999999 88999995 5888898888888876 44 456677664 455566
Q ss_pred HHhcCCC-cccccCchhhHHHHHhcCCCC------------ccEEEEECCCCcEEEcc
Q 008336 410 FFKGMPW-LALPFGDARKASLSRKFKVSG------------IPMLVAIGPSGRTITKE 454 (569)
Q Consensus 410 ~~~~~~~-~~~~~~~d~~~~l~~~~~v~~------------~Pt~~lid~~G~i~~~~ 454 (569)
+...... ..++++.|.+.++++.||+.. .-..++|+.+|+|++..
T Consensus 84 ~~~~~~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ 141 (161)
T d1hd2a_ 84 WGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALN 141 (161)
T ss_dssp HHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEE
T ss_pred hhhhcccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEE
Confidence 6655542 568889999999999999731 13345566799998864
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=98.78 E-value=9.4e-09 Score=89.71 Aligned_cols=116 Identities=20% Similarity=0.269 Sum_probs=86.8
Q ss_pred cccCccCCceec-----CCCceeecCCC-CCc-EEEEEe-cCCCHhhH-hhHHHHHHHHHHhcCCCCEEEEEEeCCCCHH
Q 008336 14 LLSSSARDFLIR-----SNGDQVKLDSL-KGK-IGLYFS-ASWCGPCQ-RFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84 (569)
Q Consensus 14 ~~g~~~pdf~~~-----~~g~~v~l~~~-~gk-vlv~F~-a~wC~~C~-~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~ 84 (569)
-+|+.+|||.+. ..+++++++++ +|| |+|+|| +.|+|.|. +..|.+.+..+.+.+++..+|+.|++| +..
T Consensus 5 ~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd-~~~ 83 (162)
T d1tp9a1 5 AVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN-DPF 83 (162)
T ss_dssp CTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESS-CHH
T ss_pred CCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeecc-chh
Confidence 479999999542 34578999885 899 888887 89999995 678888888888887776678889987 677
Q ss_pred HHHHHHHhCCCcc-cc-cCCchhHHHHHHhcCCC-----------CccEEEEECCCCcEEEc
Q 008336 85 AFKGYFSKMPWLA-VP-FSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 85 ~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~ 133 (569)
..++|....+... ++ +.|. ...+.+.|++. ....++||| +|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~lsD~--~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~ 142 (162)
T d1tp9a1 84 VMKAWAKSYPENKHVKFLADG--SATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAA 142 (162)
T ss_dssp HHHHHHHTCTTCSSEEEEECT--TSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEE
T ss_pred hhhhhhhhcccccccccccch--hhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEE
Confidence 7888888776432 33 3333 34688888863 235679998 8988763
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.67 E-value=8.7e-09 Score=94.22 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=66.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
++.+|||.||++||++|+.+.|.|.+++.+|. ++.++.|..+.. .+...|++
T Consensus 119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~----~vkF~ki~~~~~------------------------~~~~~~~i 170 (217)
T d2trcp_ 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP----MVKFCKIRASNT------------------------GAGDRFSS 170 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT----TSEEEEEEHHHH------------------------TCSTTSCG
T ss_pred CCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc----cceEEEEccccc------------------------hhHHhCCC
Confidence 35689999999999999999999999998885 367777765522 13567999
Q ss_pred CCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHH
Q 008336 436 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEID 478 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~ 478 (569)
+++||++++ ++|+++.+-.+- ...|++ -|+...++.++
T Consensus 171 ~~lPtl~~y-k~G~~v~~~vg~--~~~~g~--~~~~~~lE~~L 208 (217)
T d2trcp_ 171 DVLPTLLVY-KGGELISNFISV--AEQFAE--DFFAADVESFL 208 (217)
T ss_dssp GGCSEEEEE-ETTEEEEEETTG--GGGSCS--SCCHHHHHHHH
T ss_pred CCCCeEEEE-ECCEEEEEEECc--cccccc--cCCHHHHHHHH
Confidence 999999999 899999875432 122222 25555555543
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=98.66 E-value=4.7e-08 Score=85.13 Aligned_cols=117 Identities=11% Similarity=0.146 Sum_probs=85.3
Q ss_pred ccCCcccee-cCCC---CceecccC-CCCEEEEEEe-cCCChhHHhhhHHHHHHHHH-HhhcCCCeEEEEEeCCCChhHH
Q 008336 335 VSGDLDFVV-GKNG---GKVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKK-IKERNESLEVVFISSDRDQTSF 407 (569)
Q Consensus 335 ~~~~~~f~~-~~~g---~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~-~~~~~~~~~vv~is~d~~~~~~ 407 (569)
....|+|.+ ...| ++++++++ +||.|||+|| +.+.|.|..++..+...+.. +..+ ..-.++.++++ ++...
T Consensus 4 Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~-~~~~vv~~~s~-d~~~~ 81 (163)
T d1nm3a2 4 GKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY-GVDDILVVSVN-DTFVM 81 (163)
T ss_dssp TSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT-TCCEEEEEESS-CHHHH
T ss_pred CCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhh-cccceeeeecC-CHHHH
Confidence 345689877 4444 57999995 9999999999 88999999988776555433 3332 12345555555 44566
Q ss_pred HHHHhcCCCcccccCchhhHHHHHhcCCC-----------CccEEEEECCCCcEEEcc
Q 008336 408 DEFFKGMPWLALPFGDARKASLSRKFKVS-----------GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 408 ~~~~~~~~~~~~~~~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~ 454 (569)
+++.+.+.-..++++.|....+++.|++. .....+||| +|+|++..
T Consensus 82 ~a~~~~~~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~ 138 (163)
T d1nm3a2 82 NAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMF 138 (163)
T ss_dssp HHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEE
T ss_pred HHHhhhhccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEE
Confidence 67777776678999999999999999862 446789998 99998874
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=3.4e-08 Score=84.22 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=55.1
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHH
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (569)
..+.-++| +||+|+++||++|+.+.+.. .++.+.+.+ ++.++.|+.+.... .
T Consensus 36 ~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~--~fV~~~v~~~~~e~----------------------~ 91 (147)
T d2dlxa1 36 ECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEEG----------------------Q 91 (147)
T ss_dssp HHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHHH----------------------H
T ss_pred HHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh--heeEeeecccchhh----------------------h
Confidence 34445689 99999999999999885543 333333332 47778887764322 4
Q ss_pred HHHHhcCCCCccEEEEECC-CCcEE
Q 008336 108 KLDELFKVMGIPHLVILDE-NGKVL 131 (569)
Q Consensus 108 ~l~~~~~v~~~P~~~lid~-~G~i~ 131 (569)
.+.+.|++.++|+++++|+ +|+++
T Consensus 92 ~~~~~y~v~~~Pti~~idp~~ge~v 116 (147)
T d2dlxa1 92 RYIQFYKLGDFPYVSILDPRTGQKL 116 (147)
T ss_dssp HHHHHHTCCSSSEEEEECTTTCCCC
T ss_pred hhhhheecCceeEEEEEeCCCCeEe
Confidence 6889999999999999996 46654
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=2.9e-08 Score=78.65 Aligned_cols=65 Identities=20% Similarity=0.344 Sum_probs=46.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
.-++|+.|+++||++|+.+.+.|+++...+. +.++.++++.+ .++.+.|+++
T Consensus 15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-----~~~v~vd~~~~-----------------------~~l~~~y~~~ 66 (100)
T d1wjka_ 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-----LQEVDITLPEN-----------------------STWYERYKFD 66 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSSSSE-----EEEEETTSSTT-----------------------HHHHHHSSSS
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHhhhhcc-----eEEEecccccC-----------------------HHHHHHhccc
Confidence 4578899999999999999998877655442 33443333333 3689999987
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 437 GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~ 453 (569)
+|++++ +|+.+..
T Consensus 67 -VPvl~i---dg~~~~~ 79 (100)
T d1wjka_ 67 -IPVFHL---NGQFLMM 79 (100)
T ss_dssp -CSEEEE---SSSEEEE
T ss_pred -CCceee---cCceEEe
Confidence 997654 5666544
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.56 E-value=1.5e-08 Score=92.62 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=66.2
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
++. |+|+||++||++|+.+.|.|.+++.+|. ++.++.|+.+.. .+...|++
T Consensus 119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~---~vkF~ki~~~~~-------------------------~~~~~~~i 170 (217)
T d2trcp_ 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCKIRASNT-------------------------GAGDRFSS 170 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT---TSEEEEEEHHHH-------------------------TCSTTSCG
T ss_pred CCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc---cceEEEEccccc-------------------------hhHHhCCC
Confidence 355 8999999999999999999999999885 477888866521 13467999
Q ss_pred CCccEEEEECCCCcEEEcC-CcceeecccCCCCCccHHHHHHHHH
Q 008336 116 MGIPHLVILDENGKVLSDG-GVEIIREYGVEGYPFTVERIKEMKE 159 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (569)
.++||++++ ++|+++..- |. .+.+. -.++...++.++.
T Consensus 171 ~~lPtl~~y-k~G~~v~~~vg~---~~~~g--~~~~~~~lE~~L~ 209 (217)
T d2trcp_ 171 DVLPTLLVY-KGGELISNFISV---AEQFA--EDFFAADVESFLN 209 (217)
T ss_dssp GGCSEEEEE-ETTEEEEEETTG---GGGSC--SSCCHHHHHHHHH
T ss_pred CCCCeEEEE-ECCEEEEEEECc---ccccc--ccCCHHHHHHHHH
Confidence 999999999 889988742 21 12221 2366777777664
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=98.55 E-value=1.4e-07 Score=81.95 Aligned_cols=115 Identities=17% Similarity=0.252 Sum_probs=88.5
Q ss_pred CCcccee-----cCCCCceeccc-CCCCEEEEEEe-cCCChhHH-hhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHH
Q 008336 337 GDLDFVV-----GKNGGKVPVSD-LAGKTILLYFS-AHWCPPCR-AFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 408 (569)
Q Consensus 337 ~~~~f~~-----~~~g~~v~l~~-~~gk~vll~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~ 408 (569)
..|+|.+ +..++++++++ ++||.|||+|| +.|++.|. +..+......+.++.+ ...+|+.||+|. .....
T Consensus 9 ~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~-g~~~v~~isvd~-~~~~~ 86 (162)
T d1tp9a1 9 VLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK-GVTEILCISVND-PFVMK 86 (162)
T ss_dssp BCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT-TCCCEEEEESSC-HHHHH
T ss_pred CCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHc-CCcceeeeeccc-hhhhh
Confidence 4588875 34457899988 48999999999 88999996 5677777777777664 235788899874 46777
Q ss_pred HHHhcCCC-cccccCchhhHHHHHhcCCC-----------CccEEEEECCCCcEEEcc
Q 008336 409 EFFKGMPW-LALPFGDARKASLSRKFKVS-----------GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 409 ~~~~~~~~-~~~~~~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~ 454 (569)
+|....+. ..++++.|+..++++.|++. ....++||| +|+|++..
T Consensus 87 ~~~~~~~~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~ 143 (162)
T d1tp9a1 87 AWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN 143 (162)
T ss_dssp HHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred hhhhhcccccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEE
Confidence 88777763 56888999999999999963 135688998 89998874
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.45 E-value=1.6e-07 Score=74.31 Aligned_cols=60 Identities=20% Similarity=0.353 Sum_probs=44.4
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
+|+.||++||++|....+.|.++..++. +.++.++.+.+ ..+.++|+++ +|
T Consensus 18 ~i~lft~~~C~~C~~a~~~L~~~~~~~~----~~~v~vd~~~~------------------------~~l~~~y~~~-VP 68 (100)
T d1wjka_ 18 VLTLFTKAPCPLCDEAKEVLQPYKDRFI----LQEVDITLPEN------------------------STWYERYKFD-IP 68 (100)
T ss_dssp EEEEEECSSCHHHHHHHHHTSTTSSSSE----EEEEETTSSTT------------------------HHHHHHSSSS-CS
T ss_pred EEEEEECCCCCChHHHHHHHHHhhhhcc----eEEEecccccC------------------------HHHHHHhccc-CC
Confidence 8899999999999999999888865543 44555444444 3588999987 99
Q ss_pred EEEEECCCCcEE
Q 008336 120 HLVILDENGKVL 131 (569)
Q Consensus 120 ~~~lid~~G~i~ 131 (569)
++++ +|+.+
T Consensus 69 vl~i---dg~~~ 77 (100)
T d1wjka_ 69 VFHL---NGQFL 77 (100)
T ss_dssp EEEE---SSSEE
T ss_pred ceee---cCceE
Confidence 7654 46554
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.42 E-value=5e-07 Score=74.34 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=59.0
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeC---CCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG---DEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
+++ +||.|+++||.+|.. |.+.++++.+.+..+..+..|.+ |.+.. ..++..
T Consensus 20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n----------------------~~l~~~ 75 (122)
T d1g7ea_ 20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLN----------------------MELSEK 75 (122)
T ss_dssp GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHH----------------------HHHHHH
T ss_pred hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeecccccc----------------------HHHHHh
Confidence 467 999999999988864 89999999998765554444543 33332 467777
Q ss_pred cC--CCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHH
Q 008336 113 FK--VMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKE 159 (569)
Q Consensus 113 ~~--v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (569)
|+ |.++||++++ ++|.... . ..|.. +++.+.+.++++
T Consensus 76 ~~~~I~~yPTi~~f-~~G~~~~-----~-~~y~G---~rt~~~l~~fi~ 114 (122)
T d1g7ea_ 76 YKLDKESYPVFYLF-RDGDFEN-----P-VPYSG---AVKVGAIQRWLK 114 (122)
T ss_dssp HTCSSSSCEEEEEE-ESSCCCC-----C-EEEES---CCCHHHHHHHHH
T ss_pred hcccccCCCeEEEE-ecCcccC-----c-eecCC---CCCHHHHHHHHH
Confidence 64 7899999999 5553211 0 11211 456777766664
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=98.41 E-value=2.3e-07 Score=80.59 Aligned_cols=117 Identities=14% Similarity=0.158 Sum_probs=77.2
Q ss_pred ccccCccCCceec-CCC---ceeecCCC-CCc-EEEEEe-cCCCHhhHhhHHHHHHHH-HHhcCCCCEEEEEEeCCCCHH
Q 008336 13 SLLSSSARDFLIR-SNG---DQVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVY-NELSRQGDFEVIFVSGDEDDE 84 (569)
Q Consensus 13 ~~~g~~~pdf~~~-~~g---~~v~l~~~-~gk-vlv~F~-a~wC~~C~~~~p~l~~~~-~~~~~~g~~~vv~v~~d~~~~ 84 (569)
++.|+.+|||.+. ..| +.++++++ +|| |+|+|| +.+.|.|..++..+.... +.+..++.-.++.++.+ +..
T Consensus 1 ~~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~-d~~ 79 (163)
T d1nm3a2 1 SMEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVN-DTF 79 (163)
T ss_dssp CCTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESS-CHH
T ss_pred CCCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecC-CHH
Confidence 4789999999554 334 57999996 899 877776 899999999876655443 33333332345555555 455
Q ss_pred HHHHHHHhCCCcccc-cCCchhHHHHHHhcCC-----------CCccEEEEECCCCcEEEc
Q 008336 85 AFKGYFSKMPWLAVP-FSDSETRDKLDELFKV-----------MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 85 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~v-----------~~~P~~~lid~~G~i~~~ 133 (569)
...++.+..+...++ +.|.. ..+++.|++ .....++|+| +|+|+..
T Consensus 80 ~~~a~~~~~~~~~~~llsD~~--~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~ 137 (163)
T d1nm3a2 80 VMNAWKEDEKSENISFIPDGN--GEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKM 137 (163)
T ss_dssp HHHHHHHHTTCTTSEEEECTT--SHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEE
T ss_pred HHHHHhhhhccCceeeeccCC--hHHHHHhhhhccccccccccccceEEEEEe-CCEEEEE
Confidence 666666666544444 34443 357777775 2456789998 8988763
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.12 E-value=1.7e-06 Score=71.01 Aligned_cols=104 Identities=9% Similarity=0.079 Sum_probs=65.8
Q ss_pred ecCCCceeeeccccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCce--EEEEeeccccHHHHHHHhcCCCccccc
Q 008336 183 ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESF--EIVLISLDDEEESFKRDLGSMPWLALP 260 (569)
Q Consensus 183 ~~~~~~~~~~~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~--ei~~v~~d~~~~~~~~~~~~~~~~~~~ 260 (569)
++++.+++...-.+++.+++.|+++||..|. .|.+.+++..+.+....+ +|.+..+|.+.
T Consensus 7 v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~---------------- 68 (122)
T d1g7ea_ 7 LPLDTVTFYKVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKL---------------- 68 (122)
T ss_dssp CSCSHHHHHHHGGGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCH----------------
T ss_pred EECCHHhHHHHHhhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccc----------------
Confidence 3444455544345678999999999998775 488889998887664433 23334445443
Q ss_pred CCchhHHHHHhhcc--cCCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHH
Q 008336 261 FKDKSREKLARYFE--LSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAE 319 (569)
Q Consensus 261 ~~d~~~~~l~~~f~--v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 319 (569)
.+.+++.++ |+++||+.++..+..... +.+-| +.+.+.+.++++
T Consensus 69 -----n~~l~~~~~~~I~~yPTi~~f~~G~~~~~------~~y~G----~rt~~~l~~fi~ 114 (122)
T d1g7ea_ 69 -----NMELSEKYKLDKESYPVFYLFRDGDFENP------VPYSG----AVKVGAIQRWLK 114 (122)
T ss_dssp -----HHHHHHHHTCSSSSCEEEEEEESSCCCCC------EEEES----CCCHHHHHHHHH
T ss_pred -----cHHHHHhhcccccCCCeEEEEecCcccCc------eecCC----CCCHHHHHHHHH
Confidence 567777765 679999999975432110 00111 457777777765
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=0.00019 Score=61.02 Aligned_cols=89 Identities=20% Similarity=0.346 Sum_probs=55.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC--C-ChhH----------------HHHHHhcCC-
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD--R-DQTS----------------FDEFFKGMP- 415 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d--~-~~~~----------------~~~~~~~~~- 415 (569)
.+|.+++.|+.+-||+|+++.|.+.++.+. ++.++++..- . .+.. +........
T Consensus 25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~------~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 98 (156)
T d1eeja1 25 QEKHVITVFTDITCGYCHKLHEQMADYNAL------GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSV 98 (156)
T ss_dssp TCCEEEEEEECTTCHHHHHHHTTHHHHHHT------TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHhhcc------CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhcccc
Confidence 378999999999999999999999876432 3555555431 1 1111 111111111
Q ss_pred -CcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 416 -WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 416 -~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~ 452 (569)
..........+..+++.+||+|+|++|+ .+|+++.
T Consensus 99 ~~~~~~~~i~~~~~la~~lgv~GTPt~~~--~nG~~v~ 134 (156)
T d1eeja1 99 APASCDVDIADHYALGVQLGVSGTPAVVL--SNGTLVP 134 (156)
T ss_dssp CCCCCSCCHHHHHHHHHHHTCCSSSEEEC--TTSCEEE
T ss_pred chhhhcchHHHHHHHHHHcCCcCCCEEEE--eCCeEec
Confidence 1111122345678899999999999765 4687653
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.72 E-value=0.00025 Score=61.15 Aligned_cols=103 Identities=11% Similarity=0.129 Sum_probs=66.1
Q ss_pred CCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC---CCH-------------HHHHHH
Q 008336 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD---EDD-------------EAFKGY 89 (569)
Q Consensus 27 ~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d---~~~-------------~~~~~~ 89 (569)
.+..+....-..+ +|+.|+-+.||+|+++.+.+.++.+. +++.++.+.+. .+. .....+
T Consensus 25 ~~~~i~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~----~~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~ 100 (169)
T d1v58a1 25 QSHWLLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS----GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQ 100 (169)
T ss_dssp TSCCEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT----TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHH
T ss_pred cCCCceeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHhc----cceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHH
Confidence 4455666666677 89999999999999999999887654 45888888653 111 111122
Q ss_pred HHhCCCc---ccc-cCCc------hhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 90 FSKMPWL---AVP-FSDS------ETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~---~~~-~~~~------~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
....... ... .... +.+..+++.+|++++|++++.|++|++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~ 154 (169)
T d1v58a1 101 YEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQA 154 (169)
T ss_dssp HHHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEE
T ss_pred HHHhhhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEe
Confidence 2222111 111 1111 123457788999999999999999977553
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=97.71 E-value=6.1e-06 Score=68.71 Aligned_cols=121 Identities=14% Similarity=0.117 Sum_probs=83.4
Q ss_pred eeecCCCceeeeccccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCccccc
Q 008336 181 FVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALP 260 (569)
Q Consensus 181 ~~~~~~~~~~~~~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~ 260 (569)
++...+.++...+...+++++++|+... ....++...+.+++++++++ ++|+.+|.+.
T Consensus 7 Lv~e~~~~n~~~~~~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~k-----i~Fv~vd~~~---------------- 64 (133)
T d2djka1 7 LIGEIGPETYSDYMSAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGV-----INFGTIDAKA---------------- 64 (133)
T ss_dssp CSEECCHHHHHHHHHTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTT-----SEEEEECTTT----------------
T ss_pred ceeccChhhHHHHhcCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCc-----eEEEEEeHHH----------------
Confidence 3333444444443345667777777654 34577888888999988766 6677776543
Q ss_pred CCchhHHHHHhhcccC--CCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccC
Q 008336 261 FKDKSREKLARYFELS--TLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSG 337 (569)
Q Consensus 261 ~~d~~~~~l~~~f~v~--~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 337 (569)
+.+++++||+. ..|.+++++.++...+... ..-+++.+++..|.....+++..+.++|+.++.
T Consensus 65 -----~~~~l~~~gl~~~~~P~~~i~~~~~~~~~~~~---------~~~~i~~~~i~~Fi~d~~~Gkl~p~~kSe~iPe 129 (133)
T d2djka1 65 -----FGAHAGNLNLKTDKFPAFAIQEVAKNQKFPFD---------QEKEITFEAIKAFVDDFVAGKIEPSIKSEPIPE 129 (133)
T ss_dssp -----TGGGTTTTTCCSSSSSEEEEECTTTCCBCCCC---------SSSCCCHHHHHHHHHHHHHTCCCCSSCCCCCCT
T ss_pred -----hHHHHHHhcCCcccCCcEEEEEcCCCceecCC---------ccccCCHHHHHHHHHHHHcCCCCcccccCCCCC
Confidence 44667889985 6899999987654432111 012579999999999999999999999876654
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=0.00022 Score=61.52 Aligned_cols=92 Identities=9% Similarity=0.123 Sum_probs=59.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC---C-------------hhH-HHHHHhcCCC---
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---D-------------QTS-FDEFFKGMPW--- 416 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~---~-------------~~~-~~~~~~~~~~--- 416 (569)
.+.+|+.|+.+.||+|+++.+.+.++.+.. ++.++++.... + +.. +..+......
T Consensus 36 a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~-----~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~ 110 (169)
T d1v58a1 36 APVIVYVFADPFCPYCKQFWQQARPWVDSG-----KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKL 110 (169)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHTT-----SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCC
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHhcc-----ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccc
Confidence 578999999999999999999988775543 37777776531 1 111 1111111110
Q ss_pred cccccC-------chhhHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 417 LALPFG-------DARKASLSRKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 417 ~~~~~~-------~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
...... .+.+..+++.+||+++|++|+.|++|++...
T Consensus 111 ~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~ 154 (169)
T d1v58a1 111 NVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQA 154 (169)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEE
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEe
Confidence 111111 1234567888999999999999999987554
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.60 E-value=0.00042 Score=59.66 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=44.8
Q ss_pred CCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 008336 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (569)
Q Consensus 27 ~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d 80 (569)
....+.+.+-.++ .|+.|+...||||+++.+.+.++.+++.+.+.+.++.+...
T Consensus 13 ~~~~~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (172)
T d1z6ma1 13 TETGLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD 67 (172)
T ss_dssp SSSSEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred CCCCCeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeecccc
Confidence 3445667777888 89999999999999999999999999988777777777543
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.58 E-value=0.00017 Score=62.00 Aligned_cols=130 Identities=15% Similarity=0.307 Sum_probs=88.8
Q ss_pred CceecccC-CCCEEEEEEe-cCCChhHHh-hhHHHHHHHHHH-hhcCCCe-EEEEEeCCCChhHHHHHHhcCCCcccccC
Q 008336 348 GKVPVSDL-AGKTILLYFS-AHWCPPCRA-FLPKLIDAYKKI-KERNESL-EVVFISSDRDQTSFDEFFKGMPWLALPFG 422 (569)
Q Consensus 348 ~~v~l~~~-~gk~vll~F~-a~wC~~C~~-~~~~l~~l~~~~-~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~~~~ 422 (569)
++++++++ +||.|+|.+. +..-|.|.. .+|.+.+.++++ +.+ ++ +|+.+++| ++-..++|.+.++.-.+.++
T Consensus 32 ~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~--gvd~I~~iSvn-D~fv~~aW~~~~~~~~I~~l 108 (179)
T d1xiya1 32 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKEN--NFDDIYCITNN-DIYVLKSWFKSMDIKKIKYI 108 (179)
T ss_dssp EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTS--CCSEEEEEESS-CHHHHHHHHHHTTCCSSEEE
T ss_pred eEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhc--CCceEEEEecC-CHHHHHHHHhhcCcceEEEe
Confidence 34556664 7887777666 788999966 699999999998 454 33 78999997 55778888888776567889
Q ss_pred chhhHHHHHhcCCC-----------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhh
Q 008336 423 DARKASLSRKFKVS-----------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 482 (569)
Q Consensus 423 ~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~ 482 (569)
.|.+.++++.+|+. .....++|+ +|+|.+...-.... .....-|+.-+..+.+++.|+
T Consensus 109 sD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~vE~~~~-~~~~~dp~~vSsae~iL~~L~ 177 (179)
T d1xiya1 109 SDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQEKDKQ-HNIQTDPYDISTVNNVKEFLK 177 (179)
T ss_dssp ECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEECSSCC-TTCSSCCCSTTSHHHHHHHHH
T ss_pred eCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEEEeCCCC-CCCCCCCcccCCHHHHHHHHh
Confidence 99999999999863 234578887 89998864211000 001112444455566666654
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=0.00029 Score=59.88 Aligned_cols=96 Identities=19% Similarity=0.315 Sum_probs=58.3
Q ss_pred ceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC---CCHH----------------HHHH
Q 008336 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD---EDDE----------------AFKG 88 (569)
Q Consensus 29 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d---~~~~----------------~~~~ 88 (569)
..+.+..-.+| +++.|.-+-||+|+++.|.+.++.+. ++.++.+..- .... .+..
T Consensus 17 ~~iv~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~-----~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~ 91 (156)
T d1eeja1 17 EMIVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL-----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDD 91 (156)
T ss_dssp GSEEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHH
T ss_pred cceeecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhcc-----CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHH
Confidence 34455555678 99999999999999999999988543 3555555432 1111 1111
Q ss_pred HHHhCCCccccc-CCchhHHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 89 YFSKMPWLAVPF-SDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 89 ~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 131 (569)
............ .....+..+++.+||+|+|++++ .+|+++
T Consensus 92 ~~~~~~~~~~~~~~~i~~~~~la~~lgv~GTPt~~~--~nG~~v 133 (156)
T d1eeja1 92 VMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVL--SNGTLV 133 (156)
T ss_dssp HHTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEEC--TTSCEE
T ss_pred HHhccccchhhhcchHHHHHHHHHHcCCcCCCEEEE--eCCeEe
Confidence 111111111111 12334567899999999999765 367665
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.42 E-value=4.6e-05 Score=62.32 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=76.7
Q ss_pred cccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhc
Q 008336 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (569)
Q Consensus 194 ~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f 273 (569)
...|.+++++|+.+.- ....+.+.+.+++++++++ +.|+.+|.+. +.+.++.|
T Consensus 14 ~~~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkgk-----i~Fv~~D~~~---------------------~~~~l~~f 66 (125)
T d2b5ea3 14 VESGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRGL-----MNFVSIDARK---------------------FGRHAGNL 66 (125)
T ss_dssp HHTTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTTT-----CEEEEEEHHH---------------------HTTHHHHT
T ss_pred HhcCCCEEEEEeCChH-HHHHHHHHHHHHHHHhcCe-----eEEEEEchHH---------------------hHHHHHHc
Confidence 3467788888887653 3567888999999999887 7787777654 45678999
Q ss_pred ccC-CCceEEEECCCC--CchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhh
Q 008336 274 ELS-TLPTLVIIGPDG--KTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEES 327 (569)
Q Consensus 274 ~v~-~~Ptlvi~~~~g--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (569)
|+. ..|.+++++... ++...........+-...-+++.+.+.+|.....+++.+
T Consensus 67 gl~e~~P~~~i~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKlk 123 (125)
T d2b5ea3 67 NMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDAS 123 (125)
T ss_dssp TCCSCSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCC
T ss_pred CCCccCCcEEEEecccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCcC
Confidence 997 589999987543 443333333334444444578999999999988876654
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.33 E-value=0.001 Score=57.02 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=39.6
Q ss_pred eecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC
Q 008336 350 VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401 (569)
Q Consensus 350 v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d 401 (569)
+.+.+-..++.|+.|+...||+|+++.+.+.++.+++.+. ..+.++.+...
T Consensus 17 ~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 67 (172)
T d1z6ma1 17 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKS-GKVERIIKLFD 67 (172)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHT-TSEEEEEEECC
T ss_pred CeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccc-cceeeeecccc
Confidence 3444545688999999999999999999999999988764 24666666553
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.29 E-value=0.0012 Score=55.42 Aligned_cols=87 Identities=17% Similarity=0.283 Sum_probs=52.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC--C-ChhHHH---HHH------------hcCCC--
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD--R-DQTSFD---EFF------------KGMPW-- 416 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d--~-~~~~~~---~~~------------~~~~~-- 416 (569)
+|.+++.|+.+-||+|+++.+.+.++.+. +..++.+... . .+.... ... .....
T Consensus 26 ak~~I~~FsD~~CPyC~~~~~~l~~l~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~ 99 (150)
T d1t3ba1 26 EKHVVTVFMDITCHYCHLLHQQLKEYNDL------GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPK 99 (150)
T ss_dssp CSEEEEEEECTTCHHHHHHHTTHHHHHHT------TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCS
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHhcc------CceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhcccc
Confidence 78899999999999999999999877543 2445444332 1 111111 101 11111
Q ss_pred -cccccCchhhHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 417 -LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 417 -~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~ 451 (569)
....-....+..+++.+||+|+||+|+. +|+++
T Consensus 100 ~~~~~~~i~~~~~la~~lGv~GTPt~~~~--nG~~i 133 (150)
T d1t3ba1 100 EVKTPNIVKKHYELGIQFGVRGTPSIVTS--TGELI 133 (150)
T ss_dssp SCCCSSHHHHHHHHHHHHTCCSSCEEECT--TSCCC
T ss_pred chhhhhHHHHHHHHHHhcCcCCCCEEEEc--CCcEe
Confidence 1111122456678999999999998874 57654
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.27 E-value=0.00064 Score=58.33 Aligned_cols=101 Identities=16% Similarity=0.315 Sum_probs=73.4
Q ss_pred ceeecCCC-CCc-EEEEE-ecCCCHhhHh-hHHHHHHHHHHh-cCCCCEEEEEEeCCCCHHHHHHHHHhCCCccccc-CC
Q 008336 29 DQVKLDSL-KGK-IGLYF-SASWCGPCQR-FTPILAEVYNEL-SRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPF-SD 102 (569)
Q Consensus 29 ~~v~l~~~-~gk-vlv~F-~a~wC~~C~~-~~p~l~~~~~~~-~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~-~~ 102 (569)
..++++++ +|| |+|.+ -+..-|.|.. ++|.+.+.+++| +.+|--+|+.++++ ++-..++|.+..+...+.+ +|
T Consensus 32 ~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd~I~~iSvn-D~fv~~aW~~~~~~~~I~~lsD 110 (179)
T d1xiya1 32 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNN-DIYVLKSWFKSMDIKKIKYISD 110 (179)
T ss_dssp EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESS-CHHHHHHHHHHTTCCSSEEEEC
T ss_pred eEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCceEEEEecC-CHHHHHHHHhhcCcceEEEeeC
Confidence 35677765 888 66655 4778899955 699999999998 56663379999997 7788888888887766553 44
Q ss_pred chhHHHHHHhcCCC-----------CccEEEEECCCCcEEEc
Q 008336 103 SETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 103 ~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~ 133 (569)
.. .++.+.+|+. .....++++ +|+|.+.
T Consensus 111 ~~--g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~ 149 (179)
T d1xiya1 111 GN--SSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKM 149 (179)
T ss_dssp TT--SHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEE
T ss_pred Cc--hHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEE
Confidence 44 4688888752 234568886 7988763
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.12 E-value=0.00062 Score=57.26 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=54.6
Q ss_pred eecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC--C-CHHHH---HHH------------HH
Q 008336 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD--E-DDEAF---KGY------------FS 91 (569)
Q Consensus 31 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d--~-~~~~~---~~~------------~~ 91 (569)
+....-.+| +++.|.-+-||+|+++.+.+.++.+. ++.++.+... . ..... ... ..
T Consensus 19 ~i~g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~ 93 (150)
T d1t3ba1 19 IVYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDL-----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAE 93 (150)
T ss_dssp EEECCTTCSEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHH
T ss_pred eEECCCCCCEEEEEEECCCCHHHHHHhHHHHHHhcc-----CceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHh
Confidence 444555678 89999999999999999999888754 2445444332 1 11111 111 11
Q ss_pred hCCC-cccccC-CchhHHHHHHhcCCCCccEEEEECCCCcE
Q 008336 92 KMPW-LAVPFS-DSETRDKLDELFKVMGIPHLVILDENGKV 130 (569)
Q Consensus 92 ~~~~-~~~~~~-~~~~~~~l~~~~~v~~~P~~~lid~~G~i 130 (569)
.... ...... ....+..+++.+||+|+|++++. +|++
T Consensus 94 ~~~~~~~~~~~~~i~~~~~la~~lGv~GTPt~~~~--nG~~ 132 (150)
T d1t3ba1 94 KGNLPKEVKTPNIVKKHYELGIQFGVRGTPSIVTS--TGEL 132 (150)
T ss_dssp TTCCCSSCCCSSHHHHHHHHHHHHTCCSSCEEECT--TSCC
T ss_pred hhccccchhhhhHHHHHHHHHHhcCcCCCCEEEEc--CCcE
Confidence 1111 111111 12234578899999999988874 5754
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=97.10 E-value=0.00096 Score=57.69 Aligned_cols=42 Identities=17% Similarity=0.397 Sum_probs=34.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 400 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~ 400 (569)
.++++||.|+...||+|+.+.+.+.++.+++.+. ..++...+
T Consensus 17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~---~~~~~~~~ 58 (181)
T d1beda_ 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG---AKFQKNHV 58 (181)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT---CEEEEEEC
T ss_pred CCCCEEEEEECCCCccchhhhhhhhhHhhhcccc---cceeEEec
Confidence 3688999999999999999999999988888654 56665554
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00065 Score=59.82 Aligned_cols=43 Identities=28% Similarity=0.500 Sum_probs=32.3
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHH---HHHHHHhhcCCCeEEEEEeCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLI---DAYKKIKERNESLEVVFISSD 401 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~vv~is~d 401 (569)
.+++.|+.|+.-+||+|.++.|.|. ++.+.+++ ++.++...+.
T Consensus 112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~---~v~~~~~~~~ 157 (195)
T d1un2a_ 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE---GVKMTKYHVN 157 (195)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT---TCCEEEEECS
T ss_pred CCCceEEEEEecCCccccccchhhhHHHHHHhhcCC---CcEEEEEecC
Confidence 3678899999999999999999775 44444543 4777776654
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=96.95 E-value=0.0016 Score=56.14 Aligned_cols=43 Identities=26% Similarity=0.464 Sum_probs=34.1
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~ 79 (569)
.++ ++|.|+...||||+++.+.+.++.+++.+.+.+....+..
T Consensus 17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~ 60 (181)
T d1beda_ 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSF 60 (181)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSS
T ss_pred CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccc
Confidence 467 8899999999999999999999999987654444444433
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=96.88 E-value=0.0024 Score=46.28 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=40.5
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|..+|||+|.+....|.+ .+ +.+..++++.+.+. ....+.+|..++|.
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~-------~~-i~~~~~~i~~~~~~---------------------~~~~~~~g~~tvP~ 53 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDR-------AG-LAYNTVDISLDDEA---------------------RDYVMALGYVQAPV 53 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------TT-CCCEEEETTTCHHH---------------------HHHHHHTTCBCCCE
T ss_pred EEEEeCCCChhHHHHHHHHHH-------cC-CceEEEEccCCHHH---------------------HHHHHHhCCCCcCE
Confidence 466889999999987766543 23 66777788876542 23445678899998
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
+++ +|+.+
T Consensus 54 i~i---~g~~i 61 (74)
T d1r7ha_ 54 VEV---DGEHW 61 (74)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 764 46544
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=96.86 E-value=0.0032 Score=45.57 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=41.1
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|..+|||+|.+....|.+ . ++....+.++.+++. .+..+.++.+.+|.
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~----~-----~i~~~~~~i~~~~~~--------------------~~~~~~~g~~tvP~ 53 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDR----A-----GLAYNTVDISLDDEA--------------------RDYVMALGYVQAPV 53 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHH----T-----TCCCEEEETTTCHHH--------------------HHHHHHTTCBCCCE
T ss_pred EEEEeCCCChhHHHHHHHHHH----c-----CCceEEEEccCCHHH--------------------HHHHHHhCCCCcCE
Confidence 467889999999998876643 2 356666777766532 23446678999998
Q ss_pred EEEECCCCcEEE
Q 008336 441 LVAIGPSGRTIT 452 (569)
Q Consensus 441 ~~lid~~G~i~~ 452 (569)
+++ +|+.+.
T Consensus 54 i~i---~g~~ig 62 (74)
T d1r7ha_ 54 VEV---DGEHWS 62 (74)
T ss_dssp EEE---TTEEEE
T ss_pred EEE---CCEEEe
Confidence 764 566544
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.0019 Score=56.20 Aligned_cols=46 Identities=24% Similarity=0.352 Sum_probs=33.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d 401 (569)
.++++|+.|+...||+|+++.+.+..+.+..+.....+.++.....
T Consensus 17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 62 (188)
T d1fvka_ 17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN 62 (188)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence 4678899999999999999999876655544433334677777654
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0062 Score=44.20 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=39.3
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|..+||++|.+....|.+ . ++....+.++.+++. .+..+..|.+.+|.
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~----~-----~i~y~~~~i~~~~~~--------------------~~~~~~~g~~tvP~ 53 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMEN----R-----GFDFEMINVDRVPEA--------------------AEALRAQGFRQLPV 53 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHH----T-----TCCCEEEETTTCHHH--------------------HHHHHHTTCCSSCE
T ss_pred EEEEeCCCCccHHHHHHHHHh----c-----CceeEEEeecCCHHH--------------------HHHHHhcCCCCCCE
Confidence 456889999999998877643 1 355556677766532 12335568899999
Q ss_pred EEEECCCCcEE
Q 008336 441 LVAIGPSGRTI 451 (569)
Q Consensus 441 ~~lid~~G~i~ 451 (569)
+++ +|..+
T Consensus 54 i~i---~~~~i 61 (76)
T d1h75a_ 54 VIA---GDLSW 61 (76)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 775 45554
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.011 Score=42.75 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=37.2
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|..+|||+|.+....|.+ .+ +....++++.+.+. ....+..|.+.+|.
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~-------~~-i~y~~~~i~~~~~~---------------------~~~~~~~g~~tvP~ 53 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMEN-------RG-FDFEMINVDRVPEA---------------------AEALRAQGFRQLPV 53 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------TT-CCCEEEETTTCHHH---------------------HHHHHHTTCCSSCE
T ss_pred EEEEeCCCCccHHHHHHHHHh-------cC-ceeEEEeecCCHHH---------------------HHHHHhcCCCCCCE
Confidence 456788999999987766644 23 66677788876542 12334568899998
Q ss_pred EEE
Q 008336 121 LVI 123 (569)
Q Consensus 121 ~~l 123 (569)
+++
T Consensus 54 i~i 56 (76)
T d1h75a_ 54 VIA 56 (76)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.54 E-value=0.0071 Score=47.03 Aligned_cols=66 Identities=17% Similarity=0.342 Sum_probs=42.5
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|..+|||+|.+....|.++.-.+ . .+.+.-++.+.+...++.+ +.+..+.+.+|.
T Consensus 14 Vviysk~~Cp~C~~ak~ll~~~~~~~--~-~~~~~e~d~~~d~~~~~~~-------------------l~~~~g~~tvPq 71 (105)
T d1ktea_ 14 VVVFIKPTCPFCRKTQELLSQLPFKE--G-LLEFVDITATSDTNEIQDY-------------------LQQLTGARTVPR 71 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCT--T-SEEEEEGGGSTTHHHHHHH-------------------HHHHHSCCCSCE
T ss_pred EEEEECCCCchHHHHHHHHHHhCCcc--c-eeeeeecccccccHHHHHH-------------------HhhccCCCcCcE
Confidence 56789999999998877666542221 1 3666666666555543333 445567788998
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
+|+ +|+.+
T Consensus 72 Ifi---~g~~I 79 (105)
T d1ktea_ 72 VFI---GKECI 79 (105)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 865 56654
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=95.25 E-value=0.021 Score=41.93 Aligned_cols=60 Identities=13% Similarity=0.254 Sum_probs=39.3
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
+..|..+|||+|.+....|.+. ++.+..++++.+.+. ...+.+..|.+.+|.
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~~--------~i~y~~~di~~~~~~--------------------~~~~~~~~g~~tvP~ 54 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAAK--------------------REEMIKRSGRTTVPQ 54 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSHH--------------------HHHHHHHHSSCCSCE
T ss_pred EEEEeCCCCHhHHHHHHHHHHc--------CCCeEEEeccchHHH--------------------HHHHHHHhCCCCCCe
Confidence 3457889999999876655443 255666677655332 124556678899998
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
+++ +|+.+
T Consensus 55 i~i---~~~~I 62 (82)
T d1fova_ 55 IFI---DAQHI 62 (82)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 764 46554
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.019 Score=42.55 Aligned_cols=37 Identities=11% Similarity=0.199 Sum_probs=28.7
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d 401 (569)
++.|..++||+|.+....|.++..++. ++.+.-+.++
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~----~i~~~~~~~~ 39 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERD----DFQYQYVDIR 39 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS----SCEEEEECHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCC----CceEEEEecC
Confidence 567889999999999998888777765 3667666554
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.14 E-value=0.12 Score=40.44 Aligned_cols=75 Identities=13% Similarity=0.307 Sum_probs=50.9
Q ss_pred ccCCCCEEEEEEec-CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 353 SDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 353 ~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
+.+++.+.++.|-+ ..|+.|..+...|++++. +.+ .+.+.....+... ..++++
T Consensus 18 ~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~-lSd---ki~~~~~~~~~~e---------------------~~~~~~ 72 (119)
T d1a8la1 18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSE-LTD---KLSYEIVDFDTPE---------------------GKELAK 72 (119)
T ss_dssp GGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHT-TCT---TEEEEEEETTSHH---------------------HHHHHH
T ss_pred HhCCCCEEEEEEecCCCchhHHHHHHHHHHHHh-hCC---CeEEEEeccCcch---------------------hhhHHH
Confidence 34445555666654 579999988887777644 333 3777766666432 346899
Q ss_pred hcCCCCccEEEEECCCCc---EEEc
Q 008336 432 KFKVSGIPMLVAIGPSGR---TITK 453 (569)
Q Consensus 432 ~~~v~~~Pt~~lid~~G~---i~~~ 453 (569)
.|+|...|++.|.+. |+ |++.
T Consensus 73 ~~~ver~Ps~~i~~~-g~~~gIrF~ 96 (119)
T d1a8la1 73 RYRIDRAPATTITQD-GKDFGVRYF 96 (119)
T ss_dssp HTTCCSSSEEEEEET-TBCCSEEEE
T ss_pred hhccccCceEEEecC-CcccceEEE
Confidence 999999999999854 43 5555
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=95.03 E-value=0.12 Score=36.85 Aligned_cols=71 Identities=21% Similarity=0.395 Sum_probs=46.0
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
|..|..++|+.|......|.+ .. ++.+.-++++.++ ++..+|+.+ +|.
T Consensus 2 ltLyt~~~C~LCe~A~~~l~~----~~----~~~~~~vdI~~d~-----------------------~l~~~y~~~-IPV 49 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALAQ----AR----AGAFFSVFIDDDA-----------------------ALESAYGLR-VPV 49 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHHH----TT----CCCEEEEECTTCH-----------------------HHHHHHTTT-CSE
T ss_pred EEEECCCCccHHHHHHHHHHh----cc----CCcEEEEEccCCH-----------------------HHHHHhCCe-eeE
Confidence 456789999999876544422 11 3567777777765 477889866 896
Q ss_pred EEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHH
Q 008336 441 LVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 479 (569)
Q Consensus 441 ~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~ 479 (569)
+. + .+|....- ||..++++++.+
T Consensus 50 l~-~-~~~~~l~w--------------~fd~~~l~~~L~ 72 (75)
T d1ttza_ 50 LR-D-PMGRELDW--------------PFDAPRLRAWLD 72 (75)
T ss_dssp EE-C-TTCCEEES--------------CCCHHHHHHHHH
T ss_pred EE-E-CCeeEEcC--------------ccCHHHHHHHHh
Confidence 53 4 34555443 687777765543
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.026 Score=48.47 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCC
Q 008336 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGD 80 (569)
Q Consensus 36 ~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d 80 (569)
..++ ++|.|+.-.||||+++.+.+..+.+...... .+.++.....
T Consensus 16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 62 (188)
T d1fvka_ 16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN 62 (188)
T ss_dssp CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence 3567 8899999999999999988866554333221 3566666543
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=94.60 E-value=0.055 Score=39.46 Aligned_cols=61 Identities=11% Similarity=0.269 Sum_probs=39.4
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
+..|..+|||+|.+....|.+ . ++.+..+.++.+... ..++.+..|.+.+|.
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~----~-----~i~y~~~di~~~~~~-------------------~~~~~~~~g~~tvP~ 54 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSS----K-----GVSFQELPIDGNAAK-------------------REEMIKRSGRTTVPQ 54 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHH----H-----TCCCEEEECTTCSHH-------------------HHHHHHHHSSCCSCE
T ss_pred EEEEeCCCCHhHHHHHHHHHH----c-----CCCeEEEeccchHHH-------------------HHHHHHHhCCCCCCe
Confidence 456788999999988776643 2 244555666655432 234556678889998
Q ss_pred EEEECCCCcEEE
Q 008336 441 LVAIGPSGRTIT 452 (569)
Q Consensus 441 ~~lid~~G~i~~ 452 (569)
+++ +|+.+.
T Consensus 55 i~i---~~~~IG 63 (82)
T d1fova_ 55 IFI---DAQHIG 63 (82)
T ss_dssp EEE---TTEEEE
T ss_pred EEE---CCEEEe
Confidence 764 566553
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.56 E-value=0.0087 Score=46.48 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=41.1
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|..+|||+|.+....|.++.-+ ...+.+.-+..+.+...+.+ .+.+..+.+.+|.
T Consensus 14 Vviysk~~Cp~C~~ak~ll~~~~~~----~~~~~~~e~d~~~d~~~~~~------------------~l~~~~g~~tvPq 71 (105)
T d1ktea_ 14 VVVFIKPTCPFCRKTQELLSQLPFK----EGLLEFVDITATSDTNEIQD------------------YLQQLTGARTVPR 71 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBC----TTSEEEEEGGGSTTHHHHHH------------------HHHHHHSCCCSCE
T ss_pred EEEEECCCCchHHHHHHHHHHhCCc----cceeeeeecccccccHHHHH------------------HHhhccCCCcCcE
Confidence 5578999999999988876543222 22355555555544433322 2344457788998
Q ss_pred EEEECCCCcEEE
Q 008336 441 LVAIGPSGRTIT 452 (569)
Q Consensus 441 ~~lid~~G~i~~ 452 (569)
+|+ +|+.+.
T Consensus 72 Ifi---~g~~IG 80 (105)
T d1ktea_ 72 VFI---GKECIG 80 (105)
T ss_dssp EEE---TTEEEE
T ss_pred EEE---CCEEEe
Confidence 875 576653
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=94.56 E-value=0.031 Score=40.00 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=37.5
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|..++||+|.+....|.+. + +....++++.+.. ...+.+..+...+|.
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~-------~-i~~~~~~v~~~~~---------------------~~~~~~~~~~~tvP~ 57 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDK-------G-LSFEEIILGHDAT---------------------IVSVRAVSGRTTVPQ 57 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-------T-CCCEEEETTTTCC---------------------HHHHHHHTCCSSSCE
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------C-CCeEEEEccCcHH---------------------HHHHHHHhCCccCCE
Confidence 4668899999999887666553 2 4445555553311 123555678889998
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
+++ +|+.+
T Consensus 58 i~i---~g~~I 65 (74)
T d1nm3a1 58 VFI---GGKHI 65 (74)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 654 56554
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=94.55 E-value=0.2 Score=35.58 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=46.4
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
|..|..++|+.|......|.+ . . .+.+..++++.++ .+..+|+.. +|.
T Consensus 2 ltLyt~~~C~LCe~A~~~l~~---~---~-~~~~~~vdI~~d~------------------------~l~~~y~~~-IPV 49 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALAQ---A---R-AGAFFSVFIDDDA------------------------ALESAYGLR-VPV 49 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHHH---T---T-CCCEEEEECTTCH------------------------HHHHHHTTT-CSE
T ss_pred EEEECCCCccHHHHHHHHHHh---c---c-CCcEEEEEccCCH------------------------HHHHHhCCe-eeE
Confidence 456789999999765443322 1 2 2667778888764 377888866 795
Q ss_pred EEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHH
Q 008336 121 LVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKE 159 (569)
Q Consensus 121 ~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (569)
+. + .+|.... .||+..++.+++.
T Consensus 50 l~-~-~~~~~l~--------------w~fd~~~l~~~L~ 72 (75)
T d1ttza_ 50 LR-D-PMGRELD--------------WPFDAPRLRAWLD 72 (75)
T ss_dssp EE-C-TTCCEEE--------------SCCCHHHHHHHHH
T ss_pred EE-E-CCeeEEc--------------CccCHHHHHHHHh
Confidence 43 4 3455443 3678888887764
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=94.48 E-value=0.065 Score=38.18 Aligned_cols=60 Identities=23% Similarity=0.290 Sum_probs=37.6
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|+.++||+|.+....|.+. ++....+.++.+.. ...+.+..+...+|.
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~---------~i~~~~~~v~~~~~--------------------~~~~~~~~~~~tvP~ 57 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDK---------GLSFEEIILGHDAT--------------------IVSVRAVSGRTTVPQ 57 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH---------TCCCEEEETTTTCC--------------------HHHHHHHTCCSSSCE
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCeEEEEccCcHH--------------------HHHHHHHhCCccCCE
Confidence 4568899999999998776542 13334445554321 123445667889998
Q ss_pred EEEECCCCcEEE
Q 008336 441 LVAIGPSGRTIT 452 (569)
Q Consensus 441 ~~lid~~G~i~~ 452 (569)
+++ +|+.+.
T Consensus 58 i~i---~g~~IG 66 (74)
T d1nm3a1 58 VFI---GGKHIG 66 (74)
T ss_dssp EEE---TTEEEE
T ss_pred EEE---CCEEEE
Confidence 754 566553
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.14 E-value=0.14 Score=36.59 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=44.3
Q ss_pred EEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEE
Q 008336 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121 (569)
Q Consensus 42 v~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 121 (569)
|..+.+.|+.|.++....+++.+++.- +.+|..| . +. .++. .|||.++|.+
T Consensus 4 IkVlg~gC~~C~~~~~~v~~a~~e~gi--~a~v~kv--~-d~-----------------------~ei~-~ygVmstPal 54 (77)
T d1iloa_ 4 IQIYGTGCANCQMLEKNAREAVKELGI--DAEFEKI--K-EM-----------------------DQIL-EAGLTALPGL 54 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHTTC--CEEEEEE--C-SH-----------------------HHHH-HHTCSSSSCE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHcCC--ceEEEEe--C-CH-----------------------HHHH-HcCCcCCCEE
Confidence 344589999999999999998888642 4666655 2 22 2465 4999999998
Q ss_pred EEECCCCcEEEc
Q 008336 122 VILDENGKVLSD 133 (569)
Q Consensus 122 ~lid~~G~i~~~ 133 (569)
++ ||+++..
T Consensus 55 vI---dg~vv~~ 63 (77)
T d1iloa_ 55 AV---DGELKIM 63 (77)
T ss_dssp EE---TTEEEEC
T ss_pred EE---CCEEEEE
Confidence 76 6888764
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=93.89 E-value=0.018 Score=42.56 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=29.0
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d 80 (569)
+|.|..+|||+|.+....|.++.-++. .+.+..++++
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~---~i~~~~~~~~ 39 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQYVDIR 39 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEEECHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCC---CceEEEEecC
Confidence 567889999999999888888877765 3667766654
|
| >d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Kinase suppressor of Ras, Ksr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.35 E-value=0.028 Score=36.57 Aligned_cols=30 Identities=20% Similarity=0.626 Sum_probs=26.1
Q ss_pred eeccCCCCCCCceeEEcCCCCCCccccccCC
Q 008336 509 YSCDGCDEEGRVWAFSCDECDFCLHPNCALG 539 (569)
Q Consensus 509 ~~c~~C~~~g~~~~~~~~~~~~~~~~~~~~~ 539 (569)
..|+-|+..-. +.|+|.+|.|-.|.+|+..
T Consensus 15 ~tC~~C~~~l~-qg~~C~~C~~~~Hk~C~~~ 44 (49)
T d1kbea_ 15 QVCNVCQKSMI-FGVKCKHCRLKCHNKCTKE 44 (49)
T ss_dssp CCCSSSCCSSC-CEEEETTTTEEESSSCTTT
T ss_pred CCchhhchhhh-CcCCcCCCCChHhHhhccc
Confidence 34999999885 7899999999999999843
|
| >d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: RAF-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.044 Score=36.12 Aligned_cols=42 Identities=21% Similarity=0.472 Sum_probs=32.6
Q ss_pred cceeee-cccCeeeccCCCCCCCceeEEcCCCCCCccccccCCc
Q 008336 498 EHELVL-DRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGE 540 (569)
Q Consensus 498 ~~~l~~-~~~~~~~c~~C~~~g~~~~~~~~~~~~~~~~~~~~~~ 540 (569)
.|.+.. +..++-.|+-|..... ..|+|..|++.+|.+|+...
T Consensus 3 ~H~F~~~~f~~~~~C~~C~~~i~-~g~~C~~C~~~~H~~C~~~v 45 (52)
T d1faqa_ 3 THNFARKTFLKLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp CCCCEEECCSSCEECTTSSSEEC-SEEECTTTTCCBCSTTSSSS
T ss_pred ceEEEEeeCCCCcCCccCCCccc-cCCCcCCCCChhhhhhhccc
Confidence 344533 2356789999998875 68999999999999999643
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.81 E-value=0.25 Score=35.18 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=44.5
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccEE
Q 008336 362 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPML 441 (569)
Q Consensus 362 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~ 441 (569)
|..+++.|+.|.+.....+++..++.- +.+|.-|. +. .++. .|||.++|.+
T Consensus 4 IkVlg~gC~~C~~~~~~v~~a~~e~gi---~a~v~kv~---d~----------------------~ei~-~ygVmstPal 54 (77)
T d1iloa_ 4 IQIYGTGCANCQMLEKNAREAVKELGI---DAEFEKIK---EM----------------------DQIL-EAGLTALPGL 54 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHTTC---CEEEEEEC---SH----------------------HHHH-HHTCSSSSCE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHcCC---ceEEEEeC---CH----------------------HHHH-HcCCcCCCEE
Confidence 334589999999999999888777642 35665552 22 1355 5999999998
Q ss_pred EEECCCCcEEEcc
Q 008336 442 VAIGPSGRTITKE 454 (569)
Q Consensus 442 ~lid~~G~i~~~~ 454 (569)
++ ||+++..+
T Consensus 55 vI---dg~vv~~G 64 (77)
T d1iloa_ 55 AV---DGELKIMG 64 (77)
T ss_dssp EE---TTEEEECS
T ss_pred EE---CCEEEEEe
Confidence 86 68888874
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.25 E-value=0.46 Score=37.03 Aligned_cols=68 Identities=16% Similarity=0.337 Sum_probs=47.1
Q ss_pred CCCCCc-EEEEEec-CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHH
Q 008336 34 DSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (569)
Q Consensus 34 ~~~~gk-vlv~F~a-~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (569)
+.+++. .|+.|-+ ..|+.|..+...+.+++ .+.+ ++.+...+.+.... ..+++
T Consensus 18 ~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela-~lSd--ki~~~~~~~~~~e~----------------------~~~~~ 72 (119)
T d1a8la1 18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQELS-ELTD--KLSYEIVDFDTPEG----------------------KELAK 72 (119)
T ss_dssp GGCCSCEEEEEEECSSSCTTHHHHHHHHHHHH-TTCT--TEEEEEEETTSHHH----------------------HHHHH
T ss_pred HhCCCCEEEEEEecCCCchhHHHHHHHHHHHH-hhCC--CeEEEEeccCcchh----------------------hhHHH
Confidence 455666 4555543 57999998877777764 3443 47777666664332 46889
Q ss_pred hcCCCCccEEEEECC
Q 008336 112 LFKVMGIPHLVILDE 126 (569)
Q Consensus 112 ~~~v~~~P~~~lid~ 126 (569)
.|++...|++.+.+.
T Consensus 73 ~~~ver~Ps~~i~~~ 87 (119)
T d1a8la1 73 RYRIDRAPATTITQD 87 (119)
T ss_dssp HTTCCSSSEEEEEET
T ss_pred hhccccCceEEEecC
Confidence 999999999998863
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=91.86 E-value=0.3 Score=41.99 Aligned_cols=24 Identities=17% Similarity=-0.075 Sum_probs=17.2
Q ss_pred cEEEEEEecCCcccchhhhHHHHH
Q 008336 198 KTIGLYFSMSSYKASAEFTPRLVE 221 (569)
Q Consensus 198 k~v~l~f~~~~~~~c~~~~~~~~~ 221 (569)
++.++-|+...||+|..|.|.+..
T Consensus 114 ~~~VvEffsy~Cp~C~~~e~~l~~ 137 (195)
T d1un2a_ 114 APQVLEFFSFFCPHCYQFEEVLHI 137 (195)
T ss_dssp CCSEEEEECTTCHHHHHHHHTSCH
T ss_pred CceEEEEEecCCccccccchhhhH
Confidence 333444556999999999997653
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=91.15 E-value=0.24 Score=39.58 Aligned_cols=70 Identities=9% Similarity=0.055 Sum_probs=49.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC-
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV- 435 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v- 435 (569)
++++++.|+..- .........+.+++++++++ +.++.++.+... ...+.||+
T Consensus 23 ~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~k---i~Fv~vd~~~~~-----------------------~~l~~~gl~ 75 (133)
T d2djka1 23 GIPLAYIFAETA-EERKELSDKLKPIAEAQRGV---INFGTIDAKAFG-----------------------AHAGNLNLK 75 (133)
T ss_dssp TSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTT---SEEEEECTTTTG-----------------------GGTTTTTCC
T ss_pred CCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCc---eEEEEEeHHHhH-----------------------HHHHHhcCC
Confidence 678888887654 35677888899999998765 777777654332 34566777
Q ss_pred -CCccEEEEECCCCcEEEc
Q 008336 436 -SGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 436 -~~~Pt~~lid~~G~i~~~ 453 (569)
...|.+++++.++...+.
T Consensus 76 ~~~~P~~~i~~~~~~~~~~ 94 (133)
T d2djka1 76 TDKFPAFAIQEVAKNQKFP 94 (133)
T ss_dssp SSSSSEEEEECTTTCCBCC
T ss_pred cccCCcEEEEEcCCCceec
Confidence 468999999877765544
|
| >d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Protein kinase c-gamma species: Rat (Rattus rattus) [TaxId: 10117]
Probab=87.26 E-value=0.21 Score=34.47 Aligned_cols=43 Identities=21% Similarity=0.442 Sum_probs=32.0
Q ss_pred cceeeec-ccCeeeccCCCCCCCc---eeEEcCCCCCCccccccCCc
Q 008336 498 EHELVLD-RCGVYSCDGCDEEGRV---WAFSCDECDFCLHPNCALGE 540 (569)
Q Consensus 498 ~~~l~~~-~~~~~~c~~C~~~g~~---~~~~~~~~~~~~~~~~~~~~ 540 (569)
.|.+... ..++-.|+-|...-.+ .+|+|..|.+-.|.+|+...
T Consensus 8 ~H~F~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v 54 (66)
T d1tbna_ 8 KHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSV 54 (66)
T ss_dssp SCCEEECCSSSCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTTS
T ss_pred CCceEEEeCCCCcCCcCCCCcccCcccCccccCcccCeEChHHhccc
Confidence 4666442 3556789999876433 47999999999999999643
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.61 E-value=2.1 Score=33.28 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=50.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
|+++++.|+.+- ..-......+.+++++++++ +.++.++.+.. ....+.||+.
T Consensus 17 ~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkgk---i~Fv~~D~~~~-----------------------~~~l~~fgl~ 69 (125)
T d2b5ea3 17 GLPLGYLFYNDE-EELEEYKPLFTELAKKNRGL---MNFVSIDARKF-----------------------GRHAGNLNMK 69 (125)
T ss_dssp TSCEEEEEESSH-HHHHHHHHHHHHHHHHTTTT---CEEEEEEHHHH-----------------------TTHHHHTTCC
T ss_pred CCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcCe---eEEEEEchHHh-----------------------HHHHHHcCCC
Confidence 788888888763 23456788899999999876 77877765422 2356778875
Q ss_pred -CccEEEEECCCCcEEEc
Q 008336 437 -GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 437 -~~Pt~~lid~~G~i~~~ 453 (569)
..|.+++++.+....+.
T Consensus 70 e~~P~~~i~~~~~~~ky~ 87 (125)
T d2b5ea3 70 EQFPLFAIHDMTEDLKYG 87 (125)
T ss_dssp SCSSEEEEEETTTTEEEE
T ss_pred ccCCcEEEEecccCcccc
Confidence 48999999776655554
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=86.13 E-value=2.2 Score=37.07 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=49.0
Q ss_pred CEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCC---cccccCchhhHHHHHhcC
Q 008336 358 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW---LALPFGDARKASLSRKFK 434 (569)
Q Consensus 358 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~---~~~~~~~d~~~~l~~~~~ 434 (569)
+.||=.|.+.||..|......|.+|.+. +++-.+.+.+|- .+..+| +..|....+....++.++
T Consensus 6 ~aVVElFTSqgCssCPpAd~~L~~L~~~-----~~Vi~La~HVdY--------Wd~lGw~D~fa~~~~t~RQ~~Y~~~~g 72 (225)
T d2axoa1 6 KGVVELFTSQGCASCPPADEALRKMIQK-----GDVVGLSYHVDY--------WNYLGWTDSLASKENTERQYGYMRALG 72 (225)
T ss_dssp CCEEEEEECTTCTTCHHHHHHHHHHHHH-----TSSEEEEEECST--------TCSSSSCCTTCCHHHHHHHHHHHHHTT
T ss_pred CcEEEEeeCCCCCCCHHHHHHHHHhhCC-----CCEEEEEecccc--------ccccCCCCCCCCchhhHHHHHHHHhcC
Confidence 3455567799999999999999888653 258888888871 111222 223333344455677788
Q ss_pred CCCccE-EEEECCCCcEE
Q 008336 435 VSGIPM-LVAIGPSGRTI 451 (569)
Q Consensus 435 v~~~Pt-~~lid~~G~i~ 451 (569)
.+.+|| -+++ +|+.-
T Consensus 73 ~~~vyTPq~vv--nG~~~ 88 (225)
T d2axoa1 73 RNGVYTPQAIL--NGRDH 88 (225)
T ss_dssp CSCCCSSEEEE--TTTEE
T ss_pred CCCCCceeEEE--eCccc
Confidence 887665 2233 45543
|
| >d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.87 E-value=0.72 Score=35.23 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=35.5
Q ss_pred CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECC
Q 008336 47 SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDE 126 (569)
Q Consensus 47 ~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~ 126 (569)
|.||+|.+....|.++ + +.+..++++.+.+. ...+.+..+...+|.+|+
T Consensus 28 p~Cp~c~~ak~lL~~~-------~-i~~~~~~v~~~~~~--------------------~~~l~~~t~~~TvPqIFi--- 76 (109)
T d1wika_ 28 AKCGFSKQILEILNST-------G-VEYETFDILEDEEV--------------------RQGLKTFSNWPTYPQLYV--- 76 (109)
T ss_dssp CCSSTHHHHHHHHHHT-------C-SCEEEEESSSCHHH--------------------HHHHHHHHSCCSSCEEEC---
T ss_pred CCChHHHHHHHHHHhc-------C-CCceEEEecccHHH--------------------HHHHHHhcCCCCCCeEEE---
Confidence 8899999877665432 2 55666777766542 123555667788998885
Q ss_pred CCcEE
Q 008336 127 NGKVL 131 (569)
Q Consensus 127 ~G~i~ 131 (569)
+|+.+
T Consensus 77 ~g~~I 81 (109)
T d1wika_ 77 RGDLV 81 (109)
T ss_dssp SSSEE
T ss_pred CCEEE
Confidence 56655
|
| >d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Beta-chimaerin, middle domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.82 E-value=0.26 Score=33.47 Aligned_cols=42 Identities=21% Similarity=0.517 Sum_probs=31.0
Q ss_pred ceeee-cccCeeeccCCCCC--CC-ceeEEcCCCCCCccccccCCc
Q 008336 499 HELVL-DRCGVYSCDGCDEE--GR-VWAFSCDECDFCLHPNCALGE 540 (569)
Q Consensus 499 ~~l~~-~~~~~~~c~~C~~~--g~-~~~~~~~~~~~~~~~~~~~~~ 540 (569)
|.+.. +..++-.|+-|... |. ..+|.|.+|++-.|.+|....
T Consensus 5 H~F~~~~~~~pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v 50 (62)
T d1xa6a3 5 HNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHV 50 (62)
T ss_dssp CCCCEECCSSCCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTTS
T ss_pred CEEEEeeCCCCCCCcccCccccccccCeEEcCCCCchhhHHHHhhC
Confidence 44433 23556789999886 33 368999999999999998543
|
| >d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: ZZ domain domain: Zinc finger ZZ-type-containing protein 3, ZZZ3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.01 E-value=0.24 Score=34.53 Aligned_cols=31 Identities=23% Similarity=0.680 Sum_probs=27.7
Q ss_pred eeeccCCCCCC-CceeEEcCCC----CCCccccccC
Q 008336 508 VYSCDGCDEEG-RVWAFSCDEC----DFCLHPNCAL 538 (569)
Q Consensus 508 ~~~c~~C~~~g-~~~~~~~~~~----~~~~~~~~~~ 538 (569)
.+.||+|.... .|-.|.|..| ||||=..|..
T Consensus 14 ~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~ 49 (69)
T d2fc7a1 14 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSD 49 (69)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTT
T ss_pred CeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhc
Confidence 47999999985 7789999999 8999999974
|
| >d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Diacylglycerol kinase delta species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.53 E-value=0.23 Score=36.20 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=31.9
Q ss_pred ccceeee-cccCeeeccCCCCCCC----ceeEEcCCCCCCccccccCC
Q 008336 497 HEHELVL-DRCGVYSCDGCDEEGR----VWAFSCDECDFCLHPNCALG 539 (569)
Q Consensus 497 ~~~~l~~-~~~~~~~c~~C~~~g~----~~~~~~~~~~~~~~~~~~~~ 539 (569)
.+|-++. +...+-.|+-|.+.-. ...|+|..|.+-+|.+|...
T Consensus 26 ~~H~w~~~n~~~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H~~C~~~ 73 (84)
T d1r79a_ 26 MPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKES 73 (84)
T ss_dssp BCCCEEESCCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHH
T ss_pred CCceEEeCCCCCCCCCcccCcccCCccccCcEecCcCCchhhhhhcCC
Confidence 3566655 2345668999988742 25799999999999999853
|