Citrus Sinensis ID: 008341

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
MARNRSSSSSSSSGKLRYCNPAYYLKRPKRLAMLLIVFVSVTLVVWDRQTLVREHEVELSELNEEVTQLRNLLEEIKNNPANVIGKIDHIKQAKQPPGNKAFAEDPIDIQRKQKVKDAMIHAWSSYEKYAWGQDELQLLYSMCLFWRISDYSFSSEFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIVTQHDGEISGRSDGQHRPNIRLRGRKGGRFIDDIRIH
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccEEcccccccccccccccccHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccEEEEccccccccccEEEccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccHHccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccEEEccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEccHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccEEEccccccccccEEEEcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccEEHEcHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccEEEccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHccEEEccccccccccccccccccccccccccccEcccccccccEccccccc
marnrssssssssgklrycnpayylkrpKRLAMLLIVFVSVTLVVWDRQTLVREHEVELSELNEEVTQLRNLLEEIknnpanvigkidhikqakqppgnkafaedpidiQRKQKVKDAMIHAWSSYEKYAWGQDELQLLYSMCLFwrisdysfssEFMWIANSldfnksydasvFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLlpawntrtgipynvinlahgnphnpswtggesiladsGTEQLELIALSqrtgdpkyrQKAEKVIVELNktfpadgllpiyispdrgtpsystitfgamGDSFYEYLLKVWIQGnktsavkpyRDMWETSMKGLLSLVRrstpssftYICEKNGDSLIDKMDELacfapgmialgssgygpgdseKFLSLAEELAWTCYNfyqstptklagenyffrdgqdmsvgtswnilrpetVESLFYLWRLTGNKTYKEWGWNIFQAFEknsriesgyvglkdvntgdkdnMMQSFFLAETLKYLYLLFspttvisldewvfnteahplkivtqhdgeisgrsdgqhrpnirlrgrkggrfiddirih
marnrssssssssgklryCNPAYYLKRPKRLAMLLIVFVSVTLVVWDRQTLVRehevelselneEVTQLRNLLEEIKNNPANVIGKIDHIKQAKQPPGNKAFAEDPIDIQRKQKVKDAMIHAWSSYEKYAWGQDELQLLYSMCLFWRISDYSFSSEFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALsqrtgdpkyrQKAEKVIVELnktfpadgllpIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIvtqhdgeisgrsdgqhrpnirlrgrkggrfiddirih
MARNRssssssssGKLRYCNPAYYLKRPKRLAMLLIVFVSVTLVVWDRQTLVRehevelselneevTQLRNLLEEIKNNPANVIGKIDHIKQAKQPPGNKAFAEDPIDIQRKQKVKDAMIHAWSSYEKYAWGQDELQLLYSMCLFWRISDYSFSSEFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIVTQHDGEISGRSDGQHRPNIRLRGRKGGRFIDDIRIH
***************LRYCNPAYYLKRPKRLAMLLIVFVSVTLVVWDRQTLVREHEVELSELNEEVTQLRNLLEEIKNNPANVIGKIDH************************KVKDAMIHAWSSYEKYAWGQDELQLLYSMCLFWRISDYSFSSEFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILA******LELIAL***********KAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIVT***********************************
*****************YCNPAYYLKRPKRLAMLLIVFVSVTLVVWDRQT*************************************************************KQKVKDAMIHAWSSYEKYAWGQDELQLLYSMCLFWRISDYSFSSEFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHN**WTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIVT***********************************
***************LRYCNPAYYLKRPKRLAMLLIVFVSVTLVVWDRQTLVREHEVELSELNEEVTQLRNLLEEIKNNPANVIGKIDHIKQAKQPPGNKAFAEDPIDIQRKQKVKDAMIHAWSSYEKYAWGQDELQLLYSMCLFWRISDYSFSSEFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQR********KAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIVTQHDGEISGRSDGQHRPNIRLRGRKGGRFIDDIRIH
*************GKLRYCNPAYYLKRPKRLAMLLIVFVSVTLVVWDRQTLVREHEVELSELNEEVTQLRNLLEEIKN***************************PIDIQRKQKVKDAMIHAWSSYEKYAWGQDELQLLYSMCLFWRISDYSFSSEFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIVTQ***********************G*RFID*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MARNRSSSSSSSSGKLRYCNPAYYLKRPKRLAMLLIVFVSVTLVVWDRQTLxxxxxxxxxxxxxxxxxxxxxxxxxxxxPANVIGKIDHIKQAKQPPGNKAFAEDPIDIQRKQKVKDAMIHAWSSYEKYAWGQDELQLLYSMCLFWRISDYSFSSEFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIVTQHDGEISGRSDGQHRPNIRLRGRKGGRFIDDIRIH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query569 2.2.26 [Sep-21-2011]
Q9C512560 Mannosyl-oligosaccharide yes no 0.942 0.957 0.722 0.0
Q8H116572 Mannosyl-oligosaccharide no no 0.952 0.947 0.695 0.0
P45700655 Mannosyl-oligosaccharide yes no 0.757 0.658 0.403 2e-92
P45701469 Mannosyl-oligosaccharide no no 0.748 0.908 0.419 8e-91
P53624667 Mannosyl-oligosaccharide yes no 0.753 0.643 0.408 8e-91
P53625643 Mannosyl-oligosaccharide no no 0.738 0.653 0.406 2e-89
P33908653 Mannosyl-oligosaccharide yes no 0.857 0.747 0.364 2e-88
O60476641 Mannosyl-oligosaccharide no no 0.864 0.767 0.375 3e-88
O02773659 Mannosyl-oligosaccharide no no 0.760 0.657 0.390 6e-88
P39098641 Mannosyl-oligosaccharide no no 0.859 0.762 0.377 1e-87
>sp|Q9C512|MNS1_ARATH Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 OS=Arabidopsis thaliana GN=MNS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/587 (72%), Positives = 471/587 (80%), Gaps = 51/587 (8%)

Query: 1   MARNRSSSSSSSSGKLRYCNPAYYLKRPKRLAMLLIVFVSVTLVVWDRQTLVREHEVELS 60
           MAR+RS S     G  +Y NPAYYL+RP+RLA+L IVFVSV+++VWDR  L REHEVE+ 
Sbjct: 1   MARSRSISGY---GIWKYLNPAYYLRRPRRLALLFIVFVSVSMLVWDRINLAREHEVEVF 57

Query: 61  ELNEEVTQLRNLLEEIKNNPANVIGKIDHIKQAKQPPGNKAFAEDPIDIQRKQKVKDAMI 120
           +LNEEV++L  +LEE+     N       +K  K  P      EDP+D QR+QKVK+AMI
Sbjct: 58  KLNEEVSRLEQMLEELNGGVGN-----KPLKTLKDAP------EDPVDKQRRQKVKEAMI 106

Query: 121 HAWSSYEKYAWGQDELQ----------------------LLYSMCLFWRISDYSFSSEFM 158
           HAWSSYEKYAWG+DELQ                       LY M L     D  F     
Sbjct: 107 HAWSSYEKYAWGKDELQPRTKDGTDSFGGLGATMVDSLDTLYIMGL-----DEQFQKARE 161

Query: 159 WIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGI 218
           W+A+SLDF+K YDAS+FETTIRVVGGLLSAYDLSGDK+FLEKA+DIADRLLPAWNT TGI
Sbjct: 162 WVASSLDFDKDYDASMFETTIRVVGGLLSAYDLSGDKMFLEKAKDIADRLLPAWNTPTGI 221

Query: 219 PYNVINLAHGNPHNPSWT-GGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNK 277
           PYN+INL +GN HNPSW  GG+SILADSGTEQLE IALSQRTGDPKY+QK EKVI ELNK
Sbjct: 222 PYNIINLRNGNAHNPSWAAGGDSILADSGTEQLEFIALSQRTGDPKYQQKVEKVITELNK 281

Query: 278 TFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETS 337
            FPADGLLPIYI+PD   PSYST TFGAMGDSFYEYLLKVW+QGNKTSAVKPYRDMWE S
Sbjct: 282 NFPADGLLPIYINPDNANPSYSTTTFGAMGDSFYEYLLKVWVQGNKTSAVKPYRDMWEKS 341

Query: 338 MKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSL 397
           MKGLLSLV++STPSSFTYICEKNG++LIDKMDELACFAPGM+ALG+SGYGP + +KFLSL
Sbjct: 342 MKGLLSLVKKSTPSSFTYICEKNGNNLIDKMDELACFAPGMLALGASGYGPDEEKKFLSL 401

Query: 398 AEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKT 457
           A ELAWTCYNFYQSTPTKLAGENYFF  GQDMSVGTSWNILRPETVESLFYLWRLTGNKT
Sbjct: 402 AGELAWTCYNFYQSTPTKLAGENYFFTAGQDMSVGTSWNILRPETVESLFYLWRLTGNKT 461

Query: 458 YKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLYLLFSPTTVIS 517
           Y+EWGWNIFQAFEKNSR+ESGYVGLKDVNTG KDN MQSFFLAETLKYLYLLFSP++VIS
Sbjct: 462 YQEWGWNIFQAFEKNSRVESGYVGLKDVNTGAKDNKMQSFFLAETLKYLYLLFSPSSVIS 521

Query: 518 LDEWVFNTEAHPLKIVTQHDGEISGRSDGQHRPNIRLRGRKGGRFID 564
           LDEWVFNTEAHPLKIV ++D           +P I LR RK G  I+
Sbjct: 522 LDEWVFNTEAHPLKIVARND---------PRKPTIALRQRKFGHQIN 559
Class I alpha-mannosidase essential for early N-glycan processing. Progressively trim alpha-1,2-linked mannose residues. Produces Man(5)GlcNAc(2) from Man(8)GlcNAc(2), but only Man(6)GlcNAc(2) from Man(9)GlcNAc(2). Have difficulty acting on the terminal mannose of the b-branch. Involved in root development and cell wall biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 1EC: 3
>sp|Q8H116|MNS2_ARATH Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS2 OS=Arabidopsis thaliana GN=MNS2 PE=1 SV=1 Back     alignment and function description
>sp|P45700|MA1A1_MOUSE Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA OS=Mus musculus GN=Man1a1 PE=1 SV=1 Back     alignment and function description
>sp|P45701|MA1A1_RABIT Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA (Fragment) OS=Oryctolagus cuniculus GN=MAN1A1 PE=1 SV=1 Back     alignment and function description
>sp|P53624|MA121_DROME Mannosyl-oligosaccharide alpha-1,2-mannosidase isoform A OS=Drosophila melanogaster GN=alpha-Man-I PE=1 SV=2 Back     alignment and function description
>sp|P53625|MA122_DROME Mannosyl-oligosaccharide alpha-1,2-mannosidase isoform B OS=Drosophila melanogaster GN=alpha-Man-I PE=2 SV=2 Back     alignment and function description
>sp|P33908|MA1A1_HUMAN Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA OS=Homo sapiens GN=MAN1A1 PE=1 SV=3 Back     alignment and function description
>sp|O60476|MA1A2_HUMAN Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB OS=Homo sapiens GN=MAN1A2 PE=2 SV=1 Back     alignment and function description
>sp|O02773|MA1A1_PIG Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA OS=Sus scrofa GN=MAN1A1 PE=1 SV=1 Back     alignment and function description
>sp|P39098|MA1A2_MOUSE Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB OS=Mus musculus GN=Man1a2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query569
359483238575 PREDICTED: mannosyl-oligosaccharide 1,2- 0.964 0.954 0.751 0.0
356523060576 PREDICTED: mannosyl-oligosaccharide 1,2- 0.964 0.953 0.732 0.0
343172549557 mannosyl-oligosaccharide 1,2-alpha-manno 0.940 0.960 0.737 0.0
343172551557 mannosyl-oligosaccharide 1,2-alpha-manno 0.940 0.960 0.737 0.0
351723733578 mannosyl-oligosaccharide 1,2-alpha-manno 0.949 0.934 0.731 0.0
449447984570 PREDICTED: mannosyl-oligosaccharide 1,2- 0.957 0.956 0.708 0.0
15217971560 mannosyl-oligosaccharide 1,2-alpha-manno 0.942 0.957 0.722 0.0
297852888560 hypothetical protein ARALYDRAFT_474272 [ 0.940 0.955 0.721 0.0
224097450524 predicted protein [Populus trichocarpa] 0.882 0.958 0.763 0.0
18402907572 mannosyl-oligosaccharide 1,2-alpha-manno 0.952 0.947 0.695 0.0
>gi|359483238|ref|XP_003632926.1| PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Vitis vinifera] gi|297735785|emb|CBI18472.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/591 (75%), Positives = 490/591 (82%), Gaps = 42/591 (7%)

Query: 1   MARNRSSSSSSSSGKLRYCNPAYYLKRPKRLAMLLIVFVSVTLVVWDRQTLVREHEVELS 60
           MAR RSS+S     + RYCNP+YYLKRPKRLA+L I FV V+ +VWDRQTLVRE E+E++
Sbjct: 1   MARARSSAS-----RWRYCNPSYYLKRPKRLALLFIAFVCVSFLVWDRQTLVREQEIEVA 55

Query: 61  ELNEEVTQLRNLLEEIKN---NPANVIGKIDHIKQAKQPPGNKAFAEDPIDIQRKQKVKD 117
            L  E+T L++LL+E+K+   N   V G+     +    P      +DPIDIQR++KVKD
Sbjct: 56  SLKAELTHLQDLLDELKSIGGNAGGVSGRNGKSSKKSTVP------DDPIDIQRREKVKD 109

Query: 118 AMIHAWSSYEKYAWGQDELQ----------------------LLYSMCLFWRISDYSFSS 155
           AM+HAWSSYEKYAWGQDELQ                       LY M L     D  F  
Sbjct: 110 AMLHAWSSYEKYAWGQDELQPQSKNGVNSFGGLGATLIDSLDTLYIMGL-----DEQFQR 164

Query: 156 EFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTR 215
              W+ANSLDFNK+Y+ASVFETTIRVVGGLLSAYDLS DK+FLEKARDIADRLLPAWNT 
Sbjct: 165 AREWVANSLDFNKNYEASVFETTIRVVGGLLSAYDLSEDKLFLEKARDIADRLLPAWNTP 224

Query: 216 TGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVEL 275
           +GIPYN+INLAHGN HNP WTGG+SILADSGTEQLE IALSQRTGDPKY++K E VI+EL
Sbjct: 225 SGIPYNIINLAHGNAHNPGWTGGDSILADSGTEQLEFIALSQRTGDPKYQKKVENVIIEL 284

Query: 276 NKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWE 335
           NKTFPADGLLPIYI+P RGT SYSTITFGAMGDSFYEYLLKVWIQGNKT+AVK YR+MWE
Sbjct: 285 NKTFPADGLLPIYINPHRGTSSYSTITFGAMGDSFYEYLLKVWIQGNKTAAVKHYREMWE 344

Query: 336 TSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFL 395
           TSMKGLLSLVRR+TPSSFTYICEKNGDSL DKMDELACFAPGMIALGS GYGP +S+KFL
Sbjct: 345 TSMKGLLSLVRRTTPSSFTYICEKNGDSLHDKMDELACFAPGMIALGSLGYGPEESQKFL 404

Query: 396 SLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGN 455
           SLAEELAWTCYNFYQSTPTKLAGENYFF  GQDMSVGTSWNILRPETVESLFYLWRLTGN
Sbjct: 405 SLAEELAWTCYNFYQSTPTKLAGENYFFHSGQDMSVGTSWNILRPETVESLFYLWRLTGN 464

Query: 456 KTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLYLLFSPTTV 515
           KTY+EWGWNIFQAFEKNSRIESGYVGLKDVN+G KDNMMQSFFLAETLKYLYLLFSP+TV
Sbjct: 465 KTYQEWGWNIFQAFEKNSRIESGYVGLKDVNSGVKDNMMQSFFLAETLKYLYLLFSPSTV 524

Query: 516 ISLDEWVFNTEAHPLKIVTQHD-GEISGRSDGQHRPNIRLRGRKGGRFIDD 565
           ISLDEWVFNTEAHP++I+T+HD GE  G SDGQ +   RLRGRK GR +DD
Sbjct: 525 ISLDEWVFNTEAHPIRIMTRHDNGENLGGSDGQQKQFYRLRGRKEGRRVDD 575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356523060|ref|XP_003530160.1| PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Glycine max] Back     alignment and taxonomy information
>gi|343172549|gb|AEL98978.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|343172551|gb|AEL98979.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|351723733|ref|NP_001238057.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine max] gi|6552504|gb|AAF16414.1|AF126550_1 mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine max] Back     alignment and taxonomy information
>gi|449447984|ref|XP_004141746.1| PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS2-like [Cucumis sativus] gi|449491802|ref|XP_004159007.1| PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15217971|ref|NP_175570.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Arabidopsis thaliana] gi|75168874|sp|Q9C512.1|MNS1_ARATH RecName: Full=Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1; Short=AtMANIb; AltName: Full=Alpha-mannosidase IB gi|12321674|gb|AAG50876.1|AC025294_14 mannosyl-oligosaccharide alpha-1,2-mannosidase, putative [Arabidopsis thaliana] gi|12325364|gb|AAG52623.1|AC024261_10 mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative; 8615-12432 [Arabidopsis thaliana] gi|19699013|gb|AAL91242.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Arabidopsis thaliana] gi|22136334|gb|AAM91245.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Arabidopsis thaliana] gi|332194565|gb|AEE32686.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297852888|ref|XP_002894325.1| hypothetical protein ARALYDRAFT_474272 [Arabidopsis lyrata subsp. lyrata] gi|297340167|gb|EFH70584.1| hypothetical protein ARALYDRAFT_474272 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224097450|ref|XP_002310939.1| predicted protein [Populus trichocarpa] gi|222850759|gb|EEE88306.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18402907|ref|NP_566675.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS2 [Arabidopsis thaliana] gi|75151865|sp|Q8H116.1|MNS2_ARATH RecName: Full=Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS2; Short=AtMANIa; AltName: Full=Alpha-mannosidase IA gi|24030231|gb|AAN41293.1| putative mannosidase [Arabidopsis thaliana] gi|332642947|gb|AEE76468.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query569
TAIR|locus:2017597560 MNS1 "alpha-mannosidase 1" [Ar 0.956 0.971 0.673 2.9e-199
TAIR|locus:2092965572 MNS2 "alpha-mannosidase 2" [Ar 0.957 0.952 0.655 2.1e-194
FB|FBgn0259170667 alpha-Man-I "alpha Mannosidase 0.710 0.605 0.423 1.2e-89
MGI|MGI:104677655 Man1a "mannosidase 1, alpha" [ 0.680 0.590 0.426 1.3e-88
UNIPROTKB|F1P0Z9512 MAN1C1 "Uncharacterized protei 0.685 0.761 0.442 2.7e-88
ZFIN|ZDB-GENE-041014-321639 man1a1 "mannosidase, alpha, cl 0.692 0.616 0.431 2.7e-88
RGD|1563595657 Man1b1 "mannosidase, alpha, cl 0.732 0.634 0.405 4.4e-88
UNIPROTKB|F1SAY6631 MAN1A2 "Uncharacterized protei 0.681 0.614 0.454 5e-87
UNIPROTKB|E2RDC8641 MAN1A2 "Uncharacterized protei 0.697 0.619 0.445 6.4e-87
UNIPROTKB|F1NQK8469 MAN1A1 "Uncharacterized protei 0.659 0.799 0.429 2.7e-86
TAIR|locus:2017597 MNS1 "alpha-mannosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1929 (684.1 bits), Expect = 2.9e-199, P = 2.9e-199
 Identities = 390/579 (67%), Positives = 438/579 (75%)

Query:     1 MARNRXXXXXXXXGKLRYCNPAYYLKRPKRLAMLLIVFVSVTLVVWDRQTLVRXXXXXXX 60
             MAR+R        G  +Y NPAYYL+RP+RLA+L IVFVSV+++VWDR  L R       
Sbjct:     1 MARSRSISGY---GIWKYLNPAYYLRRPRRLALLFIVFVSVSMLVWDRINLAREHEVEVF 57

Query:    61 XXXXXXTQLRNLLEEIKNNPANVIGKIDHIKQAKQPPGNKAFAEDPIDIQRKQKVKDAMI 120
                   ++L  +LEE+     N    +  +K A + P +K      +             
Sbjct:    58 KLNEEVSRLEQMLEELNGGVGNK--PLKTLKDAPEDPVDKQ-RRQKVKEAMIHAWSSYEK 114

Query:   121 HAWSSYEKY--------AWGQ------DELQLLYSMCLFWRISDYSFSSEFMWIANSLDF 166
             +AW   E          ++G       D L  LY M L     D  F     W+A+SLDF
Sbjct:   115 YAWGKDELQPRTKDGTDSFGGLGATMVDSLDTLYIMGL-----DEQFQKAREWVASSLDF 169

Query:   167 NKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLA 226
             +K YDAS+FETTIRVVGGLLSAYDLSGDK+FLEKA+DIADRLLPAWNT TGIPYN+INL 
Sbjct:   170 DKDYDASMFETTIRVVGGLLSAYDLSGDKMFLEKAKDIADRLLPAWNTPTGIPYNIINLR 229

Query:   227 HGNPHNPSWT-GGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPADGLL 285
             +GN HNPSW  GG+SILADSGTEQLE IALSQRTGDPKY+QK EKVI ELNK FPADGLL
Sbjct:   230 NGNAHNPSWAAGGDSILADSGTEQLEFIALSQRTGDPKYQQKVEKVITELNKNFPADGLL 289

Query:   286 PIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLV 345
             PIYI+PD   PSYST TFGAMGDSFYEYLLKVW+QGNKTSAVKPYRDMWE SMKGLLSLV
Sbjct:   290 PIYINPDNANPSYSTTTFGAMGDSFYEYLLKVWVQGNKTSAVKPYRDMWEKSMKGLLSLV 349

Query:   346 RRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTC 405
             ++STPSSFTYICEKNG++LIDKMDELACFAPGM+ALG+SGYGP + +KFLSLA ELAWTC
Sbjct:   350 KKSTPSSFTYICEKNGNNLIDKMDELACFAPGMLALGASGYGPDEEKKFLSLAGELAWTC 409

Query:   406 YNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNI 465
             YNFYQSTPTKLAGENYFF  GQDMSVGTSWNILRPETVESLFYLWRLTGNKTY+EWGWNI
Sbjct:   410 YNFYQSTPTKLAGENYFFTAGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYQEWGWNI 469

Query:   466 FQAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNT 525
             FQAFEKNSR+ESGYVGLKDVNTG KDN MQSFFLAETLKYLYLLFSP++VISLDEWVFNT
Sbjct:   470 FQAFEKNSRVESGYVGLKDVNTGAKDNKMQSFFLAETLKYLYLLFSPSSVISLDEWVFNT 529

Query:   526 EAHPLKIVTQHDGEISGRSDGQHRPNIRLRGRKGGRFID 564
             EAHPLKIV ++D           +P I LR RK G  I+
Sbjct:   530 EAHPLKIVARND---------PRKPTIALRQRKFGHQIN 559
GO:0004571 "mannosyl-oligosaccharide 1,2-alpha-mannosidase activity" evidence=IEA
GO:0005509 "calcium ion binding" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0005886 "plasma membrane" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0004559 "alpha-mannosidase activity" evidence=IDA
GO:0006491 "N-glycan processing" evidence=IGI;IMP
GO:0048364 "root development" evidence=IGI
GO:0009735 "response to cytokinin stimulus" evidence=RCA
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0043248 "proteasome assembly" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2092965 MNS2 "alpha-mannosidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0259170 alpha-Man-I "alpha Mannosidase I" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:104677 Man1a "mannosidase 1, alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1P0Z9 MAN1C1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041014-321 man1a1 "mannosidase, alpha, class 1A, member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1563595 Man1b1 "mannosidase, alpha, class 1B, member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SAY6 MAN1A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDC8 MAN1A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQK8 MAN1A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C512MNS1_ARATH3, ., 2, ., 1, ., 1, 1, 30.72230.94200.9571yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.1130.979
3rd Layer3.2.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query569
pfam01532445 pfam01532, Glyco_hydro_47, Glycosyl hydrolase fami 1e-178
PTZ00470522 PTZ00470, PTZ00470, glycoside hydrolase family 47 1e-176
COG1331667 COG1331, COG1331, Highly conserved protein contain 2e-04
>gnl|CDD|216556 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 47 Back     alignment and domain information 
 Score =  510 bits (1317), Expect = e-178
 Identities = 216/452 (47%), Positives = 269/452 (59%), Gaps = 44/452 (9%)

Query: 118 AMIHAWSSYEKYAWGQDELQLLYSMCLFWRISDYS--------------FSSEFM----W 159
           A +HAW  Y+KYAWG DEL+ +           +                + EF     W
Sbjct: 1   AFLHAWDGYKKYAWGHDELRPISCRGRDSFG-GWGATLVDSLDTLYIMGLTDEFEEAVDW 59

Query: 160 IANSLDFNK-SYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGI 218
           +   LDF+K S D SVFETTIR +GGLLSAYDLSGD + LEKA D+ADRLLPA++T TGI
Sbjct: 60  VEKKLDFDKDSTDVSVFETTIRYLGGLLSAYDLSGDDLLLEKAVDLADRLLPAFDTPTGI 119

Query: 219 PYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKT 278
           PY  +NL  G        GG S LA++GT QLE   LSQ TGDPKY   AE+V+  L K+
Sbjct: 120 PYPRVNLGKG--GVNPVAGGASSLAEAGTLQLEFTRLSQLTGDPKYEDAAERVMDALWKS 177

Query: 279 FPA--DGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWET 336
                 GL+PI+I P  G  +   IT GA GDS+YEYLLK +I          Y DM++ 
Sbjct: 178 QSRSLPGLVPIFIDPSTGQFTGGDITLGAGGDSYYEYLLKQYILLGGKDPQ--YLDMYDE 235

Query: 337 SMKGLL--SLVRRSTPSSFTYICE---KNGDSLIDKMDELACFAPGMIALGSSGYGPGDS 391
           +M  +    L R STPS   ++ E     G  L  KMD L CFA G++ALG+    P   
Sbjct: 236 AMDAIKKHLLFRPSTPSDLLFVGELSSGGGGELSPKMDHLVCFAGGLLALGAKLGLPDKG 295

Query: 392 EKFLSLAEELAWTCYNFYQSTPTKLAGENYFF---------RDGQDMSVGTSWNILRPET 442
           +  L LAEEL  TCY  Y+STPT L  E ++F         +    + +  S  +LRPET
Sbjct: 296 D--LELAEELTDTCYKMYKSTPTGLGPEIFYFNPCPCWDEDKWDFYVKIADSHYLLRPET 353

Query: 443 VESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNT--GDKDNMMQSFFLA 500
           +ESLFYL+RLTG+  Y+EWGW IFQA EK +R   GY G+KDV T   +  + M+SF+LA
Sbjct: 354 IESLFYLYRLTGDPKYREWGWEIFQAIEKYTRTPCGYAGIKDVTTPPPEPRDRMESFWLA 413

Query: 501 ETLKYLYLLFSPTTVISLDEWVFNTEAHPLKI 532
           ETLKYLYLLFS   ++SLDEWVFNTEAHPL I
Sbjct: 414 ETLKYLYLLFSDDDLLSLDEWVFNTEAHPLPI 445

Members of this family are alpha-mannosidases that catalyze the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2). Length = 445
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>gnl|CDD|224250 COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 569
KOG2431546 consensus 1, 2-alpha-mannosidase [Carbohydrate tra 100.0
PTZ00470522 glycoside hydrolase family 47 protein; Provisional 100.0
KOG2204625 consensus Mannosyl-oligosaccharide alpha-1,2-manno 100.0
PF01532452 Glyco_hydro_47: Glycosyl hydrolase family 47; Inte 100.0
KOG2429 622 consensus Glycosyl hydrolase, family 47 [Carbohydr 100.0
KOG2430587 consensus Glycosyl hydrolase, family 47 [Carbohydr 100.0
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 98.5
KOG2204 625 consensus Mannosyl-oligosaccharide alpha-1,2-manno 98.26
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 98.15
COG1331667 Highly conserved protein containing a thioredoxin 97.58
PF07944520 DUF1680: Putative glycosyl hydrolase of unknown fu 97.41
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 97.08
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 96.75
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 96.69
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 96.57
PTZ00470522 glycoside hydrolase family 47 protein; Provisional 96.52
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 96.23
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 95.42
COG1331667 Highly conserved protein containing a thioredoxin 94.85
PF01532452 Glyco_hydro_47: Glycosyl hydrolase family 47; Inte 94.27
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 93.0
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 92.91
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 92.84
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 92.69
COG3533589 Uncharacterized protein conserved in bacteria [Fun 91.01
KOG2429 622 consensus Glycosyl hydrolase, family 47 [Carbohydr 90.26
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 89.03
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 89.01
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 88.24
PF06917 557 Pectate_lyase_2: Periplasmic pectate lyase; InterP 87.67
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 87.07
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 86.39
KOG2430587 consensus Glycosyl hydrolase, family 47 [Carbohydr 86.08
PF06662189 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; I 82.25
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-139  Score=1080.01  Aligned_cols=420  Identities=50%  Similarity=0.847  Sum_probs=396.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhhccCchhhhH---------------------HHHhcCCCCCChhHHHHHHHHHHhhcC
Q 008341          107 IDIQRKQKVKDAMIHAWSSYEKYAWGQDELQL---------------------LYSMCLFWRISDYSFSSEFMWIANSLD  165 (569)
Q Consensus       107 ~~~~rr~~Vk~af~haw~~Y~~~Awg~DEL~P---------------------L~IMgl~~~~~~eEF~~A~~~V~~~ld  165 (569)
                      ..++||++|++||.|||.+|+|||||||||+|                     ++||||     ++||++|++||.++++
T Consensus        90 g~nerq~avv~aF~haW~gYkKyawGhD~l~Pvs~~~~d~fglGltiVDslDT~~iMgl-----e~e~~ea~~Wv~~~L~  164 (546)
T KOG2431|consen   90 GLNERQKAVVDAFLHAWSGYKKYAWGHDELKPVSQSFSDWFGLGLTIVDSLDTAMIMGL-----EDEFEEAREWVEKKLH  164 (546)
T ss_pred             chhHHHHHHHHHHHHHHhhhhhhcccccccccchhcccccccccceEEechhHHHHhhh-----HHHHHHHHHHHHhhcc
Confidence            47999999999999999999999999999999                     899999     9999999999999999


Q ss_pred             CCCCccccccchhhhhccccceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCcccccc
Q 008341          166 FNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADS  245 (569)
Q Consensus       166 F~~~~~vsvFEttIR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~  245 (569)
                      |+++++||+||||||+||||||||+|||+.+||+||+||||||+|||.+||+|||+.||+.+|.+.+|+|+ +.|++||+
T Consensus       165 f~~~~~VNlFEtTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~-~~SStaEv  243 (546)
T KOG2431|consen  165 FEKDRDVNLFETTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWT-GDSSTAEV  243 (546)
T ss_pred             cccccceehhhhhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCC-Cccchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998 68999999


Q ss_pred             ccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCC--CCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCC
Q 008341          246 GTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPA--DGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNK  323 (569)
Q Consensus       246 GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~--~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~  323 (569)
                      +|+||||.+||++|||+||++.|++++++|++....  +||+|++||++||.|..+.|++||+||||||||||+|||+|+
T Consensus       244 ttiQlEfr~Ls~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvPi~in~~tG~F~~~tI~lGaRgDSyYEYLlKQwlQtg~  323 (546)
T KOG2431|consen  244 TTIQLEFRYLSRLTGDPKYEELAEKVTEHIHGLGKKKHDGLVPIFINPNTGLFVGSTITLGARGDSYYEYLLKQWLQTGK  323 (546)
T ss_pred             eeeeeeHHHHHhhcCCchHHHHHHHHHHHHhccCccccCCeeeEEEcCCCCccccceEEeccccchHHHHHHHHHHHccc
Confidence            999999999999999999999999999999995443  699999999999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHH-hccccCCCCCeeeeccCCC-cccccccccccccchhhhhhcCCCCCCCchHHHHHHHHH
Q 008341          324 TSAVKPYRDMWETSMKGLLS-LVRRSTPSSFTYICEKNGD-SLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEEL  401 (569)
Q Consensus       324 ~~~~~~~~~my~~a~~~i~~-ll~~~~~~~~~~v~~~~g~-~~~~~m~hLsCF~pGmlaLGa~~~~~~~~~~~l~lA~~L  401 (569)
                      +.  +.++++|.+||++|++ |++.+.|+++.||+|..+| ++.++||||.||+||+|+||+...-+ ..++++++|++|
T Consensus       324 ~~--~~l~~dy~~am~gv~~~Llr~S~P~~~~fiGEl~~G~~fsPKMDHLVCFlpGtL~lG~~~Gl~-~~~~hl~lA~~l  400 (546)
T KOG2431|consen  324 SL--TYLRDDYIEAMEGVRKHLLRQSKPNKLWFIGELPHGLQFSPKMDHLVCFLPGTLALGSTNGLP-ASEEHLELAQEL  400 (546)
T ss_pred             ch--hHHHHHHHHHHHHHHHHHHhcCCCcceEEEEecccccccCcccceEEEeecchhhhccccCCC-cchHHHHHHHHH
Confidence            98  8999999999999998 5577789999999998665 78999999999999999999976432 345899999999


Q ss_pred             HHHHHHhhccCCCCccceeEeecCCCc-------cccccCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHcc
Q 008341          402 AWTCYNFYQSTPTKLAGENYFFRDGQD-------MSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSR  474 (569)
Q Consensus       402 ~~tC~~~y~~t~tGl~PE~~~f~~~~~-------~~~~~~~y~LRPE~IESlfyLyR~TGD~~yre~gW~if~ai~k~~r  474 (569)
                      ++|||+||..+||||+||++.|+..+.       +++.|++++||||+|||+|||||+|||.|||||||+|||+|++++|
T Consensus       401 ~~TCyqMY~~~~TGLaPEIv~Fn~~~~~~~~DiyvKp~D~HnLlRPEtVESlfylYriT~D~kYqewGW~if~sfekytr  480 (546)
T KOG2431|consen  401 METCYQMYRQNPTGLAPEIVHFNLYPQPGKNDIYVKPLDRHNLLRPETVESLFYLYRITGDRKYQEWGWEIFQSFEKYTR  480 (546)
T ss_pred             HHHHHHHHccCcCCCCceEEEEeccCCCccCceeeccchhhcccChHHHhhhheeeEecCCchHHHHhHHHHHHHHHhcc
Confidence            999999999999999999999986432       4578999999999999999999999999999999999999999999


Q ss_pred             cCc-CccccccCCCC--CCCCCcchHHHHHHHHHHHHhcCCC-CccCCCCeeeccCCCccccccC
Q 008341          475 IES-GYVGLKDVNTG--DKDNMMQSFFLAETLKYLYLLFSPT-TVISLDEWVFNTEAHPLKIVTQ  535 (569)
Q Consensus       475 ~~~-Gya~l~dV~~~--~~~D~meSFflaETLKYLYLLFsd~-~~isLd~~VFnTEaHPl~i~~~  535 (569)
                      +++ ||++|.||.+.  .++|+|||||||||||||||||+|+ +.++||+||||||||||||...
T Consensus       481 v~~ggytSi~nV~~~~~~~RDkMESF~laETLKYLYLLf~DD~~ilpLdk~VFNTEaHPlPi~~~  545 (546)
T KOG2431|consen  481 VPSGGYTSIDNVKDQKPKRRDKMESFWLAETLKYLYLLFSDDQSILPLDKWVFNTEAHPLPIYDN  545 (546)
T ss_pred             cCCCCccchhhhhhcCCchhhhHHHHHHHHHHHHHHHhhcCCcccccchheEeccCCCCCCCCCC
Confidence            999 89999999763  4599999999999999999999999 8899999999999999999753

>PTZ00470 glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PTZ00470 glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query569
1nxc_A478 Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia R 4e-93
1fmi_A458 Crystal Structure Of Human Class I Alpha1,2-Mannosi 4e-86
1fo2_A460 Crystal Structure Of Human Class I Alpha1,2-Mannosi 1e-85
1x9d_A538 Crystal Structure Of Human Class I Alpha-1,2-Mannos 1e-85
1dl2_A511 Crystal Structure Of Class I Alpha-1,2-Mannosidase 3e-62
1g6i_A545 Crystal Structure Of The Yeast Alpha-1,2-Mannosidas 7e-62
1kkt_A511 Structure Of P. Citrinum Alpha 1,2-Mannosidase Reve 1e-45
2ri8_A475 Penicillium Citrinum Alpha-1,2-Mannosidase Complex 2e-45
1hcu_A503 Alpha-1,2-Mannosidase From Trichoderma Reesei Lengt 1e-37
4ayo_A447 Structure Of The Gh47 Processing Alpha-1,2-mannosid 5e-31
>pdb|1NXC|A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals The Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases) Length = 478 Back     alignment and structure 
Iteration: 1

 Score =  338 bits (868), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 186/461 (40%), Positives = 270/461 (58%), Gaps = 30/461 (6%)
Query: 110 QRKQKVKDAMIHAWSSYEKYAWGQDELQLL----YSMCLFWRISDYS------------F 153
           +++ K+K+ M HAW++Y++YAWG +EL+ +    +S  LF  I   +             
Sbjct: 19  EKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNIKGATIVDALDTLFIMGM 78
Query: 154 SSEFM----WIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLL 209
            +EF     WI   LDFN + + SVFE  IR VGGLLSAY LSG+++F +KA ++  +LL
Sbjct: 79  KTEFQEAKSWIKKYLDFNVNAEVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLL 138
Query: 210 PAWNTRTGIPYNVINLAHGNPHNPSW-TGGESILADSGTEQLELIALSQRTGDPKYRQKA 268
           PA++T +GIP+ ++N+  G   N  W +GG SILA+ GT  LE + LS  +GDP + +K 
Sbjct: 139 PAFHTPSGIPWALLNMKSGIGRNWPWASGGSSILAEFGTLHLEFMHLSHLSGDPVFAEKV 198
Query: 269 EKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVK 328
            K+   LNK    +GL P Y++P  G      ++ G +GDSFYEYLLK W+  +KT    
Sbjct: 199 MKIRTVLNKLDKPEGLYPNYLNPSSGQWGQHHVSVGGLGDSFYEYLLKAWLMSDKTDLEA 258
Query: 329 PYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGP 388
             + M+  +++ + + + R +    TYI E  G  L  KM  L CFA GM ALG+ G   
Sbjct: 259 --KKMYFDAVQAIETHLIRKSSGGLTYIAEWKGGLLEHKMGHLTCFAGGMFALGADGAPE 316
Query: 389 GDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWN----ILRPETVE 444
             ++ +L L  E+A TC+  Y  T  KL  E + F DG   ++ T  N    ILRPE +E
Sbjct: 317 ARAQHYLELGAEIARTCHESYNRTYVKLGPEAFRF-DGGVEAIATRQNEKYYILRPEVIE 375
Query: 445 SLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDK--DNMMQSFFLAET 502
           +  Y+WRLT +  Y+ W W   +A E + R+  GY GL+DV    +  D++ QSFFLAET
Sbjct: 376 TYMYMWRLTHDPKYRTWAWEAVEALESHCRVNGGYSGLRDVYIARESYDDVQQSFFLAET 435
Query: 503 LKYLYLLFSPTTVISLDEWVFNTEAHPLKIVTQHDGEISGR 543
           LKYLYL+FS   ++ L+ W+FNTEAHP  I+ +   EI G+
Sbjct: 436 LKYLYLIFSDDDLLPLEHWIFNTEAHPFPILREQKKEIDGK 476
>pdb|1FMI|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase Length = 458 Back     alignment and structure
>pdb|1FO2|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In Complex With 1-Deoxymannojirimycin Length = 460 Back     alignment and structure
>pdb|1X9D|A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue Length = 538 Back     alignment and structure
>pdb|1DL2|A Chain A, Crystal Structure Of Class I Alpha-1,2-Mannosidase From Saccharomyces Cerevisiae At 1.54 Angstrom Resolution Length = 511 Back     alignment and structure
>pdb|1G6I|A Chain A, Crystal Structure Of The Yeast Alpha-1,2-Mannosidase With Bound 1- Deoxymannojirimycin At 1.59 A Resolution Length = 545 Back     alignment and structure
>pdb|1KKT|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The Basis For Differences In Specificity Of The Er And Golgi Class I Enzymes Length = 511 Back     alignment and structure
>pdb|2RI8|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With Glycerol Length = 475 Back     alignment and structure
>pdb|1HCU|A Chain A, Alpha-1,2-Mannosidase From Trichoderma Reesei Length = 503 Back     alignment and structure
>pdb|4AYO|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase From Caulobacter Strain K31 Length = 447 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query569
1nxc_A478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 1e-179
2ri9_A475 Mannosyl-oligosaccharide alpha-1,2-mannosidase; al 1e-160
1hcu_A503 Alpha-1,2-mannosidase; glycosylation, glycosyl hyd 1e-159
1x9d_A538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 1e-159
1dl2_A511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 1e-158
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Length = 478 Back     alignment and structure
 Score =  512 bits (1320), Expect = e-179
 Identities = 184/467 (39%), Positives = 266/467 (56%), Gaps = 28/467 (5%)

Query: 104 EDPIDIQRKQKVKDAMIHAWSSYEKYAWGQDELQLL----YSMCLFWRISDYS------- 152
            D    +++ K+K+ M HAW++Y++YAWG +EL+ +    +S  LF  I   +       
Sbjct: 13  ADATIREKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNIKGATIVDALDT 72

Query: 153 -----FSSEFM----WIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARD 203
                  +EF     WI   LDFN + + SVFE  IR VGGLLSAY LSG+++F +KA +
Sbjct: 73  LFIMGMKTEFQEAKSWIKKYLDFNVNAEVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVE 132

Query: 204 IADRLLPAWNTRTGIPYNVINLAHGNPHNPSWT-GGESILADSGTEQLELIALSQRTGDP 262
           +  +LLPA++T +GIP+ ++N+  G   N  W  GG SILA+ GT  LE + LS  +GDP
Sbjct: 133 LGVKLLPAFHTPSGIPWALLNMKSGIGRNWPWASGGSSILAEFGTLHLEFMHLSHLSGDP 192

Query: 263 KYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGN 322
            + +K  K+   LNK    +GL P Y++P  G      ++ G +GDSFYEYLLK W+  +
Sbjct: 193 VFAEKVMKIRTVLNKLDKPEGLYPNYLNPSSGQWGQHHVSVGGLGDSFYEYLLKAWLMSD 252

Query: 323 KTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALG 382
           KT      + M+  +++ + + + R +    TYI E  G  L  KM  L CFA GM ALG
Sbjct: 253 KTDLE--AKKMYFDAVQAIETHLIRKSSGGLTYIAEWKGGLLEHKMGHLTCFAGGMFALG 310

Query: 383 SSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDM---SVGTSWNILR 439
           + G     ++ +L L  E+A TC+  Y  T  KL  E + F  G +         + ILR
Sbjct: 311 ADGAPEARAQHYLELGAEIARTCHESYNRTYVKLGPEAFRFDGGVEAIATRQNEKYYILR 370

Query: 440 PETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGD--KDNMMQSF 497
           PE +E+  Y+WRLT +  Y+ W W   +A E + R+  GY GL+DV       D++ QSF
Sbjct: 371 PEVIETYMYMWRLTHDPKYRTWAWEAVEALESHCRVNGGYSGLRDVYIARESYDDVQQSF 430

Query: 498 FLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIVTQHDGEISGRS 544
           FLAETLKYLYL+FS   ++ L+ W+FNTEAHP  I+ +   EI G+ 
Sbjct: 431 FLAETLKYLYLIFSDDDLLPLEHWIFNTEAHPFPILREQKKEIDGKE 477
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A* Length = 475 Back     alignment and structure
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1 Length = 503 Back     alignment and structure
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538 Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Length = 511 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query569
1nxc_A478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 100.0
1x9d_A538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 100.0
1hcu_A503 Alpha-1,2-mannosidase; glycosylation, glycosyl hyd 100.0
2ri9_A475 Mannosyl-oligosaccharide alpha-1,2-mannosidase; al 100.0
1dl2_A511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 100.0
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 98.3
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 97.92
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 97.84
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 97.66
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 97.58
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 97.48
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 97.46
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 97.35
1nc5_A373 Hypothetical protein YTER; structural genomics, he 97.26
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 97.15
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 97.13
1nc5_A373 Hypothetical protein YTER; structural genomics, he 97.07
3pmm_A382 Putative cytoplasmic protein; structural genomics, 97.05
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 96.93
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 96.71
1x9d_A 538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 96.52
1dl2_A 511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 96.14
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 95.54
2ri9_A475 Mannosyl-oligosaccharide alpha-1,2-mannosidase; al 95.51
1nxc_A 478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 95.19
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 94.99
1hcu_A503 Alpha-1,2-mannosidase; glycosylation, glycosyl hyd 94.6
3k11_A445 Putative glycosyl hydrolase; structural genomics, 94.21
3pmm_A382 Putative cytoplasmic protein; structural genomics, 92.02
2v8i_A 543 Pectate lyase; periplasm, beta-elimination, pectin 87.3
3k11_A445 Putative glycosyl hydrolase; structural genomics, 84.5
1kwf_A363 Endoglucanase A; hydrolase, inverting glycosidase, 84.49
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Back     alignment and structure
Probab=100.00  E-value=2.7e-141  Score=1149.85  Aligned_cols=430  Identities=41%  Similarity=0.772  Sum_probs=404.2

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhHhhccCchhhhH-------------------------HHHhcCCCCCChhHHHHH
Q 008341          102 FAEDPIDIQRKQKVKDAMIHAWSSYEKYAWGQDELQL-------------------------LYSMCLFWRISDYSFSSE  156 (569)
Q Consensus       102 ~~~~~~~~~rr~~Vk~af~haw~~Y~~~Awg~DEL~P-------------------------L~IMgl~~~~~~eEF~~A  156 (569)
                      .+.++...+||++||+||+|||++|++||||||||+|                         |||||+     ++||++|
T Consensus        11 ~~~~~~~~~rr~~Vk~~F~haw~~Y~~~Awg~DEl~P~S~~g~~~~~fg~~~g~TlVDsLDTL~IMgl-----~~Ef~~A   85 (478)
T 1nxc_A           11 EPADATIREKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNIKGATIVDALDTLFIMGM-----KTEFQEA   85 (478)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEETTTTEEECCGGGTTCCCHHHHHHHHHHHHTTC-----HHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCcCCCccCCcccchheecccceeecCC-----HHHHHHH
Confidence            4457788899999999999999999999999999999                         999999     9999999


Q ss_pred             HHHHHhhcCCCCCccccccchhhhhccccceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCC
Q 008341          157 FMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWT  236 (569)
Q Consensus       157 ~~~V~~~ldF~~~~~vsvFEttIR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~  236 (569)
                      ++||+++++|+++..|||||||||+||||||||+||+|++||+||+||||+||||||||||||+++||+++|.+.++.|.
T Consensus        86 ~~~v~~~l~f~~~~~vsvFETtIR~LGGLLSAy~Lsgd~~lL~kA~dLad~LlpAFdTptgiP~~~vnl~~g~~~~~~~~  165 (478)
T 1nxc_A           86 KSWIKKYLDFNVNAEVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIGRNWPWA  165 (478)
T ss_dssp             HHHHHHHCCCCCSSEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSSSSCCCSEEETTTCCEECCTTS
T ss_pred             HHHHHhhcCccCCCccchhheehhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998877776


Q ss_pred             C-CCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCCCCCcceeecCCCCCCCCCeeeecccCchHHHHHH
Q 008341          237 G-GESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLL  315 (569)
Q Consensus       237 ~-~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLL  315 (569)
                      . +++++||+||++|||++|||+||||+|+++|+++++.|++..+.+||+|++||+.+|+|.+..+++||++|||||||+
T Consensus       166 ~~~~s~lAe~gsl~LEF~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~GL~p~~i~~~tg~~~~~~~~~Ga~~DS~YEYLl  245 (478)
T 1nxc_A          166 SGGSSILAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLYPNYLNPSSGQWGQHHVSVGGLGDSFYEYLL  245 (478)
T ss_dssp             GGGCEEHHHHTTCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCCGGGCCCSEECTTTCCBCSCEECSSTTTHHHHHHHH
T ss_pred             CCCCcccccccchhhhHHHHHHHHCChHHHHHHHHHHHHHHhcCCCCCccccccCCCCCCccCceeeecCCCchHHHHHH
Confidence            3 478999999999999999999999999999999999999987789999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCcchHHHHHHHHHHHHHHhccccCCCCCeeeeccCCCcccccccccccccchhhhhhcCCCCCCCchHHH
Q 008341          316 KVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFL  395 (569)
Q Consensus       316 K~~iL~g~~~~~~~~~~my~~a~~~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLGa~~~~~~~~~~~l  395 (569)
                      |+|+|+|+.+  +.|++||.+||++|++||.+..+++++|+++..++.+.++|+||+||+|||++||++..+....++++
T Consensus       246 K~~il~g~~d--~~~~~m~~~a~~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~l  323 (478)
T 1nxc_A          246 KAWLMSDKTD--LEAKKMYFDAVQAIETHLIRKSSGGLTYIAEWKGGLLEHKMGHLTCFAGGMFALGADGAPEARAQHYL  323 (478)
T ss_dssp             HHHHHTTTCC--HHHHHHHHHHHHHHHHHTEEECTTSCEEECEEETTEEECEEETGGGGHHHHHHHTSTTSCTTCHHHHH
T ss_pred             HHHHHcCCch--HHHHHHHHHHHHHHHHHhcccCCCCcEEEEeccCCcccccccchhhhhHHHHHhccccccccchHHHH
Confidence            9999999999  99999999999999998766667899999999888899999999999999999999887655678999


Q ss_pred             HHHHHHHHHHHHhhccCCCCccceeEeecCCCc---cccccCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Q 008341          396 SLAEELAWTCYNFYQSTPTKLAGENYFFRDGQD---MSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKN  472 (569)
Q Consensus       396 ~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~---~~~~~~~y~LRPE~IESlfyLyR~TGD~~yre~gW~if~ai~k~  472 (569)
                      ++|++|++||+++|.++|||++||+|.|+.+..   ..+.+++|+||||+|||+|||||+||||+||||||+||++|+++
T Consensus       324 ~~a~~l~~tC~~~y~~~~tgl~PE~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~~f~ai~k~  403 (478)
T 1nxc_A          324 ELGAEIARTCHESYNRTYVKLGPEAFRFDGGVEAIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVEALESH  403 (478)
T ss_dssp             HHHHHHHHHHHHHHHTSSSSSCCSEEESSTTCSSBCCSGGGCCBCSCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCeEEEeccCcccccccccccccCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999986532   34578899999999999999999999999999999999999999


Q ss_pred             cccCcCccccccCCC--CCCCCCcchHHHHHHHHHHHHhcCCCCccCCCCeeeccCCCccccccCCCC
Q 008341          473 SRIESGYVGLKDVNT--GDKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIVTQHDG  538 (569)
Q Consensus       473 ~r~~~Gya~l~dV~~--~~~~D~meSFflaETLKYLYLLFsd~~~isLd~~VFnTEaHPl~i~~~~~~  538 (569)
                      |||+|||++|+||+.  +.++|+|||||||||||||||||||+++||||+||||||||||||......
T Consensus       404 ~r~~~G~a~i~dV~~~~~~~~D~meSF~laETLKYlYLLFsd~~~i~ld~~VFnTEAHPl~i~~~~~~  471 (478)
T 1nxc_A          404 CRVNGGYSGLRDVYIARESYDDVQQSFFLAETLKYLYLIFSDDDLLPLEHWIFNTEAHPFPILREQKK  471 (478)
T ss_dssp             TEETTEECCBSCTTSSSCCBCCCBCHHHHHTHHHHHHHHTSCTTSSCTTTEEECTTSCEEECCC----
T ss_pred             hhcccccccccccCCCCCCcCCCCCchHHHHHHHHHHeeccCCccCCCCCeeecCCCCceecCCCCcc
Confidence            999999999999985  456999999999999999999999999999999999999999999876554
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Back     alignment and structure
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1 Back     alignment and structure
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A* Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A* Back     alignment and structure
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1 Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1kwf_A Endoglucanase A; hydrolase, inverting glycosidase, atomic resolution, protein-carbohydrate interactions, reaction mechanism, cellulase; HET: BGC; 0.94A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1is9_A 1cem_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 569
d1nxca_467 a.102.2.1 (A:) Class I alpha-1;2-mannosidase, cata 1e-158
d1x9da1453 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidas 1e-148
d1dl2a_511 a.102.2.1 (A:) Class I alpha-1;2-mannosidase, cata 1e-142
d1hcua_488 a.102.2.1 (A:) Class I alpha-1;2-mannosidase, cata 1e-137
d2ri9a1475 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosid 1e-135
d2d5ja1377 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrola 8e-13
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 467 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Seven-hairpin glycosidases
family: Class I alpha-1;2-mannosidase, catalytic domain
domain: Class I alpha-1;2-mannosidase, catalytic domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  458 bits (1179), Expect = e-158
 Identities = 184/466 (39%), Positives = 263/466 (56%), Gaps = 30/466 (6%)

Query: 96  PPGNKAFAE--DPIDIQRKQKVKDAMIHAWSSYEKYAWGQDELQLL----YSMCLFWRIS 149
           PP      E  D    +++ K+K+ M HAW++Y++YAWG +EL+ +    +S  LF  I 
Sbjct: 3   PPVGVENREPADATIREKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNIK 62

Query: 150 DYS------------FSSEFM----WIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSG 193
             +              +EF     WI   LDFN + + SVFE  IR VGGLLSAY LSG
Sbjct: 63  GATIVDALDTLFIMGMKTEFQEAKSWIKKYLDFNVNAEVSVFEVNIRFVGGLLSAYYLSG 122

Query: 194 DKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWT-GGESILADSGTEQLEL 252
           +++F +KA ++  +LLPA++T +GIP+ ++N+  G   N  W  GG SILA+ GT  LE 
Sbjct: 123 EEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIGRNWPWASGGSSILAEFGTLHLEF 182

Query: 253 IALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYE 312
           + LS  +GDP + +K  K+   LNK    +GL P Y++P  G      ++ G +GDSFYE
Sbjct: 183 MHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLYPNYLNPSSGQWGQHHVSVGGLGDSFYE 242

Query: 313 YLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELA 372
           YLLK W+  +KT      + M+  +++ + + + R +    TYI E  G  L  KM  L 
Sbjct: 243 YLLKAWLMSDKTDLE--AKKMYFDAVQAIETHLIRKSSGGLTYIAEWKGGLLEHKMGHLT 300

Query: 373 CFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDG---QDM 429
           CFA GM ALG+ G     ++ +L L  E+A TC+  Y  T  KL  E + F  G      
Sbjct: 301 CFAGGMFALGADGAPEARAQHYLELGAEIARTCHESYNRTYVKLGPEAFRFDGGVEAIAT 360

Query: 430 SVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGD 489
                + ILRPE +E+  Y+WRLT +  Y+ W W   +A E + R+  GY GL+DV    
Sbjct: 361 RQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVEALESHCRVNGGYSGLRDVYIAR 420

Query: 490 --KDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIV 533
              D++ QSFFLAETLKYLYL+FS   ++ L+ W+FNTEAHP  I+
Sbjct: 421 ESYDDVQQSFFLAETLKYLYLIFSDDDLLPLEHWIFNTEAHPFPIL 466
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 453 Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 511 Back     information, alignment and structure
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Length = 488 Back     information, alignment and structure
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} Length = 475 Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Length = 377 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query569
d1nxca_467 Class I alpha-1;2-mannosidase, catalytic domain {M 100.0
d1hcua_488 Class I alpha-1;2-mannosidase, catalytic domain {T 100.0
d1x9da1453 Class I alpha-1;2-mannosidase, catalytic domain {H 100.0
d2ri9a1475 Class I alpha-1;2-mannosidase, catalytic domain {F 100.0
d1dl2a_511 Class I alpha-1;2-mannosidase, catalytic domain {B 100.0
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 99.23
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 97.52
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 97.43
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 97.34
d1nxca_ 467 Class I alpha-1;2-mannosidase, catalytic domain {M 96.62
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 96.17
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 95.72
d1x9da1 453 Class I alpha-1;2-mannosidase, catalytic domain {H 95.65
d1dl2a_ 511 Class I alpha-1;2-mannosidase, catalytic domain {B 95.62
d2ri9a1475 Class I alpha-1;2-mannosidase, catalytic domain {F 95.27
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 95.2
d1hcua_488 Class I alpha-1;2-mannosidase, catalytic domain {T 93.25
d1kwfa_363 CelA cellulase {Clostridium thermocellum [TaxId: 1 92.03
d1wzza1319 Probable endoglucanase CmcAX {Acetobacter xylinus 90.99
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 87.97
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Seven-hairpin glycosidases
family: Class I alpha-1;2-mannosidase, catalytic domain
domain: Class I alpha-1;2-mannosidase, catalytic domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.4e-134  Score=1091.24  Aligned_cols=426  Identities=42%  Similarity=0.783  Sum_probs=403.2

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhHhhccCchhhhH-------------------------HHHhcCCCCCChhHHHHH
Q 008341          102 FAEDPIDIQRKQKVKDAMIHAWSSYEKYAWGQDELQL-------------------------LYSMCLFWRISDYSFSSE  156 (569)
Q Consensus       102 ~~~~~~~~~rr~~Vk~af~haw~~Y~~~Awg~DEL~P-------------------------L~IMgl~~~~~~eEF~~A  156 (569)
                      .+.++...+||++||+||+|||++|++||||||||+|                         |+|||+     ++||++|
T Consensus        11 ~~~~~~~~~~r~~vk~~F~~aw~~Y~~~a~g~Del~P~s~~~~~~~~~~~~~g~tlvDsLdTL~imgl-----~~ef~~a   85 (467)
T d1nxca_          11 EPADATIREKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNIKGATIVDALDTLFIMGM-----KTEFQEA   85 (467)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEETTTTEEECCGGGTTCCCHHHHHHHHHHHHTTC-----HHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCcCCCCCCCccCCcchhhHHHHHHHHHHcCC-----HHHHHHH
Confidence            4556677899999999999999999999999999999                         999999     9999999


Q ss_pred             HHHHHhhcCCCCCccccccchhhhhccccceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCC
Q 008341          157 FMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWT  236 (569)
Q Consensus       157 ~~~V~~~ldF~~~~~vsvFEttIR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~  236 (569)
                      ++||.++++|++++.|||||||||+||||||||+||+|++||+||+||||+|+||||||||||+++||+++|.+.+..|.
T Consensus        86 ~~~v~~~~~f~~~~~v~vFEt~iR~LGGLlsAy~Ls~d~~~L~kA~~l~~~Ll~aFdtptgiP~~~vn~~~g~~~~~~~~  165 (467)
T d1nxca_          86 KSWIKKYLDFNVNAEVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIGRNWPWA  165 (467)
T ss_dssp             HHHHHHHCCCCCSSEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSSSSCCCSEEETTTCCEECCTTS
T ss_pred             HHHHHHhCCCCCCCccchhhhhhHhhhhHHHHHHhcCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccCcCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998777665


Q ss_pred             -CCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCCCCCcceeecCCCCCCCCCeeeecccCchHHHHHH
Q 008341          237 -GGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLL  315 (569)
Q Consensus       237 -~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLL  315 (569)
                       .+.+++||+||++|||++|||+|||++|+++|+++++.|++..+.+||+|++||+.+|+|++..+++||++||||||||
T Consensus       166 ~~~~~~lAe~gsl~LEf~~Ls~lTGd~~Y~~~a~r~~~~l~~~~~~~GL~p~~id~~tg~~~~~~~~iGa~~DS~YEYLl  245 (467)
T d1nxca_         166 SGGSSILAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLYPNYLNPSSGQWGQHHVSVGGLGDSFYEYLL  245 (467)
T ss_dssp             GGGCEEHHHHTTCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCCGGGCCCSEECTTTCCBCSCEECSSTTTHHHHHHHH
T ss_pred             CCCccchhhhcccchhHHHHHHHHCCHHHHHHHHHHHHHHHhhcCCcccCCceeeCCCCcccCcccccCccchHHHHHHH
Confidence             4578999999999999999999999999999999999999988889999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCcchHHHHHHHHHHHHHHhccccCCCCCeeeeccCCCcccccccccccccchhhhhhcCCCCCCCchHHH
Q 008341          316 KVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFL  395 (569)
Q Consensus       316 K~~iL~g~~~~~~~~~~my~~a~~~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLGa~~~~~~~~~~~l  395 (569)
                      |+|+|+|+.+  ..+++||.+++++|++++...++.+++|+++.+++...++|+||+||+|||++||++..+....++++
T Consensus       246 K~~il~g~~d--~~~~~~~~~a~~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~~hL~cF~~Gll~Lg~~~~~~~~~~~~~  323 (467)
T d1nxca_         246 KAWLMSDKTD--LEAKKMYFDAVQAIETHLIRKSSGGLTYIAEWKGGLLEHKMGHLTCFAGGMFALGADGAPEARAQHYL  323 (467)
T ss_dssp             HHHHHTTTCC--HHHHHHHHHHHHHHHHHTEEECTTSCEEECEEETTEEECEEETGGGGHHHHHHHTSTTSCTTCHHHHH
T ss_pred             HHHHhcCCcc--HHHHHHHHHHHHHHHHHhccCCCCCceeeeccCCCccccchhhHHHHHhHHHHhccccccchhhhHHH
Confidence            9999999999  99999999999999998766667789999999999999999999999999999999877656678999


Q ss_pred             HHHHHHHHHHHHhhccCCCCccceeEeecCCCc---cccccCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Q 008341          396 SLAEELAWTCYNFYQSTPTKLAGENYFFRDGQD---MSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKN  472 (569)
Q Consensus       396 ~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~---~~~~~~~y~LRPE~IESlfyLyR~TGD~~yre~gW~if~ai~k~  472 (569)
                      ++|++|+++|+++|..+++|++||.+.|+.+..   +...+++|+||||+|||+|||||+||||+||||||+||++|+++
T Consensus       324 ~la~~l~~~c~~~y~~~~tgl~pe~~~~~~~~~~~~~~~~~~~y~LRPE~IES~fyLyR~TgD~~yre~gw~~f~~i~~~  403 (467)
T d1nxca_         324 ELGAEIARTCHESYNRTYVKLGPEAFRFDGGVEAIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVEALESH  403 (467)
T ss_dssp             HHHHHHHHHHHHHHHTSSSSSCCSEEESSTTCSSBCCSGGGCCBCSCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhcCCCceeecCCCcccccccCcccccCCcchHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999986532   34578999999999999999999999999999999999999999


Q ss_pred             cccCcCccccccCCCCC--CCCCcchHHHHHHHHHHHHhcCCCCccCCCCeeeccCCCcccccc
Q 008341          473 SRIESGYVGLKDVNTGD--KDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIVT  534 (569)
Q Consensus       473 ~r~~~Gya~l~dV~~~~--~~D~meSFflaETLKYLYLLFsd~~~isLd~~VFnTEaHPl~i~~  534 (569)
                      |||+|||++|+||++..  .+|+|||||||||||||||||||++++|||+||||||||||||.+
T Consensus       404 ~~~~~G~a~i~dV~~~~~~~~D~meSF~laETLKYlYLlFsd~~~i~ld~~VfnTEaHp~~i~~  467 (467)
T d1nxca_         404 CRVNGGYSGLRDVYIARESYDDVQQSFFLAETLKYLYLIFSDDDLLPLEHWIFNTEAHPFPILR  467 (467)
T ss_dssp             TEETTEECCBSCTTSSSCCBCCCBCHHHHHTHHHHHHHHTSCTTSSCTTTEEECTTSCEEECCC
T ss_pred             HccCcccccceeccCCCCCCCCCcccHHHHHHHHHHHHhcCCCCcCCccCEEEcCCCCccCCCC
Confidence            99999999999998754  589999999999999999999999999999999999999999863
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1kwfa_ a.102.1.2 (A:) CelA cellulase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1wzza1 a.102.1.2 (A:23-341) Probable endoglucanase CmcAX {Acetobacter xylinus [TaxId: 28448]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure