Citrus Sinensis ID: 008342
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 569 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZF1 | 569 | Acetate/butyrate--CoA lig | yes | no | 0.980 | 0.980 | 0.725 | 0.0 | |
| F4HUK6 | 556 | Probable acyl-activating | no | no | 0.938 | 0.960 | 0.516 | 1e-161 | |
| Q9SEY5 | 603 | Probable acyl-activating | no | no | 0.966 | 0.912 | 0.489 | 1e-154 | |
| Q9FFE9 | 550 | Probable acyl-activating | no | no | 0.952 | 0.985 | 0.495 | 1e-154 | |
| Q9FFE6 | 552 | Probable acyl-activating | no | no | 0.959 | 0.989 | 0.483 | 1e-153 | |
| Q9C8D4 | 572 | Butyrate--CoA ligase AAE1 | no | no | 0.954 | 0.949 | 0.480 | 1e-146 | |
| Q9LPK7 | 549 | Probable acyl-activating | no | no | 0.938 | 0.972 | 0.475 | 1e-145 | |
| Q9SS01 | 580 | Benzoate--CoA ligase, per | no | no | 0.954 | 0.936 | 0.466 | 1e-145 | |
| Q9LQS1 | 544 | Probable acyl-activating | no | no | 0.950 | 0.994 | 0.478 | 1e-145 | |
| Q9LPK6 | 550 | Probable acyl-activating | no | no | 0.940 | 0.972 | 0.475 | 1e-144 |
| >sp|Q8VZF1|AEE7_ARATH Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana GN=AAE7 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/558 (72%), Positives = 474/558 (84%)
Query: 5 KDIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSK 64
+DIDDLPKI ANYTALTPLWF++RAA +HPTRKSV++GS+ YTW QTY RCRR ASAL+
Sbjct: 7 RDIDDLPKIPANYTALTPLWFLDRAAVVHPTRKSVIHGSREYTWRQTYDRCRRLASALAD 66
Query: 65 LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVD 124
SIG G+TV++IAPN+PAMYEA FG PM GAVLN +NIRLNA VAF+LSH+ S+V++VD
Sbjct: 67 RSIGPGSTVAIIAPNIPAMYEAHFGVPMCGAVLNCVNIRLNAPTVAFLLSHSQSSVIMVD 126
Query: 125 QEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP 184
QEFF+LAE++L++ME + K P LIVIGD +C + L AL++GAIEYE FL TGDP
Sbjct: 127 QEFFTLAEDSLRLMEEKAGSSFKRPLLIVIGDHTCAPESLNRALSKGAIEYEDFLATGDP 186
Query: 185 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP 244
+ W+PP DEWQSIALGYTSGTTASPKGVV+ HRGAY+M+L+ LIWGM +GAV+LWTLP
Sbjct: 187 NYPWQPPADEWQSIALGYTSGTTASPKGVVLHHRGAYIMALSNPLIWGMQDGAVYLWTLP 246
Query: 245 MFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED 304
MFH NGW + WSLA L GTSICLRQVTAK VY+ IA + VTHFCAAPVVLNAI NA ED
Sbjct: 247 MFHCNGWCFPWSLAVLSGTSICLRQVTAKEVYSMIAKYKVTHFCAAPVVLNAIVNAPKED 306
Query: 305 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPF 364
TILPL + V+V TAGA PPPS+LF+M+QKGFR+ HTYGL+E GP++VCAWKPEWDSLP
Sbjct: 307 TILPLPHTVHVMTAGAAPPPSVLFSMNQKGFRVAHTYGLSETYGPSTVCAWKPEWDSLPP 366
Query: 365 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424
ETQA+LNARQGVR ++ LDVID +T +PVPADGKT GEIV RG+ VMKGYLKNP+AN+
Sbjct: 367 ETQAKLNARQGVRYTGMEQLDVIDTQTGKPVPADGKTAGEIVFRGNMVMKGYLKNPEANK 426
Query: 425 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484
E FA GWFHSGD+AVKHPDNYIEIKDR KDVIISGGENISSVEVE V+Y HP VLEA+VV
Sbjct: 427 ETFAGGWFHSGDIAVKHPDNYIEIKDRSKDVIISGGENISSVEVENVVYHHPAVLEASVV 486
Query: 485 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSAT 544
ARPDERW ESPCAFVTLK + ++ D+ KLA+D+ KFCR K+P+YWVPKSVVF LPK+AT
Sbjct: 487 ARPDERWQESPCAFVTLKSDYEKHDQNKLAQDIMKFCREKLPAYWVPKSVVFGPLPKTAT 546
Query: 545 GKIQKHLLRAKAKEMGPV 562
GKIQKH+LR KAKEMGPV
Sbjct: 547 GKIQKHILRTKAKEMGPV 564
|
Peroxisomal acetate/butyrate--CoA ligase that is probably involved in the activation of exogenous acetate for entry into the glyoxylate cycle. May play a role to prevent carbon loss from peroxisomes during lipid mobilization. In vitro, is active with both acetate and butyrate. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 2 |
| >sp|F4HUK6|AAE1_ARATH Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 568 bits (1464), Expect = e-161, Method: Compositional matrix adjust.
Identities = 285/552 (51%), Positives = 371/552 (67%), Gaps = 18/552 (3%)
Query: 12 KISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGT 71
K ANY LTP+ F++R+A ++ R S+VYGS YTW QT RC R ASALS+L I G
Sbjct: 8 KSPANYVPLTPISFLDRSAVVYADRVSIVYGSVKYTWRQTRDRCVRIASALSQLGISTGD 67
Query: 72 TVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLA 131
VSV+APNVPAM E FG PMAGA+L ++NIR ++++VA +L H+ + V+ D +F +A
Sbjct: 68 VVSVLAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQFLQIA 127
Query: 132 EEALKMMEANSEGKLKTPHLIVIGD---ESCDSKQLEYALARGAIEYEKFLETGDPEFAW 188
E A +++ + K P L++I + +S K+ + +EYE + G +F
Sbjct: 128 EGACEILSNKGD---KVPILVLIPEPLTQSVSRKKRSEEM----MEYEDVVAMGKSDFEV 180
Query: 189 KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 248
P DE +I++ YTSGTT+SPKGVV SHRGAYL SL L+ M+ +LWT PMFH
Sbjct: 181 IRPTDECDAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNPMFHC 240
Query: 249 NGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP 308
NGW W + A+ GT+ICLR VTAKA++ I+ H VTH AP +LN I NA PE P
Sbjct: 241 NGWCLLWGVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIINA-PESEQKP 299
Query: 309 LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQA 368
L V+ T APPP ++F M + GF + H+YGLTE GP ++C WKPEWDSLP E QA
Sbjct: 300 LPGKVSFITGAAPPPAHVIFKMEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQA 359
Query: 369 RLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 428
++ ARQGV + L+ + V D T + +PADG T+GE+V RG+ VM GYLKNP+A +EAF
Sbjct: 360 KMKARQGVNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFK 419
Query: 429 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488
GWF SGDL VKHPD YIE+KDR KD+IISGGENISS+EVE L+ HP VLEAAVVARPD
Sbjct: 420 GGWFWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPD 479
Query: 489 ERWGESPCAFVTLKPEADELDKGKL-AEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKI 547
E WGE+ CAFV LK D K AE++ +CR ++P Y P+S+VF LPK++TGK+
Sbjct: 480 EYWGETACAFVKLK------DGSKASAEELISYCRDRLPHYMAPRSIVFEDLPKTSTGKV 533
Query: 548 QKHLLRAKAKEM 559
QK +LR KAK +
Sbjct: 534 QKFVLRTKAKAL 545
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SEY5|AAE2_ARATH Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 546 bits (1408), Expect = e-154, Method: Compositional matrix adjust.
Identities = 275/562 (48%), Positives = 370/562 (65%), Gaps = 12/562 (2%)
Query: 5 KDIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSK 64
+ I+ L + AN++ L+P+ F+ R+A ++ R S+V+GS +TW QTY+RC R ASAL+
Sbjct: 46 RTIEGLLRSPANFSPLSPITFLERSAKVYRDRTSLVFGSVKHTWFQTYQRCLRLASALTN 105
Query: 65 LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVD 124
L I G V+ +APNVPAM+E F PMAG +L +N RL+ + ++ +L+H+ + ++ VD
Sbjct: 106 LGISRGDVVAALAPNVPAMHELHFAVPMAGLILCPLNTRLDPSTLSVLLAHSEAKILFVD 165
Query: 125 QEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGA------IEYEKF 178
+ +A AL ++ A S+ K+ L++I + D E + + A EYE
Sbjct: 166 HQLLEIAHGALDLL-AKSDKTRKSLKLVLISQSNDDDDSDEDSSSTFASKYSFDYEYETL 224
Query: 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAV 238
L++GD EF P EW I++ YTSGTT+ PKGVV SHRGAYL SL + M+ V
Sbjct: 225 LKSGDSEFEIIKPRCEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVFLHQMSVYPV 284
Query: 239 FLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIA 298
+LWT+PMFH NGW W +AA GT+ICLR+V+ K ++ IA H VTH AP VLN I
Sbjct: 285 YLWTVPMFHCNGWCLVWGVAAQGGTNICLRKVSPKMIFKNIAMHKVTHMGGAPTVLNMIV 344
Query: 299 NASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPE 358
N + + PL + V + T G+PP P +L M + GF ++H YGLTE GP + C WKPE
Sbjct: 345 NYTVTEH-KPLPHRVEIMTGGSPPLPQILAKMEELGFNVSHLYGLTETYGPGTHCVWKPE 403
Query: 359 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 418
WDSL E + +L ARQGV+ + L+GLDV D T + VP DG T+GE++ RG+ VM GY K
Sbjct: 404 WDSLSLEERTKLKARQGVQHLGLEGLDVKDPLTMETVPDDGLTMGEVMFRGNTVMSGYFK 463
Query: 419 NPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLV 478
+ +A +AF WFHSGDLAVK+PD YIEIKDRLKDVIISGGENISSVEVE+VL H V
Sbjct: 464 DIEATRKAFEGDWFHSGDLAVKYPDGYIEIKDRLKDVIISGGENISSVEVERVLCSHQAV 523
Query: 479 LEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA 538
LEAAVVARPD WG++PC FV LK D + E++ FCR +P Y PK++VF
Sbjct: 524 LEAAVVARPDHHWGQTPCGFVKLKEGFDTIK----PEEIIGFCRDHLPHYMAPKTIVFGD 579
Query: 539 LPKSATGKIQKHLLRAKAKEMG 560
+PK++TGK+QK+LLR KA EMG
Sbjct: 580 IPKTSTGKVQKYLLRKKADEMG 601
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FFE9|AAE6_ARATH Probable acyl-activating enzyme 6 OS=Arabidopsis thaliana GN=AAE6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 545 bits (1403), Expect = e-154, Method: Compositional matrix adjust.
Identities = 276/557 (49%), Positives = 369/557 (66%), Gaps = 15/557 (2%)
Query: 7 IDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKH-YTWHQTYRRCRRFASALSKL 65
++++ +AN LTP+ F+ RAAT++ S+VYGS YTW +T RC R AS+LS +
Sbjct: 1 MEEMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSI 60
Query: 66 SIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 125
IG VSV++PN PAMYE QF PM+GA+LN+IN RL+A V+ +L H S ++ VD
Sbjct: 61 GIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDV 120
Query: 126 EFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA-LARGAIEYEKFLETGDP 184
LA EA+ MM + P L+VI D+ + + A L++ + Y+ +E GDP
Sbjct: 121 FSVDLAVEAVSMMTTDP------PILVVIADKEEEGGVADVADLSKFSYTYDDLIERGDP 174
Query: 185 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP 244
F W PE EW + L YTSGTT++PKGVV HRG ++MS++ + W + + V+LWTLP
Sbjct: 175 GFKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSVDSLIDWAVPKNPVYLWTLP 234
Query: 245 MFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED 304
+FH NGW+ W +AA+ GT++CLR+ A +Y I HGVTH C APVVLN ++ A+ E
Sbjct: 235 IFHSNGWTNPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLS-ATQES 293
Query: 305 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPF 364
PL + VN+ TAG+PPP ++L GF I+H YGLTE G CAWKP+W+ LP
Sbjct: 294 Q--PLNHPVNILTAGSPPPATVLLRAESIGFVISHGYGLTETAGVIVSCAWKPKWNHLPA 351
Query: 365 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424
+ARL ARQGVRT+ +DV+D + V +G+T+GEIVMRGS VM GYLK+P E
Sbjct: 352 SDRARLKARQGVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTE 411
Query: 425 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484
+A NGWF++GD+ V H D Y+EIKDR KD+II+GGEN+SSVEVE VLY P V E AVV
Sbjct: 412 KALKNGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTIPAVNEVAVV 471
Query: 485 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSA 543
ARPDE WGE+PCAFV+LK + E++ ++CR KMP Y VPK+V F LPKS+
Sbjct: 472 ARPDEFWGETPCAFVSLK---NGFSGKPTEEELMEYCRKKMPKYMVPKTVSFMDELPKSS 528
Query: 544 TGKIQKHLLRAKAKEMG 560
TGK+ K +LR AK+MG
Sbjct: 529 TGKVTKFVLRDIAKKMG 545
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FFE6|AAE5_ARATH Probable acyl-activating enzyme 5, peroxisomal OS=Arabidopsis thaliana GN=AAE5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 541 bits (1393), Expect = e-153, Method: Compositional matrix adjust.
Identities = 271/561 (48%), Positives = 365/561 (65%), Gaps = 15/561 (2%)
Query: 7 IDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKH-YTWHQTYRRCRRFASALSKL 65
++ + +AN LTP+ F+ RAAT++ S+VYGS YTW +T RC R AS+LS +
Sbjct: 1 MEQMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSI 60
Query: 66 SIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 125
IG VSV++PN PAMYE QF PM+GA+LN+IN RL+A V+ +L H S ++ VD
Sbjct: 61 GIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCGSKLLFVDV 120
Query: 126 EFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA-LARGAIEYEKFLETGDP 184
LA EA+ MM + P L+ I D+ + + A + + Y+ + GD
Sbjct: 121 FSVDLAVEAISMMTTDP------PILVFIADKEEEGGDADVADRTKFSYTYDDLIHRGDL 174
Query: 185 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP 244
+F W PE EW + L YTSGTT++PKGVV HRG ++MS++ + W + + V+LWTLP
Sbjct: 175 DFKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSIDSLIDWTVPKNPVYLWTLP 234
Query: 245 MFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED 304
+FH NGWSY W +AA+ GT++CLR+ A +Y I HGVTH C APVVLN + S +
Sbjct: 235 IFHANGWSYPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNML---SATN 291
Query: 305 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPF 364
PL VN+ TAGAPPP ++L GF I+H YGLTE G CAWKP+W+ LP
Sbjct: 292 EFQPLNRPVNILTAGAPPPAAVLLRAESIGFVISHGYGLTETAGLNVSCAWKPQWNRLPA 351
Query: 365 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424
+ARL ARQGVRT+ +DV+D + + V +G+T+GEIVMRGS +M GYLK+P E
Sbjct: 352 SDRARLKARQGVRTVGFTEIDVVDPESGRSVERNGETVGEIVMRGSSIMLGYLKDPVGTE 411
Query: 425 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484
+A NGWF++GD+ V H D Y+EIKDR KD+II+GGEN+SSVEVE VLY +P V E AVV
Sbjct: 412 KALKNGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTNPAVNEVAVV 471
Query: 485 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSA 543
ARPD WGE+PCAFV+LK L + ++ ++CR KMP Y VPK+V F LPK++
Sbjct: 472 ARPDVFWGETPCAFVSLK---SGLTQRPTEVEMIEYCRKKMPKYMVPKTVSFVDELPKTS 528
Query: 544 TGKIQKHLLRAKAKEMGPVKM 564
TGK+ K +LR AK+MG ++
Sbjct: 529 TGKVMKFVLREIAKKMGTTRL 549
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C8D4|AAE11_ARATH Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana GN=AAE11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 520 bits (1339), Expect = e-146, Method: Compositional matrix adjust.
Identities = 268/558 (48%), Positives = 349/558 (62%), Gaps = 15/558 (2%)
Query: 7 IDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLS 66
+D+L AN LTP+ F+ RA+ +P R S++YG +TW QTY RC R A++L L+
Sbjct: 1 MDNLVLCEANNVPLTPITFLKRASECYPNRTSIIYGQTRFTWPQTYDRCCRLAASLLSLN 60
Query: 67 IGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQE 126
I VS++APNVPAMYE F PM GAVLN IN RL+A +A IL HA ++ VD E
Sbjct: 61 ITRNDVVSILAPNVPAMYEMHFSVPMTGAVLNPINTRLDAKTIAIILRHAEPKILFVDYE 120
Query: 127 FFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEF 186
F L +E L+++ P +I+I + +K L +YE + G+P
Sbjct: 121 FAPLIQEVLRLIPTYQSQP--HPRIILINEIDSTTKPFSKEL-----DYEGLIRKGEPTP 173
Query: 187 AWKPP----EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWT 242
+ +E I+L YTSGTTA PKGVV+SH+GAYL +L+ + W M V+LWT
Sbjct: 174 SSSASMFRVHNEHDPISLNYTSGTTADPKGVVISHQGAYLSALSSIIGWEMGIFPVYLWT 233
Query: 243 LPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASP 302
LPMFH NGW++TWS+AA GT++C+R VTA +Y I HGVTH P V + S
Sbjct: 234 LPMFHCNGWTHTWSVAARGGTNVCIRHVTAPEIYKNIELHGVTHMSCVPTVFRFLLEGSR 293
Query: 303 EDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL 362
D P ++ V V T G+ PP L+ + Q GF + H YGLTE TGP C W+ EW+ L
Sbjct: 294 TDQ-SPKSSPVQVLTGGSSPPAVLIKKVEQLGFHVMHGYGLTEATGPVLFCEWQDEWNKL 352
Query: 363 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA 422
P Q L RQGVR + L +DV + +T + VP DGKT+GEIV++GS +MKGYLKNPKA
Sbjct: 353 PEHQQIELQQRQGVRNLTLADVDVKNTKTLESVPRDGKTMGEIVIKGSSLMKGYLKNPKA 412
Query: 423 NEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 482
EAF +GW ++GD+ V HPD Y+EIKDR KD+IISGGENISS+EVEKVLY++ VLEAA
Sbjct: 413 TSEAFKHGWLNTGDIGVIHPDGYVEIKDRSKDIIISGGENISSIEVEKVLYMYQEVLEAA 472
Query: 483 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV-FAALPK 541
VVA P WGE+PCAFV LK + L + D+ K+CR MP + PK VV F LPK
Sbjct: 473 VVAMPHPLWGETPCAFVVLKKGEEGLVTSE--GDLIKYCRENMPHFMCPKKVVFFQELPK 530
Query: 542 SATGKIQKHLLRAKAKEM 559
++ GKI K LR AK +
Sbjct: 531 NSNGKILKSKLRDIAKAL 548
|
Butyrate--CoA ligase that is active in vitro with medium-chain fatty acids, with a preference for hexanoate and octanoate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9LPK7|AEE10_ARATH Probable acyl-activating enzyme 10 OS=Arabidopsis thaliana GN=AEE10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 516 bits (1330), Expect = e-145, Method: Compositional matrix adjust.
Identities = 262/551 (47%), Positives = 363/551 (65%), Gaps = 17/551 (3%)
Query: 15 ANYTALTPLWFINRAATLHPTRKSVVYGSKH-YTWHQTYRRCRRFASALSKLSIGL--GT 71
+N T LT L F++RAA+++ S+++ + +TW +T+ RC R ASAL+ SIG+ G
Sbjct: 9 SNSTPLTVLGFLDRAASVYGDCPSILHTANTVHTWSETHNRCLRIASALTSSSIGIKQGQ 68
Query: 72 TVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLA 131
VSV+ PNVP++YE QF PM+GA+LN+IN RL+A ++ +L H+ S +V VD SL
Sbjct: 69 VVSVVGPNVPSVYELQFAVPMSGAILNNINPRLDAHALSVLLRHSESRLVFVDHRSISLV 128
Query: 132 EEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 191
EA+ + + + PHL+++ D D + + + YE+ +E G+ F W P
Sbjct: 129 LEAVSLFTQHEK-----PHLVLLDD---DQENDSSSASDFLDTYEEIMERGNSRFKWIRP 180
Query: 192 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 251
+ EWQ + L YTSGTT+SPKGVV+SHR ++++++ L W + V+LWTLPMFH NGW
Sbjct: 181 QTEWQPMVLNYTSGTTSSPKGVVLSHRAIFMLTVSSLLDWSVPNRPVYLWTLPMFHANGW 240
Query: 252 SYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTN 311
YTW AA+ T+IC R+V A +Y I H VTH CAAP+VLN + N P T PL N
Sbjct: 241 GYTWGTAAVGATNICTRRVDAPTIYNLIDKHNVTHMCAAPMVLNMLINY-PLST--PLKN 297
Query: 312 VVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN 371
V V T+GAPPP +++ GF ++H+YGLTE +GP CAWKP+WD L +ARL
Sbjct: 298 PVQVMTSGAPPPATIISRAESLGFNVSHSYGLTETSGPVVSCAWKPKWDHLDPLERARLK 357
Query: 372 ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANG 430
+RQGVRT+ +DV D +T + V DG ++GEIV RGS VM GY K+P+ +G
Sbjct: 358 SRQGVRTLGFTEVDVRDRKTGKSVKHDGVSVGEIVFRGSSVMLGYYKDPQGTAACMREDG 417
Query: 431 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 490
WF+SGD+ V H D Y+EIKDR KDVII GGENISS E+E VLY +P+V EAAVVA+PD+
Sbjct: 418 WFYSGDIGVIHKDGYLEIKDRSKDVIICGGENISSAEIETVLYTNPVVKEAAVVAKPDKM 477
Query: 491 WGESPCAFVTLKPEADELDKGKLAE-DVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 548
WGE+PCAFV+LK + + + E ++ +FC+ K+P Y VP+ V+F LPK++TGKIQ
Sbjct: 478 WGETPCAFVSLKCDNNGDGSVPVTEREIREFCKTKLPKYMVPRKVIFQEELPKTSTGKIQ 537
Query: 549 KHLLRAKAKEM 559
K LLR AK +
Sbjct: 538 KFLLRQMAKTL 548
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SS01|AAE20_ARATH Benzoate--CoA ligase, peroxisomal OS=Arabidopsis thaliana GN=AAE20 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 515 bits (1327), Expect = e-145, Method: Compositional matrix adjust.
Identities = 262/562 (46%), Positives = 355/562 (63%), Gaps = 19/562 (3%)
Query: 7 IDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLS 66
+DDL AN LTP+ F+ RA+ +P R S++YG +TW QTY RC R A++L L+
Sbjct: 1 MDDLALCEANNVPLTPMTFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 67 IGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQE 126
I VSV+APN PA+YE F PMAGAVLN IN RL+AT +A IL HA ++ +D+
Sbjct: 61 ISKNDVVSVMAPNTPALYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFLDRS 120
Query: 127 FFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEF 186
F +LA E+L ++ ++ + L P + + ++ E ++YE ++ G+P
Sbjct: 121 FEALARESLHLL-SSEDSNLNLPVIFIHENDFPKRASFE------ELDYECLIQRGEPTP 173
Query: 187 AWKPP----EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWT 242
+ +DE I+L YTSGTTA PKGVV+SHRGAYL +L+ + W M V+LWT
Sbjct: 174 SMVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLCTLSAIIGWEMGTCPVYLWT 233
Query: 243 LPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASP 302
LPMFH NGW++TW AA GTS+C+R VTA +Y I H VTH C P V N + +
Sbjct: 234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNS 293
Query: 303 EDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL 362
D + P + V+V T G+PPP +L+ + + GF++ H YG TE TGP C W+ EW+ L
Sbjct: 294 LD-LSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGQTEATGPILFCEWQDEWNRL 352
Query: 363 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA 422
P Q L ARQG+ + L +DV + T + P DGKT+GEI+++GS +MKGYLKNPKA
Sbjct: 353 PENQQMELKARQGISILGLADVDVKNKETQKSAPRDGKTMGEILIKGSSIMKGYLKNPKA 412
Query: 423 NEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 482
EAF +GW ++GD+ V HPD ++EIKDR KD+IISGGENISSVEVE VLY +P VLE A
Sbjct: 413 TFEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETA 472
Query: 483 VVARPDERWGESPCAFVTLKP-----EADELDKGKLAE-DVSKFCRAKMPSYWVPKSVVF 536
VVA P WGE+PCAFV L+ + D +DK + E ++ ++CR +P + P+ VVF
Sbjct: 473 VVAMPHPTWGETPCAFVVLEKSETTIKEDRVDKFQTRERNLIEYCRENLPHFMCPRKVVF 532
Query: 537 -AALPKSATGKIQKHLLRAKAK 557
LPK+ GKI K LR AK
Sbjct: 533 LEELPKNGNGKILKPKLRDIAK 554
|
Benzoate--CoA ligase involved in benzoyloxyglucosinolate biosynthesis in seeds. Glucosinolates are secondary metabolites involved in pathogen and insect defense of cruciferous plants. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LQS1|AAE8_ARATH Probable acyl-activating enzyme 8 OS=Arabidopsis thaliana GN=AAE8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 266/556 (47%), Positives = 358/556 (64%), Gaps = 15/556 (2%)
Query: 7 IDDLPKISANYTALTPLWFINRAATLHPTRKSVVYG-SKHYTWHQTYRRCRRFASALSKL 65
++DL +AN LT L F+ RAAT++ S+VYG S YTW +T RC ASALS +
Sbjct: 1 MEDLKPSAANSLPLTLLGFLERAATVYGDCTSIVYGNSTVYTWRETNHRCLCVASALSSI 60
Query: 66 SIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 125
IG VSV++ N P MYE QF PM+GA+LN+IN RL+A V+ +L H S ++ VD
Sbjct: 61 GIGRSDVVSVLSANTPEMYELQFSVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDF 120
Query: 126 EFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA-LARGAIEYEKFLETGDP 184
+ LA EA+ M+ L P L++I +E + E ++ Y + G+P
Sbjct: 121 FYSDLAVEAITML-------LNPPILVLIANEEEEEGGAEVTERSKFCYLYSDLITRGNP 173
Query: 185 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP 244
+F W P EW I + YTSGTT+SPKGVV HRG ++M+L+ W + + V+LWTLP
Sbjct: 174 DFKWIRPGSEWDPIVVNYTSGTTSSPKGVVHCHRGIFVMTLDSLTDWAVPKTPVYLWTLP 233
Query: 245 MFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED 304
+FH NGW+Y W +AA+ GT++C+R++ A ++Y I HGVTH AP+VL ++ + D
Sbjct: 234 IFHANGWTYPWGIAAVGGTNVCVRKLHAPSIYHLIRDHGVTHMYGAPIVLQILSASQESD 293
Query: 305 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPF 364
PL + VN TAG+ PP ++L GF ++H YGLTE G CAWKP W+ LP
Sbjct: 294 Q--PLKSPVNFLTAGSSPPATVLLRAESLGFIVSHGYGLTETAGVIVSCAWKPNWNRLPA 351
Query: 365 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424
QA+L +RQGVRT+ +DV+D + + V DG+T+GEIV+RGS +M GYLKNP +
Sbjct: 352 SDQAQLKSRQGVRTVGFSEIDVVDPESGRSVERDGETVGEIVLRGSSIMLGYLKNPIGTQ 411
Query: 425 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484
+F NGWF +GDL V H D Y+EIKDR KDVIISGGEN+SSVEVE VLY +P V EAAVV
Sbjct: 412 NSFKNGWFFTGDLGVIHGDGYLEIKDRSKDVIISGGENVSSVEVEAVLYTNPAVNEAAVV 471
Query: 485 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSA 543
ARPDE WGE+PCAFV+LKP L + +++ ++C+ KMP Y PK+V F LPK++
Sbjct: 472 ARPDEFWGETPCAFVSLKP---GLTRKPTDKEIIEYCKYKMPRYMAPKTVSFLEELPKTS 528
Query: 544 TGKIQKHLLRAKAKEM 559
TGKI K LL+ AK M
Sbjct: 529 TGKIIKSLLKEIAKNM 544
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LPK6|AEE9_ARATH Probable acyl-activating enzyme 9 OS=Arabidopsis thaliana GN=AEE9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 512 bits (1319), Expect = e-144, Method: Compositional matrix adjust.
Identities = 262/551 (47%), Positives = 355/551 (64%), Gaps = 16/551 (2%)
Query: 15 ANYTALTPLWFINRAATLHPTRKSVVYGSKH-YTWHQTYRRCRRFASALSKLSIGL--GT 71
+N T LT L F++RAA+++ S+++ + +TW +T+ RC R ASAL+ S+G+ G
Sbjct: 9 SNSTPLTVLGFLDRAASVYGDCPSILHTTNTVHTWSETHNRCLRIASALTSSSLGINRGQ 68
Query: 72 TVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLA 131
VSV+ PNVP++YE QF PM+GA+LN+IN RL+A ++ +L H+ S +V VD S+
Sbjct: 69 VVSVVGPNVPSVYELQFAVPMSGAILNNINPRLDAHALSVLLRHSESKLVFVDPNSISVV 128
Query: 132 EEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 191
EA+ M N + PHL+++ D+ D A + Y+ +E GD F W P
Sbjct: 129 LEAVSFMRQNEK-----PHLVLLDDDQEDGSLSPSAASDFLDTYQGVMERGDSRFKWIRP 183
Query: 192 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 251
+ EWQ + L YTSGTT+SPKGVV+SHR ++++++ L W V+LWTLPMFH NGW
Sbjct: 184 QTEWQPMILNYTSGTTSSPKGVVLSHRAIFMLTVSSLLDWHFPNRPVYLWTLPMFHANGW 243
Query: 252 SYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTN 311
YTW AA+ T++C R+V A +Y I H VTH CAAP+VLN + N PL N
Sbjct: 244 GYTWGTAAVGATNVCTRRVDAPTIYDLIDKHHVTHMCAAPMVLNMLTNYPSRK---PLKN 300
Query: 312 VVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN 371
V V TAGAPPP +++ GF + H YGLTE GP CAWK EWD L +ARL
Sbjct: 301 PVQVMTAGAPPPAAIISRAETLGFNVGHGYGLTETGGPVVSCAWKAEWDHLDPLERARLK 360
Query: 372 ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANG 430
+RQGVRTI +DV D RT + V DG ++GEIV++G VM GY K+P+ +G
Sbjct: 361 SRQGVRTIGFAEVDVRDPRTGKSVEHDGVSVGEIVLKGGSVMLGYYKDPEGTAACMREDG 420
Query: 431 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 490
WF+SGD+ V H D Y+E+KDR KDVII GGENISS EVE VLY +P+V EAAVVA+PD+
Sbjct: 421 WFYSGDVGVIHEDGYLEVKDRSKDVIICGGENISSAEVETVLYTNPVVKEAAVVAKPDKM 480
Query: 491 WGESPCAFVTLKPEADELDKGKLAE-DVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 548
WGE+PCAFV+LK D G + E ++ +FC+ ++P Y VP+ V+F LPK++TGKIQ
Sbjct: 481 WGETPCAFVSLK--YDSNGNGLVTEREIREFCKTRLPKYMVPRKVIFQEELPKTSTGKIQ 538
Query: 549 KHLLRAKAKEM 559
K LLR AK +
Sbjct: 539 KFLLRQMAKSL 549
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 569 | ||||||
| 449432900 | 567 | PREDICTED: acetate/butyrate--CoA ligase | 0.994 | 0.998 | 0.750 | 0.0 | |
| 255556324 | 564 | AMP dependent ligase, putative [Ricinus | 0.985 | 0.994 | 0.761 | 0.0 | |
| 225431902 | 567 | PREDICTED: medium-chain-fatty-acid--CoA | 0.994 | 0.998 | 0.742 | 0.0 | |
| 255556322 | 565 | AMP dependent ligase, putative [Ricinus | 0.987 | 0.994 | 0.760 | 0.0 | |
| 147854579 | 567 | hypothetical protein VITISV_017128 [Viti | 0.994 | 0.998 | 0.742 | 0.0 | |
| 357478905 | 566 | 2-succinylbenzoate-CoA ligase [Medicago | 0.985 | 0.991 | 0.743 | 0.0 | |
| 356521803 | 568 | PREDICTED: medium-chain-fatty-acid--CoA | 0.992 | 0.994 | 0.75 | 0.0 | |
| 225431900 | 567 | PREDICTED: medium-chain-fatty-acid--CoA | 0.994 | 0.998 | 0.740 | 0.0 | |
| 356564634 | 569 | PREDICTED: medium-chain-fatty-acid--CoA | 0.985 | 0.985 | 0.745 | 0.0 | |
| 380042372 | 569 | acyl-activating enzyme 6 [Cannabis sativ | 0.994 | 0.994 | 0.742 | 0.0 |
| >gi|449432900|ref|XP_004134236.1| PREDICTED: acetate/butyrate--CoA ligase AAE7, peroxisomal-like [Cucumis sativus] gi|449503854|ref|XP_004162208.1| PREDICTED: acetate/butyrate--CoA ligase AAE7, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/566 (75%), Positives = 493/566 (87%)
Query: 1 MVGVKDIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFAS 60
M G +DIDDLPK ANYTALTPLWFI RAA +HP+R SVV+GS+ Y W QTY+RCRR AS
Sbjct: 1 MAGARDIDDLPKNHANYTALTPLWFIERAALVHPSRLSVVHGSRRYNWRQTYQRCRRLAS 60
Query: 61 ALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAV 120
ALS SIG G TV++IAPN+PA+YEA FG PMAGAVLN +NIRLNA ++F+L H++SAV
Sbjct: 61 ALSNRSIGAGDTVAIIAPNIPAIYEAHFGVPMAGAVLNCVNIRLNAQTISFLLGHSASAV 120
Query: 121 VIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLE 180
V+VDQEFF LAEEAL ++ A +G K P LIVIGDE+CD + L+YAL++GAIEYEKFLE
Sbjct: 121 VMVDQEFFPLAEEALNILAAKGDGHYKPPLLIVIGDENCDPEALKYALSKGAIEYEKFLE 180
Query: 181 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFL 240
G+PE+AWKPPEDEWQSI LGYTSGTTASPKGVV+SHRGAY+MSL+ L+WGMNEGA++L
Sbjct: 181 IGNPEYAWKPPEDEWQSITLGYTSGTTASPKGVVLSHRGAYVMSLSAGLVWGMNEGAIYL 240
Query: 241 WTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA 300
WTLPMFH NGW YTW+LAALCGTSICLRQVTAKAVY+AIA H VTHFCAAPVVLN I NA
Sbjct: 241 WTLPMFHCNGWCYTWALAALCGTSICLRQVTAKAVYSAIAKHKVTHFCAAPVVLNTIVNA 300
Query: 301 SPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD 360
EDTILPL +VV+V TAGA PPPS+L+AMSQKGFRITHTYGL+E GP+++CAWKPEWD
Sbjct: 301 PKEDTILPLPHVVHVMTAGAAPPPSVLYAMSQKGFRITHTYGLSETYGPSTICAWKPEWD 360
Query: 361 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP 420
SLP E QAR+NARQGVR + L+GLDV++ +T QPVP+DGKT+GEIVMRG+ VMKGYLKNP
Sbjct: 361 SLPPEAQARMNARQGVRYVGLEGLDVVNTQTMQPVPSDGKTVGEIVMRGNAVMKGYLKNP 420
Query: 421 KANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 480
KAN+EAFANGWFHSGDL VKHPD YIEIKDR KD+IISGGENISSVE+E LY HP +LE
Sbjct: 421 KANKEAFANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSVEIENTLYQHPAILE 480
Query: 481 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALP 540
+VVAR DERWGESPCAFVTLK + D+ D+ ++AED+ KFC++KMP+YWVPKSVVF LP
Sbjct: 481 VSVVARADERWGESPCAFVTLKSKIDKGDEQRMAEDIMKFCKSKMPAYWVPKSVVFGELP 540
Query: 541 KSATGKIQKHLLRAKAKEMGPVKMIK 566
K+ATGK+QKHLLRAKAKEMGPVKM K
Sbjct: 541 KTATGKVQKHLLRAKAKEMGPVKMSK 566
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556324|ref|XP_002519196.1| AMP dependent ligase, putative [Ricinus communis] gi|223541511|gb|EEF43060.1| AMP dependent ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/562 (76%), Positives = 489/562 (87%), Gaps = 1/562 (0%)
Query: 5 KDIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSK 64
KDIDDLPK+ ANYTALTPLWF+ RAAT+HPTR +VV+GS+ Y+W QTY RCRR ASAL+
Sbjct: 3 KDIDDLPKLQANYTALTPLWFLERAATVHPTRTAVVHGSERYSWLQTYHRCRRLASALNN 62
Query: 65 LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVD 124
+IG G+TV+VIAPN+PA+YEA FG PMAGAVLN++NIRL+A +AF+L H+ S VV+VD
Sbjct: 63 RNIGAGSTVAVIAPNIPALYEAHFGVPMAGAVLNTVNIRLDAPTIAFLLGHSRSTVVMVD 122
Query: 125 QEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP 184
QE+F LAE A K++ A E P LIVI DESCD KQL++AL RGAIEYEKFLE GDP
Sbjct: 123 QEYFHLAEGAFKIL-AEKENNFSPPLLIVIADESCDPKQLQHALKRGAIEYEKFLENGDP 181
Query: 185 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP 244
EFAWKPPEDEWQSIALGYTSGTTASPKGVV+SHRGAYLM+L+ A+IWG+NEGAV+LWTLP
Sbjct: 182 EFAWKPPEDEWQSIALGYTSGTTASPKGVVLSHRGAYLMALSCAMIWGLNEGAVYLWTLP 241
Query: 245 MFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED 304
MFH NGW YTWSLAALCGT+ICLRQVTAKAVY+AIA GVTHFCAAPVVLN I NA E+
Sbjct: 242 MFHCNGWCYTWSLAALCGTNICLRQVTAKAVYSAIANQGVTHFCAAPVVLNTIVNAPKEE 301
Query: 305 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPF 364
ILPL VV+VNTAGA PPPSLLFAMS+KGFR+THTYGL+E GP++VCAWKPEWDSLP
Sbjct: 302 AILPLPRVVHVNTAGAAPPPSLLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPP 361
Query: 365 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424
QARLNARQGVR I L+GLDV+D +TN+PVPADGKT+GEIVMRG+ VMKGYLKNP+AN+
Sbjct: 362 IKQARLNARQGVRYIGLEGLDVVDTKTNKPVPADGKTMGEIVMRGNLVMKGYLKNPEANK 421
Query: 425 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484
EAFANGWFHSGDLAVKHPD YIEIKDR KD+IISGGENISS+EVE VLY HP V E +VV
Sbjct: 422 EAFANGWFHSGDLAVKHPDGYIEIKDRNKDIIISGGENISSLEVENVLYTHPAVFEVSVV 481
Query: 485 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSAT 544
AR DERWGESPCAFVTLK D+ D+G+LAED+ KFC++KMP+YWVPKSVVF LPK+AT
Sbjct: 482 AREDERWGESPCAFVTLKEGTDKSDEGRLAEDIMKFCKSKMPAYWVPKSVVFGPLPKTAT 541
Query: 545 GKIQKHLLRAKAKEMGPVKMIK 566
GKIQKH+LR KAK+MGPVK K
Sbjct: 542 GKIQKHVLRDKAKKMGPVKKSK 563
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431902|ref|XP_002276533.1| PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/566 (74%), Positives = 485/566 (85%)
Query: 1 MVGVKDIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFAS 60
MV +DIDDLPK +ANYTALTPLWF+ RAA +HP RKSV++GS YTW QTY+RCRR AS
Sbjct: 1 MVVERDIDDLPKNAANYTALTPLWFLERAAVVHPNRKSVIHGSLQYTWLQTYQRCRRLAS 60
Query: 61 ALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAV 120
ALSK SIG G+TV++IAPN+PAMYEA FG PM+GAV+N +NIRLNA +AF+L H+S+AV
Sbjct: 61 ALSKYSIGAGSTVAIIAPNIPAMYEAHFGVPMSGAVVNCVNIRLNAPTIAFLLEHSSAAV 120
Query: 121 VIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLE 180
V+VDQEFF LAEEALK+ S+ K P LIVI DESCD K LEYAL +G IEYE+FLE
Sbjct: 121 VMVDQEFFPLAEEALKIWSGKSKNDFKPPLLIVIADESCDPKGLEYALRKGVIEYEQFLE 180
Query: 181 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFL 240
TGDPEFAWKPP+DEWQSIALGYTSGTTASPKGVV+ HRGAY+M+L+GAL+WGMNEGAV+L
Sbjct: 181 TGDPEFAWKPPQDEWQSIALGYTSGTTASPKGVVLHHRGAYVMALSGALVWGMNEGAVYL 240
Query: 241 WTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA 300
WTLPMFH NGW +TW+LAALCGT+ICLRQV KA+Y AIA GVTH CAAPVVLN+I NA
Sbjct: 241 WTLPMFHCNGWCFTWTLAALCGTNICLRQVATKAIYQAIANDGVTHLCAAPVVLNSIVNA 300
Query: 301 SPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD 360
+TILPL VV+V TAGA PPPS+LFAMSQ+GFR+THTYGL+E GP++VCAWKPEWD
Sbjct: 301 PKSETILPLPRVVHVMTAGAAPPPSVLFAMSQQGFRVTHTYGLSETYGPSTVCAWKPEWD 360
Query: 361 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP 420
LP ETQARLNARQGVR I L+GLDV+ +PVPADG TIGEIVMRG+ VMKGYLKNP
Sbjct: 361 ELPPETQARLNARQGVRYIGLEGLDVVSTTDMKPVPADGTTIGEIVMRGNTVMKGYLKNP 420
Query: 421 KANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 480
KANEE FANGWFHSGDL VKHPD YI++KDR KD+IISGGENISSVE+E +YLHP VLE
Sbjct: 421 KANEETFANGWFHSGDLGVKHPDGYIQLKDRSKDIIISGGENISSVEIENAVYLHPAVLE 480
Query: 481 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALP 540
A+VVARPD+RWGESPCAFVTLKP D D+ +LAED+ KFCR+++P+YW+PKSVVF LP
Sbjct: 481 ASVVARPDDRWGESPCAFVTLKPGVDRSDERRLAEDIMKFCRSRLPAYWIPKSVVFGPLP 540
Query: 541 KSATGKIQKHLLRAKAKEMGPVKMIK 566
K+ATGKIQKHLLRA+AKEMG +K K
Sbjct: 541 KTATGKIQKHLLRARAKEMGTLKKSK 566
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556322|ref|XP_002519195.1| AMP dependent ligase, putative [Ricinus communis] gi|223541510|gb|EEF43059.1| AMP dependent ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/563 (76%), Positives = 492/563 (87%), Gaps = 1/563 (0%)
Query: 4 VKDIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALS 63
VKDID+LPK +ANYTALTPL F++RAAT+HP+R S+V+GS HYTW QTY+RCRR ASAL+
Sbjct: 3 VKDIDELPKNAANYTALTPLLFLDRAATVHPSRVSLVHGSTHYTWLQTYKRCRRLASALT 62
Query: 64 KLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV 123
S+G G+TV++IAPNVPAMYEA FG PMAGAV+N +NIRLNA+ VAF+L H+ S VV+V
Sbjct: 63 NHSVGFGSTVAIIAPNVPAMYEAHFGVPMAGAVVNCVNIRLNASTVAFLLGHSKSEVVMV 122
Query: 124 DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGD 183
DQEFFSLAEEAL+++ A SE K LIVI D+SCD K L++AL RGAIEYEKFLE+GD
Sbjct: 123 DQEFFSLAEEALEIL-AKSESSFKPALLIVIADKSCDPKSLKHALGRGAIEYEKFLESGD 181
Query: 184 PEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTL 243
PEFAWK PEDEWQSIALGYTSGTTASPKGVV+SHRGAYLMSL+ LIWGMNEGAV+LWTL
Sbjct: 182 PEFAWKQPEDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSNPLIWGMNEGAVYLWTL 241
Query: 244 PMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE 303
PMFH NGW +TWSLAALCGT+ICLRQVTAKAVY+AIA +GV+HFC APVVLN I NA E
Sbjct: 242 PMFHCNGWCFTWSLAALCGTNICLRQVTAKAVYSAIANNGVSHFCGAPVVLNTIVNAPKE 301
Query: 304 DTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLP 363
+TILPL +V+V TAGA PPPS+LFAMS+KGFR+THTYGL+E GP++VCAWKPEWDS P
Sbjct: 302 ETILPLPRIVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSQP 361
Query: 364 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 423
QARLNARQGVR I L+GLDV+D +T +PVPADGKTIGEIVMRG+ VMKGYLKNPKAN
Sbjct: 362 PIVQARLNARQGVRYIGLEGLDVVDPKTMKPVPADGKTIGEIVMRGNIVMKGYLKNPKAN 421
Query: 424 EEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483
EEAFANGWFHSGDLAVKHPDNY+EIKDR KD+IISGGENISS+EVE +LY HP V EA+V
Sbjct: 422 EEAFANGWFHSGDLAVKHPDNYMEIKDRSKDIIISGGENISSLEVENILYTHPAVYEASV 481
Query: 484 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSA 543
VARPDE+WGESPCAFVTLKP + D+ LAE++ KF R+KMP+YWVPKSVVF LPK+A
Sbjct: 482 VARPDEQWGESPCAFVTLKPGVNRSDERYLAEELIKFSRSKMPAYWVPKSVVFGPLPKTA 541
Query: 544 TGKIQKHLLRAKAKEMGPVKMIK 566
TGKIQKH+LRA+AKEMGPVK K
Sbjct: 542 TGKIQKHVLRARAKEMGPVKKSK 564
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147854579|emb|CAN82780.1| hypothetical protein VITISV_017128 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/566 (74%), Positives = 482/566 (85%)
Query: 1 MVGVKDIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFAS 60
MV +DIDDLPK +ANYTALTPLW + RAA +HP RKSV++GS YTW QTY+RCRR AS
Sbjct: 1 MVVERDIDDLPKNAANYTALTPLWLLERAAVVHPNRKSVIHGSLQYTWLQTYQRCRRLAS 60
Query: 61 ALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAV 120
ALSK SIG G+TV++IAPN+PAMYEA FG PM+GAV+N +NIRLNA +AF+L H+S+AV
Sbjct: 61 ALSKYSIGAGSTVAIIAPNIPAMYEAHFGVPMSGAVVNCVNIRLNAPTIAFLLEHSSAAV 120
Query: 121 VIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLE 180
V+VDQEFF LAEEALK+ S+ K P LIVI DESCD K LEYAL +G IEYE+FLE
Sbjct: 121 VMVDQEFFPLAEEALKIWSGKSKNDFKPPLLIVIADESCDPKGLEYALRKGVIEYEQFLE 180
Query: 181 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFL 240
TGDPEFAWKPP+DEWQSIALGYTSGTTASPKGVV+ HRGAY+M+L GAL+WGMNEGAV+L
Sbjct: 181 TGDPEFAWKPPQDEWQSIALGYTSGTTASPKGVVLHHRGAYIMALTGALVWGMNEGAVYL 240
Query: 241 WTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA 300
WTLPMFH NGW +TW+LAALCGT+ICLRQV KA+Y AIA GVTH CAAPVVLN+I NA
Sbjct: 241 WTLPMFHCNGWCFTWTLAALCGTNICLRQVATKAIYQAIANDGVTHLCAAPVVLNSIVNA 300
Query: 301 SPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD 360
+TILPL VV+V TAGA PPPS+LFAMSQ+GFR+THTYGL+E GP++VCAWKPEWD
Sbjct: 301 PKSETILPLPRVVHVMTAGAAPPPSVLFAMSQQGFRVTHTYGLSETYGPSTVCAWKPEWD 360
Query: 361 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP 420
LP ETQARLNARQGV I L+GLDV+ +PVPADG TIGEIVMRG+ VMKGYLKNP
Sbjct: 361 ELPPETQARLNARQGVXYIGLEGLDVVSTTDMKPVPADGTTIGEIVMRGNTVMKGYLKNP 420
Query: 421 KANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 480
KANEE FANGWFHSGDL VKHPD YI++KDR KD+IISGGENISSVEVE +YLHP VLE
Sbjct: 421 KANEETFANGWFHSGDLGVKHPDGYIQLKDRSKDIIISGGENISSVEVENAVYLHPAVLE 480
Query: 481 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALP 540
A+VVARPD+RWGESPCAFVTLKP D D+ +LAED+ KFCR+K+P+YW+PKSVVF LP
Sbjct: 481 ASVVARPDDRWGESPCAFVTLKPGVDRSDERRLAEDIMKFCRSKLPAYWIPKSVVFGPLP 540
Query: 541 KSATGKIQKHLLRAKAKEMGPVKMIK 566
K+ATGKIQKHLLRA+ KEMGP+K K
Sbjct: 541 KTATGKIQKHLLRARTKEMGPLKKSK 566
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478905|ref|XP_003609738.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|355510793|gb|AES91935.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/562 (74%), Positives = 490/562 (87%), Gaps = 1/562 (0%)
Query: 5 KDIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSK 64
+DIDDLPK +ANYT+LTPLWF+ RAA +HPTRKS+++GS+HYTW QTY+RCRRFASALS
Sbjct: 5 QDIDDLPKNAANYTSLTPLWFLERAAQVHPTRKSIIHGSRHYTWRQTYQRCRRFASALSN 64
Query: 65 LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVD 124
SI LG TV+VIAPN+PA+YEA FG PMAGAV+N +NIRLNA+ +AF+L H +++VVIVD
Sbjct: 65 RSIALGNTVAVIAPNIPALYEAHFGIPMAGAVINPVNIRLNASTIAFLLGHCTASVVIVD 124
Query: 125 QEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP 184
QEFFSLAEEALK+ ++ K+P LIVIGDE+CD K L YAL++GA+EYE FL +GDP
Sbjct: 125 QEFFSLAEEALKIWSDKTK-TFKSPILIVIGDENCDPKSLRYALSKGAVEYEDFLRSGDP 183
Query: 185 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP 244
E+ WKPPEDEWQSIALGYTSGTTASPKGVV+ HRGAYLMSL+GALIWGMNEGAV+LWTLP
Sbjct: 184 EYNWKPPEDEWQSIALGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMNEGAVYLWTLP 243
Query: 245 MFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED 304
MFH NGW YTW+LAAL GT+ICLRQV+AKAVY AI + VTHFCAAPVVLN+I NA E+
Sbjct: 244 MFHCNGWCYTWTLAALFGTNICLRQVSAKAVYEAIVKYKVTHFCAAPVVLNSIINAPAEE 303
Query: 305 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPF 364
TILPL +VV+VNTAGA PPPS+L MS++GFR+THTYGL+E GP+ CAWKPEWDSLP
Sbjct: 304 TILPLPHVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPEWDSLPP 363
Query: 365 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424
E++ARL+ARQGV+ I L+GLDV++ +T QPVPADGKT+GEIVMRG+ VMKGYLKNPKANE
Sbjct: 364 ESRARLHARQGVKYIALEGLDVVNTKTMQPVPADGKTVGEIVMRGNAVMKGYLKNPKANE 423
Query: 425 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484
E+FANGW+HSGDLAVKHPD YIEIKDR KD+IISG ENISSVEVE LY HP +LE +VV
Sbjct: 424 ESFANGWYHSGDLAVKHPDGYIEIKDRSKDIIISGAENISSVEVENALYSHPAILETSVV 483
Query: 485 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSAT 544
ARPDE+WGESPCAFVTLKP D ++ +L ED+ KFCRAKMP+YWVPKSVVF LPK+AT
Sbjct: 484 ARPDEKWGESPCAFVTLKPGVDRSNEQRLVEDILKFCRAKMPTYWVPKSVVFGPLPKTAT 543
Query: 545 GKIQKHLLRAKAKEMGPVKMIK 566
GK+QKHLLRAKAKEMGP+K K
Sbjct: 544 GKVQKHLLRAKAKEMGPLKTSK 565
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521803|ref|XP_003529540.1| PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/568 (75%), Positives = 489/568 (86%), Gaps = 3/568 (0%)
Query: 1 MVGVK--DIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRF 58
MVG + DIDDLPK +ANYTALTPLWF+ RAAT+HPTR S+++GS+ YTW QTY RCRRF
Sbjct: 1 MVGARPRDIDDLPKNAANYTALTPLWFLERAATVHPTRNSLIHGSRRYTWQQTYHRCRRF 60
Query: 59 ASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASS 118
ASALS SIGLG TV+VIAPN+PA+YEA FG PM+GAVLN +NIRLNA+ VAF+L H ++
Sbjct: 61 ASALSNHSIGLGNTVAVIAPNIPALYEAHFGIPMSGAVLNPVNIRLNASTVAFLLGHCTA 120
Query: 119 AVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178
A VIVDQEFFSLAEEALK+ ++ P LIVI DE+CD K L+YAL +GAIEYE F
Sbjct: 121 AAVIVDQEFFSLAEEALKIWSEKAK-TFSPPLLIVISDENCDPKALKYALGKGAIEYEDF 179
Query: 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAV 238
L++GDPE+AWKPPEDEWQSIALGYTSGTTASPKGVV+ HRGAYLMSL+GALIWGM EGAV
Sbjct: 180 LQSGDPEYAWKPPEDEWQSIALGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMTEGAV 239
Query: 239 FLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIA 298
+LWTLPMFH NGW YTW+LAALCGT+ICLRQVTAKAVY AIA + VTHFCAAPVVLN +
Sbjct: 240 YLWTLPMFHCNGWCYTWTLAALCGTNICLRQVTAKAVYGAIAKYKVTHFCAAPVVLNTLI 299
Query: 299 NASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPE 358
NA EDTILPL +VV+VNTAGA PPPS+L MS++GFR+THTYGL+E GP+ CAWKPE
Sbjct: 300 NAPAEDTILPLPHVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPE 359
Query: 359 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 418
W+SLP E QARLNARQGVR I L+GL V++ +T +PVPADGKT+GEIVMRG+ VMKGYLK
Sbjct: 360 WESLPPENQARLNARQGVRYIGLEGLAVVNTKTMEPVPADGKTVGEIVMRGNSVMKGYLK 419
Query: 419 NPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLV 478
NPKANEE FANGWFHSGDLAVKHPD YIEIKDR KD+IISG ENISSVE+E LY HP +
Sbjct: 420 NPKANEETFANGWFHSGDLAVKHPDGYIEIKDRSKDIIISGAENISSVEIENTLYSHPSI 479
Query: 479 LEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA 538
LEAAVVAR DE+WGESPCAFVTLKP D+ ++ ++ ED+ KF RAKMP+YWVPKSVVF A
Sbjct: 480 LEAAVVARADEKWGESPCAFVTLKPGVDKSNEQRIIEDILKFSRAKMPAYWVPKSVVFGA 539
Query: 539 LPKSATGKIQKHLLRAKAKEMGPVKMIK 566
LPK+ATGKIQKH+LRAKAKEMGPVK+ K
Sbjct: 540 LPKTATGKIQKHILRAKAKEMGPVKLSK 567
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431900|ref|XP_002276434.1| PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/566 (74%), Positives = 482/566 (85%)
Query: 1 MVGVKDIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFAS 60
MV +DIDDLPK +ANYTALTPLW + RAA +HP RKSV++GS YTW QTY+RCRR AS
Sbjct: 1 MVVERDIDDLPKNAANYTALTPLWLLERAAVVHPNRKSVIHGSLQYTWLQTYQRCRRLAS 60
Query: 61 ALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAV 120
ALSK SIG G+TV++IAPN+PA YEA FG PM+GAV+N +NIRLNA +AF+L H+S+AV
Sbjct: 61 ALSKYSIGAGSTVAIIAPNIPAKYEAHFGVPMSGAVVNCVNIRLNAPTIAFLLEHSSAAV 120
Query: 121 VIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLE 180
V+VDQEFF LAEEALK+ S+ K P LIVI DESCD K LEYAL +G IEYE+FLE
Sbjct: 121 VMVDQEFFPLAEEALKIWSDKSKNDFKPPLLIVIADESCDPKALEYALRKGVIEYEQFLE 180
Query: 181 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFL 240
TGDPEFAWKPP+DEWQSIALGYTSGTTASPKGVV+ HRGAY+M+L GAL+WGMNEGAV+L
Sbjct: 181 TGDPEFAWKPPQDEWQSIALGYTSGTTASPKGVVLHHRGAYIMALTGALVWGMNEGAVYL 240
Query: 241 WTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA 300
WTLPMFH NGW +TW+LAALCGT+ICLRQV KA+Y AIA GVTH CAAPVVLN+I NA
Sbjct: 241 WTLPMFHCNGWCFTWTLAALCGTNICLRQVETKAIYQAIANDGVTHLCAAPVVLNSIVNA 300
Query: 301 SPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD 360
+TILPL VV+V TAGA PPPS+LFAMSQ+GFR+THTYGL+E GP++VCAWKPEWD
Sbjct: 301 PKSETILPLPRVVHVMTAGAAPPPSVLFAMSQQGFRVTHTYGLSETYGPSTVCAWKPEWD 360
Query: 361 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP 420
LP ETQARLNARQGV+ I L+GLDV+ +PVPADG TIGEIVMRG+ VMKGYLKNP
Sbjct: 361 ELPPETQARLNARQGVQYIGLEGLDVVSTTDMKPVPADGTTIGEIVMRGNTVMKGYLKNP 420
Query: 421 KANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 480
KANEE FANGWFHSGDL VKHPD YI++KDR KD+IISGGENISSVEVE +YLHP VLE
Sbjct: 421 KANEETFANGWFHSGDLGVKHPDGYIQLKDRSKDIIISGGENISSVEVENAVYLHPAVLE 480
Query: 481 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALP 540
A+VVARPD+RWGESPCAFVTLKP D D+ +LAED+ KFCR+K+P+YW+PKSVVF LP
Sbjct: 481 ASVVARPDDRWGESPCAFVTLKPGVDRSDERRLAEDIMKFCRSKLPAYWIPKSVVFGPLP 540
Query: 541 KSATGKIQKHLLRAKAKEMGPVKMIK 566
K+ATGKIQKHLLRA+ KEMGP+K K
Sbjct: 541 KTATGKIQKHLLRARTKEMGPLKKSK 566
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564634|ref|XP_003550556.1| PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/562 (74%), Positives = 487/562 (86%), Gaps = 1/562 (0%)
Query: 5 KDIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSK 64
+DID LPK +ANYTALTPLWF+ RAAT+HPTR S+++GS+HYTW QTY RCRRFASALS
Sbjct: 8 RDIDHLPKNAANYTALTPLWFLERAATVHPTRNSLIHGSRHYTWQQTYHRCRRFASALSN 67
Query: 65 LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVD 124
SIGLG TV+VIAPN+PA+YEA FG PMAGAVLN +NIRLNA+ +AF+L H ++A VIVD
Sbjct: 68 HSIGLGNTVAVIAPNIPAVYEAHFGIPMAGAVLNPLNIRLNASTIAFLLGHCTAAAVIVD 127
Query: 125 QEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP 184
QEFFSLAEEALK+ ++ P LIVIGDE+CD K L+YAL +GA++YE FL++GDP
Sbjct: 128 QEFFSLAEEALKIWSEKAK-TFSPPLLIVIGDENCDPKALKYALGKGAVDYEDFLQSGDP 186
Query: 185 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP 244
E+AWKPPEDEWQSI+LGYTSGTTASPKGVV+ HRGAYLMSL+GALIWGM EGAV+LWTLP
Sbjct: 187 EYAWKPPEDEWQSISLGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMTEGAVYLWTLP 246
Query: 245 MFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED 304
MFH NGW YTW+LAALCGT+ICLRQVT KAVY AIA + V+HFCAAPVVLN I NA ED
Sbjct: 247 MFHCNGWCYTWTLAALCGTNICLRQVTPKAVYEAIAKYKVSHFCAAPVVLNTIVNAPAED 306
Query: 305 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPF 364
TILPL +VV+VNTAGA PPPS+L MS++GFR+THTYGL+E GP+ CAWKPEW+SLP
Sbjct: 307 TILPLPHVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPEWESLPP 366
Query: 365 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424
E +ARLNARQGVR + L+GLDV++ +T +PVPADGKT+GEIVMRG+ VMKGYLKNPKANE
Sbjct: 367 ENRARLNARQGVRYVGLEGLDVVNTKTMEPVPADGKTVGEIVMRGNSVMKGYLKNPKANE 426
Query: 425 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484
E FANGWFHSGDLAVKHPD YIEIKDR KD+IISG ENISSVE+E LY HP +LEAAVV
Sbjct: 427 ETFANGWFHSGDLAVKHPDGYIEIKDRSKDIIISGAENISSVEIENTLYSHPAILEAAVV 486
Query: 485 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSAT 544
AR DE+WGESPCAFVTLKP D+ + ++ ED+ KFC+AKMP+YWVPKSVVF ALPK+AT
Sbjct: 487 ARADEKWGESPCAFVTLKPGVDKSNGQRIIEDILKFCKAKMPAYWVPKSVVFGALPKTAT 546
Query: 545 GKIQKHLLRAKAKEMGPVKMIK 566
GKIQKH+LRAKAKEMGPVK+ K
Sbjct: 547 GKIQKHILRAKAKEMGPVKLSK 568
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042372|gb|AFD33350.1| acyl-activating enzyme 6 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/566 (74%), Positives = 486/566 (85%)
Query: 1 MVGVKDIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFAS 60
MVG +DIDDLPK +ANYTALTPLWF+ RAAT+HPTR SVV+GS+ YTW QTYRRCR+FAS
Sbjct: 3 MVGRRDIDDLPKNAANYTALTPLWFLERAATIHPTRDSVVHGSRRYTWLQTYRRCRQFAS 62
Query: 61 ALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAV 120
AL+ SI LG+TV+VIAPN+ A+YEA FG PMAGAVLN++NIRLNA+ + F+L H+ +A
Sbjct: 63 ALTTHSIALGSTVAVIAPNIHALYEAHFGVPMAGAVLNAVNIRLNASTIGFLLGHSLAAA 122
Query: 121 VIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLE 180
VIVDQEFF LAEEALK++ + K P L+VIGDESCD K LEYAL RGAIEYEKFLE
Sbjct: 123 VIVDQEFFPLAEEALKILAEERKSHYKPPLLVVIGDESCDPKNLEYALKRGAIEYEKFLE 182
Query: 181 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFL 240
GDPEF+W+PPEDEWQSIALGYTSGTTASPKGVV+SHRG+YLMSL+ A++WGMNEGA++L
Sbjct: 183 GGDPEFSWEPPEDEWQSIALGYTSGTTASPKGVVLSHRGSYLMSLSAAVVWGMNEGAIYL 242
Query: 241 WTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA 300
WTLPMFH NGW YTW +AA+CGT+ICLRQVTAK VY+AIA +GVTHFCAAPVVLN I NA
Sbjct: 243 WTLPMFHCNGWCYTWGMAAMCGTNICLRQVTAKGVYSAIAEYGVTHFCAAPVVLNTIVNA 302
Query: 301 SPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD 360
ED ILPL ++V+V TAGA PPPS+LFAMS+KGF++ HTYGL+E GP+++CAWKPEWD
Sbjct: 303 PAEDAILPLPHLVHVMTAGAAPPPSVLFAMSEKGFKVAHTYGLSETYGPSTICAWKPEWD 362
Query: 361 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP 420
SLP QARLNARQGVR I L+GLDV+D +T + VPADG T+GEIVMRG+ VMKGYLKNP
Sbjct: 363 SLPPIKQARLNARQGVRYIALEGLDVVDTKTMKSVPADGTTMGEIVMRGNAVMKGYLKNP 422
Query: 421 KANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 480
KAN+E+FANGWFHSGDLAVKHPD YIEIKDR KD+IISGGENISS+EVE LYL P VLE
Sbjct: 423 KANKESFANGWFHSGDLAVKHPDGYIEIKDRSKDIIISGGENISSLEVENPLYLPPAVLE 482
Query: 481 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALP 540
VVARPDERWGESPCAFVTLKP D ++ LAED+ KFCR+K P+YWVPKSVVF LP
Sbjct: 483 VFVVARPDERWGESPCAFVTLKPNIDNSNEQGLAEDIIKFCRSKKPAYWVPKSVVFGPLP 542
Query: 541 KSATGKIQKHLLRAKAKEMGPVKMIK 566
K+ATGKIQKH+LR KAKEMG +K K
Sbjct: 543 KTATGKIQKHVLRTKAKEMGALKKSK 568
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 569 | ||||||
| TAIR|locus:2086122 | 569 | AAE7 "acyl-activating enzyme 7 | 0.980 | 0.980 | 0.725 | 2.1e-228 | |
| TIGR_CMR|SPO_0677 | 542 | SPO_0677 "AMP-binding protein" | 0.950 | 0.998 | 0.537 | 2.7e-155 | |
| TAIR|locus:2030407 | 556 | AAE1 "acyl activating enzyme 1 | 0.943 | 0.965 | 0.519 | 6.4e-147 | |
| UNIPROTKB|Q47WB3 | 541 | CPS_4259 "AMP-binding protein" | 0.924 | 0.972 | 0.511 | 2.8e-144 | |
| TIGR_CMR|CPS_4259 | 541 | CPS_4259 "AMP-binding protein" | 0.924 | 0.972 | 0.511 | 2.8e-144 | |
| TAIR|locus:2171357 | 550 | AT5G16340 [Arabidopsis thalian | 0.950 | 0.983 | 0.498 | 1.8e-142 | |
| TAIR|locus:2057249 | 603 | AT2G17650 [Arabidopsis thalian | 0.966 | 0.912 | 0.489 | 1.3e-141 | |
| TAIR|locus:2171402 | 552 | AAE5 "acyl activating enzyme 5 | 0.959 | 0.989 | 0.484 | 4.3e-141 | |
| TAIR|locus:2027012 | 549 | AT1G21530 [Arabidopsis thalian | 0.942 | 0.976 | 0.478 | 1.1e-135 | |
| TAIR|locus:2204360 | 544 | AT1G75960 [Arabidopsis thalian | 0.950 | 0.994 | 0.483 | 1.8e-135 |
| TAIR|locus:2086122 AAE7 "acyl-activating enzyme 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2204 (780.9 bits), Expect = 2.1e-228, P = 2.1e-228
Identities = 405/558 (72%), Positives = 474/558 (84%)
Query: 5 KDIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSK 64
+DIDDLPKI ANYTALTPLWF++RAA +HPTRKSV++GS+ YTW QTY RCRR ASAL+
Sbjct: 7 RDIDDLPKIPANYTALTPLWFLDRAAVVHPTRKSVIHGSREYTWRQTYDRCRRLASALAD 66
Query: 65 LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVD 124
SIG G+TV++IAPN+PAMYEA FG PM GAVLN +NIRLNA VAF+LSH+ S+V++VD
Sbjct: 67 RSIGPGSTVAIIAPNIPAMYEAHFGVPMCGAVLNCVNIRLNAPTVAFLLSHSQSSVIMVD 126
Query: 125 QEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP 184
QEFF+LAE++L++ME + K P LIVIGD +C + L AL++GAIEYE FL TGDP
Sbjct: 127 QEFFTLAEDSLRLMEEKAGSSFKRPLLIVIGDHTCAPESLNRALSKGAIEYEDFLATGDP 186
Query: 185 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP 244
+ W+PP DEWQSIALGYTSGTTASPKGVV+ HRGAY+M+L+ LIWGM +GAV+LWTLP
Sbjct: 187 NYPWQPPADEWQSIALGYTSGTTASPKGVVLHHRGAYIMALSNPLIWGMQDGAVYLWTLP 246
Query: 245 MFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED 304
MFH NGW + WSLA L GTSICLRQVTAK VY+ IA + VTHFCAAPVVLNAI NA ED
Sbjct: 247 MFHCNGWCFPWSLAVLSGTSICLRQVTAKEVYSMIAKYKVTHFCAAPVVLNAIVNAPKED 306
Query: 305 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPF 364
TILPL + V+V TAGA PPPS+LF+M+QKGFR+ HTYGL+E GP++VCAWKPEWDSLP
Sbjct: 307 TILPLPHTVHVMTAGAAPPPSVLFSMNQKGFRVAHTYGLSETYGPSTVCAWKPEWDSLPP 366
Query: 365 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424
ETQA+LNARQGVR ++ LDVID +T +PVPADGKT GEIV RG+ VMKGYLKNP+AN+
Sbjct: 367 ETQAKLNARQGVRYTGMEQLDVIDTQTGKPVPADGKTAGEIVFRGNMVMKGYLKNPEANK 426
Query: 425 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484
E FA GWFHSGD+AVKHPDNYIEIKDR KDVIISGGENISSVEVE V+Y HP VLEA+VV
Sbjct: 427 ETFAGGWFHSGDIAVKHPDNYIEIKDRSKDVIISGGENISSVEVENVVYHHPAVLEASVV 486
Query: 485 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSAT 544
ARPDERW ESPCAFVTLK + ++ D+ KLA+D+ KFCR K+P+YWVPKSVVF LPK+AT
Sbjct: 487 ARPDERWQESPCAFVTLKSDYEKHDQNKLAQDIMKFCREKLPAYWVPKSVVFGPLPKTAT 546
Query: 545 GKIQKHLLRAKAKEMGPV 562
GKIQKH+LR KAKEMGPV
Sbjct: 547 GKIQKHILRTKAKEMGPV 564
|
|
| TIGR_CMR|SPO_0677 SPO_0677 "AMP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1514 (538.0 bits), Expect = 2.7e-155, P = 2.7e-155
Identities = 301/560 (53%), Positives = 373/560 (66%)
Query: 1 MVGVKDIDD-LPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFA 59
M G D L + AN+T L+PL +I R A ++P SVVYG + YTW +TY RCRR A
Sbjct: 1 MTGSTIYDQHLDRTPANFTPLSPLSYIERTAAVYPDYPSVVYGDRRYTWAETYTRCRRLA 60
Query: 60 SALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSA 119
SAL+ +G G TVS+IA N+P MYEA FG PMAGAVLN+IN RL+A ++AFILSHA +
Sbjct: 61 SALAGRGLGKGDTVSIIAANIPEMYEAHFGVPMAGAVLNAINTRLDAPIIAFILSHAEAR 120
Query: 120 VVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFL 179
V+IVD EF + +AL ++ P L+V+ E G + Y+ L
Sbjct: 121 VLIVDPEFSEVVRDALAQIDR--------PDLLVVDIED---PSFAGGAPVGTLSYDALL 169
Query: 180 ETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVF 239
GDP+F W P DEW +IAL YTSGTT +PKGVV HRGA L + + L WGM + AV+
Sbjct: 170 AEGDPDFDWSLPGDEWDAIALNYTSGTTGNPKGVVYHHRGAALNATSNILTWGMPQHAVY 229
Query: 240 LWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN 299
LWTLPMFH NGW + W++AA G S+CLR V + +Y A VTHFC AP+VLN +AN
Sbjct: 230 LWTLPMFHCNGWCFPWTMAANAGVSVCLRAVRDEPIYRAFREEKVTHFCGAPIVLNMLAN 289
Query: 300 ASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 359
A P D + + + V TAGAPPP +++ M G +TH YGLTE GP+ VCAWK EW
Sbjct: 290 A-P-DHMKDFDHQIKVMTAGAPPPAAVIEKMEAMGVDVTHVYGLTETYGPSVVCAWKEEW 347
Query: 360 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 419
D P +A L RQGVR + L GL V D T +PVPADG+T+GEI M+G+ VMKGYLKN
Sbjct: 348 DGRPGAERAALKVRQGVRYVALSGLMVADPETLEPVPADGETMGEIFMQGNIVMKGYLKN 407
Query: 420 PKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL 479
P A + AF GWF SGDL V HPD YI +KDR KD+IISGGENISSVEVE VLY HP V+
Sbjct: 408 PDATDRAFRGGWFASGDLGVMHPDGYIALKDRSKDIIISGGENISSVEVEDVLYKHPAVM 467
Query: 480 EAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAAL 539
EAAVVARPDE+WGE+PCAFV LKP ++ A D+ CRA M + PK+VVF L
Sbjct: 468 EAAVVARPDEKWGETPCAFVELKP-GQSVE----AADLIAHCRANMAHFKAPKTVVFGEL 522
Query: 540 PKSATGKIQKHLLRAKAKEM 559
PK++TGKIQK LLR +A+ +
Sbjct: 523 PKTSTGKIQKFLLRERARAL 542
|
|
| TAIR|locus:2030407 AAE1 "acyl activating enzyme 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1435 (510.2 bits), Expect = 6.4e-147, P = 6.4e-147
Identities = 285/549 (51%), Positives = 372/549 (67%)
Query: 12 KISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGT 71
K ANY LTP+ F++R+A ++ R S+VYGS YTW QT RC R ASALS+L I G
Sbjct: 8 KSPANYVPLTPISFLDRSAVVYADRVSIVYGSVKYTWRQTRDRCVRIASALSQLGISTGD 67
Query: 72 TVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLA 131
VSV+APNVPAM E FG PMAGA+L ++NIR ++++VA +L H+ + V+ D +F +A
Sbjct: 68 VVSVLAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQFLQIA 127
Query: 132 EEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 191
E A +++ +++G K P L++I + S + + +EYE + G +F P
Sbjct: 128 EGACEIL--SNKGD-KVPILVLIPEPLTQSVSRKKR-SEEMMEYEDVVAMGKSDFEVIRP 183
Query: 192 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 251
DE +I++ YTSGTT+SPKGVV SHRGAYL SL L+ M+ +LWT PMFH NGW
Sbjct: 184 TDECDAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNPMFHCNGW 243
Query: 252 SYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTN 311
W + A+ GT+ICLR VTAKA++ I+ H VTH AP +LN I NA PE PL
Sbjct: 244 CLLWGVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIINA-PESEQKPLPG 302
Query: 312 VVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN 371
V+ T APPP ++F M + GF + H+YGLTE GP ++C WKPEWDSLP E QA++
Sbjct: 303 KVSFITGAAPPPAHVIFKMEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKMK 362
Query: 372 ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGW 431
ARQGV + L+ + V D T + +PADG T+GE+V RG+ VM GYLKNP+A +EAF GW
Sbjct: 363 ARQGVNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKGGW 422
Query: 432 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 491
F SGDL VKHPD YIE+KDR KD+IISGGENISS+EVE L+ HP VLEAAVVARPDE W
Sbjct: 423 FWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPDEYW 482
Query: 492 GESPCAFVTLKPEADELDKGKL-AEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKH 550
GE+ CAFV LK D K AE++ +CR ++P Y P+S+VF LPK++TGK+QK
Sbjct: 483 GETACAFVKLK------DGSKASAEELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKF 536
Query: 551 LLRAKAKEM 559
+LR KAK +
Sbjct: 537 VLRTKAKAL 545
|
|
| UNIPROTKB|Q47WB3 CPS_4259 "AMP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1410 (501.4 bits), Expect = 2.8e-144, P = 2.8e-144
Identities = 278/544 (51%), Positives = 367/544 (67%)
Query: 15 ANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVS 74
ANY ALTP+ F+ RAA ++P + + V G +TW + ++RC RFASAL+K IG G TVS
Sbjct: 16 ANYMALTPISFLERAAFVYPDKTATVNGDIRHTWLEVFQRCSRFASALAKRGIGRGDTVS 75
Query: 75 VIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEA 134
VIAPN+ +E FG PM+GAVLNSIN RL+A +AFIL HA + V+I D+EF + ++A
Sbjct: 76 VIAPNISEHFEVHFGVPMSGAVLNSINTRLDAEAIAFILVHAETKVLITDKEFSPIVKKA 135
Query: 135 LKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDE 194
L+M+ P +I I D + + QL G++ Y++ LE GD +F P++E
Sbjct: 136 LRMIPHK-------PLVIDIDDPNFNEGQLI-----GSLTYDQLLEEGDSDFESIRPKNE 183
Query: 195 WQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT 254
W +I+L YTSGTT PKGVV +RGAYL +++ + W M E V+LWTLPMFH NGW +
Sbjct: 184 WDAISLNYTSGTTGDPKGVVYHYRGAYLNAVSNVMSWSMGEHPVYLWTLPMFHCNGWCFP 243
Query: 255 WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 314
WS+AA GTS+ LR V A+ ++ I + V +FC AP+VLN + A P + + V
Sbjct: 244 WSIAATAGTSVSLRHVRAEPIFNLIRSEKVGYFCGAPIVLNMLNGAEPS-LKADINHPVK 302
Query: 315 VNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQ 374
V TAGAPPP S++ M GF++THTYGLTE GP+ VCAW EW+ E QA+L +RQ
Sbjct: 303 VMTAGAPPPASVIEGMEASGFKVTHTYGLTETYGPSVVCAWHDEWNEESPEKQAKLKSRQ 362
Query: 375 GVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHS 434
GVR+ LD L V D T +P+P DG+++GEI MRG+ VMKGYLKNP + AF GW HS
Sbjct: 363 GVRSPMLDQLMVADPETLEPMPKDGESVGEIFMRGNLVMKGYLKNPSTTQAAFDGGWLHS 422
Query: 435 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 494
GD+AV H D YIEIKDR KDVIISGGENISSVEVE +LY HP V E AVVA+ D++WGE+
Sbjct: 423 GDIAVWHSDGYIEIKDRSKDVIISGGENISSVEVEDILYRHPKVQEVAVVAKKDDKWGET 482
Query: 495 PCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRA 554
PCAF+T P + ++ E +S FCR M + PK+++F LPK++TGKIQK +LR
Sbjct: 483 PCAFITPMPNVEITEQ----EMIS-FCRDNMAHFKAPKTIIFGELPKTSTGKIQKFVLRQ 537
Query: 555 KAKE 558
+A E
Sbjct: 538 QANE 541
|
|
| TIGR_CMR|CPS_4259 CPS_4259 "AMP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1410 (501.4 bits), Expect = 2.8e-144, P = 2.8e-144
Identities = 278/544 (51%), Positives = 367/544 (67%)
Query: 15 ANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVS 74
ANY ALTP+ F+ RAA ++P + + V G +TW + ++RC RFASAL+K IG G TVS
Sbjct: 16 ANYMALTPISFLERAAFVYPDKTATVNGDIRHTWLEVFQRCSRFASALAKRGIGRGDTVS 75
Query: 75 VIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEA 134
VIAPN+ +E FG PM+GAVLNSIN RL+A +AFIL HA + V+I D+EF + ++A
Sbjct: 76 VIAPNISEHFEVHFGVPMSGAVLNSINTRLDAEAIAFILVHAETKVLITDKEFSPIVKKA 135
Query: 135 LKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDE 194
L+M+ P +I I D + + QL G++ Y++ LE GD +F P++E
Sbjct: 136 LRMIPHK-------PLVIDIDDPNFNEGQLI-----GSLTYDQLLEEGDSDFESIRPKNE 183
Query: 195 WQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT 254
W +I+L YTSGTT PKGVV +RGAYL +++ + W M E V+LWTLPMFH NGW +
Sbjct: 184 WDAISLNYTSGTTGDPKGVVYHYRGAYLNAVSNVMSWSMGEHPVYLWTLPMFHCNGWCFP 243
Query: 255 WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 314
WS+AA GTS+ LR V A+ ++ I + V +FC AP+VLN + A P + + V
Sbjct: 244 WSIAATAGTSVSLRHVRAEPIFNLIRSEKVGYFCGAPIVLNMLNGAEPS-LKADINHPVK 302
Query: 315 VNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQ 374
V TAGAPPP S++ M GF++THTYGLTE GP+ VCAW EW+ E QA+L +RQ
Sbjct: 303 VMTAGAPPPASVIEGMEASGFKVTHTYGLTETYGPSVVCAWHDEWNEESPEKQAKLKSRQ 362
Query: 375 GVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHS 434
GVR+ LD L V D T +P+P DG+++GEI MRG+ VMKGYLKNP + AF GW HS
Sbjct: 363 GVRSPMLDQLMVADPETLEPMPKDGESVGEIFMRGNLVMKGYLKNPSTTQAAFDGGWLHS 422
Query: 435 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 494
GD+AV H D YIEIKDR KDVIISGGENISSVEVE +LY HP V E AVVA+ D++WGE+
Sbjct: 423 GDIAVWHSDGYIEIKDRSKDVIISGGENISSVEVEDILYRHPKVQEVAVVAKKDDKWGET 482
Query: 495 PCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRA 554
PCAF+T P + ++ E +S FCR M + PK+++F LPK++TGKIQK +LR
Sbjct: 483 PCAFITPMPNVEITEQ----EMIS-FCRDNMAHFKAPKTIIFGELPKTSTGKIQKFVLRQ 537
Query: 555 KAKE 558
+A E
Sbjct: 538 QANE 541
|
|
| TAIR|locus:2171357 AT5G16340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1393 (495.4 bits), Expect = 1.8e-142, P = 1.8e-142
Identities = 278/558 (49%), Positives = 370/558 (66%)
Query: 7 IDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKH-YTWHQTYRRCRRFASALSKL 65
++++ +AN LTP+ F+ RAAT++ S+VYGS YTW +T RC R AS+LS +
Sbjct: 1 MEEMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSI 60
Query: 66 SIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 125
IG VSV++PN PAMYE QF PM+GA+LN+IN RL+A V+ +L H S ++ VD
Sbjct: 61 GIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDV 120
Query: 126 EFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA-LARGAIEYEKFLETGDP 184
LA EA+ MM + P L+VI D+ + + A L++ + Y+ +E GDP
Sbjct: 121 FSVDLAVEAVSMMTTDP------PILVVIADKEEEGGVADVADLSKFSYTYDDLIERGDP 174
Query: 185 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP 244
F W PE EW + L YTSGTT++PKGVV HRG ++MS++ + W + + V+LWTLP
Sbjct: 175 GFKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSVDSLIDWAVPKNPVYLWTLP 234
Query: 245 MFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED 304
+FH NGW+ W +AA+ GT++CLR+ A +Y I HGVTH C APVVLN ++ A+ E
Sbjct: 235 IFHSNGWTNPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLS-ATQES 293
Query: 305 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPF 364
PL + VN+ TAG+PPP ++L GF I+H YGLTE G CAWKP+W+ LP
Sbjct: 294 Q--PLNHPVNILTAGSPPPATVLLRAESIGFVISHGYGLTETAGVIVSCAWKPKWNHLPA 351
Query: 365 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424
+ARL ARQGVRT+ +DV+D + V +G+T+GEIVMRGS VM GYLK+P E
Sbjct: 352 SDRARLKARQGVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTE 411
Query: 425 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484
+A NGWF++GD+ V H D Y+EIKDR KD+II+GGEN+SSVEVE VLY P V E AVV
Sbjct: 412 KALKNGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTIPAVNEVAVV 471
Query: 485 ARPDERWGESPCAFVTLKPEADELDKGK-LAEDVSKFCRAKMPSYWVPKSVVFA-ALPKS 542
ARPDE WGE+PCAFV+LK GK E++ ++CR KMP Y VPK+V F LPKS
Sbjct: 472 ARPDEFWGETPCAFVSLKNGFS----GKPTEEELMEYCRKKMPKYMVPKTVSFMDELPKS 527
Query: 543 ATGKIQKHLLRAKAKEMG 560
+TGK+ K +LR AK+MG
Sbjct: 528 STGKVTKFVLRDIAKKMG 545
|
|
| TAIR|locus:2057249 AT2G17650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1385 (492.6 bits), Expect = 1.3e-141, P = 1.3e-141
Identities = 275/562 (48%), Positives = 370/562 (65%)
Query: 5 KDIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSK 64
+ I+ L + AN++ L+P+ F+ R+A ++ R S+V+GS +TW QTY+RC R ASAL+
Sbjct: 46 RTIEGLLRSPANFSPLSPITFLERSAKVYRDRTSLVFGSVKHTWFQTYQRCLRLASALTN 105
Query: 65 LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVD 124
L I G V+ +APNVPAM+E F PMAG +L +N RL+ + ++ +L+H+ + ++ VD
Sbjct: 106 LGISRGDVVAALAPNVPAMHELHFAVPMAGLILCPLNTRLDPSTLSVLLAHSEAKILFVD 165
Query: 125 QEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGA------IEYEKF 178
+ +A AL ++ A S+ K+ L++I + D E + + A EYE
Sbjct: 166 HQLLEIAHGALDLL-AKSDKTRKSLKLVLISQSNDDDDSDEDSSSTFASKYSFDYEYETL 224
Query: 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAV 238
L++GD EF P EW I++ YTSGTT+ PKGVV SHRGAYL SL + M+ V
Sbjct: 225 LKSGDSEFEIIKPRCEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVFLHQMSVYPV 284
Query: 239 FLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIA 298
+LWT+PMFH NGW W +AA GT+ICLR+V+ K ++ IA H VTH AP VLN I
Sbjct: 285 YLWTVPMFHCNGWCLVWGVAAQGGTNICLRKVSPKMIFKNIAMHKVTHMGGAPTVLNMIV 344
Query: 299 NASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPE 358
N + + PL + V + T G+PP P +L M + GF ++H YGLTE GP + C WKPE
Sbjct: 345 NYTVTEH-KPLPHRVEIMTGGSPPLPQILAKMEELGFNVSHLYGLTETYGPGTHCVWKPE 403
Query: 359 WDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 418
WDSL E + +L ARQGV+ + L+GLDV D T + VP DG T+GE++ RG+ VM GY K
Sbjct: 404 WDSLSLEERTKLKARQGVQHLGLEGLDVKDPLTMETVPDDGLTMGEVMFRGNTVMSGYFK 463
Query: 419 NPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLV 478
+ +A +AF WFHSGDLAVK+PD YIEIKDRLKDVIISGGENISSVEVE+VL H V
Sbjct: 464 DIEATRKAFEGDWFHSGDLAVKYPDGYIEIKDRLKDVIISGGENISSVEVERVLCSHQAV 523
Query: 479 LEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA 538
LEAAVVARPD WG++PC FV LK D + E++ FCR +P Y PK++VF
Sbjct: 524 LEAAVVARPDHHWGQTPCGFVKLKEGFDTIKP----EEIIGFCRDHLPHYMAPKTIVFGD 579
Query: 539 LPKSATGKIQKHLLRAKAKEMG 560
+PK++TGK+QK+LLR KA EMG
Sbjct: 580 IPKTSTGKVQKYLLRKKADEMG 601
|
|
| TAIR|locus:2171402 AAE5 "acyl activating enzyme 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1380 (490.8 bits), Expect = 4.3e-141, P = 4.3e-141
Identities = 272/561 (48%), Positives = 367/561 (65%)
Query: 7 IDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKH-YTWHQTYRRCRRFASALSKL 65
++ + +AN LTP+ F+ RAAT++ S+VYGS YTW +T RC R AS+LS +
Sbjct: 1 MEQMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSI 60
Query: 66 SIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 125
IG VSV++PN PAMYE QF PM+GA+LN+IN RL+A V+ +L H S ++ VD
Sbjct: 61 GIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCGSKLLFVDV 120
Query: 126 EFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA-LARGAIEYEKFLETGDP 184
LA EA+ MM + P L+ I D+ + + A + + Y+ + GD
Sbjct: 121 FSVDLAVEAISMMTTDP------PILVFIADKEEEGGDADVADRTKFSYTYDDLIHRGDL 174
Query: 185 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP 244
+F W PE EW + L YTSGTT++PKGVV HRG ++MS++ + W + + V+LWTLP
Sbjct: 175 DFKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSIDSLIDWTVPKNPVYLWTLP 234
Query: 245 MFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED 304
+FH NGWSY W +AA+ GT++CLR+ A +Y I HGVTH C APVVLN ++ A+ E
Sbjct: 235 IFHANGWSYPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLS-ATNE- 292
Query: 305 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPF 364
PL VN+ TAGAPPP ++L GF I+H YGLTE G CAWKP+W+ LP
Sbjct: 293 -FQPLNRPVNILTAGAPPPAAVLLRAESIGFVISHGYGLTETAGLNVSCAWKPQWNRLPA 351
Query: 365 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424
+ARL ARQGVRT+ +DV+D + + V +G+T+GEIVMRGS +M GYLK+P E
Sbjct: 352 SDRARLKARQGVRTVGFTEIDVVDPESGRSVERNGETVGEIVMRGSSIMLGYLKDPVGTE 411
Query: 425 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484
+A NGWF++GD+ V H D Y+EIKDR KD+II+GGEN+SSVEVE VLY +P V E AVV
Sbjct: 412 KALKNGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTNPAVNEVAVV 471
Query: 485 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSA 543
ARPD WGE+PCAFV+LK L + ++ ++CR KMP Y VPK+V F LPK++
Sbjct: 472 ARPDVFWGETPCAFVSLK---SGLTQRPTEVEMIEYCRKKMPKYMVPKTVSFVDELPKTS 528
Query: 544 TGKIQKHLLRAKAKEMGPVKM 564
TGK+ K +LR AK+MG ++
Sbjct: 529 TGKVMKFVLREIAKKMGTTRL 549
|
|
| TAIR|locus:2027012 AT1G21530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1329 (472.9 bits), Expect = 1.1e-135, P = 1.1e-135
Identities = 267/558 (47%), Positives = 371/558 (66%)
Query: 10 LPKISANYTALTPLWFINRAATLHPTRKSVVYGSKH-YTWHQTYRRCRRFASALSKLSIG 68
LP S N T LT L F++RAA+++ S+++ + +TW +T+ RC R ASAL+ SIG
Sbjct: 5 LPHPS-NSTPLTVLGFLDRAASVYGDCPSILHTANTVHTWSETHNRCLRIASALTSSSIG 63
Query: 69 L--GTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQE 126
+ G VSV+ PNVP++YE QF PM+GA+LN+IN RL+A ++ +L H+ S +V VD
Sbjct: 64 IKQGQVVSVVGPNVPSVYELQFAVPMSGAILNNINPRLDAHALSVLLRHSESRLVFVDHR 123
Query: 127 FFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIE-YEKFLETGDPE 185
SL EA+ + + + PHL+++ D+ ++ + + A ++ YE+ +E G+
Sbjct: 124 SISLVLEAVSLFTQHEK-----PHLVLLDDD----QENDSSSASDFLDTYEEIMERGNSR 174
Query: 186 FAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPM 245
F W P+ EWQ + L YTSGTT+SPKGVV+SHR ++++++ L W + V+LWTLPM
Sbjct: 175 FKWIRPQTEWQPMVLNYTSGTTSSPKGVVLSHRAIFMLTVSSLLDWSVPNRPVYLWTLPM 234
Query: 246 FHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT 305
FH NGW YTW AA+ T+IC R+V A +Y I H VTH CAAP+VLN + N P T
Sbjct: 235 FHANGWGYTWGTAAVGATNICTRRVDAPTIYNLIDKHNVTHMCAAPMVLNMLINY-PLST 293
Query: 306 ILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL-PF 364
PL N V V T+GAPPP +++ GF ++H+YGLTE +GP CAWKP+WD L P
Sbjct: 294 --PLKNPVQVMTSGAPPPATIISRAESLGFNVSHSYGLTETSGPVVSCAWKPKWDHLDPL 351
Query: 365 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424
E +ARL +RQGVRT+ +DV D +T + V DG ++GEIV RGS VM GY K+P+
Sbjct: 352 E-RARLKSRQGVRTLGFTEVDVRDRKTGKSVKHDGVSVGEIVFRGSSVMLGYYKDPQGTA 410
Query: 425 EAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483
+GWF+SGD+ V H D Y+EIKDR KDVII GGENISS E+E VLY +P+V EAAV
Sbjct: 411 ACMREDGWFYSGDIGVIHKDGYLEIKDRSKDVIICGGENISSAEIETVLYTNPVVKEAAV 470
Query: 484 VARPDERWGESPCAFVTLKPEADELDKGKLAE-DVSKFCRAKMPSYWVPKSVVFAA-LPK 541
VA+PD+ WGE+PCAFV+LK + + + E ++ +FC+ K+P Y VP+ V+F LPK
Sbjct: 471 VAKPDKMWGETPCAFVSLKCDNNGDGSVPVTEREIREFCKTKLPKYMVPRKVIFQEELPK 530
Query: 542 SATGKIQKHLLRAKAKEM 559
++TGKIQK LLR AK +
Sbjct: 531 TSTGKIQKFLLRQMAKTL 548
|
|
| TAIR|locus:2204360 AT1G75960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
Identities = 269/556 (48%), Positives = 359/556 (64%)
Query: 7 IDDLPKISANYTALTPLWFINRAATLHPTRKSVVYG-SKHYTWHQTYRRCRRFASALSKL 65
++DL +AN LT L F+ RAAT++ S+VYG S YTW +T RC ASALS +
Sbjct: 1 MEDLKPSAANSLPLTLLGFLERAATVYGDCTSIVYGNSTVYTWRETNHRCLCVASALSSI 60
Query: 66 SIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 125
IG VSV++ N P MYE QF PM+GA+LN+IN RL+A V+ +L H S ++ VD
Sbjct: 61 GIGRSDVVSVLSANTPEMYELQFSVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDF 120
Query: 126 EFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA-LARGAIEYEKFLETGDP 184
+ LA EA+ M+ L P L++I +E + E ++ Y + G+P
Sbjct: 121 FYSDLAVEAITML-------LNPPILVLIANEEEEEGGAEVTERSKFCYLYSDLITRGNP 173
Query: 185 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP 244
+F W P EW I + YTSGTT+SPKGVV HRG ++M+L+ W + + V+LWTLP
Sbjct: 174 DFKWIRPGSEWDPIVVNYTSGTTSSPKGVVHCHRGIFVMTLDSLTDWAVPKTPVYLWTLP 233
Query: 245 MFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED 304
+FH NGW+Y W +AA+ GT++C+R++ A ++Y I HGVTH AP+VL I +AS E
Sbjct: 234 IFHANGWTYPWGIAAVGGTNVCVRKLHAPSIYHLIRDHGVTHMYGAPIVLQ-ILSASQES 292
Query: 305 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPF 364
PL + VN TAG+ PP ++L GF ++H YGLTE G CAWKP W+ LP
Sbjct: 293 D-QPLKSPVNFLTAGSSPPATVLLRAESLGFIVSHGYGLTETAGVIVSCAWKPNWNRLPA 351
Query: 365 ETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424
QA+L +RQGVRT+ +DV+D + + V DG+T+GEIV+RGS +M GYLKNP +
Sbjct: 352 SDQAQLKSRQGVRTVGFSEIDVVDPESGRSVERDGETVGEIVLRGSSIMLGYLKNPIGTQ 411
Query: 425 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484
+F NGWF +GDL V H D Y+EIKDR KDVIISGGEN+SSVEVE VLY +P V EAAVV
Sbjct: 412 NSFKNGWFFTGDLGVIHGDGYLEIKDRSKDVIISGGENVSSVEVEAVLYTNPAVNEAAVV 471
Query: 485 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSA 543
ARPDE WGE+PCAFV+LKP L + +++ ++C+ KMP Y PK+V F LPK++
Sbjct: 472 ARPDEFWGETPCAFVSLKPG---LTRKPTDKEIIEYCKYKMPRYMAPKTVSFLEELPKTS 528
Query: 544 TGKIQKHLLRAKAKEM 559
TGKI K LL+ AK M
Sbjct: 529 TGKIIKSLLKEIAKNM 544
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8VZF1 | AEE7_ARATH | 6, ., 2, ., 1, ., 2 | 0.7258 | 0.9806 | 0.9806 | yes | no |
| Q5SKN9 | LCFCS_THET8 | 6, ., 2, ., 1, ., 3 | 0.3593 | 0.8787 | 0.9242 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.691 |
| 4th Layer | 6.2.1.27 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00033112001 | SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (567 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 569 | |||
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 0.0 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 0.0 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 0.0 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 0.0 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-142 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 1e-140 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 1e-133 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-130 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-103 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 5e-92 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 1e-90 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-88 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 3e-86 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 5e-82 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 8e-82 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 1e-80 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 2e-76 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 2e-75 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-73 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 1e-70 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 2e-69 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 1e-67 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 1e-66 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 5e-65 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 1e-64 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 1e-63 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 5e-63 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-61 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 4e-61 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 5e-61 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 6e-61 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 5e-60 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 3e-59 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 3e-55 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 1e-54 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-54 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 2e-54 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 6e-54 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 8e-54 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 4e-53 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 4e-50 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 1e-49 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 1e-49 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 2e-49 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 3e-49 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 8e-49 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-48 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 2e-48 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 3e-48 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 4e-46 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 2e-45 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 4e-45 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 4e-44 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 6e-44 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 1e-43 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-43 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 1e-42 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 2e-42 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 8e-41 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-40 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 3e-40 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 4e-39 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 5e-39 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 6e-39 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 6e-39 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 2e-38 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-37 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 2e-37 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 2e-37 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 3e-37 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 9e-37 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 1e-35 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 1e-35 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 1e-35 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 2e-35 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 2e-35 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 2e-35 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 7e-35 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 8e-35 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 2e-34 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 3e-34 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 3e-33 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 3e-33 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 1e-32 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 4e-32 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 1e-31 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 1e-30 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 2e-30 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 3e-30 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 3e-29 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 1e-28 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 3e-28 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 7e-28 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 1e-27 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 4e-27 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 7e-27 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 9e-27 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 1e-26 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 2e-26 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 7e-25 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 9e-25 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 3e-24 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 7e-24 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 9e-24 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 3e-23 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 3e-23 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 1e-22 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 2e-22 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-22 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 3e-22 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 5e-22 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 7e-22 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 2e-21 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-21 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-21 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-20 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-20 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 2e-20 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 1e-19 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 2e-19 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 2e-19 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 2e-17 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 5e-17 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 6e-17 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-16 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 2e-16 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 3e-16 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 1e-15 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 2e-15 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 3e-15 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-14 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 1e-14 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 1e-14 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 2e-14 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 4e-14 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 6e-14 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 8e-14 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 4e-13 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 3e-12 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 4e-12 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 6e-12 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 8e-12 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 1e-11 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 6e-11 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 1e-10 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 2e-10 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-10 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 4e-10 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 5e-10 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 6e-10 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 6e-10 | |
| PRK08308 | 414 | PRK08308, PRK08308, acyl-CoA synthetase; Validated | 7e-10 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 1e-09 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 1e-09 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 3e-09 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 3e-09 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 4e-09 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 6e-09 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 6e-09 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-08 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 3e-08 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 3e-08 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 3e-08 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 4e-08 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 1e-07 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 1e-07 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 1e-07 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 1e-07 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 1e-07 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 2e-07 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 3e-07 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 4e-07 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 6e-07 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 7e-07 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 2e-06 | |
| pfam13193 | 43 | pfam13193, DUF4009, Domain of unknown function (DU | 2e-06 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 5e-06 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 5e-06 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 7e-06 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 8e-06 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 8e-06 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 9e-06 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 1e-05 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 2e-05 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 2e-05 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 2e-05 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 3e-05 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 4e-05 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 1e-04 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 1e-04 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 1e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-04 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 3e-04 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 4e-04 | |
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 5e-04 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 0.001 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 0.002 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 0.002 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 0.003 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 0.003 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 1051 bits (2719), Expect = 0.0
Identities = 432/563 (76%), Positives = 491/563 (87%)
Query: 1 MVGVKDIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFAS 60
M +DIDDLPK +ANYTALTPLWF+ RAA +HPTRKSVV+GS YTW QTY+RCRR AS
Sbjct: 1 MAKERDIDDLPKNAANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLAS 60
Query: 61 ALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAV 120
AL+K SIG G+TV+VIAPN+PAMYEA FG PMAGAV+N +NIRLNA +AF+L H+ S V
Sbjct: 61 ALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEV 120
Query: 121 VIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLE 180
V+VDQEFF+LAEEALK++ + K P LIVIGD +CD K L+YAL +GAIEYEKFLE
Sbjct: 121 VMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLE 180
Query: 181 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFL 240
TGDPEFAWKPP DEWQSIALGYTSGTTASPKGVV+ HRGAYLM+L+ ALIWGMNEGAV+L
Sbjct: 181 TGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYL 240
Query: 241 WTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA 300
WTLPMFH NGW +TW+LAALCGT+ICLRQVTAKA+Y+AIA +GVTHFCAAPVVLN I NA
Sbjct: 241 WTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNA 300
Query: 301 SPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD 360
+TILPL VV+V TAGA PPPS+LFAMS+KGFR+THTYGL+E GP++VCAWKPEWD
Sbjct: 301 PKSETILPLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWD 360
Query: 361 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP 420
SLP E QARLNARQGVR I L+GLDV+D +T +PVPADGKT+GEIVMRG+ VMKGYLKNP
Sbjct: 361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNP 420
Query: 421 KANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 480
KANEEAFANGWFHSGDL VKHPD YIEIKDR KD+IISGGENISS+EVE V+Y HP VLE
Sbjct: 421 KANEEAFANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLE 480
Query: 481 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALP 540
A+VVARPDERWGESPCAFVTLKP D+ D+ LAED+ KFCR ++P+YWVPKSVVF LP
Sbjct: 481 ASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVFGPLP 540
Query: 541 KSATGKIQKHLLRAKAKEMGPVK 563
K+ATGKIQKH+LRAKAKEMGPVK
Sbjct: 541 KTATGKIQKHVLRAKAKEMGPVK 563
|
Length = 567 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 842 bits (2178), Expect = 0.0
Identities = 310/538 (57%), Positives = 376/538 (69%), Gaps = 18/538 (3%)
Query: 17 YTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVI 76
Y LTPL F+ RAA ++P R +VVYG + YT+ +TY RCRR ASALSKL IG G V+V+
Sbjct: 1 YVPLTPLSFLERAAKVYPDRTAVVYGDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVL 60
Query: 77 APNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALK 136
APN PAM EA FG PMAGAVL +N RL+A +AFIL+H+ + V+ VDQEF SLAEEAL
Sbjct: 61 APNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALA 120
Query: 137 MMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQ 196
++ ++ A +YE L GDP+ PP+DEW
Sbjct: 121 LLST------------KEIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWD 168
Query: 197 SIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWS 256
I+L YTSGTT +PKGVV +HRGAYL +L + WGM + V+LWTLPMFH NGW + W+
Sbjct: 169 PISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLWTLPMFHCNGWCFPWA 228
Query: 257 LAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVN 316
+ A+ GT +CLR+V A A+Y I H VTH C AP VLN +ANA PE LPL V V
Sbjct: 229 ITAVGGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNMLANA-PEADKLPLPRPVRVM 287
Query: 317 TAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGV 376
TAGAPPPP+++ M + GF +TH YGLTE GP +VC WKPEWD+LP E +ARL ARQGV
Sbjct: 288 TAGAPPPPAVIKKMEELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGV 347
Query: 377 RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGD 436
R + L+ +DV+D T + VP DGKTIGEIVMRG+ VMKGY KNP+A EEAFA GWFHSGD
Sbjct: 348 RYVGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGD 407
Query: 437 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC 496
LAV HPD YIEIKDR KD+IISGGENISS+EVE VLY HP VLEAAVVARPDE+WGE+PC
Sbjct: 408 LAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPC 467
Query: 497 AFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRA 554
AFV LKP E++ ++CR K+ + VPK+V F LPK+ATGKIQK +LR
Sbjct: 468 AFVVLKP-----GASVTEEELIEYCREKLAHFKVPKTVEFVELPKTATGKIQKFVLRE 520
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 823 bits (2127), Expect = 0.0
Identities = 302/555 (54%), Positives = 389/555 (70%), Gaps = 17/555 (3%)
Query: 8 DDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSI 67
L + +ANY LTPL F+ RAA ++P R +V++G + TW +TY RCRR ASAL++ I
Sbjct: 6 QGLDRNAANYVPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGI 65
Query: 68 GLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEF 127
G G TV+V+ PN+PAM EA FG PMAGAVLN++N RL+A +AF+L H + V+IVD EF
Sbjct: 66 GRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEF 125
Query: 128 FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFA 187
+A EAL ++ P +VI D + GA++YE FL +GDP+FA
Sbjct: 126 AEVAREALALLPG--------PKPLVIDV---DDPEYPGGRFIGALDYEAFLASGDPDFA 174
Query: 188 WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFH 247
W P DEW +IAL YTSGTT +PKGVV HRGAYL +L+ L WGM + V+LWTLPMFH
Sbjct: 175 WTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFH 234
Query: 248 GNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 307
NGW + W++AA GT++CLR+V K ++ I HGVTH+C AP+VL+A+ NA P +
Sbjct: 235 CNGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINA-PAEWRA 293
Query: 308 PLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQ 367
+ + V+ AGA PP +++ M + GF +TH YGLTE GPA+VCAW+PEWD+LP + +
Sbjct: 294 GIDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDER 353
Query: 368 ARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 427
A+L ARQGVR +G+ V+D T QPVPADG+TIGEI+ RG+ VMKGYLKNPKA EEAF
Sbjct: 354 AQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF 413
Query: 428 ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487
A GWFH+GDLAV HPD YI+IKDR KD+IISGGENISS+EVE VLY HP VL AAVVA+P
Sbjct: 414 AGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKP 473
Query: 488 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKI 547
D +WGE PCAFV LK A E++ CR + + VPK+VVF LPK++TGKI
Sbjct: 474 DPKWGEVPCAFVELKDGASA-----TEEEIIAHCREHLAGFKVPKAVVFGELPKTSTGKI 528
Query: 548 QKHLLRAKAKEMGPV 562
QK +LR +AK + +
Sbjct: 529 QKFVLREQAKSLKAI 543
|
Length = 545 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 559 bits (1441), Expect = 0.0
Identities = 268/563 (47%), Positives = 350/563 (62%), Gaps = 18/563 (3%)
Query: 7 IDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLS 66
+D+L AN LTP+ F+ RA+ +P R S++YG +TW QTY RC R A++L L+
Sbjct: 1 MDNLALCEANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 67 IGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQE 126
I VSV+APN PAMYE F PMAGAVLN IN RL+AT +A IL HA ++ VD+
Sbjct: 61 ITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRS 120
Query: 127 FFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEF 186
F LA E L ++ + +L VI D + + ++YE ++ G+P
Sbjct: 121 FEPLAREVLHLLSSEDS----NLNLPVIFIHEIDFPKRPSS---EELDYECLIQRGEPTP 173
Query: 187 AWKPP----EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWT 242
+ +DE I+L YTSGTTA PKGVV+SHRGAYL +L+ + W M V+LWT
Sbjct: 174 SLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWT 233
Query: 243 LPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASP 302
LPMFH NGW++TW AA GTS+C+R VTA +Y I H VTH C P V N + +
Sbjct: 234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNS 293
Query: 303 EDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL 362
D + P + V+V T G+PPP +L+ + + GF++ H YGLTE TGP C W+ EW+ L
Sbjct: 294 LD-LSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRL 352
Query: 363 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA 422
P Q L ARQGV + L +DV + T + VP DGKT+GEIV++GS +MKGYLKNPKA
Sbjct: 353 PENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKA 412
Query: 423 NEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 482
EAF +GW ++GD+ V HPD ++EIKDR KD+IISGGENISSVEVE VLY +P VLE A
Sbjct: 413 TSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETA 472
Query: 483 VVARPDERWGESPCAFVTLK--PEADELDKGKLAE---DVSKFCRAKMPSYWVPKSVVF- 536
VVA P WGE+PCAFV L+ E KL D+ ++CR +P + P+ VVF
Sbjct: 473 VVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFL 532
Query: 537 AALPKSATGKIQKHLLRAKAKEM 559
LPK+ GKI K LR AK +
Sbjct: 533 QELPKNGNGKILKPKLRDIAKGL 555
|
Length = 579 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 421 bits (1086), Expect = e-142
Identities = 183/536 (34%), Positives = 261/536 (48%), Gaps = 33/536 (6%)
Query: 29 AATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQF 88
A HP +++V + + T+ + R R A+AL L + G V+V N EA F
Sbjct: 15 GARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYF 74
Query: 89 GAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKT 148
P GAVL+ INIRL +A+IL+ A VV+VD EF L L +L T
Sbjct: 75 AVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAIL--------PQLPT 126
Query: 149 PHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTA 208
+++ + + EYE+ L F + DE + A+ YTSGTT
Sbjct: 127 VRTVIVEGDGPAAPLAPEVG-----EYEELLAAASDTFDFPDI-DENDAAAMLYTSGTTG 180
Query: 209 SPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAAL--CGTSIC 266
PKGVV+SHR +L SL ++ V+L +PMFH + W AL +
Sbjct: 181 HPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAW--GLPYLALMAGAKQVI 238
Query: 267 LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSL 326
R+ + + I T VT F A P + + A P + +++ V GA PP+L
Sbjct: 239 PRRFDPENLLDLIETERVTFFFAVPTIWQMLLKA-PRAYFVDFSSLRLVIYGGAALPPAL 297
Query: 327 LFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLD 385
L +K G + YG+TE T P PE T+ R G R +
Sbjct: 298 LREFKEKFGIDLVQGYGMTE-TSPVVSVLP-PEDQLPGQWTKRR---SAG-RPLPGVEAR 351
Query: 386 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNY 445
++D + +P DG +GEI++RG +M+GY P+A E GW H+GD+ D Y
Sbjct: 352 IVDDDGD-ELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGY 410
Query: 446 IEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEA 505
+ I DR+KDVIISGGENI E+E LY HP V E AV+ PDE+WGE P A V LKP A
Sbjct: 411 LYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGA 470
Query: 506 DELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKEMG 560
LD A+++ F R ++ + +PK + F LP+++ GKI K +LR + E
Sbjct: 471 -TLD----AKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEGK 521
|
Length = 521 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 416 bits (1072), Expect = e-140
Identities = 196/541 (36%), Positives = 272/541 (50%), Gaps = 37/541 (6%)
Query: 25 FINRAATLHPTRKSVVY----GSKH-YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPN 79
+ AA R+ +V GS H YT+ YRR RR A+AL L + G V+ +A N
Sbjct: 1 ILEHAARYFGDRE-IVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWN 59
Query: 80 VPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMME 139
E F P GAVL+++N RL+ +A+I++HA V+ VD +F L E +
Sbjct: 60 THRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRLP 119
Query: 140 ANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA 199
++V D L YE+ LE PE+ W P DE +
Sbjct: 120 -------TVKAVVVYDDADMPETSLP-----NVYAYEELLEEESPEYEW-PELDENTAAG 166
Query: 200 LGYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWSL 257
L YTSGTT +PKGVV SHR L +L AL G++E L +PMFH N W ++
Sbjct: 167 LCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTVLPVVPMFHVNAWGLPYA- 225
Query: 258 AALCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA--SPEDTILPLTNVV 313
A + G + L R + ++ I VT P + + N + + L VV
Sbjct: 226 ATMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLGLLNYLEANGKDLSSLRRVV 285
Query: 314 NVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNAR 373
G+ P SL+ + ++G + H +G+TE + +V KP LP E + L A+
Sbjct: 286 ---VGGSALPRSLIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAK 342
Query: 374 QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH 433
QG R + L ++D N +P DGKT+GE+V+RG V Y K+P+ EE +GWF
Sbjct: 343 QG-RPVPGVELRIVDDEGN-ELPWDGKTVGELVVRGPWVTGSYYKDPEKTEELTRDGWFR 400
Query: 434 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493
+GD+AV D YI+I DR KDVI SGGE ISSVE+E L HP V EAAVV P E+WGE
Sbjct: 401 TGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGE 460
Query: 494 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLL 552
P A V LKP A E++ + K+ +W+P VVF +PK++ GK K L
Sbjct: 461 RPLAVVVLKPGAKV-----TEEELLEHLAKKVAKWWLPDRVVFVDEIPKTSVGKFDKKAL 515
Query: 553 R 553
R
Sbjct: 516 R 516
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 396 bits (1019), Expect = e-133
Identities = 153/547 (27%), Positives = 229/547 (41%), Gaps = 53/547 (9%)
Query: 20 LTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPN 79
R + T+ + Y+R RR L L +G+G V+ + N
Sbjct: 2 ERAAALFGRKEVVSRLH---TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFN 58
Query: 80 VPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMME 139
EA F P GAVL++ N RL+ +A+IL+HA V++ D L E ++
Sbjct: 59 HFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK 118
Query: 140 ANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA 199
+ E E E A E +
Sbjct: 119 TVQHFV---------------VMDEKAP------EGYLAYEEALGEEADPVRVPERAACG 157
Query: 200 LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA-----VFLWTLPMFHGNGWSYT 254
+ YT+GTT PKGVV SHR L+ ++ A V L +PMFH N W
Sbjct: 158 MAYTTGTTGLPKGVVYSHRALV---LHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLP 214
Query: 255 WSLAALCGTSICLRQVTA-KAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI---LPLT 310
++ + + ++ GVT P V A+A+ ++ L
Sbjct: 215 YAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY--LESTGHRLKTL 272
Query: 311 NVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARL 370
+ G+ P SL+ + G + YGLTE + K +SL E + L
Sbjct: 273 --RRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTL 330
Query: 371 NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE-EAFAN 429
A+ G+ L V D +PVP DGK +GE+ ++G + GY N +A +
Sbjct: 331 KAKTGLPIPL-VRLRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPD 388
Query: 430 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489
G+F +GD+AV + Y+EIKDRLKD+I SGGE ISSV++E L HP V EAAVVA P
Sbjct: 389 GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHP 448
Query: 490 RWGESPCAFVTLK-PEADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFAA-LPKSATGK 546
+W E P A V + + E++++ + +P + VFA +P+++ GK
Sbjct: 449 KWQERPLAVVVPRGEKPTP-------EELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGK 501
Query: 547 IQKHLLR 553
K LR
Sbjct: 502 FLKRALR 508
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 391 bits (1006), Expect = e-130
Identities = 183/557 (32%), Positives = 253/557 (45%), Gaps = 48/557 (8%)
Query: 20 LTPLWFINRAATLHPTRKSVVYG--SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIA 77
LT + RAA +P R ++++ T+ + RR R A+AL L + G V+++
Sbjct: 11 LTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILL 70
Query: 78 PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 137
PN P A A AGAV +N RL +A+IL+ A + V+I EF +L E
Sbjct: 71 PNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVA-- 128
Query: 138 MEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQS 197
E ++++GD A R I E G A P D
Sbjct: 129 -----EALPVVLVVLLVGD----------ADDRLPITLEALAAEGPGPDADARPVDPDDL 173
Query: 198 IALGYTSGTTASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 255
L YTSGTT PKGVV++HR A + AL G+ V L LP+FH G
Sbjct: 174 AFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGL 233
Query: 256 SLAALCGTSICL---RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 312
L G ++ L + V I + VT P L + + +D +++
Sbjct: 234 LAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSL 293
Query: 313 VNVNTAGAPPPPSLLFAMSQKG--FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARL 370
V + GAP PP LL ++ I YGLTE + ++
Sbjct: 294 RLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLA---------- 343
Query: 371 NARQGVRTICLDGLDV--IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 428
+ G L G++V +D + +P +GEI +RG VMKGY P+A EAF
Sbjct: 344 --KPGSVGRPLPGVEVRIVDPDGGEVLP---GEVGEIWVRGPNVMKGYWNRPEATAEAFD 398
Query: 429 N-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487
GW +GDL D Y+ I RLKD+IISGGENI E+E VL HP V EAAVV P
Sbjct: 399 EDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVP 458
Query: 488 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGK 546
DERWGE A V LKP D AE++ F R ++ Y VP+ VVF LP++A+GK
Sbjct: 459 DERWGERVVAVVVLKPGGDA---ELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGK 515
Query: 547 IQKHLLRAKAKEMGPVK 563
I + LR + + +
Sbjct: 516 IDRRALREEYRAEPRLD 532
|
Length = 534 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 313 bits (805), Expect = e-103
Identities = 126/361 (34%), Positives = 173/361 (47%), Gaps = 35/361 (9%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 261
YTSGTT PKGV+++HR ++N ++ G V+L P++H G + A
Sbjct: 8 YTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFLLPALAAG 67
Query: 262 GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAP 321
GT + + + +AV I H VTH P + + L+++ + AP
Sbjct: 68 GTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARY-DLSSLRLIIYGAAP 126
Query: 322 PPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLP-------FETQARLNAR 373
P L AM + G YG+TE TGP + +W + R
Sbjct: 127 MPAELKRAMIEWFGPVFVQGYGMTE-TGPTTTLLSPEDWLRKLGSVGRPVPGVEVR---- 181
Query: 374 QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH 433
++D +P +GEIV+RG VM GY P+A EA +GW H
Sbjct: 182 ------------IVDEDGR-ELPP--GEVGEIVVRGPAVMAGYWNRPEATAEALRDGWLH 226
Query: 434 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493
+GDL D Y+ I DR KD+IISGGENI EVE VL HP V + AV+ PDE WGE
Sbjct: 227 TGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGE 286
Query: 494 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLL 552
+ A V L+P A AE++ FCR ++ Y VPKSV F LP++A+GKI K L
Sbjct: 287 AVVAVVVLRPGATL-----DAEELIAFCRERLAGYKVPKSVEFVDELPRNASGKILKREL 341
Query: 553 R 553
R
Sbjct: 342 R 342
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 290 bits (744), Expect = 5e-92
Identities = 158/546 (28%), Positives = 232/546 (42%), Gaps = 98/546 (17%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMY 84
+ RAA P R ++ + + T+ + RFA+ L +L + G V+++ PN P
Sbjct: 4 LLERAARRFPDRPALTFFGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFP 63
Query: 85 EAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEG 144
A FG AGAV+ +N + L+ + + V+IV F E+AL +
Sbjct: 64 IAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISF----EDALA----SGAP 115
Query: 145 KLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA-LGYT 203
L P+D +A L YT
Sbjct: 116 LPLPVEL--------------------------------------SPDD----LAVLQYT 133
Query: 204 SGTTASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 261
GTT PKG +++HR A + + + FL LP+FH + ++ L
Sbjct: 134 GGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTALPLFH----IFGLTVNMLL 189
Query: 262 G-----TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVN 316
G T++ + V I + T F P + NA+ N PE +++
Sbjct: 190 GLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNALLNH-PEFKKYDFSSLRLCI 248
Query: 317 TAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDS------LPF-ETQA 368
+ GAP P + +K G + YGLTE T P + + LP T+
Sbjct: 249 SGGAPLPVEVAERFEEKTGAPLVEGYGLTE-TSPV-TTVNPLDGERKPGSIGLPLPGTEV 306
Query: 369 RLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 428
+ ++D N +P G+ +GE+V+RG VMKGY P+ E
Sbjct: 307 K----------------IVDDEGN-ELP-PGE-VGELVVRGPQVMKGYWNRPEETAEVLT 347
Query: 429 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488
+GW +GD+ D Y I DR KD+II GG N+ E+E+VLY HP VLEAAVV PD
Sbjct: 348 DGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPD 407
Query: 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKI 547
GE+ AFV LK A E++ FCR ++ +Y VP+ V F LPKSA GKI
Sbjct: 408 PYRGEAVKAFVVLKEGASL-----TEEELIAFCRERLAAYKVPRQVEFRDELPKSAVGKI 462
Query: 548 QKHLLR 553
+ LR
Sbjct: 463 LRRELR 468
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 285 bits (730), Expect = 1e-90
Identities = 121/444 (27%), Positives = 181/444 (40%), Gaps = 39/444 (8%)
Query: 47 TWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNA 106
T+ + R R A+AL L +G G V+++ PN P A AGA ++ L A
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 107 TVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEY 166
+A+IL + + V+I D E E L KL ++I +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLL--------KLLVLLALIIVGD--------- 103
Query: 167 ALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLN 226
G + L G PP D + YTSGTT PKGV+++HR ++
Sbjct: 104 -DGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAG 162
Query: 227 GALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR--QVTAKAVYTAIATHGV 284
A +G+ G L LP+ + GT + + + + I + V
Sbjct: 163 LAERFGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKV 222
Query: 285 THFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ--KGFRITHTYG 342
T P +L + A PE+ L+++ V + G P PP LL + + G + + YG
Sbjct: 223 TVLYGVPTLLRLLLKA-PEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYG 281
Query: 343 LTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTI 402
TE T A+ + + V+D +PVP +
Sbjct: 282 PTETTVVATANLPGDPEVKPGSIGRPLPGVE----------VKVLDEEG-EPVPPG--EV 328
Query: 403 GEIVMRGSCVMKGYLKNPKANEEAF-ANGWF--HSGDLAVKHPDNYIEIKDRLKDVIISG 459
GE+ +RG V +GYL +P+ E F +GW +GDL D Y+EI R D +
Sbjct: 329 GELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIR 388
Query: 460 GENISSVEVEKVLYLHPLVLEAAV 483
GE I E+E VL HP V EAAV
Sbjct: 389 GERIEPGEIEAVLLEHPGVAEAAV 412
|
Length = 412 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 276 bits (708), Expect = 2e-88
Identities = 128/359 (35%), Positives = 180/359 (50%), Gaps = 27/359 (7%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 261
YTSGTT PKG +++HR + A G+ EG L +P+FH G +
Sbjct: 9 YTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLGVLASLTA 68
Query: 262 G-TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGA 320
G T + + + A I +T P + A+ P+ L+++ + GA
Sbjct: 69 GATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEH-PDFDKFDLSSLRTGISGGA 127
Query: 321 PPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT 378
P PP L+ + ++ IT YG+TE +G + + ++ P T R
Sbjct: 128 PVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRP-GTVGRP-------- 178
Query: 379 ICLDGLDV--IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEA-FANGWFHSG 435
L G++V +D VP +GEI +RG VMKGY +P+A EA A+GW H+G
Sbjct: 179 --LPGVEVKIVDPDGG-EVPPG--EVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTG 233
Query: 436 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 495
DL D Y+ I R+KD+II GGENI E+E+ L HP V EAAVV PDER GE
Sbjct: 234 DLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVV 293
Query: 496 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLR 553
AFV LKP A L E++ FCR ++ + VP+ V F LP++A+GKIQK LR
Sbjct: 294 AAFVVLKPGA-TLT----EEELIAFCRGRLARFKVPRYVRFVDELPRTASGKIQKFKLR 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 276 bits (708), Expect = 3e-86
Identities = 175/540 (32%), Positives = 256/540 (47%), Gaps = 51/540 (9%)
Query: 28 RAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQ 87
RAA +++ V+G + T+ + R RR A+AL+ L IG G V++ APN P A
Sbjct: 13 RAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA 72
Query: 88 FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 147
GA AGAV+ +N R A A+IL+ + + V F + A +
Sbjct: 73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSA----------TTR 122
Query: 148 TPHL--IVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSG 205
P L +VI C++++ + + FL GDP + + + L +TSG
Sbjct: 123 LPALEHVVI----CETEEDD-PHTEKMKTFTDFLAAGDPAERAPEVDPDDVADIL-FTSG 176
Query: 206 TTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC--GT 263
TT PKG +++HR + + A G+ EG +L P FH G+ A L T
Sbjct: 177 TTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGV-NAPLMRGAT 235
Query: 264 SICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAI---ANASPEDTILPLTNVVNVNTAGA 320
+ L V+ I T +T P + N++ + S ED L+++ T A
Sbjct: 236 ILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAED----LSSLRLAVTGAA 291
Query: 321 PPPPSLLFAMSQK-GFRITHT-YGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT 378
P +LL + G I T YGL+E +G + + + A
Sbjct: 292 SMPVALLERFESELGVDIVLTGYGLSEASGVTTFN---------RLDDDRKTVAGTIGTA 342
Query: 379 ICLDGLDV-IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGD 436
I G++ I + VP +GE+++RG VMKGY +P+A A A+GW H+GD
Sbjct: 343 I--AGVENKIVNELGEEVPVG--EVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGD 398
Query: 437 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC 496
L + Y+ I DR KD+ I GG N+ EVE+VLY HP V EAAV+ PDER GE
Sbjct: 399 LGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGK 458
Query: 497 AFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLRAK 555
A+V LKP A EL E++ +CR + Y VP+S+ F LPK+ATGK+ K LR K
Sbjct: 459 AYVVLKPGA-ELT----EEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALREK 513
|
Length = 513 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 266 bits (681), Expect = 5e-82
Identities = 171/544 (31%), Positives = 264/544 (48%), Gaps = 36/544 (6%)
Query: 26 INRAATLHPTRKSV---VYGSKHYT-WHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVP 81
I+ AA +H R+ V V G T + Q + R + + AL + I LG V+ IA N
Sbjct: 16 IDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTW 75
Query: 82 AMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEAN 141
EA +G GA+ +++N RL +A+I++HA VVI D F + E+
Sbjct: 76 RHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIA------ 129
Query: 142 SEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALG 201
KL + V+ D+ + + A+ YE+++ D +FAWK DE + +
Sbjct: 130 --DKLPSVERYVV---LTDAAHMPQTTLKNAVAYEEWIAEADGDFAWKT-FDENTAAGMC 183
Query: 202 YTSGTTASPKGVVVSHRGAYLMSL--NGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 259
YTSGTT PKGV+ SHR L +L N G + L +P+FH N W +S +
Sbjct: 184 YTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPS 243
Query: 260 LCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVV-LNAIANASPEDTILPLTNVVNVN 316
+ GT + + ++ +VY + T VT P V L + E LP +V
Sbjct: 244 M-GTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVC- 301
Query: 317 TAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGV 376
G+ P S++ A G + H +G+TE++ ++ A KP + LP + + + +QG
Sbjct: 302 -GGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQG- 359
Query: 377 RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSG 435
+ + D + +P DGKT G + +RG V Y + + E +G+F +G
Sbjct: 360 YPPFGVEMKITDDAGKE-LPWDGKTFGRLKVRGPAVAAAYYR---VDGEILDDDGFFDTG 415
Query: 436 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 495
D+A Y+ I DR KDVI SGGE ISS+++E + HP V EAAV+ +W E P
Sbjct: 416 DVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERP 475
Query: 496 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRA 554
V LKP + E++ K+ K+ +W+P V F A+P +ATGKI K LR
Sbjct: 476 LLIVQLKP-----GETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALRE 530
Query: 555 KAKE 558
+ K+
Sbjct: 531 QFKD 534
|
Length = 542 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 8e-82
Identities = 151/547 (27%), Positives = 244/547 (44%), Gaps = 56/547 (10%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMY 84
+ R+A +P + ++V+G + +T+ + R A+AL L + G V+ + N A
Sbjct: 16 ILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYA 75
Query: 85 EAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEG 144
AGAV +N L +A+IL H+ + +VD AE AL ++ ++
Sbjct: 76 LLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLI 135
Query: 145 KLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTS 204
L++ G E+ G +++ + E G D+ + YTS
Sbjct: 136 LS----LVLGGREAPG----------GWLDFADWAEAGSVAEPDVELADD-DLAQILYTS 180
Query: 205 GTTASPKGVVVSHRGAYLMSLNGALIW---------GMNEGAVFLWTLPMFHGNGWS-YT 254
GT + PKG +++HR ALI M+ + L LP++H +
Sbjct: 181 GTESLPKGAMLTHR---------ALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFL 231
Query: 255 WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 314
+ T++ L + + I +T F A P V ++ P+ L+++
Sbjct: 232 GPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLR-HPDFDTRDLSSLRK 290
Query: 315 VNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 372
+ P +L + ++ G R + YG TE+ A+V L E R
Sbjct: 291 GYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATV---------LGPEEHLRRPG 341
Query: 373 RQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF 432
G + ++ V+D V +GEIV R +M GY +P+ EAF GWF
Sbjct: 342 SAGRPVLNVE-TRVVDDD-GNDVAPG--EVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWF 397
Query: 433 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 492
HSGDL V + YI + DR KD+I +GGEN++S EVE+ LY HP V E AV+ PD +W
Sbjct: 398 HSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWI 457
Query: 493 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHL 551
E+ A V K A + +++ CRA++ + VPK V+F LP++ +GKI K
Sbjct: 458 EAVTAVVVPKAGAT-VT----EDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRE 512
Query: 552 LRAKAKE 558
LR +
Sbjct: 513 LRERYAG 519
|
Length = 523 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 262 bits (672), Expect = 1e-80
Identities = 170/535 (31%), Positives = 259/535 (48%), Gaps = 50/535 (9%)
Query: 40 VYGSKH-YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98
V G H YT+ RR ++ A AL+ L + G V +A N EA +G +GAV +
Sbjct: 33 VEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCH 92
Query: 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKT-PHLIVIGDE 157
+IN RL +A+I++HA V+ D F L + + + + D
Sbjct: 93 TINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDAL--------APQCPNVKGWVAMTDA 144
Query: 158 S---CDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVV 214
+ S L + YE + D ++ W P DE Q+ +L YTSGTT +PKG +
Sbjct: 145 AHLPAGSTPL--------LCYETLVGAQDGDYDW-PRFDENQASSLCYTSGTTGNPKGAL 195
Query: 215 VSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLAALCGTSICL--RQV 270
SHR L + AL M A L +PMFH N W +S A L G + L +
Sbjct: 196 YSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYS-APLTGAKLVLPGPDL 254
Query: 271 TAKAVYTAIATHGVTHFCAAPVV----LNAIANASPEDTILPLTNVVNVNTAGAPPPPSL 326
K++Y I VT P V LN + A L + + G+ PP++
Sbjct: 255 DGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG-----LRFSTLRRTVIGGSACPPAM 309
Query: 327 LFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLD 385
+ + G + H +G+TE++ ++C K + LP + Q +L +QG R I G+D
Sbjct: 310 IRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQG-RVIY--GVD 366
Query: 386 V-IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDN 444
+ I + +P DGK G++ +RG V+ Y + + +GWF +GD+A D
Sbjct: 367 MKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRG---DASPLVDGWFPTGDVATIDADG 423
Query: 445 YIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPE 504
+++I DR KDVI SGGE ISS+++E V HP V EAA +A +W E P V +P
Sbjct: 424 FMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPG 483
Query: 505 ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLRAKAKE 558
A E+ + E++ F K+ +W+P VVF A+P +ATGK+QK LR + ++
Sbjct: 484 A-EVTR----EELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRD 533
|
Length = 539 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 2e-76
Identities = 116/359 (32%), Positives = 158/359 (44%), Gaps = 23/359 (6%)
Query: 200 LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 259
L YTSGTT PKGV+ +H + G+ V L P+ H G+ Y L
Sbjct: 98 LLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPSPLAHITGFLYGLELPL 157
Query: 260 LCGTSICLRQV-TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTA 318
L G ++ L+ I HGVT A L + A + L ++
Sbjct: 158 LLGATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAA-ADAAGPDLPSLRVFLCG 216
Query: 319 GAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVR 377
GAP P L ++ G ++ YG+TE +V D T R VR
Sbjct: 217 GAPVPRELARRAAEALGAKVVRAYGMTE-VPLVTVGTPDDP-DDKRAATDGRPVPGVEVR 274
Query: 378 TICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDL 437
++D N VP GE+ +RG + GYL P E +GWF +GDL
Sbjct: 275 --------IVDDDGN-DVPPG--EEGELQVRGPQLFLGYLDPPDNTEAFTDDGWFRTGDL 323
Query: 438 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497
D Y+ I R KD+II GGENIS+ E+E +L HP V E AVVA PDER GE CA
Sbjct: 324 GRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCA 383
Query: 498 FVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKS-VVFAALPKSATGKIQKHLLRA 554
V P A L ++++ A+ + P+ V ALP++ +GK+QK LR
Sbjct: 384 VVVPAPGA-SLT----LAELTEHLAAQGLAKQKWPERLEVVDALPRTPSGKVQKFELRE 437
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 2e-75
Identities = 128/354 (36%), Positives = 172/354 (48%), Gaps = 25/354 (7%)
Query: 200 LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 259
+ YTSGTT PKGVV+SHR + A G+ EG V L LP+FH G A
Sbjct: 5 ILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLLGAL 64
Query: 260 LCGTSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 317
L G ++ L + I + VT P + +A+A A ED L+++ + +
Sbjct: 65 LAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKA-AEDRGYDLSSLRLLIS 123
Query: 318 AGAPPPPSLL-FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGV 376
G P P LL + G I YGLTE + V + P+ + T R GV
Sbjct: 124 GGEPLSPELLERFEERPGAPILEGYGLTETSV---VTSTNPDSELKKPGTVGR--PVPGV 178
Query: 377 RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN-PKANEEAFANGWFHSG 435
+ V+D P +GE+V+RG VMKGY N P+ A +GW+ +G
Sbjct: 179 E------VRVVDEEGK---PLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTG 229
Query: 436 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 495
DL + Y+ I R KD+I GGEN+ EVE VL HP V EAAVV PDE GE
Sbjct: 230 DLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERI 289
Query: 496 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 548
AFV L+P AD LAE++ R ++ Y VP+ + F LPK+A+GKI
Sbjct: 290 VAFVVLRPGADA-----LAEELKAHLRERLAPYKVPRVIEFVDELPKTASGKID 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 1e-73
Identities = 124/363 (34%), Positives = 177/363 (48%), Gaps = 34/363 (9%)
Query: 199 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258
A+ YTSGTT PKGV+++H + A + G+ V L LP+FH N +Y+ A
Sbjct: 85 AILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAYSVYAA 144
Query: 259 ALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA--SPEDTILPLTNVVNV 315
L G ++ L + +A + + HG T F + + SP+D PL V
Sbjct: 145 LLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRDHPLRFVF-- 202
Query: 316 NTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQ 374
GAP P ++ A ++ G ++ YG+TE V P D P + R R
Sbjct: 203 ---GAPLPAAIWPAFEERFGVKLVEGYGMTE----TGVPIIAPG-DPAPPGSCGR--PRP 252
Query: 375 GVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS---CVMKGYLKNPKANEEAFANGW 431
GV + ++D VP +GE+V+R + KGY P+A +A+ NGW
Sbjct: 253 GVE------VRIVDEDGR-EVPPG--EVGELVVRPRRPWAMFKGYYGMPEATAKAWRNGW 303
Query: 432 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 491
FH+GD + D ++ DR KD I GENISS EVE + HP V EAAVVA P E
Sbjct: 304 FHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELG 363
Query: 492 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALPKSATGKIQKH 550
+ A V L+P + LD E + +FCR ++P + VP+ + LPK+ T KIQK
Sbjct: 364 EDEVKAVVVLRP-GETLD----PEALLEFCRDRLPYFMVPRYIEFVDELPKTPTEKIQKA 418
Query: 551 LLR 553
LR
Sbjct: 419 ELR 421
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 1e-70
Identities = 152/564 (26%), Positives = 232/564 (41%), Gaps = 109/564 (19%)
Query: 21 TPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNV 80
P W RA L P R ++ + K T+ + + A L+ L + G V+++ N
Sbjct: 4 MPNWLKQRA-FLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNG 62
Query: 81 PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEA 140
M GAV +N RL+ + + L A +I D +F
Sbjct: 63 MEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDF------------- 109
Query: 141 NSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP--PEDEWQSI 198
++ G +++ + + E + DE +I
Sbjct: 110 --------EAKLIPGIS---------------VKFAELMNGPKEEAEIQEEFDLDEVATI 146
Query: 199 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258
YTSGTT PKGV+ ++ + ++ AL G+ E +L +P+FH
Sbjct: 147 M--YTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFH----------- 193
Query: 259 ALCGTSICLRQVT------------AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI 306
+ G SI +R V A+ + + T GVT +L + E T
Sbjct: 194 -ISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEGTY 252
Query: 307 LPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPAS-VCAWKPEWDSL--- 362
+ + G P P LL +KG + +YG+TE AS + PE D+L
Sbjct: 253 PS--SFRCMLLGGGPAPKPLLEQCKEKGIPVYQSYGMTE---TASQIVTLSPE-DALTKL 306
Query: 363 -----P-FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY 416
P F + ++ + VP GEIV++G V KGY
Sbjct: 307 GSAGKPLFPCELKI------------------EKDGVVVPP--FEEGEIVVKGPNVTKGY 346
Query: 417 LKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 476
L A E F +GWF +GD+ + ++ + DR D+IISGGENI E+E+VL HP
Sbjct: 347 LNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHP 406
Query: 477 LVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF 536
V EA VV PD++WG+ P AFV E E E++ FC K+ Y VPK F
Sbjct: 407 GVAEAGVVGVPDDKWGQVPVAFVVKSGEVTE-------EELRHFCEEKLAKYKVPKRFYF 459
Query: 537 A-ALPKSATGKIQKHLLRAKAKEM 559
LP++A+GK+ +H L+ +EM
Sbjct: 460 VEELPRNASGKLLRHELKQLVEEM 483
|
Length = 483 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 2e-69
Identities = 156/540 (28%), Positives = 229/540 (42%), Gaps = 51/540 (9%)
Query: 26 INRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYE 85
+ R A + P ++ + TW + R A ALS+ +G G V ++ N E
Sbjct: 23 LARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVE 82
Query: 86 AQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGK 145
+ A M GA+ +N RL +AF++S + VV+ + +A +
Sbjct: 83 SVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAV-----RDIVPL 137
Query: 146 LKTPHLIVIGDESCDSKQLEYALARGAIEYEKFL-ETGDPEFAWKPPEDEWQSIALGYTS 204
L T ++V G S D + YE L E G P D I YTS
Sbjct: 138 LST--VVVAGGSSDD----------SVLGYEDLLAEAGPAHAPVDIPNDSPALIM--YTS 183
Query: 205 GTTASPKGVVVSHRGAYLMSLNGALIWGMN-EGAVFLWTLPMFHGNGWSYTWSLAALCGT 263
GTT PKG V++H ++ G + V +P+FH G L
Sbjct: 184 GTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAP 243
Query: 264 SIC--LRQVTAKAVYTAIATHGVTHFCAAPVVLNAI---ANASPEDTILPLTNVVNVNTA 318
++ L + + VT P A+ A P D L ++
Sbjct: 244 TVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRDLALR-----VLSWG 298
Query: 319 GAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGV 376
AP +LL M+ +I +G TE++ P L E R G
Sbjct: 299 AAPASDTLLRQMAATFPEAQILAAFGQTEMS---------PVTCMLLGEDAIRKLGSVG- 348
Query: 377 RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGD 436
+ I V+D N +GEIV R +M GY NP+A EAFA GWFHSGD
Sbjct: 349 KVIPTVAARVVDENMNDVPVG---EVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGD 405
Query: 437 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC 496
L + + Y+ + DR KD+IISGGENI EVE VL HP ++E AV+ R DE+WGE P
Sbjct: 406 LVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPV 465
Query: 497 AFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALPKSATGKIQKHLLRAK 555
A ++ + L ED+++F ++ Y PK++ + ALP++ GK+ K LR +
Sbjct: 466 AVAAVRNDDAALT----LEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRER 521
|
Length = 542 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 227 bits (579), Expect = 1e-67
Identities = 148/539 (27%), Positives = 233/539 (43%), Gaps = 51/539 (9%)
Query: 24 WFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASAL-SKLSIGLGTTVSVIAPNVPA 82
++I + A LHP R +++ + T+ Q + + A+ L +L++ G +++++ N
Sbjct: 6 YWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLE 65
Query: 83 MYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANS 142
F + +NIRL + F L + + V+ V++ F ++A
Sbjct: 66 YIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSM-------- 117
Query: 143 EGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY 202
+ +I I E D + ++E S + Y
Sbjct: 118 QKVSYVQRVISITSLK---------------------EIEDRKIDNFVEKNESASFIICY 156
Query: 203 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALC 261
TSGTT PKG V++ + +LN + + LP+FH G + +
Sbjct: 157 TSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAG 216
Query: 262 GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAP 321
G I R+ + I H VT P + A+ N S +T L +V GAP
Sbjct: 217 GVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETT-NLQSVRWFYNGGAP 275
Query: 322 PPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICL 381
P L+ +GF +G+TE T P + E AR + +
Sbjct: 276 CPEELMREFIDRGFLFGQGFGMTE-TSPTVF---------MLSEEDARRKVGSIGKPVLF 325
Query: 382 DGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKH 441
++ID N+ V +GE+++RG VMK Y P A EE +GW +GDLA
Sbjct: 326 CDYELIDENKNK-VEVGE--VGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVD 382
Query: 442 PDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTL 501
D ++ I R K++IISGGENI +EVE+V+ V E AVV R +WGE P AF+
Sbjct: 383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVK 442
Query: 502 KPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLRAKAKEM 559
K + ++ +DV + CR + Y +PK +VF LPK+ATGKIQK L + K
Sbjct: 443 KSSSVLIE-----KDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKSR 496
|
Length = 496 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 1e-66
Identities = 176/566 (31%), Positives = 249/566 (43%), Gaps = 87/566 (15%)
Query: 18 TALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIA 77
TA+T + R T P R +T+ + R A L++L +G G VS
Sbjct: 41 TAVTAV----RLGTGAPRR---------FTYRELAALVDRVAVGLARLGVGRGDVVSCQL 87
Query: 78 PN---VPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEA 134
PN +Y A GAVLN + ++F+L HA S V++V + F A
Sbjct: 88 PNWWEFTVLYLA---CSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAA 144
Query: 135 LKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP---- 190
M H++V+G + GA +E L T P + +P
Sbjct: 145 --MARRLRPELPALRHVVVVGGD-------------GADSFEALLIT--PAWEQEPDAPA 187
Query: 191 --------PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWT 242
P+D Q I YTSGTT PKGV+ + + A G+ V L
Sbjct: 188 ILARLRPGPDDVTQLI---YTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMA 244
Query: 243 LPMFHGNGWSYTWSLAALCGTSICLRQV--TAKAVYTAIATHGVTHFCAAPVVLNAIANA 300
PM H G+ Y + + G + L+ + A+A I T GVT A+ L + A
Sbjct: 245 SPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAA-ELIRTEGVTFTMASTPFLTDLTRA 303
Query: 301 SPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTE-----LTGPASVCA 354
+++ P++++ AGAP P +L+ G +I +G+TE LT
Sbjct: 304 -VKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDP-- 360
Query: 355 WKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK 414
D T GV + V+DA P+PA IG + +RG
Sbjct: 361 -----DERASTTDGC--PLPGVE------VRVVDA-DGAPLPAG--QIGRLQVRGCSNFG 404
Query: 415 GYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 474
GYLK P+ N A+GWF +GDLA D YI I R KDVII GGENI VE+E +LY
Sbjct: 405 GYLKRPQLNGTD-ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYR 463
Query: 475 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK--MPSYWVPK 532
HP + + A+VA PDER GE CAFV +P LD E++ +F +A+ Y +
Sbjct: 464 HPAIAQVAIVAYPDERLGERACAFVVPRPGQ-SLDF----EEMVEFLKAQKVAKQYIPER 518
Query: 533 SVVFAALPKSATGKIQKHLLRAKAKE 558
VV ALP++ +GKIQK LR +
Sbjct: 519 LVVRDALPRTPSGKIQKFRLREMLRG 544
|
Length = 547 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 5e-65
Identities = 118/363 (32%), Positives = 174/363 (47%), Gaps = 36/363 (9%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAAL- 260
+TSGTT PKGV ++H+ + N A + L +P+FH +G + LA L
Sbjct: 9 HTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIVS-LLATLL 67
Query: 261 -CGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAG 319
G+ +C + +A + IA + VT + A P + + + + P + + +A
Sbjct: 68 AGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPPPRLRFIRSAS 127
Query: 320 APPPPSLLFAMSQKGFR--ITHTYGLTELTGPASVCAWKPEWDS-----LPFETQARLNA 372
AP PP++L + +K F + YG+TE + P P + +
Sbjct: 128 APLPPAVLDRL-EKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPAGVEVAILD 186
Query: 373 RQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF 432
G +P+P GEIV+RG V GYL NP+AN EAF +GWF
Sbjct: 187 DDG-----------------RPLPPG--QEGEIVIRGPNVTAGYLNNPEANREAFRDGWF 227
Query: 433 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 492
+GDL D Y+ + R+K++I GGE IS EVE+VL HP V EA V PDE +G
Sbjct: 228 RTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYG 287
Query: 493 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHL 551
E A V L+ D E++ F R ++ ++ VPK ++F ALPK ATGKIQ+
Sbjct: 288 EEVAAAVVLRA-----DSKVTIEELRDFARKRLAAFKVPKKILFVDALPKGATGKIQRRK 342
Query: 552 LRA 554
L
Sbjct: 343 LAE 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 1e-64
Identities = 123/366 (33%), Positives = 171/366 (46%), Gaps = 38/366 (10%)
Query: 194 EWQSIALG-YTSGTTASPKGVVVSHRGAYLMSLNGALIW-GMNEGAVFLWTLPMFHGNGW 251
+ A +TSG+T PK VV + G +L S G+ G+ +L +LP+FH +G
Sbjct: 75 DLDRPATIIFTSGSTGKPKAVVHT-WGNHLASARGSAENLGLTPDDNWLLSLPLFHVSGL 133
Query: 252 SYTWSLAALCGTSICLRQ-VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 310
+ + L G ++ L A+A+ A+ HGVTH P L + + L+
Sbjct: 134 AIVMR-SLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLESLGAR---WLS 189
Query: 311 NVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPAS-VCAWKPEWDSLPFETQAR 369
++ V GAP PPSLL Q+G + TYG+TE AS V KP+
Sbjct: 190 SLRAVLLGGAPIPPSLLEQARQRGIPLYPTYGMTET---ASQVATLKPD---------DF 237
Query: 370 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN 429
L V L G ++ R P GEI++RG + GYL +
Sbjct: 238 LAKLGSVGKP-LPGREL---RIVNP------QDGEILVRGPSLFLGYLPQGGLTPPLDED 287
Query: 430 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489
GWFH+GDL + Y+ + R D+IISGGENI E+E VL HP V EAAVV PD+
Sbjct: 288 GWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDD 347
Query: 490 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQ 548
WG+ P AFV P D + +L F K+ Y PK LP++A+GKI
Sbjct: 348 EWGQRPVAFV--VPNDDPVSVEELQA----FLADKLAKYKRPKRWYPLPELPRNASGKID 401
Query: 549 KHLLRA 554
+ LR
Sbjct: 402 RAALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 216 bits (553), Expect = 1e-63
Identities = 140/518 (27%), Positives = 225/518 (43%), Gaps = 53/518 (10%)
Query: 44 KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR 103
+ T+ + R RR A+ L+ G V +++PN AGAV+ + N
Sbjct: 31 RALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPL 90
Query: 104 LNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ 163
+A + S A + + +E A K+ E ++++ S
Sbjct: 91 YTPAEIAKQVK-DSGAKLA-----ITTSELAEKLASLALEP------VVLLDSADDGSA- 137
Query: 164 LEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLM 223
AI+ F + +P +D AL Y+SGTT KGV+++HR
Sbjct: 138 --------AIDDLLFADEPEPPVVVIKQDD---VAALPYSSGTTGRSKGVMLTHRNLIAN 186
Query: 224 SLNGALIWGMNEGA--VFLWTLPMFHGNGWS-YTWSLAALCGTSICLRQVTAKAVYTAIA 280
G N V L LPMFH G + +L L T + + + + AI
Sbjct: 187 VAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIE 246
Query: 281 THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRIT 338
+ VTH P ++ A+ D L+++ + + AP L A + G +
Sbjct: 247 KYKVTHLPVVPPIVLALVKHPIVDK-YDLSSLKQIGSGAAPLGKELAEAFRARFPGVELG 305
Query: 339 HTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDV--IDARTNQPVP 396
YG+TE + ++C E + + V + + ++ +D T + +P
Sbjct: 306 QGYGMTESSPVTTMC--------PVPEKDPKPGS---VGRL-VPNVEAKIVDPETGESLP 353
Query: 397 ADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDV 455
+ GE+ +RG VMKGYL NP+A E +GW H+GDL D Y+ I DRLK++
Sbjct: 354 P-NQP-GELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKEL 411
Query: 456 IISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAE 515
I G ++ E+E +L HP + +AAV+ PDE GE P AFV +P + EL +
Sbjct: 412 IKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVRQPGS-ELS----ED 466
Query: 516 DVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLL 552
+V +F ++ Y + VVF A+PKS +GKI + L
Sbjct: 467 EVMQFVAKQVAPYKKVRKVVFVDAIPKSPSGKILRREL 504
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 5e-63
Identities = 142/537 (26%), Positives = 216/537 (40%), Gaps = 71/537 (13%)
Query: 42 GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSIN 101
+ T+ R R A+AL L G V++ PN P A GA+ ++
Sbjct: 37 LFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVS 96
Query: 102 IRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDS 161
L+A VA ++ V+I D F K + + ++V+
Sbjct: 97 PGLSAEAVADRIADLGPKVLIADDGTF----RNGKEIALLEDADAVLSSVVVVP------ 146
Query: 162 KQLEYALARGAIEYEKFLETGDPEFAWKP--PEDEWQSIALGYTSGTTASPKGVVVSHRG 219
R + Y++ +E +F ++P +D + L YTSGTT PKG+V SH G
Sbjct: 147 --------RLGLWYDEAVEKASEKFEFEPLPADDP---LFLLYTSGTTGKPKGIVHSHGG 195
Query: 220 AYLMSLN--GALIWGMNEGAVFLWTLPMFH--GNGWSYTWSLAALCGTSICL----RQVT 271
YL+ + G F + G +S LA G + L +
Sbjct: 196 -YLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLA--SGATTVLYDGRPFYS 252
Query: 272 AKAVYTAIATHGVTHFCAAPVVLNAIANA-SPEDTILP-LTNVVNVNTAGAP-PPPSLLF 328
+ ++ A+ + VT F +P L + E L L + +AG P P + +
Sbjct: 253 PERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLG---SAGEPLNPEAFEW 309
Query: 329 AMSQKGFRITHTYGLTELTGP--ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDV 386
S G I YG TE A K LP G +
Sbjct: 310 FYSALGVWILDIYGQTETGMGFIAGRPPVKNGSSGLPLP---------GYA------VRR 354
Query: 387 IDARTNQPVPADGKTIGEIVMRGS--CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDN 444
+D N PVP GE+V+R + Y +P+ +EA+ W+ +GD A + D
Sbjct: 355 VDDEGN-PVPPGV---GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDG 410
Query: 445 YIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKP- 503
Y + R DVI G+ I +E+E VL HP V EAAVV PD G+ AFV L
Sbjct: 411 YFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAG 470
Query: 504 -EADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKE 558
E +E LAE++ + + + +P+ + F LPK+A+GKIQ+ LLR +
Sbjct: 471 VEPNE-----LAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHK 522
|
Length = 528 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 1e-61
Identities = 158/581 (27%), Positives = 255/581 (43%), Gaps = 91/581 (15%)
Query: 21 TPLWFI-NRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASAL-SKLSIGLGTTVSVIAP 78
T L+ +A +P + ++V+ + ++ + R A L + + G V +
Sbjct: 10 TSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQ 69
Query: 79 NVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMM 138
N P A + A AV+ +N +A ++ + + V IV E K+
Sbjct: 70 NSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAP------KVA 123
Query: 139 EANSEGKLKTPHLIV------IGDESCDS--------KQLEYALARGAIEYEKFLETGDP 184
A +L+ H+IV + E + L+ G + +++ L G
Sbjct: 124 PAVGNLRLR--HVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLA 181
Query: 185 EFAWKPPEDEWQS--IA-LGYTSGTTASPKGVVVSHRGAYLMSLNGALIW-GMNEGAVFL 240
PP +A L YTSGTT PKG + +HR + + G+++W +V L
Sbjct: 182 -----PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTV-MANAVGSVLWSNSTPESVVL 235
Query: 241 WTLPMFHGNGWSYTWSLAALCGTSICL-----RQVTAKAVYTAIATHGVTHFCAAP-VVL 294
LP+FH G ++ + G ++ L R+ A+ I + VTH+ P +V+
Sbjct: 236 AVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARL----IERYRVTHWTNIPTMVV 291
Query: 295 NAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-----GFRITHTYGLTE---- 345
+ +A+ + L+++ + GA P A++++ G YGLTE
Sbjct: 292 DFLASPGLAE--RDLSSLRYIGGGGAAMPE----AVAERLKELTGLDYVEGYGLTETMAQ 345
Query: 346 -LTGPASVCAWKPEWDSLP-FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIG 403
+ P K + +P F AR VID T + +P G+ +G
Sbjct: 346 THSNPPD--RPKLQCLGIPTFGVDAR----------------VIDPETLEELP-PGE-VG 385
Query: 404 EIVMRGSCVMKGYLKNPKANEEAFA--NG--WFHSGDLAVKHPDNYIEIKDRLKDVIISG 459
EIV+ G V KGY P+A EAF +G +F +GDL + Y I DRLK +I +
Sbjct: 386 EIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINAS 445
Query: 460 GENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL-AEDVS 518
G + EVE +LY HP + EA V+A PD R GE+ A V L+PEA +GK E++
Sbjct: 446 GFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEA----RGKTTEEEII 501
Query: 519 KFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKE 558
+ R M +Y P+ V F +LPKS +GKI L+ + K
Sbjct: 502 AWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKA 542
|
Length = 546 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 4e-61
Identities = 166/537 (30%), Positives = 255/537 (47%), Gaps = 55/537 (10%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMY 84
I A P R ++VY + ++ + ++R + A L IG G V+++ N A
Sbjct: 7 SIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFL 66
Query: 85 EAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEG 144
E F A GAV IN RL A VA+IL A + +++VD+EF +A
Sbjct: 67 ELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEF-----------DAIV-- 113
Query: 145 KLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTS 204
L+TP +++ DS++L A+G +E P A P D + L YTS
Sbjct: 114 ALETPKIVIDAAAQADSRRL----AQGGLEI--------PPQAAVAPTDLVR---LMYTS 158
Query: 205 GTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC-GT 263
GTT PKGV+ S+ + S++ + G+ L P++H + +A L G
Sbjct: 159 GTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLP-GIAVLWVGG 217
Query: 264 SICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPP 322
++ + R+ +AV AI H +T APV+L+ + P+ L ++ G
Sbjct: 218 TLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVL-TVPDRDRFDLDSLAWCIGGGEKT 276
Query: 323 PPSLLFAMSQ--KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTIC 380
P S + ++ R YGLTE ++ E + + +A + +
Sbjct: 277 PESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIA--- 333
Query: 381 LDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVK 440
DG R +P + K GEI MRG V KGY K+P+ EAF WF SGD+
Sbjct: 334 -DG----AGRW---LPPNMK--GEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYL 383
Query: 441 HPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVT 500
+ ++ + DR KD+IISGGENI+S EVE+V+Y P V EAAV+ D+RWGE A V
Sbjct: 384 DEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVV 443
Query: 501 LKPEAD-ELDKGKLAEDVSKFCRAKMPSYWVPKS-VVFAALPKSATGKIQKHLLRAK 555
L P A L+ + + CR ++ S+ VP+ V LP++ +GK+ K +LR +
Sbjct: 444 LNPGATLTLEA------LDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDE 494
|
Length = 497 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 209 bits (533), Expect = 5e-61
Identities = 135/524 (25%), Positives = 210/524 (40%), Gaps = 60/524 (11%)
Query: 42 GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSIN 101
T+ ++ R A L KL + G V++I+PN G AG ++++ N
Sbjct: 7 TGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAAN 66
Query: 102 IRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKT-PHLIVIGDESCD 160
+A L + ++ D + +EA K +L +IV+
Sbjct: 67 PSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAK--------ELGPVVRIIVLDSAP-- 116
Query: 161 SKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQS----IALGYTSGTTASPKGVVVS 216
G + E LE P AL Y+SGTT PKGV++S
Sbjct: 117 ---------DGVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLS 167
Query: 217 HRG---AYLMSLNGALIWGMNEGAVFLWTLPMFHGNG-WSYTWSLAALCG-TSICLRQVT 271
H+ + + V L LP +H G + SL LCG T I + +
Sbjct: 168 HKNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASL--LCGATVIIMPKFD 225
Query: 272 AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSL---LF 328
++ I + VT P + A+A SP L+++ + + AP L L
Sbjct: 226 SETFLKLIEKYKVTSLFLVPPIAVALAK-SPLVDKYDLSSLRVIFSGAAPLSKELQEELR 284
Query: 329 AMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVID 388
I YG+TE ++ + RL + ++D
Sbjct: 285 KRFPNTT-IKQGYGMTETGPATTLT----PPGDEKPGSVGRLVPNVEAK--------IVD 331
Query: 389 ARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIE 447
+ + + + GE+ ++G +MKGYL NP+A +E +GW H+GD+ D
Sbjct: 332 EDGGKSLGPNER--GELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDEDGNFY 389
Query: 448 IKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE 507
I DR K++I G + E+E VL HP V +AAV+ PDE GE P A+V LKP
Sbjct: 390 IVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVLKP---- 445
Query: 508 LDKGKL-AEDVSKFCRAKMPSY-WVPKSVVFA-ALPKSATGKIQ 548
KL ++V + K+ Y + VVF +PKS +GKI
Sbjct: 446 --GSKLTEQEVKDYVAKKVAKYKQLRGGVVFVDEIPKSPSGKIL 487
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 6e-61
Identities = 141/530 (26%), Positives = 218/530 (41%), Gaps = 62/530 (11%)
Query: 39 VVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98
+ Y T+ + R+ +AL +L I V +I + P A +GA GAV
Sbjct: 24 LYYDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPV 83
Query: 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDES 158
IN L + L+ + + V+++ +E + + + AL+ L+ H+IV+G
Sbjct: 84 PINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDP-----HLR--HVIVVGGAG 136
Query: 159 CDSKQLEYALARGAIEYEKFLETG--DPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVS 216
+ L A E + T D F W Y+SG+T PKGVV
Sbjct: 137 PGALSYA-QLIATAAEELEAAATSADDMAF--------WL-----YSSGSTGRPKGVVHL 182
Query: 217 HRGAYLMS-LNGALIWGMNEGAVFLWTLPMFH----GNGWSYTWSLAALCGTSICL-RQV 270
H + + + G+ E V +F GNG + S+ A T++ + +
Sbjct: 183 HHDMLVTAEAYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFPLSVGA---TTVLMPERP 239
Query: 271 TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAM 330
T AV+ I + T F P + A+ A+PE L+++ +AG P +
Sbjct: 240 TPDAVFATIERYKPTVFFGVPTLYAAML-AAPEKPERDLSSLRLCVSAGEALPAEI---- 294
Query: 331 SQKGFRITHTYGLTELTGPASV------CAWKPEWDSLPFETQARLNARQGVRTICLDGL 384
G+R +GL L G S + +P ++ + T + V+ + DG
Sbjct: 295 ---GYRWKELFGLEILDGIGSTEMLHIFLSNRP--GAVKYGTSGKPVPGYEVKLVDEDGE 349
Query: 385 DVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDN 444
+V D IGE+ +RG GY + E F W +GD + D
Sbjct: 350 EVADG-----------EIGELWVRGDSSAAGYWNRREKTRETFVGEWTRTGDKYYRDEDG 398
Query: 445 YIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPE 504
Y R D++ G +S EVE L HP VLEAAVV DE P AFV LK
Sbjct: 399 YYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKAFVVLKDG 458
Query: 505 ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLR 553
+L ++ F + K+ Y P+ + F LPK+ATGKIQ+ LR
Sbjct: 459 YQ--PSPELETELKDFVKDKLAPYKYPRWIEFVDELPKTATGKIQRFKLR 506
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 5e-60
Identities = 123/371 (33%), Positives = 175/371 (47%), Gaps = 45/371 (12%)
Query: 199 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258
+ YTSGTT PKG + +HR + A G+ +V L LP+FH G + +
Sbjct: 88 VIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQGSMNAP 147
Query: 259 ALCG-TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 317
G T + L + +A AI + VTH+ ++ + P L+++ V
Sbjct: 148 IYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLA-HPRFADYDLSSLKVVGG 206
Query: 318 AGAPPPPSL---LFAMSQKGFRITHTYGLTE------LTGPASVCAWKPEWDSLP-FETQ 367
GA PP++ L A++ G YGLTE P KP+ +P F T
Sbjct: 207 GGAALPPAVAERLKALT--GLLYEEGYGLTETHTCTHFNPPDRP---KPQCLGIPVFGTD 261
Query: 368 ARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 427
AR VID T + +P G GEIV+RG V KGY P+A E+F
Sbjct: 262 AR----------------VIDPETGEELP-PG-EEGEIVVRGPQVFKGYWNRPEATAESF 303
Query: 428 ----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483
+F +GDL + Y DR+K +I G + EVE +LY HP VLE V
Sbjct: 304 IELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCV 363
Query: 484 VARPDERWGESPCAFVTLKPEADELDKGKL-AEDVSKFCRAKMPSYWVPKSVVF-AALPK 541
+ RPD R GE AFV LKP+ +GK+ ED+ ++CR +M +Y P+ + F LPK
Sbjct: 364 IGRPDPRRGEVVKAFVVLKPDY----RGKVTEEDIIEWCRERMAAYKYPRIIEFVDELPK 419
Query: 542 SATGKIQKHLL 552
+A+GK+ LL
Sbjct: 420 TASGKVLWRLL 430
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 3e-59
Identities = 153/539 (28%), Positives = 226/539 (41%), Gaps = 55/539 (10%)
Query: 28 RAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQ 87
A +P R ++V G T+ Q R R+ A L +G G V++++ N P + A
Sbjct: 20 SALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAI 79
Query: 88 FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 147
A +AG +++ + A++L A + +IVD F E AL ++
Sbjct: 80 GAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPF--VERALALLA-------- 129
Query: 148 TPHLIVIGDESCDSKQLEYALARGAIEY-EKFLETGDPEFAWKPPEDEWQS---IALGYT 203
S L++ L G + L F P L YT
Sbjct: 130 ----------RVPS--LKHVLTLGPVPDGVDLLAAAAK-FGPAPLVAAALPPDIAGLAYT 176
Query: 204 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGT 263
GTT PKGV+ +HR M+ W FL P+ H G + +L GT
Sbjct: 177 GGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAFFLPTLL-RGGT 235
Query: 264 SICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTA--GAP 321
I L + V AI +T P ++ A+ + T ++ ++ T GA
Sbjct: 236 VIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRT----RDLSSLETVYYGAS 291
Query: 322 P--PPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLP--FETQARLNARQGVR 377
P P L A+ + G YG TE + + P + R G+R
Sbjct: 292 PMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTP--GLR 349
Query: 378 TICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDL 437
LD + V +GEI +RG VM GY P+ EAF +GW H+GD+
Sbjct: 350 VALLDEDG-------REVAQG--EVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDV 400
Query: 438 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497
A + D + I DR KD+I++GG N+ EVE VL HP V + AV+ PDE+WGE+ A
Sbjct: 401 AREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTA 460
Query: 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAK 555
V L+P A +D A ++ + + S PK V F +LP +A GK K LRA+
Sbjct: 461 VVVLRPGAA-VD----AAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRAR 514
|
Length = 524 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 3e-55
Identities = 164/537 (30%), Positives = 230/537 (42%), Gaps = 78/537 (14%)
Query: 44 KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPN---VPAMYEAQFGAPMAGAVLNSI 100
+ +++ + R R A L++L +G G VS PN A+Y A GAVLN +
Sbjct: 52 RRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLA---CARIGAVLNPL 108
Query: 101 NIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHL--IVIGDES 158
++F+L+HA S V +V F A M + KL P L +V+ D
Sbjct: 109 MPIFRERELSFMLNHADSKVFVVPSVFRGFDHAA---MARELQSKL--PALRQVVVID-- 161
Query: 159 CDSKQLEYALARGAIEYEKFLETGD----PEFAWK------PPEDEWQSIALGYTSGTTA 208
G +++ L T + P+ A P+D Q I YTSGTT
Sbjct: 162 ----------GDGDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLI---YTSGTTG 208
Query: 209 SPKGVVVSHRGAYLMSLNGALIWGM--NEGAVFLWTLPMFHGNGWSYTWSLAALCGTSIC 266
PKGV+ H L S + G V L PM H G+ Y + + +
Sbjct: 209 EPKGVM--HTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAV 266
Query: 267 LRQV--TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPP 324
L+ + A+A I GVT A+ L + A E P+ ++ AGAP P
Sbjct: 267 LQDIWNPARAA-ELIRETGVTFTMASTPFLTDLCRAVKESG-APVPSLFTFLCAGAPIPG 324
Query: 325 SLL-FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTIC-LD 382
L+ A G I +G+TE +V +P + L
Sbjct: 325 ILVERAWELLGALIVSAWGMTE---NGAVTVTEP----------DDALEKASTTDGRPLP 371
Query: 383 GLDVIDARTNQPVPADGKT-----IGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDL 437
G++V + + A+G G +++RG GYLK P N A GWF +GDL
Sbjct: 372 GVEV------KVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNSTD-AEGWFDTGDL 424
Query: 438 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497
A + + YI I R KDVII GGENI VE+E +LY HP V + A+VA PDER GE CA
Sbjct: 425 AFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACA 484
Query: 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKS-VVFAALPKSATGKIQKHLLR 553
V KP LD + + K+ ++P+ V ALP + GKIQK LR
Sbjct: 485 VVVPKPGCT-LDFAAMVAFLK---AQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 1e-54
Identities = 105/373 (28%), Positives = 160/373 (42%), Gaps = 38/373 (10%)
Query: 193 DEWQSIAL-GYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 251
+E +AL + GTT PK + +H + A G++ G V+L LP H
Sbjct: 136 EELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTL 195
Query: 252 SYTWSLAAL--CGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPL 309
S L AL GT + + + I VTH P +LN A+ D L
Sbjct: 196 SSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQ-ADL 254
Query: 310 TNVVNVNTAGAPPPPSLLFAMSQKGF--RITHTYGLTE----LTGPASVCAWKPEWDSLP 363
+++ + GAP P L ++ + +G+ E T +
Sbjct: 255 SSLRVIQVGGAPLSPEL-ARRVEERLGCPLQQVFGMAEGLVNYTRLDDP-------PDVI 306
Query: 364 FETQARLNARQGVRTIC-LDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA 422
TQ R I D + ++D + PVP G +GE++ RG ++GY + P+
Sbjct: 307 MRTQGR--------PISPADEIRIVDDQGE-PVP-PG-EVGELLTRGPYTIRGYYRAPEH 355
Query: 423 NEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEA 481
N AF +G++ +GDL D Y + R+KD I GGE IS E+E +L HP V +A
Sbjct: 356 NARAFTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADA 415
Query: 482 AVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSV-VFAAL 539
AVV PDE GE CAFV + ++ F R + + + +P + V +L
Sbjct: 416 AVVGMPDEVLGERICAFVVPRGG-AAPT----LAELRAFLREQGLAKFKLPDRLEVVDSL 470
Query: 540 PKSATGKIQKHLL 552
P + GK+ K L
Sbjct: 471 PLTPVGKVDKKAL 483
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 1e-54
Identities = 159/578 (27%), Positives = 230/578 (39%), Gaps = 96/578 (16%)
Query: 27 NRAATLHPTRKSVVYG--SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMY 84
+ P R+++V + YTW Q R A L L + G V + APN
Sbjct: 25 DATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWL 84
Query: 85 EAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFS-----LAEEALKMME 139
QF GA+L +IN A+ + + L + VI F + + +E L +
Sbjct: 85 LTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLA 144
Query: 140 ANSEGKL---KTPHL--IVIGDESCDSKQLEYA--LARGAI-------EYEKFLETGDPE 185
G L + P L +V + L + ARG E + L+ DP
Sbjct: 145 EGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDP- 203
Query: 186 FAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI----WGMNEGAVFLW 241
I + YTSGTT PKG +SH LN G+ E
Sbjct: 204 ------------INIQYTSGTTGFPKGATLSHHNI----LNNGYFVAESLGLTEHDRLCV 247
Query: 242 TLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYT--AIATHGVTHFCAAPVVLNAIAN 299
+P++H G G + + T A+ T P + IA
Sbjct: 248 PVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF--IAE 305
Query: 300 AS-PEDTILPLTNVVNVNTAGAPPPPSLL------FAMSQKGFRITHTYGLTE------L 346
P+ L+++ AGAP P ++ M++ + YG+TE
Sbjct: 306 LDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAE----VQIAYGMTETSPVSLQ 361
Query: 347 TGPASVCAWKPEWDSLP--FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGE 404
T A D L ET R V+ + DG VP IGE
Sbjct: 362 TTAA---------DDLERRVETVGRTQPHLEVKVVDPDG---------ATVPRG--EIGE 401
Query: 405 IVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENI 463
+ RG VMKGY NP+A E+ +GW H+GDLA Y+ I R KD+II GGENI
Sbjct: 402 LCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENI 461
Query: 464 SSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKP--EADELDKGKLAEDVSKFC 521
E+E+ L+ HP V + V PDE++GE A+V L P A E E++ +FC
Sbjct: 462 YPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASE-------EELREFC 514
Query: 522 RAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKE 558
+A++ + VP+ F P + TGK+QK +R + E
Sbjct: 515 KARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIE 552
|
Length = 558 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 2e-54
Identities = 159/559 (28%), Positives = 245/559 (43%), Gaps = 61/559 (10%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMY 84
F+ +AA P R ++V+G + +TW + R A+AL+ + G + V + N M+
Sbjct: 12 FLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMF 71
Query: 85 EAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEG 144
E+ F A GAV N R VA+ L+ AS A ++ F E A A
Sbjct: 72 ESMFAAFRLGAVWVPTNFRQTPDEVAY-LAEASGARAMICHADF--PEHA----AAVRAA 124
Query: 145 KLKTPHLIVIGDESCDSKQLEYALAR--GAIEYEKFLETGDPEFAWKPPEDEWQSIALGY 202
H++ IG + E +AR GA ++ DP W +
Sbjct: 125 SPDLTHVVAIG-GARAGLDYEALVARHLGARVANAAVDHDDP--CW-----------FFF 170
Query: 203 TSGTTASPKGVVVSH-RGAYLMSLNGA-LIWGMNEGAVFLWTLPMFHGNGWSYTWSLAAL 260
TSGTT PK V++H + A++++ + A L+ G E L P+ HG G +A
Sbjct: 171 TSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLCQVAR- 229
Query: 261 CGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTA 318
++ L + V+ + H VT+ P +L + P +++ V A
Sbjct: 230 GAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVE-HPAVDRYDHSSLRYVIYA 288
Query: 319 GAPPPPSLLFAMSQK------GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN- 371
GAP ++ QK G + +GL E+TG +V P AR+
Sbjct: 289 GAP-----MYRADQKRALAKLGKVLVQYFGLGEVTGNITVLP--PALHDAEDGPDARIGT 341
Query: 372 ---ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 428
R G+ + + D +P G+T GEI + G V GY NP+AN +AF
Sbjct: 342 CGFERTGME------VQIQDDEGR-ELPP-GET-GEICVIGPAVFAGYYNNPEANAKAFR 392
Query: 429 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488
+GWF +GDL ++ I R D+ ISGG N+ E+E+ L HP V E AV+ PD
Sbjct: 393 DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPD 452
Query: 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKI 547
WGE A + A +D+ +L + K+ Y +PK F ALPKS GKI
Sbjct: 453 PVWGEVGVAVCVARDGAP-VDEAELLA----WLDGKVARYKLPKRFFFWDALPKSGYGKI 507
Query: 548 QKHLLRAKAKEMGPVKMIK 566
K ++R + +E G + + +
Sbjct: 508 TKKMVREELEERGLLDLER 526
|
Length = 528 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 6e-54
Identities = 127/505 (25%), Positives = 198/505 (39%), Gaps = 74/505 (14%)
Query: 47 TWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNA 106
TW A AL I G+ V+++ N M + GA + +N RL
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 107 TVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEY 166
L +++ D K +A+S +++
Sbjct: 61 NERTNQLEDLDVQLLLTDSLL------EEKDFQADSLDRIEAA----------------- 97
Query: 167 ALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLN 226
R L +TSGTT PK V + R Y ++
Sbjct: 98 --GRYETSLSASFNMDQI-------------ATLMFTSGTTGKPKAVPHTFRNHYASAVG 142
Query: 227 GALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKA-VYTAIATHGVT 285
G E +L +LP++H +G S + + G + LR V + IA VT
Sbjct: 143 SKENLGFTEDDNWLLSLPLYHISGLSILFR-WLIEGAT--LRIVDKFNQLLEMIANERVT 199
Query: 286 HFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTE 345
H P LN + + N+ + G+ P L+ Q G I +YG+TE
Sbjct: 200 HISLVPTQLNRLLDEG-----GHNENLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTE 254
Query: 346 LTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEI 405
+ V PE L+AR V L G ++ + + + GEI
Sbjct: 255 TC--SQVTTATPEM----------LHARPDVGRP-LAGREI---KIKVD---NKEGHGEI 295
Query: 406 VMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISS 465
+++G+ +MKGYL + GWF++GD+ + ++ + R D+IISGGENI
Sbjct: 296 MVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYP 355
Query: 466 VEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKM 525
E+E VLY HP + EA VV +PD WG+ P A++ E+D + KL + K+
Sbjct: 356 EEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVS--ESDI-SQAKL----IAYLTEKL 408
Query: 526 PSYWVPKSVVFA-ALPKSATGKIQK 549
Y VP + LP +A+GKI +
Sbjct: 409 AKYKVPIAFEKLDELPYNASGKILR 433
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 8e-54
Identities = 153/574 (26%), Positives = 220/574 (38%), Gaps = 77/574 (13%)
Query: 25 FINRAATLHPTRKSVVY--------GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVI 76
++RAA HP ++ + + +T+ + R A+ L L +G G V+ +
Sbjct: 30 LLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFL 89
Query: 77 APNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIV-----DQEFFSLA 131
PN+P + A +G AG N IN L +A +L A + V++ + +
Sbjct: 90 LPNLPETHFALWGGEAAGIA-NPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKV 148
Query: 132 EEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARG--AIEYEKFLET-----GDP 184
E L + L+T + + K+L L R F GD
Sbjct: 149 AEVLAALPE-----LRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDR 203
Query: 185 EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP 244
F+ +P + A +T GTT PK +H + GAL+ G+ G LP
Sbjct: 204 LFSGRPIGPD-DVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLP 262
Query: 245 MFHGNGWSYTWSLAALC-------GTSICLRQVTAKAVY----TAIATHGVTHFCAAPVV 293
+FH N LA L T R V + + + P V
Sbjct: 263 LFHVNA-LLVTGLAPLARGAHVVLATPQGYR---GPGVIANFWKIVERYRINFLSGVPTV 318
Query: 294 LNAIANASPEDTILPLTNVVNVNTA--GAPPPPSLLFA--MSQKGFRITHTYGLTELTGP 349
A+ + ++ ++ A GA P P +F + G RI YGLTE T
Sbjct: 319 YAALLQVPVDG-----HDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATC- 372
Query: 350 ASVCAW-----KPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGE 404
S + L Q VR + LD R + D +G
Sbjct: 373 VSSVNPPDGERRIGSVGLRLPYQR-------VRVVILDD----AGRYLRDCAVDE--VGV 419
Query: 405 IVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENIS 464
+ + G V GYL+ +GW ++GDL D Y + R KD+II GG NI
Sbjct: 420 LCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNID 479
Query: 465 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK 524
+E+ L HP V AA V RPD GE P A+V LKP A + +L F R
Sbjct: 480 PAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGAS-ATEAELLA----FARDH 534
Query: 525 MPS-YWVPKSVVF-AALPKSATGKIQKHLLRAKA 556
+ VPK V ALPK+A GKI K LR A
Sbjct: 535 IAERAAVPKHVRILDALPKTAVGKIFKPALRRDA 568
|
Length = 632 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 4e-53
Identities = 153/542 (28%), Positives = 230/542 (42%), Gaps = 65/542 (11%)
Query: 50 QTYR----RCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 105
TY + RR A+ L L + G V+++ PN P A + GAV+ N
Sbjct: 58 TTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYT 117
Query: 106 ATVVAFILSHASSAVVIVDQEFFSLAEE-----------ALKMMEANSEGK---LKTPHL 151
A + + V IV + E ++ M+ A + L+ P
Sbjct: 118 AHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLP-- 175
Query: 152 IVIGDESCDSKQLEYALARGAIEYEKFLET--GDPEFAWKPPEDEWQSIAL-GYTSGTTA 208
I ++ L A G + +E ++ G P +AL YTSGTT
Sbjct: 176 IPALRKARA--ALT-GPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTG 232
Query: 209 SPKGVVVSHRGAYLMSLNG-ALIWGMNEGA-VFLWTLPMFHGNGWSYTWSLAALCGTSIC 266
PKG ++HR + + G A + G+ +G L LPMFH G + +LA G +
Sbjct: 233 KPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELV 292
Query: 267 L-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN-VNTAGAPPPP 324
L + A+ H T P + IA A+ E + L+ V N + A A P
Sbjct: 293 LLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGV-DLSGVRNAFSGAMALPVS 351
Query: 325 SLLFAMSQKGFRITHTYGLTELTGPASVC-----AWKPEWDSLPF-ETQARLNARQGVRT 378
++ G + YGLTE T P V +P + +PF +T+ R
Sbjct: 352 TVELWEKLTGGLLVEGYGLTE-TSPIIVGNPMSDDRRPGYVGVPFPDTEVR--------- 401
Query: 379 ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLA 438
++D DG+ GE+++RG V KGY P+ ++F +GWF +GD+
Sbjct: 402 -------IVDPEDPDETMPDGEE-GELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVV 453
Query: 439 VKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF 498
V D +I I DR+K++II+GG N+ EVE+VL HP V +AAVV P E E A
Sbjct: 454 VMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAA 513
Query: 499 VTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKS-VVFAALPKSATGKIQKHLLRAKAK 557
V L+P A LD E + +CR + Y VP+ LP+ GK+ R + +
Sbjct: 514 VVLEPGAA-LD----PEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKV----RRREVR 564
Query: 558 EM 559
E
Sbjct: 565 EE 566
|
Length = 573 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 4e-50
Identities = 152/534 (28%), Positives = 229/534 (42%), Gaps = 60/534 (11%)
Query: 54 RCRRFASAL-SKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFI 112
R A AL +L I V + N E F GAV N +N +L + I
Sbjct: 47 RAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHI 106
Query: 113 LSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGA 172
++HA V++ D LAE+ ++++ ++ IG DS
Sbjct: 107 INHAEDEVIVADPR---LAEQLGEILKECP----CVRAVVFIGPSDADSAAAHMPEGIKV 159
Query: 173 IEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYL--MSLNGALI 230
YE L+ + W P DE + A+ Y++GTT +PKGVV SHR YL +SL
Sbjct: 160 YSYEALLDGRSTVYDW-PELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDS 218
Query: 231 WGMNEGAVFLWTLPMFHGNGWSYTWSLAA-LCGTSICL--RQVTAKAVYTAIAT------ 281
+ G FL +P++H W LAA + GT + ++A + IAT
Sbjct: 219 LAVTHGESFLCCVPIYHVLSWGV--PLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVA 276
Query: 282 HGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHT 340
HGV +V PE L + G+ PP L+ A ++ G + H
Sbjct: 277 HGVPTLWIQLMV--HYLKNPPERMSLQ-----EIYVGGSAVPPILIKAWEERYGVDVVHV 329
Query: 341 YGLTELTGPASVCAWKPEWDSLPFETQARLNAR--QGVRTICLDGLDVIDARTNQPVPAD 398
+G+TE T P A P S +AR R QG L+ V D + + +
Sbjct: 330 WGMTE-TSPVGTVARPPSGVS----GEARWAYRVSQGRFPASLEYRIVNDGQV---MEST 381
Query: 399 GKTIGEIVMRGSCVMKGYLKNP-----------------KANEEAFANGWFHSGDLAVKH 441
+ GEI +RG+ V Y +P AN+ A+GW +GD+
Sbjct: 382 DRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVT 441
Query: 442 PDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTL 501
D ++ I DR +DVI SGGE I S ++E + P V+E AV+ PD++WGE P A L
Sbjct: 442 RDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVL 501
Query: 502 KPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRA 554
P + + AE + R ++P++ +P+ F + K++ GK K LR
Sbjct: 502 APGIEP--TRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQ 553
|
Length = 576 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 1e-49
Identities = 143/542 (26%), Positives = 214/542 (39%), Gaps = 65/542 (11%)
Query: 28 RAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQ 87
R A +P R +V+G +T+ + R A AL+ + G V+++ N +
Sbjct: 29 RQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVF 88
Query: 88 FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 147
G GA+ IN L + IL ++ + +++V+ L +EA G L
Sbjct: 89 LGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAAL-------LAALEAADPGDLP 141
Query: 148 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTT 207
P + ++ + S + A P D + A+ YTSGTT
Sbjct: 142 LPAVWLLDAPASVSVPAGW----STAPLPPLDAPAPA--AAVQPGD---TAAILYTSGTT 192
Query: 208 ASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL 267
KGV H Y N A + V TLP+FH N + + A L G + L
Sbjct: 193 GPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALN-AFFQALLAGATYVL 251
Query: 268 -RQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN------ASPEDTILPLTNVVNVNTAGA 320
+ +A + A+ HG T +L A+ + A D + V V
Sbjct: 252 EPRFSASGFWPAVRRHGAT----VTYLLGAMVSILLSQPARESDR----AHRVRVALGPG 303
Query: 321 PPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTIC 380
P + G + YG TE +V + R G
Sbjct: 304 VPAALHAAFRERFGVDLLDGYGSTETNFVIAV---------------THGSQRPGSMGRL 348
Query: 381 LDGLDVIDART----NQPVPADGKTIGEIVMRGS---CVMKGYLKNPKANEEAFANGWFH 433
G +AR +Q +P GE+++R GY P+ EA+ N WFH
Sbjct: 349 APG---FEARVVDEHDQELPDG--EPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFH 403
Query: 434 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493
+GD V+ D + DR+KD I GENISS EVE+VL HP V AAV P E +
Sbjct: 404 TGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGED 463
Query: 494 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLL 552
A V L+ L+ + + C ++ + VP+ V F AALPK+ GK+QK +L
Sbjct: 464 EVMAAVVLRD-GTALE----PVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVL 518
Query: 553 RA 554
R
Sbjct: 519 RE 520
|
Length = 542 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 1e-49
Identities = 108/380 (28%), Positives = 162/380 (42%), Gaps = 60/380 (15%)
Query: 199 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWS 256
A+ YTSG+T PKGV++SHR L + ++ + E L LP G
Sbjct: 6 AIIYTSGSTGEPKGVMLSHRN--LTAGARSIAQYLELTEDDRILAVLPFSFDYG-LSQLL 62
Query: 257 LAALCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 314
A G ++ L R + V +A +T F P + P ++
Sbjct: 63 TAFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAR-EDFPSLRY 121
Query: 315 V-NTAGAPPPPSL-----------LFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL 362
+ N GA P ++ LF+M YGLTE A + L
Sbjct: 122 LTNAGGALPAKTILQLRRAFPDAKLFSM----------YGLTE----AFRSTY------L 161
Query: 363 PFETQARLNARQGVRTICLDG--LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP 420
P E L+ R + L V+D N+ P + +GE+V RG+ VMKGY +P
Sbjct: 162 PPE---ELDRRPDSIGKAIPNVELWVVDEDGNRCAPGE---VGELVHRGANVMKGYWNDP 215
Query: 421 KANEEAFA------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 474
+A E ++GDL + Y+ R D+I + G +S E+E+V+
Sbjct: 216 EATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICA 275
Query: 475 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV 534
HPLV EAAV+ PD G++ A V +K ++ K CR +P+Y VP +
Sbjct: 276 HPLVAEAAVIGVPDPLLGQAIVAVVVSADGESLDEK-----ELLKHCRKHLPNYMVPAEI 330
Query: 535 VF-AALPKSATGKIQKHLLR 553
VF +LPK+A GK+ + LR
Sbjct: 331 VFVDSLPKNANGKVDRSALR 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 2e-49
Identities = 92/238 (38%), Positives = 126/238 (52%), Gaps = 30/238 (12%)
Query: 337 ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA--RQGVRTI--CLDGLDV--IDAR 390
+T YG+TE T P S TQ R + + V T+ L L+V +D
Sbjct: 344 VTIAYGMTE-TSPVS--------------TQTRTDDPLEKRVTTVGRALPHLEVKIVDPE 388
Query: 391 TNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIK 449
T + VP GE+ RG VMKGY +P+ EA A+GW H+GDLAV + Y+ I
Sbjct: 389 TGETVPRG--EQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIV 446
Query: 450 DRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELD 509
R+KD+II GGENI E+E+ LY HP + + VV PDE++GE CA++ L+P A L
Sbjct: 447 GRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGA-TLT 505
Query: 510 KGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKEMGPVKMIK 566
EDV FCR K+ Y +P+ + F P + TGKIQK +R E ++ K
Sbjct: 506 ----EEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEELGLQAAK 559
|
Length = 559 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 3e-49
Identities = 118/380 (31%), Positives = 162/380 (42%), Gaps = 46/380 (12%)
Query: 199 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258
A +T GTT +PK SHR + AL+ G+ G V L LP+FH G + LA
Sbjct: 6 AYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGG-AIVTGLA 64
Query: 259 ALC-------GTSICLRQVTAKA-VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 310
L T R A + + + VT A P VL A+ D ++
Sbjct: 65 PLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGDA--DIS 122
Query: 311 NVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 369
++ T AP P + G + YG+TE TG +++
Sbjct: 123 SLRYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAI----------------- 165
Query: 370 LNARQGVRTICLDGLDV---------IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP 420
N R G R GL + +DA +G + +RG V GYL N
Sbjct: 166 -NPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYL-ND 223
Query: 421 KANEEA-FANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL 479
N A +GW ++GDL D Y+ + R KD+II GG NI +E+ L HP V
Sbjct: 224 AHNAGARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVA 283
Query: 480 EAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAA 538
AA V RPD GE P A+V LKP A + +G+L V + + VPK++ + A
Sbjct: 284 LAAAVGRPDAYAGELPVAYVQLKPGAT-VTEGELLAFVKA-RIPERAA--VPKAIYIIDA 339
Query: 539 LPKSATGKIQKHLLRAKAKE 558
LP +A GKI K LR A E
Sbjct: 340 LPLTAVGKIFKPRLRCDAAE 359
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 8e-49
Identities = 105/369 (28%), Positives = 149/369 (40%), Gaps = 42/369 (11%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWS---- 256
+TSGTT PK V+ +H + GA + + WT+ GW+ WS
Sbjct: 88 FTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLH-WTIA---DPGWAKGAWSSLFA 143
Query: 257 --LAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP-LTNVV 313
L R+ A+ + +GVT FCA P + L +VV
Sbjct: 144 PWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRMLLQQDLSSYDFSHLRHVV 203
Query: 314 NVNTAGAP-PPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 372
+AG P P + + + G I YG TE +
Sbjct: 204 ---SAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGME--------------V 246
Query: 373 RQGVRTICLDGLDV--IDARTNQPVPADGKTIGEIVMRGSC----VMKGYLKNPKANEEA 426
+ G G V ID N+ P + G+I +R + +GYLK+P+ E
Sbjct: 247 KPGSMGRPAPGYRVAIIDDEGNELPPGE---EGDIAVRVKPRPPGLFRGYLKDPEKTEAT 303
Query: 427 FANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 486
W+ +GD A+K D Y R DVI S G I EVE L HP V EAAVV
Sbjct: 304 IRGDWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGS 363
Query: 487 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATG 545
PD GE AFV L P +LA+++ + + + Y P+ + F LPK+ +G
Sbjct: 364 PDPVRGEVVKAFVVLAP--GYQPSEELAKELQEHVKKRTAPYKYPREIEFVEELPKTVSG 421
Query: 546 KIQKHLLRA 554
KI++ LRA
Sbjct: 422 KIRRVELRA 430
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 1e-48
Identities = 108/361 (29%), Positives = 157/361 (43%), Gaps = 32/361 (8%)
Query: 199 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258
+ YTSGTT PKGVV++H + W V L LP+ H +G
Sbjct: 92 LIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNALHCP 151
Query: 259 ALCGTS-ICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN--V 315
G S L + + +T F P + + E N +
Sbjct: 152 LWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLL-EHYEFDDAAAAAARNLRL 210
Query: 316 NTAG-APPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNAR 373
+G A P +L ++ G + YG+TE TG A S P + + R
Sbjct: 211 FVSGSAALPVPVLERWEERTGHTLLERYGMTE-TGMAL---------SNPLDGERR---- 256
Query: 374 QGVRTICLDGLDV--IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANG 430
G + L G++V +D +P+ A +GEI +RG V Y P+A EAF +G
Sbjct: 257 PGTVGLPLPGVEVRIVDEDGGEPLAAG--EVGEIQVRGPNVFSEYWNKPEATAEAFTEDG 314
Query: 431 WFHSGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489
WF +GD+ V D Y I R D II SGG +S++E+E+ L HP V E AV+ PD
Sbjct: 315 WFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDP 374
Query: 490 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 548
WGE+ A V + A ++ + R K+ Y +PK V+ LP++A GK+Q
Sbjct: 375 DWGEAVVAVVVPEAGAAL-----TLAELRAWAREKLAPYKIPKRVIVVDELPRNAMGKVQ 429
Query: 549 K 549
K
Sbjct: 430 K 430
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 2e-48
Identities = 134/536 (25%), Positives = 215/536 (40%), Gaps = 72/536 (13%)
Query: 30 ATLHPTRKSVV--YGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQ 87
A L P R + V + +T+ + R A+ L + G ++V+A N +
Sbjct: 5 ARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALH 64
Query: 88 FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 147
F GA+ +N RL+A+ + +L A
Sbjct: 65 FACARVGAIYVPLNWRLSASELDALLQDAE------------------------------ 94
Query: 148 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTT 207
P L++ D + LA + +P P + S+ L +TSGT+
Sbjct: 95 -PRLLLGDDAVAAGRTDVEDLAAFIAS----ADALEPADTPSIPPER-VSLIL-FTSGTS 147
Query: 208 ASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL 267
PKGV++S R + N ++ ++ + FL PMFH G + G SI +
Sbjct: 148 GQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILV 207
Query: 268 R---QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPP 324
+ G+TH+ P + A A P L ++ + T GAP
Sbjct: 208 SNGFEPKRTLGRLGDPALGITHYFCVPQMAQAF-RAQPGFDAAALRHLTALFTGGAPHAA 266
Query: 325 SLLFAMSQKGFRITHTYGLTE---LTGPASVCAWKPEWDSLPFETQARLNARQGVRTICL 381
+ G + +G++E + G + C + A+ G I
Sbjct: 267 EDILGWLDDGIPMVDGFGMSEAGTVFGMSVDCD--------------VIRAKAGAAGIPT 312
Query: 382 DG--LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLA 438
V+D + N PA GE+++RG + GY + P+A AF +GWF +GD+A
Sbjct: 313 PTVQTRVVDDQGND-CPAG--VPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIA 369
Query: 439 VKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF 498
+ D + + DR KD+ ISGGEN+ E+E VL HP + E AVV D +WGE
Sbjct: 370 RRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLA 429
Query: 499 VTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALPKSATGKIQKHLLR 553
+ A E + ++ Y VPK + + ALP++A+GK+QK LR
Sbjct: 430 IVPADGAP-----LDLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLR 480
|
Length = 488 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 3e-48
Identities = 154/548 (28%), Positives = 248/548 (45%), Gaps = 47/548 (8%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMY 84
++ + A+ +P +K++ + K T+ + + +RFA+ L KL + G V+++ PN P
Sbjct: 29 YVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAV 88
Query: 85 EAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEG 144
+G +AG ++ N + + L H S A VI+ + + N +
Sbjct: 89 IGYYGTLLAGGIVVQTNPLYTERELEYQL-HDSGAKVILCLDL-------VFPRVTNVQS 140
Query: 145 KLKTPHLIV--IGDESCDSKQLEYA-LARGAIEYEKFLETGDPEFAWKPPEDEWQSIA-- 199
K H+IV I D K L Y + + + + W E E +
Sbjct: 141 ATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEV 200
Query: 200 ----------LGYTSGTTASPKGVVVSHRGAYLMSLNGA-LIWGMNEGA-VFLWTLPMFH 247
L YT GTT PKGV+++H+ +L G ++ EG V L LP FH
Sbjct: 201 PCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFH 260
Query: 248 GNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI 306
G + +L+ + G + L + K V+ AI H VT F AP + A+ N SP
Sbjct: 261 VYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLN-SPLLKE 319
Query: 307 LPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFE 365
++++ + AP P + G ++ YGLTE + P + F
Sbjct: 320 YDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTE-SSPVT---------HSNFL 369
Query: 366 TQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 425
+ R+ GV + + ++ T + +P IGEIV++G +MKGY P+
Sbjct: 370 WEKRVPGSIGVPWPDTEAM-IMSLETGEALPPG--EIGEIVVKGPQIMKGYWNKPEETAA 426
Query: 426 AFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVA 485
+GW H+GD+ D + +KDR KD+I++ G N+ EVE+VLY H V E +
Sbjct: 427 VLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIG 486
Query: 486 RPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSAT 544
PD GE+ AFV LK E E + E++++F R + +Y VPK F LPK+
Sbjct: 487 VPDPYRGETVKAFVVLK-EGTECSE----EELNQFARKYLAAYKVPKVYEFRDELPKTTV 541
Query: 545 GKIQKHLL 552
GKI + +L
Sbjct: 542 GKILRRVL 549
|
Length = 563 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 4e-46
Identities = 147/557 (26%), Positives = 223/557 (40%), Gaps = 87/557 (15%)
Query: 29 AATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQF 88
A P R ++V G + T+ + R R A L +G G V + A N EA
Sbjct: 12 VADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAML 71
Query: 89 GAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKT 148
GA A AV ++N R + ++L + + ++ ++EF E L + KL+
Sbjct: 72 GAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLP-----KLR- 125
Query: 149 PHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE--FAWKPPEDEWQSIALGYTSGT 206
L+V+ D S + L GA++YE L G PE F + P+D + L YT GT
Sbjct: 126 -TLVVVEDGSGN------DLLPGAVDYEDALAAGSPERDFGERSPDD----LYLLYTGGT 174
Query: 207 TASPKGVVVSHRGAYLMSLNGALI---------WGM------NEGAVFLWTLPMFHGNGW 251
T PKGV+ + + L G + G P+ HG G
Sbjct: 175 TGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQ 234
Query: 252 SYTWSLAALCGTSICLRQVT---AKAVYTAIATHGVTHFC------AAPVVLNAIANASP 302
++ A G ++ L A V+ I V A P+ L+A+ P
Sbjct: 235 WAAFA-ALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPL-LDALEARGP 292
Query: 303 EDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFR-------ITHTYGLTELTGPASVCAW 355
D L+++ + + GA PS+ ++ +T + G +E TG
Sbjct: 293 YD----LSSLFAIASGGALFSPSV-----KEALLELLPNVVLTDSIGSSE-TGFGG---- 338
Query: 356 KPEWDSLPFETQARLNARQGVRTICLD-GLDVIDARTNQPVPADGKTIGEIVMRGSCVMK 414
T A+ G + V+D N PV IG I RG +
Sbjct: 339 --------SGTVAKGAVHTGGPRFTIGPRTVVLDEDGN-PVEPGSGEIGWIARRGH-IPL 388
Query: 415 GYLKNPKANEEAF--ANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEK 470
GY K+P+ E F +G + GD A D I + R I +GGE + EVE+
Sbjct: 389 GYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEE 448
Query: 471 VLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWV 530
L HP V +A VV PDERWG+ A V L+ A D ++ CR+ + Y V
Sbjct: 449 ALKAHPDVADALVVGVPDERWGQEVVAVVQLREGAR-PD----LAELRAHCRSSLAGYKV 503
Query: 531 PKSVVFAA-LPKSATGK 546
P+++ F + +S GK
Sbjct: 504 PRAIWFVDEVQRSPAGK 520
|
Length = 533 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 2e-45
Identities = 125/539 (23%), Positives = 191/539 (35%), Gaps = 116/539 (21%)
Query: 28 RAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQ 87
+ A + T+ + + RFA+ L L + G V ++ P+ P + A
Sbjct: 1 KTAFYCGEQS--------LTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAF 52
Query: 88 FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 147
AGAV ++N L + L+ + +S
Sbjct: 53 LACLKAGAVAVALNPLL--------------------------TPQDLEHILDDSG---- 82
Query: 148 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTT 207
L+V + D + W YTSGTT
Sbjct: 83 -AALLVTEAD-------------------------DIAY--------WL-----YTSGTT 103
Query: 208 ASPKGVVVSHRGAYLMS-LNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTS-- 264
PKGV+ HR + + G+ G + +F G + G S
Sbjct: 104 GKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLFPLFSGASAV 163
Query: 265 ICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN--ASPEDTILPLTNVVNVNTAGAPP 322
+ T +AV +A H T P + A+ A + V +AG
Sbjct: 164 LLPGWPTPEAVLDLLARHRPTVLFGVPALYRALLESGAGSAPLFRSVRLCV---SAGEAL 220
Query: 323 PPSLL-FAMSQKGFRITHTYGLTE---LTGPASVCAWKPEWDSLP---FETQARLNARQG 375
P L G I G TE + A +P P +E ARL G
Sbjct: 221 PAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAARPGTTGRPVPGYE--ARLVDESG 278
Query: 376 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSG 435
+ VPA T+G++ +RG + GY P+ + +GW +G
Sbjct: 279 -----------------REVPAG--TVGDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTG 319
Query: 436 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 495
D + D + + R D+I G+ +S +EVE L HP V EAAVVA PDE
Sbjct: 320 DRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRL 379
Query: 496 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLR 553
AFV +P + L D+ +F R ++ Y P+ + F LP++ATGK+Q+ LR
Sbjct: 380 KAFVVPRPGEA--IQQLLERDLHRFLRERLAPYKCPRQIEFLDTLPRTATGKLQRFRLR 436
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 4e-45
Identities = 154/554 (27%), Positives = 238/554 (42%), Gaps = 84/554 (15%)
Query: 28 RAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQ 87
A +P R +V+ G + ++ + +R R A+ L +L I G TV V PNV Y
Sbjct: 36 DHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITF 95
Query: 88 FGAPMAGA--VLNSINIRLNATVVAFILSHASSAVVIVD--QEFFSLAEEALKMMEANSE 143
F G VL + R + + AF S +A++IV F A +++
Sbjct: 96 FALLRLGVAPVLALPSHRA-SELGAFA-SQIEAALLIVARQHSGFDYRPFARELV----- 148
Query: 144 GKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 203
K T +++ E+ LE AL A G A E +A
Sbjct: 149 AKHPTLRHVIVAGEAEHPSVLEAALCHPA---------GLFTPAPPADAGE---VAFFQL 196
Query: 204 SG-TTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAAL-C 261
SG TT +PK + +H Y A I G ++ V+L LP H S +L
Sbjct: 197 SGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLA 256
Query: 262 GTSICLRQ-VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGA 320
G ++ L + + + I HGVT P + + A+ + L+++ + GA
Sbjct: 257 GGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERA-DLSSLRLLQVGGA 315
Query: 321 PPPPSL--------------LFAMSQKGFRITHTYGL---TELTGPASVCAWKPEWDSLP 363
+L +F M++ GL T L P +
Sbjct: 316 RLSATLARRVPAVLGCQLQQVFGMAE---------GLVNYTRLDDPPEII---------- 356
Query: 364 FETQARLNARQGVRTIC-LDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA 422
TQ R + D + V+DA N PV G+ GE++ RG ++GY + P+
Sbjct: 357 IHTQGR--------PLSPDDEVRVVDADGN-PVAP-GEV-GELLTRGPYTIRGYYRAPEH 405
Query: 423 NEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEA 481
N AF A+G++ SGDL + PD Y+ ++ R+KD I GGE I++ EVE +L HP V +A
Sbjct: 406 NARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDA 465
Query: 482 AVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVF-AAL 539
A+VA PDE GE CAF+ +K A + +F R + + ++ +P + F +L
Sbjct: 466 ALVAMPDELLGEKSCAFIVVKEPPLR------AAQLRRFLRERGLAAFKLPDRIEFVDSL 519
Query: 540 PKSATGKIQKHLLR 553
P +A GKI K LR
Sbjct: 520 PLTAVGKIDKKALR 533
|
Length = 542 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 4e-44
Identities = 145/548 (26%), Positives = 214/548 (39%), Gaps = 69/548 (12%)
Query: 28 RAATLHPTRKSVV--YGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYE 85
+ A P + +VV +G+ YT+ R A+ L I G V+ P
Sbjct: 31 QTARAMPDKIAVVDNHGAS-YTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTI 89
Query: 86 AQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGK 145
GAV + + ++L+ + + F L + N
Sbjct: 90 IYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQN---- 145
Query: 146 LKTPHL--IVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 203
+ P L IV D+ A A ++ + + +P + A+ +T
Sbjct: 146 -QLPQLQQIVGVDKL--------APATSSLSLSQIIADYEP-LTTAITTHGDELAAVLFT 195
Query: 204 SGTTASPKGVVVSHRG------AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSL 257
SGT PKGV+++H AY LN + VF+ P+ H G+ + +
Sbjct: 196 SGTEGLPKGVMLTHNNILASERAYCARLN------LTWQDVFMMPAPLGHATGFLHGVTA 249
Query: 258 AALCGTSICLRQV-TAKAVYTAIATHGVT-HFCAAPVV---LNAIANASPEDTILPLTNV 312
L G L + T A + T A P + LN + + + L
Sbjct: 250 PFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRF--- 306
Query: 313 VNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTE-----LTGPASVCAWKPEWDSLPFETQ 367
G P + Q+G ++ YG TE + + D
Sbjct: 307 --FLCGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAA-- 362
Query: 368 ARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 427
GV +D +AR + +P + GE RG V GYL P+ A
Sbjct: 363 -------GVEIKVVD-----EAR--KTLPPGCE--GEEASRGPNVFMGYLDEPELTARAL 406
Query: 428 -ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 486
GW++SGDL YI+I R KD+I+ GGENISS EVE +L HP + +A VVA
Sbjct: 407 DEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAM 466
Query: 487 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFAALPKSATG 545
PDER GE CA+V LK L L E V+ F R ++ Y + VV LP++A+G
Sbjct: 467 PDERLGERSCAYVVLKAPHHSL---TLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASG 523
Query: 546 KIQKHLLR 553
KIQK LLR
Sbjct: 524 KIQKFLLR 531
|
Length = 547 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 6e-44
Identities = 142/544 (26%), Positives = 200/544 (36%), Gaps = 62/544 (11%)
Query: 30 ATLHPTRKSVVYGSKHYTWHQTYR----RCRRFASALSKLSIGLGTTVSVIAPNVPAMYE 85
A P + +V+ S TYR R R A L + G V++ N E
Sbjct: 7 AQTTPDKPAVIMASTGEV--VTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLE 64
Query: 86 AQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGK 145
+ A +G +N L A+I+ + + +I +A LK
Sbjct: 65 VCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPG----- 119
Query: 146 LKTPHLIVIGDESCDSKQ-LEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTS 204
L++ GD + A+A G P P DE + Y+S
Sbjct: 120 -VRHRLVLDGDGELEGFVGYAEAVA------------GLPA---TPIADESLGTDMLYSS 163
Query: 205 GTTASPKGVV-------VSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSL 257
GTT PKG+ L WG V+L P++H +
Sbjct: 164 GTTGRPKGIKRPLPEQPPDTPLPLTAFLQRL--WGFRSDMVYLSPAPLYHSAPQRAVMLV 221
Query: 258 AALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP--LTNVVNV 315
L GT I + A+ I +GVTH P + + + PE+ L+++
Sbjct: 222 IRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKL-PEEVRDKYDLSSLEVA 280
Query: 316 NTAGAPPPPSLLFAMSQKGFRITHT-YGLTELTGPASVCAWKPEWDSLPFETQARLNARQ 374
A AP PP + M I H Y TE G + C EW + P T R A
Sbjct: 281 IHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLG-FTACD-SEEWLAHP-GTVGR--AMF 335
Query: 375 GVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA--NGWF 432
G I D +P G I G + YL +P EA W
Sbjct: 336 GDLHILDDDG--------AELPP--GEPGTIWFEGGRPFE-YLNDPAKTAEARHPDGTWS 384
Query: 433 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 492
GD+ D Y+ + DR +IISGG NI E E +L HP V +AAV P+E G
Sbjct: 385 TVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLG 444
Query: 493 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHL 551
E A V D LA ++ FCR ++ P+S+ F LP+ TGK+ K L
Sbjct: 445 EEVKAVVQPVDGVDPGP--ALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRL 502
Query: 552 LRAK 555
LR +
Sbjct: 503 LRDR 506
|
Length = 511 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 163 bits (413), Expect = 1e-43
Identities = 154/532 (28%), Positives = 237/532 (44%), Gaps = 67/532 (12%)
Query: 44 KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR 103
K T+ + R RRFA AL L + G V V+ PNV G AG V + N
Sbjct: 54 KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPT 113
Query: 104 LNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHL--IVIGDESCDS 161
+ + A + +++ + + GK+K L IV+G+E +
Sbjct: 114 ALESEIKKQAEAAGAKLIVTN---------------DTNYGKVKGLGLPVIVLGEEKIE- 157
Query: 162 KQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQS--IALGYTSGTTASPKGVVVSHRG 219
GA+ +++ LE D E+ Q+ AL ++SGTT KGV+++HR
Sbjct: 158 ---------GAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRN 208
Query: 220 --AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC-------GTSICLRQV 270
A L S ++ M V L +P FH + + +C G + + +
Sbjct: 209 LVANLCSSLFSVGPEMIGQVVTLGLIPFFH------IYGITGICCATLRNKGKVVVMSRF 262
Query: 271 TAKAVYTAIATHGVTHF-CAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFA 329
+ A+ T V+ P++LN + N E+ L + + TA AP P LL A
Sbjct: 263 ELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTA 322
Query: 330 MSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDV- 386
K G ++ YGLTE + C D A+ N+ + L L+V
Sbjct: 323 FEAKFPGVQVQEAYGLTEHS-----CITLTHGDPEKGHGIAKKNSVGFI----LPNLEVK 373
Query: 387 -IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDN 444
ID T + +P + T GE+ +R CVM+GY N + + +GW H+GD+ D
Sbjct: 374 FIDPDTGRSLPKN--TPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDG 431
Query: 445 YIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPE 504
I I DR+K++I G ++ E+E +L HP V +AAVV PDE GE P A V + P+
Sbjct: 432 DIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPK 491
Query: 505 ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAK 555
A E + ED+ F A + Y + V F ++PKS +GKI + LL+ K
Sbjct: 492 AKESE-----EDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEK 538
|
Length = 546 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 1e-43
Identities = 133/531 (25%), Positives = 203/531 (38%), Gaps = 108/531 (20%)
Query: 21 TPLWFINRAATLHPTRKSVVY----GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVI 76
T + P +++Y G + T+ + Y R R AS L L I G V++
Sbjct: 17 TLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIF 76
Query: 77 APNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALK 136
A N P A GAV I +A+IL+ + S V+ V+ +E L
Sbjct: 77 AANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVE------NQELLD 130
Query: 137 MMEANSEGKLKTPHLIVIGDE-----SCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 191
++ E K LIVI D + LE G + + A P
Sbjct: 131 LVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKP 190
Query: 192 EDEWQSIA-LGYTSGTTASPKGVVVSHR--GAYLMSLNGALIWGMNEGAVFLWTLPMFH- 247
+D +A + YTSGTT +PKGV+++HR A + ++ L + G L LP+ H
Sbjct: 191 DD----LATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPP-IGPGDRVLSFLPLAHI 245
Query: 248 -GNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAP--------VVLNAIA 298
+ +L G ++ ++ + + + T P ++ +A
Sbjct: 246 FERAFEGGLALYG--GVTVLFKEDP-RTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVA 302
Query: 299 NASPEDTIL--------------------PLTNVVNVN-------------------TAG 319
A L PL+ ++ + + G
Sbjct: 303 KAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGG 362
Query: 320 APPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTI 379
AP P LL G I YGLTE + SV P+ R + T+
Sbjct: 363 APLSPELLHFFRSLGIPILEGYGLTETSAVVSV--NPPD--------------RFVLGTV 406
Query: 380 CLDGLDVIDARTNQPVP-ADGKTI--GEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSG 435
+P+P + K GEI++RG VMKGY KNP+A EAF +GWF +G
Sbjct: 407 ------------GKPLPGIEVKIADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTG 454
Query: 436 DLAVKHPDNYIEIKDRLKDVII-SGGENISSVEVEKVLYLHPLVLEAAVVA 485
DL D Y+ I R K++I S G+NI+ +E L PL+ + VV
Sbjct: 455 DLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG 505
|
Length = 613 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 1e-42
Identities = 153/548 (27%), Positives = 235/548 (42%), Gaps = 103/548 (18%)
Query: 46 YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 105
YT+ RR A+ L KL I G V ++ PN P A GA GAV + N
Sbjct: 51 YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYT 110
Query: 106 ATVVAFILSHASSAVVIVDQEFFS------LAEEALKMM--EANSEGKLKTPHLIVIGDE 157
+A AS A +I+ Q + ++ + ++ + EG L L +
Sbjct: 111 PAEIAKQAK-ASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQADEN 169
Query: 158 SCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSH 217
++ P+D +AL Y+SGTT PKGV+++H
Sbjct: 170 ELPEVEIS-------------------------PDD---VVALPYSSGTTGLPKGVMLTH 201
Query: 218 RGAYLMSLNGALIWG------MNEGAVFLWTLPMFHGNGWSYTWSLAALCG-----TSIC 266
+G L++ + G + V L LPMFH Y+ + LCG +
Sbjct: 202 KG--LVTSVAQQVDGENPNLYFHSDDVILCVLPMFH----IYSLNSVLLCGLRVGAAILI 255
Query: 267 LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSL 326
+ + A+ I H VT P ++ AIA SP L+++ V + AP L
Sbjct: 256 MPKFEIGALLELIQRHKVTIAPFVPPIVLAIAK-SPVVEKYDLSSIRMVLSGAAPLGKEL 314
Query: 327 LFAMSQK--GFRITHTYGLTELTGPA-SVC-AWKPEWDSLPFETQA-------RLNARQG 375
A K + YG+TE GP ++C A+ E PF ++ R NA
Sbjct: 315 EDAFRAKLPNAVLGQGYGMTE-AGPVLAMCLAFAKE----PFPVKSGSCGTVVR-NAE-- 366
Query: 376 VRTICLDGLDVIDART------NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-A 428
L ++D T NQP GEI +RG +MKGYL +P+A
Sbjct: 367 --------LKIVDPETGASLPRNQP--------GEICIRGPQIMKGYLNDPEATANTIDK 410
Query: 429 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488
+GW H+GD+ D+ + I DRLK++I G ++ E+E +L HP + +AAVV D
Sbjct: 411 DGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKD 470
Query: 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKI 547
E GE P AFV ++ E+ + +++ +F ++ Y V F ++PK+ +GKI
Sbjct: 471 EVAGEVPVAFV-VRSNGSEITE----DEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKI 525
Query: 548 QKHLLRAK 555
+ LRAK
Sbjct: 526 LRKDLRAK 533
|
Length = 537 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 2e-42
Identities = 141/547 (25%), Positives = 211/547 (38%), Gaps = 73/547 (13%)
Query: 28 RAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQ 87
A + P+ + V YG + R R A L L + G V+++ N P +E
Sbjct: 1 PAVIMAPSGEVVTYG-------ELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVY 53
Query: 88 FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 147
+ A +G IN L A +A+I+ + + V+IV A E + A
Sbjct: 54 WAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAG------ 107
Query: 148 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTT 207
P L+V+ G YE+ L P DE + Y+SGTT
Sbjct: 108 VPLLLVVAGP-----------VPGFRSYEEALAAQPDT----PIADETAGADMLYSSGTT 152
Query: 208 ASPKGVVVSHRG-----AYLMSLNGALIWG-MNEGAVFLWTLPMFHGNGWSYTWSLAALC 261
PKG+ G A M L +V+L P++H + S AL
Sbjct: 153 GRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALG 212
Query: 262 GTSICLRQVTAKAVYTAIATHGV-------THFCAAPVVLNAIANASPED--TILPLTNV 312
GT + + + A+ I + V T F V + + PE+ ++++
Sbjct: 213 GTVVVMEKFDAEEALALIERYRVTHSQLVPTMF----VRMLKL----PEEVRARYDVSSL 264
Query: 313 VNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPE-WDSLPFETQARL 370
A AP P + AM G I Y +E G V E W + P + +
Sbjct: 265 RVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGG---VTVITSEDWLAHP-GSVGK- 319
Query: 371 NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-AN 429
A G I + +P IG + Y +P+ A +
Sbjct: 320 -AVLGEVRILDE--------DGNELPP--GEIGTVYFEMDGYPFEYHNDPEKTAAARNPH 368
Query: 430 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489
GW GD+ D Y+ + DR D+IISGG NI E+E +L HP V + AV PDE
Sbjct: 369 GWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDE 428
Query: 490 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQ 548
GE A V AD D LA ++ + R ++ Y P+S+ F LP++ TGK+
Sbjct: 429 EMGERVKAVVQPADGADAGD--ALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLY 486
Query: 549 KHLLRAK 555
K LR +
Sbjct: 487 KRRLRDR 493
|
Length = 502 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 8e-41
Identities = 118/401 (29%), Positives = 175/401 (43%), Gaps = 41/401 (10%)
Query: 171 GAIEYEKFLE--TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLM----- 223
IE+ KF E D +F KP + A+ Y+SGTT + KGVV++HR M
Sbjct: 172 KRIEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFV 231
Query: 224 SLNGALIWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSICLRQVTAKAVYTAIATH 282
+ V+L LPMFH G S + L +L T + +R+ A + I
Sbjct: 232 RFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRF 291
Query: 283 GVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLL--FAMSQKGFRITHT 340
VTHF P +L A+ + L ++ V+ AP + F +
Sbjct: 292 KVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQG 351
Query: 341 YGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL------DVIDARTNQP 394
YG+TE T + N + + + L V+D T
Sbjct: 352 YGMTESTAVGT----------------RGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCL 395
Query: 395 VPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN-GWFHSGDLAVKHPDNYIEIKDRLK 453
+P GE+ ++G VMKGYL NPKA + GW +GD+A D Y+ I DRLK
Sbjct: 396 LPPGNC--GELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLK 453
Query: 454 DVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL 513
++I G I+ ++E VL HP +++AAV A PD+ GE P AFV + +
Sbjct: 454 EIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGS-----TLS 508
Query: 514 AEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLR 553
E V + ++ Y + VVF ++PKS GKI + L+
Sbjct: 509 QEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELK 549
|
Length = 560 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 2e-40
Identities = 112/377 (29%), Positives = 156/377 (41%), Gaps = 54/377 (14%)
Query: 200 LGYTSGTTASPKGVVVSHR------GAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY 253
L YTSGTT PKG + HR + G VF WT P W++
Sbjct: 93 LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFE----LAPRPGDVF-WT-PA----DWAW 142
Query: 254 TWSL------AALCGTSIC---LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE- 303
L A G + +++ + + + +GVT+ P L + E
Sbjct: 143 IGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKMMRRVGSER 202
Query: 304 -DTILPLTNVVNVNTAGAPPPPSLL-FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDS 361
L L V + G LL +A + G + YG TE CA
Sbjct: 203 ARYDLRLRAVA---SGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCA------- 252
Query: 362 LPFETQARLNARQGVRTICLDG--LDVIDARTNQPVPADGKTIGEI-VMRGSCVM-KGYL 417
A AR G + G + V+D +PVP +GEI V R VM GY
Sbjct: 253 ------ALGPARPGSMGKPVPGHEVAVVDDA-GRPVPPG--EVGEIAVKRPDPVMFLGYW 303
Query: 418 KNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPL 477
NP+A FA W +GDL + D Y+ K R DVI S G I E+E+ L HP
Sbjct: 304 NNPEATAAKFAGDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPA 363
Query: 478 VLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF- 536
VLEAAVV PD GE AFV L +LA ++ + ++++ ++ P+ + F
Sbjct: 364 VLEAAVVGVPDPERGEIVKAFVVLAE--GVEPSDELATELQELVKSRLAAHEYPREIEFV 421
Query: 537 AALPKSATGKIQKHLLR 553
LP + TGKI++ LR
Sbjct: 422 DELPMTTTGKIRRRELR 438
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 3e-40
Identities = 148/545 (27%), Positives = 218/545 (40%), Gaps = 74/545 (13%)
Query: 26 INRAATLHPTRKSVVYGSKHY--TWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAM 83
+ RAAT P ++V ++ T+ + R A+ L + V+V+APN
Sbjct: 7 LRRAATRAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDA 66
Query: 84 YEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSE 143
A GAV +N RL +A ++ ++ +
Sbjct: 67 VIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVI------------------AV 108
Query: 144 GKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 203
+ G LA G + E+ P P E E Q + YT
Sbjct: 109 DAQVMDAIFQSGSGVR-------VLALGDLVGLGEPESAGPPIEDPPREPE-QPAFVFYT 160
Query: 204 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA-AL 260
SGTT PKG V+ R A L + G+ G V L +P++H G+ A AL
Sbjct: 161 SGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAALAL 220
Query: 261 CGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGA 320
GT + + + I VT A P L+A+A A+ E L L ++ +V AGA
Sbjct: 221 DGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDALAAAA-EGAPLKLDSLEHVTFAGA 279
Query: 321 PPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA--RQG-- 375
P ++L ++Q + YG TE +SL + R R G
Sbjct: 280 TMPDAVLERVNQHLPGEKVNIYGTTEAM------------NSL-YMRDPRTGTEMRPGFF 326
Query: 376 --VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH 433
VR + + G + +G+ +V GYL P+A E +GW+
Sbjct: 327 SEVRIVRIGG-------SPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQDGWYR 379
Query: 434 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493
+ D+AV P + I R+ D+IISGGENI EVE+VL P V E V+ PDERWG+
Sbjct: 380 TSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQ 439
Query: 494 SPCAFVTLKP----EADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVFA-ALPKSATGKI 547
S A V + AD LD FCRA ++ + P+ F LPK+A K+
Sbjct: 440 SVTACVVPREGETLSADALD---------TFCRASELADFKRPRRYFFLDELPKNAMNKV 490
Query: 548 QKHLL 552
+ L
Sbjct: 491 LRRQL 495
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 4e-39
Identities = 144/537 (26%), Positives = 221/537 (41%), Gaps = 65/537 (12%)
Query: 39 VVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98
++ G + ++ + +R R A L+ L + G V+++ N A +EA + A GA
Sbjct: 5 IISGDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAV 64
Query: 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL----KMMEANSEGKLKTPHLIV- 153
+N +A+IL + + V+I + AL ++ TP I
Sbjct: 65 PVNWHFKPEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVLSV------PTPPEIAA 118
Query: 154 ---IGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASP 210
I GAI++E +L +P + P Q ++ YTSGTT P
Sbjct: 119 AYRISPALLTPPA-------GAIDWEGWLAQQEP---YDGPPVP-QPQSMIYTSGTTGHP 167
Query: 211 KGV-----VVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSI 265
KGV A ALI+G+ G L T P++H +Y L G +
Sbjct: 168 KGVRRAAPTPEQAAAA--EQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLV 225
Query: 266 CLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-----DTILPLTNVVNVNTAGA 320
+ + + I H +TH P + + E D ++++ +V A A
Sbjct: 226 LQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYD----VSSLRHVIHAAA 281
Query: 321 PPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTI 379
P P + AM + G I YG TE +G + + S P T + A G
Sbjct: 282 PCPADVKRAMIEWWGPVIYEYYGSTE-SGAVTFAT-SEDALSHP-GTVGK--AAPGAE-- 334
Query: 380 CLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKG--YLKNPKANEEAFANGWFHSGDL 437
L +D +P+P IGEI R Y P+ E G+ SGD+
Sbjct: 335 ----LRFVDE-DGRPLPQG--EIGEIYSR-IAGNPDFTYHNKPEKRAEIDRGGFITSGDV 386
Query: 438 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497
D Y+ + DR +D++ISGG NI E+E VL+ P V + AV PD +GE+ A
Sbjct: 387 GYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMA 446
Query: 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLR 553
V +P A LD D+ +A++ Y VPK + A LP+ +GKI K LR
Sbjct: 447 VVEPQPGA-TLD----EADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLR 498
|
Length = 509 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 147 bits (375), Expect = 5e-39
Identities = 106/374 (28%), Positives = 150/374 (40%), Gaps = 61/374 (16%)
Query: 202 YTSGTTASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLA 258
YTSG+T PKGV+V HRG L L G+ G L F + W L
Sbjct: 100 YTSGSTGRPKGVMVEHRGLVNLLAWLQERY--GLTAGDRVLQFASFSFDASVWEIFPPL- 156
Query: 259 ALCGTSICL----RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 314
L G ++ L +A+ + H +T P +L A+ +A + L V+
Sbjct: 157 -LSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDALEPAALPSLRLVI- 214
Query: 315 VNTAGAPPPPSLL--FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFET----QA 368
G P L+ + G R+ + YG TE T V + + D L + +
Sbjct: 215 --VGGEALPAELVRRWRELFPGARLVNAYGPTETTV--DVTYHEVDPDDLDGGSVPIGRP 270
Query: 369 RLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 428
N R + V+D +PVP G GE+ + G+ V +GYL P+ E F
Sbjct: 271 IANTR----------VYVLDED-LRPVP-VG-VPGELYIGGAGVARGYLNRPELTAERFV 317
Query: 429 NGWFH--------SGDLAVKHPDNYIEIKDRLKD-VIISG-----GENISSVEVEKVLYL 474
F +GDLA PD +E R D V I G GE +E L
Sbjct: 318 PDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVKIRGYRIELGE------IEAALLA 371
Query: 475 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV 534
HP V EA VVAR D + A+V A+ A ++ F ++P Y VP +
Sbjct: 372 HPGVREAVVVAREDGAGEKRLVAYVVPAAGAEL-----DAAELRAFLAERLPDYMVPSAF 426
Query: 535 VF-AALPKSATGKI 547
V ALP + GK+
Sbjct: 427 VVLDALPLTPNGKV 440
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 6e-39
Identities = 128/522 (24%), Positives = 203/522 (38%), Gaps = 92/522 (17%)
Query: 46 YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 105
Y++ + RFA+ L+ L +G G V + P P +Y A G GAV +
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPL----- 55
Query: 106 ATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE 165
F + E ++ +LE
Sbjct: 56 ---------------------FSAFGPEPIR-------------------------DRLE 69
Query: 166 YALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSL 225
A+ I + E DPE L +TSGTT PKGV+ HR
Sbjct: 70 LGEAKVLITTPELYERTDPE----------DPALLHFTSGTTGKPKGVLHVHRAVVAHYA 119
Query: 226 NGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR--QVTAKAVYTAIATHG 283
+ + V+ T G SY L G ++ + + A+ Y +
Sbjct: 120 TARYVLDLRPDDVYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFDAERWYGILEEEK 179
Query: 284 VTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTAGAPPPPSLL-FAMSQKGFRITHTY 341
VT + AP L + A PE L+++ ++ + G P P ++ + G I T+
Sbjct: 180 VTVWYTAPTALRMLMRAGPELAARYDLSSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTW 239
Query: 342 GLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTN----QPVPA 397
TE TG + + + + G L G++ + PV
Sbjct: 240 WQTE-TGAIMIANY------------PGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTG 286
Query: 398 DGKTIGEIVMRGS--CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDV 455
G+ GE+ ++ + +GYL N + +F +GW+ +GDLA + D Y R DV
Sbjct: 287 PGQV-GELALKPGWPSMFRGYLGNEERYASSFVDGWYLTGDLAYRDEDGYFWFVGRADDV 345
Query: 456 IISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKP--EADELDKGKL 513
I + G + EVE L HP V EA V+ +PD GE AFV+L+P E E +L
Sbjct: 346 IKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEPSE----EL 401
Query: 514 AEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRA 554
++ F R ++ + P+ + F LPK+ +GKI + LL+A
Sbjct: 402 RRELLTFARQRLGAAVAPREIHFVDNLPKTRSGKIMRRLLKA 443
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 6e-39
Identities = 137/565 (24%), Positives = 216/565 (38%), Gaps = 63/565 (11%)
Query: 28 RAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQ 87
R ATL + G++ T H+ A+ L +L + G V++ A N E
Sbjct: 15 RLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWL 74
Query: 88 FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 147
AG ++ +N R + A SA+++V E E +L
Sbjct: 75 LAVACAGGIVAPLNYRWS-------FEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLP 127
Query: 148 TPHLIVIGDESCDSKQLEYA-LARGAIEYEKFLETGDPEFAWKPPEDEWQSIAL-GYTSG 205
+ V + S + + ++ L T + ++AW P L +TSG
Sbjct: 128 SLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYAWAP-----DDAVLICFTSG 182
Query: 206 TTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSI 265
TT PKGV +SH + SL I G E V+L T P+ H G S ++ + +
Sbjct: 183 TTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHV 242
Query: 266 CLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPS 325
L + AKA AI H VT P ++ + + + + + V G S
Sbjct: 243 LLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSS 302
Query: 326 LLFAMSQKGF---RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN--ARQGVRTIC 380
L ++K F ++ YG+TE C+ SL F T L+ + +
Sbjct: 303 RLLPDAKKLFPNAKLFSAYGMTE------ACS------SLTFMT---LHDPTLESPKQTL 347
Query: 381 LDGLDVIDARTNQPV------PA----------DGKTIGEIVMRGSCVMKGYLKNPKAN- 423
+ +QP PA + +G I+ RG VM GY
Sbjct: 348 QTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNSETA 407
Query: 424 EEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483
+GW +GD+ + + R D I +GGEN+ EVE VL HP V V
Sbjct: 408 SVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVV 467
Query: 484 VARPDERWGESPCAFVTLK-----PEADELDKGK----LAEDVSKFCRAK-MPSYWVPKS 533
V PD R E A V L+ + ++ + K +E + CR K + + +PK
Sbjct: 468 VGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKL 527
Query: 534 VVF--AALPKSATGKIQKHLLRAKA 556
V P + TGKI++ +R +
Sbjct: 528 FVQWRKPFPLTTTGKIRRDEVRREV 552
|
Length = 563 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-38
Identities = 135/524 (25%), Positives = 210/524 (40%), Gaps = 64/524 (12%)
Query: 46 YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 105
++ + + RR +AL +L + V ++ + A GA AG V ++N L
Sbjct: 31 LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90
Query: 106 ATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKT-PHLIVIGDESCDSKQL 164
A A++L + + VV V E + + AL GK H +V+G QL
Sbjct: 91 ADDYAYMLEDSRARVVFVSGELLPVIKAAL--------GKSPHLEHRVVVGRPEAGEVQL 142
Query: 165 EYALARGAIEYEKFLETGDPEFAWKP--PEDE--WQSIALGYTSGTTASPKGVVVSHRGA 220
+ L T +F +D W Y+SG+T PKGVV +H
Sbjct: 143 A-----------ELLATESEQFKPAATQADDPAFWL-----YSSGSTGMPKGVVHTHSNP 186
Query: 221 YLMS-LNGALIWGMNEGAVFLWTLPMFH----GNGWSYTWSLAALCGTSICL-RQVTAKA 274
Y + L G+ E V +F GN ++ S+ A T++ + + T A
Sbjct: 187 YWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGA---TTVLMGERPTPDA 243
Query: 275 VYTAIATHGVTHFCAAPVVLNAIANA--SPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ 332
V+ + H T F P + A+ P + + L +AG P +
Sbjct: 244 VFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCT---SAGEALPAEV------ 294
Query: 333 KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDG--LDVIDAR 390
G R +G+ + G S E + F + + R G + G L ++
Sbjct: 295 -GQRWQARFGVDIVDGIGST-----EMLHI-FLSNLPGDVRYGTSGKPVPGYRLRLVGDG 347
Query: 391 TNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKD 450
Q V A GE+++ G Y N + F W SGD V++ D
Sbjct: 348 -GQDVAAG--EPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAG 404
Query: 451 RLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDK 510
R D++ G +S E+E L HP VLEAAVV DE P AF+ L+P D
Sbjct: 405 RTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDI--D 462
Query: 511 GKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLR 553
L ++ + + ++ Y P+ +VF LPK+ATGKIQ+ LR
Sbjct: 463 TALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLR 506
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 1e-37
Identities = 95/329 (28%), Positives = 137/329 (41%), Gaps = 65/329 (19%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 261
YTSGTT +PKGV+++HR + + ++ G L LP+ H
Sbjct: 95 YTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAH--------VFEQRL 146
Query: 262 GTSICLRQ-------VTAKAVYTAIATHGVTHFCAAPVVLNAIAN--------ASPE--- 303
G + L + + + + T F A P V I A P
Sbjct: 147 GEYLPLSSGARVNFAESPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRK 206
Query: 304 --DTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDS 361
L + + GAP PP +L G I YGLTE +G A+V +P
Sbjct: 207 LFRWALGGGRLRFAVSGGAPLPPEVLEFFRALGIPILEGYGLTETSGVATV--NRPG--- 261
Query: 362 LPFETQARLNARQGVRTI--CLDGLDV-IDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 418
+ T+ L G++V I GEI++RG VMKGY K
Sbjct: 262 -----------DIRIGTVGKPLPGVEVRIAED------------GEILVRGPNVMKGYYK 298
Query: 419 NPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVEVEKVLYLHP 476
NP+A EA +GW H+GD+ D ++ I DR KD+I+ +GG+NI+ +E L P
Sbjct: 299 NPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASP 358
Query: 477 LVLEAAVVARPDERWGESPCAFVTLKPEA 505
+ +A VV D+R A + L PEA
Sbjct: 359 YISQAVVVG--DDR--PYLTALIVLDPEA 383
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 2e-37
Identities = 147/550 (26%), Positives = 224/550 (40%), Gaps = 60/550 (10%)
Query: 26 INRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYE 85
+ AA P ++V+ + T+ R AS L L + G V++
Sbjct: 6 LEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVT 65
Query: 86 AQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGK 145
A FGA +AG V IN L A VA IL+ + +++ E L AL G
Sbjct: 66 AMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALP-------GC 118
Query: 146 LKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQS--IALGYT 203
LI++GD + S+ + K L GD + PP S A+ YT
Sbjct: 119 HDLRTLIIVGDPAHASEGHPGEE---PASWPKLLALGDAD----PPHPVIDSDMAAILYT 171
Query: 204 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGT 263
SG+T PKGVV+SHR + + A L LP+ G++ + + T
Sbjct: 172 SGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGAT 231
Query: 264 SICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN-ASPEDTILPLTNVVNVNTAGAPP 322
+ + + V A+ HG+T A P + +A PE L + N+ GA P
Sbjct: 232 VVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPESAAPSLRYL--TNSGGAMP 289
Query: 323 PPSL-----LFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVR 377
+L + R+ YGLTE A++ + LP E R G +
Sbjct: 290 RATLSRLRSFLPNA----RLFLMYGLTE--------AFRSTY--LPPEEVDRRPDSIG-K 334
Query: 378 TICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFH--- 433
I + V+ ++ P + GE+V RG+ V GY +P+ E F F
Sbjct: 335 AIPNAEVLVLREDGSECAPGE---EGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGEL 391
Query: 434 --------SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVA 485
SGD + + ++ R ++I + G +S EVE+V Y LV EA
Sbjct: 392 HLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFG 451
Query: 486 RPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSAT 544
PD G++ VT P +ELD+ + CRA++P+Y VP + ALP++A
Sbjct: 452 VPDPTLGQAIVLVVT-PPGGEELDR----AALLAECRARLPNYMVPALIHVRQALPRNAN 506
Query: 545 GKIQKHLLRA 554
GKI + L
Sbjct: 507 GKIDRKALAK 516
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 2e-37
Identities = 140/559 (25%), Positives = 228/559 (40%), Gaps = 117/559 (20%)
Query: 46 YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL-------- 97
YT+ + +FA+ L +L + G V + P +P +Y A GA GA++
Sbjct: 74 YTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFM 133
Query: 98 -NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGD 156
++ RL S A V++ L+ A+ LK H++++G+
Sbjct: 134 EEAVRDRLED----------SEAKVLIT------TPALLERKPADDLPSLK--HVLLVGE 175
Query: 157 ESCDSKQLEYALARGAIEYEKFLETGDPEFA--WKPPEDEWQSIALGYTSGTTASPKGVV 214
+ G +++ +E EF W ED L YTSG+T PKGV+
Sbjct: 176 DV--------EEGPGTLDFNALMEQASDEFDIEWTDRED---GAILHYTSGSTGKPKGVL 224
Query: 215 VSHRGAYLMSLNGALIWGMNEGAVFLWTL-PMFHGNGW----SY----TWSLAALCGTSI 265
H G + ++E V+ T P GW SY W L G +
Sbjct: 225 HVHNAMLQHYQTGKYVLDLHEDDVYWCTADP-----GWVTGTSYGIFAPW----LNGATN 275
Query: 266 CLRQV--TAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-----DTILPLTNVVNVNTA 318
+ + + Y + + VT + AP + + A + D L+++ ++ +
Sbjct: 276 VIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYD----LSSLRHILSV 331
Query: 319 GAP-PPPSLLFAMSQKGFRITHTYGLTELTGPASVCAW-----------KPEWDSLPFET 366
G P P + + M G I + +TE TG + + KP LP
Sbjct: 332 GEPLNPEVVRWGMKVFGLPIHDNWWMTE-TGGIMIANYPAMDIKPGSMGKP----LP--- 383
Query: 367 QARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS--CVMKGYLKNPKANE 424
G+ +D +P + +G + ++ +M+G NP+ E
Sbjct: 384 --------GIEAAIVD-------DQGNELPPN--RMGNLAIKKGWPSMMRGIWNNPEKYE 426
Query: 425 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484
FA W+ SGD A D Y + R+ DVI + GE + EVE L HP V EA V+
Sbjct: 427 SYFAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVI 486
Query: 485 ARPDERWGESPCAFVTLKP--EADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPK 541
+PD GE AFV L+P E E +L E++ F + + ++ P+ + F LPK
Sbjct: 487 GKPDPVRGEIIKAFVALRPGYEPSE----ELKEEIRGFVKKGLGAHAAPREIEFKDKLPK 542
Query: 542 SATGKIQKHLLRAKAKEMG 560
+ +GKI + +L KA E+G
Sbjct: 543 TRSGKIMRRVL--KAWELG 559
|
Length = 570 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 3e-37
Identities = 131/532 (24%), Positives = 226/532 (42%), Gaps = 72/532 (13%)
Query: 44 KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR 103
+ Y++ + R A+ L I G V++ N P FG GA++ IN R
Sbjct: 36 RRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINAR 95
Query: 104 LNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ 163
L A+IL ++ +++++ +F+ + + ++ L+ H+ +
Sbjct: 96 LLREESAWILQNSQASLLVTSAQFYPMYRQ----IQQEDATPLR--HICLTRV---ALPA 146
Query: 164 LEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHR----G 219
+ G + + + PP + + +TSGTT+ PKGVV++H
Sbjct: 147 DD-----GVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFA 201
Query: 220 AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC--GTSICLRQVTAKAVYT 277
Y + AL + V+L +P FH + T ++AA T + L + +A+A +
Sbjct: 202 GYYSAWQCAL----RDDDVYLTVMPAFHID-CQCTAAMAAFSAGATFVLLEKYSARAFWG 256
Query: 278 AIATHGVTHFCAAPVVLNAI--ANASPEDTILPLTNV---VNVNTAGAPPPPSLLFAMSQ 332
+ + T P+++ + S D L V +N++ F +
Sbjct: 257 QVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQ-----EKDAF-EER 310
Query: 333 KGFRITHTYGLTE-LTG-----PASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDV 386
G R+ +YG+TE + G P K W S+ R G C + ++
Sbjct: 311 FGVRLLTSYGMTETIVGIIGDRPGD----KRRWPSI---------GRPG---FCYEA-EI 353
Query: 387 IDARTNQPVPADGKTIGEIVMRG---SCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHP 442
D N+P+PA IGEI ++G + K Y +PKA + A+GW H+GD
Sbjct: 354 RDD-HNRPLPAG--EIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDE 410
Query: 443 DNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLK 502
+ + DR ++I GGEN+S VE+E ++ HP + + VV D E+ AFV L
Sbjct: 411 EGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLN 470
Query: 503 PEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLR 553
E + L + E+ FC M + VP + LP++ +GKI K L+
Sbjct: 471 -EGETLSE----EEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517
|
Length = 517 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 9e-37
Identities = 134/540 (24%), Positives = 207/540 (38%), Gaps = 72/540 (13%)
Query: 36 RKSVVYGSKHYTWHQTYRRCRRFASAL-SKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94
+ + + +W + R A+AL ++L V V+ N P A ++G
Sbjct: 19 DRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSG 78
Query: 95 AVLNSIN-IRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIV 153
V +N R A + I HA +V+ + L + + V
Sbjct: 79 IVPVGLNPTRRGAALARDIA-HADCQLVLTESAHAELLDGLDP----------GVRVINV 127
Query: 154 IGDESCDSKQLEYALA--RGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPK 211
DS LA R A +P F P+D + I +TSGT+ PK
Sbjct: 128 ------DSPAWADELAAHRDA----------EPPFRVADPDDLFMLI---FTSGTSGDPK 168
Query: 212 GVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ-V 270
V +HR + A +G+ V ++P+FH N W++A G SI LR+
Sbjct: 169 AVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKF 228
Query: 271 TAKAVYTAIATHGVTHF--CAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLF 328
+A + +G T+ P+ P+D PL +V N P F
Sbjct: 229 SASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPL-RIVYGNEGA--PGDIARF 285
Query: 329 AMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVID 388
A + G + +G TE G ++ P P L G+ ++D
Sbjct: 286 A-RRFGCVVVDGFGSTE--GGVAI-TRTP---DTPPGALGPL----------PPGVAIVD 328
Query: 389 ARTNQPVP-----ADGKT-----IGEIV-MRGSCVMKGYLKNPKANEEAFANGWFHSGDL 437
T P IGE+V G +GY +P+A+ E G + SGDL
Sbjct: 329 PDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDL 388
Query: 438 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497
A + D Y RL D + GEN+ + +E++L +P E AV A PD G+ A
Sbjct: 389 AYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMA 448
Query: 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALPKSATGKIQKHLLRAKA 556
+ L P A + D AE ++ + + P V V A LP++AT K+ K L A+
Sbjct: 449 ALVLAPGA-KFDPDAFAEFLAA--QPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEG 505
|
Length = 529 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-35
Identities = 120/412 (29%), Positives = 170/412 (41%), Gaps = 55/412 (13%)
Query: 167 ALARGAIEYE------KFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGA 220
A AIEY K + T + K +D A YTSGTT PKGV V
Sbjct: 58 AFGPKAIEYRLGHSGAKVVVT-NAANRGKLDDD---LFAQMYTSGTTGLPKGVPVPLN-- 111
Query: 221 YLMSLNGALIWG--MNEGAVFLWTL--PMFHGNGWSYTWSLAA----LCGTSICLRQV-- 270
L + + + + + VF W + P GW+Y A G + +
Sbjct: 112 ALAAFYAYMRYAIDLRDDDVF-WNIADP-----GWAYGLYYAITGPLAMGITTVFLEGGF 165
Query: 271 TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNV-NTAGAPPPPSLL-F 328
TA+ Y + GVT+F +P + A+ D + + V ++AG P P ++ +
Sbjct: 166 TAENTYDVLERLGVTNFAGSPTAYRMLM-AAGADAAARIKLKLRVASSAGEPLNPEVVRW 224
Query: 329 AMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLD--V 386
+ G I YG TE P V R G + L G V
Sbjct: 225 FQANLGVTIHDHYGQTETGMP--VGN----------HHALAHEVRAGSMGLPLPGYRIAV 272
Query: 387 IDARTNQPVPADGKTIGEIVMRGS----CVMKGYLKNPKANEEAFANGWFHSGDLAVKHP 442
+D P G++ + + GY +P+ E A W+ +GDL +
Sbjct: 273 LDDDGQ---PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTGDLVERDE 329
Query: 443 DNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLK 502
D Y R DVIIS G I +VE L HP V EAAVV PD GE AFV LK
Sbjct: 330 DGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVLK 389
Query: 503 PEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLR 553
D +LAE++ F + ++ ++ P+ V F ALPK+ +GKIQ+ LLR
Sbjct: 390 EGYAGSD--ELAEELQLFVKKRLSAHAYPREVEFVPALPKTPSGKIQRFLLR 439
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 1e-35
Identities = 139/548 (25%), Positives = 223/548 (40%), Gaps = 74/548 (13%)
Query: 28 RAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQ 87
A +P +++ G++ +++ + +R A+ L+KL I G T V PN+ Y
Sbjct: 31 DQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVF 90
Query: 88 FGAPMAGAV-LNSINIRLNATVVAFILSHASSAVVIVD--QEFF---SLAEEALKMMEAN 141
F G + ++ + + A+ S A+ I+D F A +
Sbjct: 91 FALLKLGVAPVLALFSHRKSELTAYA-SQIEPALYIIDRAHSLFDYDDFARQLQS----- 144
Query: 142 SEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA-L 200
KL T I++ ++ E E FL P K P + +A
Sbjct: 145 ---KLPTLRNIIVAGQT--------------GEAELFLWLESPAEPVKFPPTKSDEVAFF 187
Query: 201 GYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAAL 260
+ G+T +PK + +H Y I + + +L LP H S +L
Sbjct: 188 QLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVF 247
Query: 261 C--GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI-LPLTNVVNVNT 317
G + + + I H VT P + A+ + L ++ V
Sbjct: 248 YAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRADLSSLKLLQVGG 307
Query: 318 AG-----APPPPSLLFAMSQKGFRITHTYGL---TELTGPASVCAWKPEWDSLPFETQAR 369
A A P++ Q+ F + GL T L P + F TQ R
Sbjct: 308 AKFSAAAARRVPAVFGCQLQQVFGMAE--GLVNYTRLDDP----------AEIIFTTQGR 355
Query: 370 LNARQGVRTICL-DGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF- 427
+ D + V+D PV A G+T G ++ RG +GY K P+ N AF
Sbjct: 356 --------PMSPDDEVRVVDDH-GNPV-APGET-GMLLTRGPYTFRGYYKAPEHNAAAFD 404
Query: 428 ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487
A G++++GDL P+ YI + R KD I GGE I++ E+E +L HP V +AA+V+ P
Sbjct: 405 AEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMP 464
Query: 488 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVFA-ALPKSATG 545
DE GE CAF+ ++ A + A + +F R + + Y +P V F +LP +A G
Sbjct: 465 DELLGEKSCAFIVVRDPALK------AAQLRRFLRERGLAEYKLPDRVEFVDSLPLTAVG 518
Query: 546 KIQKHLLR 553
K+ K LR
Sbjct: 519 KVDKKALR 526
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 140 bits (353), Expect = 1e-35
Identities = 148/556 (26%), Positives = 237/556 (42%), Gaps = 67/556 (12%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMY 84
+++AA + R ++ + + T+ + A+AL + G +V++ N P
Sbjct: 26 LLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHP 85
Query: 85 EAQFGAPMAGAVLNSINIRLNATVVAFILSHA---SSAVVIVDQEFFSLAEEALKMMEA- 140
FGA AGA + + L+ LSH S A +++ + +L ALK +E
Sbjct: 86 INFFGALKAGARV----VHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKG 141
Query: 141 ----------NSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 190
++ GK+ TP + D + Y F++ W
Sbjct: 142 LLDRLIVCEDDNWGKVGTPQAPIPADPR-------------IVTYADFVKGAAAPAEW-- 186
Query: 191 PEDEWQSIA-LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGM----NEGAV--FLWTL 243
P +A L YT GTT PKG +++H G +++ +WG G V + L
Sbjct: 187 PAVTPDDVALLQYTGGTTGLPKGAMLTH-GNLTSAVSIYDVWGKPSRATRGDVERVICVL 245
Query: 244 PMFHGNGWSYTWSLAALCGTSICLRQ-VTAKAVYTAIATHGVTHFCAAPVVLNAIANASP 302
P+FH + + G I L Q AV+ I T F P + A+AN P
Sbjct: 246 PLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALAN-DP 304
Query: 303 EDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDS 361
L+++ + + GAP P + +K G ++ +G+TE P + PE
Sbjct: 305 SLEKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGT--GHPPEGPD 362
Query: 362 LPFETQARLNARQGVRTICLDG--LDVIDAR-TNQPVPADGKTIGEIVMRGSCVMKGYLK 418
P G + L G LDV+ + +P +GE+ +RG V +GY
Sbjct: 363 KP-----------GSIGLMLPGIELDVVSLDDPTKVLPPG--EVGELRIRGPNVTRGYWN 409
Query: 419 NPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLV 478
P+ + EAF F +GD+ D Y + DR KD+IISGG N+ +E+ +Y HP V
Sbjct: 410 RPEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGV 469
Query: 479 LEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA- 537
E V+ PD+ GE+ AFV L+P A +L F K+ + +P +V F
Sbjct: 470 QEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRA----FLAGKLGKHELPVAVEFVD 525
Query: 538 ALPKSATGKIQKHLLR 553
LP++ GK+ +H LR
Sbjct: 526 ELPRTPVGKLSRHELR 541
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 2e-35
Identities = 141/534 (26%), Positives = 219/534 (41%), Gaps = 55/534 (10%)
Query: 29 AATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQF 88
AA P R ++ TW + R A+AL L IG V ++ N EA
Sbjct: 52 AAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALL 111
Query: 89 GAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKT 148
A GA + +N +A +++ VI D+EF + + AL
Sbjct: 112 AANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALA----------DC 161
Query: 149 PHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTA 208
P I + + L + A ++ P + + TSGTT
Sbjct: 162 PQATRIVAWTDEDHDLTVEVLIAAHAGQR------------PEPTGRKGRVILLTSGTTG 209
Query: 209 SPKGVVVSHRGAY--LMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSIC 266
+PKG S G L ++ W E + PMFH G+S A+L T +
Sbjct: 210 TPKGARRSGPGGIGTLKAILDRTPWRAEE--PTVIVAPMFHAWGFSQLVLAASLACTIVT 267
Query: 267 LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTA-GAPPPPS 325
R+ +A I H T PV+ + I + E + A G+ P
Sbjct: 268 RRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPD 327
Query: 326 LLFA-MSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN--ARQGVRTICLD 382
++ A M Q G I + Y TE A + A + P + +A + R T
Sbjct: 328 VVIAFMDQFGDVIYNNYNATE----AGMIA-----TATPADLRAAPDTAGRPAEGTE--- 375
Query: 383 GLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP 442
+ ++D + VP G+ +G I +R GY + ++ F +G+ SGD+
Sbjct: 376 -IRILDQDFRE-VP-TGE-VGTIFVRNDTQFDGY--TSGSTKD-FHDGFMASGDVGYLDE 428
Query: 443 DNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLK 502
+ + + R ++I+SGGEN+ +EVEK L HP V EAAV+ DE++G+ AFV LK
Sbjct: 429 NGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLK 488
Query: 503 PEADELDKGKLAEDVSKFCRAKMPSYWVPKS-VVFAALPKSATGKIQKHLLRAK 555
P A E + + R + +Y VP+ VV LP+ ATGKI + L+A+
Sbjct: 489 PGA-----SATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQAR 537
|
Length = 537 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-35
Identities = 93/383 (24%), Positives = 146/383 (38%), Gaps = 57/383 (14%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 261
YTSGTT PK ++SHR + + V LP++H N + WS A
Sbjct: 88 YTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNALTVGWSSALAA 147
Query: 262 GTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA--SPEDTILPLTNVVNVNTA 318
G S+ L R+ +A + + +G T F + + N P+D PL ++
Sbjct: 148 GASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEKPDDRDHPLRKIIGNGLR 207
Query: 319 GAPPPPSLLFAMSQKGFRITHT---YGLTELTGPASVCA--WKPEWDSLPFETQARLNAR 373
P + ++ F + YG TE RL
Sbjct: 208 -----PDIWDEFKER-FGVPRIVEFYGSTE-----GNVGFINLFNKP----GAVGRLP-- 250
Query: 374 QGVRTICLDGLDVI--DARTNQPV-PADGK-------TIGEIVMRGSCVMK--GYLKNPK 421
+ V+ D T +P+ A+G +G ++ + GY +
Sbjct: 251 -------PAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEA 303
Query: 422 ANEEAFAN------GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 475
++ + +F++GDL + Y DRL D GEN+S+ EVE+VL H
Sbjct: 304 TEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKH 363
Query: 476 PLVLEAAVVARPDERW-GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV 534
P V EA V G + A +TL P A D A + + ++P+Y P +
Sbjct: 364 PGVEEANVYGVEVPGTEGRAGMAALTLAPGAA-FDPQAFAAHLDE----QLPAYARPLFL 418
Query: 535 -VFAALPKSATGKIQKHLLRAKA 556
V AA+ + T K QK LR +
Sbjct: 419 RVQAAMETTGTFKYQKTDLRKEG 441
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 2e-35
Identities = 141/525 (26%), Positives = 205/525 (39%), Gaps = 54/525 (10%)
Query: 54 RCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFIL 113
R A+ L+ + G V+V PN GA + ++N R + VA IL
Sbjct: 44 LVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHIL 103
Query: 114 SHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAI 173
+ ++V F + + A + + + V+ D + + A A GA
Sbjct: 104 GRGRARWLVVWPGFKGI-DFAAILAAVPPDALPPLRAIAVVDDAADATP----APAPGAR 158
Query: 174 EYEKFLETGDPEFAWKPPEDEWQSIALGY-TSGTTASPKGVVVSHRGAYLMSLNGAL--I 230
L P A + + AL + TSGTT+ PK +V HR A L+ A+
Sbjct: 159 VQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPK--LVLHRQATLLRHARAIARA 216
Query: 231 WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCG--TSICLRQVTAKAVYTAIATHGVTHFC 288
+G + GAV L LP G ++ L AL G +C A A+ H VTH
Sbjct: 217 YGYDPGAVLLAALPFCGVFG--FSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTF 274
Query: 289 AAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTG 348
+L I + + E P + + AP L +G +T YG +E+
Sbjct: 275 GNDEMLRRILDTAGERADFPSARLFGF-ASFAPALGELAALARARGVPLTGLYGSSEVQ- 332
Query: 349 PASVCAWKPEWD--------SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGK 400
A V P +AR+ AR D D + DG+
Sbjct: 333 -ALVALQPATDPVSVRIEGGGRPASPEARVRAR-----------DPQDGA----LLPDGE 376
Query: 401 TIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISG 459
GEI +R +M+GYL NP A A +G+F +GDL D + R+ D + G
Sbjct: 377 -SGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLG 435
Query: 460 GENISSVEVEKVLYLHPLVLEAAVVARPDERWGES-PCAFVTLKPEADELDKGKLAEDVS 518
G ++ E+E L P V A VV R G++ P AFV A D +
Sbjct: 436 GFLVNPAEIEHALEALPGVAAAQVVGA--TRDGKTVPVAFVIPTDGA-SPD----EAGLM 488
Query: 519 KFCRAKMPSYWVPKSVVFA-ALP--KSATG-KIQKHLLRAKAKEM 559
CR + + VP V A P +SA G KIQKH LR A+
Sbjct: 489 AACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQAR 533
|
Length = 540 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 7e-35
Identities = 106/372 (28%), Positives = 159/372 (42%), Gaps = 54/372 (14%)
Query: 200 LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG-----MNEGAVFLWTLPMFHGNGWSYT 254
+G+TSGTT PKG + HR L + VF+ + P+ ++T
Sbjct: 152 IGFTSGTTGLPKGTMHFHRDI----LAICDAFPRHVLQPTPDDVFIGSPPL------AFT 201
Query: 255 WSLAALC-------GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 307
+ L L +++ L Q T + AI H T AP A+ I
Sbjct: 202 FGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAYRAMLIKVKAFDIS 261
Query: 308 PLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFET 366
L V +AG P + ++ G +I G TE+ F +
Sbjct: 262 SLRKCV---SAGETLPAKVWQDWYERTGLKIIDGIGATEMLHI--------------FIS 304
Query: 367 QARLNARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424
NA+ G + G + ++D + N VP G + +RG + YL + +
Sbjct: 305 ANEENAKPGATGKPVPGYEARIVDDQGN-EVPRG--EAGRLAVRGPTGCR-YLDDE-RQQ 359
Query: 425 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484
E +GW +GD+ + D Y R D+I+S G NI++ EVE L HP V E AV+
Sbjct: 360 EYVRDGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVI 419
Query: 485 ARPDERWGESPCAFVTLKP--EADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPK 541
PDE G+ CA + L+ +A EL LAE + F +A + Y P+ + F ALPK
Sbjct: 420 GVPDEERGQIVCAHIVLRDGTKATEL----LAERLQDFVKAVIAPYKYPREINFVDALPK 475
Query: 542 SATGKIQKHLLR 553
+ TGKIQ+ LR
Sbjct: 476 TQTGKIQRFRLR 487
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 8e-35
Identities = 128/388 (32%), Positives = 174/388 (44%), Gaps = 63/388 (16%)
Query: 190 PPEDEWQSIAL-GYTSGTTASPKGVVVSHRGAYLMSLNG-ALIWGMNEGAVFLWTLPMFH 247
PE + + AL YTSGTT PKGVV+S R A L+ A W V + LP+FH
Sbjct: 122 YPEPDPDAPALIVYTSGTTGPPKGVVLS-RRAIAADLDALAEAWQWTADDVLVHGLPLFH 180
Query: 248 GNGWSYTWSLAAL--CGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT 305
+G L L + + T +A A++ G +F P V + IA A PE
Sbjct: 181 VHGLVLG-VLGPLRIGNRFVHTGRPTPEAYAQALSEGGTLYF-GVPTVWSRIA-ADPE-- 235
Query: 306 ILPLTNVVNVNTAGAPPPPSLLFAMSQ-------------KGFRITHTYGLTELTGPASV 352
A A LL + S G R YG+TE S
Sbjct: 236 -----------AARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLST 284
Query: 353 CA---WKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 409
A +P W LP GV T +D PVP DG+T+GE+ +RG
Sbjct: 285 RADGERRPGWVGLPL---------AGVETRLVDE-------DGGPVPHDGETVGELQVRG 328
Query: 410 SCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLK-DVIISGGENISSVE 467
+ GYL P A AF A+GWF +GD+AV PD I R D+I SGG I + E
Sbjct: 329 PTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGE 388
Query: 468 VEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPS 527
+E L HP V EAAVV PD+ G+ A+V AD++ +L + V++ ++
Sbjct: 389 IETALLGHPGVREAAVVGVPDDDLGQRIVAYVV---GADDVAADELIDFVAQ----QLSV 441
Query: 528 YWVPKSVVFA-ALPKSATGKIQKHLLRA 554
+ P+ V F ALP++A GK+ K L +
Sbjct: 442 HKRPREVRFVDALPRNAMGKVLKKQLLS 469
|
Length = 471 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 2e-34
Identities = 106/384 (27%), Positives = 152/384 (39%), Gaps = 49/384 (12%)
Query: 192 EDEWQSIALGY-TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGN- 249
E L Y TSGTT PK V+ +H + L+ G+ G + H N
Sbjct: 80 ETRADDPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQPGDI--------HLNI 131
Query: 250 ---GWS-YTWS------LAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN 299
GW+ + WS A I + A+ A+ GVT FCA P V
Sbjct: 132 SSPGWAKHAWSSFFAPWNAGATVFGINYPRFDARRYLGALEKFGVTTFCAPPTVWRMFIQ 191
Query: 300 ASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPE 358
+ L V +AG P P ++ + + G I YG TE T
Sbjct: 192 QDLAQYDVRLREAV---SAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMIG----NSP 244
Query: 359 WDSLPFETQARLNARQGVRTICLDGLDV-IDARTNQPVPADGKTIGEIVM----RGSCVM 413
+ + R L G V + + +P T GEI + R +M
Sbjct: 245 GQKVKPGSMGR----------PLPGYRVVLLDDEGKEIPV---TEGEIALDLGDRPIGLM 291
Query: 414 KGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLY 473
GY+ +P+ AF G++ +GD A + D Y+ R DV S IS EVE L
Sbjct: 292 LGYMGDPEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESALL 351
Query: 474 LHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKS 533
HP V EAAVV PD P A++ LKP + +LA ++ R ++ Y +
Sbjct: 352 EHPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEP--SRELALELFAHVRERLAPYKRIRR 409
Query: 534 VVFAA-LPKSATGKIQKHLLRAKA 556
+ F LPK+ +GKI++ LR
Sbjct: 410 IEFVGELPKTISGKIRRVELRKIE 433
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 3e-34
Identities = 136/530 (25%), Positives = 207/530 (39%), Gaps = 84/530 (15%)
Query: 51 TYRRCRR----FASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNA 106
TY A L L + G V+V+A N A + A GA + +N +
Sbjct: 76 TYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSG 135
Query: 107 TVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEY 166
+A + + ++ D EF L + G+L+ DE S
Sbjct: 136 PQLAEVAAREGVKALVYDDEFTDLLSALPPDL-----GRLRAWGGNPDDDEPSGS----- 185
Query: 167 ALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLN 226
+ + KPP+ I + TSGTT +PKG L L
Sbjct: 186 ----TDETLDDLIAGSSTAPLPKPPKPG--GIVI-LTSGTTGTPKGAPRPEPSP-LAPL- 236
Query: 227 GALI----WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQV-TAKAVYTAIAT 281
L+ + E L PMFH GW+ +LA G+++ LR+ +A IA
Sbjct: 237 AGLLSRVPFRAGE--TTLLPAPMFHATGWA-HLTLAMALGSTVVLRRRFDPEATLEDIAK 293
Query: 282 HGVTHFCAAPVVLNAIANASPE-----DTILPLTNVVNVNTAGAPPPPSLLF-AMSQKGF 335
H T PV+L+ I + PE DT +++ + +G+ P L A+ G
Sbjct: 294 HKATALVVVPVMLSRILDLGPEVLAKYDT----SSLKIIFVSGSALSPELATRALEAFGP 349
Query: 336 RITHTYGLTEL-----TGPASV-----CAWKPEWDSLPFETQARLNARQGVRTICLDGLD 385
+ + YG TE+ P + +P +GV LD
Sbjct: 350 VLYNLYGSTEVAFATIATPEDLAEAPGTVGRPP---------------KGVTVKILDENG 394
Query: 386 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNY 445
VP +G I + +GY + + + +G SGD+ D
Sbjct: 395 -------NEVP--RGVVGRIFVGNGFPFEGY-TDGRDKQII--DGLLSSGDVGYFDEDGL 442
Query: 446 IEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEA 505
+ + R D+I+SGGEN+ EVE +L HP V+EAAV+ DE +G+ AFV P A
Sbjct: 443 LFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGA 502
Query: 506 DELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRA 554
LD + + + R + Y VP+ VVF LP++ TGK+ K LR
Sbjct: 503 A-LD----EDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELRE 547
|
Length = 549 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-33
Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 7/173 (4%)
Query: 386 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNY 445
+ D T + +P + GEIV+R ++KGY P+A EA +GW H+GD+ +
Sbjct: 400 ICDFETGELLPLGAE--GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGF 457
Query: 446 IEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEA 505
+ R K+++ G ++ EVE +L HP VL +AVV RPD G+ P AFV LKP A
Sbjct: 458 LHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGA 517
Query: 506 DELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRAKAKE 558
D A + +CR M Y VP+ + ALP +ATGK++K L+A A+E
Sbjct: 518 DL-----TAAALQAWCRENMAVYKVPEIRIVDALPMTATGKVRKQDLQALAEE 565
|
Length = 567 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 3e-33
Identities = 143/533 (26%), Positives = 208/533 (39%), Gaps = 97/533 (18%)
Query: 51 TYRRCRRFASALSKL---SIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNAT 107
TYR+ + ALS+L G + ++ P+ A A +AG V + LN T
Sbjct: 9 TYRKLLTASLALSRLIKKLTKEGENIGIMLPSSVAGALANLALLLAGKV--PVM--LNFT 64
Query: 108 VVAFILSHASSA----VVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ 163
L A VI + F KLK L+V+ E
Sbjct: 65 AGEEGLRSACKQAGIKTVITSRAFLE---------------KLKLEGLVVL-LEGVRIVY 108
Query: 164 LEYALARGAIEYEKFLETGDPEFAWK----PPEDEWQSI---------ALGYTSGTTASP 210
LE A+ + D A+ PP + + +TSG+ P
Sbjct: 109 LEDLRAK--------ISKADKLKAFLAAKLPPALLRLFLAGAKPDDPAVILFTSGSEGLP 160
Query: 211 KGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQV 270
KGVV+SHR A + +N V L LP+FH G + T L L G LR V
Sbjct: 161 KGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFGLTVTLLLPLLTG----LRVV 216
Query: 271 T------AKAVYTAIATHGVTHFCAAPVVLNAIA-NASPEDTILPLTNVVNVNTAGAPPP 323
AK + I + T C P L A NA PED L VV AGA
Sbjct: 217 YYPNPLDAKKIAELIRDYKATILCGTPTFLRGYARNAHPEDF-SSLRLVV----AGAEKL 271
Query: 324 PSLLFAMSQKGF--RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICL 381
P + ++ F RI YG TE + SV + P + + G L
Sbjct: 272 PEATRELFEEKFGIRILEGYGATECSPVISV--------NTP------MGNKPGTVGRPL 317
Query: 382 DGLDV--IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPK--ANEEAFANGWFHSGDL 437
G++V + T++ +P G +++RG VM GYL N + + E +GW+ +GD+
Sbjct: 318 PGIEVRIVSPETHEELPIG--EGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDI 375
Query: 438 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH-PLVLEAAVVARPDERWGESPC 496
D ++ I RLK GGE +S VE++L P A V PDE+ GE
Sbjct: 376 GKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEVPDEKKGEKIV 435
Query: 497 AFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKSVVF-AALPKSATGKI 547
T + D E+++ R A +P+ VP+ ++ +P +GK
Sbjct: 436 LLTTT-EDLDP-------EELNAILREAGLPNLAVPRKILHVDEIPLLGSGKT 480
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 1e-32
Identities = 141/551 (25%), Positives = 209/551 (37%), Gaps = 85/551 (15%)
Query: 32 LHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTT-VSVIAPNVPAMYEAQFGA 90
+V YG + +TW + A+AL L+ V V+ N P M A
Sbjct: 13 AGDDTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAA 72
Query: 91 PMAGAVLNSIN-IRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTP 149
+ G VL +N R A + A I A +++ D E L +
Sbjct: 73 ALGGYVLVGLNTTRRGAALAADI-RRADCQLLVTDAEHRPLLDG---------------- 115
Query: 150 HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTAS 209
L + G D YA A D L +TSGTT +
Sbjct: 116 -LDLPGVRVLDVDTPAYAELVAA----------AGALTPHREVDAMDPFMLIFTSGTTGA 164
Query: 210 PKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL 267
PK V SH L AL +G+ V ++P+FH N W+ A G ++ L
Sbjct: 165 PKAVRCSH--GRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVAL 222
Query: 268 R-QVTAKAVYTAIATHGVTHFCAAPVVLNAIAN--ASPE---DTILPLTNVVNVNTAGAP 321
+ +A + +G T+F V +A A+PE D PL V N A
Sbjct: 223 PAKFSASGFLDDVRRYGATYF---NYVGKPLAYILATPERPDDADNPLR-VAFGNEAS-- 276
Query: 322 PPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTIC 380
P + S++ G ++ YG +E G V + G
Sbjct: 277 --PRDIAEFSRRFGCQVEDGYGSSE--GAVIV-------------VREP-GTPPGSIGRG 318
Query: 381 LDGLDVIDARTNQPVP-----ADGK------TIGEIV-MRGSCVMKGYLKNPKANEEAFA 428
G+ + + T A G IGE+V G+ +GY NP+A E
Sbjct: 319 APGVAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMR 378
Query: 429 NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488
+G + SGDLA + D +I R D + GEN+S+ +E++L HP + AV A PD
Sbjct: 379 HGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPD 438
Query: 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK--MPSYWVPKSV-VFAALPKSATG 545
ER G+ A + L+ A D A F A+ + + P+ V + A LP +AT
Sbjct: 439 ERVGDQVMAALVLRDGAT-FDPDAFAA----FLAAQPDLGTKAWPRYVRIAADLPSTATN 493
Query: 546 KIQKHLLRAKA 556
K+ K L A+
Sbjct: 494 KVLKRELIAQG 504
|
Length = 540 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 4e-32
Identities = 99/365 (27%), Positives = 153/365 (41%), Gaps = 45/365 (12%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWSLAA 259
+TSG+T PKGV +SH L S ++ + + EG VF P F + + A
Sbjct: 104 FTSGSTGKPKGVQISHAN--LASFLDWMVEDFDLTEGDVFSNQAP-FSFDLSVFDLFPAL 160
Query: 260 LCGTSICL--RQVTA--KAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILP-LTNV 312
G ++ + ++ A A++ + HG+T + + P ++ S E LP L
Sbjct: 161 ASGATLYVIPKEQIADPLALFEFLKEHGLTVWVSVPSFA-SLLLLSRELNPESLPSLRTF 219
Query: 313 VNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARL 370
+ G P L A+ ++ RI + YG TE T +V A+ E P L
Sbjct: 220 L---FCGEVLPKKLAKALRRRFPNARIINLYGPTEATV--AVTAY--EVTPEPLSRNEPL 272
Query: 371 ---NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 427
+ G+R + ++D +PVP GE+V+ G V GYL NP+ +AF
Sbjct: 273 PIGYPKPGLRAL------ILDED-GRPVPPG--EEGELVIAGPQVSPGYLNNPEKTAKAF 323
Query: 428 ----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483
W+ +GDL D + R I G I E+E L P V EA V
Sbjct: 324 FQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVV 383
Query: 484 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKS 542
+ P AFV K A + + K + ++P Y +P+ V+ +LP +
Sbjct: 384 LPVPKGEKVVRLVAFVVGKEGA------LDTKALKKELKKRLPPYMIPRRFVYLDSLPLN 437
Query: 543 ATGKI 547
A GKI
Sbjct: 438 ANGKI 442
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-31
Identities = 145/583 (24%), Positives = 205/583 (35%), Gaps = 133/583 (22%)
Query: 47 TWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV-----LNSIN 101
T+ + RR R A+ L L G V ++AP A FG AGA+
Sbjct: 25 TYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83
Query: 102 IRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDS 161
R A + A IL+ A + V+ + AL + LI D
Sbjct: 84 GRHLARLAA-ILADAGARAVLTTSAVLAALRAAL------AAPAALLLLLIAADD----- 131
Query: 162 KQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA-LGYTSGTTASPKGVVVSHRGA 220
A A W+PP + IA L YTSG+T +PKGV+V+H
Sbjct: 132 ----LAALAAA--------------DWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGN- 172
Query: 221 YLMSLNGALI---WGMNEGAVFL-WTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVY 276
L++ N I +G++ V + W LP++H G G V
Sbjct: 173 -LLA-NLRAIARAFGLDPDDVGVSW-LPLYHDMGLIGGLLQPLYAGFP---------VVL 220
Query: 277 T--------------AIATHGVTHFCAAPVVLN-----AIANASPEDTILPL-----TNV 312
AI+ + T AP N + E + L
Sbjct: 221 MSPLAFLRRPLRWLEAISRYRATV-SGAP---NFAYDLCVRRVRDEQ-LAGLDLSSWRVA 275
Query: 313 VNVNTAGAPP-PPSLLFAMSQK----GFR---ITHTYGLTELTGPASVCAWKPEWDSLPF 364
N GA P L +++ GFR YGL E T S L
Sbjct: 276 FN----GAEPVRADTLERFAERFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVVLRV 331
Query: 365 ETQARLNAR--------QGVRTI-----CLDGLDV--IDARTNQPVPADGKTIGEIVMRG 409
+ A R + L G +V +D T +P+P +GEI +RG
Sbjct: 332 DRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVDPETRRPLPDG--EVGEIWVRG 389
Query: 410 SCVMKGYLKNPKANEEAF-------ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGEN 462
V GY P+A E F GW +GDL H D + + RLKD+II G N
Sbjct: 390 PSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLH-DGELYVTGRLKDLIIIRGRN 448
Query: 463 ISSVEVEKVLY-LHPLVLEAAVVARPDERWGESPCAFVT-LKPEADELDKGKLAEDVSKF 520
++E + HP + A A + GE V ++ D LAE +
Sbjct: 449 HYPQDIEATVERAHPALRPGAAAAFSVDGDGEERLVVVAEVRRRGLPADLAALAEAI--- 505
Query: 521 CRAKMPSYWV-PKSVVFA---ALPKSATGKIQKHLLRAKAKEM 559
A + V P VV LPK+++GKIQ R +E+
Sbjct: 506 RAAVAREHGVAPADVVLVRPGTLPKTSSGKIQ----RRACREL 544
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-30
Identities = 85/227 (37%), Positives = 116/227 (51%), Gaps = 26/227 (11%)
Query: 334 GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDG--LDVIDART 391
G I YGLTE + AS + P+ ARL G I + G L VID
Sbjct: 358 GCTIVEGYGLTETSPVAS---------TNPYGELARL----GTVGIPVPGTALKVIDDDG 404
Query: 392 NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKD 450
N+ +P + GE+ ++G VMKGY + P+A EA A GWF +GD+AV PD ++ I D
Sbjct: 405 NE-LPLGER--GELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVD 461
Query: 451 RLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDK 510
R KD+II G N+ E+E V+ HP V A + PDER GE+ FV + D
Sbjct: 462 RKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVAR------DP 515
Query: 511 GKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKA 556
G E++ +C+ Y VPK +V +LP + GKI + LR A
Sbjct: 516 GLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDIA 562
|
Length = 562 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-30
Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 7/154 (4%)
Query: 402 IGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGG 460
+GE+ ++G VMKGY + P+A +E ++GW +GD+A+ D Y+ I DR KD+I+ G
Sbjct: 404 VGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSG 463
Query: 461 ENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKF 520
N+ E+E VL P VL+ A + PDE+ GE+ FV +KP E V +
Sbjct: 464 FNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGE-----TLTKEQVMEH 518
Query: 521 CRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLR 553
RA + Y VPK+V F LP + GKI + LR
Sbjct: 519 MRANLTGYKVPKAVEFRDELPTTNVGKILRRELR 552
|
Length = 562 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 3e-30
Identities = 140/518 (27%), Positives = 218/518 (42%), Gaps = 59/518 (11%)
Query: 56 RRFASALSKLSIGL--GTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFIL 113
R+ A+ LS + GL G V+VI P VP + G V I+L A + + L
Sbjct: 52 RKAANVLSG-ACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYRL 110
Query: 114 SHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAI 173
AS A IV + + A +++ + + KL ++ + S D L + A
Sbjct: 111 -QASKAKCIVTSDELAPAVDSIASECPSLKTKL------LVSEHSRDGWLNFKELLKEAS 163
Query: 174 EYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYL-MSLNGALIWG 232
++T E +A+ +TSGTT PK SH L + +NG
Sbjct: 164 TEHTCVKTKSQE-----------PMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLD 212
Query: 233 MNEGAVFLWTLPMFHGNGW--SYTWSLAA--LCGTSIC---LRQVTAKAVYTAIATHGVT 285
+ + W + GW + WSL + + G + L + K + ++ + +T
Sbjct: 213 LTPSDIM-WNMS---DTGWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPIT 268
Query: 286 HFCAAPVVLNAIANASPED-TILPLTNVVNVNTAGAPPPPSLLFA-MSQKGFRITHTYGL 343
FC+AP V + +D T ++ + T G P P +L +Q G + YG
Sbjct: 269 TFCSAPTVYRMLVQ---QDLTSYKFKSLRHCVTGGEPLNPEVLEQWKAQTGLDLYEGYGQ 325
Query: 344 TELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIG 403
TE TG +CA F+ G + D + +ID N P T G
Sbjct: 326 TE-TG--LICA--------NFKGMKIKPGSMGKASPPYD-VQIIDDNGNVLPPG---TEG 370
Query: 404 EIVMRGS-----CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIIS 458
+I +R C+ Y+ NP+ ++ +GD + D Y R DVI S
Sbjct: 371 DIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYITGDRGIMDEDGYFWFVGRADDVINS 430
Query: 459 GGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVS 518
G I EVE L HP V+E+AVV+ PD GE AFV L P+ D +L +++
Sbjct: 431 SGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFVVLAPQFLSHDPEQLTKELQ 490
Query: 519 KFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK 555
+ ++ Y P+ V F LPK+ TGKI+++ LR K
Sbjct: 491 EHVKSVTAPYKYPRKVEFVQELPKTITGKIKRNELRDK 528
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-29
Identities = 96/381 (25%), Positives = 143/381 (37%), Gaps = 68/381 (17%)
Query: 202 YTSGTTASPKGVVVSHRGA--YLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY------ 253
YTSG+T PKGVV++HR +L + L G+ G L S
Sbjct: 106 YTSGSTGKPKGVVITHRNICNFLRAEGAIL--GIRPGDRVL--------QFASIAFDVSI 155
Query: 254 -----TWSL-AALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 307
T L I ++ + + + VT P +L + PED
Sbjct: 156 LEIFTTLLAGGTLV---IPPEELRLEDLAEFLNRLRVTVAHLTPSLLALL---DPED--- 206
Query: 308 PLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQ 367
+ ++ + G P +L+ S+ R+ +TYG TE T A+ P
Sbjct: 207 -VPSLRTLILGGEACPQALVDRWSKPR-RLLNTYGPTEATVTATASRLTP---------- 254
Query: 368 ARLNARQGVRTI--CLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 423
I L V+D VP +GE+ + G V +GYL P+
Sbjct: 255 ------GKPVNIGRPLPNYTCWVLDPDLEPLVPIG--AVGELCIGGPGVARGYLNRPELT 306
Query: 424 EEAFANG--W--------FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLY 473
E F W + +GDL D +E R D + G+ I E+E VL
Sbjct: 307 AEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLR 366
Query: 474 LHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP-K 532
P V+ AAVV D+ G+ AF+ + A + R ++PSY VP
Sbjct: 367 ALPGVVVAAVVLLLDDPGGKQLVAFLAVDGAAGGEPADVDIALLRSALRERLPSYMVPSV 426
Query: 533 SVVFAALPKSATGKIQKHLLR 553
V LP +A+GK+ + LR
Sbjct: 427 YVPLDELPLTASGKVDRKALR 447
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-28
Identities = 137/567 (24%), Positives = 214/567 (37%), Gaps = 113/567 (19%)
Query: 34 PTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMA 93
+V+ G + +++ + + A +L + I G T V NV Y F
Sbjct: 37 SDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKL 96
Query: 94 GAVLNSINIRLNATVVAFILSHASS-----------AVVIVDQEFFSLAEEALKMMEANS 142
G +NA + SH S A++I D++ +++ +
Sbjct: 97 GVA------PVNA-----LFSHQRSELNAYASQIEPALLIADRQHALFSDDD--FLNTLV 143
Query: 143 EGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP-PEDEWQSIALG 201
++++ D+ G + + +F P P DE L
Sbjct: 144 AEHSSLRVVLLLNDD-------------GEHSLDDAINHPAEDFTATPSPADEVAFFQL- 189
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 261
+ G+T +PK + +H Y I G +L LP H S +L
Sbjct: 190 -SGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFL 248
Query: 262 --GTSICLRQVTAKAVYTAIATHGVTHFCAAPVV-------LNAIANASPEDTILPLTNV 312
GT + +A + I H V +V L AIA + L +
Sbjct: 249 AGGTVVLAPDPSATLCFPLIEKHQVN---VTALVPPAVSLWLQAIAEGGSRAQLASL-KL 304
Query: 313 VNVNTAGAPPPPSL--------------LFAMSQKGFRITHTYGL---TELTGPASVCAW 355
+ V GA +L +F M++ GL T L
Sbjct: 305 LQV--GGARLSETLARRIPAELGCQLQQVFGMAE---------GLVNYTRLDDSDERI-- 351
Query: 356 KPEWDSLPFETQARLNARQGVRTICLDG-LDVIDARTNQPVPADGKTIGEIVMRGSCVMK 414
F TQ R + D + V DA N P+P G +G ++ RG +
Sbjct: 352 --------FTTQG--------RPMSPDDEVWVADADGN-PLP-QG-EVGRLMTRGPYTFR 392
Query: 415 GYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLY 473
GY K+P+ N AF ANG++ SGDL PD YI + R KD I GGE I++ E+E +L
Sbjct: 393 GYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLL 452
Query: 474 LHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPK 532
HP V+ AA+V+ DE GE CAF+ +K + L A + +F R + + + +P
Sbjct: 453 RHPAVIHAALVSMEDELMGEKSCAFLVVK---EPLK----AVQLRRFLREQGIAEFKLPD 505
Query: 533 SV-VFAALPKSATGKIQKHLLRAKAKE 558
V +LP +A GK+ K LR
Sbjct: 506 RVECVDSLPLTAVGKVDKKQLRQWLAS 532
|
Length = 536 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-28
Identities = 62/159 (38%), Positives = 82/159 (51%), Gaps = 8/159 (5%)
Query: 401 TIGEIVMRGSCVMKGYLKNPKANEEA-FANGWFHSGDLAVKHPDNYIEIKDRLKDVIISG 459
GEI +RG VM GY P + A+G+F +GD+ V Y +I DR KD+I+
Sbjct: 405 EPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVS 464
Query: 460 GENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK 519
G N+ E+E+V+ HP VLE A V PDE GE+ FV K D EDV
Sbjct: 465 GFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKK------DPALTEEDVKA 518
Query: 520 FCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLRAKAK 557
FC+ ++ +Y PK V F LPK+ GKI + LR
Sbjct: 519 FCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRDGKA 557
|
Length = 557 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 7e-28
Identities = 96/372 (25%), Positives = 165/372 (44%), Gaps = 36/372 (9%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALI-WGMNEGAVFLWTLPMFHGNGWSYTWSLAAL 260
+T GTT PK V +H S+ + + ++ + +P++HG+G +AAL
Sbjct: 183 FTGGTTGLPKMVPWTH-ANIASSVRAIITGYRLSPRDATVAVMPLYHGHGL-----IAAL 236
Query: 261 CGTSICLRQV--------TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 312
T V +A + I G T + A P + + + +
Sbjct: 237 LATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAA 296
Query: 313 VN-VNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWK-PEWDSLPFETQAR 369
+ + + AP A+ + + +G+TE T + + P +
Sbjct: 297 LRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGL 356
Query: 370 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN 429
+ G + I + G D P+PA +GE+ +RG+ V++GYL +P F +
Sbjct: 357 VGRSTGAQ-IRIVGSD------GLPLPAG--AVGEVWLRGTTVVRGYLGDPTITAANFTD 407
Query: 430 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489
GW +GDL + I+ R+K++I GGE IS VE VL HP V+EAAV PD+
Sbjct: 408 GWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQ 467
Query: 490 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQ 548
+GE+ A + + A AE++ +FCR ++ ++ +P S A+ LP +A G +
Sbjct: 468 LYGEAVAAVIVPRESA-----PPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLD 522
Query: 549 KHLLRAKAKEMG 560
+ RA A++ G
Sbjct: 523 R---RAVAEQFG 531
|
Length = 534 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 1e-27
Identities = 62/156 (39%), Positives = 86/156 (55%), Gaps = 7/156 (4%)
Query: 403 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGEN 462
GE+ ++G VM GY + P+A +E +GW +GD+AV + ++ I DR KD+I+ G N
Sbjct: 405 GELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFN 464
Query: 463 ISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCR 522
+ E+E V+ LHP VLE A V P E GE+ FV K D E++ CR
Sbjct: 465 VYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKK------DPSLTEEELITHCR 518
Query: 523 AKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAK 557
+ Y VPK V F LPKS GKI + LR +A+
Sbjct: 519 RHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEAR 554
|
Length = 560 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 4e-27
Identities = 102/381 (26%), Positives = 154/381 (40%), Gaps = 68/381 (17%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGM---------------NEGAVFLWTLPMF 246
YT GTT PKGV+ L G + G FL P+
Sbjct: 10 YTGGTTGMPKGVMWRQ-EDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACPLM 68
Query: 247 HGNG-WSYTWSLAALC-GTSICL---RQVTAKAVYTAIATHGVTHFC------AAPVVLN 295
HG G W +L+AL G ++ L + V+ + H V A P+ L
Sbjct: 69 HGAGQWL---ALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARPL-LE 124
Query: 296 AIANASPEDTILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFRITHTYGLTELTG-PA 350
A+ A D L+++ ++++GA P LL + + G +E G +
Sbjct: 125 ALEAAGRYD----LSSLRAISSSGAMWSPEVKQGLLELLP--NLALVDALGASETGGGGS 178
Query: 351 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS 410
SV + FE G T+ V+D ++ P G+ G I G
Sbjct: 179 SVSRAGGASATGKFEL--------GPDTV------VLDEDGSEVPPGSGEV-GWIARGGR 223
Query: 411 CVMKGYLKNPKANEEAF--ANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSV 466
V GY K+P+ + F +G + GD A D I + R I +GGE +
Sbjct: 224 -VPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVFPE 282
Query: 467 EVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP 526
EVE+ L HP V +A VV PDERWG+ A V L+ A LD ++ CR +
Sbjct: 283 EVEEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGA-GLD----LAELRDHCRQHLA 337
Query: 527 SYWVPKSVVF-AALPKSATGK 546
Y +P+++V +P++ +GK
Sbjct: 338 GYKLPRAIVVVDTVPRAPSGK 358
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 7e-27
Identities = 138/566 (24%), Positives = 231/566 (40%), Gaps = 88/566 (15%)
Query: 26 INRAATLHPTRKSVVYGSKH-----YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNV 80
++ A P + ++++ +T+ + A+ L IG G TV + +
Sbjct: 23 VDAYADEEPDKLALIWCDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLT---L 79
Query: 81 PAMYEAQFGAPMA----GAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALK 136
YE F + +A GA+ L A + + + A +++ E + +
Sbjct: 80 KRRYEFWF-SMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGE-----DGVPE 133
Query: 137 MMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQ 196
++ + L+++GD + G I+++K +E P+F + P
Sbjct: 134 HIDEAAPECGSPTLLVLVGDPVPE----------GWIDFDKEIENASPDF--ERPTGNDA 181
Query: 197 S----IALGY-TSGTTASPKGVVVSHRGAY-LMSLNGALIW-GMNEGAVFL------WTL 243
+ I L Y TSGTT PK +V H Y L + A W + EG + L W
Sbjct: 182 TCNDDILLVYFTSGTTGMPK--MVEHDHTYPLGHIVTAKYWQNVKEGGLHLTVADTGWGK 239
Query: 244 PMFHGNGWSY-TWSLAALCGTSICL---RQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN 299
++ G Y W + G ++ + + K + I +GVT FCA P + +
Sbjct: 240 AVW---GKLYGQW----IAGAAVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTIYRFLIK 292
Query: 300 ASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAW-KP 357
L+++ TAG P P + +K G ++ +G TE T + W +P
Sbjct: 293 EDLSK--YDLSSLRYCTTAGEPLNPEVFNTFKEKTGIKLMEGFGQTETTLTIATFPWMEP 350
Query: 358 EWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-----CV 412
+ S+ + + + I DG + G+ GEIV+R S +
Sbjct: 351 KPGSM-----GKPSPGYDIDIIDPDG---------KSCEV-GEE-GEIVIRTSDGKPLGL 394
Query: 413 MKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 472
GY ++P+ E + +G++H+GD A D Y+ R D+I S G I EVE L
Sbjct: 395 FMGYYRDPERTAEVWHDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESAL 454
Query: 473 YLHPLVLEAAVVARPDERWGESPCAFVTLKP--EADELDKGKLAEDVSKFCRAKMPSYWV 530
HP VLE AV PD G+ A + L E E K +L + V K Y
Sbjct: 455 IQHPAVLECAVTGVPDPIRGQVVKATIVLTKGYEPSEELKKELQDHVKK----VTAPYKY 510
Query: 531 PKSVVFAA-LPKSATGKIQKHLLRAK 555
P+ + F LPK+ +GKI++ +R K
Sbjct: 511 PRIIEFVDELPKTISGKIRRVEIREK 536
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 9e-27
Identities = 110/461 (23%), Positives = 164/461 (35%), Gaps = 80/461 (17%)
Query: 51 TYR----RCRRFASAL-SKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 105
TYR R R A L + +G G V+V+ + A AGA ++
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 106 ATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE 165
A +AFIL A + +++ D S + P +++ E
Sbjct: 61 AERLAFILEDAGARLLLTDSALASRLAGLV------------LPVILLDPLELAALDDAP 108
Query: 166 YALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGA--YLM 223
A +G + A+ + YTSG+T PKGVVV+HR L
Sbjct: 109 APPPPDA-------PSGPDDLAY-----------VIYTSGSTGRPKGVVVTHRSLVNLLA 150
Query: 224 SLNGALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAALCGTSICL-----RQVTAKAVYT 277
L +G++ L + F + +L A G ++ + + A +
Sbjct: 151 WLARR--YGLDPDDRVLQFASLSFDASVEEIFGALLA--GATLVVPPEDEERDDAALLAA 206
Query: 278 AIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKG--F 335
IA H VT P +L +A A P L ++ V G P+L+ +G
Sbjct: 207 LIAEHPVTVLNLTPSLLALLAAALPPA----LASLRLVILGGEALTPALVDRWRARGPGA 262
Query: 336 RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTI--CLDG--LDVIDART 391
R+ + YG TE T I L L V+D
Sbjct: 263 RLINLYGPTETTV---WSTATLVDPDDAPRESP--------VPIGRPLANTRLYVLDDD- 310
Query: 392 NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF---------HSGDLAVKHP 442
+PVP +GE+ + G V +GYL P+ E F F +GDL P
Sbjct: 311 LRPVPVGV--VGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLP 368
Query: 443 DNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483
D +E R+ D + G I E+E L HP V EA V
Sbjct: 369 DGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-26
Identities = 65/179 (36%), Positives = 92/179 (51%), Gaps = 9/179 (5%)
Query: 383 GLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP-KANEEAFANGWFHSGDLAVKH 441
L V D T +P IG I ++G V KGY + P K EE A+G+F +GDL
Sbjct: 331 SLRVTDPETGAELPPGE--IGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKID 388
Query: 442 PDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTL 501
Y+ I R KD+IISGG N+ EVE + P V+E+AV+ P +GE A V
Sbjct: 389 ERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVP 448
Query: 502 KPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559
KP A LD + + ++ + PK V F LP++ GK+QK+LLR + ++
Sbjct: 449 KPGAA-LD----EAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADL 502
|
Length = 504 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-26
Identities = 137/581 (23%), Positives = 230/581 (39%), Gaps = 105/581 (18%)
Query: 27 NRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEA 86
++ A ++ + V + YT+ + Y R A L KL + G V + P +P EA
Sbjct: 57 DQIALIYDS--PVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIP---EA 111
Query: 87 QFGAPMAGAVLNSINIRLNATVV---------AFILSHASSAVVIVDQ---------EFF 128
A +A A + +I+ +VV A + A +++ +
Sbjct: 112 VI-AMLACARIGAIH-----SVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYK 165
Query: 129 SLAEEALKMMEANSEGKLKTPHLIVI--GDESCDSK---QLEYALARGAIEYEKF--LET 181
L ++AL++ + K ++++ G K L++A +E+
Sbjct: 166 PLLDKALEL------SQHKPHKVLILNRGQVPAPLKPGRDLDWAELMAKARPVDCVPVES 219
Query: 182 GDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHR--GAYLMSLNGAL--IWGMNEGA 237
DP + + YTSGTT PKGVV R G Y ++L ++ I+G+ G
Sbjct: 220 TDPLY-------------ILYTSGTTGKPKGVV---RDTGGYAVALKWSMRNIYGIKPGD 263
Query: 238 VFLWTLPMFHGNGW----SYTWSLAALCG-TSIC-----LRQVTAKAVYTAIATHGVTHF 287
VF + GW SY L G T++ + A A + I +GV
Sbjct: 264 VFWAASDV----GWVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNAL 319
Query: 288 CAAPVVLNAIANASPEDTIL---PLTNVVNVNTAGAP-PPPSLLFAMSQKGFRITHTYGL 343
AP + AI P+ + L+++ + AG P+L + G + +
Sbjct: 320 FTAPTAIRAIRKQDPDGEYIKKYDLSSLRALFLAGERLDSPTLEWIEKTLGVPVIDHWWQ 379
Query: 344 TELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLD--VIDARTNQPVPADGKT 401
TE TG L + G + G D V+D T + +
Sbjct: 380 TE-TGWPITANCV---------GLELLPIKPGSPGKPVPGYDVQVLDE-TGEELGPG--E 426
Query: 402 IGEIVMRGSCVMKGYLKNPKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKD 454
+G IV++ + G L ++E F + +GD K D Y+ + R D
Sbjct: 427 LGNIVIKLP-LPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGRTDD 485
Query: 455 VIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLA 514
VI G +S+ E+E+ + HP V E AVV DE G+ P V LK + ++D +L
Sbjct: 486 VINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVLKDDC-KIDADQLE 544
Query: 515 EDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLRA 554
++ R ++ ++VVF LPK+ +GKI + LR
Sbjct: 545 NEIVALVREQIGPVAAFRNVVFVKRLPKTRSGKILRRTLRK 585
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 7e-25
Identities = 133/541 (24%), Positives = 223/541 (41%), Gaps = 63/541 (11%)
Query: 30 ATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKL--SIGL--GTTVSVIAPNVPAMYE 85
A + P R +V+ +YR+ ++AL+++ GL G V++++ N P
Sbjct: 7 AQIAPDRPAVIVAETGEQV--SYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALV 64
Query: 86 AQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGK 145
+ A +G + +IN L A +I+ + + V++ A AL + A
Sbjct: 65 VLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLV--------ASAALDGLAAKVGAD 116
Query: 146 LKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSG 205
L P + G E G +E L P +P + Y+SG
Sbjct: 117 L--PLRLSFGGE-----------IDGFGSFEAALAGAGPRLTEQPC-----GAVMLYSSG 158
Query: 206 TTASPKGV-------VVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258
TT PKG+ V G ++++ A + ++E ++ + P++H + +
Sbjct: 159 TTGFPKGIQPDLPGRDVDAPGDPIVAIARAF-YDISESDIYYSSAPIYHAAPLRWCSMVH 217
Query: 259 ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNT 317
AL GT + ++ A+A + + +T P + + + T ++++ V
Sbjct: 218 ALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIH 277
Query: 318 AGAPPPPSLLFAM-SQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGV 376
A AP P + AM G + Y TE G + + P+W + P V
Sbjct: 278 AAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDS--PDWLAHP----------GSV 325
Query: 377 RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG---WFH 433
L L + D N+ +PA IG + + YL +P+ A W
Sbjct: 326 GRSVLGDLHICDDDGNE-LPAG--RIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTT 382
Query: 434 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493
GDL D Y+ + DR +IISGG NI E E L +HP V + AV+ PD GE
Sbjct: 383 VGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGE 442
Query: 494 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLL 552
A + L D +LA ++ + R+++ Y P+SV F LP++ TGK+ K LL
Sbjct: 443 QVKAVIQLVEGIRGSD--ELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLL 500
Query: 553 R 553
R
Sbjct: 501 R 501
|
Length = 501 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 9e-25
Identities = 135/540 (25%), Positives = 209/540 (38%), Gaps = 85/540 (15%)
Query: 29 AATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQF 88
A P R +++ ++ + R A L++ + G V V+ N A F
Sbjct: 44 TAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF 103
Query: 89 GAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEF---FSLAEEALKMMEANSEGK 145
+ GA + I+ + +A L + V+ D EF + A++A+ +++ +
Sbjct: 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPAT--- 160
Query: 146 LKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSG 205
G E G P A P I L TSG
Sbjct: 161 --------AGAEESG---------------------GRPAVA--AP----GRIVL-LTSG 184
Query: 206 TTASPKGV-----VVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAAL 260
TT PKGV + S G ++ L+ + G+ +PMFHG G AL
Sbjct: 185 TTGKPKGVPRAPQLRSAVGVWVTILDRTR---LRTGSRISVAMPMFHGLGLGMLMLTIAL 241
Query: 261 CGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAG 319
GT + R A+A + H F A PVVL I P PL + V ++G
Sbjct: 242 GGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSG 301
Query: 320 APPPPSLLFA-MSQKGFRITHTYGLTE-----LTGPASVCAWKPEWDSLPFETQARLNAR 373
P+L M G + + YG TE L PA + ET + A
Sbjct: 302 DRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAP--------ETVGKPVAG 353
Query: 374 QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH 433
VR I R N+PV + G I + G Y +A +G
Sbjct: 354 CPVR---------ILDRNNRPVGP--RVTGRIFVGGELAGTRY---TDGGGKAVVDGMTS 399
Query: 434 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493
+GD+ + I R D+IISGGEN+ VE L HP V + AV+ PDER+G
Sbjct: 400 TGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGH 459
Query: 494 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALPKSATGKIQKHLL 552
AFV L P + +D A + + + ++ + P+ + + +++P++ TGK+ + L
Sbjct: 460 RLAAFVVLHPGSG-VD----AAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKEL 514
|
Length = 516 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 3e-24
Identities = 61/158 (38%), Positives = 84/158 (53%), Gaps = 8/158 (5%)
Query: 402 IGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGG 460
IGE+ ++G VMKGY K P+ + A+GW H+GD+A ++ I DR KD+I+ G
Sbjct: 408 IGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSG 467
Query: 461 ENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKF 520
N+ E+E V+ + P VLE A V PDE+ GE + K D AEDV
Sbjct: 468 FNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK------DPALTAEDVKAH 521
Query: 521 CRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLRAKAK 557
RA + Y P+ + F LPK+ GKI + LR AK
Sbjct: 522 ARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDAAK 559
|
Length = 560 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 7e-24
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 3/129 (2%)
Query: 430 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489
G++ +GD A + D Y I R+ DVI G + + EVE L HP V EAAVV +PDE
Sbjct: 463 GYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDE 522
Query: 490 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQ 548
GE+ AFVTLK + D +L +++ K R ++ P ++F LPK+ +GKI
Sbjct: 523 VKGEAIYAFVTLKDGVEPSD--ELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIM 580
Query: 549 KHLLRAKAK 557
+ +LR A
Sbjct: 581 RRILRKIAA 589
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 9e-24
Identities = 107/380 (28%), Positives = 160/380 (42%), Gaps = 46/380 (12%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGAL--IWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 259
++SG+ PKGV++SH ++S + ++ + V L +LP FH G + T L
Sbjct: 789 FSSGSEGEPKGVMLSHHN--ILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPL 846
Query: 260 LCG-TSICLRQVT-AKAVYTAIATHGVTHFCAAPVVLNAIA---NASPED-TILPLTNVV 313
L G + T A + +A H T P L P L L VV
Sbjct: 847 LEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRL--VV 904
Query: 314 NVNTAGAPP-PPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN 371
AGA P + A +K G RI YG TE + ASV P D L + + +
Sbjct: 905 ----AGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNL--P--DVLAADFKRQTG 956
Query: 372 ARQGVRTICLDG--LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP-KANE---E 425
+++G + L G + ++D T + +P G I++ G VMKGYL +P K E +
Sbjct: 957 SKEGSVGMPLPGVAVRIVDPETFEELPP--GEDGLILIGGPQVMKGYLGDPEKTAEVIKD 1014
Query: 426 AFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVE----KVLYLHPLVLEA 481
GW+ +GD D ++ I DR GGE + VE K L +V
Sbjct: 1015 IDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVF-- 1072
Query: 482 AVVARPDERWGESPCAFVTLKP-EADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-AL 539
AV A PDE+ GE T + +EL + + E + +P+ W P AL
Sbjct: 1073 AVTAVPDEKKGEKLVVLHTCGAEDVEELKR-AIKE-------SGLPNLWKPSRYFKVEAL 1124
Query: 540 PKSATGKIQKHLLRAKAKEM 559
P +GK+ L+ A +
Sbjct: 1125 PLLGSGKLDLKGLKELALAL 1144
|
Length = 1146 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-23
Identities = 104/432 (24%), Positives = 151/432 (34%), Gaps = 84/432 (19%)
Query: 179 LETGDPEFAWKP--PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEG 236
L + P+ P P+D L TSG+T PK VV++HR S + G
Sbjct: 152 LRSAPPDAPLHPARPDD---PALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPD 208
Query: 237 AVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTA---------IATHGVTHF 287
V L +P+ H G L + C +Q+ Y I + VT
Sbjct: 209 DVSLNWMPLDHVGGIVM-LHLRDVY--LGC-QQIHVPTDYILADPLRWLDLIDRYRVTIT 264
Query: 288 CAAPVVLNAIANASPEDT-----ILPLTNVVNVNTAGAPPPPS----LLFAMSQKGFR-- 336
A + +A + L ++N AG L ++ G
Sbjct: 265 WAPNFAFALLNDALERIEDRSWDLSSLRYIIN---AGEAVVAKTIRRFLELLAPYGLPAD 321
Query: 337 -ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDAR----- 390
I +G++E S + S F T GV L G A
Sbjct: 322 AIRPAFGMSET---CSGVTY-----SRGFRTGPDTG---GVLVDSLTGPLRFAAADHPEA 370
Query: 391 --------------------TNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-AN 429
+P +G + +RG V GY +NP+AN EAF +
Sbjct: 371 VTFVELGRPIPGVAIRIVDEDGALLPEG--EVGRLQVRGPTVTSGYYRNPEANAEAFTED 428
Query: 430 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE---AAVVAR 486
GWF +GDL H D + I R KD+II G N + E+E + P V AA R
Sbjct: 429 GWFRTGDLGFLH-DGRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAACAVR 487
Query: 487 PDERWGESPCAFVTLKPEADELDK-GKLAEDVSKFCRAKM---PSYWVPKSVVFAALPKS 542
+ F P D D+ L + K+ P+Y +P + PK+
Sbjct: 488 DAGSGTDELAVFFV--PRYDLDDRLAALLRAIRTHVARKIGIAPAYVIP--LAKEDFPKT 543
Query: 543 ATGKIQKHLLRA 554
+ GKIQ+ LR
Sbjct: 544 SLGKIQRAQLRK 555
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-23
Identities = 101/377 (26%), Positives = 141/377 (37%), Gaps = 74/377 (19%)
Query: 202 YTSGTTASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWT---------LPMFHGNG 250
YTSG+T PKGV VSHR +L+S+ G+ L L +
Sbjct: 100 YTSGSTGKPKGVEVSHRALVNFLLSMARRP--GLGASDRLLAVTTISFDISVLELL---- 153
Query: 251 WSYTWSLAALCGTS--ICLRQVT--AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI 306
L L G + I + + + IA +T A P + A
Sbjct: 154 ------LPLLSGATVVIASAETVRDPERLARLIADERITIMQATPATWRMLLAAGWR--- 204
Query: 307 LPLTNVVNVNTA---GAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLP 363
++ TA G P L + G + + YG TE T W
Sbjct: 205 -GRESL----TALCGGEALPRDLAERLLSTGAELWNMYGPTETT------IW-------- 245
Query: 364 FETQARLNARQGVRTIC--LDG--LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 419
T AR+ A G TI + + V+D QPVP GE+ + G V +GYL
Sbjct: 246 -STCARVTAADGPVTIGRPIANTQVYVLDED-LQPVPPG--VPGELYIGGDGVARGYLGR 301
Query: 420 PKANEEAFANG--------WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKV 471
P+ E F + +GDL PD +E R D + G I E+E
Sbjct: 302 PELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAA 361
Query: 472 LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP 531
L HP V +A VV R + + A+V K A D AE + RA +P+Y VP
Sbjct: 362 LRAHPGVADAVVVVREEGPGDQRLVAYVVPKAGA-APD----AEALRAALRATLPAYMVP 416
Query: 532 KS-VVFAALPKSATGKI 547
+ V LP + GK+
Sbjct: 417 AAFVQLDELPLTPNGKV 433
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-22
Identities = 105/386 (27%), Positives = 162/386 (41%), Gaps = 67/386 (17%)
Query: 202 YTSGTTASPKGVVVSHRGAYL-MSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSL-- 257
YTSGTT PKG V +H G + + + + + G LW M GW W +
Sbjct: 107 YTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKPGDRLLWITDM----GWMMGPWLVLG 162
Query: 258 AALCGTSICLRQVT-----AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP--LT 310
L G +I L + ++ + H VTH +P ++ A+ A + + L+
Sbjct: 163 GLLLGATIVLYEGAPDYPDPDRLWRIVERHKVTHLGLSPTLIRALR-AHGDAPVEGHDLS 221
Query: 311 NVVNVNTAGAP-PPPSLLFAMSQKGFR---ITHTYGLTELTG---------PASVCAWKP 357
++ + + G P P S L+ + G I + G TE++G P C++
Sbjct: 222 SLRVLGSTGEPWDPESWLWLFERVGGGRAPIINYSGGTEISGGILGNVPIRPIKPCSF-- 279
Query: 358 EWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV-M-KG 415
P G+ DV+D +PV +GE+V+R M +G
Sbjct: 280 -NGPSP-----------GM------DADVVDED-GRPVR---GEVGELVVRAPWPGMTRG 317
Query: 416 YLKNPKANEEA----FANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKV 471
+ ++P+ E F W H GD A+ D Y I R D I G+ + E+E V
Sbjct: 318 FWRDPERYLETYWSRFPGVWVH-GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESV 376
Query: 472 LYLHPLVLEAAVVARPDERWGESPCAFVTLKP--EADELDKGKLAEDVSKFCRAKMPSYW 529
L HP V EAA + PD GE+ FV LKP + +LA+ V + +
Sbjct: 377 LNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPGVTPSAALEAELADHVGD----ALGKPF 432
Query: 530 VPKSVVFA-ALPKSATGKIQKHLLRA 554
P+ V F LPK+ GKI + ++RA
Sbjct: 433 RPREVHFVSDLPKTRNGKIMRRVIRA 458
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 103/382 (26%), Positives = 145/382 (37%), Gaps = 75/382 (19%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 261
YTSG+T PKGV + HR A AL+ W +F + L
Sbjct: 112 YTSGSTGRPKGVAIEHRNA------AALLQ---------WAAAVFSAEELA-----GVLA 151
Query: 262 GTSICL---------------RQV---TAKAVYTAIATHGVTHFCAAPVVLNAIANASPE 303
TSIC R V A A+ A VT P +
Sbjct: 152 ATSICFDLSVFEIFVPLSTGGRVVLADNALALPDLPAKAEVTLINTVPSAARELLRHDA- 210
Query: 304 DTILPLTNVVNVNTAGAPPPPSL---LFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD 360
LP ++V VN AG P P L L+A+ Q R+ + YG +E T ++ +P
Sbjct: 211 ---LP-SSVRTVNLAGEPLPQELVQRLYALPQ-VERVYNLYGPSEDTTYSTYAEVEPGAS 265
Query: 361 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP 420
P + + V+D QPVP GE+ + G+ V +GYL P
Sbjct: 266 RTPSIGRPLAGTQ----------AYVLD-AHLQPVPV--GVPGELYIGGAGVARGYLGRP 312
Query: 421 KANEEAF-ANGW--------FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKV 471
+ E F N + + +GDL + D +E R+ D + G I E+E
Sbjct: 313 ELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEIEAA 372
Query: 472 LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP 531
L P V EA VVA D A++ P A ED+ ++P+Y VP
Sbjct: 373 LRSIPGVAEAVVVAIGDAAGDRQLVAYIVADPGAA-----IDIEDLRARLATRLPAYMVP 427
Query: 532 -KSVVFAALPKSATGKIQKHLL 552
+ V ALP + GKI + L
Sbjct: 428 SRFVRLDALPLTPNGKIDRKAL 449
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 100/367 (27%), Positives = 146/367 (39%), Gaps = 38/367 (10%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNG-ALIWGMNEG-AVFLWTLPMFHGNGWSYTWSLAA 259
YTSG+T PKGV V H GA L A + ++ V L+ F G + W+L
Sbjct: 3244 YTSGSTGKPKGVGVRH-GALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTL-- 3300
Query: 260 LCGTSICLR---QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVN 316
+CG + +R + ++ AI H ++ C P L A + L V
Sbjct: 3301 ICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGGADCASLDIYVFGG 3360
Query: 317 TAGAPPPPSLLFA-MSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQG 375
A P + + +G +T+ YG TE +V WK D++ A +
Sbjct: 3361 EAVPPAAFEQVKRKLKPRG--LTNGYGPTEAV--VTVTLWKCGGDAVCEAPYAPIGRPVA 3416
Query: 376 VRTI-CLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH- 433
R+I LDG PVP GE+ + G + +GY + P E F F
Sbjct: 3417 GRSIYVLDG-------QLNPVPVG--VAGELYIGGVGLARGYHQRPSLTAERFVADPFSG 3467
Query: 434 -------SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 486
+GDLA D IE R+ + G I E+E L HP V EA V+AR
Sbjct: 3468 SGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLAR 3527
Query: 487 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATG 545
G+ A+V +G E + A +P Y VP ++ AA+P G
Sbjct: 3528 DGAG-GKQLVAYVVPADP-----QGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNG 3581
Query: 546 KIQKHLL 552
K+ + L
Sbjct: 3582 KVDRKAL 3588
|
Length = 3956 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 3e-22
Identities = 101/347 (29%), Positives = 141/347 (40%), Gaps = 77/347 (22%)
Query: 191 PEDEWQSIALG---YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLW--TLPM 245
WQ L TSG+T PK V + + A+L S G L M A W +LP+
Sbjct: 128 HAVAWQPQRLATMTLTSGSTGLPKAAVHTAQ-AHLASAEGVLSL-MPFTAQDSWLLSLPL 185
Query: 246 FH--GNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE 303
FH G G + W L A G ++ +R + + A+A G TH P L + + +
Sbjct: 186 FHVSGQGIVWRW-LYA--GATLVVR--DKQPLEQALA--GCTHASLVPTQLWRLLD-NRS 237
Query: 304 DTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPAS-VCAWKPEWDSL 362
+ L L V+ GA P L Q+G R YGLTE+ AS VCA
Sbjct: 238 EP-LSLKAVL---LGGAAIPVELTEQAEQQGIRCWCGYGLTEM---ASTVCA-------- 282
Query: 363 PFETQARLNARQGV------RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY 416
R + GV R + L GEI +RG+ + GY
Sbjct: 283 -----KRADGLAGVGSPLPGREVKLVD-------------------GEIWLRGASLALGY 318
Query: 417 LKN----PKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 472
+ P N+E GWF + D + + I RL ++ SGGE I E+E+V+
Sbjct: 319 WRQGQLVPLVNDE----GWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVI 373
Query: 473 YLHPLVLEAAVVARPDERWGESPCAFV--TLKPEADELD---KGKLA 514
HPLV + VV D +G+ P A V + L + KLA
Sbjct: 374 NQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAEWLQDKLA 420
|
Length = 458 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 5e-22
Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 430 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489
G++ +GD A + D YI I R+ DVI G + + E+E L HP V EAAVV PD+
Sbjct: 475 GYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDD 534
Query: 490 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 548
G++ AFVTLK + D +L +++ K R ++ P + F LPK+ +GKI
Sbjct: 535 IKGQAIYAFVTLKDGYEPDD--ELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIM 592
Query: 549 KHLLRAKAK 557
+ LLR A
Sbjct: 593 RRLLRKIAA 601
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (248), Expect = 7e-22
Identities = 106/472 (22%), Positives = 165/472 (34%), Gaps = 67/472 (14%)
Query: 18 TALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIA 77
LT A P ++V G + T+ + R R A L L +G G TV+++A
Sbjct: 225 LRLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILA 284
Query: 78 PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 137
+ A AGA ++ A +A+IL + +++
Sbjct: 285 DRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVD------- 337
Query: 138 MEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQS 197
D AL E DP +
Sbjct: 338 ----------------------DVGLPGLALDDALSEIP----DTDPIPQALLGDA---- 367
Query: 198 IALG-YTSGTTASPKGVVVSHRGA--YLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT 254
+A YTSG+T PKGV + HR L G++ L L + +
Sbjct: 368 LAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF--GLDADDRVL-ALASLSFDASVFE 424
Query: 255 WSLAALCGTSICLR----QVTAKAVYTAIATHGVTHFCAAPVVLNAIA-NASPEDTILPL 309
A L G + L QV A+ + G+T P++L + A D I P
Sbjct: 425 IFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPC 484
Query: 310 TNVVNVNTAGAPPPPSL---LFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFET 366
+ + + G P +L L ++ R+ + YG TE A++ D+ F
Sbjct: 485 ERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTE----ATL-------DAPSFPI 533
Query: 367 QARLNARQGV-RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 425
A L +R + R + L ++D +P+P G GE+ + G + GYL P E
Sbjct: 534 SAELESRVPIGRPVANTQLYILDQG-LRPLP-LG-VPGELYIAGLGLALGYLNRPDLTAE 590
Query: 426 AF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 476
F A + +GDLA D +E R + G I E+E L P
Sbjct: 591 RFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642
|
Length = 642 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-21
Identities = 65/242 (26%), Positives = 95/242 (39%), Gaps = 45/242 (18%)
Query: 319 GAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT 378
GAP PSLL Q R+ TYG+TE + + KP+ F
Sbjct: 239 GAPAWPSLLEQARQLQLRLAPTYGMTETA--SQIATLKPD----DF-------------- 278
Query: 379 ICLDGLDVIDARTNQPVP-----ADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH 433
L G + + Q +P G I ++ + GY + G F
Sbjct: 279 --LAG----NNSSGQVLPHAQITIPANQTGNITIQAQSLALGYYPQILDS-----QGIFE 327
Query: 434 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493
+ DL Y+ I R II+GGEN+ EVE + LV + V+ PD WGE
Sbjct: 328 TDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGE 387
Query: 494 SPCAFVTLKPEADELD--KGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHL 551
A K + L+ K + + +S F K P +W+P LP++ GKI +
Sbjct: 388 VVTAIYVPKDPSISLEELKTAIKDQLSPF---KQPKHWIP----VPQLPRNPQGKINRQQ 440
Query: 552 LR 553
L+
Sbjct: 441 LQ 442
|
Length = 452 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 98.5 bits (245), Expect = 3e-21
Identities = 136/553 (24%), Positives = 206/553 (37%), Gaps = 89/553 (16%)
Query: 30 ATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFG 89
A + P +VV+ + T+ + RR R A AL +G P V +
Sbjct: 4561 ARMTPDAVAVVFDEEKLTYAELNRRANRLAHALIARGVG---------PEVLVGIAMERS 4611
Query: 90 APMAGAVLNSINIRLNATVVAFI-LSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKT 148
A M +V + + A A V +D E+ E MME + L T
Sbjct: 4612 AEM---------------MVGLLAVLKAGGAYVPLDPEY--PRERLAYMMEDSGAALLLT 4654
Query: 149 -PHL-----IVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA-LG 201
HL I G S + E ++E F DP P ++A +
Sbjct: 4655 QSHLLQRLPIPDGLASLALDRDE--------DWEGFPAH-DPAVRLHP-----DNLAYVI 4700
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIW-----GMN-EGAVFLWTLPMFHGNGWSYTW 255
YTSG+T PKGV VSH SL L + + V + F G+
Sbjct: 4701 YTSGSTGRPKGVAVSHG-----SLVNHLHATGERYELTPDDRVLQFMSFSFDGSHEGLYH 4755
Query: 256 SLAALCGTSICLRQVTA---KAVYTAIATHGVTHFCAAPVVLNAIANASPEDT-ILPLTN 311
L G S+ +R + + +Y I H VT PV L +A + D L
Sbjct: 4756 PLI--NGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDGEPPSLRV 4813
Query: 312 VVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLN 371
A A L + + K + + YG TE T W + +
Sbjct: 4814 YCFGGEAVAQASYDLAWR-ALKPVYLFNGYGPTETT------VTVLLWKARDGDACGAAY 4866
Query: 372 ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF---- 427
G + V+D + N P+P GE+ + G V +GYL+ P E F
Sbjct: 4867 MPIG-TPLGNRSGYVLDGQLN-PLPVGV--AGELYLGGEGVARGYLERPALTAERFVPDP 4922
Query: 428 --ANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483
A G + +GDLA D I+ R+ + G I E+E L HP V EA V
Sbjct: 4923 FGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEARLREHPAVREAVV 4982
Query: 484 VARPDERWGESPCAFVTLKPEA---DELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AAL 539
+A+ G+ +V + A + + +L +++ R ++P Y VP +VF A +
Sbjct: 4983 IAQEGAV-GKQLVGYVVPQDPALADADEAQAELRDELKAALRERLPEYMVPAHLVFLARM 5041
Query: 540 PKSATGKIQKHLL 552
P + GK+ + L
Sbjct: 5042 PLTPNGKLDRKAL 5054
|
Length = 5163 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 97.7 bits (243), Expect = 5e-21
Identities = 124/540 (22%), Positives = 200/540 (37%), Gaps = 71/540 (13%)
Query: 30 ATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFG 89
A P +VV+G +H ++ + R R A L +G V++ A + A
Sbjct: 2013 AARAPEAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLA 2072
Query: 90 APMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTP 149
AG ++ A +A++L + +A+++ + L E +L P
Sbjct: 2073 VLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQR---HLLE------------RLPLP 2117
Query: 150 HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY---TSGT 206
+AR ++ + ++ P + L Y TSG+
Sbjct: 2118 A----------------GVARLPLDRDAEW----ADYPDTAPAVQLAGENLAYVIYTSGS 2157
Query: 207 TASPKGVVVSHRGAYLMSLNGA-LIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAALCGTS 264
T PKGV VSH GA + A + ++ L + F G + L L G
Sbjct: 2158 TGLPKGVAVSH-GALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHPL--LNGAR 2214
Query: 265 ICLR---QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAP 321
+ +R + +Y + HGVT PV L +A + D P V P
Sbjct: 2215 VLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGRPPAVRVYCFGGEAVP 2274
Query: 322 PPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICL 381
L + + + + YG TE + WK + G R
Sbjct: 2275 AASLRLAWEALRPVYLFNGYGPTEAV--VTPLLWKCRPQDPCGAAYVPIGRALGNRRAY- 2331
Query: 382 DGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF------ANG--WFH 433
++DA N + GE+ + G + +GYL P E F A+G +
Sbjct: 2332 ----ILDADLN-LLAPGM--AGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYR 2384
Query: 434 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493
+GDLA D +E R+ + G I E+E L HP V EA VVA+ D G+
Sbjct: 2385 TGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQ-DGASGK 2443
Query: 494 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLL 552
A+V + +A E +L + A++P+Y VP V LP + GK+ + L
Sbjct: 2444 QLVAYV-VPDDAAEDLLAELRAWL----AARLPAYMVPAHWVVLERLPLNPNGKLDRKAL 2498
|
Length = 5163 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 1e-20
Identities = 116/545 (21%), Positives = 201/545 (36%), Gaps = 68/545 (12%)
Query: 26 INRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYE 85
I A HP R ++V+G + ++ + R+ R A L +G V + M
Sbjct: 518 IEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVV 577
Query: 86 AQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAE--EALKMMEANSE 143
AG ++ +A++L + +++ + L+ + +
Sbjct: 578 GLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPVPAGLRSLCLDEP 637
Query: 144 GKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 203
L + + + D L Y + YT
Sbjct: 638 ADLLCGYSGHNPEVALDPDNLAYVI---------------------------------YT 664
Query: 204 SGTTASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 261
SG+T PKGV +SH Y+ + L ++ ++ + + F +LA+
Sbjct: 665 SGSTGQPKGVAISHGALANYVCVIAERLQLAADD-SMLMVSTFAFDLGVTELFGALAS-- 721
Query: 262 GTSICL--RQVT--AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 317
G ++ L A+A +A GVT P L A+ AS P +V
Sbjct: 722 GATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVALPRPQRALVCGGE 781
Query: 318 AGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGV- 376
A + + A+ G R+ + YG TE T S + R +
Sbjct: 782 ALQVDLLARVRALG-PGARLINHYGPTETTVGVST---------YELSDEERDFGNVPIG 831
Query: 377 RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF------ANG 430
+ + GL ++D N PVP +GE+ + G+ + +GY + P E F A+G
Sbjct: 832 QPLANLGLYILDHYLN-PVP--VGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADG 888
Query: 431 --WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488
+ +GDLA D IE R+ + G I E+E L P V EA V+A+P
Sbjct: 889 GRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPG 948
Query: 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKI 547
+ G A++ AD + +++ R +P Y VP ++ +LP + GK+
Sbjct: 949 DA-GLQLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNGKL 1007
Query: 548 QKHLL 552
+ L
Sbjct: 1008 DRKAL 1012
|
Length = 3956 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 96.9 bits (241), Expect = 1e-20
Identities = 129/551 (23%), Positives = 192/551 (34%), Gaps = 87/551 (15%)
Query: 26 INRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYE 85
P ++ +G + + + RR R A AL + +G V V M
Sbjct: 517 FEEQVERTPEAPALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVV 576
Query: 86 AQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGK 145
A A+L A A V +D E+ AE M+E +
Sbjct: 577 ALL------AILK-----------------AGGAYVPLDPEY--PAERLAYMLEDSGVQL 611
Query: 146 LKTPHLIVIGDESCDSKQLE-YALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTS 204
L + + G + + ++ L R A E + +P P E+ I YTS
Sbjct: 612 LLSQSHL--GRKLPLAAGVQVLDLDRPAAWLEGY-SEENPGTELNP-ENLAYVI---YTS 664
Query: 205 GTTASPKGVVVSHRGAYLMSLNGALIW-----GMNEGAVFLWTLPM-FHGNGWSYTWSLA 258
G+T PKG HR +L+ L W G+ G L P F + W + W L
Sbjct: 665 GSTGKPKGAGNRHR-----ALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLM 719
Query: 259 ALCGTSICL----RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 314
+ G + + + I GV P +L A + L +V
Sbjct: 720 S--GARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVASCTSLRRIV- 776
Query: 315 VNTAGAPPPPSLLFAMSQKGF--RITHTYGLTELTGPASVCAWKPEW-DSLPFETQARLN 371
+G P + K + + YG TE + E DS+P
Sbjct: 777 --CSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIG------ 828
Query: 372 ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF---- 427
R I ++DA PVP +GE+ + G + +GY P E F
Sbjct: 829 -----RPIANLACYILDANLE-PVPV--GVLGELYLAGRGLARGYHGRPGLTAERFVPSP 880
Query: 428 -ANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484
G + +GDLA D IE R+ + G I E+E L HP V EAAV+
Sbjct: 881 FVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVL 940
Query: 485 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSA 543
A G+ +V L+ E G E + A +P Y VP + LP +
Sbjct: 941 AVD----GKQLVGYVVLESEG-----GDWREALKAHLAASLPEYMVPAQWLALERLPLTP 991
Query: 544 TGKIQKHLLRA 554
GK+ + L A
Sbjct: 992 NGKLDRKALPA 1002
|
Length = 5163 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 2e-20
Identities = 120/513 (23%), Positives = 199/513 (38%), Gaps = 49/513 (9%)
Query: 57 RFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHA 116
A+ L S+ G+ V VI+ N P Y + GA+ + L +
Sbjct: 53 GLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQIT 112
Query: 117 SSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYE 176
A +V A + A E P + V D + +++ E++L ++
Sbjct: 113 DPAAALV-------APGSKMASSAVPEALHSIPVIAV--DIAAVTRESEHSLDAASLAGN 163
Query: 177 KFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMS---LNGALIW-G 232
+ DP +A+ +TSGTT PK V++++R + + L W
Sbjct: 164 ADQGSEDP-------------LAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVT 210
Query: 233 MNEGAVFLWTLPMFH-GNGWSYTWSLAALCGTSICLRQVTAKAVYTAI-ATHGVTHFCAA 290
G LP H G W W L L +C+ I T+ V C
Sbjct: 211 WVVGETTYSPLPATHIGGLW---WILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLV 267
Query: 291 PVVLNA-IANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGP 349
P +L+ ++ + +P +V G+ + + + G R YGL+E TG
Sbjct: 268 PTLLSKLVSELKSANATVPSLRLVGY--GGSRAIAADVRFIEATGVRTAQVYGLSE-TGC 324
Query: 350 ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVP-----ADGKTIGE 404
++C LP + + + G G+DV A T+ P + G
Sbjct: 325 TALC--------LPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGT 376
Query: 405 IVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENIS 464
+ ++ M GY NP+ E +GW ++GDL + D + IK R ++II GG NI+
Sbjct: 377 LWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIA 436
Query: 465 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK 524
EV+++ V EAA PDE +G V E DE L ++ R +
Sbjct: 437 PDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRE 496
Query: 525 MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA 556
P ++V +P++ +GK+ + L A A
Sbjct: 497 SEPMARPSTIVIVTDIPRTQSGKVMRASLAAAA 529
|
Length = 540 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 1e-19
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 10/159 (6%)
Query: 402 IGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGE 461
IG + ++ GY+ E A+GW D+ + + +I I R K++I+ GG
Sbjct: 333 IGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGI 392
Query: 462 NISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFC 521
NI E+E VL+ HP V E V+ PD WGE P A + K A + + FC
Sbjct: 393 NIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAII--KGSAT-------KQQLKSFC 443
Query: 522 RAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKEM 559
++ S+ +PK F +P + +GKI + ++ +
Sbjct: 444 LQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQ 482
|
Length = 487 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 2e-19
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 430 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489
G + +GD A + D Y I R+ DV+ G + + E+E L HP V EAAVV RPD+
Sbjct: 483 GMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDD 542
Query: 490 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 548
G+ AFVTLK + D +L +++ + R ++ P + FA LPK+ +GKI
Sbjct: 543 IKGQGIYAFVTLKGGEEPSD--ELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIM 600
Query: 549 KHLLRAKAK 557
+ +LR A+
Sbjct: 601 RRILRKIAE 609
|
Length = 637 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 2e-19
Identities = 57/273 (20%), Positives = 99/273 (36%), Gaps = 28/273 (10%)
Query: 24 WFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAM 83
AA HP R ++++ + ++ + R R+A + +G G V+++ N P
Sbjct: 41 DVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEY 100
Query: 84 YEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSE 143
A G GAV+ +N + V+A L+ + +IV +E EEA
Sbjct: 101 LAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEA--------R 152
Query: 144 GKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALG-- 201
L P + + G + +
Sbjct: 153 ADLARPPRLWVAG------GDTLDDPEGYEDLAAAAAGAPTT-----NPASRSGVTAKDT 201
Query: 202 ----YTSGTTASPKGVVVSHRGAYLMSLNG-ALIWGMNEGAVFLWTLPMFHGNGWSYTWS 256
YTSGTT PK V+SH +L ++ G + + V LP++H G + WS
Sbjct: 202 AFYIYTSGTTGLPKAAVMSHM-RWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWS 260
Query: 257 LAALCGTSICL-RQVTAKAVYTAIATHGVTHFC 288
G ++ L R+ +A + + + T F
Sbjct: 261 SVLAAGATLALRRKFSASRFWDDVRRYRATAFQ 293
|
Length = 600 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-17
Identities = 63/220 (28%), Positives = 91/220 (41%), Gaps = 33/220 (15%)
Query: 317 TAGAPPPPSLL-FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQG 375
+ GAP P F G + YGLTE ++ S P +T G
Sbjct: 276 SGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTL--------SDPGDTTT---GHVG 324
Query: 376 VRTICLDG--LDVIDA--RTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NG 430
C + +DV + P GEI +RG V KGY KNP+ EAF +G
Sbjct: 325 PPLPCCEIKLVDVPEMGYFAKDDPPR-----GEICIRGPNVFKGYYKNPEKTAEAFDEDG 379
Query: 431 WFHSGDLAVKHPDNYIEIKDRLKDVI-ISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489
WFH+GD+ PD ++I DR K++ +S GE ++ ++E + PLV + V +
Sbjct: 380 WFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLK 439
Query: 490 RWGESPCAFV-----TLKPEADELDKGKLAEDVSKFCRAK 524
+ A V L+ A E G D + C K
Sbjct: 440 SF---LVAIVVPDEDVLEKWAAENGGGG--GDFEELCNNK 474
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 5e-17
Identities = 51/163 (31%), Positives = 73/163 (44%), Gaps = 17/163 (10%)
Query: 393 QPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-----ANG--WFHSGDLAVKHPDNY 445
QPVP GE+ + G + GYL P+ E F G + +GDLA PD
Sbjct: 316 QPVPIG--VPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGN 373
Query: 446 IEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEA 505
IE R+ + G I E+E+ L HP V EAAV+ R D + A+V +
Sbjct: 374 IEFLGRIDRQVKIRGFRIELGEIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGAL 433
Query: 506 DELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKI 547
D A ++ ++P+Y VP + V LP +A GK+
Sbjct: 434 D-------AAELRAHLAERLPAYMVPAAFVVLDELPLTANGKV 469
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 6e-17
Identities = 86/357 (24%), Positives = 137/357 (38%), Gaps = 55/357 (15%)
Query: 199 ALGYTSGTTASPKGVVVSHRGAYLMSLNGAL-----IWGMNEGAVFLWTLPMFHGNGWSY 253
A+ +TSG+T PKGVV +HR + + ++G+ EG L P F G
Sbjct: 89 AILFTSGSTGPPKGVVYTHR-----TFAAQIDALRSLYGIREGDRDLAAFPPFALFG--- 140
Query: 254 TWSLAALCGTSI-------CLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI 306
AL T++ + + AI G + +P +L +A E+
Sbjct: 141 ----PALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVA-RYCEENG 195
Query: 307 LPLTNVVNVNTAGAPPPPSLLFAMSQK---GFRITHTYGLTELTGPASVCAWKPEWDSLP 363
+ L ++ V +AGAP PP LL I YG TE AS+ E +
Sbjct: 196 IQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASI-----EGREVL 250
Query: 364 FETQARLNARQGVRTIC----LDGLDV---------IDARTNQPVPADGKTIGEIVMRGS 410
E+ A GV C + G+DV I + + G+ +GEI++ G
Sbjct: 251 AESAEPPEAGAGV---CVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGE-VGEIIVSGP 306
Query: 411 CVMKGYLKNPKANEEAFAN----GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSV 466
V + Y P+A + A + W GDL + R + + G + +V
Sbjct: 307 HVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTV 366
Query: 467 EVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA 523
VE+V HP V +A+V + ++P V P + K + +A
Sbjct: 367 PVEQVFNRHPGVRRSALVGV-GKPGTQAPVLVVEPMPPVLDRRKRLEGRLRATAKQA 422
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (207), Expect = 1e-16
Identities = 114/535 (21%), Positives = 171/535 (31%), Gaps = 83/535 (15%)
Query: 34 PTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMA 93
P ++ +G + ++ + RR R A L + +G V V M A
Sbjct: 3071 PDAVALAFGEQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKA 3130
Query: 94 GAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANS--EGKLKTPHL 151
G A V +D E+ EE L M +S + L HL
Sbjct: 3131 GG-----------------------AYVPLDPEY---PEERLAYMLEDSGAQLLLSQSHL 3164
Query: 152 IVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY---TSGTTA 208
L L+ GD +A P L Y TSG+T
Sbjct: 3165 ---------------RLPLAQGVQVLDLDRGDENYAEANPAIRTMPENLAYVIYTSGSTG 3209
Query: 209 SPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAALCGTSICL 267
PKGV + H +G+ G L F W L + G + L
Sbjct: 3210 KPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMS--GARVVL 3267
Query: 268 R-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSL 326
+ + + + E+ T++ + G P L
Sbjct: 3268 AGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPADL 3327
Query: 327 LFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD-SLPFETQARLNARQGVRTICLDGLD 385
+ + + YG TE T W + + R + LD
Sbjct: 3328 QQQVFAGL-PLYNLYGPTEAT------ITVTHWQCVEEGKDAVPIGRPIANRACYI--LD 3378
Query: 386 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF-------HSGDLA 438
+ PV A +GE+ + G + +GY P E F F +GDLA
Sbjct: 3379 --GSLEPVPVGA----LGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLA 3432
Query: 439 VKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF 498
D IE R+ + G I E+E L HP V EA V+A G A+
Sbjct: 3433 RYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAVD----GRQLVAY 3488
Query: 499 VTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLL 552
V + EA G L E + +A +P Y VP ++F +P + GK+ + L
Sbjct: 3489 VVPEDEA-----GDLREALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDRKAL 3538
|
Length = 5163 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 2e-16
Identities = 67/214 (31%), Positives = 98/214 (45%), Gaps = 34/214 (15%)
Query: 317 TAGAPPPPSLL-FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQG 375
T AP L F +S I YG++E +GP +V + + A G
Sbjct: 325 TGAAPISRETLEFFLSLN-IPIMELYGMSETSGPHTVSN------PQNYRLLSCGKALPG 377
Query: 376 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHS 434
T + + P ADG IGEI + G V GYL + EEA +GW HS
Sbjct: 378 CET-----------KIHNP-DADG--IGEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHS 423
Query: 435 GDLAVKHPDNYIEIKDRLKDVII-SGGENISSVEVEKVLYLH-PLVLEAAVVARPDERWG 492
GDL D ++ I R+K++II +GGEN+ V +E+ + P++ A +V D+R
Sbjct: 424 GDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIEEAVKKELPIISNAMLVG--DKR-- 479
Query: 493 ESPCAFVTLKPEADELDKG----KLAEDVSKFCR 522
+ +TLK E D + G L E+ +FCR
Sbjct: 480 KFLSMLLTLKCEVDP-ETGEPLDNLTEEAIEFCR 512
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 3e-16
Identities = 95/376 (25%), Positives = 153/376 (40%), Gaps = 81/376 (21%)
Query: 150 HLIVIGDESCDSKQLEYALARGAIEYEKFL---ETGDPEFAWKPPEDEWQSIALGYTSGT 206
L+ +G L G L A P+D A+ +TSG+
Sbjct: 139 RLVTVGG----------RLLWGGTTLATLLRDGAAAPFPMADLAPDDM---AAILFTSGS 185
Query: 207 TASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSL--AALCG 262
T +PKGVV +H A + +L +G+ G + L T P+F +L AL
Sbjct: 186 TGTPKGVVYTHGMFEAQIEALRED--YGIEPGEIDLPTFPLF---------ALFGPALGM 234
Query: 263 TSI-------CLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNV 315
TS+ V ++ AI +GVT+ +P +L + E + L ++ V
Sbjct: 235 TSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYG-EANGIKLPSLRRV 293
Query: 316 NTAGAPPPPSLLFAMSQ---KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 372
+AGAP P +++ I YG TE +S+ E + F T+A +
Sbjct: 294 ISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSI-----ESREILFATRAATDN 348
Query: 373 RQGVRTIC----LDGLDV-IDARTNQPVP--------ADGKTIGEIVMRGSCVMKGYLKN 419
G IC +DG++V I A ++ P+P A G+ IGEIV+ G V + Y
Sbjct: 349 GAG---ICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGE-IGEIVVAGPMVTRSYYNR 404
Query: 420 PKANEEA----FANGWFH-SGDLAVKHPDNYIEIKDRL------KDVIISGGENISSVEV 468
P+A A +H GDL Y++ + RL + + G + ++
Sbjct: 405 PEATRLAKIPDGQGDVWHRMGDLG------YLDAQGRLWFCGRKAHRVETAGGTLYTIPC 458
Query: 469 EKVLYLHPLVLEAAVV 484
E++ HP V +A+V
Sbjct: 459 ERIFNTHPGVKRSALV 474
|
Length = 552 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 1e-15
Identities = 125/553 (22%), Positives = 215/553 (38%), Gaps = 98/553 (17%)
Query: 26 INRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYE 85
I A +P + Y + T+ Q + R A+ + K + + + V P M
Sbjct: 6 IQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLV 65
Query: 86 AQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGK 145
A G+ +G ++ + + + I+ A +VI E S+ +++ ++ +
Sbjct: 66 AFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAEL-SIDAVGTQIITLSALEQ 124
Query: 146 LKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSG 205
+T V D +D + I YTSG
Sbjct: 125 AETSGGPVSFD------------------------------HAVKGDDNYYII---YTSG 151
Query: 206 TTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWSLAALC-- 261
+T +PKGV +SH L+S ++ + ++EG FL P +S+ S+ L
Sbjct: 152 STGNPKGVQISH--DNLVSFTNWMLADFPLSEGKQFLNQAP------FSFDLSVMDLYPC 203
Query: 262 ----GTSICL-RQVTA--KAVYTAIATHGVTHFCAAPVVLNAIANASP---EDTILPLTN 311
GT CL + +T K ++ + G+ + + P ++ + P ++ LT+
Sbjct: 204 LASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVD-MCLLDPNFNQENYPHLTH 262
Query: 312 ------VVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPE----WDS 361
+ V TA A LL + I +TYG TE T + E +
Sbjct: 263 FLFCGEELPVKTAKA-----LLERFPKA--TIYNTYGPTEATVAVTSVKITQEILDQYPR 315
Query: 362 LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPK 421
LP A+ + +D +P+P K GEIV+ G V KGYL NP+
Sbjct: 316 LPIGF-----AKPDMNLFIMD-------EEGEPLPEGEK--GEIVIVGPSVSKGYLNNPE 361
Query: 422 ANEEAF--ANGW--FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPL 477
EAF G + +GD A D + + RL I G I ++E L
Sbjct: 362 KTAEAFFSHEGQPAYRTGD-AGTITDGQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSY 420
Query: 478 VLEAAVVAR--PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV 535
+ A VV + D + E A + + E E + +L + + K + +P+Y +P+ +
Sbjct: 421 IESAVVVPKYNKDHKV-EYLIAAIVPETEDFEKEF-QLTKAIKKELKKSLPAYMIPRKFI 478
Query: 536 F-AALPKSATGKI 547
+ LP +A GKI
Sbjct: 479 YRDQLPLTANGKI 491
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-15
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 35/217 (16%)
Query: 307 LPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFET 366
L L + AP PP+L+ + G I YG+TE +++ + P +
Sbjct: 272 LGLDQARLAGSGAAPMPPALIAWYRKLGLPICEGYGMTENFAYSTL--------NYPGDR 323
Query: 367 QARLNARQGVRTICLDGLDV-IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 425
R G + G+++ I GEI++R +M GY K+P+ E
Sbjct: 324 ------RIGTVGKPIPGVELKIS------------EDGEILIRSPGLMSGYYKDPEKTAE 365
Query: 426 AF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVI-ISGGENISSVEVEKVLYLHPLVLEAAV 483
AF +GW H+GD D +++I R+K++ S G+ ++ +E +L +P V + V
Sbjct: 366 AFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCV 425
Query: 484 VARPDERWGES-PCAFVTLKPEADELDKGKLAEDVSK 519
V G P A V L AD L++ ++ E + +
Sbjct: 426 VGS-----GLPQPVALVVLSEAADPLEREEVEESLQQ 457
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 3e-15
Identities = 135/562 (24%), Positives = 216/562 (38%), Gaps = 84/562 (14%)
Query: 46 YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV--------- 96
T+ Q +R FASAL L +G G V + P + A GA+
Sbjct: 84 LTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFA 143
Query: 97 LNSINIRLN-ATVVAFILSHASS--AVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIV 153
+S+ +R++ AT + + A VI + L + A+ +E + PH+++
Sbjct: 144 SHSLALRIDDATPKLIVSADAGMRGGKVI---PYKPLLDAAI------AEAQHPPPHVLL 194
Query: 154 IGDESCDSKQL------EYALAR----GAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 203
+ D +L +YA R A ++LE+ +P + + YT
Sbjct: 195 V-DRGLAPMRLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSY-------------ILYT 240
Query: 204 SGTTASPKGVVVSHRG-AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCG 262
SGTT PKGV G A ++L+ I+G+ G V + G SY L G
Sbjct: 241 SGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAG 300
Query: 263 TSICLRQVT-----AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL----PLTNVV 313
+ L + ++ + +GV +AP AI +D L+++
Sbjct: 301 AATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAP---TAIRVLKKQDAAWLRKHDLSSLH 357
Query: 314 NVNTAGAP-PPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 372
+ AG P P+ + G + Y TE P V A P D P
Sbjct: 358 WLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWP--VLAIMPGLDLKP--------V 407
Query: 373 RQGVRTICLDG--LDVIDARTNQPVPADGKTIGEIVMRG-------SCVMKGYLKNPKAN 423
+ G + + G L V+D T +P + K G + + S V + K
Sbjct: 408 KLGSPGLPMYGYHLRVLDEATGRPCGPNEK--GVLTVVPPLPPGCLSTVWGDDARFLKTY 465
Query: 424 EEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483
F + S D ++ D Y I R DVI G + + E+E+ + HP V E AV
Sbjct: 466 WSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAV 525
Query: 484 VARPDERWGESPCAFVTLKPE---ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AAL 539
V DE G+ F LK D D + + ++ + P V F AAL
Sbjct: 526 VGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAAL 585
Query: 540 PKSATGKIQKHLLRAKAKEMGP 561
PK+ +GK+ + ++A A+ P
Sbjct: 586 PKTRSGKLLRRSIQALAEGRDP 607
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-14
Identities = 96/383 (25%), Positives = 141/383 (36%), Gaps = 45/383 (11%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEG-------AVFLWTLPMFHGNGWSYT 254
YTSG+T PKG H +L L E V +T F + W
Sbjct: 1725 YTSGSTGRPKGAGNRHG-----ALVNRLCA-TQEAYQLSAADVVLQFTSFAFDVSVWELF 1778
Query: 255 WSLAALCGTSICLRQVTA----KAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 310
W L + G + + A + + I VT P +L + + PL+
Sbjct: 1779 WPL--INGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVE-HPLS 1835
Query: 311 NVVNVNTAGAPPPPSLLFAMSQKGFR-ITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 369
V A +L + + + + YG TE V W L + R
Sbjct: 1836 LRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETA--VDVTHWTCRRKDL----EGR 1889
Query: 370 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN 429
+ G L ++DA N PVP GE+ + G + +GYL P E F
Sbjct: 1890 DSVPIGQPIANL-STYILDASLN-PVPI--GVAGELYLGGVGLARGYLNRPALTAERFVA 1945
Query: 430 GWF--------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEA 481
F +GDLA D IE R+ + G I E+E L V EA
Sbjct: 1946 DPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREA 2005
Query: 482 AVVARPDERWGESPCAF-VTLKPE--ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-A 537
V+A+ D G+ A+ V P D+ + L + +A +P Y VP +VF A
Sbjct: 2006 VVIAQ-DGANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLA 2064
Query: 538 ALPKSATGKI-QKHLLRAKAKEM 559
+P + GK+ +K L A E+
Sbjct: 2065 RMPLTPNGKLDRKALPAPDASEL 2087
|
Length = 3956 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 1e-14
Identities = 58/175 (33%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 394 PVPADGKTIGEIVMRGSCVMKGYLKNPKANE-----EAFANG--WFHSGDLAVKHPDNYI 446
PV G+ +G + + + +GYLKN A E + F G W+ +GDL + D
Sbjct: 295 PVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRW 354
Query: 447 EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV--VARPDERWGESPCAFVTLKPE 504
DRL D EN+S+ EV VL P V EA V V P G + CA +TL+
Sbjct: 355 YFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGVKVPGYD-GRAGCAAITLEES 413
Query: 505 -ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATG---KIQKHLLRAK 555
A E + K K R ++PSY VP + + AT K QK +LR +
Sbjct: 414 SAVETEFTKNLLA--KLARKRLPSYAVPLFLRLT--EEVATTGNHKQQKGVLRKE 464
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 1e-14
Identities = 89/402 (22%), Positives = 152/402 (37%), Gaps = 73/402 (18%)
Query: 202 YTSGTTASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 259
++SG+T PKGV+++H+ + ++ A + VFL +P+ H G
Sbjct: 113 FSSGSTGEPKGVILTHKNLLTNIEAIIEA--AEITSEDVFLSWMPLTHDMGLIGFHLTPT 170
Query: 260 LCGTSIC--------------LRQVTA-KAVYTAIATHGVTHFCAAPVVLNAIANASPED 304
G + L + + +A + G + L D
Sbjct: 171 ALGINQYLMPTRLFIRRPLLWLDKASQHRATILSSPNFGYKYL------LKHFKTEKIID 224
Query: 305 TILPLTNVVNVNTAGAPP-PPSL----LFAMSQKGFR---ITHTYGLTELTGPASVCAWK 356
L++V + GA P L L M+ G R + YGL E A++
Sbjct: 225 --WDLSSV-RLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAE----ATLAVSF 277
Query: 357 PEWDSLPFET---------------QARLNARQGVRTI----CLDGLDVIDARTNQPVPA 397
P+ PF+T + + + +DG ++ V
Sbjct: 278 PKPGE-PFKTVCLDRNHLKVGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVLP 336
Query: 398 DGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVI 456
D +TIG I ++G V GY NP+A +++ +GW +GDL + + I R KD+I
Sbjct: 337 D-RTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVITGRAKDII 394
Query: 457 ISGGENISSVEVEKVLYLHPLVLEAAVVA--RPDERWG-ESPCAFVTLKPEADELDK--G 511
I G+N ++E+V + V A DE+ E FV + D+
Sbjct: 395 IVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQSLDDFTPLAL 454
Query: 512 KLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLR 553
K+ V+K + +P + PK+ +GKIQ++ L
Sbjct: 455 KIKRHVNK-KMGLNIDHVIPVRSI----PKTTSGKIQRYKLA 491
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 2e-14
Identities = 57/204 (27%), Positives = 79/204 (38%), Gaps = 30/204 (14%)
Query: 357 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY 416
P+W S+P+ + Q V+D P D GE+ + G V GY
Sbjct: 295 PDWRSIPY---GKPLPNQKFY--------VLDEDGR-DCP-DW-VPGELYIGGVGVALGY 340
Query: 417 LKNPKANEEAFANG-----WFHSGDLAVKHPDNYIEIKDRLKD--VIISGGENISSVEVE 469
+P+ E F + +GDL PD IE R D V I G + E+E
Sbjct: 341 WGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGR-ADHQVKIR-GYRVELGEIE 398
Query: 470 KVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYW 529
L HP V A VV D ++ AFV + A A + +P+Y
Sbjct: 399 AALARHPGVQRAVVVVVGDGG-AKALAAFVVAEDGAAV-----DAAVLRAALAELLPAYM 452
Query: 530 VPKSVVF-AALPKSATGKIQKHLL 552
VP V ALP +A GK+ + L
Sbjct: 453 VPSRFVVLDALPLTANGKVDRKAL 476
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 4e-14
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 27/174 (15%)
Query: 337 ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVP 396
+ YGLTE GP ++ F + + G + + L + + P
Sbjct: 411 VVQGYGLTETLGPTTLG----------FPDEMCMLGTVGAPAVYNE-LRLEEVPEMGYDP 459
Query: 397 ADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVI 456
GEI +RG C+ GY KNP+ EE +GWFH+GD+ P+ ++I DR K++I
Sbjct: 460 LGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLI 519
Query: 457 -ISGGENISSVEVEKVLYLHPLV-------------LEAAVVARPD--ERWGES 494
+S GE ++ +E V +P+V L A VV + +W +
Sbjct: 520 KLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKD 573
|
Length = 660 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 6e-14
Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 36/216 (16%)
Query: 25 FINRAATLHPTRKSVVYGSKH--YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPA 82
++R A +P R+++VY + +T+ + A L L I G V + APNVP
Sbjct: 21 LLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPE 80
Query: 83 MYEAQFGAPMAGAVLNSINIRLNATVVAFILSHA-SSAVVIVDQEFFS--------LAEE 133
QF GA+L +IN + + + L+ + A++ D S LA E
Sbjct: 81 WVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPE 140
Query: 134 ALKMMEANSEGKLKT---PHL---IVIGDESCDSKQLEYALARGAIEYEKFLETG----D 183
L E G+L++ P L I +GDE G + +++ L G D
Sbjct: 141 -LATCEP---GQLQSARLPELRRVIFLGDEK----------HPGMLNFDELLALGRAVDD 186
Query: 184 PEFAWKPPE-DEWQSIALGYTSGTTASPKGVVVSHR 218
E A + D I + YTSGTT PKG ++HR
Sbjct: 187 AELAARQATLDPDDPINIQYTSGTTGFPKGATLTHR 222
|
Length = 559 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 8e-14
Identities = 98/411 (23%), Positives = 158/411 (38%), Gaps = 58/411 (14%)
Query: 174 EYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSL--NGALIW 231
E +K E F P + + + YTSGTT + K VV S+ G +L+ L I
Sbjct: 233 EIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSN-GPHLVGLKYYWRSII 291
Query: 232 GMNEGAVFL------WTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKA------VYTAI 279
+ V W FHG + + +L T + K ++ I
Sbjct: 292 EKDIPTVVFSHSSIGWVS--FHG----FLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTI 345
Query: 280 ATHGVTHFCAAPVVLNAIANASPEDTILP----LTNVVNVNTAGAPPPPSLLFAMSQK-G 334
H VTH P + + PE TI+ L+N+ + G S+ + K
Sbjct: 346 EKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLK 405
Query: 335 FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL----DVIDAR 390
+ + YG TE G + + ++P+ GV +I + D +
Sbjct: 406 IKSSRGYGQTE-IGITYLYCYGHI--NIPYNAT-------GVPSIFIKPSILSEDGKELN 455
Query: 391 TNQPVPADGKTIGEIV----MRGSCVMKGYLKNPKANEEAFAN--GWFHSGDLAVKHPDN 444
N+ IGE+ M S Y KN + ++ F+ G+++SGDL K +
Sbjct: 456 VNE--------IGEVAFKLPMPPSFATTFY-KNDEKFKQLFSKFPGYYNSGDLGFKDENG 506
Query: 445 YIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPE 504
Y I R D I G + +E + HPLVLE + D P + LK +
Sbjct: 507 YYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQD 566
Query: 505 AD--ELDKGKLAEDVSKFCRAKMPSYWV-PKSVVFAALPKSATGKIQKHLL 552
+D KL +++ + S V K ++ LPK+ TGKI + ++
Sbjct: 567 QSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQII 617
|
Length = 647 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-13
Identities = 99/390 (25%), Positives = 166/390 (42%), Gaps = 54/390 (13%)
Query: 190 PPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA---LIWGMNEGAVFLWTLPMF 246
PP+ ++ G T+G+T +P+ ++S GA L +L G + W LP++
Sbjct: 148 PPDSGGPAVLQG-TAGSTGTPRTAILS-PGAVLSNLRGLNARVGLDAATDVGCSW-LPLY 204
Query: 247 HGNGWSYTWSLAALCGTSICLRQVTAKAVYTA--------IATHGVTHFCAAP-VVLNAI 297
H G ++ + AAL G + L TA ++A ++ T AAP N I
Sbjct: 205 HDMGLAFLLT-AALAGAPLWLAPTTA---FSASPFRWLSWLSDSRAT-LTAAPNFAYNLI 259
Query: 298 ANASPEDTILPLTNV-VNVNTAGAPPPPSLLF-----AMSQKGFR---ITHTYGLTE--- 345
+ + + L + V +N G P F AM+ GF +YGL E
Sbjct: 260 GKYARRVSDVDLGALRVALN--GGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTC 317
Query: 346 -LTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGE 404
+T P + + + + AR +A G + G++V + + G+ IGE
Sbjct: 318 AVTVPVPGIGLRVDEVTTDDGSGARRHAVLGN---PIPGMEVRISPGDGAAGVAGREIGE 374
Query: 405 IVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENIS 464
I +RG+ +M GYL + + WF +GDL D + + R K++I G NI
Sbjct: 375 IEIRGASMMSGYLGQAPID----PDDWFPTGDLGY-LVDGGLVVCGRAKELITVAGRNIF 429
Query: 465 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELD--KGKLAEDVSKFCR 522
E+E+V V E AVVA P + + + + ++ + V+ C
Sbjct: 430 PTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDEAGARSEVVQRVASECG 489
Query: 523 AKMPSYWVPKSVVFAA---LPKSATGKIQK 549
VP VVF A LP++++GK+++
Sbjct: 490 V------VPSDVVFVAPGSLPRTSSGKLRR 513
|
Length = 525 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 3e-12
Identities = 91/343 (26%), Positives = 124/343 (36%), Gaps = 87/343 (25%)
Query: 188 WKPPEDEWQSIA-LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMF 246
W PPE +IA L YTSG+T P GV ++H L EG + LP F
Sbjct: 172 WVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFF 231
Query: 247 HGNGWSYTWSLAALCGTSICL--------------RQVTAKAVYTAIATHGVTHFCAAP- 291
H G T L AL G I R++ K T G F AAP
Sbjct: 232 HDMGL-ITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTG----GT--FSAAPN 284
Query: 292 -VVLNAIANASPED--TILPLTNVVNVNTAGAPPPPSLL--F--AMSQKGFR---ITHTY 341
+A A P+D L L+NV + P P+ + F A + G I +Y
Sbjct: 285 FAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSY 344
Query: 342 GLTELTGPASVCAWKPEWDSLPFETQAR--------LNARQGVRT--------------- 378
G+ E T S + P + + LNA + V
Sbjct: 345 GMAEATLFVS---------TTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGK 395
Query: 379 ICLDGLDVI-DARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN-------- 429
+ + VI D T +P DG+ IGEI + G+ + GY P+ F N
Sbjct: 396 VGVSEWAVIVDPETASELP-DGQ-IGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSE 453
Query: 430 ----------GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGEN 462
W +GD V D + I R+KD++I G N
Sbjct: 454 SHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRN 495
|
Length = 631 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 4e-12
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 32/185 (17%)
Query: 45 HYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRL 104
T+ Q Y CR+ A A KL + +V ++ N P + A GA AG + I
Sbjct: 8 TLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTN 67
Query: 105 NATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHL--IVIGDESCDSK 162
+ ++ + + +++VD K ++ + + PHL I+ E K
Sbjct: 68 SPEACQYVAETSEANILVVDNA---------KQLQKILAIQDQLPHLKAIIQYREPLKEK 118
Query: 163 QLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI----------ALGYTSGTTASPKG 212
+ +++F+E G P+++ +I L YTSGTT PKG
Sbjct: 119 EPNL------YSWKEFMELGR-----SIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKG 167
Query: 213 VVVSH 217
V++SH
Sbjct: 168 VMLSH 172
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 6e-12
Identities = 61/242 (25%), Positives = 89/242 (36%), Gaps = 54/242 (22%)
Query: 319 GAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT 378
G P P +L A + G + TYG++E +G C +
Sbjct: 160 GGPAPAPVLDAAAAAGINVVRTYGMSETSGG---CVY----------------------- 193
Query: 379 ICLDGLDVIDARTNQPVPADGKTI----GEIVMRGSCVMKGYLKNPKANEEAFAN-GWFH 433
DG VP DG + G I + G + KGY +NP + + FA GWF
Sbjct: 194 ---DG-----------VPLDGVRVRVEDGRIALGGPTLAKGY-RNP-VDPDPFAEPGWFR 237
Query: 434 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493
+ DL D + + R D I +GG + VE L HP V + AV PD+R G+
Sbjct: 238 TDDLGALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQ 296
Query: 494 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALPKSATGKIQKHLL 552
A V E + + P+ + V LP+ GK+ + L
Sbjct: 297 RVVAAVVGDGGPAP-----TLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRAL 351
Query: 553 RA 554
Sbjct: 352 VR 353
|
Length = 358 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 8e-12
Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 18/182 (9%)
Query: 383 GLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP 442
+++ + P+P + +G I +RG +M GY ++ ++ + A+GW +GDL
Sbjct: 395 EIEIRNE-AGMPLPE--RVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL- 450
Query: 443 DNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL--EAAVVARPDERWGESPCAFVT 500
D Y+ I R KD+II G NI ++E + P + +AA + E GE V
Sbjct: 451 DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQ 509
Query: 501 LKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA---ALPKSATGKIQKHLLRAKAK 557
+ +DE +G+L ++ R++ + V +V +LP++++GK L RAKAK
Sbjct: 510 CR-ISDEERRGQLIHALAALVRSE---FGVEAAVELVPPHSLPRTSSGK----LSRAKAK 561
Query: 558 EM 559
+
Sbjct: 562 KR 563
|
Length = 579 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 430 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489
G++ SGD + D Y + R+ DVI G I + EVE L HP EAAVV E
Sbjct: 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHE 572
Query: 490 RWGESPCAFVTL---KPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATG 545
G+ AFVTL P ++EL K + R ++ ++ P + +A LPK+ +G
Sbjct: 573 VKGQGIYAFVTLVEGVPYSEELRKSLILT-----VRNQIGAFAAPDKIHWAPGLPKTRSG 627
Query: 546 KIQKHLLRAKA 556
KI + +LR A
Sbjct: 628 KIMRRILRKIA 638
|
Length = 666 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 6e-11
Identities = 109/405 (26%), Positives = 154/405 (38%), Gaps = 85/405 (20%)
Query: 184 PEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG---MNEGAVFL 240
P + + + ++ L +TSG+ +PKGVV+SHR + N A + +
Sbjct: 783 PLVYFCNRDPDDPAVIL-FTSGSEGTPKGVVLSHRN---LLANRAQVAARIDFSPEDKVF 838
Query: 241 WTLPMFHGNGWSYTWSLAALCGTSICLR------QVTAKAVYTAIAT--HGVTHFCAAPV 292
LP+FH G + L L G + L ++ + +Y AT G F
Sbjct: 839 NALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTF----- 893
Query: 293 VLNAIAN-ASPEDTILPLTNVVNVNTAGAPP--PPSLLFAMSQKGFRITHTYGLTELTGP 349
LN A A P D L V AGA + M + G RI YG+TE T P
Sbjct: 894 -LNGYARYAHPYD-FRSLRYVF----AGAEKVKEETRQTWMEKFGIRILEGYGVTE-TAP 946
Query: 350 ASVCAWKPEWDSLP----FETQARLNARQGVRTICLDGLDVIDARTNQPVPA--DGKTIG 403
+ P T RL L I+ R +PVP +G G
Sbjct: 947 VIAL-------NTPMHNKAGTVGRL-------------LPGIEYRL-EPVPGIDEG---G 982
Query: 404 EIVMRGSCVMKGYLK--NPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGE 461
+ +RG VM GYL+ NP E A+GW+ +GD+ + +I IK R K GE
Sbjct: 983 RLFVRGPNVMLGYLRAENPGVLEPP-ADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGE 1041
Query: 462 NISSVEVEKVL------YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAE 515
IS VE++ LH A V+ PD R GE +T +A
Sbjct: 1042 MISLAAVEELAAELWPDALH------AAVSIPDARKGER-IILLTTASDAT-------RA 1087
Query: 516 DVSKFCRAK-MPSYWVPKSV-VFAALPKSATGKIQKHLLRAKAKE 558
+A VP + +P TGKI + A+E
Sbjct: 1088 AFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEE 1132
|
Length = 1140 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-10
Identities = 57/224 (25%), Positives = 90/224 (40%), Gaps = 31/224 (13%)
Query: 336 RITHTYGLTELTGPASVCAWKPE----WDSLPFETQARLNARQGVRTICLDGLDVIDART 391
I +TYG TE T + E + LP A+ +I
Sbjct: 288 TIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGY-----AKPDSPL-------LIIDEE 335
Query: 392 NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF--ANGW--FHSGDLAVKHPDNYIE 447
+P + GEIV+ G V KGYL NP+ EAF +G +H+GD D +
Sbjct: 336 GTKLPDGEQ--GEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLF 392
Query: 448 IKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPE--A 505
+ R+ I G I E+E+ L V A VV + + A+V K E
Sbjct: 393 YQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFE 452
Query: 506 DELDKGK-LAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKI 547
E + K + +++ + + Y +P+ ++ +LP + GKI
Sbjct: 453 REFELTKAIKKELKER----LMEYMIPRKFIYRDSLPLTPNGKI 492
|
Length = 503 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-10
Identities = 108/545 (19%), Positives = 183/545 (33%), Gaps = 87/545 (15%)
Query: 46 YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 105
+W + + R A+AL L + G V+ PNVP A GA+ +S +
Sbjct: 87 ISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPDFG 146
Query: 106 ATVVAFILSHASSAVVIVDQ------EFFSLAEEALKMMEANSEGKLKTPHLIVIGDESC 159
V V+ + E+ ++++ L + +V+
Sbjct: 147 VEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKG-----LPSLEAVVVVPYLS 201
Query: 160 DSKQLEYALARGAIEYEKFLETGDPEFAWKP-PEDEWQSIALGYTSGTTASPKGVVVSHR 218
Q ++ P D I Y+SGTT PK +V
Sbjct: 202 SDAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWIL--YSSGTTGLPKCIVHGAG 259
Query: 219 GAYLMSL-NGALIWGMNEGAVFLWTLPMFHGNGW-SYTWSLAAL-CGTSICLRQ-----V 270
G L L L + G + + GW + W ++ L G ++ L
Sbjct: 260 GTLLQHLKEHGLHCDLRPGDRLFY----YTTTGWMMWNWLVSGLLSGATLVLYDGSPLYP 315
Query: 271 TAKAVYTAIATHGVTHFCAAPVVLNAIANAS-PEDTILPLTNVVNVNTAGAPPPPSLLFA 329
++ A G+T F + L+A+ A L+++ + + G+P PP
Sbjct: 316 DPDVLWRLAAKLGITIFGTSAKYLDALEKAGIEPGRTHDLSSLRTILSTGSPLPPE---- 371
Query: 330 MSQKGFRITHTY-----------GLTEL-TGPASVCAWKPEWDSLPFETQARLNARQGVR 377
GF +++ G T++ P + E Q R
Sbjct: 372 ----GFDWVYSHVKSDVWLASISGGTDICGCFVGGNPTLPVY---RGEIQCR-------- 416
Query: 378 TICLDGLDVIDA--RTNQPVPADGKTIGEIVMRGSCV-----MKGYLKNPKANE------ 424
L G+ V +A +PV + +GE+V C M Y N
Sbjct: 417 --GL-GMAV-EAFDEEGKPVIGE---VGELV----CTKPFPSMPLYFWNDPDGSRYRDAY 465
Query: 425 -EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483
+ F W H GD P + I R + GG I + E+ +V+ P V ++ V
Sbjct: 466 FDTFPGVWRH-GDWIKITPHGGVIIYGRSDATLNPGGVRIGTAEIYRVVEKIPEVEDSLV 524
Query: 484 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV-FAALPKS 542
V + + E FV L+ LD L + + RA + VP ++ +P +
Sbjct: 525 VGQEVDDGDERMPLFVKLREGV-TLDDA-LVKRIRSAIRAALSPRHVPAEIIAVPDIPYT 582
Query: 543 ATGKI 547
+GK
Sbjct: 583 LSGKK 587
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-10
Identities = 96/382 (25%), Positives = 147/382 (38%), Gaps = 53/382 (13%)
Query: 200 LGYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWSL 257
L YTSG+T PKGVVVSH G M A+I +GM L + N + + L
Sbjct: 2338 LIYTSGSTGKPKGVVVSH-GEIAMHCQ-AVIERFGMRADDC---ELHFYSINFDAASERL 2392
Query: 258 AA--LCGTSICLR---QVTAKAVYTAIATHGVTHFCAAPVVLNAIAN-ASPEDTILPLTN 311
LCG + LR Q A+ + I V+ P + +A + + LP+
Sbjct: 2393 LVPLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQWLAGQGEQLPVRM 2452
Query: 312 VVNVNTAGAPPPPSLLFAMSQKGFR---ITHTYGLTELTGPASVCAWKPEWDSLPFETQA 368
+ T G L + Q F + YG TE +P A
Sbjct: 2453 CI---TGGEALTGEHLQRIRQ-AFAPQLFFNAYGPTETV-------------VMPLACLA 2495
Query: 369 RLNARQGVRTICLDGLDVIDARTN-------QPVPADGKTIGEIVMRGSCVMKGYLKNPK 421
+G ++ + V+ AR VP GE+ + G+ + +GY P
Sbjct: 2496 PEQLEEGAASVPIG--RVVGARVAYILDADLALVPQGA--TGELYVGGAGLAQGYHDRPG 2551
Query: 422 ANEEAF------ANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLY 473
E F A+G + +GDL D +E R+ + G I E+E L
Sbjct: 2552 LTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLL 2611
Query: 474 LHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKS 533
HP V EA V+A + V+ D+ + L E + + ++P Y VP
Sbjct: 2612 EHPAVREAVVLALDTPSGKQLAGYLVSAVAGQDDEAQAALREALKAHLKQQLPDYMVPAH 2671
Query: 534 -VVFAALPKSATGKIQKHLLRA 554
++ +LP +A GK+ + L A
Sbjct: 2672 LILLDSLPLTANGKLDRRALPA 2693
|
Length = 4334 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 4e-10
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 403 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVI-ISGGE 461
GEI +RG+ + GY K EE +GWFH+GD+ P+ ++I DR K++ +S GE
Sbjct: 466 GEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGE 525
Query: 462 NISSVEVEKVLYLHPLV 478
++ +E PL+
Sbjct: 526 YVAVENLENTYSRCPLI 542
|
Length = 660 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 64/264 (24%), Positives = 106/264 (40%), Gaps = 11/264 (4%)
Query: 30 ATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFG 89
A P R ++++ T+ + RFA+ L + +G G V+V PN P + FG
Sbjct: 43 ARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFG 102
Query: 90 APMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEE-----ALKMMEANSEG 144
GAV ++ +++ L+ A + V++ + + E+ +L+ + S
Sbjct: 103 ILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLA 162
Query: 145 KLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTS 204
+ + +S + +L A GAI+ L PP AL YT
Sbjct: 163 DVLPAEPTLPLPDSLRAPRL---AAAGAIDLLPALRA-CTAPVPLPPPALDALAALNYTG 218
Query: 205 GTTASPKGVVVSHRG-AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCG- 262
GTT PKG + R Y + A+ E +VFL LP F G ++ G
Sbjct: 219 GTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGA 278
Query: 263 TSICLRQVTAKAVYTAIATHGVTH 286
T + L + A A A+ + VT
Sbjct: 279 TLVLLARWDAVAFMAAVERYRVTR 302
|
Length = 567 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 6e-10
Identities = 26/81 (32%), Positives = 39/81 (48%)
Query: 44 KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR 103
+ TW + R RR A+ L L + G V+++A N P A AGAV I
Sbjct: 4 QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63
Query: 104 LNATVVAFILSHASSAVVIVD 124
+ VA+IL+ + + VV V+
Sbjct: 64 SSPEEVAYILNDSGARVVFVE 84
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 6e-10
Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 25/205 (12%)
Query: 46 YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 105
YTW Q + RR A+AL L + G +++++ N A MAG V + L
Sbjct: 7 YTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLT 66
Query: 106 ATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE 165
A + ++L H+ + + V L +A G + I++ S +
Sbjct: 67 AETIRYVLEHSDAKALFVG---------KLDDWDAMKAGVPEGLPTIILFPYSTLKDHYK 117
Query: 166 YA--LARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLM 223
+ LA + P ++ +I YTSGTT PKGV++S GA+
Sbjct: 118 WDDLLAATEP----------LQGRPLPEPEDLATIV--YTSGTTGQPKGVMLSF-GAFAF 164
Query: 224 SLNGAL-IWGMNEGAVFLWTLPMFH 247
+ G + I G+ L LP+ H
Sbjct: 165 AAQGTIEIIGLTPNDRLLSYLPLAH 189
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 7e-10
Identities = 85/382 (22%), Positives = 130/382 (34%), Gaps = 92/382 (24%)
Query: 200 LGYTSGTTASPKGV------VVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY 253
L Y+SGTT PK + + AY +LN + + P+ H SY
Sbjct: 106 LQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNC------EQDETPIVACPVTH----SY 155
Query: 254 TWSLAALCGTSICLRQ------VTAKAVYTAIATHGVTH---FCAAPVVLNAIANASPED 304
+CG L + +T K A+ T A P++L+ + P
Sbjct: 156 ----GLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPGT 211
Query: 305 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL-- 362
V T+G P P + + + ++ + YG +E G S+C L
Sbjct: 212 FQFH-----AVMTSGTPLPEAWFYKLRERTTYMMQQYGCSE-AGCVSICPDMKSHLDLGN 265
Query: 363 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA 422
P ++A N P EIV+ K
Sbjct: 266 PL-PHVSVSAGSD---------------ENAP--------EEIVV-------------KM 288
Query: 423 NEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 482
++ + DL K + R+ DVI G N+ +EVE V+ P V EA
Sbjct: 289 GDKEI-----FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAV 343
Query: 483 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPK 541
V D GE A V E D + ++C + Y VP + +PK
Sbjct: 344 VYRGKDPVAGERVKAKVISHEEID-------PVQLREWCIQHLAPYQVPHEIESVTEIPK 396
Query: 542 SATGKIQKHLLRAKAKEMGPVK 563
+A GK+ + K E+G V
Sbjct: 397 NANGKVSR-----KLLELGEVT 413
|
Length = 414 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 65/205 (31%), Positives = 93/205 (45%), Gaps = 48/205 (23%)
Query: 391 TNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA---NG--WFHSGDLAVKHPDNY 445
+++P+P GEIV+ G V GY KN + +E + G WF++GD+ HPD
Sbjct: 496 SDKPMPR-----GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGC 550
Query: 446 IEIKDRLKDVI-ISGGENISSVEVEKVLYLHPLVLEAAVVARPD---------------E 489
+EI DR KD++ + GE +S +VE L + P V V A P E
Sbjct: 551 LEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCVALVVPSQQALE 610
Query: 490 RW----GESPCAFVTL--KPEA-----DELDKGKLAEDVSKF-CRAK---MPSYWVPKS- 533
+W G F L K EA L K A + KF AK +P W P+S
Sbjct: 611 KWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESG 670
Query: 534 VVFAALPKSATGKIQKHLLRAKAKE 558
+V AAL K+++ +R K K+
Sbjct: 671 LVTAAL------KLKREQIRKKFKD 689
|
Length = 696 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 52/201 (25%), Positives = 82/201 (40%), Gaps = 55/201 (27%)
Query: 402 IGEIVMRGSCVMKGYLKNPKANEEAFANGWF----------------------------- 432
+GEI +R + +GYL P+ N E F N WF
Sbjct: 621 VGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLY 680
Query: 433 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 492
+GDL PD +E R D + G I E++ L HPLV E + R D+
Sbjct: 681 RTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKD-- 738
Query: 493 ESPC--AFVTLKPEADELDK---------------------GKLAEDVSKFCRAKMPSYW 529
E P +++ + ++DEL++ KL +D+ ++ + K+PSY
Sbjct: 739 EEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYA 798
Query: 530 VPKSVV-FAALPKSATGKIQK 549
+P +V LP + GK+ K
Sbjct: 799 IPTVIVPLKKLPLNPNGKVDK 819
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-09
Identities = 94/386 (24%), Positives = 151/386 (39%), Gaps = 74/386 (19%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIW-----GMNEGAVFLWTLPM-FHGNGWSYTW 255
+TSG+T PKGV+V ++ L+W + V L P F + W + W
Sbjct: 605 FTSGSTGRPKGVMVGQT-----AIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFW 659
Query: 256 SLAALCGTSICLRQVTAK--------AVYTAIATHGVT--HFCAAPVVLNA-IANASPED 304
+ G L V A+ A+ A +GVT HF P +L A +A+ +PE
Sbjct: 660 PF--IAGA--KL--VMAEPEAHRDPLAMQQFFAEYGVTTTHF--VPSMLAAFVASLTPEG 711
Query: 305 TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHT-----YGLTELTGPASV-CAWKPE 358
++ V +G P L ++ ++T YG TE A+V +W P
Sbjct: 712 ARQSCASLRQVFCSGEALPADL----CREWQQLTGAPLHNLYGPTE----AAVDVSWYPA 763
Query: 359 WDSLPFETQARLNARQGVRTICL----DGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK 414
+ + R I GL ++DAR +PVP G++ + G + +
Sbjct: 764 F------GEELAAVRGSSVPIGYPVWNTGLRILDARM-RPVPPG--VAGDLYLTGIQLAQ 814
Query: 415 GYLKNPKANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVE 467
GYL P F F +GD+A D +E R D + G+ I E
Sbjct: 815 GYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGE 874
Query: 468 VEKVLYLHPLVLEAAVVAR----PDERWGESPCAFVTLKPEADE-LDKGKLAEDVSKFCR 522
+++ + P V +A A G++ L ++ LD L + R
Sbjct: 875 IDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQL----R 930
Query: 523 AKMPSYWVPKSVV-FAALPKSATGKI 547
++P + VP ++ LP SA GK+
Sbjct: 931 ERLPPHMVPVVLLQLDQLPLSANGKL 956
|
Length = 1296 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 15/185 (8%)
Query: 384 LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHS--------G 435
+ +++ T +P + K G +V+ G + G ++ +++ F ++
Sbjct: 422 VKLLNEVTGEPCGPNEK--GVLVIEGP-LPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTF 478
Query: 436 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 495
D ++ D Y I R DVI G + + E+E+ + HP V E AVV D G+
Sbjct: 479 DWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVA 538
Query: 496 CAFVTLK---PEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHL 551
AFV K AD + L +++ +++ + P V F +ALPK+ +GK+ +
Sbjct: 539 VAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRA 598
Query: 552 LRAKA 556
++A A
Sbjct: 599 IQAIA 603
|
Length = 629 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 4e-09
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 38/188 (20%)
Query: 34 PTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMA 93
P +V+ G+ T+ + RR A+AL + G V+V+ P A G +A
Sbjct: 1 PDATAVIDGAGTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLA 60
Query: 94 GAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIV 153
GA I+ A A IL+ A + V+ D + EEA L+V
Sbjct: 61 GAAYVPIDPDQPAERRAAILARAGARAVLTDPG-LAQPEEAP-------------DLLVV 106
Query: 154 IGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA-LGYTSGTTASPKG 212
D + E+ P P+D +A + +TSG+T PKG
Sbjct: 107 ADDAAAA-------------------ESPAPPPPRVDPDD----LAYVIFTSGSTGEPKG 143
Query: 213 VVVSHRGA 220
V+++HR A
Sbjct: 144 VMITHRAA 151
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 6e-09
Identities = 113/536 (21%), Positives = 187/536 (34%), Gaps = 71/536 (13%)
Query: 47 TWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNA 106
TW + R+ A+AL L + G VS PN+P A GA+ +S + A
Sbjct: 116 TWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGA 175
Query: 107 TVVAFILSHASSAVVI-VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE 165
V ++ VD ++ E + A +L T +V +
Sbjct: 176 RGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEA 235
Query: 166 YALARGAIEYEKFL---ETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYL 222
+ GA++ E F + + F P + + + ++SGTT PK +V S G +
Sbjct: 236 PKID-GALDLEDFTAAAQAAELVFEQLPFD---HPLWILFSSGTTGLPKCIVHSAGGTLV 291
Query: 223 MSLNG-ALIWGMNEGAVFLWTLPMFHGNGW-SYTWSLAALC-GTSICLRQ-----VTAKA 274
L L + G + + GW + W ++ L G ++ L
Sbjct: 292 QHLKEHGLHCDLGPGDRLFY----YTTTGWMMWNWLVSGLATGATLVLYDGSPGFPATNV 347
Query: 275 VYTAIATHGVTHFCAAPVVLNAI--ANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ 332
++ G T F + + A A P T L+ + V + G+P PP
Sbjct: 348 LWDIAERTGATLFGTSAKYVMACRKAGVHPART-HDLSALQCVASTGSPLPP-------- 398
Query: 333 KGFRITH-----TYGLTELTGPASVCA-------WKPEWDSLPFETQARLNARQGVRTIC 380
GFR + L ++G +C+ P E QA G+
Sbjct: 399 DGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIG---EIQAP-----GL---- 446
Query: 381 LDGLDVIDARTNQPVPADGKTIGEIVMRGS--CVMKGYLKNP------KANEEAFANGWF 432
G V + + P G+ GE+V + + +P A + + W
Sbjct: 447 --GTAV-QSWDPEGKPVTGEV-GELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWR 502
Query: 433 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 492
H GD P I I R + G + S E+ + V E+ + + G
Sbjct: 503 H-GDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGG 561
Query: 493 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV-FAALPKSATGKI 547
FV L P A LD L + + + RA + VP ++ +P + TGK
Sbjct: 562 YRVVLFVHLAPGA-TLDDA-LLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKR 615
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 6e-09
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 403 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISG-GE 461
GEI++RGS +M GYL E + W+ +GDL + Y+ I R K++II+ G
Sbjct: 305 GEILVRGS-LMLGYL-----GEPPATDDWWATGDLGHLDEEGYLYINGRKKNLIITSFGR 358
Query: 462 NISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFC 521
N+S VE L P + +A V G++ V L A + +L V +
Sbjct: 359 NVSPEWVESELQQAPAIAQAVVF-------GDAQPFLVALIVPAPNISDDQLEAAVQQ-I 410
Query: 522 RAKMPSYWVPKSVVFAALPKSAT 544
A++P Y K+ V P S
Sbjct: 411 NAQLPDYARIKTWVRLRQPFSTA 433
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 45 HYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRL 104
YT+ + R R A+ L L + G V+++ N P A F GAV IN L
Sbjct: 3 RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62
Query: 105 NATVVAFILSHASSAVVIVD 124
+A IL H+ + +++VD
Sbjct: 63 RGEELAHILDHSGARLIVVD 82
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 39 VVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98
+V G + T+ + R R A AL L + G V+V+AP AG V
Sbjct: 5 LVDGGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAV 64
Query: 99 SINIRLNATVVAFILSHASSAVVI 122
+N A +A+ILS + ++++
Sbjct: 65 PLNPSYPAAELAYILSDSQPSLLV 88
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 402 IGEIVMRGSCVMKGYLKNPKANEEAF------ANG--WFHSGDLAVKHPDNYIEIKDRLK 453
+GE+ + G+ V +GY+ +P AF A G + +GDLA + D +E R+
Sbjct: 4066 VGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRID 4125
Query: 454 DVIISGGENISSVEVEKVLYLHPLVLEAAV--VARPDERWGESPCAFVTLKPEADELDKG 511
+ G I E+E L+ V EAAV + G+ + L P L +G
Sbjct: 4126 HQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEGVN---GKHLVGY--LVPHQTVLAQG 4180
Query: 512 KLAEDVSKFCRAKMPSYWVPKS-VVFAALPKSATGKIQKHLLRA 554
L E + + RA++P Y VP + LP +A GK+ + L A
Sbjct: 4181 ALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPA 4224
|
Length = 4334 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 78/330 (23%), Positives = 124/330 (37%), Gaps = 48/330 (14%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWSLAA 259
+TSGT PKGV ++H A L++ A + + E V + LP FH G++
Sbjct: 190 FTSGTEKLPKGVPLTH--ANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPL 247
Query: 260 LCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN-ASPEDTILPLTNVVNVN 316
L G + + K + I VT + PV + I A +++ LP V +
Sbjct: 248 LSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVI- 306
Query: 317 TAGAPPPPSLLFAMSQKGF---RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNAR 373
G L+ + K F ++ YG TE C+ P T +N+
Sbjct: 307 --GGDAFKDSLYQEALKTFPHIQLRQGYGTTE-------CS--------PVITINTVNSP 349
Query: 374 QGVRT--ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG- 430
+ + + G+DV+ VP G ++ RG+ + GYL G
Sbjct: 350 KHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGE 409
Query: 431 -WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH----------PLVL 479
W+ +GDL + +K RL + G E +S +E +L PLV
Sbjct: 410 TWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLV- 468
Query: 480 EAAVVARPDERWGESPCAFVTLKPEADELD 509
V P E+ C F T E++
Sbjct: 469 ---VCGLPGEK--VRLCLFTTFPTSISEVN 493
|
Length = 539 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 43/187 (22%), Positives = 69/187 (36%), Gaps = 37/187 (19%)
Query: 34 PTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMA 93
P ++VYG + T+ + R R A L +G G V+++ P + A A
Sbjct: 1 PDAIALVYGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKA 60
Query: 94 GAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIV 153
GA ++ A +AF+L + + V++ D+ SLA A
Sbjct: 61 GAAYVPLDPAYPAERLAFMLEDSGARVLLTDE---SLAPLA------------------- 98
Query: 154 IGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA-LGYTSGTTASPKG 212
+ + A + D + +A + YTSG+T PKG
Sbjct: 99 ---RADQLPLVILEEELDAEDAGPPAPAVDAD-----------DLAYVMYTSGSTGRPKG 144
Query: 213 VVVSHRG 219
V V HRG
Sbjct: 145 VAVPHRG 151
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 21/79 (26%), Positives = 34/79 (43%)
Query: 46 YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 105
++ + R+A AL L + G V+++ N P A GAV IN
Sbjct: 4 LSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQR 63
Query: 106 ATVVAFILSHASSAVVIVD 124
V+A ++ + + VIVD
Sbjct: 64 GEVLAHCINVSDARAVIVD 82
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 56/171 (32%), Positives = 75/171 (43%), Gaps = 29/171 (16%)
Query: 399 GKTIGEIVMRGSCVMKGYLKNPKANE-----EAFANG--WFHSGDLAVKHPDNYIEIKDR 451
G IG I RG GY +P+A+E + F G WF++GDL + + DR
Sbjct: 404 GLLIGRITDRGP--FDGYT-DPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDR 460
Query: 452 LKDVIISGGENISSVEVEKVLYLHPLVLEAAV--VARP--DERWGESPCAFVTLKPEADE 507
L D GEN+++ EVE L P V EA V V P D R G A + L A+
Sbjct: 461 LGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAG---MAAIVLADGAE- 516
Query: 508 LDKGKLAEDVSKFCRAKMPSYWVPKSVVF----AALPKSATGKIQKHLLRA 554
D LA ++P+Y VP +F L + T K +K LR
Sbjct: 517 FDLAALAA----HLYERLPAYAVP---LFVRLVPELETTGTFKYRKVDLRK 560
|
Length = 600 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 381 LDGLDV-IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAV 439
L GL+V + Q +P G +G I +RG V GYL A+GW +GDL
Sbjct: 366 LPGLEVRVVDEDGQVLPPRG--VGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGY 423
Query: 440 KHPDNYIEIKDRLKDVIISGGENISSVEVEK 470
+ + + R+KDVII G NI ++E+
Sbjct: 424 LTEEGEVVVCGRVKDVIIMAGRNIYPTDIER 454
|
Length = 545 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 65/272 (23%), Positives = 100/272 (36%), Gaps = 71/272 (26%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALI---WGM--NEGAVFLWTLPMFHG-------- 248
+TSG+T PK V+ +HR ++ N A+I W E V + LP H
Sbjct: 171 FTSGSTGLPKAVINTHR---MLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFN 227
Query: 249 ----NGWSYTWS----LAALCGTSIC-LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIAN 299
NG + + L ++ LR+V+ T + P + +
Sbjct: 228 MVLYNGGTLYIDDGKPVPGLFEETLRNLREVSP------------TVYFNVPKGFEMLVD 275
Query: 300 ASPEDTILP---LTNVVNVNTAGAPPPPSLL-----FAMSQKGFRITHT--YGLTELTGP 349
A D L + + AGA P + A+ G RI T G TE
Sbjct: 276 ALERDAALRRRFFKRLRLLFYAGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPT 335
Query: 350 ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 409
A+ W R GV + G ++ + VP GK E+ ++G
Sbjct: 336 ATFVHWP--------------TDRSGVIGLPAPGTEL------KLVPNGGKL--EVRVKG 373
Query: 410 SCVMKGYLKNPKANEEAF-ANGWFHSGDLAVK 440
V GY ++P+ EAF G++ GD AV+
Sbjct: 374 PNVTPGYWRDPELTAEAFDEEGFYRIGD-AVR 404
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 391 TNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIK 449
T+ P P GEI++RG + KGY K + E +GWFH+GD+ + + I
Sbjct: 501 TDTPEPR-----GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRII 555
Query: 450 DRLK 453
R+K
Sbjct: 556 GRVK 559
|
Length = 700 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 403 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVI-ISGGE 461
GEI +RG + GY K +E +GW H+GD+ P+ ++I DR K++ +S GE
Sbjct: 469 GEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGE 528
Query: 462 NISSVEVEKV 471
++ +E +
Sbjct: 529 YVAVENIENI 538
|
Length = 666 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 23/82 (28%), Positives = 34/82 (41%)
Query: 46 YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 105
T+ + R A+AL++L + G V+ PN GAV+N I
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 106 ATVVAFILSHASSAVVIVDQEF 127
+ FIL A + V+ V EF
Sbjct: 62 ERELGFILRQARARVLFVPDEF 83
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 16/148 (10%)
Query: 415 GYLKNPKANE-----EAFANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVE 467
GY + E + F G +F++GDL V+ N++ DR D GEN+++ E
Sbjct: 362 GYAGPRELTEKKLLRDVFKKGDVYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGENVATTE 421
Query: 468 VEKVLYLHPLVLEAAV--VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKM 525
V +L + + E V V P G + A V LKP E D KL + V +F +
Sbjct: 422 VADILTMVDFIQEVNVYGVTVPGHE-GRAGMAAVILKPG-TEFDLEKLYQHVREF----L 475
Query: 526 PSYWVPKSV-VFAALPKSATGKIQKHLL 552
P+Y P+ + + ++ + T K QK L
Sbjct: 476 PAYARPRFLRIQDSMEVTGTFKQQKVRL 503
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 6e-07
Identities = 86/366 (23%), Positives = 140/366 (38%), Gaps = 38/366 (10%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWG---MNEGAVFLWTLPMF--HGNGWSYTWS 256
YTSGTT PK + HR A ++ A+ + L + M+ +G G S +
Sbjct: 152 YTSGTTGPPKAAI--HRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFP 209
Query: 257 LAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVN 316
LA I VT +A A G + P + ++ D+ L VV
Sbjct: 210 LATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSPDSFRSLRCVV--- 266
Query: 317 TAGAPPPPSLLFAMSQ--KGFRITHTYGLTELTG---PASVCAWKPEWDSLPFETQARLN 371
+AG L + + G I G TE+ V W+ T R+
Sbjct: 267 SAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLG-------TLGRVL 319
Query: 372 ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGW 431
+R + DG A G++ +RG + KGY P + GW
Sbjct: 320 PPYEIRVVAPDG-----------TTAGPGVEGDLWVRGPAIAKGYWNRPDSPVAN--EGW 366
Query: 432 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 491
+ D D ++ + R D + GG N+ EVE+++ V EAAVVA +
Sbjct: 367 LDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTG 426
Query: 492 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP-KSVVFAALPKSATGKIQKH 550
+ AF L + G + D+ + ++ ++ VP + V LP++ GK+ +
Sbjct: 427 ASTLQAF--LVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRG 484
Query: 551 LLRAKA 556
LR ++
Sbjct: 485 ALRKQS 490
|
Length = 705 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 7e-07
Identities = 87/378 (23%), Positives = 147/378 (38%), Gaps = 62/378 (16%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIW-----GMNEGAVFLWTLPM-FHGNGWSYTW 255
YTSG+T PKGV +H +L L W +++ V + P+ F + W W
Sbjct: 1280 YTSGSTGQPKGVGNTHA-----ALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFW 1334
Query: 256 SLAALCGTSICLRQVTA--------KAVYTAIATHGVT--HFCAAPVVLNAIANASPEDT 305
L C R V A + + + +GVT HF P +L + E
Sbjct: 1335 PLITGC------RLVLAGPGEHRDPQRIAELVQQYGVTTLHF--VPPLLQLFID---EPL 1383
Query: 306 ILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP 363
T++ + + G P L + Q+ ++ + YG TE +V W+ + +
Sbjct: 1384 AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETA--INVTHWQCQAE--- 1438
Query: 364 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 423
+ + R +C V+DA N +P GE+ + G+ + +GYL P
Sbjct: 1439 -DGERSPIGRPLGNVLC----RVLDAELN-LLPPG--VAGELCIGGAGLARGYLGRPALT 1490
Query: 424 EEAF--------ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 475
E F + +GD A + D +E RL + G + E++ L
Sbjct: 1491 AERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQ 1550
Query: 476 PLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV 535
P V +AAV+ R G + T + + AE + A++P Y VP ++
Sbjct: 1551 PGVAQAAVLVREGAA-GAQLVGYYTGEAGQEA-----EAERLKAALAAELPEYMVPAQLI 1604
Query: 536 -FAALPKSATGKIQKHLL 552
+P +GK+ + L
Sbjct: 1605 RLDQMPLGPSGKLDRRAL 1622
|
Length = 4334 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 58/234 (24%), Positives = 84/234 (35%), Gaps = 44/234 (18%)
Query: 46 YTWHQTYRRCRRFASAL-SKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG---AVLNSIN 101
T+ + +R + A AL + + G TV+++ N PA G G A LN+ N
Sbjct: 4 VTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNT-N 62
Query: 102 IRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDS 161
IR + + F A V++ D E EE L L+ + V
Sbjct: 63 IRSGSLLHCFRCCGAR--VLVADPELLEAVEEILP--------ALRAMGVRV-------- 104
Query: 162 KQLEYALARGAIE--YEKFLETGDPEFAWKPPED-----EWQSIALG-YTSGTTASPKGV 213
+ L+ + L D P +S AL YTSGTT PK
Sbjct: 105 ----FYLSHTSPPEGVISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAA 160
Query: 214 VVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL 267
+SH L + G+ V TLP++H S AL G C+
Sbjct: 161 RISHL-RVLQCSGMLSLCGVTADDVVYTTLPLYH--------SSGALLGIVGCI 205
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 528 YWVPKSVVFA-ALPKSATGKIQKHLLRAKAKE 558
Y VP+ V F LPK+ +GKI + LLRA A
Sbjct: 1 YAVPREVEFVDELPKTRSGKILRRLLRAIALG 32
|
This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 28/97 (28%), Positives = 40/97 (41%)
Query: 30 ATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFG 89
A HP R ++V G T+ + R R A+ L L G V+V P Y A
Sbjct: 1 AAKHPDRPALVVGGDTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILA 60
Query: 90 APMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQE 126
AGA ++ A +A IL A A ++ D +
Sbjct: 61 CLKAGAAYVPLDPSQPAERIAKILEAAGPAALVADPD 97
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 5e-06
Identities = 63/272 (23%), Positives = 110/272 (40%), Gaps = 18/272 (6%)
Query: 36 RKSVVYGSK-HYTWHQTYRRCR----RFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGA 90
R+ +V G Y W QTY+ + ++L + + + N P +
Sbjct: 66 RREIVDGKPGKYVW-QTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124
Query: 91 PMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPH 150
G + L A V FI+SH+ ++V V+++ S E K NS +KT
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKIS---ELFKTC-PNSTEYMKT-- 178
Query: 151 LIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASP 210
++ G S + K+ +++FL+ G+ + P + + + YTSGTT P
Sbjct: 179 VVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDP 238
Query: 211 KGVVVSHRG-----AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSI 265
KGV++S+ A ++ L + + V+L LP+ H G +I
Sbjct: 239 KGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQH-GAAI 297
Query: 266 CLRQVTAKAVYTAIATHGVTHFCAAPVVLNAI 297
+ K + + T FCA P VL+ +
Sbjct: 298 GFWRGDVKLLIEDLGELKPTIFCAVPRVLDRV 329
|
Length = 666 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-06
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 395 VPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVK 440
VP GK E+ ++G V GY + P+ EAF G++ SGD AV+
Sbjct: 406 VPVGGKL--EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGD-AVR 449
|
Length = 614 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 99/396 (25%), Positives = 150/396 (37%), Gaps = 74/396 (18%)
Query: 191 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 250
PED ++ L +TSG+ PKGVV SH+ I F+ LP+FH G
Sbjct: 364 PEDA--ALIL-FTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFG 420
Query: 251 WSYTWSLAALCGTSICLR------QVTAKAVYTAIAT--HGVTHFCAAPVVLNAIANASP 302
+ L G + L ++ + VY T G + F N A+P
Sbjct: 421 LTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLG-----NYARFANP 475
Query: 303 EDTILPLTNVVNVNTAGAPP--PPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWD 360
D L VV AGA + + G RI YG+TE A V +
Sbjct: 476 YD-FARLRYVV----AGAEKLQESTKQLWQDKFGLRILEGYGVTEC---APVVSI----- 522
Query: 361 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVP--ADGKTIGEIVMRGSCVMKGYLK 418
++P + A+ G L G +DAR VP G G + ++G +M GYL+
Sbjct: 523 NVP------MAAKPGTVGRILPG---MDARL-LSVPGIEQG---GRLQLKGPNIMNGYLR 569
Query: 419 -------------NPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISS 465
N + E GW+ +GD+ +++I+ R K GE +S
Sbjct: 570 VEKPGVLEVPTAENARGEMER---GWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSL 626
Query: 466 VEVEKV-LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK 524
VE++ L + P A + D GE+ F T D E + ++ R
Sbjct: 627 EMVEQLALGVSPDKQHAT-AIKSDASKGEALVLFTT--------DSELTREKLQQYAREH 677
Query: 525 -MPSYWVPKSV-VFAALPKSATGKIQKHLLRAKAKE 558
+P VP+ + LP +GK L++ E
Sbjct: 678 GVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE 713
|
Length = 718 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 392 NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKD 450
+QP P GEI +RG + KGY K+ E +GW H+GD+ + P ++I D
Sbjct: 453 DQPYPR-----GEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIID 507
Query: 451 RLKDVI-ISGGENISSVEVEKV 471
R K++ ++ GE I+ ++E V
Sbjct: 508 RKKNIFKLAQGEYIAPEKIENV 529
|
Length = 651 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-06
Identities = 72/295 (24%), Positives = 111/295 (37%), Gaps = 28/295 (9%)
Query: 20 LTPLWFINRAATLHPTRK----SVVYGSK--HYTW---HQTYRRCRRFASALSKLSIGLG 70
+P F + A +P + V SK Y W + Y R SA+ + G
Sbjct: 43 DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPG 102
Query: 71 TTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 130
+ N P A G + L A V FI++HA ++ V + S
Sbjct: 103 DRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISS 162
Query: 131 AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 190
L +N LKT ++ GD S + K+ L +E+F G + P
Sbjct: 163 ILSCLPKCSSN----LKT--IVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCEL-P 215
Query: 191 PEDEWQSIALGYTSGTTASPKGVVVSHRG--AYLMSLNGALIWG---MNEGAVFLWTLPM 245
P+ + + YTSGTT PKGV++++R A ++S + L E + LP+
Sbjct: 216 PKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPL 275
Query: 246 FHGNGWSYTWSLAALC---GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAI 297
H Y + C G SI Q + + + T FC P V + I
Sbjct: 276 AH----VYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRI 326
|
Length = 660 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 25/183 (13%)
Query: 386 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN----GWFHSGDLAVKH 441
++D ++ + V D + +GEI G + GY +NP+A+ + F W +GDL
Sbjct: 383 IVDPQSLE-VLGDNR-VGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLGFLR 440
Query: 442 PDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE----AAVVARPDERWGESPCA 497
D + + RLKD++I G N+ ++EK + V+ AA G A
Sbjct: 441 -DGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVNHQGEEGIGIAA 499
Query: 498 FVTLKPE----ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF---AALPKSATGKIQKH 550
++ + L K + + V++ C+ P V+ ALPK+++GK+Q+
Sbjct: 500 EISRSVQKILPPQALIK-SIRQAVAEACQE------APSVVLLLNPGALPKTSSGKLQRS 552
Query: 551 LLR 553
R
Sbjct: 553 ACR 555
|
Length = 4334 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 36/212 (16%)
Query: 46 YTWHQTYRRCRRFASALSKLSIGLGTTVSV-IAPNVPAM--YEAQFGAPMAGAVLNSINI 102
YT+ R A+ L L + G V+V + + A+ Y A AGAV +N
Sbjct: 29 YTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLA---TLRAGAVFLPLNT 85
Query: 103 RLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSK 162
+ + + A A+V+ D L + A PH+ + + S
Sbjct: 86 AYTLAELDYFIGDAEPALVVCDPA----NFAWLSKIAA----AAGAPHVETLDADGTGS- 136
Query: 163 QLEYALARGAIEYEKFLETGDPEFAWKP--PEDEWQSIALGYTSGTTASPKGVVVSHRGA 220
L A +F P +D A+ YTSGTT KG ++SH
Sbjct: 137 -----LLEAA-------AAAPDDFETVPRGADD---LAAILYTSGTTGRSKGAMLSHGN- 180
Query: 221 YLMSLNGAL--IWGMNEGAVFLWTLPMFHGNG 250
L+S L W V + LP+FH +G
Sbjct: 181 -LLSNALTLVDYWRFTPDDVLIHALPIFHTHG 211
|
Length = 504 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 115/484 (23%), Positives = 177/484 (36%), Gaps = 114/484 (23%)
Query: 47 TWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV---LNSINIR 103
TW Q R R + L +++ G G V+++AP F A AG + L + +
Sbjct: 70 TWTQLGVRLRAVGARLQQVA-GPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELP 128
Query: 104 LNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ 163
+A + L A VV+ + A EA++ N L+ P +I I D DS
Sbjct: 129 GHAERLDTALRDAEPTVVLTT----TAAAEAVEGFLRNLPR-LRRPRVIAI-DAIPDSAG 182
Query: 164 LEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA-LGYTSGTTASPKGVVVSHRGA-- 220
+ P E + ++ L YTSG+T P GV ++HR
Sbjct: 183 ESFV----------------------PVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGT 220
Query: 221 --YLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTA------ 272
M L+ L+ N V W LP++H G S A+ G L TA
Sbjct: 221 NLVQMILSIDLL-DRNTHGVS-W-LPLYHDMGLSMI-GFPAVYGGHSTLMSPTAFVRRPQ 276
Query: 273 ---KAVYTAIATHGVTHFCAAP---VVLNAIANASPEDTILPLTNVV------------- 313
KA+ + + G AAP A E + L+NVV
Sbjct: 277 RWIKAL-SEGSRTGRV-VTAAPNFAYEWAAQRGLPAEGDDIDLSNVVLIIGSEPVSIDAV 334
Query: 314 -NVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 372
N A AP + + + F+ +YG+ E T + A E + + + +L A
Sbjct: 335 TTFNKAFAP------YGLPRTAFK--PSYGIAEATLFVATIAPDAEPSVVYLD-REQLGA 385
Query: 373 RQGVRTICLDGLDVID-------ARTNQPVPADGKT--------IGEIVMRGSCVMKGYL 417
+ VR + D + + AR+ V D T +GEI + G + +GY
Sbjct: 386 GRAVR-VAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYW 444
Query: 418 KNPKANEEAFAN-------------------GWFHSGDLAVKHPDNYIEIKDRLKDVIIS 458
P+ E F W +GDL V + D + I R+ D+I+
Sbjct: 445 GRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGV-YLDGELYITGRIADLIVI 503
Query: 459 GGEN 462
G N
Sbjct: 504 DGRN 507
|
Length = 612 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 250
YTSGTT PK V+ H Y ++ +GM V LP++H G
Sbjct: 111 YTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDCLPLYHSAG 159
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 57/211 (27%)
Query: 46 YTW---HQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINI 102
Y W + R S L L + G + + A N P + V+ +
Sbjct: 3 YEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYD 62
Query: 103 RLNATVVAFILSHASSAVVIVDQ-EFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDS 161
L + +IL+ ++V D + +S EE ++ + N K P
Sbjct: 63 TLGEEAIEYILNETEISIVFCDAVKVYSF-EELEELGKKN-----KVPP----------- 105
Query: 162 KQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIAL-GYTSGTTASPKGVVVSHRGA 220
PP+ E +A YTSGTT +PKGV+++H
Sbjct: 106 ---------------------------TPPKPE--DLATIMYTSGTTGNPKGVMLTHGN- 135
Query: 221 YLMSLNGALIWGMNEGA----VFLWTLPMFH 247
+++ + + E V++ LP+ H
Sbjct: 136 -IVAGVAGINKIVPEFIGPTDVYISYLPLAH 165
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 109/525 (20%), Positives = 185/525 (35%), Gaps = 72/525 (13%)
Query: 78 PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL-- 135
+ +Y +AG V+ S+ +A +A L S A + Q+ AL
Sbjct: 5 VDAVIIY---LAIVLAGCVVVSVADSFSAKEIATRL-DISGAKGVFTQDVVLRGGRALPL 60
Query: 136 --KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPE- 192
K++EA + P G+ L + + FL + + E
Sbjct: 61 YSKVVEAAPAKAIVLP---AAGEPVA------VPLREQDLSWCDFLGVAAAQGSVGGNEY 111
Query: 193 -----DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFH 247
+ ++SGTT PK + +H + +G + G V W +
Sbjct: 112 SPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNL-- 169
Query: 248 GNGWSY-TWSL--AALCGTSICLRQ--VTAKAVYTAIATHGVTHFCAAPVVLNAIANASP 302
GW W L A L G ++ L + + GVT P ++ A +
Sbjct: 170 --GWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGA 227
Query: 303 EDTILP-LTNVVNVNTAG-APPPPSLLFAMSQKGFR--ITHTYGLTEL-TGPASVCAWKP 357
+ + + G A +L+ S +G+ + G TEL +G S +P
Sbjct: 228 FAMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQP 287
Query: 358 EWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY- 416
+ F T A G R + L+ V P P D +GE+ + M G
Sbjct: 288 QAPG-AFST-----ASLGTRFVLLNDNGV-------PYPDDQPCVGEVALA--PPMLGAS 332
Query: 417 --LKNPKANEEAFANGWFHS----------GDLAVKHPDNYIEIKDRLKDVIISGGENIS 464
L N +++ + G GD+ + P Y ++ R D + GG S
Sbjct: 333 DRLLN-ADHDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTS 391
Query: 465 SVEVEKVL-YLHPLVLEAAVVARPDERWG-ESPCAFVTLKPEADELDKGKLAEDVSKFCR 522
SVE+E+ + E A V G E F+ L E D+ + KF
Sbjct: 392 SVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQE 451
Query: 523 AKM----PSYWVPKSVVFAALPKSATGKIQKHLLRAKAKEMGPVK 563
A P + V + + LP++A+ K+ + +LR + K+ +
Sbjct: 452 AIQTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKKELSGR 496
|
Length = 499 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 21/87 (24%), Positives = 36/87 (41%)
Query: 45 HYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRL 104
T+ + R A L + + G V++ N P A + AGAV+ +N
Sbjct: 1 VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60
Query: 105 NATVVAFILSHASSAVVIVDQEFFSLA 131
+ IL+ + + V+IV E +A
Sbjct: 61 REAELEHILNDSGARVLIVGSELDDVA 87
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 21/79 (26%), Positives = 32/79 (40%)
Query: 46 YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 105
YT+ Q R A+AL +L + G V V P P A GAV +++
Sbjct: 7 YTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFG 66
Query: 106 ATVVAFILSHASSAVVIVD 124
V L + + V++ D
Sbjct: 67 PDAVEHRLRDSGARVLVTD 85
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 51/230 (22%), Positives = 79/230 (34%), Gaps = 46/230 (20%)
Query: 30 ATLHPTRKSVVYGSKH----YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYE 85
A + + +V G +TW + + R RR A L+ +G G V+V+A +
Sbjct: 10 ANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAP 69
Query: 86 AQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGK 145
G M GA L T++ AV D + M+ A
Sbjct: 70 TAQGLWMRGASL---------TMLHQPTPRTDLAVWAED------TLRVIGMIGAK---- 110
Query: 146 LKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIAL-GYTS 204
+V+G+ + + + L + P E +AL TS
Sbjct: 111 -----AVVVGEPFLAAAPVLEEKGIRVLTVADLLAADPID----PVETGEDDLALMQLTS 161
Query: 205 GTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA-------VFLWTLPMFH 247
G+T SPK V ++H Y A M A V + LP+FH
Sbjct: 162 GSTGSPKAVQITHGNLY------ANAEAMFVAAEFDVETDVMVSWLPLFH 205
|
Length = 545 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 149 PHLIVIGDESCDS-KQLEYALARGAIEYEKFLETGDPEFA--WKPPEDEWQSIA-LGYTS 204
P L++ + DS Q+E A A E ++T DP A W+ P + IA L YTS
Sbjct: 117 PRLLLTVADLRDSLLQMEELAAANAPELLC-VDTLDPALAEAWQEPALQPDDIAFLQYTS 175
Query: 205 GTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGA--VFLWTLPMFHGNG 250
G+TA PKGV VSH + N LI +G++ V + LP++H G
Sbjct: 176 GSTALPKGVQVSHGN---LVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMG 223
|
Length = 4334 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 15/121 (12%)
Query: 135 LKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE---FAWKPP 191
L++M+ G + +I + L + + + G P
Sbjct: 208 LRLMK---SGGMPNTTIIYLDSLPASVDTEGCRL----VAWTDVVAKGHSAGSHHPLNIP 260
Query: 192 EDEWQSIALGYTSGTTASPKGVVVSHRGAY--LMSLNG---ALIWGMNEGAVFLWTLPMF 246
E+ + YTSGTT PKGV+ +H +++L LI E + LP+
Sbjct: 261 ENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLA 320
Query: 247 H 247
H
Sbjct: 321 H 321
|
Length = 700 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 26/153 (16%)
Query: 415 GYLKNPKANE-----EAFANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVE 467
GY+ N A + F G F SGD+ V Y+ KDR D GEN+S+ E
Sbjct: 328 GYV-NEGATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTE 386
Query: 468 VEKVLYLHPLV-LEAAVV--ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK 524
VE + L ++ LE VV G + A + + PE ++D + + ++K
Sbjct: 387 VEGI--LSNVLGLEDVVVYGVEVPGVEGRAGMAAI-VDPE-RKVDLDRFSAVLAK----S 438
Query: 525 MPSYWVPKSVVFAAL----PKSATGKIQKHLLR 553
+P Y P F L K+ T K+QK L+
Sbjct: 439 LPPYARP---QFIRLLPEVDKTGTFKLQKTDLQ 468
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 435 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL-YLHPLVLEAAVVARPDERWG- 492
GD+ + Y R D + GG +SSVE+E+V VLE A + P G
Sbjct: 594 GDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGP 653
Query: 493 ESPCAFVTLKPEAD-ELDKGKLAEDVSKFCRAKM-PSYWVPKSVVFAALPKSATGKIQKH 550
E LK D +L + + + K+ P + V V+ + P++A+ K+ +
Sbjct: 654 EQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRR 713
Query: 551 LLRAK 555
+LR +
Sbjct: 714 VLRQQ 718
|
Length = 728 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 61/272 (22%), Positives = 95/272 (34%), Gaps = 71/272 (26%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGM------NEGAVFLWTLP---------MF 246
+TSG+T PK V+ + R +M N A+ + V L +P F
Sbjct: 227 FTSGSTGMPKAVINTQR---MMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANF 283
Query: 247 HGNGWS----YT---WSLAALCGTSI-CLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIA 298
+G W Y L + +I LR+++ T + P +A
Sbjct: 284 NGLLWGGGTLYIDDGKPLPGMFEETIRNLREISP------------TVYGNVPAGYAMLA 331
Query: 299 NASPEDTILP---LTNVVNVNTAGAPPPPSLL-----FAMSQKGFRI--THTYGLTELTG 348
A +D L N+ + GA L A+ G RI YG TE
Sbjct: 332 EAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAP 391
Query: 349 PASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMR 408
+ W E R G+ + L G+++ + P K E+ ++
Sbjct: 392 TTTGTHWDTE--------------RVGLIGLPLPGVEL------KLAPVGDKY--EVRVK 429
Query: 409 GSCVMKGYLKNPKANEEAF-ANGWFHSGDLAV 439
G V GY K+P+ AF G++ GD A
Sbjct: 430 GPNVTPGYHKDPELTAAAFDEEGFYRLGDAAR 461
|
Length = 624 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 54/210 (25%), Positives = 81/210 (38%), Gaps = 64/210 (30%)
Query: 43 SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVP----AMYE-AQFGAP----MA 93
S+ T+ + YR RFA+ L L + G V++ P +P AM A+ GA A
Sbjct: 76 SRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGAIHSVVFA 135
Query: 94 GAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF---------SLAEEALKMMEANSEG 144
G ++ R+N A S ++I + + +EAL+
Sbjct: 136 GFSAEALADRIN---------DAKSKLLITADGGYRGGKVIPLKEIVDEALE-------- 178
Query: 145 KLKTP---HLIVI---GDESCDSKQLEY------ALARGAIEYEKFLETGDPEFAWKPPE 192
K P +IV+ G E + + A A E E ++ DP F
Sbjct: 179 --KCPSVEKVIVVKRTGGEVPMVEGRDVWWHDLMAKASPYCEPEP-MDAEDPLF------ 229
Query: 193 DEWQSIALGYTSGTTASPKGVVVSHRGAYL 222
+ YTSG+T PKGVV + G YL
Sbjct: 230 -------ILYTSGSTGKPKGVVHTT-GGYL 251
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 199 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258
AL YTSGTT PKG +S R + S + + +P++HG T +
Sbjct: 91 ALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTCMPLYHG-----TAAFL 145
Query: 259 ALC-----GTSICL-RQVTAKAVYTAIATHGVTHF 287
LC G ++CL R+ +A + + T
Sbjct: 146 GLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATII 180
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 57 RFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHA 116
R A+ L L +G G V+V+ P VP ++ G GAV +L + + L A
Sbjct: 12 RAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGPKDIRYRLERA 71
Query: 117 SSAVVIVDQE 126
+ ++ +
Sbjct: 72 GARAIVTSAD 81
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 23/123 (18%)
Query: 104 LNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVI--GDESCDS 161
L V FI++HA A + F + + ++ SE + + LIV+ G +
Sbjct: 137 LGPDAVKFIVNHAEVAAI------FCVPQTLNTLLSCLSE--IPSVRLIVVVGGAD---- 184
Query: 162 KQLEYALARGAIE---YEKFLETG--DPEFAWKPPEDEWQSIA-LGYTSGTTASPKGVVV 215
+ L + +E Y K L G P+ ++PP+ E +A + YTSGTT +PKGVV+
Sbjct: 185 EPLPSLPSGTGVEIVTYSKLLAQGRSSPQ-PFRPPKPE--DVATICYTSGTTGTPKGVVL 241
Query: 216 SHR 218
+H
Sbjct: 242 THG 244
|
Length = 651 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 569 | |||
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 100.0 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.97 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.96 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.94 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.85 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.82 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.78 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.22 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.96 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.62 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.92 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.81 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.78 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.46 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 95.87 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 87.57 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 87.43 |
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-80 Score=622.88 Aligned_cols=519 Identities=38% Similarity=0.587 Sum_probs=443.3
Q ss_pred ccccccccccccCHHHHHHHhhhhCCCc-eeeeeCC---eeeeHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEcCCchh
Q 008342 9 DLPKISANYTALTPLWFINRAATLHPTR-KSVVYGS---KHYTWHQTYRRCRRFASALSKLS--IGLGTTVSVIAPNVPA 82 (569)
Q Consensus 9 ~~~~~~~~~~~~~l~~~l~~~a~~~p~~-~a~~~~~---~~~Ty~el~~~~~~la~~L~~~g--~~~g~~V~i~~~~~~~ 82 (569)
.+........+.+....+.+.+..++++ +.+++.. +.+||+|+.+++.++|..|.++| +++||+|++.+||+++
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~ 84 (537)
T KOG1176|consen 5 KLWKGPANNTPLTPITFLGRPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPE 84 (537)
T ss_pred ccccCcccCccccccccccccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHH
Confidence 3333344555556566666666666666 7777765 99999999999999999999876 8999999999999999
Q ss_pred HHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchh
Q 008342 83 MYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSK 162 (569)
Q Consensus 83 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 162 (569)
++.++|||+.+|+++.++||.+.+.++.+.++.++++++|++.+....+.++...+. ..++.+........
T Consensus 85 ~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---------~~i~~l~~~~~~~~ 155 (537)
T KOG1176|consen 85 FVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---------LKIIVLTGDEGVIS 155 (537)
T ss_pred HHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---------CceEEEecccCccc
Confidence 999999999999999999999999999999999999999999999888877655432 44444444311000
Q ss_pred hhHHhhhcchhh-HHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEE
Q 008342 163 QLEYALARGAIE-YEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLW 241 (569)
Q Consensus 163 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~ 241 (569)
. ........ +..+.....+.. ..+...+|+++++|||||||.||||.+||++++.........+.+...|+.++
T Consensus 156 -~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~ 230 (537)
T KOG1176|consen 156 -I--SDLVEDLDAFEDLMPEGLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLC 230 (537)
T ss_pred -c--ccccccccchhhccccCCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEE
Confidence 0 00001111 445544444433 45567899999999999999999999999999999887777788888999999
Q ss_pred cCCccchhhHHHHHHHHHhcceEEEe-ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCC
Q 008342 242 TLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGA 320 (569)
Q Consensus 242 ~~p~~~~~g~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~ 320 (569)
.+|++|.+|+...+.+.+.+++.++. ..+++..+++.|++|++|++.++|.++..|++.+.....+ +++++.+.+||+
T Consensus 231 ~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~-l~sl~~v~~gga 309 (537)
T KOG1176|consen 231 TLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYD-LSSLRSVLSGGA 309 (537)
T ss_pred echHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCccc-CCccEEEEecCC
Confidence 99999999999999977777766666 5679999999999999999999999999999998555555 999999999999
Q ss_pred CCCHHHHHHhhhc-C-CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCC
Q 008342 321 PPPPSLLFAMSQK-G-FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPAD 398 (569)
Q Consensus 321 ~l~~~~~~~~~~~-~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~ 398 (569)
+++++..+++.+. + ..+.+.||+||+++.++.+...+. ...+++|.+++++ ..++++++|+.++.+
T Consensus 310 ~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e----------~k~~svG~~~~g~--~~~v~~e~g~~l~~~ 377 (537)
T KOG1176|consen 310 PLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPE----------RKPGSVGRLLPGV--RVKVLDETGVSLGPN 377 (537)
T ss_pred CCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCcc----------CcccccCccccce--EEEeeCCCCCCCCCC
Confidence 9999999999854 6 899999999999988888764332 4569999999966 455555679999988
Q ss_pred CCceEEEEEecCcccccccCCcchhhhhhcC-CeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCC
Q 008342 399 GKTIGEIVMRGSCVMKGYLKNPKANEEAFAN-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPL 477 (569)
Q Consensus 399 ~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 477 (569)
+.||||++|+.++.||+++|+.|.+.|.+ ||++|||+|++|+||+++|.+|++|+||.+|++|+|.|||++|..||.
T Consensus 378 --~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~ 455 (537)
T KOG1176|consen 378 --QTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPD 455 (537)
T ss_pred --CceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCC
Confidence 78999999999999999999999999977 999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHH
Q 008342 478 VLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA 556 (569)
Q Consensus 478 v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (569)
|.||+|++.+++.+|+.+.|+|+.+++... .+++|.++|+++++.|++|..+.|++ ||+|++|||+|+.|++.+
T Consensus 456 V~eaaVvgipDe~~Ge~p~A~VV~k~g~~l-----te~di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~ 530 (537)
T KOG1176|consen 456 VLEAAVVGIPDEVWGETPAAFVVLKKGSTL-----TEKDIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIA 530 (537)
T ss_pred ccEEEEEcccccccCCcceEEEEecCCCcC-----CHHHHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHH
Confidence 999999999999999999999999986655 78999999999999999999999987 999999999999999999
Q ss_pred HhcCC
Q 008342 557 KEMGP 561 (569)
Q Consensus 557 ~~~~~ 561 (569)
.+...
T Consensus 531 ~~~~~ 535 (537)
T KOG1176|consen 531 KKLGS 535 (537)
T ss_pred Hhccc
Confidence 88654
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-76 Score=591.42 Aligned_cols=491 Identities=27% Similarity=0.383 Sum_probs=417.7
Q ss_pred HHHHhhh-hCCCceeeeeCC-----eeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 25 FINRAAT-LHPTRKSVVYGS-----KHYTWHQTYRRCRRFASALSK-LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 25 ~l~~~a~-~~p~~~a~~~~~-----~~~Ty~el~~~~~~la~~L~~-~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
.++++.+ ..+++.|+++.+ +++||+||.+.++++|+.|++ .|+ +||||+|++|+.+++++++|||+++|++.
T Consensus 14 ~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~ 92 (528)
T COG0365 14 ALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIP 92 (528)
T ss_pred hhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 5777765 357899999874 689999999999999999987 668 99999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHH--HHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhH
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEA--LKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEY 175 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (569)
+|+.+.++++.+..++++++++++|+.+......+.. ...... ....++++.... ..|
T Consensus 93 ~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~------~~~~~iv~~r~~--------------~~~ 152 (528)
T COG0365 93 AVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADA------VLSSVVVVPRLG--------------LWY 152 (528)
T ss_pred eecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHH------hhcceEEecccc--------------ccH
Confidence 9999999999999999999999999988754433221 010000 000033333321 677
Q ss_pred HhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhH-hHhCCCCCcEEEEcCCccchhhHHHH
Q 008342 176 EKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA-LIWGMNEGAVFLWTLPMFHGNGWSYT 254 (569)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~g~~~~ 254 (569)
.+++......+.... ...+|+++|+|||||||+||+|+++|.+++....... ..+.+.++|++.+..++.|++|.++.
T Consensus 153 ~~~~~~~~~~~~~~~-~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~ 231 (528)
T COG0365 153 DEAVEKASEKFEFEP-LPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYS 231 (528)
T ss_pred HHHhhccCCCCCccc-cCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHH
Confidence 777777665554433 7889999999999999999999999998766665544 46788899999999999999999886
Q ss_pred HHHH-HhcceEEEecc--C-ChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHh
Q 008342 255 WSLA-ALCGTSICLRQ--V-TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAM 330 (569)
Q Consensus 255 ~~~~-~~g~~~~~~~~--~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~ 330 (569)
+..+ +.|++++++.. + +++.++++|+++++|++++.|+.++.|.+.......+ +++||.+.+.|||++++..+++
T Consensus 232 v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~d-lssLr~~~SaGEPLnpe~~~w~ 310 (528)
T COG0365 232 VFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYD-LSSLRVLGSAGEPLNPEAFEWF 310 (528)
T ss_pred HHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCccccc-chhheeeeccCCCCCHHHHHHH
Confidence 5555 45666666632 3 3899999999999999999999999999987633444 9999999999999999999999
Q ss_pred hhc-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEec
Q 008342 331 SQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 409 (569)
Q Consensus 331 ~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~ 409 (569)
.+. |++|.+.||+||+|++.....+ ...+++.|.|.|+. +++++|++ |++++.+ + |+|+++.
T Consensus 311 ~~~~g~~i~d~~gqTEtg~~~~~~~~------------~~~~g~~g~p~pG~-~~~vvdd~-g~~~~~~--~-G~Lvi~~ 373 (528)
T COG0365 311 YSALGVWILDIYGQTETGMGFIAGRP------------PVKNGSSGLPLPGY-AVRRVDDE-GNPVPPG--V-GELVVRL 373 (528)
T ss_pred HHHhCCCEeccccccccCccccCCCC------------CcCCCCCCCCCCCc-eeEEECCC-CCcCCCC--c-eEEEEeC
Confidence 955 9999999999999955544321 22336669999999 69999999 9999988 6 9999998
Q ss_pred C--cccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeec
Q 008342 410 S--CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487 (569)
Q Consensus 410 ~--~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 487 (569)
+ .++++||++++...+.+...||.|||.+.+|+||+++|+||.||+|++.|.++.+.|||++|.+||.|.||+|++.+
T Consensus 374 ~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~p 453 (528)
T COG0365 374 PWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVP 453 (528)
T ss_pred CCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEecc
Confidence 7 88999999999998888777999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 488 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 488 ~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
++..|+.+.+||+++++.... ++.++|++++++.+.++..|..+.|++ ||||.+|||.|+.||+.+.+
T Consensus 454 d~~kg~~v~afVvL~~g~~~~---~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~~ 522 (528)
T COG0365 454 DPGKGQIVLAFVVLAAGVEPN---ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHK 522 (528)
T ss_pred CCCCCcEEEEEEEecCCCChH---HHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHhh
Confidence 999999999999999987442 589999999988888899999999887 99999999999999999885
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-77 Score=555.12 Aligned_cols=522 Identities=26% Similarity=0.364 Sum_probs=451.4
Q ss_pred ccccccCHHHHHHHhhhhCCCceeeeeC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhh
Q 008342 15 ANYTALTPLWFINRAATLHPTRKSVVYG--SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPM 92 (569)
Q Consensus 15 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 92 (569)
.+....|++++++..+++-||+.|+++. +.++||+|+.+.+.++|++|..+|+++||||++..||+.+|+..+|||.+
T Consensus 45 ipl~~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~ 124 (596)
T KOG1177|consen 45 IPLDSETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACAR 124 (596)
T ss_pred CCcccccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHH
Confidence 3455779999999999999999998875 46799999999999999999999999999999999999999999999999
Q ss_pred cCceEeeccccCCHHHHHHHHhcCCceEEEEcccc-----hHHHHHHHHHHhhhcCCCC------CcCeEEEecCCCcch
Q 008342 93 AGAVLNSINIRLNATVVAFILSHASSAVVIVDQEF-----FSLAEEALKMMEANSEGKL------KTPHLIVIGDESCDS 161 (569)
Q Consensus 93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~ 161 (569)
+|.+.+++||.+...+++..|+..+++++|+.+.+ ...+.+.+.++.+...+.+ +..+++..++..
T Consensus 125 AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~--- 201 (596)
T KOG1177|consen 125 AGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDH--- 201 (596)
T ss_pred hceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCC---
Confidence 99999999999999999999999999999997653 4556666666654433332 345566666332
Q ss_pred hhhHHhhhcchhhHHhhhhcCCCCCC----C-CCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCC
Q 008342 162 KQLEYALARGAIEYEKFLETGDPEFA----W-KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEG 236 (569)
Q Consensus 162 ~~~~~~~~~~~~~~~~~l~~~~~~~~----~-~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~ 236 (569)
...+...+++++........ + ....++++++.|.|||||||.||++.+||.++++++......+++.+.
T Consensus 202 ------~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~ 275 (596)
T KOG1177|consen 202 ------PLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEK 275 (596)
T ss_pred ------cCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcc
Confidence 34566777777766554321 1 122577999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCccchhhHHHHHHH-HHhcceEEEe-ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCccccee
Q 008342 237 AVFLWTLPMFHGNGWSYTWSL-AALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 314 (569)
Q Consensus 237 d~~~~~~p~~~~~g~~~~~~~-~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~ 314 (569)
+++++..|++|.+|.....++ +..|.+++++ +.|++...+++|+++++|.++++|.+|..|++.+.....+ ++++|.
T Consensus 276 ~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~-~s~lr~ 354 (596)
T KOG1177|consen 276 HRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVD-LSSLRK 354 (596)
T ss_pred eEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCc-hhhhhh
Confidence 999999999999996555554 4556666664 5699999999999999999999999999999999888888 999999
Q ss_pred eeecCCCCCHHHHHHhhh-cCC-eEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCC
Q 008342 315 VNTAGAPPPPSLLFAMSQ-KGF-RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTN 392 (569)
Q Consensus 315 ~~~~g~~l~~~~~~~~~~-~~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~ 392 (569)
.+.||+++++++.+.+.. .++ .+...||+||+++..+....+ ....+...++|+.+++. +..++|.+ |
T Consensus 355 ~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~--------D~~~~~~ksVG~~m~h~-Ea~iv~~~-g 424 (596)
T KOG1177|consen 355 GVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLG--------DPPEERIKSVGHLMDHY-EAAIVDKD-G 424 (596)
T ss_pred heeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCC--------CCHHHHHhhhhhccccc-ccccccCC-C
Confidence 999999999999999874 344 477889999999887775543 33445558899999999 69999955 9
Q ss_pred cccCCCCCceEEEEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHH
Q 008342 393 QPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKV 471 (569)
Q Consensus 393 ~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~ 471 (569)
..+|.+ +.|||+++|.+.|.|||++++.+.+.. .+.||+|||++.+|++|.+++.||++|+|+.+|++|+|.|||+.
T Consensus 425 ~~v~~~--~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~f 502 (596)
T KOG1177|consen 425 SEVPLG--TKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDF 502 (596)
T ss_pred CccccC--CCceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHH
Confidence 999999 679999999999999999888877766 57799999999999999999999999999999999999999999
Q ss_pred HhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHH
Q 008342 472 LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKH 550 (569)
Q Consensus 472 l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~ 550 (569)
|-+||.|.++.|+++++...|+.++|++.+..+.... .+.++|.++|+.++..|++|+.+.+++ +|+|.+|||+|-
T Consensus 503 L~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~---~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKF 579 (596)
T KOG1177|consen 503 LNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGK---TTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKF 579 (596)
T ss_pred HhhCCCeeeEEEEccCCCcccceEEEEEEeecccccc---ccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhH
Confidence 9999999999999999999999999999998876532 367899999999999999999999887 999999999999
Q ss_pred HHHHHHHhcCC
Q 008342 551 LLRAKAKEMGP 561 (569)
Q Consensus 551 ~l~~~~~~~~~ 561 (569)
+++++....-.
T Consensus 580 eir~~~k~~l~ 590 (596)
T KOG1177|consen 580 EIREMSKGHLG 590 (596)
T ss_pred HHHHHHHhhcc
Confidence 99999985543
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-75 Score=609.78 Aligned_cols=509 Identities=35% Similarity=0.504 Sum_probs=433.2
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCee--eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKH--YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMA 93 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~--~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 93 (569)
.+..+++.+++++++..+|+++|+.+.+.. +||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++
T Consensus 7 ~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~ 86 (534)
T COG0318 7 MTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRA 86 (534)
T ss_pred ccccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 456789999999999999999999998877 999999999999999999999999999999999999999999999999
Q ss_pred CceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchh
Q 008342 94 GAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAI 173 (569)
Q Consensus 94 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (569)
|++++|++|.+...++.++++.+++++++++.+..+.........+ ....+........... .
T Consensus 87 Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----------~ 149 (534)
T COG0318 87 GAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALP-------VVLVVLLVGDADDRLP----------I 149 (534)
T ss_pred CEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCC-------cceEEEeccccccccc----------c
Confidence 9999999999999999999999999999999884444443322211 1122222221111000 2
Q ss_pred hHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhC--CCCCcEEEEcCCccchhhH
Q 008342 174 EYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG--MNEGAVFLWTLPMFHGNGW 251 (569)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~--~~~~d~~~~~~p~~~~~g~ 251 (569)
.++++...............++++++++|||||||.||+|++||+++..+.......++ +++.|++++.+|++|.+|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl 229 (534)
T COG0318 150 TLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGL 229 (534)
T ss_pred cHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHH
Confidence 45555433333322222357889999999999999999999999999999888888888 8999999999999999999
Q ss_pred HHHHHHHHhcc-eEEEec--cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCccc-ceeeeecCCCCCHHHH
Q 008342 252 SYTWSLAALCG-TSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTN-VVNVNTAGAPPPPSLL 327 (569)
Q Consensus 252 ~~~~~~~~~g~-~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~-l~~~~~~g~~l~~~~~ 327 (569)
...+..++.+| +.++.. .+++..++..+.++++|++.++|.++..+++........ +.+ +|.++.||+++++++.
T Consensus 230 ~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~-~~~~lr~~~~gg~~~~~~~~ 308 (534)
T COG0318 230 IVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDD-LSSSLRLVLSGGAPLPPELL 308 (534)
T ss_pred HHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccc-cccceEEEEecCCcCCHHHH
Confidence 98888855554 555555 499999999999999999999999999999887766554 454 9999999999999999
Q ss_pred HHhhhc-C-CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEE
Q 008342 328 FAMSQK-G-FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEI 405 (569)
Q Consensus 328 ~~~~~~-~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel 405 (569)
+++.+. + .++.+.||+||+++.++.+...+ . ....++.|.|.+++ +++|+|++++.+.| | ++|||
T Consensus 309 ~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~--------~~~~~~~G~~~pg~-~v~Ivd~~~~~~~p-g--~vGei 375 (534)
T COG0318 309 ERFEERFGPIAILEGYGLTETSPVVTINPPDD-L--------LAKPGSVGRPLPGV-EVRIVDPDGGEVLP-G--EVGEI 375 (534)
T ss_pred HHHHHHhCCCceEEeecccccCceeecCCCch-h--------hhcCCcccccCCCc-EEEEEeCCCCccCC-C--CceEE
Confidence 999944 5 57999999999997777654322 0 23446679999999 69999999776777 5 69999
Q ss_pred EEecCcccccccCCcchhhhhhcC-CeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEE
Q 008342 406 VMRGSCVMKGYLKNPKANEEAFAN-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484 (569)
Q Consensus 406 ~v~~~~~~~gy~~~~~~~~~~~~~-g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 484 (569)
+++||+++.|||++++.+...|.+ |||+|||+|++|++|+++|.||.+|+|+.+|++|+|.+||+++.+||.|.+++|+
T Consensus 376 ~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavv 455 (534)
T COG0318 376 WVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVV 455 (534)
T ss_pred EEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEE
Confidence 999999999999999999998886 9999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 485 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 485 ~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
+.+++.+|+.++++++..++.. .....++|.++|+.+++.|++|+.+.+++ ||+|++||++|+.|++.+.+
T Consensus 456 gvpd~~~Ge~~~a~v~~~~~~~---~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 456 GVPDERWGERVVAVVVLKPGGD---AELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred eCCCCccCceEEEEEEEcCCCC---CCCCHHHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 9999999999999999998743 01156899999999999999999999877 99999999999999999987
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-73 Score=519.47 Aligned_cols=506 Identities=28% Similarity=0.409 Sum_probs=445.7
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
=|.+.|+.++|.++|.++||++|+++.++++||+||++++.++|..|.++|+++||+|.+.+||..+|++++||++++|+
T Consensus 24 yW~d~~l~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv 103 (542)
T COG1021 24 YWQDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGV 103 (542)
T ss_pred cccCCcHHHHHHHHHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEccc-----chHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhc
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQE-----FFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALAR 170 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (569)
.+|.-=|.....+|.++.+...++.+|++.. ......+.....+ ..+++++.++.+..
T Consensus 104 ~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~-------tlr~v~v~ge~~~~---------- 166 (542)
T COG1021 104 APVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHP-------TLRHVIVAGEAEHP---------- 166 (542)
T ss_pred chhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCC-------cceEEEEccCCCCc----------
Confidence 9998888888999999999999999998764 3344455554444 45777777554322
Q ss_pred chhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhh
Q 008342 171 GAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 250 (569)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 250 (569)
......+........+..+..+++++++..+.||||.||.|+.||.....+..+..+.++++..++.++.+|..|.+.
T Consensus 167 --~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfp 244 (542)
T COG1021 167 --SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFP 244 (542)
T ss_pred --chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCC
Confidence 122233333444444445678889999999999999999999999999999998999999999999999999999988
Q ss_pred HH--HHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHH
Q 008342 251 WS--YTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLF 328 (569)
Q Consensus 251 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~ 328 (569)
+. ..+..++.||++++.+..+|+..+.+|+++++|+...+|.....+++..+....+ +++||.+-+||..++++..+
T Consensus 245 lssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~-LsSLrllQVGGarl~~~~Ar 323 (542)
T COG1021 245 LSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERAD-LSSLRLLQVGGARLSATLAR 323 (542)
T ss_pred CCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCC-chheeEEeecCcccCHHHHh
Confidence 75 6677788899999999999999999999999999999999999999998887777 99999999999999999999
Q ss_pred Hhh-hcCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEE
Q 008342 329 AMS-QKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVM 407 (569)
Q Consensus 329 ~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v 407 (569)
++. .+||.+-+.|||.|.-...+ ... .+.+....+.|+|+...|++.|+|.+ |++++.| ++|+|..
T Consensus 324 rv~~~lgC~LQQVFGMAEGLvnyT--RLD--------Dp~E~i~~TQGrPlsP~DEvrvvD~d-g~pv~pG--E~G~Llt 390 (542)
T COG1021 324 RVPAVLGCQLQQVFGMAEGLVNYT--RLD--------DPPEIIIHTQGRPLSPDDEVRVVDAD-GNPVAPG--EVGELLT 390 (542)
T ss_pred hchhhhCchHHHHhhhhhhhhccc--ccC--------CchHheeecCCCcCCCcceeEEecCC-CCCCCCC--Ccceeee
Confidence 998 55999999999999643222 221 22334457889999999999999998 9999999 8999999
Q ss_pred ecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEee
Q 008342 408 RGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 486 (569)
Q Consensus 408 ~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 486 (569)
+||+..+|||+.++-+.+.| .+|+|+|||+++.++||++.+.||.+|+|+.+|+||..+|||+.|..||.|.++++++.
T Consensus 391 RGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVam 470 (542)
T COG1021 391 RGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAM 470 (542)
T ss_pred cCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcC
Confidence 99999999999999999999 58999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhc-CCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 487 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
++.-.||+.++||+.++..- ...+++.++++. +..|++|..+.+++ +|.|+-|||++|.|++.+....
T Consensus 471 pDelLGEksCAfiv~~~~~~------~~~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~~ 540 (542)
T COG1021 471 PDELLGEKSCAFIVVKEPPL------RAAQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASRL 540 (542)
T ss_pred chhhcCcceeEEEEecCCCC------CHHHHHHHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhhhc
Confidence 99999999999999988753 457888888876 88999999999888 9999999999999998887543
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-71 Score=586.07 Aligned_cols=546 Identities=48% Similarity=0.838 Sum_probs=433.6
Q ss_pred CCccccccccccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHH
Q 008342 7 IDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEA 86 (569)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~ 86 (569)
|+......+...+.|+.++|+++++.+|+++|+.+.+.++||+||.++++++|++|.++|+++||+|+|+++|+++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~ 80 (579)
T PLN03102 1 MDNLALCEANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEM 80 (579)
T ss_pred CCCccCCccccccccHHHHHHHHHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHH
Confidence 34556666777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHH
Q 008342 87 QFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEY 166 (569)
Q Consensus 87 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (569)
+|||+++|++++|+++.++.+++.++++.++++++|++++....+.+....++.. +.. ....++.+++......
T Consensus 81 ~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~---- 154 (579)
T PLN03102 81 HFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSE-DSN-LNLPVIFIHEIDFPKR---- 154 (579)
T ss_pred HHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhcccc-ccc-cCceEEEecccccccC----
Confidence 9999999999999999999999999999999999999988766655544333210 000 1123444443211000
Q ss_pred hhhcchhhHHhhhhcCCCCCCC----CCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEc
Q 008342 167 ALARGAIEYEKFLETGDPEFAW----KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWT 242 (569)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~ 242 (569)
......+|.+++......... .....++++++|+|||||||.||+|.++|.++..........+.+...+++++.
T Consensus 155 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~ 233 (579)
T PLN03102 155 -PSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWT 233 (579)
T ss_pred -CcccccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEec
Confidence 001234556555433221110 112356899999999999999999999999976555444445567778899999
Q ss_pred CCccchhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCC
Q 008342 243 LPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPP 322 (569)
Q Consensus 243 ~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l 322 (569)
+|++|..|+...+.++..|+++++...+++.++++.|+++++|++.++|+++..|.+........ .++++.+++||+++
T Consensus 234 ~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~~~~~~~gg~~~ 312 (579)
T PLN03102 234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSP-RSGPVHVLTGGSPP 312 (579)
T ss_pred CChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCC-cccceEEEECCCCC
Confidence 99999999887777788899998888888999999999999999999999999998865333222 56788899999999
Q ss_pred CHHHHHHhhhcCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCce
Q 008342 323 PPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTI 402 (569)
Q Consensus 323 ~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~ 402 (569)
++.+.+++++.|+++++.||+||+++.++.+.....+...+...........|.+......+++.+.+++++++.++++.
T Consensus 313 ~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~ 392 (579)
T PLN03102 313 PAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTM 392 (579)
T ss_pred CHHHHHHHHHcCCeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccceEEeccccccccCCCCCCc
Confidence 99999998888999999999999987665443222221111111011112233333322257788877788887654468
Q ss_pred EEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeE
Q 008342 403 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 482 (569)
Q Consensus 403 Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 482 (569)
|||+++|+.++.||+++++.+...|.+|||+|||+|+++++|++++.||.+|+|+.+|.+|+|.+||.+|.+||.|.+++
T Consensus 393 GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~ 472 (579)
T PLN03102 393 GEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETA 472 (579)
T ss_pred eEEEEECcchhhhhcCChhhhHhhhccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCceeeEEEEecCCcchhh-----hhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHH
Q 008342 483 VVARPDERWGESPCAFVTLKPEADELD-----KGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA 556 (569)
Q Consensus 483 v~~~~~~~~g~~~~~~v~~~~~~~~~~-----~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (569)
|++.+++..++.+.++|++.++....+ ......+++++++++|+.|++|..+++.+ ||+|++||++|++|++++
T Consensus 473 vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~ 552 (579)
T PLN03102 473 VVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIA 552 (579)
T ss_pred EEeccCccccceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHHHHHH
Confidence 999999988999999998876543210 01135689999999999999999998777 999999999999999988
Q ss_pred HhcC
Q 008342 557 KEMG 560 (569)
Q Consensus 557 ~~~~ 560 (569)
.+..
T Consensus 553 ~~~~ 556 (579)
T PLN03102 553 KGLV 556 (579)
T ss_pred HHhh
Confidence 7643
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-71 Score=591.94 Aligned_cols=518 Identities=19% Similarity=0.259 Sum_probs=409.9
Q ss_pred HHHHHHHhhhh--CCCceeeeeC------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhc
Q 008342 22 PLWFINRAATL--HPTRKSVVYG------SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMA 93 (569)
Q Consensus 22 l~~~l~~~a~~--~p~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 93 (569)
..++++++++. +|+++|+++. .+++||+||.+++.++|+.|.++|+++||+|+++++|++++++++|||+++
T Consensus 61 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~ 140 (647)
T PTZ00237 61 CYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARI 140 (647)
T ss_pred HHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 46778888754 7999999873 368999999999999999999999999999999999999999999999999
Q ss_pred CceEeeccccCCHHHHHHHHhcCCceEEEEcccc---------hHHHHHHHHHHhhhcCCCCCcCeEEEecCCCc-chhh
Q 008342 94 GAVLNSINIRLNATVVAFILSHASSAVVIVDQEF---------FSLAEEALKMMEANSEGKLKTPHLIVIGDESC-DSKQ 163 (569)
Q Consensus 94 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 163 (569)
|++++|+++.++.+++.++|++++++++|+++.. .+.+.++.. .. .....+++.+..... ....
T Consensus 141 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~vi~~~~~~~~~~~~ 214 (647)
T PTZ00237 141 GATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIE-LS-----TFKPSNVITLFRNDITSESD 214 (647)
T ss_pred CcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHh-cc-----cCCCCEEEEEEcCCcccccc
Confidence 9999999999999999999999999999997631 222222222 11 001234554422110 0000
Q ss_pred h----HHhhhcchhhHHhhhhcCC----CCCCCCCCCCcCceEEEEeccCCCCCCcceeecchH-HHHHHHHhHhHhCCC
Q 008342 164 L----EYALARGAIEYEKFLETGD----PEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRG-AYLMSLNGALIWGMN 234 (569)
Q Consensus 164 ~----~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~-~~~~~~~~~~~~~~~ 234 (569)
. ..........|++++.... ..........++++++|+|||||||.||+|+++|.+ +..........+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~ 294 (647)
T PTZ00237 215 LKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKD 294 (647)
T ss_pred cccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCC
Confidence 0 0000112345666654321 111111235678999999999999999999999998 443333333445677
Q ss_pred CCcEEEEcCCccchhhHHHHHHHHHhcceEEEecc--CC----hHHHHHHHHhcCccEEeehHHHHHHHHccCCC-----
Q 008342 235 EGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ--VT----AKAVYTAIATHGVTHFCAAPVVLNAIANASPE----- 303 (569)
Q Consensus 235 ~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~--~~----~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~----- 303 (569)
.++++++..|+.|+.+....+.+++.|+++++... +. +..+++.|+++++|++.++|++++.|.+....
T Consensus 295 ~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~ 374 (647)
T PTZ00237 295 IPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIR 374 (647)
T ss_pred CCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccc
Confidence 88999999999998877666777778888877643 12 67899999999999999999999999875422
Q ss_pred CCCCCcccceeeeecCCCCCHHHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccC
Q 008342 304 DTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLD 382 (569)
Q Consensus 304 ~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 382 (569)
.... +++||.++++|+++++++.+++++ +|+++++.||+||+++..+..... .....+++|.|.+++
T Consensus 375 ~~~~-l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~----------~~~~~~s~G~p~~g~- 442 (647)
T PTZ00237 375 SKYD-LSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGH----------INIPYNATGVPSIFI- 442 (647)
T ss_pred cccC-cchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCCC----------CCCCCCCCccCcCCc-
Confidence 1223 789999999999999999999885 599999999999998654432210 111237899999999
Q ss_pred CceeeeCCCCcccCCCCCceEEEEEecC---cccccccCCcchhhhhhc--CCeeecCceeEEcCCCeEEEecccCceEE
Q 008342 383 GLDVIDARTNQPVPADGKTIGEIVMRGS---CVMKGYLKNPKANEEAFA--NGWFHSGDLAVKHPDNYIEIKDRLKDVII 457 (569)
Q Consensus 383 ~~~i~d~~~~~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~~--~g~~~tGD~~~~~~~g~l~~~GR~~d~i~ 457 (569)
+++|+|++ |++++.| +.|||+++++ +++.|||++++.+...|. +|||+|||+|+++++|+++++||.||+|+
T Consensus 443 ~~~i~d~~-g~~~~~g--e~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~ 519 (647)
T PTZ00237 443 KPSILSED-GKELNVN--EIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIK 519 (647)
T ss_pred eEEEECCC-CCCCCCC--CceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEE
Confidence 69999984 8999877 7899999986 788999999998887775 79999999999999999999999999999
Q ss_pred eCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcc--hhhhhhHHHHHHHHHHhcCCCCcCCceEE
Q 008342 458 SGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEAD--ELDKGKLAEDVSKFCRAKMPSYWVPKSVV 535 (569)
Q Consensus 458 ~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 535 (569)
++|++|+|.+||++|.+||.|.+++|++.+++..|+.++++|++.++.. ..+.++..++|.++++++|+++++|..++
T Consensus 520 ~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~ 599 (647)
T PTZ00237 520 ISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKII 599 (647)
T ss_pred ECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEE
Confidence 9999999999999999999999999999999998999999999875421 11223466889999999999999999999
Q ss_pred ecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 536 FAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 536 ~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
+++ ||+|++||++|+.|++++....
T Consensus 600 ~v~~lP~T~sGKi~R~~Lr~~~~~~~ 625 (647)
T PTZ00237 600 IVNQLPKTKTGKIPRQIISKFLNDSN 625 (647)
T ss_pred EcCCCCCCCCccEeHHHHHHHHcCCC
Confidence 877 9999999999999999986543
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-71 Score=587.12 Aligned_cols=496 Identities=24% Similarity=0.317 Sum_probs=419.7
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEee
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNS 99 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 99 (569)
.++.++++++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~ 128 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIIL 128 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhh
Q 008342 100 INIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFL 179 (569)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (569)
+++.++.+++.+++++++++++|++.+....+........ ....++...+... ....++..+++++
T Consensus 129 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 194 (549)
T PRK07788 129 LNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLG-------RLRAWGGNPDDDE-------PSGSTDETLDDLI 194 (549)
T ss_pred eCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccc-------cceEEEEecCccc-------cCCcCcccHHHHh
Confidence 9999999999999999999999999876555443211111 1111211111110 0113445677776
Q ss_pred hcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHH
Q 008342 180 ETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 259 (569)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~ 259 (569)
....... .+...+++++++|||||||.||+|.++|.++..........+++..+++++...|++|.+|+...+.++.
T Consensus 195 ~~~~~~~---~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~ 271 (549)
T PRK07788 195 AGSSTAP---LPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMA 271 (549)
T ss_pred cCCCCCC---CCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHH
Confidence 5433221 1234567899999999999999999999999988777777888899999999999999999987777777
Q ss_pred hcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCcccceeeeecCCCCCHHHHHHhhh-cCCe
Q 008342 260 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFR 336 (569)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~~~~ 336 (569)
.|+++++...+++..+++.++++++|++.++|+++..+++.... .... ++++|.+++||+++++++.+++.+ ++.+
T Consensus 272 ~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~~~~~~~~~~ 350 (549)
T PRK07788 272 LGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYD-TSSLKIIFVSGSALSPELATRALEAFGPV 350 (549)
T ss_pred hCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCC-CCceeEEEEeCCCCCHHHHHHHHHHhCcc
Confidence 78887777788999999999999999999999999999887554 3333 789999999999999999999985 5889
Q ss_pred EecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccc
Q 008342 337 ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY 416 (569)
Q Consensus 337 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy 416 (569)
+++.||+||++..+..+.. .......++|.|.+++ +++++|++ +++++.| +.|||+++|+.++.||
T Consensus 351 l~~~YG~TE~~~~~~~~~~----------~~~~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~~~gY 416 (549)
T PRK07788 351 LYNLYGSTEVAFATIATPE----------DLAEAPGTVGRPPKGV-TVKILDEN-GNEVPRG--VVGRIFVGNGFPFEGY 416 (549)
T ss_pred ceeccCcchhchhhccChh----------hhhhcCCCcccCCCCc-EEEEECCC-cCCCCCC--CeEEEEEeCCCccccc
Confidence 9999999999865443221 1112346899999999 69999986 8888887 8999999999999999
Q ss_pred cCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceee
Q 008342 417 LKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC 496 (569)
Q Consensus 417 ~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 496 (569)
++++.. ...+|||+|||+++++++|.+++.||.||+|+++|++|+|.+||++|.++|.|.+++|++.+++..|+.+.
T Consensus 417 ~~~~~~---~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~ 493 (549)
T PRK07788 417 TDGRDK---QIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLR 493 (549)
T ss_pred cCCCcc---cccCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEE
Confidence 988765 34589999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHH
Q 008342 497 AFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK 555 (569)
Q Consensus 497 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (569)
++|++.++... ..++|.++++++|+.|++|..+.+++ ||+|++||++|++|+++
T Consensus 494 a~vv~~~~~~~-----~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 494 AFVVKAPGAAL-----DEDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred EEEEeCCCCCC-----CHHHHHHHHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence 99998775443 45789999999999999999999777 99999999999999753
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-70 Score=581.63 Aligned_cols=563 Identities=77% Similarity=1.272 Sum_probs=454.5
Q ss_pred CCCcccCCccccccccccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCc
Q 008342 1 MVGVKDIDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNV 80 (569)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~ 80 (569)
|.-+.+++.+...-+.+.++++..++++.+..+|+++|+.+.+.++||+||.++++++|.+|.+.|+++||+|+++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~ 80 (567)
T PLN02479 1 MAKERDIDDLPKNAANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNI 80 (567)
T ss_pred CccccccccccCccccccccCHHHHHHHHHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCc
Confidence 44567788888888888889999999999999999999999989999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcc
Q 008342 81 PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCD 160 (569)
Q Consensus 81 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 160 (569)
++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+...++...+............++.+.+....
T Consensus 81 ~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (567)
T PLN02479 81 PAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCD 160 (567)
T ss_pred HHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCC
Confidence 99999999999999999999999999999999999999999999887665555443332110111122344554432211
Q ss_pred hhhhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEE
Q 008342 161 SKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFL 240 (569)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~ 240 (569)
..........+...|.+++....+..........+++++++|||||||.||+|.+||+++..........+++.++++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~ 240 (567)
T PLN02479 161 PKSLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYL 240 (567)
T ss_pred ccccccccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEE
Confidence 11111111234456777765543322222223345678899999999999999999999877666666677888999999
Q ss_pred EcCCccchhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCC
Q 008342 241 WTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGA 320 (569)
Q Consensus 241 ~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~ 320 (569)
+.+|++|.+++...+...+.+|..+++..+++..+++.++++++|++.++|.++..|...........+++++.++++|+
T Consensus 241 ~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~ 320 (567)
T PLN02479 241 WTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGA 320 (567)
T ss_pred EecchhhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCC
Confidence 99999999998777766667777777788899999999999999999999999999987644332212788999999999
Q ss_pred CCCHHHHHHhhhcCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCC
Q 008342 321 PPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGK 400 (569)
Q Consensus 321 ~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~ 400 (569)
++++.+.+++.+.++++++.||+||+++.++.+...+.|...+.........+.|.+.++++.++|+|++++.+++.+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~ 400 (567)
T PLN02479 321 APPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGK 400 (567)
T ss_pred CCCHHHHHHHHhcCCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCC
Confidence 99999999998779999999999999766555433333222222111122245677888775588999777888887554
Q ss_pred ceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCcee
Q 008342 401 TIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 480 (569)
Q Consensus 401 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~ 480 (569)
+.|||+++|++++.|||++++.+...|.+|||+|||+++++++|.++++||.||+|+.+|.+|+|.+||.+|.++|.|.+
T Consensus 401 ~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~ 480 (567)
T PLN02479 401 TMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLE 480 (567)
T ss_pred CceEEEEeccchhhhhhcCcccccchhcCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccce
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEeccCCCCCCCcccHHHHHHHHHhcC
Q 008342 481 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 481 ~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
++|++.+++..++.+.+++++.++....+.....++|.++++++|+.|++|..+.+.+||+|++||++|+.|++.+..+.
T Consensus 481 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~iP~t~~gKv~r~~L~~~~~~~~ 560 (567)
T PLN02479 481 ASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVFGPLPKTATGKIQKHVLRAKAKEMG 560 (567)
T ss_pred eeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEeccCCCCCccCeeHHHHHHHHHhhC
Confidence 99999988887889999998876643222223567899999999999999999888669999999999999999988766
Q ss_pred Ccc
Q 008342 561 PVK 563 (569)
Q Consensus 561 ~~~ 563 (569)
...
T Consensus 561 ~~~ 563 (567)
T PLN02479 561 PVK 563 (567)
T ss_pred Ccc
Confidence 543
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-70 Score=584.04 Aligned_cols=517 Identities=20% Similarity=0.246 Sum_probs=413.4
Q ss_pred HHHHHHhhhhCCCceeeeeC------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 23 LWFINRAATLHPTRKSVVYG------SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 23 ~~~l~~~a~~~p~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
.+++++++..+|+++|+++. ++++||+||.+++.++|++|.++|+++||+|+++++|++++++++|||+++|++
T Consensus 55 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav 134 (628)
T TIGR02316 55 HNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAI 134 (628)
T ss_pred HHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 57888888899999999872 378999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccch---------HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHh
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA 167 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (569)
++|+++.++.+++.+++++++++++|+++... ..+..+..... ....+++.++....... .
T Consensus 135 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~vi~~~~~~~~~~----~ 204 (628)
T TIGR02316 135 HSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQ------HPPPHVLLVDRGLAPMR----L 204 (628)
T ss_pred EEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcC------CCCCEEEEEeCCCCCcC----c
Confidence 99999999999999999999999999976431 22222222111 02355666654211100 0
Q ss_pred hhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHH-HHHhHhHhCCCCCcEEEEcCCcc
Q 008342 168 LARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLM-SLNGALIWGMNEGAVFLWTLPMF 246 (569)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~-~~~~~~~~~~~~~d~~~~~~p~~ 246 (569)
.......|.+++..............++++++|+|||||||.||+|+++|.+++.. .......++++++|++++..|++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 284 (628)
T TIGR02316 205 IPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVG 284 (628)
T ss_pred ccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence 01112456665544322111112246789999999999999999999999997544 34445567899999999999999
Q ss_pred chhhHHH-HHHHHHhcceEEEec----cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCcccceeeeecC
Q 008342 247 HGNGWSY-TWSLAALCGTSICLR----QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAG 319 (569)
Q Consensus 247 ~~~g~~~-~~~~~~~g~~~~~~~----~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~~~~~g 319 (569)
|..|+.. .+..++.|+++++.. .+++..+++.|+++++|++.++|++++.|.+.... .... +++||.+++||
T Consensus 285 ~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~~~~gG 363 (628)
T TIGR02316 285 WVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHD-LSSLHWLFLAG 363 (628)
T ss_pred eeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCC-ccceeEEEEec
Confidence 9998755 444556666766664 24788999999999999999999999998876432 2223 88999999999
Q ss_pred CCCCHHHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCC
Q 008342 320 APPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPAD 398 (569)
Q Consensus 320 ~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~ 398 (569)
+++++++.+++++ ++.++++.||+||++..++....... ......+++|.|++++ +++|+|+++|++++.+
T Consensus 364 e~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~-------~~~~~~gs~G~p~~g~-~v~i~d~~~g~~~~~g 435 (628)
T TIGR02316 364 EPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLD-------LKPVKLGSPGLPMYGY-HLRVLDEATGRPCGPN 435 (628)
T ss_pred CCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCCCC-------cCCCCCCCcccCcCCc-eEEEEECCCCCCCCCC
Confidence 9999999998874 58999999999999854433221110 0112347889999999 6999999779999887
Q ss_pred CCceEEEEEecC---cccccccCCcchhhhhh----cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHH
Q 008342 399 GKTIGEIVMRGS---CVMKGYLKNPKANEEAF----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKV 471 (569)
Q Consensus 399 ~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~----~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~ 471 (569)
+.|||+++|| ..+.+||++++.+...+ .++||+|||+|++|+||+++++||.||+||++|.+|+|.+||++
T Consensus 436 --~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~ 513 (628)
T TIGR02316 436 --EKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEES 513 (628)
T ss_pred --CcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHH
Confidence 7899999998 46789999887665543 56799999999999999999999999999999999999999999
Q ss_pred HhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchh---hhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcc
Q 008342 472 LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADEL---DKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKI 547 (569)
Q Consensus 472 l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi 547 (569)
|.+||.|.+++|++.+++..|+.++++|++.++.... +.....++|+++++++|+.|++|..+.+++ ||+|++||+
T Consensus 514 l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi 593 (628)
T TIGR02316 514 VSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKL 593 (628)
T ss_pred HHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHH
Confidence 9999999999999999999899999999987654311 122366889999999999999999999877 999999999
Q ss_pred cHHHHHHHHHhcC
Q 008342 548 QKHLLRAKAKEMG 560 (569)
Q Consensus 548 ~r~~l~~~~~~~~ 560 (569)
+|+.|++++....
T Consensus 594 ~r~~L~~~~~~~~ 606 (628)
T TIGR02316 594 LRRSIQALAEGRD 606 (628)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999886543
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-70 Score=585.67 Aligned_cols=520 Identities=19% Similarity=0.230 Sum_probs=411.0
Q ss_pred cCH-HHHHHHhhh-hCCCceeeeeC------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhh
Q 008342 20 LTP-LWFINRAAT-LHPTRKSVVYG------SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAP 91 (569)
Q Consensus 20 ~~l-~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 91 (569)
.|+ .++|++++. .+|+++|+++. .+++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||+
T Consensus 87 ~N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~ 166 (666)
T PLN02654 87 TNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACA 166 (666)
T ss_pred eeHHHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 444 578888875 48999999874 2689999999999999999999999999999999999999999999999
Q ss_pred hcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchH---------HHHHHHHHHhhhcCCCCCcCeEEEecCCCcchh
Q 008342 92 MAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFS---------LAEEALKMMEANSEGKLKTPHLIVIGDESCDSK 162 (569)
Q Consensus 92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 162 (569)
++|++++|+++.++.+++..++++++++++|+++.... .+..+..... ........++.+........
T Consensus 167 ~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 243 (666)
T PLN02654 167 RIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESA---KNGVSVGICLTYENQLAMKR 243 (666)
T ss_pred HcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhcc---ccCCCccEEEEecccccccc
Confidence 99999999999999999999999999999999876432 1222211110 00001122233222110000
Q ss_pred hhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHH-HHHhHhHhCCCCCcEEEE
Q 008342 163 QLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLM-SLNGALIWGMNEGAVFLW 241 (569)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~-~~~~~~~~~~~~~d~~~~ 241 (569)
............|++++...... ........+++++|+|||||||.||+|+++|.+++.. .......++++++|++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~ 322 (666)
T PLN02654 244 EDTKWQEGRDVWWQDVVPNYPTK-CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWC 322 (666)
T ss_pred cccccccCCcccHHHHhhcCCCC-CCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 00000001123355554332211 1112246789999999999999999999999997644 344555678999999999
Q ss_pred cCCccchhhHHHHH-HHHHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCccccee
Q 008342 242 TLPMFHGNGWSYTW-SLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVN 314 (569)
Q Consensus 242 ~~p~~~~~g~~~~~-~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~ 314 (569)
..|+.|++|..+.+ ..++.|+++++... +++..+++.|+++++|++.++|++++.|.+.... .... +++||.
T Consensus 323 ~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~~Lr~ 401 (666)
T PLN02654 323 TADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHS-RKSLRV 401 (666)
T ss_pred cCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCC-hhheeE
Confidence 99999999976554 44566777777643 5789999999999999999999999999876532 2223 789999
Q ss_pred eeecCCCCCHHHHHHhhh-cC---CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCC
Q 008342 315 VNTAGAPPPPSLLFAMSQ-KG---FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDAR 390 (569)
Q Consensus 315 ~~~~g~~l~~~~~~~~~~-~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~ 390 (569)
++++|++++++..+++.+ +| +++.+.||+||+++..+..... ......+++|.|.+++ +++|+|++
T Consensus 402 i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~---------~~~~~~gs~G~p~~g~-~v~i~d~~ 471 (666)
T PLN02654 402 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG---------AWPQKPGSATFPFFGV-QPVIVDEK 471 (666)
T ss_pred EEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCC---------CCCCCCCccCCCCCCc-eEEEECCC
Confidence 999999999999998874 46 7899999999998765432211 0112347899999999 69999976
Q ss_pred CCcccCCCCCceEEEEEec--CcccccccCCcchhhhhh---cCCeeecCceeEEcCCCeEEEecccCceEEeCceeech
Q 008342 391 TNQPVPADGKTIGEIVMRG--SCVMKGYLKNPKANEEAF---ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISS 465 (569)
Q Consensus 391 ~~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~ 465 (569)
|++++.+ +.|||++++ |.++.|||++++.+...+ .+|||+|||++++|+||+++++||.||+|+++|++|+|
T Consensus 472 -g~~~~~~--~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p 548 (666)
T PLN02654 472 -GKEIEGE--CSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGT 548 (666)
T ss_pred -CCCCCCC--CceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECH
Confidence 8888765 689999999 789999999998877655 27999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCC
Q 008342 466 VEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSAT 544 (569)
Q Consensus 466 ~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~ 544 (569)
.+||.+|.+||.|.+++|++.+++..|+.++++|++.++... ..+..++|.++++++|+.+++|..+.+++ ||+|++
T Consensus 549 ~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~--~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~s 626 (666)
T PLN02654 549 AEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPY--SEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRS 626 (666)
T ss_pred HHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCC--CHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCC
Confidence 999999999999999999999999999999999999876432 12256789999999999999999999887 999999
Q ss_pred CcccHHHHHHHHHhc
Q 008342 545 GKIQKHLLRAKAKEM 559 (569)
Q Consensus 545 GKi~r~~l~~~~~~~ 559 (569)
||++|+.|++.+.+.
T Consensus 627 GKi~r~~l~~~~~~~ 641 (666)
T PLN02654 627 GKIMRRILRKIASRQ 641 (666)
T ss_pred cCchHHHHHHHHcCC
Confidence 999999999998753
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-70 Score=576.38 Aligned_cols=525 Identities=22% Similarity=0.286 Sum_probs=417.8
Q ss_pred ccccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcC
Q 008342 15 ANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94 (569)
Q Consensus 15 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 94 (569)
++..+.++.++|++.+.++|+++|+++.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~G 81 (563)
T PLN02860 2 ANHSQAHICQCLTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAG 81 (563)
T ss_pred cchhhhHHHHHHHHHHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhcc
Confidence 35668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHH-HHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchh
Q 008342 95 AVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL-KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAI 173 (569)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (569)
++++|+++.++.+++.++++++++++++++++......... ..++ ....++.+++...... .......
T Consensus 82 av~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~----~~~~~~~ 150 (563)
T PLN02860 82 GIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLP-------SLMWQVFLESPSSSVF----IFLNSFL 150 (563)
T ss_pred EEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCC-------ceeEEEEecCcccccc----cchhhcc
Confidence 99999999999999999999999999999876533222221 0011 1222333332210000 0000111
Q ss_pred hHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHH
Q 008342 174 EYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY 253 (569)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 253 (569)
.++++...............++++++++|||||||.||+|.++|.++..+.......+++.++|+++...|++|.+|+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 230 (563)
T PLN02860 151 TTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS 230 (563)
T ss_pred ccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHH
Confidence 11221111101111112235689999999999999999999999999887777667788999999999999999999988
Q ss_pred HHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCC-CCCcccceeeeecCCCCCHHHHHHhhh
Q 008342 254 TWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT-ILPLTNVVNVNTAGAPPPPSLLFAMSQ 332 (569)
Q Consensus 254 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~l~~l~~~~~~g~~l~~~~~~~~~~ 332 (569)
.+..+..|+++++.+.+++..+++.|+++++|++.++|+++..|++...... ...++++|.+++||+++++++.+++++
T Consensus 231 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~ 310 (563)
T PLN02860 231 ALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKK 310 (563)
T ss_pred HHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHH
Confidence 8888888999888888999999999999999999999999999987643211 122789999999999999999999985
Q ss_pred c--CCeEecccccccCCCCccccccCCCCCC-C-----------CchhhhhccccCCceeeccCCceeeeCCCCcccCCC
Q 008342 333 K--GFRITHTYGLTELTGPASVCAWKPEWDS-L-----------PFETQARLNARQGVRTICLDGLDVIDARTNQPVPAD 398 (569)
Q Consensus 333 ~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~ 398 (569)
. ++++++.||+||+++.++.......... . ..........++|.|.+++ +++|++++ .+
T Consensus 311 ~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~~~~------~g 383 (563)
T PLN02860 311 LFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHV-ELKIGLDE------SS 383 (563)
T ss_pred hcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCc-EEEEecCC------CC
Confidence 4 7899999999999865543322111000 0 0000011123689999999 69998865 23
Q ss_pred CCceEEEEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCC
Q 008342 399 GKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPL 477 (569)
Q Consensus 399 ~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 477 (569)
+.|||+++|+.++.|||++++.+...| .+|||+|||+|+++++|++++.||.+|+|+++|++|+|.+||++|.+||.
T Consensus 384 --~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~ 461 (563)
T PLN02860 384 --RVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPG 461 (563)
T ss_pred --ceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCC
Confidence 789999999999999999999888877 48999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeecCCCCCceeeEEEEecCCcchh---------hhhhHHHHHHHHHHh-cCCCCcCCceEEe-cc-CCCCCCC
Q 008342 478 VLEAAVVARPDERWGESPCAFVTLKPEADEL---------DKGKLAEDVSKFCRA-KMPSYWVPKSVVF-AA-LPKSATG 545 (569)
Q Consensus 478 v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---------~~~~~~~~l~~~~~~-~l~~~~~p~~i~~-~~-lP~t~~G 545 (569)
|.+++|++.+++..++.+++++++.++.... ......++|.+++++ .|+.|++|..+++ .+ ||+|++|
T Consensus 462 V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~G 541 (563)
T PLN02860 462 VASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTG 541 (563)
T ss_pred cceeEEEEEecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCccc
Confidence 9999999999998899999999987652110 011245788999987 5999999998864 45 9999999
Q ss_pred cccHHHHHHHHHhc
Q 008342 546 KIQKHLLRAKAKEM 559 (569)
Q Consensus 546 Ki~r~~l~~~~~~~ 559 (569)
|++|++|++++.+.
T Consensus 542 Ki~r~~L~~~~~~~ 555 (563)
T PLN02860 542 KIRRDEVRREVLSH 555 (563)
T ss_pred chhHHHHHHHHHHH
Confidence 99999999988654
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-69 Score=579.92 Aligned_cols=517 Identities=26% Similarity=0.366 Sum_probs=416.9
Q ss_pred ccccCHHHHHHHhhhhCCCceeeeeC--------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHH
Q 008342 17 YTALTPLWFINRAATLHPTRKSVVYG--------SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQF 88 (569)
Q Consensus 17 ~~~~~l~~~l~~~a~~~p~~~a~~~~--------~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 88 (569)
..+.|++++|+++++++|+++|+++. .+++||+||.+++.++|++|.++|+++||+|+++++|++++++++|
T Consensus 22 ~~~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l 101 (632)
T PRK07529 22 DLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW 101 (632)
T ss_pred cCCCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 34669999999999999999999862 4789999999999999999999999999999999999999999999
Q ss_pred HhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcc--h
Q 008342 89 GAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCD--S 161 (569)
Q Consensus 89 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~ 161 (569)
||+++| +++|+++.++.+++.++++.++++++|++.... ..+.......+ ....++.++..... .
T Consensus 102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~ 173 (632)
T PRK07529 102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALP-------ELRTVVEVDLARYLPGP 173 (632)
T ss_pred HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCC-------cceeEEEecCccccccc
Confidence 999999 569999999999999999999999999986542 22222222222 34455555433210 0
Q ss_pred hhhHH-----hhhcchhhHHhhhhcCCCCCC-CCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCC
Q 008342 162 KQLEY-----ALARGAIEYEKFLETGDPEFA-WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNE 235 (569)
Q Consensus 162 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~ 235 (569)
+.+.. ....+...|.+.+........ ......++++++++|||||||.||+|.+||++++.........+++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~ 253 (632)
T PRK07529 174 KRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP 253 (632)
T ss_pred ccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCC
Confidence 00000 011234556666555432221 112346789999999999999999999999999888877777788899
Q ss_pred CcEEEEcCCccchhhHHHHHHHH-HhcceEEEecc--C----ChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCC
Q 008342 236 GAVFLWTLPMFHGNGWSYTWSLA-ALCGTSICLRQ--V----TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP 308 (569)
Q Consensus 236 ~d~~~~~~p~~~~~g~~~~~~~~-~~g~~~~~~~~--~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 308 (569)
+|++++.+|++|.+++...+... ..|+++++.++ + ....+++.++++++|++.++|+++..|.+..... ..
T Consensus 254 ~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-~~- 331 (632)
T PRK07529 254 GDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVDG-HD- 331 (632)
T ss_pred CCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccC-CC-
Confidence 99999999999999987655554 45666655532 1 1367899999999999999999999998875432 23
Q ss_pred cccceeeeecCCCCCHHHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceee
Q 008342 309 LTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVI 387 (569)
Q Consensus 309 l~~l~~~~~~g~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~ 387 (569)
++++|.+++||+++++++.+++++ +++++++.||+||++.++..+... .....+++|.|.+++ .++++
T Consensus 332 ~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~----------~~~~~~svG~~~p~~-~v~i~ 400 (632)
T PRK07529 332 ISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPD----------GERRIGSVGLRLPYQ-RVRVV 400 (632)
T ss_pred ccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCcc----------ccccCCCcccccCCc-eEEEE
Confidence 789999999999999999999985 499999999999998766543211 112347899999998 58885
Q ss_pred --eCCCC---cccCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCcee
Q 008342 388 --DARTN---QPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGEN 462 (569)
Q Consensus 388 --d~~~~---~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~ 462 (569)
|++ + ++++.| +.|||+++|++++.||++++......+.+|||+|||+|++++||.+++.||.||+|+++|.+
T Consensus 401 ~~d~~-g~~~~~~~~g--~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~ 477 (632)
T PRK07529 401 ILDDA-GRYLRDCAVD--EVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHN 477 (632)
T ss_pred EcCCC-CcccccCCCC--CceEEEEECCCccccccCCccccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEE
Confidence 544 5 677777 78999999999999999876544433468999999999999999999999999999999999
Q ss_pred echHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCC-CCcCCceEEecc-CC
Q 008342 463 ISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP-SYWVPKSVVFAA-LP 540 (569)
Q Consensus 463 v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~-~~~~p~~i~~~~-lP 540 (569)
|+|.+||+.|.+||.|.+++|++.+++..|+.++++|++.++... ..+++.++++++++ .+++|..+.+++ ||
T Consensus 478 i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~-----~~~~l~~~~~~~l~~~~~~P~~i~~v~~lP 552 (632)
T PRK07529 478 IDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASA-----TEAELLAFARDHIAERAAVPKHVRILDALP 552 (632)
T ss_pred ECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCC-----CHHHHHHHHHHhcchhccCCcEEEEecCCC
Confidence 999999999999999999999999999889999999998876544 45789999999987 479999999877 99
Q ss_pred CCCCCcccHHHHHHHHHhcCCc
Q 008342 541 KSATGKIQKHLLRAKAKEMGPV 562 (569)
Q Consensus 541 ~t~~GKi~r~~l~~~~~~~~~~ 562 (569)
+|++||++|++|++.+.+....
T Consensus 553 ~t~~GKi~r~~Lr~~~~~~~~~ 574 (632)
T PRK07529 553 KTAVGKIFKPALRRDAIRRVLR 574 (632)
T ss_pred CCCCCcccHHHHHHHHHHHHHH
Confidence 9999999999999988765443
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-70 Score=584.71 Aligned_cols=521 Identities=21% Similarity=0.226 Sum_probs=406.0
Q ss_pred cccccCHHHHHHHhhhhCCCceeeee---CC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHH
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVY---GS------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEA 86 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~---~~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~ 86 (569)
.....|++++++++++++|+++|+.+ .+ +.+||+||.++++++|++|.++|+++||+|+|+++|+++|+++
T Consensus 40 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~ 119 (651)
T PLN02736 40 HPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIV 119 (651)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHH
Confidence 34456899999999999999999943 11 4699999999999999999999999999999999999999999
Q ss_pred HHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHH
Q 008342 87 QFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEY 166 (569)
Q Consensus 87 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (569)
++||+++|++++|+++.++.+++.+++++++++++|++.+....+......++ ....++.+++..........
T Consensus 120 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~-------~l~~ii~~~~~~~~~~~~~~ 192 (651)
T PLN02736 120 DHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIP-------SVRLIVVVGGADEPLPSLPS 192 (651)
T ss_pred HHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCC-------CceEEEEECCCchhhhhhhc
Confidence 99999999999999999999999999999999999999876655544433332 34455555432111000000
Q ss_pred hhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCcc
Q 008342 167 ALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMF 246 (569)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 246 (569)
.......+|++++..............++++++|+|||||||.||+|++||+++..........+++.++|++++.+|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~ 272 (651)
T PLN02736 193 GTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLA 272 (651)
T ss_pred cCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHH
Confidence 01112356777665433222112235678999999999999999999999999999888888888899999999999999
Q ss_pred chhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCC------------------------
Q 008342 247 HGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASP------------------------ 302 (569)
Q Consensus 247 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~------------------------ 302 (569)
|.+++...+.++..|+++++.. .++..+++.|+++++|++.++|.+++.+.+...
T Consensus 273 h~~~~~~~~~~l~~G~~i~~~~-~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (651)
T PLN02736 273 HIYERVNQIVMLHYGVAVGFYQ-GDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQA 351 (651)
T ss_pred HHHHHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 9999987776666777766554 478899999999999999999999988765310
Q ss_pred ----CCCCC------------Cc-ccceeeeecCCCCCHHHHHHhh-hcCCeEecccccccCCCCccccccCCCCCCCCc
Q 008342 303 ----EDTIL------------PL-TNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPASVCAWKPEWDSLPF 364 (569)
Q Consensus 303 ----~~~~~------------~l-~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~ 364 (569)
..... .+ +++|.+++||+++++++.+++. .+|+++++.||+||+++.++.....
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~-------- 423 (651)
T PLN02736 352 LENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEG-------- 423 (651)
T ss_pred HHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCCC--------
Confidence 00000 01 4799999999999999999988 4599999999999998665543211
Q ss_pred hhhhhccccCCceeeccCCceeeeCCCCcccCCC-CCceEEEEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcC
Q 008342 365 ETQARLNARQGVRTICLDGLDVIDARTNQPVPAD-GKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHP 442 (569)
Q Consensus 365 ~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~-~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~ 442 (569)
....+++|.|.+++ +++|+|.+++.....+ ....|||+++|++++.|||++++.+.+.| .+|||+|||+|++++
T Consensus 424 ---~~~~~~vG~p~pg~-~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~ 499 (651)
T PLN02736 424 ---DNLSGHVGSPNPAC-EVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLP 499 (651)
T ss_pred ---CCCCCccCCccCce-EEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcC
Confidence 12347899999999 6999985433211111 01369999999999999999999999988 489999999999999
Q ss_pred CCeEEEecccCceEEe-CceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCc----------chhhh-
Q 008342 443 DNYIEIKDRLKDVIIS-GGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEA----------DELDK- 510 (569)
Q Consensus 443 ~g~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~----------~~~~~- 510 (569)
||+++|+||.+|+|++ +|++|+|.+||.+|.+||.|.+|+|++. ..++.++|+|++.++. ...+.
T Consensus 500 dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~ 576 (651)
T PLN02736 500 GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPEVLKAWAASEGIKYEDLK 576 (651)
T ss_pred CCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHHHHHHHHHHcCCCccCHH
Confidence 9999999999999995 7999999999999999999999999983 2467899999987531 10000
Q ss_pred -----hhHHHHHHHHHH-----hcCCCCcCCceEEecc-CC------CCCCCcccHHHHHHHHHhc
Q 008342 511 -----GKLAEDVSKFCR-----AKMPSYWVPKSVVFAA-LP------KSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 511 -----~~~~~~l~~~~~-----~~l~~~~~p~~i~~~~-lP------~t~~GKi~r~~l~~~~~~~ 559 (569)
....+.+.+.++ ..|+.|++|+.+.+.+ .| +|++||++|+.+++.|.++
T Consensus 577 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~ 642 (651)
T PLN02736 577 QLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKA 642 (651)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHH
Confidence 001122222222 2599999999999877 54 7999999999999998764
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=564.96 Aligned_cols=508 Identities=30% Similarity=0.440 Sum_probs=423.0
Q ss_pred cccccccccCHHHHHHHhhhhCCCceeeeeCC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHH
Q 008342 12 KISANYTALTPLWFINRAATLHPTRKSVVYGS------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYE 85 (569)
Q Consensus 12 ~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~ 85 (569)
-....|.+.++.++|++.++.+|+++|+++.+ +.+||.||.++++++|++|.+.|+++||+|+++++|++++++
T Consensus 16 ~~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~ 95 (547)
T PRK13295 16 IAAGHWHDRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTV 95 (547)
T ss_pred hcCCCCcCCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHH
Confidence 34456778899999999999999999999876 899999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcc
Q 008342 86 AQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCD 160 (569)
Q Consensus 86 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 160 (569)
++|||+++|++++|++|.++.+++.++++.+++++++++++.. ..+.+...... ....++.++....
T Consensus 96 ~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~- 167 (547)
T PRK13295 96 LYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELP-------ALRHVVVVGGDGA- 167 (547)
T ss_pred HHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCC-------CcceEEEecCCCc-
Confidence 9999999999999999999999999999999999999987642 11222211111 2344555443211
Q ss_pred hhhhHHhhhcchhhHHhhhhcC-----CC--CCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCC
Q 008342 161 SKQLEYALARGAIEYEKFLETG-----DP--EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGM 233 (569)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~-----~~--~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~ 233 (569)
.++.+++... .. ..........+++++++|||||||.||+|.++|.++..........+++
T Consensus 168 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~ 235 (547)
T PRK13295 168 ------------DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGL 235 (547)
T ss_pred ------------cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCC
Confidence 2233333211 00 0111122456899999999999999999999999998888887778899
Q ss_pred CCCcEEEEcCCccchhhHHH-HHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccc
Q 008342 234 NEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 312 (569)
Q Consensus 234 ~~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l 312 (569)
.+++++++..|++|.+|+.. .+..+..|+++++.+.+++..+++.++++++|++.++|.++..+.......... ++++
T Consensus 236 ~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~-~~~l 314 (547)
T PRK13295 236 GADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRP-VSSL 314 (547)
T ss_pred CCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCC-cccc
Confidence 99999999999999998765 444556677777777789999999999999999999999999998776544444 8899
Q ss_pred eeeeecCCCCCHHHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCC
Q 008342 313 VNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDART 391 (569)
Q Consensus 313 ~~~~~~g~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~ 391 (569)
|.+++||+++++++.+++.+ +++++++.||+||++.+++.+.... ......++|.|.+++ .++|+|++
T Consensus 315 ~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~v~i~d~~- 383 (547)
T PRK13295 315 RTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDP---------DERASTTDGCPLPGV-EVRVVDAD- 383 (547)
T ss_pred eEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCc---------chhccCccccccCCc-EEEEECCC-
Confidence 99999999999999999874 5999999999999986554432111 111235789999999 69999976
Q ss_pred CcccCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHH
Q 008342 392 NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKV 471 (569)
Q Consensus 392 ~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~ 471 (569)
+++++.| +.|||+++|+.++.||+++++.+... .+|||+|||+|+++++|++++.||.+|+++++|.+|+|.+||++
T Consensus 384 ~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~ 460 (547)
T PRK13295 384 GAPLPAG--QIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEAL 460 (547)
T ss_pred CCCCCCC--CCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHH
Confidence 8888887 78999999999999999998887766 68899999999999999999999999999999999999999999
Q ss_pred HhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHh-cCCCCcCCceEEecc-CCCCCCCcccH
Q 008342 472 LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQK 549 (569)
Q Consensus 472 l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r 549 (569)
|.+++.|.+++|++.+++..|+.+++++++.++... ..+++.+++++ .++.|++|..+.+++ ||+|++||++|
T Consensus 461 l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~-----~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r 535 (547)
T PRK13295 461 LYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSL-----DFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQK 535 (547)
T ss_pred HHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCC-----CHHHHHHHHHhccCccccCCcEEEEeccCCCCCCccccH
Confidence 999999999999999988888999999998765432 45688889986 799999999999877 99999999999
Q ss_pred HHHHHHHHhc
Q 008342 550 HLLRAKAKEM 559 (569)
Q Consensus 550 ~~l~~~~~~~ 559 (569)
++|++++++.
T Consensus 536 ~~L~~~~~~~ 545 (547)
T PRK13295 536 FRLREMLRGE 545 (547)
T ss_pred HHHHHHHhcC
Confidence 9999988764
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-68 Score=563.27 Aligned_cols=540 Identities=56% Similarity=0.982 Sum_probs=442.9
Q ss_pred CCccccccccccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHH
Q 008342 7 IDDLPKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEA 86 (569)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~ 86 (569)
+..+....+..-++++.++|++.++.+|+++|+.+.+..+||+||.+++.++|.+|.+.|+++||+|+++++|+++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~ 84 (545)
T PRK08162 5 EQGLDRNAANYVPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEA 84 (545)
T ss_pred hcccCccccccccCCHHHHHHHHHHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHH
Confidence 33444445556678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHH
Q 008342 87 QFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEY 166 (569)
Q Consensus 87 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (569)
+|||+++|++++|++++++.+++..+++.++++.++++.+..+.+.+.....+ ..+.+.+........ .
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~---~ 153 (545)
T PRK08162 85 HFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLP--------GPKPLVIDVDDPEYP---G 153 (545)
T ss_pred HHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCC--------CCceEEEecCccccc---c
Confidence 99999999999999999999999999999999999999987766655433222 122222322111000 0
Q ss_pred hhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCcc
Q 008342 167 ALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMF 246 (569)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 246 (569)
....+..++++++....+......+...+++++++|||||||.||+|+++|+++..........+.+..++++++.+|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~ 233 (545)
T PRK08162 154 GRFIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMF 233 (545)
T ss_pred CCCcccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcH
Confidence 01112345666665543333322234556899999999999999999999999877766666677888899999999999
Q ss_pred chhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHH
Q 008342 247 HGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSL 326 (569)
Q Consensus 247 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~ 326 (569)
|.+++...+...+.+++.++...+++..+++.++++++|++.++|+++..|++........ +.+.+.++++|+.+++++
T Consensus 234 h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~~~~~~~~g~~~~~~~ 312 (545)
T PRK08162 234 HCNGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAG-IDHPVHAMVAGAAPPAAV 312 (545)
T ss_pred hhhhHHHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccC-CccceEEEECCCCCCHHH
Confidence 9999887777777888888888899999999999999999999999999999765443333 566777889999999999
Q ss_pred HHHhhhcCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEE
Q 008342 327 LFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIV 406 (569)
Q Consensus 327 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~ 406 (569)
.+.+.+.++++++.||+||+++.+..+...+.+...+.........+.|.+.+..+.++++|++++.+++.++++.|||+
T Consensus 313 ~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~ 392 (545)
T PRK08162 313 IAKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIM 392 (545)
T ss_pred HHHHHHhCCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEE
Confidence 99988779999999999999766666544333333222222223356677766554688999877888887544679999
Q ss_pred EecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEee
Q 008342 407 MRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 486 (569)
Q Consensus 407 v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 486 (569)
++|+.++.||+++++.+...|.+|||+|||+++++++|.+++.||.||+++++|.+|+|.+||..|.++|.|.+++|++.
T Consensus 393 v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~ 472 (545)
T PRK08162 393 FRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAK 472 (545)
T ss_pred EecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEeccCCCCCCCcccHHHHHHHHHhcCCcc
Q 008342 487 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAALPKSATGKIQKHLLRAKAKEMGPVK 563 (569)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~lP~t~~GKi~r~~l~~~~~~~~~~~ 563 (569)
+++..++.+.+++++.++... ..+++.+++++.|+.|++|..+.+.+||+|++||++|+.|++++.++...+
T Consensus 473 ~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~P~~~~~~~iP~t~~gK~~r~~l~~~~~~l~~~~ 544 (545)
T PRK08162 473 PDPKWGEVPCAFVELKDGASA-----TEEEIIAHCREHLAGFKVPKAVVFGELPKTSTGKIQKFVLREQAKSLKAID 544 (545)
T ss_pred eccccCceEEEEEEeCCCCCC-----CHHHHHHHHHHhcccccCCcEEEecccCCCCCcCCcHHHHHHHHhhhhhhc
Confidence 888878889999988766443 457899999999999999999887779999999999999999988765543
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-68 Score=573.25 Aligned_cols=513 Identities=23% Similarity=0.343 Sum_probs=412.5
Q ss_pred CHHHHHHHhhhhCCCceeeeeCC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcC
Q 008342 21 TPLWFINRAATLHPTRKSVVYGS------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94 (569)
Q Consensus 21 ~l~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 94 (569)
...++|+++++.+|+++|+++.+ +++||+||.+++.++|++|.++|+++||+|+++++|++++++++|||+++|
T Consensus 58 ~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 137 (625)
T TIGR02188 58 VSYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIG 137 (625)
T ss_pred HHHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 45678888888999999998743 589999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccccCCHHHHHHHHhcCCceEEEEcccch---------HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhH
Q 008342 95 AVLNSINIRLNATVVAFILSHASSAVVIVDQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE 165 (569)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (569)
++++|+++.++.+++.+++++++++++|+++... ..+.++....+. ...+++.++.......
T Consensus 138 av~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--- 208 (625)
T TIGR02188 138 AIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPV------SVEHVLVVRRTGNPVP--- 208 (625)
T ss_pred CEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCC------CccEEEEEcCCCCCcC---
Confidence 9999999999999999999999999999987532 222222222110 1234555443211100
Q ss_pred HhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHH-hHhHhCCCCCcEEEEcCC
Q 008342 166 YALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLN-GALIWGMNEGAVFLWTLP 244 (569)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~-~~~~~~~~~~d~~~~~~p 244 (569)
........|++++........ .....++++++|+|||||||.||+|+++|.+++..... ....++++++|++++..|
T Consensus 209 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 286 (625)
T TIGR02188 209 -WVEGRDVWWHDLMAKASAYCE-PEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTAD 286 (625)
T ss_pred -ccccccccHHHHHhhcCCCCC-ceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCC
Confidence 001112345666544322221 22356789999999999999999999999997655433 344568899999999999
Q ss_pred ccchhhHHH-HHHHHHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCC-CCCcccceeeeec
Q 008342 245 MFHGNGWSY-TWSLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT-ILPLTNVVNVNTA 318 (569)
Q Consensus 245 ~~~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~l~~l~~~~~~ 318 (569)
++|..+..+ .+..+..|+++++... +++..+++.|+++++|++.++|++++.|.+...... ...+++||.++++
T Consensus 287 ~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~ 366 (625)
T TIGR02188 287 VGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSV 366 (625)
T ss_pred chhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEe
Confidence 999988765 4445556777766642 478999999999999999999999999987653321 1227899999999
Q ss_pred CCCCCHHHHHHhhhc----CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcc
Q 008342 319 GAPPPPSLLFAMSQK----GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQP 394 (569)
Q Consensus 319 g~~l~~~~~~~~~~~----~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~ 394 (569)
|+++++++.+++.+. ++++++.||+||+++.++..... ......+++|.|.+++ +++|+|++ |++
T Consensus 367 G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~---------~~~~~~~~~G~p~~g~-~~~i~d~~-g~~ 435 (625)
T TIGR02188 367 GEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPG---------ATPTKPGSATLPFFGI-EPAVVDEE-GNP 435 (625)
T ss_pred cCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCC---------CCCcCCCcccCCcCCc-eEEEECCC-CCC
Confidence 999999999888743 37899999999998765443211 0112347899999999 69999965 888
Q ss_pred cC-CCCCceEEEEEec--CcccccccCCcchhhhhh---cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHH
Q 008342 395 VP-ADGKTIGEIVMRG--SCVMKGYLKNPKANEEAF---ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEV 468 (569)
Q Consensus 395 ~~-~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~i 468 (569)
++ .+ +.|||++++ ++++.|||++++.+...+ .+|||+|||+++++++|+++++||.||+|+++|++|+|.+|
T Consensus 436 ~~~~g--~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eI 513 (625)
T TIGR02188 436 VEGPG--EGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEI 513 (625)
T ss_pred CCCCC--CeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHH
Confidence 87 66 789999999 589999999998776655 37899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcc
Q 008342 469 EKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKI 547 (569)
Q Consensus 469 E~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi 547 (569)
|++|.+||.|.+++|++.+++..|+.+++++++.++.... ....++|+++++++|+.+++|+.+.+++ ||+|++||+
T Consensus 514 E~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~--~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi 591 (625)
T TIGR02188 514 ESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPD--DELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKI 591 (625)
T ss_pred HHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCC--HHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccc
Confidence 9999999999999999999998899999999988765421 1256789999999999999999998777 999999999
Q ss_pred cHHHHHHHHHhc
Q 008342 548 QKHLLRAKAKEM 559 (569)
Q Consensus 548 ~r~~l~~~~~~~ 559 (569)
+|+.|++++...
T Consensus 592 ~r~~l~~~~~~~ 603 (625)
T TIGR02188 592 MRRLLRKIAAGE 603 (625)
T ss_pred hHHHHHHHHcCC
Confidence 999999997754
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-69 Score=577.60 Aligned_cols=517 Identities=19% Similarity=0.217 Sum_probs=395.6
Q ss_pred cCHHHHHHHhhhhCCCceeeeeC----C-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHh
Q 008342 20 LTPLWFINRAATLHPTRKSVVYG----S-----KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGA 90 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~ 90 (569)
.|+.++|+++++++|+++|+.+. + ..+||+||.++++++|++|.++|+++||+|+|+++|+++|++++|||
T Consensus 45 ~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~ 124 (666)
T PLN02614 45 DSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124 (666)
T ss_pred CcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 49999999999999999999742 1 34899999999999999999999999999999999999999999999
Q ss_pred hhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhc
Q 008342 91 PMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALAR 170 (569)
Q Consensus 91 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (569)
+++|++++|+++.++.+++.+++++++++++|++.+....+. ..++.. ......++.+++..............
T Consensus 125 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~---~~~~~~---~~~l~~vi~~~~~~~~~~~~~~~~~~ 198 (666)
T PLN02614 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELF---KTCPNS---TEYMKTVVSFGGVSREQKEEAETFGL 198 (666)
T ss_pred HHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHH---Hhcccc---cccceEEEEeCCCChHHhhhhhhcCc
Confidence 999999999999999999999999999999999876433322 111100 00134566664321100000000011
Q ss_pred chhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHh-----CCCCCcEEEEcCCc
Q 008342 171 GAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIW-----GMNEGAVFLWTLPM 245 (569)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~ 245 (569)
...+|++++..............++++++|+|||||||.||||++||++++..+......+ ++.++|++++.+|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl 278 (666)
T PLN02614 199 VIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPL 278 (666)
T ss_pred EEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccH
Confidence 1345666665432211111224578999999999999999999999999988776554433 57789999999999
Q ss_pred cchhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCC----C-----------------
Q 008342 246 FHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE----D----------------- 304 (569)
Q Consensus 246 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~----~----------------- 304 (569)
+|.+++......+..|+++++. .+++..+++.|++++||+++++|++++.+...... .
T Consensus 279 ~H~~~~~~~~~~l~~G~~v~~~-~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 357 (666)
T PLN02614 279 AHIFDRVIEECFIQHGAAIGFW-RGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFG 357 (666)
T ss_pred HHHHHHHHHHHHHHhCCEEEEe-CCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 9999987655555667766555 46899999999999999999999999988642100 0
Q ss_pred ----------CCC------------Cc-ccceeeeecCCCCCHHHHHHhhhc-CCeEecccccccCCCCccccccCCCCC
Q 008342 305 ----------TIL------------PL-TNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWD 360 (569)
Q Consensus 305 ----------~~~------------~l-~~l~~~~~~g~~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~ 360 (569)
... .+ +++|.+++||+++++.+.+.+..+ ++++++.||+||+++..+.....
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~---- 433 (666)
T PLN02614 358 NMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPD---- 433 (666)
T ss_pred HHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeeccc----
Confidence 000 01 589999999999998865544455 58999999999997644332211
Q ss_pred CCCchhhhhccccCCceeeccCCceeeeCC--CCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeecCcee
Q 008342 361 SLPFETQARLNARQGVRTICLDGLDVIDAR--TNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLA 438 (569)
Q Consensus 361 ~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~--~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~ 438 (569)
.....+++|.|++++ +++|+|.+ .+.+++.| +.|||+++|++++.|||++++.+.+.|.+|||+|||+|
T Consensus 434 ------~~~~~gsvG~p~pg~-evki~d~~~~~~~~~~~g--~~GEl~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg 504 (666)
T PLN02614 434 ------ELDMLGTVGPPVPNV-DIRLESVPEMEYDALAST--PRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVG 504 (666)
T ss_pred ------cCCcCCcccCcCCce-EEEEeeecccCcccCCCC--CCceEEEcCCcccccccCCHHHhhhhhccCCcccceEE
Confidence 011247899999999 69999833 24667766 78999999999999999999999999999999999999
Q ss_pred EEcCCCeEEEecccCceEE-eCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcch----------
Q 008342 439 VKHPDNYIEIKDRLKDVII-SGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE---------- 507 (569)
Q Consensus 439 ~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~---------- 507 (569)
++|+||+++|+||.+|+|+ .+|++|+|.+||++|.+||.|.+++|++.+... .++|+|++....-.
T Consensus 505 ~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~---~l~alvv~~~~~~~~~~~~~~~~~ 581 (666)
T PLN02614 505 EWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFES---FLVAIANPNQQILERWAAENGVSG 581 (666)
T ss_pred EEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcc---eEEEEEeCCHHHHHHHHHhcCCCc
Confidence 9999999999999999999 579999999999999999999999999986432 38888887653110
Q ss_pred -----hhhhhHHHHHHHHH-----HhcCCCCcCCceEEeccCC-------CCCCCcccHHHHHHHHHhc
Q 008342 508 -----LDKGKLAEDVSKFC-----RAKMPSYWVPKSVVFAALP-------KSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 508 -----~~~~~~~~~l~~~~-----~~~l~~~~~p~~i~~~~lP-------~t~~GKi~r~~l~~~~~~~ 559 (569)
.......+.+.+.+ ++.|+.|.+++.+.+..-| +|+++|++|+.+.+.|.++
T Consensus 582 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~ 650 (666)
T PLN02614 582 DYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSV 650 (666)
T ss_pred CHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHH
Confidence 00111233333433 3569999999999876622 8999999999999998865
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=562.03 Aligned_cols=505 Identities=18% Similarity=0.200 Sum_probs=401.7
Q ss_pred ccccccccccccCHHHHHHHhhhhCCCceeeeeCC-eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHH
Q 008342 9 DLPKISANYTALTPLWFINRAATLHPTRKSVVYGS-KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQ 87 (569)
Q Consensus 9 ~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~ 87 (569)
..++.-..+...++.+.|.+.++++|+++|+.+.+ +++||+||.++++++|+.|.+ .+||+|+++++|++++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~ 84 (539)
T PRK06334 8 ARSKRGKLRSGKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAY 84 (539)
T ss_pred hhhhccccCcCCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHH
Confidence 34555566777899999999999999999998776 799999999999999999987 38999999999999999999
Q ss_pred HHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHh
Q 008342 88 FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA 167 (569)
Q Consensus 88 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (569)
|||+++|++++|+++.++.+++.+++++++++++|++.+....+.+...... . ....++.+++....
T Consensus 85 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-----~-~~~~~i~~~~~~~~------- 151 (539)
T PRK06334 85 FATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDA-----E-YPFSLIYMEEVRKE------- 151 (539)
T ss_pred HHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccc-----c-ccccEEEEehhhhh-------
Confidence 9999999999999999999999999999999999998776544433221100 0 01233433321100
Q ss_pred hhcchhhHHhhhhc----CCCC-----CCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcE
Q 008342 168 LARGAIEYEKFLET----GDPE-----FAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAV 238 (569)
Q Consensus 168 ~~~~~~~~~~~l~~----~~~~-----~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~ 238 (569)
..+.+.+.. ..+. ........++++++|+|||||||.||+|.+||+++..........++++++|+
T Consensus 152 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~ 226 (539)
T PRK06334 152 -----LSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDV 226 (539)
T ss_pred -----ccHHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCce
Confidence 000000000 0000 00012346789999999999999999999999999888777777788999999
Q ss_pred EEEcCCccchhhHHH-HHHHHHhcceEEEec-cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeee
Q 008342 239 FLWTLPMFHGNGWSY-TWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVN 316 (569)
Q Consensus 239 ~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~ 316 (569)
+++.+|++|.+|+.. .+..+..|+++++.. .+++..+++.|+++++|++.++|++++.|++........ ++++|.++
T Consensus 227 ~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~ 305 (539)
T PRK06334 227 MMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESC-LPSLRFVV 305 (539)
T ss_pred EEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccc-cccccEEE
Confidence 999999999999865 344556677766654 578999999999999999999999999998765444334 78999999
Q ss_pred ecCCCCCHHHHHHhhhc--CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcc
Q 008342 317 TAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQP 394 (569)
Q Consensus 317 ~~g~~l~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~ 394 (569)
+||+++++++.+++.+. ++++++.||+||++.+++...... .....++|.|++++ +++|+|++++.+
T Consensus 306 ~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~----------~~~~~~vG~p~~g~-~v~i~d~~~~~~ 374 (539)
T PRK06334 306 IGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNS----------PKHESCVGMPIRGM-DVLIVSEETKVP 374 (539)
T ss_pred ECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCC----------CCCCCcCceecCCC-EEEEEcCCCCcc
Confidence 99999999999999854 789999999999986655432110 11235789999999 699999888899
Q ss_pred cCCCCCceEEEEEecCcccccccCCcchhhhhh--cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHH
Q 008342 395 VPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF--ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 472 (569)
Q Consensus 395 ~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~--~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l 472 (569)
++.| +.|||+++|++++.||+++++.+.... .+|||+|||+|+++++|.+++.||.+|+|+++|++|+|.|||++|
T Consensus 375 ~~~g--~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l 452 (539)
T PRK06334 375 VSSG--ETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESIL 452 (539)
T ss_pred CCCC--ceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHH
Confidence 9988 799999999999999999987644322 367999999999999999999999999999999999999999999
Q ss_pred hcCCCcee------eEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhc-CCCCcCCceEEecc-CCCCCC
Q 008342 473 YLHPLVLE------AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVFAA-LPKSAT 544 (569)
Q Consensus 473 ~~~~~v~~------~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~ 544 (569)
.+||+|.+ ++|++.++.. ..++++++.. . ..+++.++|++. ++.|++|+.+.+++ ||+|++
T Consensus 453 ~~~~~v~~~~~~~~~~v~~~~~~~--~~~~~~~~~~--~-------~~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~ 521 (539)
T PRK06334 453 MEGFGQNAADHAGPLVVCGLPGEK--VRLCLFTTFP--T-------SISEVNDILKNSKTSSILKISYHHQVESIPMLGT 521 (539)
T ss_pred HHccCCccccccCceEEEcCCCCc--eEEEEEEecc--C-------ChHHHHHHHHhcCCcccccchheeeecccccccC
Confidence 99999987 6777766432 2344444421 1 236788889886 78999999988777 999999
Q ss_pred CcccHHHHHHHHHhc
Q 008342 545 GKIQKHLLRAKAKEM 559 (569)
Q Consensus 545 GKi~r~~l~~~~~~~ 559 (569)
||++|+.|+++....
T Consensus 522 GKi~r~~L~~~~~~~ 536 (539)
T PRK06334 522 GKPDYCSLNALAKSL 536 (539)
T ss_pred CcccHHHHHHHHHHh
Confidence 999999999987653
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-68 Score=560.72 Aligned_cols=492 Identities=26% Similarity=0.358 Sum_probs=413.2
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
+.++.++|.++++++|+++|+++.++++||+||.++++++|++|.++|+++|++|+++++|+++++++++||+++|++++
T Consensus 42 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 121 (537)
T PRK13382 42 GMGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL 121 (537)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
|+++.++.+++.++++.++++++|++.+....+.......+ ....++.+.+.. ....++.+
T Consensus 122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------~~~~~~~~ 182 (537)
T PRK13382 122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCP-------QATRIVAWTDED------------HDLTVEVL 182 (537)
T ss_pred ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhcc-------ccceEEEecCCc------------ccccHHHH
Confidence 99999999999999999999999999876655544322211 122233332211 01233333
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
....... ......++.++++|||||||.||+|.++|.+++.........+.+..+++++...|++|.+|+...+..+
T Consensus 183 ~~~~~~~---~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l 259 (537)
T PRK13382 183 IAAHAGQ---RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAA 259 (537)
T ss_pred hhccCcC---CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHH
Confidence 3322111 1123457889999999999999999999998888777777777888999999999999999997777777
Q ss_pred HhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCC-CCCCcccceeeeecCCCCCHHHHHHhhh-cCCe
Q 008342 259 ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED-TILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFR 336 (569)
Q Consensus 259 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~~~~ 336 (569)
..|+++++...+++..+++.|+++++|++.++|++++.|.+..... ....++++|.+++||+++++++.+.|.+ ++.+
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~ 339 (537)
T PRK13382 260 SLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDV 339 (537)
T ss_pred hcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcCCc
Confidence 7888877777889999999999999999999999999998764321 1112568999999999999999999985 5889
Q ss_pred EecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccc
Q 008342 337 ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY 416 (569)
Q Consensus 337 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy 416 (569)
+++.||+||++.+++.+... .....+++|.|++++ .++|+|++ +++++.| +.|||+++|++++.||
T Consensus 340 i~~~YG~TE~~~~~~~~~~~----------~~~~~~~vG~p~~~~-~~~i~d~~-~~~~~~g--~~GEl~v~g~~~~~gY 405 (537)
T PRK13382 340 IYNNYNATEAGMIATATPAD----------LRAAPDTAGRPAEGT-EIRILDQD-FREVPTG--EVGTIFVRNDTQFDGY 405 (537)
T ss_pred EEecccccccCcceecChhH----------hccCCCCccccCcCc-EEEEECCC-CCCCCCC--CeeEEEEEcCCcccCc
Confidence 99999999998765543211 112346899999999 69999986 8888877 7899999999999999
Q ss_pred cCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceee
Q 008342 417 LKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC 496 (569)
Q Consensus 417 ~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 496 (569)
+ ++.+ ..|.+|||+|||+++++++|++++.||.||+|+.+|.+|+|.+||..|.++|+|.+++|++.+++..|+.+.
T Consensus 406 ~--~~~~-~~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~ 482 (537)
T PRK13382 406 T--SGST-KDFHDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLA 482 (537)
T ss_pred c--ccch-hhccCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEE
Confidence 8 3333 345689999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred EEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHH
Q 008342 497 AFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 554 (569)
Q Consensus 497 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (569)
+++++.++... ..+++++++++.|+.|++|..+.+++ ||+|++||++|++|++
T Consensus 483 a~vv~~~~~~~-----~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 483 AFVVLKPGASA-----TPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA 536 (537)
T ss_pred EEEEECCCCCC-----CHHHHHHHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence 99988765433 55789999999999999999999876 9999999999999864
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-68 Score=554.63 Aligned_cols=490 Identities=29% Similarity=0.444 Sum_probs=417.7
Q ss_pred CHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEee
Q 008342 21 TPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSK-LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNS 99 (569)
Q Consensus 21 ~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 99 (569)
.+.+.|+++|+.+|+++|++++++.+||.||.++++++|++|.+ .|+++|++|+++++|+++++++++||+++|++++|
T Consensus 3 ~~~~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~ 82 (496)
T PRK06839 3 GIAYWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVP 82 (496)
T ss_pred cHHHHHHHHHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 47889999999999999999999999999999999999999985 79999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhh
Q 008342 100 INIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFL 179 (569)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (569)
+++.++.+++..+++.+++++++++++....+....... ....++.+.+ +.++.
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~------------------~~~~~ 136 (496)
T PRK06839 83 LNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVS--------YVQRVISITS------------------LKEIE 136 (496)
T ss_pred cCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhcc--------CcceEEEecc------------------hHhhh
Confidence 999999999999999999999999887655443322111 1223333322 11221
Q ss_pred hcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHH-HHH
Q 008342 180 ETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW-SLA 258 (569)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~-~~~ 258 (569)
..... .......+++++++|||||||.||+|.++|.++..........+++..+|++++.+|++|.+|+.... ..+
T Consensus 137 ~~~~~---~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l 213 (496)
T PRK06839 137 DRKID---NFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTL 213 (496)
T ss_pred ccCCC---CCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHH
Confidence 11111 11224567899999999999999999999999887776666777889999999999999999986554 445
Q ss_pred HhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCCeEe
Q 008342 259 ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRIT 338 (569)
Q Consensus 259 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~ 338 (569)
..|++.++...+++..+++.++++++|++.++|.+++.+.+........ ++++|.+++||+++++++.+.+.+.|++++
T Consensus 214 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~~~~~~~~~~~~~g~~~~ 292 (496)
T PRK06839 214 FAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTN-LQSVRWFYNGGAPCPEELMREFIDRGFLFG 292 (496)
T ss_pred hcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCC-CcccceEEECCCCCCHHHHHHHHHhCCeeE
Confidence 5677766667889999999999999999999999999999876554444 889999999999999999999987799999
Q ss_pred cccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccC
Q 008342 339 HTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 418 (569)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~ 418 (569)
+.||+||++..++.+.... .....+++|.|.+++ .++|+|++ ++.++.| +.|||+++|+.++.||++
T Consensus 293 ~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~p~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gy~~ 359 (496)
T PRK06839 293 QGFGMTETSPTVFMLSEED---------ARRKVGSIGKPVLFC-DYELIDEN-KNKVEVG--EVGELLIRGPNVMKEYWN 359 (496)
T ss_pred eeccCCCCCcceEeccccc---------ccccCCCCcccCCCc-eEEEECCC-cCCCCCC--CceEEEEECCCcchhhcC
Confidence 9999999987554432111 112347899999999 69999987 6668877 789999999999999999
Q ss_pred CcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEE
Q 008342 419 NPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF 498 (569)
Q Consensus 419 ~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~ 498 (569)
+++.+...+.+|||+|||+++++++|.+++.||.+|+|+.+|.+|+|.+||++|.++|+|.+++|++.+++..|+.++++
T Consensus 360 ~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~ 439 (496)
T PRK06839 360 RPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAF 439 (496)
T ss_pred ChHHHHHHHcCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred EEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 499 VTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 499 v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
++..++... ..+++++++++.|+.+++|..+.+++ +|+|.+||++|++|+++.++
T Consensus 440 v~~~~~~~~-----~~~~l~~~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 440 IVKKSSSVL-----IEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred EEECCCCCC-----CHHHHHHHHHhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence 998876543 45789999999999999999999777 99999999999999987654
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-68 Score=568.92 Aligned_cols=510 Identities=24% Similarity=0.338 Sum_probs=410.7
Q ss_pred HHHHHHhhhhCCCceeeeeCC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 23 LWFINRAATLHPTRKSVVYGS------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 23 ~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
.++|+++++.+|+++|+++.+ +++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 149 (637)
T PRK00174 70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149 (637)
T ss_pred HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 577888999999999999743 47999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccch---------HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHh
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA 167 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (569)
++|+++.++.+++.+++++++++++|+++... ..+.......+ ....++.++...... .+
T Consensus 150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~--- 218 (637)
T PRK00174 150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCP-------SVEKVIVVRRTGGDV-DW--- 218 (637)
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCC-------CccEEEEEcCCCCCc-Cc---
Confidence 99999999999999999999999999976532 22222222222 234455544321100 00
Q ss_pred hhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHH-hHhHhCCCCCcEEEEcCCcc
Q 008342 168 LARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLN-GALIWGMNEGAVFLWTLPMF 246 (569)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~-~~~~~~~~~~d~~~~~~p~~ 246 (569)
.......|++++........ ......+++++|+|||||||.||+|+++|.+++..... ....+++.++|++++..|++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 297 (637)
T PRK00174 219 VEGRDLWWHELVAGASDECE-PEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVG 297 (637)
T ss_pred CCCCcccHHHHHhhcCCCCC-ccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCch
Confidence 01122445565543322221 22346789999999999999999999999998655433 33456888999999999999
Q ss_pred chhhHHHHH-HHHHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCC-CCCCcccceeeeecCC
Q 008342 247 HGNGWSYTW-SLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED-TILPLTNVVNVNTAGA 320 (569)
Q Consensus 247 ~~~g~~~~~-~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~l~~l~~~~~~g~ 320 (569)
|..++.+.+ .+++.|+++++... +++..+++.|+++++|++.++|++++.|++..... ....+++||.++++|+
T Consensus 298 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge 377 (637)
T PRK00174 298 WVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGE 377 (637)
T ss_pred HhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCC
Confidence 999876544 44556777666542 47899999999999999999999999998865431 1122789999999999
Q ss_pred CCCHHHHHHhhhc-C---CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccC
Q 008342 321 PPPPSLLFAMSQK-G---FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVP 396 (569)
Q Consensus 321 ~l~~~~~~~~~~~-~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~ 396 (569)
++++++.+++.+. + +++++.||+||+++.++...... .....+++|.|++++ +++|+|++ +++++
T Consensus 378 ~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~~vG~p~~g~-~~~i~d~~-g~~~~ 446 (637)
T PRK00174 378 PINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGA---------TPLKPGSATRPLPGI-QPAVVDEE-GNPLE 446 (637)
T ss_pred CCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCC---------CCcCCCcccCCCCCc-eEEEECCC-CCCCC
Confidence 9999999888743 3 78999999999987654322110 111236899999999 69999976 88888
Q ss_pred CCCCceEEEEEec--CcccccccCCcchhhhhh---cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHH
Q 008342 397 ADGKTIGEIVMRG--SCVMKGYLKNPKANEEAF---ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKV 471 (569)
Q Consensus 397 ~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~ 471 (569)
.+ +.|||+++| ++++.|||++++.+...+ .+|||+|||+++++++|+++++||.||+|+++|++|+|.+||++
T Consensus 447 ~g--~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~ 524 (637)
T PRK00174 447 GG--EGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 524 (637)
T ss_pred CC--CcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHH
Confidence 77 789999999 689999999998776665 37899999999999999999999999999999999999999999
Q ss_pred HhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHH
Q 008342 472 LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKH 550 (569)
Q Consensus 472 l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~ 550 (569)
|.++|.|.+++|++.+++..|+.+++++++.++... .....++|+++++++|+.+++|..+.+++ ||+|++||++|+
T Consensus 525 l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~--~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~ 602 (637)
T PRK00174 525 LVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEP--SDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRR 602 (637)
T ss_pred HHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCC--CHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHH
Confidence 999999999999999999889999999998876432 12246789999999999999999999877 999999999999
Q ss_pred HHHHHHHhc
Q 008342 551 LLRAKAKEM 559 (569)
Q Consensus 551 ~l~~~~~~~ 559 (569)
+|++.+...
T Consensus 603 ~L~~~~~~~ 611 (637)
T PRK00174 603 ILRKIAEGE 611 (637)
T ss_pred HHHHHHcCC
Confidence 999987654
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=557.12 Aligned_cols=517 Identities=26% Similarity=0.402 Sum_probs=428.4
Q ss_pred ccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 17 YTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 17 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
..++|+.+++.+.++++|+++|+.+.++++||+||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus 4 ~~~~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~ 83 (528)
T PRK07470 4 RRVMNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAV 83 (528)
T ss_pred ccCCCHHHHHHHHHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeE
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHH
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYE 176 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (569)
++++++.++.+++.++++.++++.++++++..+.......... ....++.++.... ...+.
T Consensus 84 ~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------~~~~~ 144 (528)
T PRK07470 84 WVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASP-------DLTHVVAIGGARA------------GLDYE 144 (528)
T ss_pred EEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCC-------cCceEEEeCCCcc------------cccHH
Confidence 9999999999999999999999999999876555443322221 2344555543211 13455
Q ss_pred hhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHh--CCCCCcEEEEcCCccchhhHHHH
Q 008342 177 KFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIW--GMNEGAVFLWTLPMFHGNGWSYT 254 (569)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~g~~~~ 254 (569)
+++..............++++++|+|||||||.||+|.++|.++...+......+ +..++|+++..+|++|.+++...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 224 (528)
T PRK07470 145 ALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQL 224 (528)
T ss_pred HHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHH
Confidence 5544322222222234668899999999999999999999999876554433322 56788999999999999998654
Q ss_pred HHHHHhcceEEEec--cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhh-
Q 008342 255 WSLAALCGTSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS- 331 (569)
Q Consensus 255 ~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~- 331 (569)
+ ..+.|+++++.+ .+++..+++.|+++++|++.++|++++.+.+........ ++++|.+++||+++++....++.
T Consensus 225 ~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~ 302 (528)
T PRK07470 225 C-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYD-HSSLRYVIYAGAPMYRADQKRALA 302 (528)
T ss_pred H-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCC-CcceEEEEEcCCCCCHHHHHHHHH
Confidence 4 456677776664 578999999999999999999999999998876544444 78999999999999999988887
Q ss_pred hcCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCc
Q 008342 332 QKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC 411 (569)
Q Consensus 332 ~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 411 (569)
.++.++++.||+||+++.+..+..... . .........+++|.|.+++ .++++|++ +++++.+ +.|||+++|+.
T Consensus 303 ~~g~~~~~~YG~TE~~~~~~~~~~~~~-~--~~~~~~~~~~~~G~~~~g~-~~~i~d~~-~~~~~~g--~~Gel~i~~~~ 375 (528)
T PRK07470 303 KLGKVLVQYFGLGEVTGNITVLPPALH-D--AEDGPDARIGTCGFERTGM-EVQIQDDE-GRELPPG--ETGEICVIGPA 375 (528)
T ss_pred HhCcHHHHhCCCcccCCceeecchhhc-c--ccccccceeeccCcccCCc-EEEEECCC-CCCCCCC--CceEEEEeCCc
Confidence 458899999999999876654432100 0 0000122347889999999 69999975 8888877 78999999999
Q ss_pred ccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCC
Q 008342 412 VMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 491 (569)
Q Consensus 412 ~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 491 (569)
++.||+++++.+...|.+|||+|||+++++++|++++.||.||+++++|.+++|.+||..|.+++.|.+++|++.+++..
T Consensus 376 ~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~ 455 (528)
T PRK07470 376 VFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVW 455 (528)
T ss_pred cchhhcCCHHHHHhhhcCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCCccccc
Q 008342 492 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPVKMIK 566 (569)
Q Consensus 492 g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~~~~~ 566 (569)
|+.+.++++..++... +.+++.++|+++|+.+++|..+++.+ ||+|++||++|+.|++++.+....+.-+
T Consensus 456 ~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~~~~~ 526 (528)
T PRK07470 456 GEVGVAVCVARDGAPV-----DEAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEERGLLDLER 526 (528)
T ss_pred CceeEEEEEECCCCCC-----CHHHHHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhcccccccc
Confidence 8888888887765432 45789999999999999999988776 9999999999999999999888766543
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=556.91 Aligned_cols=517 Identities=35% Similarity=0.557 Sum_probs=446.3
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
.+.+.++.++|.++++.+|+++|+.+.++.+||+||++++.++|+.|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus 2 ~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~ 81 (521)
T PRK06187 2 QDYPLTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGA 81 (521)
T ss_pred CcccCCHHHHHHHHHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCe
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhH
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEY 175 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (569)
+++++++.++.+++..+++.+++++++++.+..+.+......++ ....++.+++.... ........+
T Consensus 82 ~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~------~~~~~~~~~ 148 (521)
T PRK06187 82 VLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLP-------TVRTVIVEGDGPAA------PLAPEVGEY 148 (521)
T ss_pred EEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccC-------CccEEEEecCcccc------ccccccccH
Confidence 99999999999999999999999999999987776665544333 23456655543311 011234556
Q ss_pred HhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHH
Q 008342 176 EKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 255 (569)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (569)
.+++........ ......+++++++|||||||.||+|.+||.++..........++++++|++++..|++|.+++...+
T Consensus 149 ~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 227 (521)
T PRK06187 149 EELLAAASDTFD-FPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPY 227 (521)
T ss_pred HHHhhcCCccCC-CCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHH
Confidence 666554433322 2234667899999999999999999999999998888888888999999999999999999998877
Q ss_pred HHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc-C
Q 008342 256 SLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-G 334 (569)
Q Consensus 256 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~-~ 334 (569)
.++..|+++++.+..++..+++.++++++|++.++|++++.+.......... ++++|.+++||+++++++.+.+.+. +
T Consensus 228 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~-~~~l~~v~~~Ge~l~~~~~~~~~~~~~ 306 (521)
T PRK06187 228 LALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVD-FSSLRLVIYGGAALPPALLREFKEKFG 306 (521)
T ss_pred HHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccC-cchhhEEEEcCcCCCHHHHHHHHHHhC
Confidence 7778888888887789999999999999999999999999999887664444 8899999999999999999999865 9
Q ss_pred CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccc
Q 008342 335 FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK 414 (569)
Q Consensus 335 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 414 (569)
+++++.||+||++++...+....... .......++|.|.+++ .++|+|++ +.+++.+.++.|||+++|+.+..
T Consensus 307 ~~v~~~YG~tE~~~~~~~~~~~~~~~-----~~~~~~~~~G~~~~~~-~~~i~~~~-~~~~~~~~g~~Gel~v~~~~~~~ 379 (521)
T PRK06187 307 IDLVQGYGMTETSPVVSVLPPEDQLP-----GQWTKRRSAGRPLPGV-EARIVDDD-GDELPPDGGEVGEIIVRGPWLMQ 379 (521)
T ss_pred cchheeeccCccCcccccCCcccccc-----cccccCCccccccCCe-EEEEECCC-CCCCCCCCCCeeEEEEECcchhh
Confidence 99999999999987766654322110 0112447899999999 69999987 78888833489999999999999
Q ss_pred cccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCce
Q 008342 415 GYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 494 (569)
Q Consensus 415 gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~ 494 (569)
||+++++.+...|.++||+|||+++++++|.+++.||.+|+++.+|.++++.+||++|.++++|.+++|++.+++..++.
T Consensus 380 ~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~ 459 (521)
T PRK06187 380 GYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGER 459 (521)
T ss_pred hhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888899
Q ss_pred eeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 495 PCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 495 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
+.++++..++... ..+++.++++++++.+.+|..+.+++ ||+|++||++|+.|+++|.+.
T Consensus 460 ~~~~v~~~~~~~~-----~~~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~~ 520 (521)
T PRK06187 460 PVAVVVLKPGATL-----DAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEG 520 (521)
T ss_pred EEEEEEECCCCCC-----CHHHHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhcC
Confidence 9999998776543 45789999999999999999998776 999999999999999998764
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-68 Score=562.86 Aligned_cols=517 Identities=26% Similarity=0.372 Sum_probs=425.7
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
...++++.++++++++++|+++|+.+.++.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 28 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~ 107 (573)
T PRK05605 28 DYGDTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGA 107 (573)
T ss_pred CCCcCCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCc
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhh--h---------
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ--L--------- 164 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~--------- 164 (569)
+++|++|.++.+++.+++++++++++|+++............. ....++.++........ .
T Consensus 108 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 179 (573)
T PRK05605 108 VVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT--------PLETIVSVNMIAAMPLLQRLALRLPIPAL 179 (573)
T ss_pred EEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc--------ccceeEeeecccccccccccccccccccc
Confidence 9999999999999999999999999999887655544432211 12233333211000000 0
Q ss_pred ------HHhhhcchhhHHhhhhcCCCCC---CCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhC-C-
Q 008342 165 ------EYALARGAIEYEKFLETGDPEF---AWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG-M- 233 (569)
Q Consensus 165 ------~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~-~- 233 (569)
......+...|+++........ ........+++++++|||||||.||+|.+||++++.........+. +
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~ 259 (573)
T PRK05605 180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLG 259 (573)
T ss_pred cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccC
Confidence 0001123455666554422110 1112345789999999999999999999999999877665443332 2
Q ss_pred CCCcEEEEcCCccchhhHHHHHH-HHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccc
Q 008342 234 NEGAVFLWTLPMFHGNGWSYTWS-LAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 312 (569)
Q Consensus 234 ~~~d~~~~~~p~~~~~g~~~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l 312 (569)
..++++++..|++|.+|+...+. .+..|+++++.+.+++..+++.++++++|++.++|.+++.+.+........ ++++
T Consensus 260 ~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l 338 (573)
T PRK05605 260 DGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVD-LSGV 338 (573)
T ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCC-chhc
Confidence 34789999999999999865444 456677777777889999999999999999999999999999876555444 7899
Q ss_pred eeeeecCCCCCHHHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCC
Q 008342 313 VNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDART 391 (569)
Q Consensus 313 ~~~~~~g~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~ 391 (569)
|.+++||+++++++.+++.+ .+.++++.||+||+++++..+.... ....+++|.|.+++ .++|+|+++
T Consensus 339 r~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~i~d~~~ 407 (573)
T PRK05605 339 RNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSD----------DRRPGYVGVPFPDT-EVRIVDPED 407 (573)
T ss_pred cEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCccc----------CCcCCccccCCCCC-EEEEEcCCC
Confidence 99999999999999999885 4899999999999987665543211 12236889999999 699999886
Q ss_pred -CcccCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHH
Q 008342 392 -NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEK 470 (569)
Q Consensus 392 -~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~ 470 (569)
+.+++.+ +.|||+++|+.++.||++++..+...|.+|||+|||+++++++|.+++.||.||+++.+|.+|+|.+||+
T Consensus 408 ~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~ 485 (573)
T PRK05605 408 PDETMPDG--EEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEE 485 (573)
T ss_pred CCccCCCC--CeeEEEEecCchhhhhcCChhHhhhcccCCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHH
Confidence 6788877 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccH
Q 008342 471 VLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQK 549 (569)
Q Consensus 471 ~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r 549 (569)
++.+++.|.+++|++.+++..++.+++++++.++... ..++|.++++++|+.+++|..+++.+ ||+|++||++|
T Consensus 486 ~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r 560 (573)
T PRK05605 486 VLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAAL-----DPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRR 560 (573)
T ss_pred HHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCC-----CHHHHHHHHHHhCccccCCcEEEEeccCCCCCcccccH
Confidence 9999999999999999988888999999988776433 45789999999999999999998776 99999999999
Q ss_pred HHHHHHHHhc
Q 008342 550 HLLRAKAKEM 559 (569)
Q Consensus 550 ~~l~~~~~~~ 559 (569)
++|++++.+.
T Consensus 561 ~~L~~~~~~~ 570 (573)
T PRK05605 561 REVREELLEK 570 (573)
T ss_pred HHHHHHHHHH
Confidence 9999988654
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=555.68 Aligned_cols=510 Identities=25% Similarity=0.346 Sum_probs=424.9
Q ss_pred cccccccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhh
Q 008342 12 KISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAP 91 (569)
Q Consensus 12 ~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 91 (569)
..+.+..+.++.++|+++++.+|+++|+++.++++||+||.+++.++|..|.+.|+++|++|+++++|++++++++|||+
T Consensus 13 ~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~ 92 (542)
T PRK06155 13 VDPLPPSERTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCA 92 (542)
T ss_pred cccCCccccCHHHHHHHHHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHH
Confidence 34556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcc
Q 008342 92 MAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARG 171 (569)
Q Consensus 92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (569)
++|++++|+++.++.+++.++++++++++++++.+....+....... .....++.++..... . ...
T Consensus 93 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~------~~~ 158 (542)
T PRK06155 93 WLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGD-------LPLPAVWLLDAPASV-S------VPA 158 (542)
T ss_pred HhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccc-------cCcceEEEecCcccc-c------ccc
Confidence 99999999999999999999999999999999987665554322111 023445555432110 0 000
Q ss_pred hhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhH
Q 008342 172 AIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 251 (569)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 251 (569)
.....++.... .........++++++++|||||||.||+|.++|.++..........+++++++++++.+|++|..++
T Consensus 159 ~~~~~~~~~~~--~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~ 236 (542)
T PRK06155 159 GWSTAPLPPLD--APAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNAL 236 (542)
T ss_pred ccchhhhcccC--CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHH
Confidence 00000111000 1111123456889999999999999999999999998887777778899999999999999999999
Q ss_pred HHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhh
Q 008342 252 SYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS 331 (569)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~ 331 (569)
...+..+..|+++++...+++..+++.|+++++|++.++|+++..|.+........ ..+++.++.+| +++.+.+.++
T Consensus 237 ~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~l~~~~~g~--~~~~~~~~~~ 313 (542)
T PRK06155 237 NAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDR-AHRVRVALGPG--VPAALHAAFR 313 (542)
T ss_pred HHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccc-cCceEEEEEcC--CCHHHHHHHH
Confidence 87777788888888888889999999999999999999999999998876544443 67888777555 5788888887
Q ss_pred h-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecC
Q 008342 332 Q-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS 410 (569)
Q Consensus 332 ~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~ 410 (569)
+ +++++++.||+||++.++..+.. ....+++|.+.+++ .++|+|++ +++++.+ +.|||+++|+
T Consensus 314 ~~~~~~v~~~YG~tE~~~~~~~~~~------------~~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gei~v~~~ 377 (542)
T PRK06155 314 ERFGVDLLDGYGSTETNFVIAVTHG------------SQRPGSMGRLAPGF-EARVVDEH-DQELPDG--EPGELLLRAD 377 (542)
T ss_pred HHcCCCEEeeecccccCccccCCCC------------CCCCCCcCccCCCc-eEEEECCC-CCCCCCC--CceEEEEecC
Confidence 4 59999999999999876654321 12236789999999 69999976 8888887 7899999998
Q ss_pred ---cccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeec
Q 008342 411 ---CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487 (569)
Q Consensus 411 ---~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 487 (569)
.++.||+++++.+...|.++||+|||+|+++++|.+++.||.+|+|+++|.+++|.+||++|.++|+|.+++|++.+
T Consensus 378 ~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~ 457 (542)
T PRK06155 378 EPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVP 457 (542)
T ss_pred CccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCC
Q 008342 488 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP 561 (569)
Q Consensus 488 ~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~ 561 (569)
++..++.+.+++++..+... +..++.++|+++++.+++|..+.+++ ||+|++||++|++|++++.+.+.
T Consensus 458 ~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 527 (542)
T PRK06155 458 SELGEDEVMAAVVLRDGTAL-----EPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGVTADT 527 (542)
T ss_pred ccccCceEEEEEEECCCCCC-----CHHHHHHHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhccCCch
Confidence 88878888888887765443 55789999999999999999998777 99999999999999998765443
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-68 Score=562.53 Aligned_cols=505 Identities=24% Similarity=0.385 Sum_probs=419.2
Q ss_pred cCHH-HHHHHhhh-hCCCceeeeeCC----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhc
Q 008342 20 LTPL-WFINRAAT-LHPTRKSVVYGS----KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMA 93 (569)
Q Consensus 20 ~~l~-~~l~~~a~-~~p~~~a~~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 93 (569)
+++. +++++++. .+|+++|+.+.+ +++||+||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~ 121 (570)
T PRK04319 42 VNIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKN 121 (570)
T ss_pred eeHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 3444 68888877 579999998753 68999999999999999999999999999999999999999999999999
Q ss_pred CceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchh
Q 008342 94 GAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAI 173 (569)
Q Consensus 94 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (569)
|++++|+++.++.+++.++++.++++++|++......... ..++ ....++.+++... ...+..
T Consensus 122 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~--------~~~~~~ 184 (570)
T PRK04319 122 GAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLP-------SLKHVLLVGEDVE--------EGPGTL 184 (570)
T ss_pred CcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCC-------CceEEEEECCCcC--------CCcCcc
Confidence 9999999999999999999999999999998765433221 1111 2344555543221 112234
Q ss_pred hHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHH
Q 008342 174 EYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY 253 (569)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 253 (569)
.+.+++........ .....++++++++|||||||.||+|.++|++++.........+++.++|++++..|++|.+|+..
T Consensus 185 ~~~~~~~~~~~~~~-~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~ 263 (570)
T PRK04319 185 DFNALMEQASDEFD-IEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSY 263 (570)
T ss_pred CHHHHHhhcCCcCC-ccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchH
Confidence 56666544332221 12345678999999999999999999999999888877777888999999999999999888754
Q ss_pred -HHHHHHhcceEEEec-cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCcccceeeeecCCCCCHHHHHH
Q 008342 254 -TWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFA 329 (569)
Q Consensus 254 -~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~~~~~g~~l~~~~~~~ 329 (569)
.+.++..|+++++.. .+++..+++.|+++++|++.++|++++.+.+.... .... ++++|.++++|+++++++.++
T Consensus 264 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~ 342 (570)
T PRK04319 264 GIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYD-LSSLRHILSVGEPLNPEVVRW 342 (570)
T ss_pred HHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCC-cccceEEEEcccCCCHHHHHH
Confidence 445556677766664 58899999999999999999999999999876432 1223 789999999999999999999
Q ss_pred hhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEe
Q 008342 330 MSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMR 408 (569)
Q Consensus 330 ~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~ 408 (569)
+++ ++.++++.||+||+++.++..... .....+++|.|.+++ +++|+|++ +.+++.| +.|||+++
T Consensus 343 ~~~~~g~~i~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~p~~g~-~~~i~d~~-~~~~~~g--~~Gel~i~ 408 (570)
T PRK04319 343 GMKVFGLPIHDNWWMTETGGIMIANYPA----------MDIKPGSMGKPLPGI-EAAIVDDQ-GNELPPN--RMGNLAIK 408 (570)
T ss_pred HHHHhCCCeEeceeecccCCEEEecCCC----------CCCCCCcCcCCCCCC-EEEEECCC-CCCCCCC--CceEEEEc
Confidence 885 599999999999998755432111 011236899999999 69999976 7788777 89999999
Q ss_pred c--CcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEee
Q 008342 409 G--SCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 486 (569)
Q Consensus 409 ~--~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 486 (569)
| +.++.||+++++.+...|.+|||+|||+++++++|.++++||.||+|+.+|++|+|.+||+.|.++|.|.+++|++.
T Consensus 409 ~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~ 488 (570)
T PRK04319 409 KGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGK 488 (570)
T ss_pred CCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecc
Confidence 7 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 487 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
+++..|+.+.+++++.++... .+...++|.++++++|+.|++|..+++++ ||+|++||++|++|+++..+.
T Consensus 489 ~~~~~g~~~~a~v~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~ 560 (570)
T PRK04319 489 PDPVRGEIIKAFVALRPGYEP--SEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWELGL 560 (570)
T ss_pred cCcCCceEEEEEEEECCCCCC--CHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHhCC
Confidence 999889999999998775432 12256789999999999999999999877 999999999999999987643
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=550.32 Aligned_cols=480 Identities=28% Similarity=0.443 Sum_probs=413.1
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEee
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNS 99 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 99 (569)
+|+.++|++++.++|+++|+++.++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVL 81 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhh
Q 008342 100 INIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFL 179 (569)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (569)
+++.++.+++..++++++++.++++.+......... . ..++++.
T Consensus 82 i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~---~---------------------------------~~~~~~~ 125 (483)
T PRK03640 82 LNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI---S---------------------------------VKFAELM 125 (483)
T ss_pred cCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc---c---------------------------------ccHHHHh
Confidence 999999999999999999999999876543322100 0 1122222
Q ss_pred hcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHH
Q 008342 180 ETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 259 (569)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~ 259 (569)
...............+++++++|||||||.||+|.++|.++..........++++++|++++.+|++|.+++...+..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~ 205 (483)
T PRK03640 126 NGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVI 205 (483)
T ss_pred hcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHh
Confidence 22111111112345678999999999999999999999999888777777789999999999999999999987777788
Q ss_pred hcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCCeEec
Q 008342 260 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITH 339 (569)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~ 339 (569)
.|+++++.+.+++.++++.++++++|++.++|+++..+.+...... . ..++|.++++|+++++...+.+++.++++++
T Consensus 206 ~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~-~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~ 283 (483)
T PRK03640 206 YGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEGT-Y-PSSFRCMLLGGGPAPKPLLEQCKEKGIPVYQ 283 (483)
T ss_pred cCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCccc-c-CCcceEEEEcCCCCCHHHHHHHHHhCCCeee
Confidence 8888888888999999999999999999999999999987654332 2 4689999999999999999998888999999
Q ss_pred ccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCC
Q 008342 340 TYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 419 (569)
Q Consensus 340 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~ 419 (569)
.||+||++..+..+... ......+++|.|.+++ ++.+.++ +++++.+ +.|||+++|++++.||+++
T Consensus 284 ~YG~tE~~~~~~~~~~~---------~~~~~~~~vG~p~~~~-~~~i~~~--~~~~~~g--~~Gel~v~g~~~~~gy~~~ 349 (483)
T PRK03640 284 SYGMTETASQIVTLSPE---------DALTKLGSAGKPLFPC-ELKIEKD--GVVVPPF--EEGEIVVKGPNVTKGYLNR 349 (483)
T ss_pred eeccCcccccccccCcc---------cccccCCCcccccCCc-EEEEecC--CCcCCCC--CceEEEEECcchhhhhcCC
Confidence 99999987644332211 1112347899999999 6888875 4677776 7899999999999999999
Q ss_pred cchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEE
Q 008342 420 PKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFV 499 (569)
Q Consensus 420 ~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v 499 (569)
++.+...|.+|||+|||+++++++|.+++.||.+|+++.+|.++++.+||+.+.+++.|.++++++.+++..++.+.+++
T Consensus 350 ~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~ 429 (483)
T PRK03640 350 EDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFV 429 (483)
T ss_pred HHHHHHHHhcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888788888877
Q ss_pred EecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 500 TLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 500 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
+..... ..+++++++++.|+.+++|..+++++ ||+|++||++|++|++++++
T Consensus 430 ~~~~~~-------~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 430 VKSGEV-------TEEELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred EeCCCC-------CHHHHHHHHHHhccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence 754432 34789999999999999999998777 99999999999999999875
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=559.42 Aligned_cols=515 Identities=26% Similarity=0.376 Sum_probs=427.6
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCchhHHHHHHHhhhcC
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKL-SIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 94 (569)
..++.|+.++|.+.+.++|+++|+++.++++||+||.+++.++|..|.+. |+++|++|+++++|+++++++++||+++|
T Consensus 6 ~~~~~tl~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 85 (546)
T PRK08314 6 TLPETSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRAN 85 (546)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcC
Confidence 35577999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred ceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCc--ch-----------
Q 008342 95 AVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESC--DS----------- 161 (569)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~----------- 161 (569)
++++|+++.++.+++.++++.++++++|++.+....+....... ....++....... ..
T Consensus 86 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (546)
T PRK08314 86 AVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--------RLRHVIVAQYSDYLPAEPEIAVPAWLRA 157 (546)
T ss_pred cEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--------CcceEEEecchhhcccccccCccccccc
Confidence 99999999999999999999999999999988766554432221 1222332211000 00
Q ss_pred -hhhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEE
Q 008342 162 -KQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFL 240 (569)
Q Consensus 162 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~ 240 (569)
.........++..|++.+..... .......++++++++|||||||.||+|.++|++++.........+++..+|+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l 235 (546)
T PRK08314 158 EPPLQALAPGGVVAWKEALAAGLA--PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVL 235 (546)
T ss_pred ccccccccccccccHHHHhcccCC--CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEE
Confidence 00000111234456665543221 122335678999999999999999999999999999888877788899999999
Q ss_pred EcCCccchhhHHHHH-HHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecC
Q 008342 241 WTLPMFHGNGWSYTW-SLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAG 319 (569)
Q Consensus 241 ~~~p~~~~~g~~~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g 319 (569)
+.+|++|.+|+...+ .++..|+++++.+.+++..+++.++++++|++.++|.++..++......... ++++|.+++||
T Consensus 236 ~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~-~~~l~~~~~gG 314 (546)
T PRK08314 236 AVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERD-LSSLRYIGGGG 314 (546)
T ss_pred EEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccC-chhhheeeecc
Confidence 999999999986554 4556677777778889999999999999999999999999988765433333 78899999999
Q ss_pred CCCCHHHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCC
Q 008342 320 APPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPAD 398 (569)
Q Consensus 320 ~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~ 398 (569)
+++++++.+++.+ ++.++++.||+||++......... .....++|.|.+++ +++|+|++++.+++.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-----------~~~~~~~G~~~~g~-~~~i~d~~~~~~~~~g 382 (546)
T PRK08314 315 AAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPD-----------RPKLQCLGIPTFGV-DARVIDPETLEELPPG 382 (546)
T ss_pred ccCCHHHHHHHHHHcCCcEEecccccccccceecCCCc-----------CCCCCccCcccCCe-EEEEEeCCCCcCCCCC
Confidence 9999999999884 599999999999998655432210 11236789999999 6999998889999888
Q ss_pred CCceEEEEEecCcccccccCCcchhhhhhc----CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhc
Q 008342 399 GKTIGEIVMRGSCVMKGYLKNPKANEEAFA----NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 474 (569)
Q Consensus 399 ~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 474 (569)
+.|||+++|++++.||+++++.+...|. ++||+|||+|+++++|.+++.||.||+|+++|.+|+|.+||.+|.+
T Consensus 383 --~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~ 460 (546)
T PRK08314 383 --EVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYK 460 (546)
T ss_pred --CceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHh
Confidence 7899999999999999999988888773 3599999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHH
Q 008342 475 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLR 553 (569)
Q Consensus 475 ~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (569)
+|+|.+++|++.++...++.++++++..++.... ...+++.++|+++|++|++|..+++++ ||+|++||++|+.|+
T Consensus 461 ~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~---~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~ 537 (546)
T PRK08314 461 HPAIQEACVIATPDPRRGETVKAVVVLRPEARGK---TTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQ 537 (546)
T ss_pred CcchheEEEEeCCCcccCceeEEEEEECCCCCCC---CCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHH
Confidence 9999999999999988889999999987764321 134789999999999999999999877 999999999999998
Q ss_pred HHHHh
Q 008342 554 AKAKE 558 (569)
Q Consensus 554 ~~~~~ 558 (569)
+...+
T Consensus 538 ~~~~~ 542 (546)
T PRK08314 538 EQEKA 542 (546)
T ss_pred HHHhh
Confidence 76554
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-67 Score=565.00 Aligned_cols=517 Identities=20% Similarity=0.249 Sum_probs=410.0
Q ss_pred HHHHHHHhhhhCCCceeeeeC------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 22 PLWFINRAATLHPTRKSVVYG------SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 22 l~~~l~~~a~~~p~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
..++|++++..+|+++|+++. .+++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 55 ~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 134 (629)
T PRK10524 55 CHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGA 134 (629)
T ss_pred HHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 377888998899999999872 36899999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccc---------hHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHH
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEF---------FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEY 166 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (569)
+++|+++.++.+++.+++++++++++|+++.. .+.+.++..... .....++.++.......
T Consensus 135 v~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~vi~~~~~~~~~~---- 204 (629)
T PRK10524 135 IHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQ------HKPRHVLLVDRGLAPMA---- 204 (629)
T ss_pred EEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcC------CCCCEEEEEeCCCCCcC----
Confidence 99999999999999999999999999997642 223333332221 02345665553211100
Q ss_pred hhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHH-hHhHhCCCCCcEEEEcCCc
Q 008342 167 ALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLN-GALIWGMNEGAVFLWTLPM 245 (569)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~-~~~~~~~~~~d~~~~~~p~ 245 (569)
........|.++...............++++++++|||||||.||+|.++|.+++..... ....+++.++|++++..|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 284 (629)
T PRK10524 205 RVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDI 284 (629)
T ss_pred cccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCC
Confidence 011112345555443222111112245688999999999999999999999987554433 3445688899999999999
Q ss_pred cchhhHHHHHH-HHHhcceEEEec----cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCcccceeeeec
Q 008342 246 FHGNGWSYTWS-LAALCGTSICLR----QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTA 318 (569)
Q Consensus 246 ~~~~g~~~~~~-~~~~g~~~~~~~----~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~~~~~ 318 (569)
.|..++.+.+. +++.|+++++.. .+++..+++.|+++++|++.++|++++.|.+.... .... ++++|.++++
T Consensus 285 ~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~i~~~ 363 (629)
T PRK10524 285 GWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHD-LSSLRALFLA 363 (629)
T ss_pred CeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccC-hhheeEEEEe
Confidence 99988755444 455566666654 35788999999999999999999999998875432 1223 7899999999
Q ss_pred CCCCCHHHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCC
Q 008342 319 GAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPA 397 (569)
Q Consensus 319 g~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~ 397 (569)
|+++++++.+++.+ +++++++.||+||+++.+........ ......+++|.|.+++ +++|+|+++|++++.
T Consensus 364 Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~G~p~~g~-~~~i~d~~~g~~~~~ 435 (629)
T PRK10524 364 GEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGVE-------DRPTRLGSPGVPMYGY-NVKLLNEVTGEPCGP 435 (629)
T ss_pred CCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCcc-------cCcCCCCCcccCcCCc-eEEEEeCCCCCCCCC
Confidence 99999999998874 58999999999999854433221100 0112347899999999 699999866999988
Q ss_pred CCCceEEEEEecC---cccccccCCcchhhhhh----cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHH
Q 008342 398 DGKTIGEIVMRGS---CVMKGYLKNPKANEEAF----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEK 470 (569)
Q Consensus 398 ~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~----~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~ 470 (569)
| +.|||+++|+ ..+.+||++++.....+ .++||+|||+|+++++|+++++||.||+|+++|.+|+|.+||+
T Consensus 436 g--~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~ 513 (629)
T PRK10524 436 N--EKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEE 513 (629)
T ss_pred C--CcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHH
Confidence 7 7899999998 57789999887665443 4689999999999999999999999999999999999999999
Q ss_pred HHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchh---hhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCc
Q 008342 471 VLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADEL---DKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGK 546 (569)
Q Consensus 471 ~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GK 546 (569)
+|.+||.|.+++|++.+++..|+.+++++++.++.... ......++|+++++++|+.+++|..+.+++ ||+|++||
T Consensus 514 ~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGK 593 (629)
T PRK10524 514 SISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGK 593 (629)
T ss_pred HHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcc
Confidence 99999999999999999998899999999987653211 122356889999999999999999999887 99999999
Q ss_pred ccHHHHHHHHHhc
Q 008342 547 IQKHLLRAKAKEM 559 (569)
Q Consensus 547 i~r~~l~~~~~~~ 559 (569)
++|+.|++++...
T Consensus 594 i~R~~L~~~~~~~ 606 (629)
T PRK10524 594 LLRRAIQAIAEGR 606 (629)
T ss_pred hHHHHHHHHHcCC
Confidence 9999999987643
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-68 Score=558.16 Aligned_cols=520 Identities=20% Similarity=0.240 Sum_probs=410.9
Q ss_pred ccccccccccCHHHHHHHhhhhCCCceeeeeCC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHH
Q 008342 11 PKISANYTALTPLWFINRAATLHPTRKSVVYGS--KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQF 88 (569)
Q Consensus 11 ~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 88 (569)
...+..-.+.++.+.|.+.|+++|+++|+++.+ +.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|
T Consensus 5 ~~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~l 84 (540)
T PRK05857 5 KFQAMPQLPSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVL 84 (540)
T ss_pred cccccccCCcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHH
Confidence 344555667799999999999999999998643 689999999999999999999999999999999999999999999
Q ss_pred HhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhh
Q 008342 89 GAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYAL 168 (569)
Q Consensus 89 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (569)
||+++|++++|+++.++.+++.++++.++++++|+++.............. ...++.++......
T Consensus 85 A~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~------- 149 (540)
T PRK05857 85 ACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALH--------SIPVIAVDIAAVTR------- 149 (540)
T ss_pred HHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcccccccccc--------ccceeEeecccccc-------
Confidence 999999999999999999999999999999999998865322111111111 11233332211000
Q ss_pred hcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhH----hHhCCCCCcEEEEcCC
Q 008342 169 ARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA----LIWGMNEGAVFLWTLP 244 (569)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~----~~~~~~~~d~~~~~~p 244 (569)
.+...+..... ........+++++++|||||||.||+|.++|+++.++..... ..+.+..++++++.+|
T Consensus 150 -----~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (540)
T PRK05857 150 -----ESEHSLDAASL--AGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLP 222 (540)
T ss_pred -----ccccccccccc--ccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCC
Confidence 00000000000 011224668899999999999999999999999876654322 1235667889999999
Q ss_pred ccchhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCH
Q 008342 245 MFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPP 324 (569)
Q Consensus 245 ~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~ 324 (569)
++|.+++...+..++.|++++ +...++..+++.|+++++|++.++|+++..+.......... ++++|.+++||++++.
T Consensus 223 ~~h~~~l~~~~~~l~~G~~~v-~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~~~~ 300 (540)
T PRK05857 223 ATHIGGLWWILTCLMHGGLCV-TGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANAT-VPSLRLVGYGGSRAIA 300 (540)
T ss_pred ccccchHHHHHHHhhcceeEE-ecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCc-CccceEEEEcCccCCc
Confidence 999999987777777788765 45678899999999999999999999999998775444444 8899999999999998
Q ss_pred HHHHHhhhcCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCC---CCCc
Q 008342 325 SLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPA---DGKT 401 (569)
Q Consensus 325 ~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~---~~~~ 401 (569)
...+++...++++++.||+||++.....+..... .......+++|.|.+++ +++|+|+++..+++. ..++
T Consensus 301 ~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~g~-~v~i~d~~~~~~~~~~~~~~~~ 373 (540)
T PRK05857 301 ADVRFIEATGVRTAQVYGLSETGCTALCLPTDDG------SIVKIEAGAVGRPYPGV-DVYLAATDGIGPTAPGAGPSAS 373 (540)
T ss_pred hhHHHHHHhCCeeecccCCCcCCceeeecccccc------cccccccCCcCcccCCc-EEEEECccccCccccccCCCCC
Confidence 8776555669999999999999854332221110 00111236899999999 699999874434432 1237
Q ss_pred eEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceee
Q 008342 402 IGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEA 481 (569)
Q Consensus 402 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~ 481 (569)
.|||+++|++++.||+++++.+.+.|.+|||+|||+|+++++|++++.||.||+|+++|.+|+|.+||.+|..||.|.++
T Consensus 374 ~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~ 453 (540)
T PRK05857 374 FGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREA 453 (540)
T ss_pred cceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 482 AVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 482 ~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
+|++.++...++.+.++++..+.......++..+.+.+.+++.+++|++|..+.+.+ ||+|++||++|++|++.+++..
T Consensus 454 ~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~~~ 533 (540)
T PRK05857 454 ACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATADK 533 (540)
T ss_pred EEEecCccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhhcc
Confidence 999999888788888888766543322222355677778888899999999999877 9999999999999999988654
Q ss_pred C
Q 008342 561 P 561 (569)
Q Consensus 561 ~ 561 (569)
.
T Consensus 534 ~ 534 (540)
T PRK05857 534 A 534 (540)
T ss_pred c
Confidence 3
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-67 Score=557.50 Aligned_cols=513 Identities=25% Similarity=0.351 Sum_probs=414.7
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSK-LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
..|+.++|+++++.+|+++|+++.++++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||+++|+++
T Consensus 23 ~~~~~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~ 102 (562)
T PRK05677 23 YPNIQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIV 102 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 3589999999999999999999999999999999999999999997 699999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcch--hh------------
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDS--KQ------------ 163 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~------------ 163 (569)
+|++|.++.+++.+++++++++++|++.+....+.+..... ..+.++..+...... ..
T Consensus 103 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (562)
T PRK05677 103 VNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT--------GVKHVIVTEVADMLPPLKRLLINAVVKHVKK 174 (562)
T ss_pred eecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc--------CcceeEEecccccccchhhhhcccchhhccc
Confidence 99999999999999999999999999877655444332211 122222221110000 00
Q ss_pred -hHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhC--CC-CCcEE
Q 008342 164 -LEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG--MN-EGAVF 239 (569)
Q Consensus 164 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~--~~-~~d~~ 239 (569)
...........+.+.+..............++++++++|||||||.||+|.++|.++..........++ +. ..+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 254 (562)
T PRK05677 175 MVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEIL 254 (562)
T ss_pred cccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEE
Confidence 000001122344444433322211122346789999999999999999999999999877665554443 33 34688
Q ss_pred EEcCCccchhhHHHHHHHH-HhcceEEEec-cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeee
Q 008342 240 LWTLPMFHGNGWSYTWSLA-ALCGTSICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 317 (569)
Q Consensus 240 ~~~~p~~~~~g~~~~~~~~-~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~ 317 (569)
++.+|++|.+++...+... ..|++.++.+ ..++..+++.|+++++|++.++|+++..+.......... ++++|.+++
T Consensus 255 ~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~v~~ 333 (562)
T PRK05677 255 IAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLD-FSALKLTLS 333 (562)
T ss_pred EEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCC-hhhceEEEE
Confidence 9999999999986544444 4455555553 468899999999999999999999999998765433333 678999999
Q ss_pred cCCCCCHHHHHHhhhc-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccC
Q 008342 318 AGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVP 396 (569)
Q Consensus 318 ~g~~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~ 396 (569)
||+++++++.+++.+. ++++++.||+||+++++..+... ....+++|.|.+++ +++|+|++ +++++
T Consensus 334 gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~v~i~d~~-~~~~~ 400 (562)
T PRK05677 334 GGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQ-----------AIQVGTIGIPVPST-LCKVIDDD-GNELP 400 (562)
T ss_pred cCccCCHHHHHHHHHHcCCCeeccCCccccCcceeecCcc-----------CCCCCccCccCCCC-EEEEECCC-CCCCC
Confidence 9999999999998854 99999999999998766543211 11236799999999 69999986 88888
Q ss_pred CCCCceEEEEEecCcccccccCCcchhhhhhc-CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcC
Q 008342 397 ADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 475 (569)
Q Consensus 397 ~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 475 (569)
.| +.|||+++|+.++.||+++++.+...|. +|||+|||+|+++++|.+++.||.+|+|+++|.+|+|.+||+.|.++
T Consensus 401 ~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~ 478 (562)
T PRK05677 401 LG--EVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAAL 478 (562)
T ss_pred CC--CCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhC
Confidence 88 7899999999999999999999988885 89999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHH
Q 008342 476 PLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 554 (569)
Q Consensus 476 ~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (569)
|.|.+++|++.+++..++.+++++++.++... ..+++.+++++.|++|++|..+.+++ ||+|++||++|++|++
T Consensus 479 ~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~ 553 (562)
T PRK05677 479 PGVLQCAAIGVPDEKSGEAIKVFVVVKPGETL-----TKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRD 553 (562)
T ss_pred CCccEEEEEeccCccCCceEEEEEEeCCCCCC-----CHHHHHHHHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHH
Confidence 99999999999998888889999887755333 45789999999999999999999877 9999999999999998
Q ss_pred HHHhcC
Q 008342 555 KAKEMG 560 (569)
Q Consensus 555 ~~~~~~ 560 (569)
++..+.
T Consensus 554 ~~~~~~ 559 (562)
T PRK05677 554 EELKKA 559 (562)
T ss_pred HHHHhc
Confidence 776543
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-67 Score=555.34 Aligned_cols=504 Identities=26% Similarity=0.374 Sum_probs=421.2
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYG--SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
.+++.+++.+++.++|+++|+++. ++++||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 22 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~ 101 (537)
T PLN02246 22 HLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAV 101 (537)
T ss_pred CCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEE
Confidence 568999999999999999999875 478999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHH
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYE 176 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (569)
++|+++.++.+++..+++.++++++|++......+...... ....++.+++.. .....+.
T Consensus 102 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---------~~~~~i~~~~~~-----------~~~~~~~ 161 (537)
T PLN02246 102 TTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED---------DGVTVVTIDDPP-----------EGCLHFS 161 (537)
T ss_pred EecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc---------CCceEEEeCCCC-----------CCceeHH
Confidence 99999999999999999999999999988766555433210 112344444321 1123344
Q ss_pred hhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHh----HhCCCCCcEEEEcCCccchhhHH
Q 008342 177 KFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL----IWGMNEGAVFLWTLPMFHGNGWS 252 (569)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~ 252 (569)
++........+ .....++++++++|||||||.||+|.++|+++......... .+++.++|++++..|++|.+++.
T Consensus 162 ~~~~~~~~~~~-~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~ 240 (537)
T PLN02246 162 ELTQADENELP-EVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLN 240 (537)
T ss_pred HHhcCCCCCCC-CCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHH
Confidence 44433222221 12346789999999999999999999999999877655433 46788999999999999999986
Q ss_pred HHHH-HHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhh
Q 008342 253 YTWS-LAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS 331 (569)
Q Consensus 253 ~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~ 331 (569)
..+. .+..|+++++.+.+++..+++.|+++++|++.++|+++..|.+........ ++++|.+++||+++++++.+.+.
T Consensus 241 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~~~~ 319 (537)
T PLN02246 241 SVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYD-LSSIRMVLSGAAPLGKELEDAFR 319 (537)
T ss_pred HHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccC-ccceeEEEEecCcCCHHHHHHHH
Confidence 5544 455677777778889999999999999999999999999998765544444 78999999999999999999998
Q ss_pred hc--CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEec
Q 008342 332 QK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 409 (569)
Q Consensus 332 ~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~ 409 (569)
+. +..+++.||+||++++++.+..... .......+++|.|++++ +++++|++++++++.| +.|||+++|
T Consensus 320 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~Gel~v~g 390 (537)
T PLN02246 320 AKLPNAVLGQGYGMTEAGPVLAMCLAFAK------EPFPVKSGSCGTVVRNA-ELKIVDPETGASLPRN--QPGEICIRG 390 (537)
T ss_pred HHcCCCeEeccccccccCcccccccccCC------CCccccCCccccccCCc-EEEEecCCCCCcCCCC--CceEEEEEC
Confidence 54 7889999999999876554321100 00112236789999999 6999998889999988 789999999
Q ss_pred CcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecC
Q 008342 410 SCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488 (569)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 488 (569)
++++.||+++++.+...| .+|||+|||+|+++++|.+++.||.||+|+.+|.+|+|.+||+.|.++|.|.+++|++.++
T Consensus 391 ~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~ 470 (537)
T PLN02246 391 PQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKD 470 (537)
T ss_pred CchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccC
Confidence 999999999999988887 4899999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
...++.++++++..++... ..++|+++++++++.|++|..+.+++ ||+|++||++|++|++++.+
T Consensus 471 ~~~~~~~~~~v~~~~~~~~-----~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 471 EVAGEVPVAFVVRSNGSEI-----TEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred ccCCceeEEEEEeCCCCCC-----CHHHHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence 8888889999887765433 45789999999999999999888776 99999999999999988753
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-67 Score=552.62 Aligned_cols=520 Identities=30% Similarity=0.502 Sum_probs=423.6
Q ss_pred cccCHHHHHHHhhhhCCCceeeeeC--C--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhc
Q 008342 18 TALTPLWFINRAATLHPTRKSVVYG--S--KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMA 93 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~~~a~~~~--~--~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 93 (569)
-+.++.++|++++..+|++.++.+. + +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~ 87 (539)
T PRK07008 8 MPLLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGS 87 (539)
T ss_pred CCCCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 4458899999999999999888752 2 68999999999999999999999999999999999999999999999999
Q ss_pred CceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchh
Q 008342 94 GAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAI 173 (569)
Q Consensus 94 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (569)
|++++|+++.++.+++..+++.+++++++++.+....+.+...... ....++.+.+...... ......
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-----~~~~~~ 155 (539)
T PRK07008 88 GAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCP-------NVKGWVAMTDAAHLPA-----GSTPLL 155 (539)
T ss_pred CcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCC-------CceEEEEEccCCcccc-----CCcccc
Confidence 9999999999999999999999999999999877665544433322 2344444443221000 012245
Q ss_pred hHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHH--HhHhHhCCCCCcEEEEcCCccchhhH
Q 008342 174 EYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSL--NGALIWGMNEGAVFLWTLPMFHGNGW 251 (569)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~g~ 251 (569)
.+++++......... ....++++++++|||||||.||+|.+||.+++.... .....+++.++|++++..|++|.+++
T Consensus 156 ~~~~l~~~~~~~~~~-~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 234 (539)
T PRK07008 156 CYETLVGAQDGDYDW-PRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAW 234 (539)
T ss_pred cHHHHhcccCCCcCc-ccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhH
Confidence 666665443322221 234567899999999999999999999999865432 23346778899999999999998887
Q ss_pred HHHHHHHHhcceEEEe-ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHh
Q 008342 252 SYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAM 330 (569)
Q Consensus 252 ~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~ 330 (569)
...+..+..|+++++. ..+++..+++.++++++|++.++|+++..+++........ +++++.++++|+++++++.+++
T Consensus 235 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~ 313 (539)
T PRK07008 235 GLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLR-FSTLRRTVIGGSACPPAMIRTF 313 (539)
T ss_pred HHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCC-cccceEEEEcCCCCCHHHHHHH
Confidence 7666667778887776 4578999999999999999999999999998876554444 7899999999999999999999
Q ss_pred h-hcCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEec
Q 008342 331 S-QKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 409 (569)
Q Consensus 331 ~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~ 409 (569)
. .+++++++.||+||++..++.+.........+.........++|.|.+++ .++|+|++ +++++.++++.|||+++|
T Consensus 314 ~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~-~~~i~d~~-~~~~~~~~~~~Gei~v~g 391 (539)
T PRK07008 314 EDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGV-DMKIVGDD-GRELPWDGKAFGDLQVRG 391 (539)
T ss_pred HHHhCCceecccccccccccceecccccccccCCchhhhhhcccCCccccce-EEEEECCC-CCccCCCCCcceEEEEeC
Confidence 7 45999999999999997665543221111111111122346789999999 69999975 888876654689999999
Q ss_pred CcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCC
Q 008342 410 SCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489 (569)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 489 (569)
++++.||++++. ..+.+|||+|||++++++||++++.||.+|+|+.+|.+|+|.+||..|..+|.|.++++++.+++
T Consensus 392 ~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~ 468 (539)
T PRK07008 392 PWVIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHP 468 (539)
T ss_pred CccchhhcCChh---hhhcCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCc
Confidence 999999999873 34568999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCC
Q 008342 490 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP 561 (569)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~ 561 (569)
..++.++++++..++... ..+++.+++++++++|.+|..+++++ ||+|++||++|++|++++.+-..
T Consensus 469 ~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~~~~ 536 (539)
T PRK07008 469 KWDERPLLVVVKRPGAEV-----TREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRDYVL 536 (539)
T ss_pred hhccceEEEEEeCCCCcc-----CHHHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHhhcc
Confidence 888889998887765433 45789999999999999999998777 99999999999999999887543
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-67 Score=551.00 Aligned_cols=505 Identities=32% Similarity=0.495 Sum_probs=428.0
Q ss_pred cccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 18 TALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
..+++.++|++.++.+|+++|+.+.++++||+||.+.+.++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 3 ~~~~i~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~ 82 (513)
T PRK07656 3 EWMTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVV 82 (513)
T ss_pred ccccHHHHHHHHHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHh
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEK 177 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (569)
+|+++.++.+.+..++++++++++++++............+. ....++.+....... ......+|++
T Consensus 83 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~~~ 149 (513)
T PRK07656 83 VPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLP-------ALEHVVICETEEDDP------HTEKMKTFTD 149 (513)
T ss_pred EecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccC-------CccEEEEEcCccccc------CccccccHHH
Confidence 999999999999999999999999999887665544332222 234444444332110 0012245666
Q ss_pred hhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHH
Q 008342 178 FLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSL 257 (569)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 257 (569)
++...... .......++++++++|||||||.||+|.++|.++..........+++++++++++.+|++|.+++...+..
T Consensus 150 ~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (513)
T PRK07656 150 FLAAGDPA-ERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNA 228 (513)
T ss_pred HHhcCCCC-CCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHH
Confidence 65543321 12233577899999999999999999999999999888888888899999999999999999998765544
Q ss_pred -HHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhh-hcCC
Q 008342 258 -AALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGF 335 (569)
Q Consensus 258 -~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~~~ 335 (569)
+..|+++++...+++..+++.|+++++|++.++|+++..+.+........ ++++|.+++||+++++++.+++. .++.
T Consensus 229 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~l~~v~~~g~~~~~~~~~~~~~~~~~ 307 (513)
T PRK07656 229 PLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAED-LSSLRLAVTGAASMPVALLERFESELGV 307 (513)
T ss_pred HHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCC-ccceeeEEecCCCCCHHHHHHHHHHcCC
Confidence 45566665656788999999999999999999999999999886655444 88999999999999999999988 4587
Q ss_pred -eEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccc
Q 008342 336 -RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK 414 (569)
Q Consensus 336 -~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 414 (569)
++++.||+||++++++.+...... .....++|.|.+++ .++|+|++ +++++.| +.|||+++|+.++.
T Consensus 308 ~~~~~~YG~tE~~~~~~~~~~~~~~--------~~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~ 375 (513)
T PRK07656 308 DIVLTGYGLSEASGVTTFNRLDDDR--------KTVAGTIGTAIAGV-ENKIVNEL-GEEVPVG--EVGELLVRGPNVMK 375 (513)
T ss_pred CceEeEEccccCCCceeecCccccc--------cccCCCccccCCCc-EEEEECCC-CCCCCCC--CceEEEEEcchhhh
Confidence 899999999998887766532211 01136899999999 69999976 8888877 78999999999999
Q ss_pred cccCCcchhhhhhc-CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCc
Q 008342 415 GYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493 (569)
Q Consensus 415 gy~~~~~~~~~~~~-~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~ 493 (569)
||++++..+...+. +|||+|||+|+++++|.++++||.||+++++|.++++.+||+.|.++++|.+++|++.+++..|+
T Consensus 376 gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~ 455 (513)
T PRK07656 376 GYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGE 455 (513)
T ss_pred hhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCc
Confidence 99999988888886 89999999999999999999999999999999999999999999999999999999998888888
Q ss_pred eeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHH
Q 008342 494 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 554 (569)
Q Consensus 494 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (569)
.+.++++..+.... ..+++.+++++.|+.+++|..+.+++ ||+|++||++|+.|++
T Consensus 456 ~~~~~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 456 VGKAYVVLKPGAEL-----TEEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred eEEEEEEECCCCCC-----CHHHHHHHHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence 89999988754333 45789999999999999999998777 9999999999999974
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-67 Score=557.81 Aligned_cols=507 Identities=25% Similarity=0.326 Sum_probs=410.8
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCC--eeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGS--KHYTWHQTYRRCRRFASALSK-LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~-~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
.++.+.+... ..+|+++|+++.. .++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||+++|++
T Consensus 40 ~~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v 118 (560)
T PLN02574 40 LDAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGI 118 (560)
T ss_pred CCHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeE
Confidence 4444444443 5799999999864 379999999999999999998 99999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHH
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYE 176 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (569)
++|++|.++.+++.++++.++++++|++.+....+.. . ...++.+.+...... .......|.
T Consensus 119 ~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----~---------~~~~~~~~~~~~~~~-----~~~~~~~~~ 180 (560)
T PLN02574 119 VTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSP----L---------GVPVIGVPENYDFDS-----KRIEFPKFY 180 (560)
T ss_pred EeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHh----c---------CCcEEecCccccccc-----CccCcccHH
Confidence 9999999999999999999999999998765443321 1 112333321100000 001123445
Q ss_pred hhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHh----HhC-CCCCcEEEEcCCccchhhH
Q 008342 177 KFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL----IWG-MNEGAVFLWTLPMFHGNGW 251 (569)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~----~~~-~~~~d~~~~~~p~~~~~g~ 251 (569)
+++....... ......++++++++|||||||.||+|.+||+++...+..... .+. ...+++++..+|++|.+|+
T Consensus 181 ~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~ 259 (560)
T PLN02574 181 ELIKEDFDFV-PKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGL 259 (560)
T ss_pred HHhhcCCccc-ccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHH
Confidence 5444432221 122345789999999999999999999999998877665433 122 2356888999999999998
Q ss_pred HHHHHHH-HhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHh
Q 008342 252 SYTWSLA-ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAM 330 (569)
Q Consensus 252 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~ 330 (569)
...+... ..|++.++...+++..+++.|+++++|++.++|+++..|.+.........++++|.+++||+++++++.+++
T Consensus 260 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~ 339 (560)
T PLN02574 260 SLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDF 339 (560)
T ss_pred HHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHH
Confidence 7655544 457777777888999999999999999999999999999887543222227899999999999999999998
Q ss_pred hh-c-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEe
Q 008342 331 SQ-K-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMR 408 (569)
Q Consensus 331 ~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~ 408 (569)
.+ + ++++++.||+||++.+.+..... ......+++|.+.+++ +++|+|++++++++.| +.|||+++
T Consensus 340 ~~~~~~~~v~~~YG~tE~~~~~~~~~~~---------~~~~~~~~vG~~~~~~-~v~i~d~~~g~~~~~g--~~Gei~v~ 407 (560)
T PLN02574 340 VQTLPHVDFIQGYGMTESTAVGTRGFNT---------EKLSKYSSVGLLAPNM-QAKVVDWSTGCLLPPG--NCGELWIQ 407 (560)
T ss_pred HHHCCCCcEEecccccccCceeecCCCc---------cccCCCCceeeeCCCc-EEEEEeCCCCcCCCCC--CCeEEEEE
Confidence 74 4 78999999999998654322111 0112347899999999 6999998889999988 78999999
Q ss_pred cCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeec
Q 008342 409 GSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487 (569)
Q Consensus 409 ~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 487 (569)
|++++.||+++++.+...| .+|||+|||+|+++++|.+++.||.+|+|+++|++|++.+||++|.+||.|.+++|++.+
T Consensus 408 g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~ 487 (560)
T PLN02574 408 GPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVP 487 (560)
T ss_pred CcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccc
Confidence 9999999999999988877 489999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCCcc
Q 008342 488 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPVK 563 (569)
Q Consensus 488 ~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~~ 563 (569)
++..|+.++++++..++... ..+++.++++++|+.|++|..+.+++ ||+|++||++|+.|++++.+..+.|
T Consensus 488 ~~~~g~~~~a~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~~~~~ 559 (560)
T PLN02574 488 DKECGEIPVAFVVRRQGSTL-----SQEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNSVSSR 559 (560)
T ss_pred cCCCCcceEEEEEeCCCCCC-----CHHHHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhccccC
Confidence 98888989999987765433 44789999999999999999888776 9999999999999999998877655
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-67 Score=561.66 Aligned_cols=505 Identities=18% Similarity=0.202 Sum_probs=394.5
Q ss_pred HHhhhhCCCceeeeeCC-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeecc
Q 008342 27 NRAATLHPTRKSVVYGS-----KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSIN 101 (569)
Q Consensus 27 ~~~a~~~p~~~a~~~~~-----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~ 101 (569)
+...+.+++++|+++.+ +++||+||.+++.++|++|.++|+++||+|+++++|++++++++|||+++|++++|++
T Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~ 170 (652)
T TIGR01217 91 ENLLRAAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCS 170 (652)
T ss_pred HHHhccCCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecC
Confidence 33333467899988743 5899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHhcCCceEEEEcccc---------hHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcch
Q 008342 102 IRLNATVVAFILSHASSAVVIVDQEF---------FSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGA 172 (569)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (569)
+.++.+++.+++++++|+++|+++.. .+.+.++.+.++ ....++.+.......... ....+.
T Consensus 171 ~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~--~~~~~~ 241 (652)
T TIGR01217 171 PDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELP-------TLRAVVHIPYLGPRETEA--PKIDGA 241 (652)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCC-------CccEEEEEeCCCCccccc--ccccCc
Confidence 99999999999999999999998753 233333333222 234555554321100000 001123
Q ss_pred hhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHH-HHHhHhHhCCCCCcEEEEcCCccchhhH
Q 008342 173 IEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLM-SLNGALIWGMNEGAVFLWTLPMFHGNGW 251 (569)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~-~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 251 (569)
..|++++...............+++++|+|||||||.||+|+++|.+++.. .......++++++|++++..|+.|+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~- 320 (652)
T TIGR01217 242 LDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW- 320 (652)
T ss_pred ccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-
Confidence 557776654221111112345689999999999999999999999986543 344445678899999999999988753
Q ss_pred HHHHHHHHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccCC--CCCCCCcccceeeeecCCCCCHH
Q 008342 252 SYTWSLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASP--EDTILPLTNVVNVNTAGAPPPPS 325 (569)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~~l~~l~~~~~~g~~l~~~ 325 (569)
.+.+.+++.|+++++... .++..++++++++++|++...|.++..+..... ....+ +++||.+++||++++++
T Consensus 321 ~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~-l~sLr~i~~gGe~l~~~ 399 (652)
T TIGR01217 321 NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHD-LSALQCVASTGSPLPPD 399 (652)
T ss_pred HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCC-hhheeEEEeecCCCCHH
Confidence 334566677888877742 367899999999999999888888777765421 12233 89999999999999999
Q ss_pred HHHHhhh-c--CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCce
Q 008342 326 LLFAMSQ-K--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTI 402 (569)
Q Consensus 326 ~~~~~~~-~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~ 402 (569)
+.+++.+ + +..+.+.||+||+++....... ......+++|.|.+++ +++|+|++ |++++ | +.
T Consensus 400 ~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~----------~~~~~~g~~g~p~~g~-~v~ivd~~-g~~~~-g--~~ 464 (652)
T TIGR01217 400 GFRWVYDEIKADVWLASISGGTDICSCFAGANP----------TLPVHIGEIQAPGLGT-AVQSWDPE-GKPVT-G--EV 464 (652)
T ss_pred HHHHHHHHhCCCceEEeccCHHHHhccccCCCC----------CCCCcCCccCCCcCCC-ceEEECCC-CCCCC-C--Cc
Confidence 9988874 3 3567899999997543322110 0112236788999999 69999986 77774 4 78
Q ss_pred EEEEEecC--cccccccCCcchhh---hhhc--CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcC
Q 008342 403 GEIVMRGS--CVMKGYLKNPKANE---EAFA--NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 475 (569)
Q Consensus 403 Gel~v~~~--~~~~gy~~~~~~~~---~~~~--~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 475 (569)
|||+++|+ .++.|||++++.+. ..|. +|||+|||+|++|+||+++++||.||+|+++|++|+|.|||++|.+|
T Consensus 465 GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~ 544 (652)
T TIGR01217 465 GELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERL 544 (652)
T ss_pred cEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhC
Confidence 99999996 58899999987553 2222 68999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHH
Q 008342 476 PLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 554 (569)
Q Consensus 476 ~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (569)
|.|.+++|++.+++..|+.++++|++.++... .+...++|+++++++|+.|++|..+.+++ ||+|++||++|+.|++
T Consensus 545 p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~--~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~ 622 (652)
T TIGR01217 545 DEVRESLCIGQEQPDGGYRVVLFVHLAPGATL--DDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKR 622 (652)
T ss_pred CCcceEEEEeeecCCCCEEEEEEEEECCCCCC--CHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHH
Confidence 99999999999999999999999998876432 12256789999999999999999999887 9999999999999999
Q ss_pred HHHhc
Q 008342 555 KAKEM 559 (569)
Q Consensus 555 ~~~~~ 559 (569)
.++..
T Consensus 623 ~~~~~ 627 (652)
T TIGR01217 623 VLQGT 627 (652)
T ss_pred HHcCC
Confidence 87644
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=566.50 Aligned_cols=518 Identities=21% Similarity=0.262 Sum_probs=395.9
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeC-------C--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHH
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYG-------S--KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFG 89 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~-------~--~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA 89 (569)
-.|++++|++.++++|+++|+... + +.+||+||.++++++|++|.++|+++||+|+|+++|+++|++++||
T Consensus 42 ~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA 121 (660)
T PLN02861 42 IDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (660)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 358999999999999999999641 1 4799999999999999999999999999999999999999999999
Q ss_pred hhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhh
Q 008342 90 APMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALA 169 (569)
Q Consensus 90 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (569)
|+++|++++|+++.++.+++.+++++++++++|++.+....+.......+ .....++.+++.............
T Consensus 122 ~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~------~~l~~ii~~~~~~~~~~~~~~~~~ 195 (660)
T PLN02861 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCS------SNLKTIVSFGDVSSEQKEEAEELG 195 (660)
T ss_pred HHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCC------CCCEEEEEECCCChhhhhhhhcCC
Confidence 99999999999999999999999999999999998765443333222111 024556666542110000000001
Q ss_pred cchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhC-----CCCCcEEEEcCC
Q 008342 170 RGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG-----MNEGAVFLWTLP 244 (569)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~-----~~~~d~~~~~~p 244 (569)
....+|.+++....... ...+..++++++|+|||||||.||||++||++++.........++ +.++|++++.+|
T Consensus 196 ~~~~~~~~~~~~~~~~~-~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lP 274 (660)
T PLN02861 196 VSCFSWEEFSLMGSLDC-ELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLP 274 (660)
T ss_pred cEEEEHHHHHHhCcccC-CCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECc
Confidence 12345666654432211 112346789999999999999999999999999888766554443 468899999999
Q ss_pred ccchhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccC-----------------------
Q 008342 245 MFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANAS----------------------- 301 (569)
Q Consensus 245 ~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~----------------------- 301 (569)
++|.+++...+.++..|+++++. .+++..+++.|++++||+++++|++++.+.+..
T Consensus 275 l~H~~~~~~~~~~l~~G~~v~~~-~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~ 353 (660)
T PLN02861 275 LAHVYDQVIETYCISKGASIGFW-QGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKL 353 (660)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEe-CCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 99999987666666666666555 568899999999999999999999999886410
Q ss_pred -------C----CCCCC---------Cc-ccceeeeecCCCCCHHHHHHhhhcC-CeEecccccccCCCCccccccCCCC
Q 008342 302 -------P----EDTIL---------PL-TNVVNVNTAGAPPPPSLLFAMSQKG-FRITHTYGLTELTGPASVCAWKPEW 359 (569)
Q Consensus 302 -------~----~~~~~---------~l-~~l~~~~~~g~~l~~~~~~~~~~~~-~~i~~~YG~tE~~~~~~~~~~~~~~ 359 (569)
. ..... .+ .++|.+++||+++++++.+.++..+ .++++.||+||+++.++......
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-- 431 (660)
T PLN02861 354 GNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIANV-- 431 (660)
T ss_pred HHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHcCCCeeEecchhhhhhceeeccccc--
Confidence 0 00000 01 5789999999999999866554555 47999999999986554322110
Q ss_pred CCCCchhhhhccccCCceeeccCCceeeeC-CCC-cccCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeecCce
Q 008342 360 DSLPFETQARLNARQGVRTICLDGLDVIDA-RTN-QPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDL 437 (569)
Q Consensus 360 ~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~-~~~-~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~ 437 (569)
....+++|.|++++ +++|+|. +.| ...+.+ +.|||+++|++++.|||++++.+.+.|.+|||+|||+
T Consensus 432 --------~~~~gsvG~p~p~~-ev~i~d~~~~g~~~~~~~--~~GEi~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDl 500 (660)
T PLN02861 432 --------FSMVGTVGVPMTTI-EARLESVPEMGYDALSDV--PRGEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDI 500 (660)
T ss_pred --------CCCCCCccCccCce-EEEEEEccccCcccCCCC--CceeEEEcCCcccccccCCHHHHHhhhhccCcccCce
Confidence 11247899999999 6999983 323 222322 5799999999999999999999999999999999999
Q ss_pred eEEcCCCeEEEecccCceEEe-CceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcch---------
Q 008342 438 AVKHPDNYIEIKDRLKDVIIS-GGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE--------- 507 (569)
Q Consensus 438 ~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~--------- 507 (569)
|++|+||+++|.||.||+|+. +|++|+|.+||++|.+||.|.+++|++.+. ++.++|+|++....-.
T Consensus 501 g~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~---~~~~~A~vv~~~~~l~~~~~~~~~~ 577 (660)
T PLN02861 501 GEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF---ESFLVAVVVPDRQALEDWAANNNKT 577 (660)
T ss_pred EEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC---cceeEEEEEcCHHHHHHHHHHcCCC
Confidence 999999999999999999995 899999999999999999999999999763 3568888887643100
Q ss_pred hhhh------hHHHHHHHHHHh-----cCCCCcCCceEEecc--C-----CCCCCCcccHHHHHHHHHhcC
Q 008342 508 LDKG------KLAEDVSKFCRA-----KMPSYWVPKSVVFAA--L-----PKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 508 ~~~~------~~~~~l~~~~~~-----~l~~~~~p~~i~~~~--l-----P~t~~GKi~r~~l~~~~~~~~ 560 (569)
.+.. .....+.+.+++ .++.+.+++.+.+.+ + .+|+++|+.|+.+.+.|.++-
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I 648 (660)
T PLN02861 578 GDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCI 648 (660)
T ss_pred CCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHH
Confidence 0000 122334444443 488999999988754 6 799999999999999998653
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-67 Score=546.62 Aligned_cols=480 Identities=19% Similarity=0.286 Sum_probs=409.3
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEee
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNS 99 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 99 (569)
|++.++|+++++++|+++|+.+.+.++||.||.++++++|++|.+.|. +|++|+|+++|++++++++|||+++|++++|
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 79 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVP 79 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence 678999999999999999999999999999999999999999999884 7999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhh
Q 008342 100 INIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFL 179 (569)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (569)
+++.++.+++.++++.++++++|++......+.. ....++.+++ +.+.+
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-------------~~~~~~~~~~------------------~~~~~ 128 (487)
T PRK07638 80 LDIKWKQDELKERLAISNADMIVTERYKLNDLPD-------------EEGRVIEIDE------------------WKRMI 128 (487)
T ss_pred cCccCCHHHHHHHHHhCCCCEEEEecccccchhh-------------ccceEEEehh------------------hhhhh
Confidence 9999999999999999999999998765433321 1122332221 11111
Q ss_pred hcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHH
Q 008342 180 ETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 259 (569)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~ 259 (569)
....+... ......+++++|+|||||||.||+|.++|++++.........+++.++|+++...|++|..++...+..+.
T Consensus 129 ~~~~~~~~-~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~ 207 (487)
T PRK07638 129 EKYLPTYA-PIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLY 207 (487)
T ss_pred hhcccccc-ccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHc
Confidence 11111111 11234567899999999999999999999999988888888889999999999999999988877777788
Q ss_pred hcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc--CCeE
Q 008342 260 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRI 337 (569)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~--~~~i 337 (569)
.|+++++.+.+++..+++.++++++|++.++|+++..+.+.... ..+.+.++++|+++++++.+++.+. ++++
T Consensus 208 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 282 (487)
T PRK07638 208 VGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENRV-----IENKMKIISSGAKWEAEAKEKIKNIFPYAKL 282 (487)
T ss_pred cCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcCc-----CCceeEEEEcCCCCCHHHHHHHHHHcCCCeE
Confidence 89888888889999999999999999999999999999887321 3456678889999999999998854 7899
Q ss_pred ecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccccccc
Q 008342 338 THTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYL 417 (569)
Q Consensus 338 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~ 417 (569)
++.||+||++..+..+... ......++|.|++++ .++|+|++ +.+++.| +.|||+++|+.++.||+
T Consensus 283 ~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~Gel~v~~~~~~~gy~ 348 (487)
T PRK07638 283 YEFYGASELSFVTALVDEE----------SERRPNSVGRPFHNV-QVRICNEA-GEEVQKG--EIGTVYVKSPQFFMGYI 348 (487)
T ss_pred EEEecCCccCceEEecccc----------cCCCCCCCCcccCCc-EEEEECCC-CCCCCCC--CCeEEEEecccceeeec
Confidence 9999999998655443211 112346889999999 69999986 8888887 78999999999999999
Q ss_pred CCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeE
Q 008342 418 KNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497 (569)
Q Consensus 418 ~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~ 497 (569)
+++..+...+.+|||+|||+++++++|++++.||.+|+|+++|.+|+|.+||++|.++|.|.+++|++.+++..|+.+.+
T Consensus 349 ~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~ 428 (487)
T PRK07638 349 IGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVA 428 (487)
T ss_pred CCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEE
Confidence 99988887788999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred EEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 498 ~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
+++.. . ..+++.+++++.++.|++|..+++++ ||+|++||++|++|++++.++.
T Consensus 429 ~v~~~----~-----~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~ 483 (487)
T PRK07638 429 IIKGS----A-----TKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQE 483 (487)
T ss_pred EEECC----C-----CHHHHHHHHHHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhccc
Confidence 87631 1 45789999999999999999999876 9999999999999999987654
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=559.04 Aligned_cols=515 Identities=18% Similarity=0.230 Sum_probs=401.4
Q ss_pred cCHH-HHHHHhhhhCCCceeeeeCC--------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHh
Q 008342 20 LTPL-WFINRAATLHPTRKSVVYGS--------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGA 90 (569)
Q Consensus 20 ~~l~-~~l~~~a~~~p~~~a~~~~~--------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~ 90 (569)
.++. ++|++++.++|+++|+++.+ +++||+||.+++.++|++|.++|+++||+|+++++|++++++++|||
T Consensus 174 ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~ 253 (728)
T PLN03052 174 LNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAI 253 (728)
T ss_pred eEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 4443 46777766789999999864 37999999999999999999999999999999999999999999999
Q ss_pred hhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccch------HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhh
Q 008342 91 PMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQL 164 (569)
Q Consensus 91 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (569)
+++|++++|+++.++.+++.+++++++++++|+++... +....+.... ...++++....... ..
T Consensus 254 ~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~---------~~~~iv~~~~~~~~-~~ 323 (728)
T PLN03052 254 ILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAK---------APKAIVLPADGKSV-RV 323 (728)
T ss_pred HHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhc---------CCcEEEEeCCCCcc-cc
Confidence 99999999999999999999999999999999987542 1122221111 12344443211100 00
Q ss_pred HHhhhcchhhHHhhhhcCCCC---CCC-CCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEE
Q 008342 165 EYALARGAIEYEKFLETGDPE---FAW-KPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFL 240 (569)
Q Consensus 165 ~~~~~~~~~~~~~~l~~~~~~---~~~-~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~ 240 (569)
........|++++...... ... ......+++++|+|||||||.||+|+++|.+++.........++++++|+++
T Consensus 324 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~ 401 (728)
T PLN03052 324 --KLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVC 401 (728)
T ss_pred --ccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEE
Confidence 0011235677766543211 111 1123568999999999999999999999999877666555567889999999
Q ss_pred EcCCccchhhHHHHHHHHHhcceEEEecc-CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecC
Q 008342 241 WTLPMFHGNGWSYTWSLAALCGTSICLRQ-VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAG 319 (569)
Q Consensus 241 ~~~p~~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g 319 (569)
+..|+.|+++....+..++.|+++++... +++..++++++++++|++.++|+++..+.+.......+ +++||.++++|
T Consensus 402 ~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~d-lssLr~i~s~G 480 (728)
T PLN03052 402 WPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLD-WSSIRCFGSTG 480 (728)
T ss_pred ECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCC-hhheeEEEecC
Confidence 99999999998766677778888888753 56678999999999999999999999998765433344 89999999999
Q ss_pred CCCCHHHHHHhhhc-C-CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCC
Q 008342 320 APPPPSLLFAMSQK-G-FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPA 397 (569)
Q Consensus 320 ~~l~~~~~~~~~~~-~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~ 397 (569)
++++++...++.+. + .++.+.||+||+++.+...... .....+++|.|.+++ +++|+|++ |++++.
T Consensus 481 e~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~----------~~~~~g~~g~p~~g~-~v~v~d~~-g~~v~~ 548 (728)
T PLN03052 481 EASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLL----------QPQAFAAFSTPAMGC-KLFILDDS-GNPYPD 548 (728)
T ss_pred CCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCC----------CCCCCCccccCCCCc-eEEEECCC-CCCCCC
Confidence 99999988777643 4 5799999999998654432210 112347899999999 69999976 899987
Q ss_pred CCCceEEEEEecCc--ccccccCCcchhhhhhc-----CC--eeecCceeEEcCCCeEEEecccCceEEeCceeechHHH
Q 008342 398 DGKTIGEIVMRGSC--VMKGYLKNPKANEEAFA-----NG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEV 468 (569)
Q Consensus 398 ~~~~~Gel~v~~~~--~~~gy~~~~~~~~~~~~-----~g--~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~i 468 (569)
|..+.|||++.++. ...+|+++.. ....|. .| ||+|||+++++++|+++++||+||+|+++|.+|.+.||
T Consensus 549 g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EI 627 (728)
T PLN03052 549 DAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEI 627 (728)
T ss_pred CCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHH
Confidence 63236999998653 3345665532 222231 23 89999999999999999999999999999999999999
Q ss_pred HHHHh-cCCCceeeEEEeecCCCCC-ceeeEEEEec--CCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCC
Q 008342 469 EKVLY-LHPLVLEAAVVARPDERWG-ESPCAFVTLK--PEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSA 543 (569)
Q Consensus 469 E~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~--~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~ 543 (569)
|++|. .||.|.+++|++.+++..| +.+++||++. ++.. .+.+++.+.+.+.++++|+++.+|..|++++ ||+|+
T Consensus 628 E~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~-~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~ 706 (728)
T PLN03052 628 ERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSN-PDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTA 706 (728)
T ss_pred HHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCC-CCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCC
Confidence 99995 7899999999999988766 8899999987 3322 2233467788888999999999999988877 99999
Q ss_pred CCcccHHHHHHHHHhcCC
Q 008342 544 TGKIQKHLLRAKAKEMGP 561 (569)
Q Consensus 544 ~GKi~r~~l~~~~~~~~~ 561 (569)
+||++|+.|++.+.+...
T Consensus 707 sGKi~Rr~Lr~~~~~~~~ 724 (728)
T PLN03052 707 SNKVMRRVLRQQLAQELS 724 (728)
T ss_pred chHHHHHHHHHHHHhhhh
Confidence 999999999999877654
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=549.90 Aligned_cols=511 Identities=28% Similarity=0.422 Sum_probs=431.9
Q ss_pred cccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 18 TALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
..+++.+.+++++..+|+++|+.+.++.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 15 ~~~n~~~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~ 94 (542)
T PRK07786 15 RRQNWVNQLARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIA 94 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHh
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEK 177 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (569)
+|+++.++.+++..+++.+++++++++..............+ ....++.+++.. ..+..++++
T Consensus 95 vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----------~~~~~~~~~ 157 (542)
T PRK07786 95 VPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVP-------LLSTVVVAGGSS----------DDSVLGYED 157 (542)
T ss_pred EEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccC-------ccceEEEecCCC----------cccccCHHH
Confidence 999999999999999999999999999876655443322222 234455554321 112245556
Q ss_pred hhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCC-CCCcEEEEcCCccchhhHHHHHH
Q 008342 178 FLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGM-NEGAVFLWTLPMFHGNGWSYTWS 256 (569)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~ 256 (569)
++....... .......+++++++|||||||.||+|.++|+++..........+++ ..++++++..|++|.+|+...+.
T Consensus 158 ~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 236 (542)
T PRK07786 158 LLAEAGPAH-APVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLP 236 (542)
T ss_pred HhhccCCCC-CCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHH
Confidence 554433222 1223456789999999999999999999999998888777777776 67899999999999999987777
Q ss_pred HHHhcceEEEec--cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc-
Q 008342 257 LAALCGTSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK- 333 (569)
Q Consensus 257 ~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~- 333 (569)
.+..|+++++.+ .+++..+++.++++++|++.++|+++..+......... ..++|.+++||+++++++.+++.+.
T Consensus 237 ~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~--~~~lr~i~~gg~~~~~~~~~~~~~~~ 314 (542)
T PRK07786 237 GLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPR--DLALRVLSWGAAPASDTLLRQMAATF 314 (542)
T ss_pred HHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCcc--CcceEEEEECCCCCCHHHHHHHHHHc
Confidence 788888888764 57899999999999999999999999999877544332 2368999999999999999998854
Q ss_pred -CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcc
Q 008342 334 -GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV 412 (569)
Q Consensus 334 -~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 412 (569)
+.++++.||+||++++.+.+.... ......++|.|++++ .++|+|++ +..++.+ +.|||+++|+.+
T Consensus 315 ~~~~l~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~ 381 (542)
T PRK07786 315 PEAQILAAFGQTEMSPVTCMLLGED---------AIRKLGSVGKVIPTV-AARVVDEN-MNDVPVG--EVGEIVYRAPTL 381 (542)
T ss_pred CCCeEEeeecccccccceEecCccc---------ccccCCCccccCCCc-eEEEECCC-CCCCcCC--CceEEEEEChhh
Confidence 889999999999987655432111 112336789999999 69999965 7888877 789999999999
Q ss_pred cccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCC
Q 008342 413 MKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 492 (569)
Q Consensus 413 ~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g 492 (569)
+.||+++++.+...|.+|||+|||+++++++|.+++.||.+|+|+++|.++++.+||.+|.++|.|.+++|++.+++..+
T Consensus 382 ~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~ 461 (542)
T PRK07786 382 MSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWG 461 (542)
T ss_pred hhhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888878
Q ss_pred ceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCCcccc
Q 008342 493 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPVKMI 565 (569)
Q Consensus 493 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~~~~ 565 (569)
+.+.++++..+..... ..+++.++++++++.|++|..+.+++ ||+|++||++|++|++++.+..+.+..
T Consensus 462 ~~~~~~v~~~~~~~~~----~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~~~~~ 531 (542)
T PRK07786 462 EVPVAVAAVRNDDAAL----TLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGACVNVERR 531 (542)
T ss_pred ceEEEEEEECCCCCCC----CHHHHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhhhchhhc
Confidence 8888888877553221 45789999999999999999999777 999999999999999999988776543
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=561.12 Aligned_cols=511 Identities=19% Similarity=0.241 Sum_probs=402.8
Q ss_pred CHHHHHHHhhhhCCCceeeeeCC-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 21 TPLWFINRAATLHPTRKSVVYGS-----KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 21 ~l~~~l~~~a~~~p~~~a~~~~~-----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
++.+.+.++ .+|+++|+++.+ +++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 87 n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Ga 164 (655)
T PRK03584 87 NYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGA 164 (655)
T ss_pred eHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Confidence 444444332 589999999854 6899999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccch---------HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHH
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEY 166 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (569)
+++|+++.++.+++.+++++++++++|+++... ..+.++...++ ...+++.+....... ..
T Consensus 165 v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~---~~ 234 (655)
T PRK03584 165 IWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP-------SLEHVVVVPYLGPAA---AA 234 (655)
T ss_pred EEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCC-------CccEEEEEecCCCcc---cc
Confidence 999999999999999999999999999987532 22222222222 234555554321100 00
Q ss_pred hhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHH-HHHhHhHhCCCCCcEEEEcCCc
Q 008342 167 ALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLM-SLNGALIWGMNEGAVFLWTLPM 245 (569)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~-~~~~~~~~~~~~~d~~~~~~p~ 245 (569)
........|++++...............+++++|+|||||||.||+|+++|.+++.. .......+++.++|++++..++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 314 (655)
T PRK03584 235 AALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTC 314 (655)
T ss_pred cccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCc
Confidence 011234556666652222111122346789999999999999999999999987644 4445556789999999999998
Q ss_pred cchhhHHHHHHHHHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCcccceeeeecC
Q 008342 246 FHGNGWSYTWSLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAG 319 (569)
Q Consensus 246 ~~~~g~~~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~~~~~g 319 (569)
.|+.+. +.+..++.|+++++... +++..++++++++++|++.++|+++..+.+.... .... +++||.++++|
T Consensus 315 ~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~sLr~i~~~G 392 (655)
T PRK03584 315 GWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHD-LSALRTIGSTG 392 (655)
T ss_pred hHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCC-hhheEEEEEec
Confidence 887543 34556677888777642 5789999999999999999999999998765321 2223 78999999999
Q ss_pred CCCCHHHHHHhhhc---CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccC
Q 008342 320 APPPPSLLFAMSQK---GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVP 396 (569)
Q Consensus 320 ~~l~~~~~~~~~~~---~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~ 396 (569)
+++++++.+++.+. +.++++.||+||+++....... ......+++|.|.+++ +++|+|++ |+++
T Consensus 393 e~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~----------~~~~~~g~~g~p~~g~-~~~ivd~~-g~~~- 459 (655)
T PRK03584 393 SPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNP----------LLPVYRGEIQCRGLGM-AVEAWDED-GRPV- 459 (655)
T ss_pred CCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCC----------CCCcCCCccCCCcCCc-eeEEECCC-CCCC-
Confidence 99999999998743 5789999999998653322110 0112347789999999 69999976 7777
Q ss_pred CCCCceEEEEEecC--cccccccCCcchhh--hh-h--cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHH
Q 008342 397 ADGKTIGEIVMRGS--CVMKGYLKNPKANE--EA-F--ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVE 469 (569)
Q Consensus 397 ~~~~~~Gel~v~~~--~~~~gy~~~~~~~~--~~-~--~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE 469 (569)
.+ +.|||+++|+ +++.|||++++.+. .. | .+|||+|||+|++|+||+++++||.||+|+++|.+|+|.|||
T Consensus 460 ~g--~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE 537 (655)
T PRK03584 460 VG--EVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIY 537 (655)
T ss_pred CC--CceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHH
Confidence 45 7899999996 78899999887543 11 2 268999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCccc
Q 008342 470 KVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQ 548 (569)
Q Consensus 470 ~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~ 548 (569)
++|.+||.|.+|+|++.+++..|+.++++|++.++... .+...++|.++++++|+.|++|..+++++ ||+|++||++
T Consensus 538 ~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~--~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~ 615 (655)
T PRK03584 538 RQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTL--DDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKV 615 (655)
T ss_pred HHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCC--cHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccch
Confidence 99999999999999999998889999999998876432 12255789999999999999999999887 9999999999
Q ss_pred HHHHHHHHHhcCCc
Q 008342 549 KHLLRAKAKEMGPV 562 (569)
Q Consensus 549 r~~l~~~~~~~~~~ 562 (569)
|+.|++++......
T Consensus 616 r~~lr~~~~~~~~~ 629 (655)
T PRK03584 616 ELPVKKLLHGRPVK 629 (655)
T ss_pred HHHHHHHHcCCCCC
Confidence 99999998765433
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-66 Score=545.61 Aligned_cols=509 Identities=29% Similarity=0.430 Sum_probs=430.6
Q ss_pred cccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 18 TALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
...++.++|.+.++++|+++|+++.++.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 9 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~ 88 (523)
T PRK08316 9 RRQTIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVH 88 (523)
T ss_pred cCCCHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHh
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEK 177 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (569)
+|+++.++.+++.++++.++++++|++.+....+........ ...+......... ........+.+
T Consensus 89 v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~------~~~~~~~~~~~ 154 (523)
T PRK08316 89 VPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP--------VDTLILSLVLGGR------EAPGGWLDFAD 154 (523)
T ss_pred EecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC--------ccceeeeeccccc------ccccchhhHHH
Confidence 999999999999999999999999999887666554332211 0111110000000 01122345555
Q ss_pred hhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHH
Q 008342 178 FLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSL 257 (569)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 257 (569)
+....... ........+++++++|||||||.||+|.+||.+++.........+++.++++++..+|++|..|+...+..
T Consensus 155 ~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~ 233 (523)
T PRK08316 155 WAEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGP 233 (523)
T ss_pred HHhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHH
Confidence 54433222 12233567899999999999999999999999999888877788899999999999999999998665544
Q ss_pred -HHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc--C
Q 008342 258 -AALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--G 334 (569)
Q Consensus 258 -~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~--~ 334 (569)
...|+++++.+..++..+++.++++++|++.++|+++..+.+........ ++++|.+++||+.+++++.+.+.+. +
T Consensus 234 ~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~gg~~~~~~~~~~~~~~~~~ 312 (523)
T PRK08316 234 YLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRD-LSSLRKGYYGASIMPVEVLKELRERLPG 312 (523)
T ss_pred HHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCC-cccceEEEEcCCcCCHHHHHHHHHHcCC
Confidence 45677777777889999999999999999999999999999876554444 7899999999999999999999864 7
Q ss_pred CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccc
Q 008342 335 FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK 414 (569)
Q Consensus 335 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 414 (569)
+++++.||+||++.++..+.... .....+++|.|.+++ +++|+|++ +++++.+ +.|||+++|+.++.
T Consensus 313 ~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~~~i~~~~-~~~~~~g--~~Gei~v~~~~~~~ 379 (523)
T PRK08316 313 LRFYNCYGQTEIAPLATVLGPEE---------HLRRPGSAGRPVLNV-ETRVVDDD-GNDVAPG--EVGEIVHRSPQLML 379 (523)
T ss_pred CceeeeecccccCccccccCccc---------cccccCCcccCCCCc-EEEEEcCC-CCCCCCC--CcceEEEECCchhh
Confidence 89999999999988766543211 112347889999999 69999966 8888887 78999999999999
Q ss_pred cccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCce
Q 008342 415 GYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 494 (569)
Q Consensus 415 gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~ 494 (569)
||+++++.+...|.+|||+|||+|+++++|.+++.||.||+|+++|.+++|.+||+.|.++++|.+++|++.+++..++.
T Consensus 380 ~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~ 459 (523)
T PRK08316 380 GYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEA 459 (523)
T ss_pred hhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred eeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 495 PCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 495 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
+.++++..++... ..+++.++++++++.+++|..+.+++ +|+|++||++|++|++.|.+..
T Consensus 460 ~~~~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~~ 521 (523)
T PRK08316 460 VTAVVVPKAGATV-----TEDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGAF 521 (523)
T ss_pred EEEEEEECCCCCC-----CHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhhc
Confidence 9999998766433 45779999999999999999998776 9999999999999999998654
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=549.78 Aligned_cols=509 Identities=22% Similarity=0.319 Sum_probs=407.6
Q ss_pred cccCHHHHHHHhhhhCCCceeeeeCC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 18 TALTPLWFINRAATLHPTRKSVVYGS--KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
...++.++|+++++++|+++|+++.+ +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 14 ~~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 93 (534)
T PRK05852 14 FGPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADL 93 (534)
T ss_pred hcccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCc
Confidence 35579999999999999999998754 5799999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchh--
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAI-- 173 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-- 173 (569)
+++++++.++.+++.++++.++++++|++........... .. .....+.+...... ..+..
T Consensus 94 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~--------~~~~~~~ 156 (534)
T PRK05852 94 VVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPT--TR-------WWPLTVNVGGDSGP--------SGGTLSV 156 (534)
T ss_pred EEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhcccc--cc-------ccceeeeecccccc--------ccccccc
Confidence 9999999999999999999999999999875432111100 00 01111222111000 00000
Q ss_pred hHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHH
Q 008342 174 EYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY 253 (569)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 253 (569)
.+.... .............++.++++|||||||.||+|.++|+++...+......+++.++|++++..|++|.+|+..
T Consensus 157 ~~~~~~--~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 234 (534)
T PRK05852 157 HLDAAT--EPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIA 234 (534)
T ss_pred cccccc--CCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHH
Confidence 000000 000001111123467899999999999999999999999988888888889999999999999999999987
Q ss_pred HHHHHHhcceEEEec---cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCC-CCCCcccceeeeecCCCCCHHHHHH
Q 008342 254 TWSLAALCGTSICLR---QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED-TILPLTNVVNVNTAGAPPPPSLLFA 329 (569)
Q Consensus 254 ~~~~~~~g~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~l~~l~~~~~~g~~l~~~~~~~ 329 (569)
.+...+.++..++++ .+++..+++.|+++++|++.++|.++..+.+..... .....+++|.++++|+++++++.++
T Consensus 235 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~ 314 (534)
T PRK05852 235 ALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQA 314 (534)
T ss_pred HHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHH
Confidence 666666655555542 478899999999999999999999999998865432 1122678999999999999999999
Q ss_pred hhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEe
Q 008342 330 MSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMR 408 (569)
Q Consensus 330 ~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~ 408 (569)
+.+ ++.++++.||+||++..++.+....... ........+..|. .+++ .++++|++ +++++.+ +.|||+++
T Consensus 315 ~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~---~~~~~~~~g~~g~-~~g~-~~~i~d~~-g~~~~~g--~~Gel~v~ 386 (534)
T PRK05852 315 LQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQ---TENPVVSTGLVGR-STGA-QIRIVGSD-GLPLPAG--AVGEVWLR 386 (534)
T ss_pred HHHHhCCChhhccCccccchhhhcCCcccccc---ccCcccccccCCC-CCCC-eEEEECCC-CCCCCCC--CceEEEEe
Confidence 884 5999999999999987665432210000 0000011233343 6788 69999987 7888887 78999999
Q ss_pred cCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecC
Q 008342 409 GSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488 (569)
Q Consensus 409 ~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 488 (569)
|+.++.||+++++.+...|.+|||+|||++++++||++++.||.+|+|+.+|.+++|.+||++|.++|+|.+|+|++.++
T Consensus 387 g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~ 466 (534)
T PRK05852 387 GTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPD 466 (534)
T ss_pred cCcccchhcCCcccchhhhcCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
+..++.+.++++..+.... ..++|.++++++|+.+++|..+.+++ ||+|++||++|++|++.+..
T Consensus 467 ~~~g~~~~~~vv~~~~~~~-----~~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~ 532 (534)
T PRK05852 467 QLYGEAVAAVIVPRESAPP-----TAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGH 532 (534)
T ss_pred cCcCceEEEEEEECCCCCC-----CHHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHHHHHHhcc
Confidence 8888999999887654333 45789999999999999999999877 99999999999999998853
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-66 Score=545.40 Aligned_cols=521 Identities=31% Similarity=0.483 Sum_probs=425.0
Q ss_pred ccccCHHHHHHHhhhhCCCceeeee--CC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhh
Q 008342 17 YTALTPLWFINRAATLHPTRKSVVY--GS--KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPM 92 (569)
Q Consensus 17 ~~~~~l~~~l~~~a~~~p~~~a~~~--~~--~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 92 (569)
..++|+.++|+++++++|++++++. .+ +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||++
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~ 86 (542)
T PRK06018 7 DWPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMG 86 (542)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHh
Confidence 4578999999999999999999985 23 7899999999999999999999999999999999999999999999999
Q ss_pred cCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcch
Q 008342 93 AGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGA 172 (569)
Q Consensus 93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (569)
+|++++|+++.++.+++.++++.+++++++++.+....+.+...... ....++.+.+..... .....+.
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~ 155 (542)
T PRK06018 87 IGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLP-------SVERYVVLTDAAHMP----QTTLKNA 155 (542)
T ss_pred cCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCC-------CccEEEEeccccccc----ccCcccc
Confidence 99999999999999999999999999999999887776665544333 234444443321100 0011233
Q ss_pred hhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHH--HHHhHhHhCCCCCcEEEEcCCccchhh
Q 008342 173 IEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGNG 250 (569)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~--~~~~~~~~~~~~~d~~~~~~p~~~~~g 250 (569)
..|.+++........ .....++++++++|||||||.||+|.+||++.+.. .......+++.++|+++...|++|.++
T Consensus 156 ~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~ 234 (542)
T PRK06018 156 VAYEEWIAEADGDFA-WKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANS 234 (542)
T ss_pred ccHHHHhccCCcccC-cccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhh
Confidence 456666655433221 12345678999999999999999999999974322 223344677889999999999999999
Q ss_pred HHHHHHHHHhcceEEEec-cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHH
Q 008342 251 WSYTWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFA 329 (569)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~ 329 (569)
+...+..+..|++.++.. .+++..+++.++++++|++.++|+++..+.+........ ++++|.++++|+++++++.++
T Consensus 235 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~~G~~l~~~~~~~ 313 (542)
T PRK06018 235 WGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLK-LPHLKMVVCGGSAMPRSMIKA 313 (542)
T ss_pred hHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCC-cccceEEEEcCCCCCHHHHHH
Confidence 887777777787776653 578899999999999999999999999998776544444 789999999999999999999
Q ss_pred hhhcCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEec
Q 008342 330 MSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 409 (569)
Q Consensus 330 ~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~ 409 (569)
+++.++++++.||+||++.+++.+...+.+.............++|.|.+++ +++|+|++ ++.++.++...|||+++|
T Consensus 314 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~-~i~v~d~~-~~~~~~~~~~~Gel~i~g 391 (542)
T PRK06018 314 FEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGV-EMKITDDA-GKELPWDGKTFGRLKVRG 391 (542)
T ss_pred HHHhCCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCc-EEEEECCC-CCCCCCCCCceeEEEEec
Confidence 9888899999999999998776654333332222222222345789999999 69999975 888877544689999999
Q ss_pred CcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCC
Q 008342 410 SCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489 (569)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 489 (569)
++++.||++... .....+|||+|||+++++++|.+++.||.+|+|+.+|.++++.+||.++.++|.|.+|+|++.+++
T Consensus 392 ~~~~~gy~~~~~--~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~ 469 (542)
T PRK06018 392 PAVAAAYYRVDG--EILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHP 469 (542)
T ss_pred CCcchhhhcCcc--cEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCC
Confidence 999999998321 122247899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 490 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
..++.+.+++++.++... ..+++.++++++++.+++|..+.+++ ||+|++||++|++|++++.+.
T Consensus 470 ~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~~ 535 (542)
T PRK06018 470 KWDERPLLIVQLKPGETA-----TREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKDY 535 (542)
T ss_pred CcCceeEEEEEeCCCCCC-----CHHHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhcc
Confidence 888889999988776543 45789999999999999999998777 999999999999999999874
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-67 Score=553.59 Aligned_cols=509 Identities=22% Similarity=0.250 Sum_probs=393.9
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCe----------eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHH
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSK----------HYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQF 88 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~----------~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 88 (569)
.+++.++|++.++++|+++|+++.+. ++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|
T Consensus 5 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~l 84 (552)
T PRK09274 5 MANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTF 84 (552)
T ss_pred hhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHH
Confidence 46889999999999999999998664 89999999999999999999999999999999999999999999
Q ss_pred HhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhh
Q 008342 89 GAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYAL 168 (569)
Q Consensus 89 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (569)
||+++|++++|++|.++.+++.+++++++++++|++.+.. ......... ......++.++...
T Consensus 85 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~--~~~~~~~~~-----~~~~~~~i~~~~~~---------- 147 (552)
T PRK09274 85 ALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAH--LARRLFGWG-----KPSVRRLVTVGGRL---------- 147 (552)
T ss_pred HHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHH--HHHHHhccC-----ccchhheecccccc----------
Confidence 9999999999999999999999999999999999875311 111110000 00122233332210
Q ss_pred hcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccch
Q 008342 169 ARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHG 248 (569)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 248 (569)
..+...+.++...............++++++++|||||||.||+|.++|+++..........+++.++++.++.+|++|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 227 (552)
T PRK09274 148 LWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFAL 227 (552)
T ss_pred ccCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHh
Confidence 01112344443221111111123456899999999999999999999999999888888888899999999999998776
Q ss_pred hhHHHHHHHHHhcceEEEec-------cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCC
Q 008342 249 NGWSYTWSLAALCGTSICLR-------QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAP 321 (569)
Q Consensus 249 ~g~~~~~~~~~~g~~~~~~~-------~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~ 321 (569)
+++ ..|++.++.. .+++..+++.|+++++|+++++|++++.|.+........ ++++|.+++||++
T Consensus 228 ~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~ 299 (552)
T PRK09274 228 FGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIK-LPSLRRVISAGAP 299 (552)
T ss_pred hhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCC-CchhhEEEecCCc
Confidence 543 3466665542 357899999999999999999999999998875444334 8899999999999
Q ss_pred CCHHHHHHhhhc---CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCC--------
Q 008342 322 PPPSLLFAMSQK---GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDAR-------- 390 (569)
Q Consensus 322 l~~~~~~~~~~~---~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~-------- 390 (569)
+++++.+++++. |+++++.||+||++++++...... ..............++|.|++++ +++|+|+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~~~~~~~~~vG~~~~~~-~~~ivd~~~~~~~~~~ 377 (552)
T PRK09274 300 VPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREI-LFATRAATDNGAGICVGRPVDGV-EVRIIAISDAPIPEWD 377 (552)
T ss_pred CCHHHHHHHHHHcCCCceEEccccccccceeEeecchhh-hccccccccCCCCcccCccCCCc-eEEEEecccccccccc
Confidence 999999999854 579999999999987554332110 00000000011124689999999 69999863
Q ss_pred CCcccCCCCCceEEEEEecCcccccccCCcchhhhhh---cCC--eeecCceeEEcCCCeEEEecccCceEEeCceeech
Q 008342 391 TNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF---ANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISS 465 (569)
Q Consensus 391 ~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~g--~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~ 465 (569)
++++++.| +.|||+++|++++.||+++++.+...| .+| ||+|||+|+++++|+++++||.||+|+++|.+|+|
T Consensus 378 ~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p 455 (552)
T PRK09274 378 DALRLATG--EIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYT 455 (552)
T ss_pred ccccCCCC--CeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECc
Confidence 35677777 799999999999999999999888766 256 99999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCC--
Q 008342 466 VEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKS-- 542 (569)
Q Consensus 466 ~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t-- 542 (569)
.+||++|.+||.|.+|+|++.+++. ++.++++|++.++... +.++..+.+.+++.. ++.++.|..+.+++ ||+|
T Consensus 456 ~eIE~~l~~~p~V~~~~v~~~~~~~-~~~~~~~v~~~~~~~~-~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~lP~t~~ 532 (552)
T PRK09274 456 IPCERIFNTHPGVKRSALVGVGVPG-AQRPVLCVELEPGVAC-SKSALYQELRALAAA-HPHTAGIERFLIHPSFPVDIR 532 (552)
T ss_pred HHHHHHHHhCcccceeEEEEeCCCC-CceEEEEEEccCcccc-chHHHhhhhHHHHHh-cCCCcceeEEeccCCCCcccc
Confidence 9999999999999999999998764 6678888888776433 111123344443333 23446667788777 9999
Q ss_pred CCCcccHHHHHHHHHhc
Q 008342 543 ATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 543 ~~GKi~r~~l~~~~~~~ 559 (569)
++||++|++|++++.+.
T Consensus 533 ~~GKi~r~~L~~~~~~~ 549 (552)
T PRK09274 533 HNAKIFREKLAVWAAKQ 549 (552)
T ss_pred ccccccHHHHHHHHHHh
Confidence 79999999999988765
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-66 Score=548.50 Aligned_cols=525 Identities=28% Similarity=0.439 Sum_probs=427.0
Q ss_pred cccccccCHHHHHHHhhhhCCCceeeee--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhh
Q 008342 14 SANYTALTPLWFINRAATLHPTRKSVVY--GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAP 91 (569)
Q Consensus 14 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 91 (569)
.+...++++.++|++.++++|+++|+++ .++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+
T Consensus 10 ~~~~~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~ 89 (559)
T PRK08315 10 DVPLLEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATA 89 (559)
T ss_pred cCChhhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHH
Confidence 3445567999999999999999999988 45789999999999999999999999999999999999999999999999
Q ss_pred hcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchH-----HHHHHHHHHhhh------cCCCCCcCeEEEecCCCcc
Q 008342 92 MAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFS-----LAEEALKMMEAN------SEGKLKTPHLIVIGDESCD 160 (569)
Q Consensus 92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~ 160 (569)
++|++++|++|..+.+++..+++.++++++|++..... .+.+....+... .........++.++...
T Consensus 90 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 167 (559)
T PRK08315 90 KIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK-- 167 (559)
T ss_pred HhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccC--
Confidence 99999999999999999999999999999999875421 122221111000 00000122333333221
Q ss_pred hhhhHHhhhcchhhHHhhhhcCCCC-----CCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCC
Q 008342 161 SKQLEYALARGAIEYEKFLETGDPE-----FAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNE 235 (569)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~ 235 (569)
..+...+.++....... .........+++++++|||||||.||+|.++|+++...+......+++.+
T Consensus 168 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~ 239 (559)
T PRK08315 168 --------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTE 239 (559)
T ss_pred --------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCC
Confidence 11223444443322110 01112245678999999999999999999999999988888888889999
Q ss_pred CcEEEEcCCccchhhHHHHHHHHHh-cceEEEe-ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccce
Q 008342 236 GAVFLWTLPMFHGNGWSYTWSLAAL-CGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVV 313 (569)
Q Consensus 236 ~d~~~~~~p~~~~~g~~~~~~~~~~-g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~ 313 (569)
+|+++..+|++|.+|+...+...+. |++.++. ..+++..+++.++++++|++.++|+++..++......... ++++|
T Consensus 240 ~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~-~~~lr 318 (559)
T PRK08315 240 EDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFD-LSSLR 318 (559)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCC-chhhh
Confidence 9999999999999998766555555 5555434 4678999999999999999999999998888765544444 88999
Q ss_pred eeeecCCCCCHHHHHHhhh-cCC-eEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCC
Q 008342 314 NVNTAGAPPPPSLLFAMSQ-KGF-RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDART 391 (569)
Q Consensus 314 ~~~~~g~~l~~~~~~~~~~-~~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~ 391 (569)
.++++|+++++++.+.+.+ ++. ++++.||+||++.+++.+..... ......++|.|++++ .++|+|+++
T Consensus 319 ~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~vG~p~~~~-~v~i~d~~~ 389 (559)
T PRK08315 319 TGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDP--------LEKRVTTVGRALPHL-EVKIVDPET 389 (559)
T ss_pred eeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccc--------hhhccCCCCccCCCc-EEEEEcCcc
Confidence 9999999999999998874 454 59999999999876655432211 112347889999999 699999988
Q ss_pred CcccCCCCCceEEEEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHH
Q 008342 392 NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEK 470 (569)
Q Consensus 392 ~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~ 470 (569)
+++++.| +.|||+++|+.++.||++++..+...| .++||+|||+++++++|.++++||.||+++++|.++++.+||+
T Consensus 390 ~~~~~~g--~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~ 467 (559)
T PRK08315 390 GETVPRG--EQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEE 467 (559)
T ss_pred CCcCCCC--CceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHH
Confidence 9999887 789999999999999999998888887 6889999999999999999999999999999999999999999
Q ss_pred HHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccH
Q 008342 471 VLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQK 549 (569)
Q Consensus 471 ~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r 549 (569)
+|.++++|.+++|++.+++..++.+.++|+..++... ..+++.+++++.++.|++|..+.+++ ||+|++||++|
T Consensus 468 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r 542 (559)
T PRK08315 468 FLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATL-----TEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQK 542 (559)
T ss_pred HHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCC-----CHHHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeH
Confidence 9999999999999999888878888898887765433 45789999999999999999999877 99999999999
Q ss_pred HHHHHHHHhcCCcccc
Q 008342 550 HLLRAKAKEMGPVKMI 565 (569)
Q Consensus 550 ~~l~~~~~~~~~~~~~ 565 (569)
.+|++++.+....+++
T Consensus 543 ~~L~~~~~~~~~~~~~ 558 (559)
T PRK08315 543 FKMREMMIEELGLQAA 558 (559)
T ss_pred HHHHHHHHhhhchhhc
Confidence 9999998887665543
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-66 Score=549.51 Aligned_cols=530 Identities=26% Similarity=0.398 Sum_probs=425.6
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCC---eeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCchhHHHHHHHhh
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGS---KHYTWHQTYRRCRRFASALSK-LSIGLGTTVSVIAPNVPAMYEAQFGAP 91 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~---~~~Ty~el~~~~~~la~~L~~-~g~~~g~~V~i~~~~~~~~~~~~lA~~ 91 (569)
.+.++|+.++|++++..+|+++|+++.+ +.+||+||.+++.++|++|.+ .|+++||+|+++++|+++++++++||+
T Consensus 6 ~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~ 85 (576)
T PRK05620 6 QDVPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVA 85 (576)
T ss_pred hcCCCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 4567899999999999999999998753 799999999999999999986 799999999999999999999999999
Q ss_pred hcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcc
Q 008342 92 MAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARG 171 (569)
Q Consensus 92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (569)
++|++++++++.++.+++.++++.++++++|+++.....+......++ ....++.++................
T Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~ 158 (576)
T PRK05620 86 CMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECP-------CVRAVVFIGPSDADSAAAHMPEGIK 158 (576)
T ss_pred hcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCc-------cccEEEEecCcccccchhccccccc
Confidence 999999999999999999999999999999999877666655544433 2344555443221110000011123
Q ss_pred hhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHh--HhHhCCCCCcEEEEcCCccchh
Q 008342 172 AIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNG--ALIWGMNEGAVFLWTLPMFHGN 249 (569)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~ 249 (569)
..+|.+++........ .....++++++++|||||||.||+|.++|+++....... ...+++..++++++.+|++|.+
T Consensus 159 ~~~~~~l~~~~~~~~~-~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~ 237 (576)
T PRK05620 159 VYSYEALLDGRSTVYD-WPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVL 237 (576)
T ss_pred cccHHHHhhcCCCcCC-CCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhh
Confidence 4567777754332221 123466899999999999999999999999986554332 3356788999999999999999
Q ss_pred hHHHHHHHHHhcceEEEec-cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHH
Q 008342 250 GWSYTWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLF 328 (569)
Q Consensus 250 g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~ 328 (569)
++...+.++..|+++++.. .+++..+++.++++++|++.++|+++..++......... ..++|.++++|+++++++.+
T Consensus 238 g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~gG~~~~~~~~~ 316 (576)
T PRK05620 238 SWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPE-RMSLQEIYVGGSAVPPILIK 316 (576)
T ss_pred hhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcc-cCceeEEEEcCCCCCHHHHH
Confidence 9987777777788777664 578999999999999999999999999887654332222 46799999999999999999
Q ss_pred Hhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEE
Q 008342 329 AMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVM 407 (569)
Q Consensus 329 ~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v 407 (569)
++.+ +++++++.||+||++..++.....+.. ..........++|.+.+++ +++++|+ +..++...++.|||++
T Consensus 317 ~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~~~-~~~i~~~--g~~~~~~~~~~Gel~v 390 (576)
T PRK05620 317 AWEERYGVDVVHVWGMTETSPVGTVARPPSGV---SGEARWAYRVSQGRFPASL-EYRIVND--GQVMESTDRNEGEIQV 390 (576)
T ss_pred HHHHHhCCceeeeccccccccceeeeccCCcc---ccccccccccccCCcCCce-eEEEecC--CccccCCCCCceEEEE
Confidence 9874 489999999999998766544322110 0011111234788888888 6999985 6666543336899999
Q ss_pred ecCcccccccCCcchh----h------------hhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHH
Q 008342 408 RGSCVMKGYLKNPKAN----E------------EAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEK 470 (569)
Q Consensus 408 ~~~~~~~gy~~~~~~~----~------------~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~ 470 (569)
+|++++.||+++++.+ . ..| .+|||+|||++++++||.+++.||.+|+|+.+|.++++.+||.
T Consensus 391 ~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~ 470 (576)
T PRK05620 391 RGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLEN 470 (576)
T ss_pred EcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHH
Confidence 9999999999988776 2 223 3689999999999999999999999999999999999999999
Q ss_pred HHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccH
Q 008342 471 VLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQK 549 (569)
Q Consensus 471 ~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r 549 (569)
+|.+||.|.+++|++.+++..|+.+.+++++.++.... +...++|+++++++|+.|++|..+.+++ ||+|++||++|
T Consensus 471 ~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~--~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~r 548 (576)
T PRK05620 471 YIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPT--RETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDK 548 (576)
T ss_pred HHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcc--cccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCcH
Confidence 99999999999999999998889999998887664321 1146889999999999999999999877 99999999999
Q ss_pred HHHHHHHHhcCCc
Q 008342 550 HLLRAKAKEMGPV 562 (569)
Q Consensus 550 ~~l~~~~~~~~~~ 562 (569)
++|++++.++...
T Consensus 549 ~~L~~~~~~~~~~ 561 (576)
T PRK05620 549 KDLRQHLADGDFE 561 (576)
T ss_pred HHHHHHHhcCCcc
Confidence 9999999976543
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-66 Score=538.80 Aligned_cols=491 Identities=31% Similarity=0.460 Sum_probs=413.6
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEee
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNS 99 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 99 (569)
+++.++++++++.+|+++|+.+.++.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLP 81 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhh
Q 008342 100 INIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFL 179 (569)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (569)
+++.++.+++.++++.+++++++++++....... ....+.++..... .+..+.
T Consensus 82 l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~--------------~~~~~~~~~~~~~-------------~~~~~~ 134 (497)
T PRK06145 82 INYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL--------------ETPKIVIDAAAQA-------------DSRRLA 134 (497)
T ss_pred cccccCHHHHHHHHHhcCCcEEEEccchhhhhhc--------------ccceEEecCcccc-------------hhHHHh
Confidence 9999999999999999999999998765432110 1122223221100 011111
Q ss_pred hcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHH-HHHH
Q 008342 180 ETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT-WSLA 258 (569)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~-~~~~ 258 (569)
.............++++++++|||||||.||+|.++|.++..........+++..+++++...|++|.+++... +..+
T Consensus 135 -~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 213 (497)
T PRK06145 135 -QGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVL 213 (497)
T ss_pred -ccCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHH
Confidence 11111111123466899999999999999999999999988776666677889999999999999999988654 4455
Q ss_pred HhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc--CCe
Q 008342 259 ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFR 336 (569)
Q Consensus 259 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~--~~~ 336 (569)
..|+++++.+.+++..+++.++++++|++.++|+++..++......... ++++|.+++||+++++++.+++.+. +.+
T Consensus 214 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~-~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~ 292 (497)
T PRK06145 214 WVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFD-LDSLAWCIGGGEKTPESRIRDFTRVFTRAR 292 (497)
T ss_pred hccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccc-cccceEEEecCCCCCHHHHHHHHHHcCCCc
Confidence 6677777777889999999999999999999999999998876544444 7889999999999999999998854 688
Q ss_pred EecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccc
Q 008342 337 ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY 416 (569)
Q Consensus 337 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy 416 (569)
+++.||+||+++..+...... .....+++|.|.+++ +++++|++ +++++.+ +.|||+++|++++.||
T Consensus 293 v~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~~~i~~~~-~~~~~~~--~~Gel~v~g~~~~~Gy 359 (497)
T PRK06145 293 YIDAYGLTETCSGDTLMEAGR---------EIEKIGSTGRALAHV-EIRIADGA-GRWLPPN--MKGEICMRGPKVTKGY 359 (497)
T ss_pred eEEeecCcccCCcceeccCcc---------ccccCCCcccCCCCc-eEEEECCC-CCCCCCC--CceEEEEECcchhhhh
Confidence 999999999987554332111 111236789999999 69999975 7888877 7899999999999999
Q ss_pred cCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceee
Q 008342 417 LKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC 496 (569)
Q Consensus 417 ~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 496 (569)
+++++.+...|.++||+|||+++++++|.+++.||.||+|+++|.+++|.+||..|.++|+|.+++|++.+++..|+.+.
T Consensus 360 ~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 439 (497)
T PRK06145 360 WKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERIT 439 (497)
T ss_pred cCChHHHHHHHhCCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888899
Q ss_pred EEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHH
Q 008342 497 AFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK 557 (569)
Q Consensus 497 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~ 557 (569)
+++++.+.... ..++|.++++++|+.+++|..+.+++ ||+|++||++|++|++++.
T Consensus 440 ~~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 440 AVVVLNPGATL-----TLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred EEEEECCCCCC-----CHHHHHHHHHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence 99988765433 45789999999999999999999877 9999999999999998753
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=541.41 Aligned_cols=509 Identities=28% Similarity=0.364 Sum_probs=426.1
Q ss_pred cccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 18 TALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
++.|+.++|.++++++|+++|+++.++.+||.||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~ 89 (524)
T PRK06188 10 SGATYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR 89 (524)
T ss_pred CCccHHHHHHHHHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEccc-chHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHH
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQE-FFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYE 176 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (569)
+++++.++.+++..+++.++++.+++++. ............. ...+++.+....... ..+.
T Consensus 90 v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-----------~~~~ 151 (524)
T PRK06188 90 TALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVP-------SLKHVLTLGPVPDGV-----------DLLA 151 (524)
T ss_pred EecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcC-------CceEEEEeCCccchh-----------hHHH
Confidence 99999999999999999999999999876 3333332222111 223445444321100 0011
Q ss_pred hhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHH
Q 008342 177 KFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWS 256 (569)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~ 256 (569)
... ... .........++++++++|||||||.||+|.++|.++..........+++..++++++.+|++|.+++. .+.
T Consensus 152 ~~~-~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~ 228 (524)
T PRK06188 152 AAA-KFG-PAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLP 228 (524)
T ss_pred hhh-ccC-cccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HHH
Confidence 111 111 11111123445699999999999999999999999999888888888999999999999999998875 455
Q ss_pred HHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhh-hcCC
Q 008342 257 LAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGF 335 (569)
Q Consensus 257 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~~~ 335 (569)
.++.|+++++.+.+++..+++.++++++|++.++|+++..+++........ ++++|.+++||++++++....+. .++.
T Consensus 229 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-l~~lr~~~~gg~~~~~~~~~~~~~~~~~ 307 (524)
T PRK06188 229 TLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRD-LSSLETVYYGASPMSPVRLAEAIERFGP 307 (524)
T ss_pred HHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCC-CcceeEEEEcCCCCCHHHHHHHHHHhCc
Confidence 667788888888889999999999999999999999999998876555444 88999999999999999887776 4588
Q ss_pred eEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccccc
Q 008342 336 RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKG 415 (569)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~g 415 (569)
.+++.||+||++..+..+...... ........++|.|++++ .++++|++ +++++.| +.|||+++|+.++.|
T Consensus 308 ~~~~~YG~tE~~~~~~~~~~~~~~-----~~~~~~~~~~G~p~~g~-~v~i~~~~-~~~~~~g--~~Gel~v~~~~~~~g 378 (524)
T PRK06188 308 IFAQYYGQTEAPMVITYLRKRDHD-----PDDPKRLTSCGRPTPGL-RVALLDED-GREVAQG--EVGEICVRGPLVMDG 378 (524)
T ss_pred hhhheeCccccCCceeecCchhcc-----ccccccCCccccccCCc-EEEEEcCC-CCCCCCC--CeeEEEEECcchhhh
Confidence 899999999997666554322110 01123446789999999 59999976 8888887 789999999999999
Q ss_pred ccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCcee
Q 008342 416 YLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 495 (569)
Q Consensus 416 y~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~ 495 (569)
|++++..+...|.+|||+|||+++++++|.+++.||.+|+++++|.+++|.+||++|.+++.|.+++|++.+++..++.+
T Consensus 379 y~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~ 458 (524)
T PRK06188 379 YWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAV 458 (524)
T ss_pred hcCChHHhhhhhcCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888899
Q ss_pred eEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCCc
Q 008342 496 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPV 562 (569)
Q Consensus 496 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~ 562 (569)
.+++++.+.... ..++|.+++++.++.+++|..+.+++ ||+|++||++|++|++.+.+....
T Consensus 459 ~~~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~~~~~ 521 (524)
T PRK06188 459 TAVVVLRPGAAV-----DAAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWEGRGR 521 (524)
T ss_pred EEEEEECCCCCC-----CHHHHHHHHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHhhccc
Confidence 999988765443 45789999999999999999999877 999999999999999999766543
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=544.04 Aligned_cols=510 Identities=25% Similarity=0.351 Sum_probs=422.3
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCC-eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcC
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGS-KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 94 (569)
.|.+.|+.+++++.++.+|+++|+++.+ +++||+||++++.++|++|.+.|+++||+|+++++|+++++++++||+++|
T Consensus 19 ~~~~~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G 98 (547)
T PRK06087 19 YWGDASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVG 98 (547)
T ss_pred CCCCCCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 5677899999999999999999999876 799999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccccCCHHHHHHHHhcCCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhh
Q 008342 95 AVLNSINIRLNATVVAFILSHASSAVVIVDQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALA 169 (569)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (569)
++++|+++.++.+++.++++.+++++++++.... +.+......+. ...+++.++.....
T Consensus 99 ~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--------- 162 (547)
T PRK06087 99 AVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLP-------QLQQIVGVDKLAPA--------- 162 (547)
T ss_pred cEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCC-------CCcEEEEeCCcCCC---------
Confidence 9999999999999999999999999999976432 22222222222 23455555543211
Q ss_pred cchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchh
Q 008342 170 RGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGN 249 (569)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 249 (569)
.....+.+++....... .......+++++|+|||||||.||+|.++|.++..........+++.++|++++..|++|.+
T Consensus 163 ~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 241 (547)
T PRK06087 163 TSSLSLSQIIADYEPLT-TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHAT 241 (547)
T ss_pred cCccCHHHHhccCCccc-CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHH
Confidence 11234455544332211 11234678999999999999999999999999988887777778899999999999999999
Q ss_pred hHHHHHHH-HHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHH
Q 008342 250 GWSYTWSL-AALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLF 328 (569)
Q Consensus 250 g~~~~~~~-~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~ 328 (569)
|+...+.. ++.|+++++...+++..+++.++++++|++.++|+.+..+++........ ++++|.+++||+++++++.+
T Consensus 242 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~-~~~lr~i~~gG~~~~~~~~~ 320 (547)
T PRK06087 242 GFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPAD-LSALRFFLCGGTTIPKKVAR 320 (547)
T ss_pred HHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCC-CCCeEEEEEcCCCCCHHHHH
Confidence 98655544 45567777777889999999999999999999888777777665444334 78999999999999999999
Q ss_pred HhhhcCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEe
Q 008342 329 AMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMR 408 (569)
Q Consensus 329 ~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~ 408 (569)
.+.+.++++++.||+||++++....... .......+.|.|.+++ .++++|++ +.+++.| +.|||+++
T Consensus 321 ~~~~~~~~l~~~YG~TE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~ 387 (547)
T PRK06087 321 ECQQRGIKLLSVYGSTESSPHAVVNLDD---------PLSRFMHTDGYAAAGV-EIKVVDEA-RKTLPPG--CEGEEASR 387 (547)
T ss_pred HHHHcCCcEEEEecccccCCccccCCCc---------chhhcCCcCCccCCCc-eEEEEcCC-CCCCcCC--CcceEEEe
Confidence 8887899999999999998766543211 1111235689999999 69999965 8888877 78999999
Q ss_pred cCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeec
Q 008342 409 GSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487 (569)
Q Consensus 409 ~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 487 (569)
|++++.||+++++.+...| .+|||+|||+++++++|.+++.||.+|+|+.+|.+++|.+||++|.++|.|.++++++.+
T Consensus 388 g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~ 467 (547)
T PRK06087 388 GPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMP 467 (547)
T ss_pred cccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecC
Confidence 9999999999999888887 478999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHH-hcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 488 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 488 ~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
++..|+.+.++++..+..... ..+++.+++. +.++.+++|..+.+++ ||+|++||++|++|++.+.+..
T Consensus 468 ~~~~g~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~ 538 (547)
T PRK06087 468 DERLGERSCAYVVLKAPHHSL----TLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRL 538 (547)
T ss_pred CCCcCceEEEEEEECCCCCCC----CHHHHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHh
Confidence 888899999999887632221 4467777764 6799999999999877 9999999999999999888763
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=544.42 Aligned_cols=515 Identities=27% Similarity=0.416 Sum_probs=421.2
Q ss_pred ccccCHHHHHHHhhhhCCCceeeeeC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcC
Q 008342 17 YTALTPLWFINRAATLHPTRKSVVYG--SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94 (569)
Q Consensus 17 ~~~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 94 (569)
....++.++|++.++++|+++|+++. ++.+||.||.+++.++|++|.+.|+++|++|+++++|++++++++|||+++|
T Consensus 15 ~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G 94 (558)
T PRK12583 15 LLTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIG 94 (558)
T ss_pred cccCcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhC
Confidence 44568999999999999999999884 4789999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccccCCHHHHHHHHhcCCceEEEEcccch-----HHHHHHHHHHhhhc------CCCCCcCeEEEecCCCcchhh
Q 008342 95 AVLNSINIRLNATVVAFILSHASSAVVIVDQEFF-----SLAEEALKMMEANS------EGKLKTPHLIVIGDESCDSKQ 163 (569)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~ 163 (569)
++++++++.++.+++.+++++++++++|++.... ..+......+.... ........++.......
T Consensus 95 ~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 170 (558)
T PRK12583 95 AILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPP---- 170 (558)
T ss_pred CEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCC----
Confidence 9999999999999999999999999999986532 22222222211000 00001223333332211
Q ss_pred hHHhhhcchhhHHhhhhcCCCC-----CCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcE
Q 008342 164 LEYALARGAIEYEKFLETGDPE-----FAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAV 238 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~ 238 (569)
.+...|+++....... ........++++++++|||||||.||+|.++|.++...+......+++..+|+
T Consensus 171 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~ 244 (558)
T PRK12583 171 ------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDR 244 (558)
T ss_pred ------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCe
Confidence 1223344443322111 01112245678999999999999999999999999988888888889999999
Q ss_pred EEEcCCccchhhHHHHHHHHHhcceEEEe--ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeee
Q 008342 239 FLWTLPMFHGNGWSYTWSLAALCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVN 316 (569)
Q Consensus 239 ~~~~~p~~~~~g~~~~~~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~ 316 (569)
+++..|++|.+|....+..++.+|.++++ ..+++..+++.++++++|++.++|+++..++......... ++++|.++
T Consensus 245 ~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~~~lr~i~ 323 (558)
T PRK12583 245 LCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFD-LSSLRTGI 323 (558)
T ss_pred EEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCC-chhheEEE
Confidence 99999999999987766666665555553 3578999999999999999999999998888765444434 78999999
Q ss_pred ecCCCCCHHHHHHhhh-c-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcc
Q 008342 317 TAGAPPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQP 394 (569)
Q Consensus 317 ~~g~~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~ 394 (569)
+||+++++++.+++.+ + +..+++.||+||++++++.+..... ......++|.|.+++ .++|+|++ +.+
T Consensus 324 ~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~vG~p~~~~-~~~i~d~~-~~~ 393 (558)
T PRK12583 324 MAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADD--------LERRVETVGRTQPHL-EVKVVDPD-GAT 393 (558)
T ss_pred ecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccc--------cccccCCCCccCCCC-eEEEECCC-CCC
Confidence 9999999999999874 4 4579999999999987665432211 112347889999999 69999998 888
Q ss_pred cCCCCCceEEEEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHh
Q 008342 395 VPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLY 473 (569)
Q Consensus 395 ~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~ 473 (569)
++.+ +.|||+++|+.++.||++++..+...| .++||+|||+|+++++|.+++.||.||+|+++|.+|+|.+||++|.
T Consensus 394 ~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~ 471 (558)
T PRK12583 394 VPRG--EIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLF 471 (558)
T ss_pred CCCC--CeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHH
Confidence 8887 789999999999999999999888877 7899999999999999999999999999999999999999999999
Q ss_pred cCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHH
Q 008342 474 LHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLL 552 (569)
Q Consensus 474 ~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l 552 (569)
++|.|.+++|++.++...++.++++++..++... ...+++++++++|+.+++|..+.+++ ||+|++||++|+.|
T Consensus 472 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L 546 (558)
T PRK12583 472 THPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAA-----SEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRM 546 (558)
T ss_pred hCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCC-----CHHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHHH
Confidence 9999999999999988888889999988765433 45789999999999999999998777 99999999999999
Q ss_pred HHHHHhc
Q 008342 553 RAKAKEM 559 (569)
Q Consensus 553 ~~~~~~~ 559 (569)
+++..+.
T Consensus 547 ~~~~~~~ 553 (558)
T PRK12583 547 REISIEE 553 (558)
T ss_pred HHHHHhh
Confidence 9987764
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-66 Score=563.56 Aligned_cols=477 Identities=19% Similarity=0.233 Sum_probs=394.5
Q ss_pred CHHHHHHHhhhh--CCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 21 TPLWFINRAATL--HPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 21 ~l~~~l~~~a~~--~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
|+.++|.+++.. +|+++|++.. ..+||+||+++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus 5 ~~~~~~~~~a~~~~~pd~~a~~~~-~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~v 83 (705)
T PRK06060 5 NLAGLLAEQASEAGWYDRPAFYAA-DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAF 83 (705)
T ss_pred CHHHHHHHHHhhccCCCceEEEec-CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEE
Confidence 788999999886 7999999875 4899999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
|++|.++.+++.+++++++++++|++.+....+.. ..++. ...+
T Consensus 84 pi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~---------------~~~~~---------------------~~~~ 127 (705)
T PRK06060 84 LANPELHRDDHALAARNTEPALVVTSDALRDRFQP---------------SRVAE---------------------AAEL 127 (705)
T ss_pred ecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcc---------------cccch---------------------hhhh
Confidence 99999999999999999999999998654322210 00000 0011
Q ss_pred hhcCCC-CCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhH-hHhCCCCCcEEEEcCCccchhhHHH-HH
Q 008342 179 LETGDP-EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA-LIWGMNEGAVFLWTLPMFHGNGWSY-TW 255 (569)
Q Consensus 179 l~~~~~-~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~g~~~-~~ 255 (569)
+..... ......+..++++++++|||||||.||+|.++|+++........ ..+++.++|++++..|++|.+++.. .+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 207 (705)
T PRK06060 128 MSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVW 207 (705)
T ss_pred hhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHH
Confidence 111000 00011123567899999999999999999999999987766553 4678899999999999999888753 44
Q ss_pred HHHHhcceEEEec-cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc-
Q 008342 256 SLAALCGTSICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK- 333 (569)
Q Consensus 256 ~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~- 333 (569)
..+..|+++++.+ .+++..+...++++++|+++++|+++..+.+..... . ++++|.+++||+++++++.+++.+.
T Consensus 208 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~--~-~~slr~i~~gGe~l~~~~~~~~~~~~ 284 (705)
T PRK06060 208 FPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSPD--S-FRSLRCVVSAGEALELGLAERLMEFF 284 (705)
T ss_pred HHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcccc--c-ccceeEEEEecCcCCHHHHHHHHHHc
Confidence 5556677777765 478888999999999999999999999998754322 2 7899999999999999999998854
Q ss_pred -CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcc
Q 008342 334 -GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV 412 (569)
Q Consensus 334 -~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 412 (569)
++++++.||+||++..+..+... .....++|+|++++ +++|+|++ +++++.| +.|||+++|+++
T Consensus 285 ~~~~~~~~YG~tE~~~~~~~~~~~-----------~~~~~~iG~p~~~~-~v~i~d~~-g~~~~~g--~~GEl~i~g~~v 349 (705)
T PRK06060 285 GGIPILDGIGSTEVGQTFVSNRVD-----------EWRLGTLGRVLPPY-EIRVVAPD-GTTAGPG--VEGDLWVRGPAI 349 (705)
T ss_pred CCCceEeeeeccccCceEEeccCC-----------CCCcCcccccCCCc-EEEEECCC-CCCCCCC--CceEEEEccchh
Confidence 58999999999998654332210 11236789999999 69999987 8888887 789999999999
Q ss_pred cccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCC
Q 008342 413 MKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 492 (569)
Q Consensus 413 ~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g 492 (569)
+.||+++++.+.. .+|||+|||+|++++||+++++||.||+||++|++|++.+||.+|.+|+.|.+++|++.++...+
T Consensus 350 ~~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~ 427 (705)
T PRK06060 350 AKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGA 427 (705)
T ss_pred hhhhhCCCccccc--CCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCC
Confidence 9999998876432 47899999999999999999999999999999999999999999999999999999999988888
Q ss_pred ceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHH
Q 008342 493 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA 556 (569)
Q Consensus 493 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (569)
+.++++++...+.... .....++.++++++|+.|++|..+.+++ ||+|++||++|++|++.+
T Consensus 428 ~~~~a~vv~~~~~~~~--~~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~ 490 (705)
T PRK06060 428 STLQAFLVATSGATID--GSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS 490 (705)
T ss_pred eeEEEEEEeccccCcC--hHHHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence 8899999876543221 1145688999999999999999999877 999999999999999865
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=539.48 Aligned_cols=489 Identities=22% Similarity=0.261 Sum_probs=402.1
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKL-SIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
+.++.++|++++. ++++|+++.++.+||.||.+++.++|++|.++ |+++|++|+++++|+++++++++||+++|+++
T Consensus 4 ~~~~~~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~ 81 (529)
T PRK07867 4 APTVAELLLPLAE--DDDRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVP 81 (529)
T ss_pred cccHHHHHHHhcc--cCCceEEECCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 4578999999884 88999999999999999999999999999996 89999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHh
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEK 177 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (569)
+|+++.++.+++.+++++++++++|++++....+.... + ...++.++. ..|.+
T Consensus 82 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~--------~~~~~~~~~----------------~~~~~ 134 (529)
T PRK07867 82 VGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---P--------GVRVINVDS----------------PAWAD 134 (529)
T ss_pred EEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---c--------CceEEEecc----------------ccHHH
Confidence 99999999999999999999999999987655433221 1 112222221 12444
Q ss_pred hhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHH
Q 008342 178 FLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSL 257 (569)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 257 (569)
++..............++++++++|||||||.||+|+++|+++..........+++.++|++++.+|++|.+++...+..
T Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~ 214 (529)
T PRK07867 135 ELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAV 214 (529)
T ss_pred HhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHH
Confidence 44322221112223567899999999999999999999999998888888888899999999999999999998766555
Q ss_pred HH-hcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCCe
Q 008342 258 AA-LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFR 336 (569)
Q Consensus 258 ~~-~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~ 336 (569)
.+ .|+++++...+++..+++.++++++|++.++|+.+..++......... ..++| +++||+.+++...+..+.+|++
T Consensus 215 ~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~-~~~lr-~~~gg~~~~~~~~~~~~~~g~~ 292 (529)
T PRK07867 215 ALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDA-DNPLR-IVYGNEGAPGDIARFARRFGCV 292 (529)
T ss_pred HHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCccccc-ccceE-EEecCCCChHHHHHHHHHhCCc
Confidence 44 455555557789999999999999999999999999888765433222 45677 4568888887764444466999
Q ss_pred EecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCC----------CceEEEE
Q 008342 337 ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADG----------KTIGEIV 406 (569)
Q Consensus 337 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~----------~~~Gel~ 406 (569)
+++.||+||+++....+. . ....++|.|.++ ++++|++++.+++.+. +..|||+
T Consensus 293 l~~~YG~TE~~~~~~~~~---~----------~~~~~~g~~~~~---~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~ 356 (529)
T PRK07867 293 VVDGFGSTEGGVAITRTP---D----------TPPGALGPLPPG---VAIVDPDTGTECPPAEDADGRLLNADEAIGELV 356 (529)
T ss_pred EEEeecccccccccccCC---C----------CCCCCcCCCCCC---EEEEECCCCCCCCCCccccccccccCCcceEEE
Confidence 999999999986543221 0 112567888776 6788877788888762 1189999
Q ss_pred E-ecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEe
Q 008342 407 M-RGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVA 485 (569)
Q Consensus 407 v-~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 485 (569)
+ +|++++.||+++++.+...|.+|||+|||+++++++|.+++.||.||+|+++|.+++|.+||++|.++|+|.+++|++
T Consensus 357 i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g 436 (529)
T PRK07867 357 NTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYA 436 (529)
T ss_pred EecCCcccccccCChHhhhhhhcCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEe
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhc--CCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 486 RPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK--MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 486 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~--l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
.+++..|+.+.+++++.++... ..+++.++++++ |+.+++|..+.+++ ||+|++||++|+.|+++....
T Consensus 437 ~~~~~~g~~~~a~vv~~~~~~~-----~~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~~ 508 (529)
T PRK07867 437 VPDPVVGDQVMAALVLAPGAKF-----DPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVDC 508 (529)
T ss_pred ccCCCCCeeEEEEEEECCCCCC-----CHHHHHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCCC
Confidence 9999889999999998776443 457788888765 99999999998777 999999999999999877543
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=554.91 Aligned_cols=516 Identities=17% Similarity=0.186 Sum_probs=398.2
Q ss_pred ccccCHHHHHHHhhhhCCCceeeeeC--C---eeeeHHHHHHHHHHHHHHHHh---cCCCCC-----------CEEEEEc
Q 008342 17 YTALTPLWFINRAATLHPTRKSVVYG--S---KHYTWHQTYRRCRRFASALSK---LSIGLG-----------TTVSVIA 77 (569)
Q Consensus 17 ~~~~~l~~~l~~~a~~~p~~~a~~~~--~---~~~Ty~el~~~~~~la~~L~~---~g~~~g-----------~~V~i~~ 77 (569)
+...|+.++|.++++++|+++|+.+. + +.+||+|+.+++.++|++|.+ +|+++| |+|+|++
T Consensus 58 ~~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~ 137 (746)
T PTZ00342 58 YVYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYG 137 (746)
T ss_pred cccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEc
Confidence 44679999999999999999999873 2 689999999999999999997 499998 9999999
Q ss_pred CCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCC
Q 008342 78 PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDE 157 (569)
Q Consensus 78 ~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 157 (569)
+|+++|+++.|||+++|++.+|+++.++.+++.++|++++++++|++.+....+.+....++ ..++++.+++.
T Consensus 138 ~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~-------~l~~ii~~~~~ 210 (746)
T PTZ00342 138 SNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELP-------HLKKLIILDTL 210 (746)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCC-------CceEEEEECCC
Confidence 99999999999999999999999999999999999999999999998776665554443333 45677777642
Q ss_pred Ccc------------------hhh------------------------------------h---HHhhhcchhhHHhhhh
Q 008342 158 SCD------------------SKQ------------------------------------L---EYALARGAIEYEKFLE 180 (569)
Q Consensus 158 ~~~------------------~~~------------------------------------~---~~~~~~~~~~~~~~l~ 180 (569)
... ... + ..........|+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 290 (746)
T PTZ00342 211 IKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTK 290 (746)
T ss_pred CcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHh
Confidence 110 000 0 0000001122333332
Q ss_pred cCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHh--CCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 181 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIW--GMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
..... ....+..++++++|+|||||||.||||++||+++++.+....... ...+.+++++.+|++|++++...+.++
T Consensus 291 ~~~~~-~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l 369 (746)
T PTZ00342 291 NKTTN-YKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSF 369 (746)
T ss_pred hcccC-CCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence 21111 112234678999999999999999999999999988876554321 233568999999999999998777777
Q ss_pred HhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHcc--------CCCCC-------------------------
Q 008342 259 ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA--------SPEDT------------------------- 305 (569)
Q Consensus 259 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~--------~~~~~------------------------- 305 (569)
+.|+++++.+. ++..+++.|++++||++.++|.+++.|.+. +....
T Consensus 370 ~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 448 (746)
T PTZ00342 370 MLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGI 448 (746)
T ss_pred HcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 77777776654 889999999999999999999999998752 10000
Q ss_pred --------CCCcccceeeeecCCCCCHHHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCc
Q 008342 306 --------ILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGV 376 (569)
Q Consensus 306 --------~~~l~~l~~~~~~g~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 376 (569)
..-.+++|.+++||+++++++.++++. +|+++++.||+||+++.++..... ....+++|.
T Consensus 449 ~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~~-----------~~~~gsvG~ 517 (746)
T PTZ00342 449 THISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHAD-----------DNNTESIGG 517 (746)
T ss_pred HHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccCC-----------CCCcccccC
Confidence 000258999999999999999999984 599999999999998766543211 123478999
Q ss_pred ee-eccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhc-CCeeecCceeEEcCCCeEEEecccCc
Q 008342 377 RT-ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKD 454 (569)
Q Consensus 377 ~~-~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~~~~~g~l~~~GR~~d 454 (569)
|+ +++ +++++|.+++.....+ ..|||+++|++++.|||++++.+.+.|. +|||+|||+|++++||+++|.||.+|
T Consensus 518 p~~pg~-e~ki~d~~~~~~~~~~--~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kd 594 (746)
T PTZ00342 518 PISPNT-KYKVRTWETYKATDTL--PKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKG 594 (746)
T ss_pred cCCCcE-EEEEecccccccCCCC--CceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCC
Confidence 98 999 6999986544444333 4699999999999999999999999995 99999999999999999999999999
Q ss_pred eEE-eCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcch----------------hhh-h-----
Q 008342 455 VII-SGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE----------------LDK-G----- 511 (569)
Q Consensus 455 ~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~----------------~~~-~----- 511 (569)
+|+ .+|++|+|.+||++|.+||.|.+|+|++.+.. ..++|+|++....-. .+. +
T Consensus 595 lIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~---~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~ 671 (746)
T PTZ00342 595 LVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSM---DGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDE 671 (746)
T ss_pred eEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCc---cccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhh
Confidence 999 58999999999999999999999999986432 248888887652110 000 0
Q ss_pred -----hHHHHHHHHH-----HhcCCCCcCCceEEecc--CC----CCCCCcccHHHHHHHHHh
Q 008342 512 -----KLAEDVSKFC-----RAKMPSYWVPKSVVFAA--LP----KSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 512 -----~~~~~l~~~~-----~~~l~~~~~p~~i~~~~--lP----~t~~GKi~r~~l~~~~~~ 558 (569)
...+.+.+.+ +..|+.|.+++.|.+.. +- +||+-|+.|+.+.+.|+.
T Consensus 672 ~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~ 734 (746)
T PTZ00342 672 TINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAF 734 (746)
T ss_pred hhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHH
Confidence 0112222222 23599999999988654 32 799999999999998884
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=540.70 Aligned_cols=501 Identities=24% Similarity=0.368 Sum_probs=410.9
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
-|...++.++++++++.+|+++|+++.++++||+||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus 19 ~~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~ 98 (527)
T TIGR02275 19 YWQDKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGI 98 (527)
T ss_pred cccCCcHHHHHHHHHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCe
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHH-HHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhh
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL-AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIE 174 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (569)
+++++++..+.+++.++++.+++++++++...... .....+..... ......++...+.... ..
T Consensus 99 ~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------------~~ 163 (527)
T TIGR02275 99 APVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSK---LPTLRNIIVAGQTRVE------------AE 163 (527)
T ss_pred EEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhh---CCcceEEEEecCCCCc------------ch
Confidence 99999999999999999999999999998764211 11111111100 0012333333221100 00
Q ss_pred HHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHH-
Q 008342 175 YEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY- 253 (569)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~- 253 (569)
+...+....... ......++++++++|||||||.||+|.+||.++..........+.++++|++++.+|++|.+++..
T Consensus 164 ~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~ 242 (527)
T TIGR02275 164 LFLWLESPAEPV-KFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSP 242 (527)
T ss_pred hhHHhhCcCccc-cCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHH
Confidence 111111111111 112346789999999999999999999999999988887777888999999999999999999864
Q ss_pred -HHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh
Q 008342 254 -TWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ 332 (569)
Q Consensus 254 -~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~ 332 (569)
.+..+..|+++++.+.+++..+++.++++++|++.++|.++..+.+........ ++++|.+++||+++++++.+++.+
T Consensus 243 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~ 321 (527)
T TIGR02275 243 GALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYD-LSSLKLLQVGGAKFSEAAARRVPA 321 (527)
T ss_pred HHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCC-ccceEEEEEcCCCCCHHHHHHHHH
Confidence 556666777777767789999999999999999999999999998776554444 789999999999999999999985
Q ss_pred -cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceee-ccCCceeeeCCCCcccCCCCCceEEEEEecC
Q 008342 333 -KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTI-CLDGLDVIDARTNQPVPADGKTIGEIVMRGS 410 (569)
Q Consensus 333 -~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~ 410 (569)
+|+++++.||+||++....... . .......++|.|++ +. .++++|++ +++++.| +.|||+++|+
T Consensus 322 ~~g~~~~~~YG~tE~~~~~~~~~-~---------~~~~~~~~~G~~~~~~~-~v~i~d~~-g~~~~~g--~~Gei~v~g~ 387 (527)
T TIGR02275 322 VFGCQLQQVFGMAEGLVNYTRLD-D---------PAEIIFTTQGRPMSPDD-EVRVVDDH-GNPVAPG--ETGMLLTRGP 387 (527)
T ss_pred HhCCeEEeeeccCccCccccCCC-C---------ccccccccCCCCCCCCc-eEEEECCC-CCCCCCC--CceEEEecCC
Confidence 5999999999999653322111 0 01122357899985 55 68899876 8888877 7899999999
Q ss_pred cccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCC
Q 008342 411 CVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489 (569)
Q Consensus 411 ~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 489 (569)
+++.||+++++.+...| .+|||+|||+|+++++|++++.||.+|+|+++|.+|+|.+||++|.++|+|.+++|++.+++
T Consensus 388 ~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~ 467 (527)
T TIGR02275 388 YTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDE 467 (527)
T ss_pred ccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCc
Confidence 99999999999888887 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhc-CCCCcCCceEEecc-CCCCCCCcccHHHHH
Q 008342 490 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVFAA-LPKSATGKIQKHLLR 553 (569)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (569)
..++.+.+++++.++. . ...+|.+++++. ++.|++|..+.+++ ||+|++||++|+.|+
T Consensus 468 ~~~~~~~a~vv~~~~~-~-----~~~~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 468 LLGEKSCAFIVVRDPA-L-----KAAQLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred ccccEEEEEEEECCCC-C-----CHHHHHHHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence 8889999999876653 2 457899999985 99999999999777 999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-66 Score=554.95 Aligned_cols=506 Identities=21% Similarity=0.258 Sum_probs=401.4
Q ss_pred cccCHHHHHHHhhhhCCCceeeeeCC---------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHH
Q 008342 18 TALTPLWFINRAATLHPTRKSVVYGS---------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQF 88 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 88 (569)
...|+.++|+++++.+|+++|+++.+ +.+||+||.++++++|++|.+. +++||+|+++++|++++++++|
T Consensus 19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~l 97 (631)
T PRK07769 19 PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFF 97 (631)
T ss_pred ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHH
Confidence 45789999999999999999998732 5799999999999999999987 8999999999999999999999
Q ss_pred HhhhcCceEeec-cccCC--HHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhH
Q 008342 89 GAPMAGAVLNSI-NIRLN--ATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE 165 (569)
Q Consensus 89 A~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (569)
||+++|++++|+ ++..+ .+++.+++++++++++|++.+....+.......+. .....++.++....
T Consensus 98 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~------ 166 (631)
T PRK07769 98 GALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPA-----KERPRVIAVDAVPD------ 166 (631)
T ss_pred HHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccc-----cccceEEEcccccc------
Confidence 999999999999 55554 68899999999999999988765544433222210 01123333322100
Q ss_pred HhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCc
Q 008342 166 YALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPM 245 (569)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~ 245 (569)
... .. .......++++++|+|||||||.||+|++||+++..........+++.++|+++..+|+
T Consensus 167 ------------~~~---~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl 230 (631)
T PRK07769 167 ------------EVG---AT-WVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPF 230 (631)
T ss_pred ------------ccc---cc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCC
Confidence 000 00 00112456899999999999999999999999999888777778889999999999999
Q ss_pred cchhhHHHHHHHHHhcceEEEecc--C--ChHHHHHHHHhcCc---cEEeehHHHHHHHHcc---CCC--CCCCCcccce
Q 008342 246 FHGNGWSYTWSLAALCGTSICLRQ--V--TAKAVYTAIATHGV---THFCAAPVVLNAIANA---SPE--DTILPLTNVV 313 (569)
Q Consensus 246 ~~~~g~~~~~~~~~~g~~~~~~~~--~--~~~~~~~~i~~~~~---t~l~~~P~~~~~l~~~---~~~--~~~~~l~~l~ 313 (569)
+|.+|+...+.+++.|++++++.+ + ++..+++.++++++ +++.++|.++..+... ... .... ++++|
T Consensus 231 ~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~-l~~lr 309 (631)
T PRK07769 231 FHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLD-LSNVK 309 (631)
T ss_pred cCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcc-hhhee
Confidence 999999887778888888887743 4 88999999999986 7899999988766643 111 1223 78999
Q ss_pred eeeecCCCCCHHHHHHhhhc----CC---eEecccccccCCCCccccccCCCCCCC----------------Cchhhhhc
Q 008342 314 NVNTAGAPPPPSLLFAMSQK----GF---RITHTYGLTELTGPASVCAWKPEWDSL----------------PFETQARL 370 (569)
Q Consensus 314 ~~~~~g~~l~~~~~~~~~~~----~~---~i~~~YG~tE~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 370 (569)
.+++||+++++++.+++.+. |+ .+++.||+||+++.++........... ........
T Consensus 310 ~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 389 (631)
T PRK07769 310 GLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVA 389 (631)
T ss_pred eEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCcee
Confidence 99999999999999988753 33 599999999997655443221110000 00001112
Q ss_pred cccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhc------------------CCee
Q 008342 371 NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA------------------NGWF 432 (569)
Q Consensus 371 ~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~------------------~g~~ 432 (569)
..++|.|.++. .++|+|++++++++.| +.|||+++|++++.|||++++.+.+.|. +|||
T Consensus 390 ~~s~G~~~~~~-~~~ivd~~~g~~~~~g--e~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~ 466 (631)
T PRK07769 390 QVSAGKVGVSE-WAVIVDPETASELPDG--QIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWV 466 (631)
T ss_pred EEeCCCcCCCc-EEEEEcCCCCcCCCCC--CEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCee
Confidence 35789999999 6999998889999888 8999999999999999999999988884 3899
Q ss_pred ecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhc-CCCcee--eEEEeecC-------------------CC
Q 008342 433 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL-HPLVLE--AAVVARPD-------------------ER 490 (569)
Q Consensus 433 ~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~--~~v~~~~~-------------------~~ 490 (569)
+|||+|+++ +|+++|+||.||+|+++|++|+|.|||++|.+ ||.|.+ ++|++.++ +.
T Consensus 467 ~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~ 545 (631)
T PRK07769 467 RTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPED 545 (631)
T ss_pred eccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCC
Confidence 999999996 99999999999999999999999999999986 899998 89998887 55
Q ss_pred CCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCC-Cc-CCceEEecc---CCCCCCCcccHHHHHHHHHhcC
Q 008342 491 WGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPS-YW-VPKSVVFAA---LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~-~p~~i~~~~---lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
.|+.+++++++.++.... ..++|.++|+++++. ++ .|..+.+++ ||+|++||++|++|++.+.+..
T Consensus 546 ~ge~~~a~v~~~~~~~~~----~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~~~ 616 (631)
T PRK07769 546 TSEQLVIVAERAPGAHKL----DPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDGS 616 (631)
T ss_pred CCccEEEEEEecCccccc----cHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHcCC
Confidence 788899999988753221 457899999999885 56 477776653 9999999999999999987553
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=541.39 Aligned_cols=502 Identities=29% Similarity=0.400 Sum_probs=409.2
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeC------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHH
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYG------SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFG 89 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA 89 (569)
-|.+.++.+++++++..+|+++|++.. ++.+||+||++++.++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la 97 (538)
T TIGR03208 18 LWRDRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLA 97 (538)
T ss_pred ccccCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 345678999999999999999999862 36899999999999999999999999999999999999999999999
Q ss_pred hhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHH-HHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhh
Q 008342 90 APMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL-AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYAL 168 (569)
Q Consensus 90 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (569)
|+++|++++|+++.++.+++.++++.++++++|+++..... .......... .......++.++....
T Consensus 98 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------- 165 (538)
T TIGR03208 98 CARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQS---KLPALRQVVVIDGDGD--------- 165 (538)
T ss_pred HHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhc---cCCcceEEEEecCCCC---------
Confidence 99999999999999999999999999999999998764311 0111111110 0002334555443211
Q ss_pred hcchhhHHhhhhcCCCC--C-----CCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEE
Q 008342 169 ARGAIEYEKFLETGDPE--F-----AWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLW 241 (569)
Q Consensus 169 ~~~~~~~~~~l~~~~~~--~-----~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~ 241 (569)
..++.++...... . .......++++++++|||||||.||+|.++|+++..........++++.+|++++
T Consensus 166 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~ 241 (538)
T TIGR03208 166 ----DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILM 241 (538)
T ss_pred ----cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEE
Confidence 1233332211100 0 0112246689999999999999999999999999988888888888999999999
Q ss_pred cCCccchhhHHHH-HHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCC
Q 008342 242 TLPMFHGNGWSYT-WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGA 320 (569)
Q Consensus 242 ~~p~~~~~g~~~~-~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~ 320 (569)
.+|++|..|+... +..+..|+++++...+++..+++.++++++|++.++|.++..+.......... ++++|.+++||+
T Consensus 242 ~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~-~~~l~~~~~gG~ 320 (538)
T TIGR03208 242 ASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAP-VPSLFTFLCAGA 320 (538)
T ss_pred eCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCC-CCcceEEEEcCC
Confidence 9999999887654 44556677777667789999999999999999999999999888754333333 789999999999
Q ss_pred CCCHHHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCC
Q 008342 321 PPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADG 399 (569)
Q Consensus 321 ~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~ 399 (569)
++++++.+++.+ +++++++.||+||++++.+.+.... ......++|.|.+++ .++|+|++ +++++.|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~g~-~v~i~~~~-~~~~~~g- 388 (538)
T TIGR03208 321 PIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDA---------LEKASTTDGRPLPGV-EVKVIDAN-GAKLSQG- 388 (538)
T ss_pred CCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccc---------hhhccCcccccCCCC-EEEEECCC-CCCCcCC-
Confidence 999999998874 5899999999999987665432110 111235789999999 69999976 8888877
Q ss_pred CceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCce
Q 008342 400 KTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL 479 (569)
Q Consensus 400 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~ 479 (569)
+.|||+++|+.++.||+++++.+.. ..+|||+|||+|+++++|.++++||.+|+|+.+|.+|+|.+||++|.++|.|.
T Consensus 389 -~~Gel~v~g~~~~~gy~~~~~~~~~-~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~ 466 (538)
T TIGR03208 389 -ETGRLLVRGCSNFGGYLKRPHLNST-DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVA 466 (538)
T ss_pred -CCcEEEEecCcccccccCCcccccc-cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCccee
Confidence 7899999999999999999877653 36889999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHh-cCCCCcCCceEEecc-CCCCCCCcccHHHHH
Q 008342 480 EAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLR 553 (569)
Q Consensus 480 ~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (569)
+++|++.++...|+.+.+++++.++... ..+++.+++++ +++.+++|..+.+++ ||+|++||++|++|+
T Consensus 467 ~~~v~~~~~~~~g~~~~a~v~~~~~~~~-----~~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 467 QVAIVAYPDERLGERACAVVVPKPGCTL-----DFAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred eEEEEeccCCCCCceEEEEEEECCCCCC-----CHHHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence 9999999988888999999998765433 45678889985 799999999998777 999999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-65 Score=537.49 Aligned_cols=499 Identities=26% Similarity=0.336 Sum_probs=419.6
Q ss_pred CHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeec
Q 008342 21 TPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSI 100 (569)
Q Consensus 21 ~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 100 (569)
+++++|+++++.+|+++|+.+.++++||+||.+++.++|++|.+.|+++|++|+++++|++++++++|||+++|++++|+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 80 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPI 80 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhh
Q 008342 101 NIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLE 180 (569)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 180 (569)
++.++.+++..+++.++++++|++.+....+........ ....++.+++...... .......|+++..
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 148 (515)
T TIGR03098 81 NPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCH-------DLRTLILVGEPAHASE-----GGGESPSWPKLLA 148 (515)
T ss_pred CCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhccc-------ccceEEEecCcccccC-----CccccccHHHhhc
Confidence 999999999999999999999998876655544332222 2344555554321100 1122345666554
Q ss_pred cCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHHh
Q 008342 181 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAAL 260 (569)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~ 260 (569)
..... ...+...+++++++|||||||.||+|.+||.++..........+++..+|++++.+|++|.+|+...+.++..
T Consensus 149 ~~~~~--~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~ 226 (515)
T TIGR03098 149 LGDAD--PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYV 226 (515)
T ss_pred ccccc--ccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHc
Confidence 33221 1123456789999999999999999999999999888877778889999999999999999999888888888
Q ss_pred cceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc--CCeEe
Q 008342 261 CGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRIT 338 (569)
Q Consensus 261 g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~--~~~i~ 338 (569)
|+++++.+.+++..+++.++++++|++.++|+++..|.+..... .. +.++|.++++|+++++++.+.+++. +.+++
T Consensus 227 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~-~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 304 (515)
T TIGR03098 227 GATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPE-SA-APSLRYLTNSGGAMPRATLSRLRSFLPNARLF 304 (515)
T ss_pred CCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccCC-CC-ccceEEEEecCCcCCHHHHHHHHHHCCCCeEe
Confidence 99988888889999999999999999999999999998753222 22 7889999999999999999999854 78999
Q ss_pred cccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccC
Q 008342 339 HTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 418 (569)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~ 418 (569)
+.||+||++....... .......+++|.|.+++ +++|+|++ +++++.+ +.|||+++|+.++.||++
T Consensus 305 ~~YG~tE~~~~~~~~~----------~~~~~~~~~vG~~~~~~-~~~i~~~~-~~~~~~~--~~Gel~v~g~~~~~gy~~ 370 (515)
T TIGR03098 305 LMYGLTEAFRSTYLPP----------EEVDRRPDSIGKAIPNA-EVLVLRED-GSECAPG--EEGELVHRGALVAMGYWN 370 (515)
T ss_pred eeeccccccceEeccc----------ccccCCCCCcceecCCC-EEEEECCC-CCCCCCC--CceEEEEcCchhhccccC
Confidence 9999999875432211 11122347899999999 69999865 8888776 789999999999999999
Q ss_pred Ccchhhhhhc------------CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEee
Q 008342 419 NPKANEEAFA------------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 486 (569)
Q Consensus 419 ~~~~~~~~~~------------~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 486 (569)
+++.+...|. ++|++|||+|+++++|.+++.||.+|+|+.+|.+|+|.+||++|.++|.|.+++|++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~ 450 (515)
T TIGR03098 371 DPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGV 450 (515)
T ss_pred CchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEec
Confidence 9888766653 3489999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHH
Q 008342 487 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 554 (569)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (569)
+++..|+.++++++....... ..+++.++++++++.+++|..+++++ ||+|++||++|++|++
T Consensus 451 ~~~~~g~~~~~~~~~~~~~~~-----~~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 451 PDPTLGQAIVLVVTPPGGEEL-----DRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred cCcccCceEEEEEEeCCCCCC-----CHHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 999889999998886554333 45789999999999999999999877 9999999999999964
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-65 Score=540.91 Aligned_cols=502 Identities=28% Similarity=0.411 Sum_probs=413.7
Q ss_pred cccCHHHHHHHhhhhCCCceeeeeC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 18 TALTPLWFINRAATLHPTRKSVVYG--SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
..+|+.+++.+++..+|+++|+.+. ++.+||.||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 26 ~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 105 (546)
T PLN02330 26 DKLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGG 105 (546)
T ss_pred CCCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCc
Confidence 3578999999999999999999874 57899999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhH
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEY 175 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (569)
+++|+++..+.+++.++++.++++++++++...+.+... ...++.+.+... .....|
T Consensus 106 ~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~-------------~~~~i~~~~~~~----------~~~~~~ 162 (546)
T PLN02330 106 VFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL-------------GLPVIVLGEEKI----------EGAVNW 162 (546)
T ss_pred EeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc-------------CCcEEEecCCCC----------CCcccH
Confidence 999999999999999999999999999998866554321 122444433211 122445
Q ss_pred HhhhhcCCCCCC--CCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCC----CCcEEEEcCCccchh
Q 008342 176 EKFLETGDPEFA--WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMN----EGAVFLWTLPMFHGN 249 (569)
Q Consensus 176 ~~~l~~~~~~~~--~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~----~~d~~~~~~p~~~~~ 249 (569)
.+++........ .......+++++++|||||||.||+|.++|.++....... .+++. ..++++..+|++|.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~p~~h~~ 240 (546)
T PLN02330 163 KELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSS--LFSVGPEMIGQVVTLGLIPFFHIY 240 (546)
T ss_pred HHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHH--hhccCccccCceEEEEecChHHHH
Confidence 555544322111 1122456789999999999999999999999987765432 22332 346789999999999
Q ss_pred hHHHHHH-HHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcc--cceeeeecCCCCCHHH
Q 008342 250 GWSYTWS-LAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT--NVVNVNTAGAPPPPSL 326 (569)
Q Consensus 250 g~~~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~--~l~~~~~~g~~l~~~~ 326 (569)
|+...+. .+..|+++++...+++..+++.++++++|.+.++|+++..+.......... +. .+|.++++|+++++++
T Consensus 241 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~-~~~~~l~~i~~~g~~l~~~~ 319 (546)
T PLN02330 241 GITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFD-LSKLKLQAIMTAAAPLAPEL 319 (546)
T ss_pred HHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccc-cchheeeeEEEcCCcCCHHH
Confidence 8865444 445677777778899999999999999999999999999998765433332 33 5789999999999999
Q ss_pred HHHhhh-c-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEE
Q 008342 327 LFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGE 404 (569)
Q Consensus 327 ~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 404 (569)
.+++.+ + ++++++.||+||++.+...+..... ........++|.|++++ +++++|+++++++|.| +.||
T Consensus 320 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~------~~~~~~~~~vG~~~~~~-~v~i~d~~~~~~~p~g--~~Ge 390 (546)
T PLN02330 320 LTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEK------GHGIAKKNSVGFILPNL-EVKFIDPDTGRSLPKN--TPGE 390 (546)
T ss_pred HHHHHHHcCCCeEEecccccccccceecCCCccc------cccccccCccccccCCc-EEEEEeCCCCccCCCC--CceE
Confidence 999984 4 8999999999999865543321110 00112236799999999 6999998889999988 7899
Q ss_pred EEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEE
Q 008342 405 IVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483 (569)
Q Consensus 405 l~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 483 (569)
|+++|+.++.||++++..+...+ .+|||+|||++++++||.+++.||.+|+|+++|.+|+|.+||.+|.+++.|.+++|
T Consensus 391 l~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 470 (546)
T PLN02330 391 LCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV 470 (546)
T ss_pred EEEecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEE
Confidence 99999999999999998888777 47999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 484 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
++.+++..|+.+.++++..++... ..+++.++++++|+.+++|..+.+++ ||+|++||++|++|++++...
T Consensus 471 ~~~~~~~~g~~~~a~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~ 542 (546)
T PLN02330 471 VPLPDEEAGEIPAACVVINPKAKE-----SEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSI 542 (546)
T ss_pred EeccccccCceeEEEEEECCCCCC-----CHHHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence 999998889999999988765433 45789999999999999999888766 999999999999999998765
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=532.11 Aligned_cols=496 Identities=24% Similarity=0.327 Sum_probs=416.8
Q ss_pred ccCHHHHHHHhhhhCCCceeeee-CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 19 ALTPLWFINRAATLHPTRKSVVY-GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
..++.+++.+.+ .+|+++|+.+ .++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~ 80 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF 80 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 357899999999 9999999988 56889999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHh
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEK 177 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (569)
+|+++.++.+++..+++.++++++++++.....+....... ....++.++.... ..+.+
T Consensus 81 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-------------~~~~~ 139 (504)
T PRK07514 81 LPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA--------GAPHVETLDADGT-------------GSLLE 139 (504)
T ss_pred EECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc--------CCceEEEecCCCc-------------ccHHH
Confidence 99999999999999999999999999987665554432221 1233444433211 01111
Q ss_pred hhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHH-H
Q 008342 178 FLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW-S 256 (569)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~-~ 256 (569)
....... .........+++++++|||||||.||+|.++|.++...+......+++.++|++++..|++|..|+.... .
T Consensus 140 ~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 218 (504)
T PRK07514 140 AAAAAPD-DFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNV 218 (504)
T ss_pred hhhhcCc-ccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHH
Confidence 1111111 1112234678999999999999999999999999999888877788999999999999999999986544 4
Q ss_pred HHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-cCC
Q 008342 257 LAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGF 335 (569)
Q Consensus 257 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~~~ 335 (569)
....|+++++.+..++..+++.+. ++|++.++|.++..++......... ++++|.+++||+++++++.+.+.+ .+.
T Consensus 219 ~l~~G~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~~~~~~~~~~~~~~~~ 295 (504)
T PRK07514 219 ALLAGASMIFLPKFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRLTREA-AAHMRLFISGSAPLLAETHREFQERTGH 295 (504)
T ss_pred HHhcCcEEEECCCCCHHHHHHHHH--hheeeecHHHHHHHHHcCCCCCccc-ccceeeEEecCCCCCHHHHHHHHHHhCC
Confidence 455677777777789999999993 7999999999999998775444444 789999999999999999999985 488
Q ss_pred eEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccccc
Q 008342 336 RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKG 415 (569)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~g 415 (569)
++++.||+||++....... .......++|.|.+++ +++|+|++++++++.| +.|||+++|+.++.|
T Consensus 296 ~~~~~YG~tE~~~~~~~~~-----------~~~~~~~~~G~~~~~~-~v~i~d~~~~~~~~~g--~~Gel~i~~~~~~~g 361 (504)
T PRK07514 296 AILERYGMTETNMNTSNPY-----------DGERRAGTVGFPLPGV-SLRVTDPETGAELPPG--EIGMIEVKGPNVFKG 361 (504)
T ss_pred cceeecccccccccccCCc-----------cccccCcccccCCCCc-EEEEEECCCCCCCCCC--CceEEEEecCCcccc
Confidence 9999999999975443211 0111236789999999 6999997889999987 789999999999999
Q ss_pred ccCCcchhhhhhc-CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCce
Q 008342 416 YLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 494 (569)
Q Consensus 416 y~~~~~~~~~~~~-~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~ 494 (569)
|++++..+...|. ++||+|||+++++++|.+++.||.||+|+++|.+++|.+||..+.++++|.+++|++.+++..++.
T Consensus 362 y~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~ 441 (504)
T PRK07514 362 YWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEG 441 (504)
T ss_pred ccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCce
Confidence 9999999988886 889999999999999999999999999999999999999999999999999999999998888888
Q ss_pred eeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 495 PCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 495 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
++++++..++... ..+++.+.++++++.+++|..+++++ +|+|++||++|++|++++.+.
T Consensus 442 ~~~~~~~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~ 502 (504)
T PRK07514 442 VTAVVVPKPGAAL-----DEAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADL 502 (504)
T ss_pred EEEEEEECCCCCC-----CHHHHHHHHHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence 9999988765543 45789999999999999999998777 999999999999999988764
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-65 Score=533.49 Aligned_cols=499 Identities=23% Similarity=0.361 Sum_probs=409.0
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCC-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcC
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGS-----KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~-----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 94 (569)
.++.+++++.++++|+++|+++.+ +.+||.||.++++++|++|.++|+++||+|+++++|+.++++++|||+++|
T Consensus 7 ~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G 86 (517)
T PRK08008 7 QHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIG 86 (517)
T ss_pred ccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 479999999999999999999865 789999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhh
Q 008342 95 AVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIE 174 (569)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (569)
+++++++++++.+++.+++++++++++|++.+....+.+...... .....++....... ...+...
T Consensus 87 ~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--------~~~~~~~ 152 (517)
T PRK08008 87 AIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDA------TPLRHICLTRVALP--------ADDGVSS 152 (517)
T ss_pred eEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcc------ccCcEEEEecCCCc--------ccccccC
Confidence 999999999999999999999999999999887665555433221 02334444433211 1122344
Q ss_pred HHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHH
Q 008342 175 YEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT 254 (569)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 254 (569)
+.++............+...+++++++|||||||.||+|.+||.++............+.+++++++.+|++|..+....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 232 (517)
T PRK08008 153 FTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTA 232 (517)
T ss_pred HHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHH
Confidence 55444333222222233456899999999999999999999999987655433334457889999999999998776544
Q ss_pred HH-HHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-
Q 008342 255 WS-LAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ- 332 (569)
Q Consensus 255 ~~-~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~- 332 (569)
+. .+..|+++++...+++..+++.++++++|++.++|.+++.+.......... ..+++.+.++ ++++++...++.+
T Consensus 233 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~ 310 (517)
T PRK08008 233 AMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDR-QHCLREVMFY-LNLSDQEKDAFEER 310 (517)
T ss_pred HHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccc-cccceeeEEe-cCCCHHHHHHHHHH
Confidence 44 455677777777889999999999999999999999999988765443322 4667777665 4788888888774
Q ss_pred cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEec---
Q 008342 333 KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG--- 409 (569)
Q Consensus 333 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~--- 409 (569)
+++++++.||+||+++.++...... ....+++|.|.+++ +++++|++ +++++.+ +.|||+++|
T Consensus 311 ~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~~~~g~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~ 376 (517)
T PRK08008 311 FGVRLLTSYGMTETIVGIIGDRPGD----------KRRWPSIGRPGFCY-EAEIRDDH-NRPLPAG--EIGEICIKGVPG 376 (517)
T ss_pred hCCeEEeeccccccccccccCCccc----------cccCCccccCCCCc-EEEEECCC-CCCCCCC--CcceEEEeCCCC
Confidence 4999999999999986554432211 12236899999999 69999976 8888887 789999998
Q ss_pred CcccccccCCcchhhhhhc-CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecC
Q 008342 410 SCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488 (569)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 488 (569)
++++.||+++++.+.+.|. +|||+|||+++++++|.++++||.+|+|+.+|++++|.+||.++.+++.|.+++|++.++
T Consensus 377 ~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~ 456 (517)
T PRK08008 377 KTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKD 456 (517)
T ss_pred cchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCC
Confidence 5899999999999988884 799999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHH
Q 008342 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLR 553 (569)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (569)
+..++.+.+++++..+... ..+++.++++++++.+++|..+.+++ ||+|++||++|+.|+
T Consensus 457 ~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 457 SIRDEAIKAFVVLNEGETL-----SEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred CCCCceEEEEEEECCCCCC-----CHHHHHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence 8888889999998876443 45789999999999999999998777 999999999999874
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=553.31 Aligned_cols=520 Identities=22% Similarity=0.267 Sum_probs=398.1
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeC------------C-----------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYG------------S-----------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSV 75 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~------------~-----------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i 75 (569)
-.|+.++|+++++.+|+++|+.+. + ..+||+|+.++++++|++|.++|+++||+|+|
T Consensus 57 ~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai 136 (696)
T PLN02387 57 ATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAI 136 (696)
T ss_pred CCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 368999999999999999999431 1 23899999999999999999999999999999
Q ss_pred EcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEec
Q 008342 76 IAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIG 155 (569)
Q Consensus 76 ~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 155 (569)
+++|+++|++++|||+++|++++|+++.++.+++.++|++++++++|++.+....+......++ ...+++.++
T Consensus 137 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~-------~l~~ii~~~ 209 (696)
T PLN02387 137 FADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLE-------TVKRVIYMD 209 (696)
T ss_pred EcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccC-------CceEEEEEC
Confidence 9999999999999999999999999999999999999999999999999876665554443333 456777776
Q ss_pred CCCcchhhh-HHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHh-CC
Q 008342 156 DESCDSKQL-EYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIW-GM 233 (569)
Q Consensus 156 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~-~~ 233 (569)
+........ .........+|++++..............++++++|+|||||||.||||++||++++.........+ ++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~ 289 (696)
T PLN02387 210 DEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKL 289 (696)
T ss_pred CCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCC
Confidence 532211100 0001112345666655433222222234678999999999999999999999999988877665543 57
Q ss_pred CCCcEEEEcCCccchhhHHHHHHHHHhcceEEEeccCC--------hHHHHHHHHhcCccEEeehHHHHHHHHccCCCC-
Q 008342 234 NEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVT--------AKAVYTAIATHGVTHFCAAPVVLNAIANASPED- 304 (569)
Q Consensus 234 ~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~- 304 (569)
.++|++++.+|++|.+++.....++..|+++.+..... +..++..+++++||++.++|.+++.+.+.....
T Consensus 290 ~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~ 369 (696)
T PLN02387 290 GKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKV 369 (696)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHH
Confidence 89999999999999999887666666666554432211 234567899999999999999999887532100
Q ss_pred ------------------------------CC---------------CCcccceeeeecCCCCCHHHHHHhhh-cCCeEe
Q 008342 305 ------------------------------TI---------------LPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRIT 338 (569)
Q Consensus 305 ------------------------------~~---------------~~l~~l~~~~~~g~~l~~~~~~~~~~-~~~~i~ 338 (569)
.. ...+++|.+++||+++++++.+.++. +|++++
T Consensus 370 ~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~ 449 (696)
T PLN02387 370 DAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIG 449 (696)
T ss_pred hcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCee
Confidence 00 00158999999999999999888874 599999
Q ss_pred cccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeC-CCCcccCCCCCceEEEEEecCccccccc
Q 008342 339 HTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDA-RTNQPVPADGKTIGEIVMRGSCVMKGYL 417 (569)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~-~~~~~~~~~~~~~Gel~v~~~~~~~gy~ 417 (569)
+.||+||+++.++.+... ....+++|.|++++ +++|+|. +.+..+.......|||+++|++++.|||
T Consensus 450 ~~YG~TEt~~~~~~~~~~-----------~~~~gsvG~p~p~~-evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~ 517 (696)
T PLN02387 450 QGYGLTETCAGATFSEWD-----------DTSVGRVGPPLPCC-YVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYF 517 (696)
T ss_pred EeechhhcccceeecCcc-----------cCCCCccCCCCCce-EEEEeeccccCcccCCCCCCCceEEeccCcccchhc
Confidence 999999998766554321 11247899999999 6999994 4333322111136999999999999999
Q ss_pred CCcchhhhhhc---CC--eeecCceeEEcCCCeEEEecccCceEEe-CceeechHHHHHHHhcCCCceeeEEEeecCCCC
Q 008342 418 KNPKANEEAFA---NG--WFHSGDLAVKHPDNYIEIKDRLKDVIIS-GGENISSVEVEKVLYLHPLVLEAAVVARPDERW 491 (569)
Q Consensus 418 ~~~~~~~~~~~---~g--~~~tGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 491 (569)
++++.+.+.|. +| ||+|||+|++|+||+++|.||.+|+||. +|++|+|.+||++|.+||.|.+++|++.+..
T Consensus 518 ~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~-- 595 (696)
T PLN02387 518 KNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFH-- 595 (696)
T ss_pred CCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCc--
Confidence 99999999983 34 9999999999999999999999999996 6999999999999999999999999987633
Q ss_pred CceeeEEEEecCCcch----------h------hhhhHHHHHHHHH-----HhcCCCCcCCceEEecc--CC-----CCC
Q 008342 492 GESPCAFVTLKPEADE----------L------DKGKLAEDVSKFC-----RAKMPSYWVPKSVVFAA--LP-----KSA 543 (569)
Q Consensus 492 g~~~~~~v~~~~~~~~----------~------~~~~~~~~l~~~~-----~~~l~~~~~p~~i~~~~--lP-----~t~ 543 (569)
..++++|++.+..-. . ......+.+.+.+ +.+|+.+.+|+.+.+.. +- +|+
T Consensus 596 -~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~ 674 (696)
T PLN02387 596 -SYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTA 674 (696)
T ss_pred -ceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCCh
Confidence 247788877653210 0 0011223333333 34699999999998765 22 689
Q ss_pred CCcccHHHHHHHHHhcC
Q 008342 544 TGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 544 ~GKi~r~~l~~~~~~~~ 560 (569)
+.|+.|+.+++.|+++-
T Consensus 675 t~K~~R~~i~~~y~~~i 691 (696)
T PLN02387 675 ALKLKREQIRKKFKDDL 691 (696)
T ss_pred hhhhhhHHHHHHHHHHH
Confidence 99999999999998753
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=533.34 Aligned_cols=501 Identities=24% Similarity=0.364 Sum_probs=411.7
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
.|.+.++.++|+++++ |+++|+++.++++||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus 21 ~~~~~~~~~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~ 98 (536)
T PRK10946 21 YWQDLPLTDILTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGV 98 (536)
T ss_pred eecCccHHHHHHHhhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCe
Confidence 3567899999999997 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchH-----HHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhc
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFS-----LAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALAR 170 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (569)
+++++.+.....++..+++.+++++++++.+... .........+ ....++..++.
T Consensus 99 v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~------------- 158 (536)
T PRK10946 99 APVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHS-------SLRVVLLLNDD------------- 158 (536)
T ss_pred EEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCC-------CceEEEEecCC-------------
Confidence 8887777777888999999999999999865321 1111111111 12223322211
Q ss_pred chhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhh
Q 008342 171 GAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 250 (569)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 250 (569)
+...+.+++........ ..+..++++++++|||||||.||+|.+||.++..........+++.++|++++.+|++|.++
T Consensus 159 ~~~~~~~~~~~~~~~~~-~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~ 237 (536)
T PRK10946 159 GEHSLDDAINHPAEDFT-ATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYP 237 (536)
T ss_pred CCccHHHHhhCcccccc-cCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCcccccc
Confidence 11223333333222111 22346789999999999999999999999999999888888889999999999999999988
Q ss_pred HHH--HHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCC-CCCCCcccceeeeecCCCCCHHHH
Q 008342 251 WSY--TWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTAGAPPPPSLL 327 (569)
Q Consensus 251 ~~~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~l~~~~~~g~~l~~~~~ 327 (569)
+.. .+..+..|+++++...+++..+++.++++++|++.++|.++..++..... .....+++++.+++||+++++++.
T Consensus 238 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~ 317 (536)
T PRK10946 238 MSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLA 317 (536)
T ss_pred chhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHH
Confidence 753 55566778887777788999999999999999999999999999876311 111227889999999999999999
Q ss_pred HHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCcee-eccCCceeeeCCCCcccCCCCCceEEE
Q 008342 328 FAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT-ICLDGLDVIDARTNQPVPADGKTIGEI 405 (569)
Q Consensus 328 ~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~i~d~~~~~~~~~~~~~~Gel 405 (569)
+++.+ +++++++.||+||++.....+ .. .......++|.|+ +++ .++++|++ +++++.| +.|||
T Consensus 318 ~~~~~~~g~~~~~~YG~tE~~~~~~~~-~~---------~~~~~~~~~G~p~~~~~-~v~i~d~~-~~~~~~g--~~Gel 383 (536)
T PRK10946 318 RRIPAELGCQLQQVFGMAEGLVNYTRL-DD---------SDERIFTTQGRPMSPDD-EVWVADAD-GNPLPQG--EVGRL 383 (536)
T ss_pred HHHHHhcCCeEEEeecccccceeeecC-CC---------ccccccccCCcccCCCc-eEEEECCC-CCCCCCC--CccEE
Confidence 99874 599999999999965332211 11 1112346889998 666 69999975 8888887 89999
Q ss_pred EEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEE
Q 008342 406 VMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484 (569)
Q Consensus 406 ~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 484 (569)
+++|+.++.||+++++.+...| .++||+|||+|+++++|.+++.||.+|+++++|.+++|.+||+.|.++|+|.+++|+
T Consensus 384 ~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~ 463 (536)
T PRK10946 384 MTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALV 463 (536)
T ss_pred EEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEE
Confidence 9999999999999999998888 479999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhc-CCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 485 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 485 ~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
+.+++..|+.+++++++.++. ...++.+++++. +++|++|..+.+.+ +|+|++||++|++|++++.+..
T Consensus 464 ~~~~~~~g~~~~a~vv~~~~~-------~~~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~~ 534 (536)
T PRK10946 464 SMEDELMGEKSCAFLVVKEPL-------KAVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 534 (536)
T ss_pred cCCCcccCceEEEEEEeCCCC-------CHHHHHHHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhhc
Confidence 999988888899999877642 346889999876 99999999998776 9999999999999999987654
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=533.75 Aligned_cols=488 Identities=24% Similarity=0.309 Sum_probs=393.7
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSI-GLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
.|+.++|.+++ +|+++|+++.+..+||.||.++++++|..|.+.|+ ++||+|+++++|+++++++++||+++|++++
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v 80 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLV 80 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEE
Confidence 57888898876 79999999999999999999999999999999999 7999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
|++|.++.+++.++++.++++++|++++....+.... . ....++.+++ ..+.++
T Consensus 81 ~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~--------~~~~~i~~~~----------------~~~~~~ 134 (540)
T PRK13388 81 GLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--L--------PGVRVLDVDT----------------PAYAEL 134 (540)
T ss_pred EecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--c--------cCceEEEccc----------------hhhhhh
Confidence 9999999999999999999999999877654433210 1 1123333322 123333
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHH-
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSL- 257 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~- 257 (569)
+.......+ .....++++++++|||||||.||+|.++|.++..........+++.++|+++..+|++|.+++...+..
T Consensus 135 ~~~~~~~~~-~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~ 213 (540)
T PRK13388 135 VAAAGALTP-HREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPA 213 (540)
T ss_pred hccccCcCC-CCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHH
Confidence 322111111 122467899999999999999999999999998888877888899999999999999999988766654
Q ss_pred HHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhh-hcCCe
Q 008342 258 AALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFR 336 (569)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~~~~ 336 (569)
+..|+++++.+.+++..+++.++++++|++..+|..+..++......... ..+++. ++ |+++++....++. .++++
T Consensus 214 l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~-~~~l~~-~~-G~~~~~~~~~~~~~~~~~~ 290 (540)
T PRK13388 214 VASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDA-DNPLRV-AF-GNEASPRDIAEFSRRFGCQ 290 (540)
T ss_pred HHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCcccc-ccceEE-EE-CCCCCHHHHHHHHHHhCCc
Confidence 44566665566788999999999999999999999999988765432222 345553 33 6667777777776 45999
Q ss_pred EecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCC------------CcccCCCCCceEE
Q 008342 337 ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDART------------NQPVPADGKTIGE 404 (569)
Q Consensus 337 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~------------~~~~~~~~~~~Ge 404 (569)
+++.||+||++.++.... . ...+++|.|.+++ +++++++ |+.+..+ +..||
T Consensus 291 l~~~YG~tE~~~~~~~~~---~----------~~~~~vG~p~~g~---~i~~~~~~~~~~~~~~d~~g~~~~~~-~~~GE 353 (540)
T PRK13388 291 VEDGYGSSEGAVIVVREP---G----------TPPGSIGRGAPGV---AIYNPETLTECAVARFDAHGALLNAD-EAIGE 353 (540)
T ss_pred eecccccccccceeecCC---C----------CCCCCCCCCCCCc---EEEcCCCCccccceeccCccccccCC-CcceE
Confidence 999999999986554321 0 1126788888764 3333332 4443222 26899
Q ss_pred EEEe-cCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEE
Q 008342 405 IVMR-GSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483 (569)
Q Consensus 405 l~v~-~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 483 (569)
|+++ |+.++.||++++..+.+.|.+|||+|||+|+++++|.+++.||.+|+|+++|.+|+|.+||.+|.++|.|.+|+|
T Consensus 354 l~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v 433 (540)
T PRK13388 354 LVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAV 433 (540)
T ss_pred EEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEE
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHh--cCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 484 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA--KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~--~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
++.+++..|+.+++++++.++... ..+++.++++. .|+.+++|..+++++ ||+|++||++|++|++...+..
T Consensus 434 ~g~~~~~~g~~~~~~v~~~~~~~~-----~~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~~ 508 (540)
T PRK13388 434 YAVPDERVGDQVMAALVLRDGATF-----DPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWATG 508 (540)
T ss_pred EEccCCCCCceeEEEEEECCCCcC-----CHHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccCCC
Confidence 999998888888888888766443 34678888875 499999999998776 9999999999999999876553
Q ss_pred C
Q 008342 561 P 561 (569)
Q Consensus 561 ~ 561 (569)
.
T Consensus 509 ~ 509 (540)
T PRK13388 509 D 509 (540)
T ss_pred C
Confidence 3
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=537.38 Aligned_cols=508 Identities=25% Similarity=0.335 Sum_probs=407.1
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKL-SIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
++++.++|++++..+|+++|+.+.++++||.||.++++++|++|.+. |+++||+|+++++|++++++++|||+++|+++
T Consensus 23 ~~~~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~ 102 (562)
T PRK12492 23 YKSVVEVFERSCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIV 102 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 46899999999999999999999899999999999999999999984 99999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCC-cch--------------h
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDES-CDS--------------K 162 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~--------------~ 162 (569)
+++++.++.+++.+++++++++++++++...+......... ....++...... ... .
T Consensus 103 v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (562)
T PRK12492 103 VNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT--------GIEYLIEAKMGDLLPAAKGWLVNTVVDKVKK 174 (562)
T ss_pred eccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc--------CceEEEeechhhccccccchhcccccccccc
Confidence 99999999999999999999999999876544443322110 011111110000 000 0
Q ss_pred hhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhC---------C
Q 008342 163 QLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG---------M 233 (569)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~---------~ 233 (569)
..+.........|++++...............+++++|+|||||||.||+|.++|+++..........+. +
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 254 (562)
T PRK12492 175 MVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLM 254 (562)
T ss_pred cccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccc
Confidence 0000001122345555433322211122345678999999999999999999999998777665544432 2
Q ss_pred CC-CcEEEEcCCccchhhHHHHHHHHH-hcceEEEe-ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcc
Q 008342 234 NE-GAVFLWTLPMFHGNGWSYTWSLAA-LCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 310 (569)
Q Consensus 234 ~~-~d~~~~~~p~~~~~g~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~ 310 (569)
.. +++++..+|++|.+++...+...+ .|+..++. ..+++..+++.++++++|++.++|+++..+.......... ++
T Consensus 255 ~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~ 333 (562)
T PRK12492 255 KEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLD-FS 333 (562)
T ss_pred cCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCccccc-cc
Confidence 23 357788999999999865555444 45545544 3468899999999999999999999999998876544444 78
Q ss_pred cceeeeecCCCCCHHHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeC
Q 008342 311 NVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDA 389 (569)
Q Consensus 311 ~l~~~~~~g~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~ 389 (569)
++|.+++||+++++.+.+++.+ .++++++.||+||++++++.+.... ....+++|.|++++ .++|+|+
T Consensus 334 ~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~p~~~~-~v~ivd~ 402 (562)
T PRK12492 334 ALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGE----------LARLGTVGIPVPGT-ALKVIDD 402 (562)
T ss_pred ceeEEEeccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcc----------cccCCccceecCCC-EEEEECC
Confidence 9999999999999999999885 4999999999999987665443211 11236789999999 6999998
Q ss_pred CCCcccCCCCCceEEEEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHH
Q 008342 390 RTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEV 468 (569)
Q Consensus 390 ~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~i 468 (569)
+ +++++.| +.|||+++|+.++.||+++++.+...| .+|||+|||+|+++++|.+++.||.||+|+++|.+++|.+|
T Consensus 403 ~-~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eI 479 (562)
T PRK12492 403 D-GNELPLG--ERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEI 479 (562)
T ss_pred C-CCCCCCC--CceEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHH
Confidence 5 8888877 789999999999999999999998888 47999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcc
Q 008342 469 EKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKI 547 (569)
Q Consensus 469 E~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi 547 (569)
|..|.++|.|.+++|++.++...++.+.++++...... ..+++.++++++++.|++|..+.+++ ||+|++||+
T Consensus 480 E~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~------~~~~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~ 553 (562)
T PRK12492 480 EDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGL------SVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKI 553 (562)
T ss_pred HHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCC------CHHHHHHHHHHhcccccCCcEEEEeccCCCCCCCce
Confidence 99999999999999999998888888988887654321 35789999999999999999999777 999999999
Q ss_pred cHHHHHHH
Q 008342 548 QKHLLRAK 555 (569)
Q Consensus 548 ~r~~l~~~ 555 (569)
+|++|+++
T Consensus 554 ~r~~L~~~ 561 (562)
T PRK12492 554 LRRELRDI 561 (562)
T ss_pred eHHHHHhh
Confidence 99999865
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=534.87 Aligned_cols=521 Identities=23% Similarity=0.255 Sum_probs=415.5
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
....+++.++|++++..+|+++|++..++++||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 6 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~ 85 (540)
T PRK06164 6 APRADTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGA 85 (540)
T ss_pred ccCCCCHHHHHHHHHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCc
Confidence 44566999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchH-HHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhh
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFS-LAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIE 174 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (569)
+++|+++..+.+++.++++.++++++|++++... .+......... ........++.+++...... ......
T Consensus 86 ~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~ 157 (540)
T PRK06164 86 TVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPP--DALPPLRAIAVVDDAADATP------APAPGA 157 (540)
T ss_pred EEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccc--cccCCcceEEEeccCcccCC------CCCccc
Confidence 9999999999999999999999999999876421 11111111100 00012334444442110000 000001
Q ss_pred HHhhhhcCCCCCC---CCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhH
Q 008342 175 YEKFLETGDPEFA---WKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 251 (569)
Q Consensus 175 ~~~~l~~~~~~~~---~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 251 (569)
+.++......... .......+++++++|||||||.||+|.++|.++..........+++..++++++.+|++|.+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~ 237 (540)
T PRK06164 158 RVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGF 237 (540)
T ss_pred ccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHH
Confidence 1111111111000 0112346789999999999999999999999999988888888899999999999999999999
Q ss_pred HHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecC-CCCCHHHHHHh
Q 008342 252 SYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAG-APPPPSLLFAM 330 (569)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g-~~l~~~~~~~~ 330 (569)
...+.++..|+++++.+.+++..+++.|+++++|++.++|+++..+.+... .... +++++.+..+| .+...++.+++
T Consensus 238 ~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~-~~~~-~~~l~~~~~~~~~~~~~~~~~~~ 315 (540)
T PRK06164 238 STLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG-ERAD-FPSARLFGFASFAPALGELAALA 315 (540)
T ss_pred HHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc-ccCC-CcceeeeeeccCCcchHHHHHHH
Confidence 877777777878777788899999999999999999999999999988722 2223 78888876665 55566677777
Q ss_pred hhcCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCcee-eccCCceeeeCCCCcccCCCCCceEEEEEec
Q 008342 331 SQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT-ICLDGLDVIDARTNQPVPADGKTIGEIVMRG 409 (569)
Q Consensus 331 ~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~ 409 (569)
...++++++.||+||++++++.+..... ......+.|.+. +++ .++|+|++++++++.| +.|||+++|
T Consensus 316 ~~~~~~~~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~-~~~i~d~~~~~~~~~g--~~Gel~v~g 384 (540)
T PRK06164 316 RARGVPLTGLYGSSEVQALVALQPATDP--------VSVRIEGGGRPASPEA-RVRARDPQDGALLPDG--ESGEIEIRA 384 (540)
T ss_pred hhcCCceecceeeccccceeeccCCCCC--------CcceeccCccccCCCe-EEEEecCCCCcCCCCC--CeeEEEEec
Confidence 6669999999999999876554432111 111124557765 677 5999998889999887 799999999
Q ss_pred CcccccccCCcchhhhhhc-CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecC
Q 008342 410 SCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488 (569)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 488 (569)
++++.||+++++.+...|. +|||+|||+|+++++|.+++.||.+|+|+++|.+++|.+||+.|.+++.|.+++|++.+.
T Consensus 385 ~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~ 464 (540)
T PRK06164 385 PSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR 464 (540)
T ss_pred ccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC
Confidence 9999999999999988884 789999999999999999999999999999999999999999999999999999999874
Q ss_pred CCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCC---cccHHHHHHHHHhcCCcc
Q 008342 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATG---KIQKHLLRAKAKEMGPVK 563 (569)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~G---Ki~r~~l~~~~~~~~~~~ 563 (569)
..++.++++++..++... ..+++.++|+++++.+++|..+.+.+ +|+|++| |++|+.|++++++..-.+
T Consensus 465 -~~~~~~~~~vv~~~~~~~-----~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~~~~ 537 (540)
T PRK06164 465 -DGKTVPVAFVIPTDGASP-----DEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARLAAE 537 (540)
T ss_pred -CCceeEEEEEEeCCCCCC-----CHHHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhhhhh
Confidence 345678888887765433 56789999999999999999998777 9999999 999999999988765444
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-65 Score=545.91 Aligned_cols=504 Identities=22% Similarity=0.274 Sum_probs=395.4
Q ss_pred cccCHHHHHHHhhhhCCCceeeeeCC---------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHH
Q 008342 18 TALTPLWFINRAATLHPTRKSVVYGS---------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQF 88 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 88 (569)
..+|+.++++++++++|+++|+++.+ +.+||+||.++++++|++|.+. +++||+|+++++|++++++++|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~l 110 (612)
T PRK12476 32 PGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFF 110 (612)
T ss_pred ccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHH
Confidence 35799999999999999999998732 4899999999999999999986 9999999999999999999999
Q ss_pred HhhhcCceEeec-cccCC--HHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhH
Q 008342 89 GAPMAGAVLNSI-NIRLN--ATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE 165 (569)
Q Consensus 89 A~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (569)
||+++|++++|+ ++.++ .+++.+++++++++++|++++....+......+.. .....++.+++...
T Consensus 111 A~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~------ 179 (612)
T PRK12476 111 AAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPR-----LRRPRVIAIDAIPD------ 179 (612)
T ss_pred HHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhccc-----ccCceEEEeccccc------
Confidence 999999999999 57766 78999999999999999988766554433222210 01233444432110
Q ss_pred HhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhC-CCCCcEEEEcCC
Q 008342 166 YALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG-MNEGAVFLWTLP 244 (569)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~-~~~~d~~~~~~p 244 (569)
...... ......++++++|+|||||||.||+|.++|+++..........++ +.+++++++.+|
T Consensus 180 ---------------~~~~~~-~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~P 243 (612)
T PRK12476 180 ---------------SAGESF-VPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLP 243 (612)
T ss_pred ---------------cccccc-cCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCC
Confidence 000000 011235689999999999999999999999999877776666677 788999999999
Q ss_pred ccchhhHHHHHHHHHhcceEEEecc--C--ChHHHHHHHH--hcCccEEeehHHHHHHHHccCC----CCCCCCccccee
Q 008342 245 MFHGNGWSYTWSLAALCGTSICLRQ--V--TAKAVYTAIA--THGVTHFCAAPVVLNAIANASP----EDTILPLTNVVN 314 (569)
Q Consensus 245 ~~~~~g~~~~~~~~~~g~~~~~~~~--~--~~~~~~~~i~--~~~~t~l~~~P~~~~~l~~~~~----~~~~~~l~~l~~ 314 (569)
++|.+|+...+..++.||+++++.+ + ++..+++.++ +++++++.++|.++..+..... ..... ++++|
T Consensus 244 l~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~-l~~lr- 321 (612)
T PRK12476 244 LYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDID-LSNVV- 321 (612)
T ss_pred cccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcc-hhHhe-
Confidence 9999999887777788888887743 3 7899999995 5899999999998887776421 11223 78899
Q ss_pred eeecCCCCCHHHHHHhhhc----CC---eEecccccccCCCCccccccCCCCC----------------CCCchhhhhcc
Q 008342 315 VNTAGAPPPPSLLFAMSQK----GF---RITHTYGLTELTGPASVCAWKPEWD----------------SLPFETQARLN 371 (569)
Q Consensus 315 ~~~~g~~l~~~~~~~~~~~----~~---~i~~~YG~tE~~~~~~~~~~~~~~~----------------~~~~~~~~~~~ 371 (569)
+++||+++++++.+++.+. |+ ++++.||+||+++.++......... ..+........
T Consensus 322 ~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 401 (612)
T PRK12476 322 LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAH 401 (612)
T ss_pred EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCccee
Confidence 9999999999999888753 43 4999999999876543322110000 00000011123
Q ss_pred ccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhc-------------------CCee
Q 008342 372 ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-------------------NGWF 432 (569)
Q Consensus 372 ~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------------------~g~~ 432 (569)
.++|.|++++ ++.|+|++++++++.| +.|||+++|++++.|||++++.+.+.|. ++||
T Consensus 402 ~~~G~~~~g~-~v~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~ 478 (612)
T PRK12476 402 VSCGQVARSQ-WAVIVDPDTGAELPDG--EVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWL 478 (612)
T ss_pred EeCCCcCCCC-EEEEEeCCCCcCCCCC--CEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCee
Confidence 5789999999 6999998879999988 8999999999999999999999988884 2599
Q ss_pred ecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhc-CCCcee--eEEEeecCCCCCceeeEEEEecCCcchhh
Q 008342 433 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL-HPLVLE--AAVVARPDERWGESPCAFVTLKPEADELD 509 (569)
Q Consensus 433 ~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~--~~v~~~~~~~~g~~~~~~v~~~~~~~~~~ 509 (569)
+|||+|+++ ||+++|+||.||+|+++|++|+|.+||++|.+ ||.|.+ ++|++.+++. ++.+++++++.++....
T Consensus 479 ~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~- 555 (612)
T PRK12476 479 RTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRA- 555 (612)
T ss_pred eccccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcccc-
Confidence 999999985 99999999999999999999999999999985 799999 6777887776 78899998887653321
Q ss_pred hhhHHHHHHHHHHhcCC-CCcC-CceEEecc---CCCCCCCcccHHHHHHHHHhcC
Q 008342 510 KGKLAEDVSKFCRAKMP-SYWV-PKSVVFAA---LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 510 ~~~~~~~l~~~~~~~l~-~~~~-p~~i~~~~---lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
..++|.+++++.+. .+++ |..+.|++ ||+|++||++|++|++++.+..
T Consensus 556 ---~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~~~ 608 (612)
T PRK12476 556 ---DPAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLDGR 608 (612)
T ss_pred ---cHHHHHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHcCC
Confidence 33556667777665 3666 56676653 9999999999999999987654
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-65 Score=530.00 Aligned_cols=477 Identities=26% Similarity=0.393 Sum_probs=396.9
Q ss_pred HHhhhhCCCceeeee--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccC
Q 008342 27 NRAATLHPTRKSVVY--GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRL 104 (569)
Q Consensus 27 ~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~ 104 (569)
+.++..+|+++|+.+ .++.+||.||.+.+.++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|+++.+
T Consensus 2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~ 81 (488)
T PRK09088 2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81 (488)
T ss_pred chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence 457788999999987 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhhcCCC
Q 008342 105 NATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP 184 (569)
Q Consensus 105 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 184 (569)
+.+++.+++++++++++|+++...... ... ..++++......
T Consensus 82 ~~~~~~~~~~~~~~~~ii~~~~~~~~~-----------------~~~---------------------~~~~~~~~~~~~ 123 (488)
T PRK09088 82 SASELDALLQDAEPRLLLGDDAVAAGR-----------------TDV---------------------EDLAAFIASADA 123 (488)
T ss_pred CHHHHHHHHHhCCCCEEEEcchhhccc-----------------ccc---------------------cchhhhhhhccc
Confidence 999999999999999999986532100 000 011111111000
Q ss_pred -CCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHHh-cc
Q 008342 185 -EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAAL-CG 262 (569)
Q Consensus 185 -~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~-g~ 262 (569)
..........+++++++|||||||.||+|.++|++++..+........+..+|++++.+|++|.+|+...+...+. |+
T Consensus 124 ~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~ 203 (488)
T PRK09088 124 LEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGG 203 (488)
T ss_pred cccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCC
Confidence 0011122356789999999999999999999999998877777767778899999999999999998776666555 55
Q ss_pred eEEEeccCChHHHHHHHH--hcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCCeEecc
Q 008342 263 TSICLRQVTAKAVYTAIA--THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHT 340 (569)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~--~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~ 340 (569)
++++...+.+..++..+. ++++|++.++|.+++.+.+........ +++++.+++||++++.+..+.+.+.++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~~ 282 (488)
T PRK09088 204 SILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAA-LRHLTALFTGGAPHAAEDILGWLDDGIPMVDG 282 (488)
T ss_pred EEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccc-cccceEEEecCCCCCHHHHHHHHHhCCceeee
Confidence 555556788888888886 489999999999999998765433333 78999999999999999888887779999999
Q ss_pred cccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCc
Q 008342 341 YGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNP 420 (569)
Q Consensus 341 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~ 420 (569)
||+||++++....... .......+++|.|.+++ +++|+|++ +++++.+ +.|||+++|++++.||++++
T Consensus 283 YG~TE~~~~~~~~~~~--------~~~~~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gY~~~~ 350 (488)
T PRK09088 283 FGMSEAGTVFGMSVDC--------DVIRAKAGAAGIPTPTV-QTRVVDDQ-GNDCPAG--VPGELLLRGPNLSPGYWRRP 350 (488)
T ss_pred ecccccccccccCCCc--------ccccccCCccccCCCCc-EEEEECCC-CCCCcCC--CceEEEEECCccchhhcCCh
Confidence 9999998654321110 01112336899999999 69999865 8888877 78999999999999999999
Q ss_pred chhhhhhc-CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEE
Q 008342 421 KANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFV 499 (569)
Q Consensus 421 ~~~~~~~~-~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v 499 (569)
+.+...|. +|||+|||+|+++++|.+++.||.+|+|+.+|.+++|.+||++|.++|.|.+++|++.+++..|+..++++
T Consensus 351 ~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v 430 (488)
T PRK09088 351 QATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAI 430 (488)
T ss_pred hhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEE
Confidence 88887774 89999999999999999999999999999999999999999999999999999999999887788888888
Q ss_pred EecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 500 TLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 500 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
++.++... ..+++.++++++++.|++|..+.+++ ||+|++||++|++|++++.+.
T Consensus 431 ~~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~~ 486 (488)
T PRK09088 431 VPADGAPL-----DLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAAG 486 (488)
T ss_pred EECCCCCC-----CHHHHHHHHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHhc
Confidence 87765432 45789999999999999999998777 999999999999999988764
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-65 Score=545.55 Aligned_cols=518 Identities=21% Similarity=0.275 Sum_probs=394.7
Q ss_pred cccCHHHHHHHhhhhCCCceeeeeC----C-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHH
Q 008342 18 TALTPLWFINRAATLHPTRKSVVYG----S-----KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQF 88 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 88 (569)
...|++++|++.++++|+++|+.+. + ..+||+|+.++++++|.+|.+.|+++||+|+|+++|+++|++++|
T Consensus 40 ~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~l 119 (660)
T PLN02430 40 DITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAME 119 (660)
T ss_pred CCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4568999999999999999998642 1 247999999999999999999999999999999999999999999
Q ss_pred HhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchH-HHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHh
Q 008342 89 GAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFS-LAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA 167 (569)
Q Consensus 89 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (569)
||+++|++++|+++.++.+++.+++++++++++|+++.... .+.......+ ....++.+++...........
T Consensus 120 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~l~~ii~~~~~~~~~~~~~~~ 192 (660)
T PLN02430 120 ACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAK-------RLKAIVSFTSVTEEESDKASQ 192 (660)
T ss_pred HHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCC-------CceEEEEECCCChHHhhhhhc
Confidence 99999999999999999999999999999999999875322 1111111111 345566665422111000000
Q ss_pred hhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH---h--CCCCCcEEEEc
Q 008342 168 LARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---W--GMNEGAVFLWT 242 (569)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~---~--~~~~~d~~~~~ 242 (569)
......+|++++...........+..++++++|+|||||||.||||++||+++.......... + +++++|++++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~ 272 (660)
T PLN02430 193 IGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSF 272 (660)
T ss_pred CCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEe
Confidence 111235677776544322222223467899999999999999999999999998876654322 1 46789999999
Q ss_pred CCccchhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCC-------------------
Q 008342 243 LPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE------------------- 303 (569)
Q Consensus 243 ~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~------------------- 303 (569)
+|++|.++.......+..|+++++.. .++..+++.+++++||++.++|.+++.+.+....
T Consensus 273 lPl~H~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 351 (660)
T PLN02430 273 LPLAHILDRMIEEYFFRKGASVGYYH-GDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKY 351 (660)
T ss_pred CcHHHHHHHHHHHHHHHcCCEEEEeC-CChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999877666666676666554 3778899999999999999999999887652100
Q ss_pred --------------CCC-----------CCcccceeeeecCCCCCHHHHHHhhhcC-CeEecccccccCCCCccccccCC
Q 008342 304 --------------DTI-----------LPLTNVVNVNTAGAPPPPSLLFAMSQKG-FRITHTYGLTELTGPASVCAWKP 357 (569)
Q Consensus 304 --------------~~~-----------~~l~~l~~~~~~g~~l~~~~~~~~~~~~-~~i~~~YG~tE~~~~~~~~~~~~ 357 (569)
... ...+++|.+++||+++++++.+.++..+ +.+++.||+||+++.++.....
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~- 430 (660)
T PLN02430 352 KLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPD- 430 (660)
T ss_pred HHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccc-
Confidence 000 0015799999999999999977776664 6899999999998766543211
Q ss_pred CCCCCCchhhhhccccCCceeeccCCceeeeCC-CC-cccCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeecC
Q 008342 358 EWDSLPFETQARLNARQGVRTICLDGLDVIDAR-TN-QPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSG 435 (569)
Q Consensus 358 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~-~~-~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tG 435 (569)
.....+++|.|.+++ ++++.|.+ .+ .+.+.+ ..|||+++|++++.|||++++.+.+.|.+|||+||
T Consensus 431 ---------~~~~~gsvG~p~~~~-evki~d~~~~g~~~~~~~--~~GEi~vrg~~v~~GY~~~~e~t~~~~~dGw~~TG 498 (660)
T PLN02430 431 ---------EMCMLGTVGAPAVYN-ELRLEEVPEMGYDPLGEP--PRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTG 498 (660)
T ss_pred ---------cCCCCCCccCCCCce-EEEEEEcCCcCcccCCCC--CcceEEecCCCccccccCChHHhhhhhhccceecc
Confidence 112247899999999 69998732 22 333333 57999999999999999999999999999999999
Q ss_pred ceeEEcCCCeEEEecccCceEE-eCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcch-------
Q 008342 436 DLAVKHPDNYIEIKDRLKDVII-SGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE------- 507 (569)
Q Consensus 436 D~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~------- 507 (569)
|+|++++||++++.||.+|+|+ .+|++|+|.+||.+|.+||.|.+++|++.. .++.++|+|++.++.-.
T Consensus 499 Dig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~~~~~~~~~ 575 (660)
T PLN02430 499 DIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTNKWAKDNG 575 (660)
T ss_pred ceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHHHHHHHhCC
Confidence 9999999999999999999999 579999999999999999999999999843 24568888887653210
Q ss_pred --------hhhhhHHHHHHHHH-----HhcCCCCcCCceEEecc--C-----CCCCCCcccHHHHHHHHHhc
Q 008342 508 --------LDKGKLAEDVSKFC-----RAKMPSYWVPKSVVFAA--L-----PKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 508 --------~~~~~~~~~l~~~~-----~~~l~~~~~p~~i~~~~--l-----P~t~~GKi~r~~l~~~~~~~ 559 (569)
.+.....+.+.+.+ ++.|+.|.+++.+.+.+ + .+|+++|++|+.+.+.|++.
T Consensus 576 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~ 647 (660)
T PLN02430 576 FTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVE 647 (660)
T ss_pred CCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHH
Confidence 00011222333322 23599999999998765 3 38999999999999988864
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-65 Score=594.40 Aligned_cols=517 Identities=22% Similarity=0.244 Sum_probs=405.1
Q ss_pred ccCHHHHHHHhhhhCCCceeeee---------CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHH
Q 008342 19 ALTPLWFINRAATLHPTRKSVVY---------GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFG 89 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~---------~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA 89 (569)
..++.++|+++++.+|+++|+++ .++++||+||.++++++|++|.+.|+++|++|+++++|++++++++||
T Consensus 235 ~~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA 314 (1389)
T TIGR03443 235 RGAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMG 314 (1389)
T ss_pred cCcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHH
Confidence 35799999999999999999986 347899999999999999999999999999999999999999999999
Q ss_pred hhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccch---HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHH
Q 008342 90 APMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF---SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEY 166 (569)
Q Consensus 90 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (569)
|+++|++++|++|.++.+++.++++.++++++|++.... ..+........ ........+ .+.+....
T Consensus 315 ~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~------ 384 (1389)
T TIGR03443 315 VLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKEL---ELRTEIPAL-ALQDDGSL------ 384 (1389)
T ss_pred HHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhccc---ccccccceE-Eecccccc------
Confidence 999999999999999999999999999999999876421 11111110000 000001111 11111000
Q ss_pred hhhcchhh--HHhhhhcCC--CCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEc
Q 008342 167 ALARGAIE--YEKFLETGD--PEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWT 242 (569)
Q Consensus 167 ~~~~~~~~--~~~~l~~~~--~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~ 242 (569)
..+... ..+.+.... ..........++++++|+|||||||.||||+++|+++.....+....+++.++|+++..
T Consensus 385 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~ 462 (1389)
T TIGR03443 385 --VGGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTML 462 (1389)
T ss_pred --cccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 000000 001110000 00111122457899999999999999999999999999988888888899999999999
Q ss_pred CCccchhhHHHHHHHHHhcceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecC
Q 008342 243 LPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAG 319 (569)
Q Consensus 243 ~p~~~~~g~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g 319 (569)
.|++|..++...+.+++.|+++++.+. .++..+++.|+++++|++.++|++++.|..... .. ++++|.+++||
T Consensus 463 ~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~~-~~~lr~~~~gG 538 (1389)
T TIGR03443 463 SGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT---TP-IPSLHHAFFVG 538 (1389)
T ss_pred cCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc---cc-CCCccEEEEec
Confidence 999999988888888888888877653 367899999999999999999999999875432 12 78999999999
Q ss_pred CCCCHHHHHHhhhc--CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCC-CcccC
Q 008342 320 APPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDART-NQPVP 396 (569)
Q Consensus 320 ~~l~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~-~~~~~ 396 (569)
+++++...+++.+. ++++++.||+||++..++.....................++|.|++++ ++.|+|++. +++++
T Consensus 539 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~~ 617 (1389)
T TIGR03443 539 DILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNV-QLLVVNRNDRTQTCG 617 (1389)
T ss_pred ccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCC-EEEEECCccCCCcCC
Confidence 99999999888754 789999999999987655433211100000000011235689999999 699999753 56788
Q ss_pred CCCCceEEEEEecCcccccccCCcchhhhhhc-----------------------------CCeeecCceeEEcCCCeEE
Q 008342 397 ADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-----------------------------NGWFHSGDLAVKHPDNYIE 447 (569)
Q Consensus 397 ~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------------------------~g~~~tGD~~~~~~~g~l~ 447 (569)
.| +.|||+|+|++++.||+++++.+.+.|. ++||+|||+|++++||.++
T Consensus 618 ~G--~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~ 695 (1389)
T TIGR03443 618 VG--EVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVE 695 (1389)
T ss_pred CC--CceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEE
Confidence 87 7999999999999999999999988872 4799999999999999999
Q ss_pred EecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhh------------------
Q 008342 448 IKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELD------------------ 509 (569)
Q Consensus 448 ~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~------------------ 509 (569)
|+||.||+||++|++|+|.+||.+|.+||.|.+++|++.++...++.+++++++........
T Consensus 696 ~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1389)
T TIGR03443 696 CCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKG 775 (1389)
T ss_pred EecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhh
Confidence 99999999999999999999999999999999999998888777788999988763211100
Q ss_pred ---hhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHH
Q 008342 510 ---KGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 554 (569)
Q Consensus 510 ---~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (569)
.....++++++++++||.|++|..+++.+ ||+|++||++|++|++
T Consensus 776 ~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~ 824 (1389)
T TIGR03443 776 LIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPF 824 (1389)
T ss_pred hhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCC
Confidence 01135789999999999999999998777 9999999999999964
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-64 Score=532.88 Aligned_cols=522 Identities=26% Similarity=0.317 Sum_probs=413.8
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
.....++.++|+++++.+|+++|+.+.++++||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus 29 ~~~~~~l~~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 108 (567)
T PRK06178 29 PHGERPLTEYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGA 108 (567)
T ss_pred CcCcccHHHHHHHHHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCe
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchh--hhHHh--hh--
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSK--QLEYA--LA-- 169 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~~-- 169 (569)
+++|++|..+..++.++++.++++++++++...+.+....... ....++.......... ..... ..
T Consensus 109 ~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 180 (567)
T PRK06178 109 VHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--------SLRHVIVTSLADVLPAEPTLPLPDSLRAP 180 (567)
T ss_pred EEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--------CcceEEEeccccccccccccccccccccc
Confidence 9999999999999999999999999999988766555443221 1223332221110000 00000 00
Q ss_pred -cchhhHHhhhhcCC--CCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHh-HhCCCCCcEEEEcCCc
Q 008342 170 -RGAIEYEKFLETGD--PEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL-IWGMNEGAVFLWTLPM 245 (569)
Q Consensus 170 -~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~-~~~~~~~d~~~~~~p~ 245 (569)
.....+.+++.... +..........+++++++|||||||.||+|.+||.+++........ .....++|+++..+|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 260 (567)
T PRK06178 181 RLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPE 260 (567)
T ss_pred cccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecch
Confidence 00011111211111 1111122345789999999999999999999999998876555443 3567889999999999
Q ss_pred cchhhHHH-HHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeee--cCCCC
Q 008342 246 FHGNGWSY-TWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT--AGAPP 322 (569)
Q Consensus 246 ~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~--~g~~l 322 (569)
+|.+|+.. .+..+..|+++++.+++++..+++.++++++|.+.++|..+..+.......... +.+++.+.. .++.+
T Consensus 261 ~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~-l~~l~~~~~~~~~~~~ 339 (567)
T PRK06178 261 FWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYD-LSSLRQVRVVSFVKKL 339 (567)
T ss_pred HHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCC-cchheeeeeccccccC
Confidence 99999854 445566777888878889999999999999999999999999888764333333 667777543 45899
Q ss_pred CHHHHHHhhhc-CCeEec-ccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCC
Q 008342 323 PPSLLFAMSQK-GFRITH-TYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGK 400 (569)
Q Consensus 323 ~~~~~~~~~~~-~~~i~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~ 400 (569)
++++.+.+++. +..++. .||+||+++.+.......... ........++|.|++++ +++++|++++.+++.+
T Consensus 340 ~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~----~~~~~~~~~vG~p~~g~-~v~v~d~~~~~~~~~g-- 412 (567)
T PRK06178 340 NPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDD----FDLLSQPVFVGLPVPGT-EFKICDFETGELLPLG-- 412 (567)
T ss_pred CHHHHHHHHHHhCCcccccccccccccccceeccccccCc----cccccCCcccccccCCc-EEEEEcCCCCCcCCCC--
Confidence 99999998854 766665 799999986544332111000 00112346789999999 6999997789999987
Q ss_pred ceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCcee
Q 008342 401 TIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 480 (569)
Q Consensus 401 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~ 480 (569)
+.|||+++|++++.||+++++.+...|.+|||+|||+++++++|++++.||.+|+|+.+|.+++|.+||+++.+++.|.+
T Consensus 413 ~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~ 492 (567)
T PRK06178 413 AEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLG 492 (567)
T ss_pred CceEEEEECCcccccccCChhhhhhcccCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeE
Confidence 78999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 481 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 481 ~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
+++++.+++..|+.+++++++.++... ..+++.++++++++.+++|. +.+++ ||+|++||++|++|++++.+.
T Consensus 493 ~~v~~~~~~~~g~~~~~~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~~ 566 (567)
T PRK06178 493 SAVVGRPDPDKGQVPVAFVQLKPGADL-----TAAALQAWCRENMAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEEL 566 (567)
T ss_pred EEEEcCcCcccCcceEEEEEeCCCCcC-----CHHHHHHHHHhcCcccCCce-EEEeccCCCCCccceeHHHHHHHHHhh
Confidence 999999888888889999988765433 45789999999999999997 55555 999999999999999998765
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-64 Score=537.07 Aligned_cols=506 Identities=23% Similarity=0.288 Sum_probs=395.8
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
...+.|+.++|.++++++|+++|+++.++.+||+||.+++.++|.+|.+.|+++|++|+++++|++++++++|||+++|+
T Consensus 33 ~~~~~tl~~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~ 112 (600)
T PRK08279 33 PDSKRSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGA 112 (600)
T ss_pred CCCcccHHHHHHHHHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhH
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEY 175 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (569)
+++++++.++.+++.++++.++++++|++++....+........ ....++..++.... ....+..+
T Consensus 113 ~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-------~~~~~~~~ 178 (600)
T PRK08279 113 VVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLA-------RPPRLWVAGGDTLD-------DPEGYEDL 178 (600)
T ss_pred EEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhc-------ccceEEEecCcccc-------ccccHHHH
Confidence 99999999999999999999999999999887666655433332 11222222221100 01111222
Q ss_pred HhhhhcCCCC-CCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHH
Q 008342 176 EKFLETGDPE-FAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT 254 (569)
Q Consensus 176 ~~~l~~~~~~-~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 254 (569)
.++....... .........+++++|+|||||||.||+|.+||+++..........+++.++|++++.+|++|.+|+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~ 258 (600)
T PRK08279 179 AAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVA 258 (600)
T ss_pred hhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHH
Confidence 2222211111 111223467899999999999999999999999999998888888899999999999999999999877
Q ss_pred HHHHHhcceEEEe-ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-
Q 008342 255 WSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ- 332 (569)
Q Consensus 255 ~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~- 332 (569)
+..++.+|+.+++ +.+++..+++.++++++|++.++|++++.+.......... ..+++. ++|+.+++++.+++.+
T Consensus 259 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~-~~~l~~--~~g~~l~~~~~~~~~~~ 335 (600)
T PRK08279 259 WSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDR-DHRLRL--MIGNGLRPDIWDEFQQR 335 (600)
T ss_pred HHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcccc-CcceeE--EecCCCCHHHHHHHHHH
Confidence 7776665555555 6789999999999999999999999999998765443333 456665 3477899999999885
Q ss_pred cCC-eEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceee----ccC--------CceeeeCCCCc--ccCC
Q 008342 333 KGF-RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTI----CLD--------GLDVIDARTNQ--PVPA 397 (569)
Q Consensus 333 ~~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~----~~~--------~~~i~d~~~~~--~~~~ 397 (569)
++. ++++.||+||++....... ....++|.+.+ ... +..+.+.+ +. .++.
T Consensus 336 ~~~~~l~~~YG~tE~~~~~~~~~--------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~ 400 (600)
T PRK08279 336 FGIPRILEFYAASEGNVGFINVF--------------NFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDAD-GRCIKVKP 400 (600)
T ss_pred hCcceeeeeecccccceeecccC--------------CCCcccccccccccccceeeeeccCcCceeeCCC-CccccCCC
Confidence 454 6999999999875332211 01133443333 110 12233332 32 3444
Q ss_pred CCCceEEEE--EecCcccccccCCcchhhhhh-------cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHH
Q 008342 398 DGKTIGEIV--MRGSCVMKGYLKNPKANEEAF-------ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEV 468 (569)
Q Consensus 398 ~~~~~Gel~--v~~~~~~~gy~~~~~~~~~~~-------~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~i 468 (569)
+ +.||++ +.++.++.|| +++..+...| .++||+|||+|++++||.+++.||.||+|+++|.+|+|.+|
T Consensus 401 g--~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eI 477 (600)
T PRK08279 401 G--EVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEV 477 (600)
T ss_pred C--CceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHH
Confidence 4 789998 6789999999 8887777665 25799999999999999999999999999999999999999
Q ss_pred HHHHhcCCCceeeEEEeecCCCC-CceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCc
Q 008342 469 EKVLYLHPLVLEAAVVARPDERW-GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGK 546 (569)
Q Consensus 469 E~~l~~~~~v~~~~v~~~~~~~~-g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GK 546 (569)
|++|.++|+|.+|+|++.+.+.. +...+++++..++... ..+++.++|+++|+.|++|..+++++ ||+|++||
T Consensus 478 E~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~-----~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GK 552 (600)
T PRK08279 478 ENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEF-----DLAALAAHLYERLPAYAVPLFVRLVPELETTGTFK 552 (600)
T ss_pred HHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccC-----CHHHHHHHHHhhCccccCCeEEEeecCCCCCcchh
Confidence 99999999999999999876653 4445666666543322 45789999999999999999999877 99999999
Q ss_pred ccHHHHHHHHHhcCC
Q 008342 547 IQKHLLRAKAKEMGP 561 (569)
Q Consensus 547 i~r~~l~~~~~~~~~ 561 (569)
++|++|++++.+...
T Consensus 553 i~r~~L~~~~~~~~~ 567 (600)
T PRK08279 553 YRKVDLRKEGFDPSK 567 (600)
T ss_pred hhHHHHhhcCCCccc
Confidence 999999988777643
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-64 Score=531.64 Aligned_cols=514 Identities=26% Similarity=0.395 Sum_probs=411.7
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
.+++.+++++++..+|+++|+++.++++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 23 ~~~~~~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 102 (563)
T PRK06710 23 IQPLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVV 102 (563)
T ss_pred cccHHHHHHHHHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEe
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCc---chhh------------
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESC---DSKQ------------ 163 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~------------ 163 (569)
|++|.++.+++.++++.++++++++++............. ....++....... ....
T Consensus 103 pi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (563)
T PRK06710 103 QTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSAT--------KIEHVIVTRIADFLPFPKNLLYPFVQKKQSNL 174 (563)
T ss_pred ccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhh--------ccceeEEeccccccccccccccchhhcccccc
Confidence 9999999999999999999999999886554433221111 1122221110000 0000
Q ss_pred -hHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHh-HhCCC-CCcEEE
Q 008342 164 -LEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL-IWGMN-EGAVFL 240 (569)
Q Consensus 164 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~-~~~~~-~~d~~~ 240 (569)
...........|..+........ .......+++++++|||||||.||+|.++|++++........ .++.. .+++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l 253 (563)
T PRK06710 175 VVKVSESETIHLWNSVEKEVNTGV-EVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVL 253 (563)
T ss_pred cccccccchhhhhhhhhhcccccc-ccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEE
Confidence 00000000011222211111110 011123578999999999999999999999998765433333 23333 456888
Q ss_pred EcCCccchhhHHHHH-HHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecC
Q 008342 241 WTLPMFHGNGWSYTW-SLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAG 319 (569)
Q Consensus 241 ~~~p~~~~~g~~~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g 319 (569)
+.+|++|.+|+...+ ..+..|+++++.+.+++..+++.|+++++|++.++|+++..+.......... ++++|.+++||
T Consensus 254 ~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~v~~gg 332 (563)
T PRK06710 254 GVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYD-ISSIRACISGS 332 (563)
T ss_pred EeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCC-hhhhhheeeCC
Confidence 999999999886544 4455677777777889999999999999999999999999998765443333 78999999999
Q ss_pred CCCCHHHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCC
Q 008342 320 APPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPAD 398 (569)
Q Consensus 320 ~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~ 398 (569)
+++++++.+++.+ ++.++++.||+||+++.+..+... .....+++|.+.+++ .++++|++++.+++.|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~~~~~~~~~~~g 401 (563)
T PRK06710 333 APLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLW----------EKRVPGSIGVPWPDT-EAMIMSLETGEALPPG 401 (563)
T ss_pred CcCCHHHHHHHHHhhCCCEecccccccCccccccCccc----------ccccCCccCCCCCCC-eEEEEECCCCccCCCC
Confidence 9999999999885 489999999999998755432210 111235789999998 5999998889999888
Q ss_pred CCceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCc
Q 008342 399 GKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLV 478 (569)
Q Consensus 399 ~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v 478 (569)
+.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.+++.||.||+|+.+|.+|+|.+||++|.++|.|
T Consensus 402 --~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v 479 (563)
T PRK06710 402 --EIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKV 479 (563)
T ss_pred --CceEEEEecCccchhhhCChHHHhhhcccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcce
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHH
Q 008342 479 LEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK 557 (569)
Q Consensus 479 ~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~ 557 (569)
.+++|++.+++..|+.+.++++..++... +.+++.++++++++.+++|..+.+++ ||+|++||++|+.|++++.
T Consensus 480 ~~~~v~~~~~~~~g~~~~~~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~ 554 (563)
T PRK06710 480 QEVVTIGVPDPYRGETVKAFVVLKEGTEC-----SEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEK 554 (563)
T ss_pred eeEEEEccccCCcCceeEEEEEECCCCCC-----CHHHHHHHHHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHh
Confidence 99999999988888999999988776433 45789999999999999999998877 9999999999999999887
Q ss_pred hcC
Q 008342 558 EMG 560 (569)
Q Consensus 558 ~~~ 560 (569)
...
T Consensus 555 ~~~ 557 (563)
T PRK06710 555 RKN 557 (563)
T ss_pred hcC
Confidence 543
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-64 Score=525.84 Aligned_cols=478 Identities=25% Similarity=0.332 Sum_probs=398.0
Q ss_pred cccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 18 TALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
.+.++.+.|.+++..+|+++|+.+.++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~ 112 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV 112 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHh
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEK 177 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (569)
+|+++.++.+++.++++.+++++++++++....+... ...++.++... ....
T Consensus 113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-------------~~~~~~~~~~~--------------~~~~- 164 (516)
T PRK13383 113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGA-------------DDAVAVIDPAT--------------AGAE- 164 (516)
T ss_pred EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhh-------------hcceEEeccch--------------hhhh-
Confidence 9999999999999999999999999988755443221 01222222110 0000
Q ss_pred hhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHH--HHHhHhHhCCCCCcEEEEcCCccchhhHHHHH
Q 008342 178 FLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 255 (569)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~--~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (569)
.... .+...++.++++|||||||.||+|.++|...... .......+++.++|+++..+|++|.+|+...+
T Consensus 165 ----~~~~----~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~ 236 (516)
T PRK13383 165 ----ESGG----RPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLM 236 (516)
T ss_pred ----cCCC----CCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHH
Confidence 0000 1122346678999999999999999999743211 12233456788999999999999999998877
Q ss_pred HHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCC-CCCCcccceeeeecCCCCCHHHHHHhhh-c
Q 008342 256 SLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED-TILPLTNVVNVNTAGAPPPPSLLFAMSQ-K 333 (569)
Q Consensus 256 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~ 333 (569)
.++..|++++....+++..+++.++++++|.+.++|.++..+....... ....++++|.+++||+++++++.+++.+ +
T Consensus 237 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 316 (516)
T PRK13383 237 LTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY 316 (516)
T ss_pred HHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 7778888888777889999999999999999999999999998754321 1112789999999999999999999885 5
Q ss_pred CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccc
Q 008342 334 GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVM 413 (569)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 413 (569)
+.++++.||+||++..+..+.. .......++|.|.+++ +++|+|++ +++++.+ +.|||+++|++++
T Consensus 317 g~~v~~~YG~tE~~~~~~~~~~----------~~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~~ 382 (516)
T PRK13383 317 GDILYNGYGSTEVGIGALATPA----------DLRDAPETVGKPVAGC-PVRILDRN-NRPVGPR--VTGRIFVGGELAG 382 (516)
T ss_pred Cchhhhcccccccccceecccc----------ccccCCCcccCCCCCc-EEEEECCC-CCCCCCC--CceEEEEecCccc
Confidence 8999999999999865443321 1112346899999999 69999976 8888877 7899999999999
Q ss_pred ccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCc
Q 008342 414 KGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493 (569)
Q Consensus 414 ~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~ 493 (569)
.+|++.+. ..+.+|||+|||+++++++|++++.||.+|+|+++|.+|+|.+||++|.++|.|.++++++.+++..|+
T Consensus 383 ~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~ 459 (516)
T PRK13383 383 TRYTDGGG---KAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGH 459 (516)
T ss_pred ccccCCch---hheecCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCc
Confidence 99998653 345689999999999999999999999999999999999999999999999999999999999888889
Q ss_pred eeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHH
Q 008342 494 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLR 553 (569)
Q Consensus 494 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (569)
.+.++|++.+.... ..+++.++++++++.|++|..+.+++ ||+|++||++|++|+
T Consensus 460 ~~~~~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 460 RLAAFVVLHPGSGV-----DAAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred eEEEEEEECCCCCC-----CHHHHHHHHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence 99999998765433 45789999999999999999998777 999999999999874
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-65 Score=532.81 Aligned_cols=489 Identities=20% Similarity=0.202 Sum_probs=374.6
Q ss_pred cC-HHHHHHHhhhhCCCceeeeeCC----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcC
Q 008342 20 LT-PLWFINRAATLHPTRKSVVYGS----KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94 (569)
Q Consensus 20 ~~-l~~~l~~~a~~~p~~~a~~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 94 (569)
|+ +.+.|++++.++|+++|+++.+ +++||+||.++++++|++|.++ ++||+|+++++|++++++++|||+++|
T Consensus 1 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G 78 (525)
T PRK05851 1 MNELAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAG 78 (525)
T ss_pred CchHHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcC
Confidence 45 8899999999999999999987 8899999999999999999987 799999999999999999999999999
Q ss_pred ceEeecccc--------CCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHH
Q 008342 95 AVLNSINIR--------LNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEY 166 (569)
Q Consensus 95 ~~~v~l~~~--------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (569)
+++++ ++. ...+++.++++.++++++|++......+.... . . +.+.+.
T Consensus 79 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~--------~---~~~~~~--------- 134 (525)
T PRK05851 79 AAVSI-LPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVD---S--------S---VTVHDL--------- 134 (525)
T ss_pred CCCcC-CCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhh---c--------c---cccccc---------
Confidence 98653 332 22355667889999999999876544332211 0 0 001000
Q ss_pred hhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCC-CCcEEEEcCCc
Q 008342 167 ALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMN-EGAVFLWTLPM 245 (569)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~-~~d~~~~~~p~ 245 (569)
........ .... ....++++++|+|||||||.||+|.++|.++...+......+++. ++|++++.+|+
T Consensus 135 ---------~~~~~~~~-~~~~-~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 203 (525)
T PRK05851 135 ---------ATAAHTNR-SASL-TPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPL 203 (525)
T ss_pred ---------cccccccc-cccC-CCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCC
Confidence 00000000 0000 123568999999999999999999999999999888888888888 99999999999
Q ss_pred cchhhHHHHHHHHHhcceEEEecc--C--ChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCC
Q 008342 246 FHGNGWSYTWSLAALCGTSICLRQ--V--TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAP 321 (569)
Q Consensus 246 ~~~~g~~~~~~~~~~g~~~~~~~~--~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~ 321 (569)
+|.+|+...+.+++.|+++++.+. + ++..+++.++++++|++...|.++..+.+.........++++|.+++||++
T Consensus 204 ~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~ 283 (525)
T PRK05851 204 YHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEP 283 (525)
T ss_pred ccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEecccc
Confidence 999999877777788888877652 3 577899999999999886555555555433222111227899999999999
Q ss_pred CCHHHHHHhhh----cCC---eEecccccccCCCCccccccCCCCCC--C--CchhhhhccccCCceeeccCCceeeeCC
Q 008342 322 PPPSLLFAMSQ----KGF---RITHTYGLTELTGPASVCAWKPEWDS--L--PFETQARLNARQGVRTICLDGLDVIDAR 390 (569)
Q Consensus 322 l~~~~~~~~~~----~~~---~i~~~YG~tE~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~G~~~~~~~~~~i~d~~ 390 (569)
+++++.+++.+ +|+ ++++.||+||++..++.......... . ..........++|.|++++ +++|+|++
T Consensus 284 l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~-~v~i~d~~ 362 (525)
T PRK05851 284 VDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGM-EVRISPGD 362 (525)
T ss_pred CCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCc-EEEEECCC
Confidence 99999888864 344 59999999999765543221110000 0 0000112346799999999 69999988
Q ss_pred CCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHH
Q 008342 391 TNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEK 470 (569)
Q Consensus 391 ~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~ 470 (569)
++.+++.+ +.|||+++|++++.||++++..+ .+|||+|||+|+++ +|.++++||.||+|+++|++|+|.+||+
T Consensus 363 ~~~~~~~g--~~GEl~v~g~~~~~GY~~~~~~~----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~ 435 (525)
T PRK05851 363 GAAGVAGR--EIGEIEIRGASMMSGYLGQAPID----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIER 435 (525)
T ss_pred CCccCCCC--CeEEEEEecCchhhccccCCccC----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHH
Confidence 66678877 78999999999999999988643 37899999999997 7999999999999999999999999999
Q ss_pred HHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCC--cCCceEEecc---CCCCCCC
Q 008342 471 VLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY--WVPKSVVFAA---LPKSATG 545 (569)
Q Consensus 471 ~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~--~~p~~i~~~~---lP~t~~G 545 (569)
+|.+||.|.+++|++.+++..++.+.++++...... ..+.+.++++++++.+ ++|..+.+++ ||+|++|
T Consensus 436 ~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~G 509 (525)
T PRK05851 436 VAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGP------DEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSG 509 (525)
T ss_pred HHHhCCCcccceEEEEEecCCCCceeEEEEEEecCc------chHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcch
Confidence 999999999999999988887877776665442111 1234445555555554 8998888664 9999999
Q ss_pred cccHHHHHHHHHhc
Q 008342 546 KIQKHLLRAKAKEM 559 (569)
Q Consensus 546 Ki~r~~l~~~~~~~ 559 (569)
|++|++|++.+.+.
T Consensus 510 Ki~r~~L~~~~~~~ 523 (525)
T PRK05851 510 KLRRLAVKRSLEAA 523 (525)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-64 Score=546.93 Aligned_cols=495 Identities=18% Similarity=0.230 Sum_probs=389.7
Q ss_pred cccCHHHHHHHhhhhCCC-ceeeeeCC-eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 18 TALTPLWFINRAATLHPT-RKSVVYGS-KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~-~~a~~~~~-~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
+..|+.++|+++++++|+ ++|+.+.+ +++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|+
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~ 280 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRR 280 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCC
Confidence 457899999999999998 68887644 7899999999999999999887 59999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHH--HHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchh
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAE--EALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAI 173 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (569)
+++|+++.++.+++.+++++++++++|++.+..+... .....+. ...++.+++..... .. .....
T Consensus 281 v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~-~~----~~~~~ 347 (718)
T PRK08043 281 IPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLT--------QVRWVYLEDLKDDV-TT----ADKLW 347 (718)
T ss_pred cccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhc--------cccEEEhhhhhhhc-ch----hHHHH
Confidence 9999999999999999999999999999876543211 0000010 11222222210000 00 00000
Q ss_pred hHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHH
Q 008342 174 EYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY 253 (569)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 253 (569)
...+... +. .......++++++++|||||||.||+|.+||.++..........+++.++|++++.+|++|.+|+..
T Consensus 348 ~~~~~~~---~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~ 423 (718)
T PRK08043 348 IFAHLLM---PR-LAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTV 423 (718)
T ss_pred HHHHHhC---Cc-cccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHH
Confidence 0001000 00 0112245689999999999999999999999999988887777888999999999999999999865
Q ss_pred HH-HHHHhcceEEEecc-CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhh
Q 008342 254 TW-SLAALCGTSICLRQ-VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS 331 (569)
Q Consensus 254 ~~-~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~ 331 (569)
.+ ..+..|+++++.+. +++..+++.++++++|++.++|+++..+.+... ... ++++|.+++||+++++++.+.++
T Consensus 424 ~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~--~~~-~~~lr~i~~gg~~l~~~~~~~~~ 500 (718)
T PRK08043 424 GLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFAN--PYD-FARLRYVVAGAEKLQESTKQLWQ 500 (718)
T ss_pred HHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhcC--ccc-ccceEEEEEeCccCCHHHHHHHH
Confidence 44 44556776666653 567788999999999999999999988766421 222 78999999999999999999988
Q ss_pred h-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecC
Q 008342 332 Q-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS 410 (569)
Q Consensus 332 ~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~ 410 (569)
+ +|+++++.||+||+++.++.... .....+++|.|++++ +++++|.+ +. + +.|||+++|+
T Consensus 501 ~~~g~~l~~~YG~TE~~~~~~~~~~-----------~~~~~~svG~p~pg~-~~~i~d~~-~~----~--~~Gel~v~g~ 561 (718)
T PRK08043 501 DKFGLRILEGYGVTECAPVVSINVP-----------MAAKPGTVGRILPGM-DARLLSVP-GI----E--QGGRLQLKGP 561 (718)
T ss_pred HHcCCCeecccCcccccceEEecCC-----------cccCCCCCCCcCCCC-eeEEecCC-CC----C--CceEEEEecC
Confidence 4 59999999999999866543221 012347899999999 69999865 32 2 4599999999
Q ss_pred cccccccCC--cch-------hhh-hhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCcee
Q 008342 411 CVMKGYLKN--PKA-------NEE-AFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLE 480 (569)
Q Consensus 411 ~~~~gy~~~--~~~-------~~~-~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~ 480 (569)
+++.||+++ ++. +.. .+.+|||+|||+|++|+||++++.||.||+|+++|++|+|.+||+++.+++.+.+
T Consensus 562 ~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~ 641 (718)
T PRK08043 562 NIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQ 641 (718)
T ss_pred CccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccce
Confidence 999999983 332 111 2357999999999999999999999999999999999999999999999998888
Q ss_pred eEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhc-CCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 481 AAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 481 ~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
++|++.+++..|+.+++++. .. .. ..+++.++++++ |+.|++|..+.+++ ||+|++||++|++|++++.+
T Consensus 642 ~avv~~~~~~~ge~~v~~~~-~~--~~-----~~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 642 HATAIKSDASKGEALVLFTT-DS--EL-----TREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred EEEEEccCCCCCceEEEEEc-Cc--cc-----CHHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhc
Confidence 88899888888888887764 11 11 346799999987 99999999999877 99999999999999998876
Q ss_pred cC
Q 008342 559 MG 560 (569)
Q Consensus 559 ~~ 560 (569)
..
T Consensus 714 ~~ 715 (718)
T PRK08043 714 PE 715 (718)
T ss_pred cc
Confidence 44
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-64 Score=503.45 Aligned_cols=506 Identities=23% Similarity=0.322 Sum_probs=417.6
Q ss_pred HHHHHhhhhC-CCceeeeeCC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 24 WFINRAATLH-PTRKSVVYGS------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 24 ~~l~~~a~~~-p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
.+++++.+.. ++.+++++.+ ..+||.|+.+++.++|+.|.+.|+++||+|++++|+.++++++++||.++|++
T Consensus 68 n~~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai 147 (626)
T KOG1175|consen 68 NCLDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAI 147 (626)
T ss_pred hhhhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeE
Confidence 4556664444 8888988753 44999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccchH---------HHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHh
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFFS---------LAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA 167 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (569)
.+++...+++.++...+++.+++++|+.+.... ...++...+..... .....+.+.+..
T Consensus 148 ~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~--------- 215 (626)
T KOG1175|consen 148 HSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSR---PVWLDLIVSRRN--------- 215 (626)
T ss_pred EEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhccccccc---ccceeeEEeccc---------
Confidence 999999999999999999999999999764322 22222222221100 111111111111
Q ss_pred hhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHH-HHHHHHhHhHhCCCCCcEEEEcCCcc
Q 008342 168 LARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGA-YLMSLNGALIWGMNEGAVFLWTLPMF 246 (569)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~-~~~~~~~~~~~~~~~~d~~~~~~p~~ 246 (569)
....|+.++....+..+ ..+...+|+.+|+|||||||.||++.+++... +..+......++++++|++.+...+.
T Consensus 216 ---~d~~~~~~~~~a~~~~~-~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~G 291 (626)
T KOG1175|consen 216 ---RDLFWSLELKKASPEHP-CVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLG 291 (626)
T ss_pred ---ccccHHHHhhhcCCCCC-ceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccC
Confidence 13566776666666555 34567889999999999999999999999875 44445555678999999999999999
Q ss_pred chhhHHHHHH-HHHhcceEEEe--ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCC-cccceeeeecCCCC
Q 008342 247 HGNGWSYTWS-LAALCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP-LTNVVNVNTAGAPP 322 (569)
Q Consensus 247 ~~~g~~~~~~-~~~~g~~~~~~--~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~-l~~l~~~~~~g~~l 322 (569)
|+.|.++.+. .++.|++++++ .++++..+++++.++++|++++.|+.++.|.+......... +++||.+.++||++
T Consensus 292 Wi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi 371 (626)
T KOG1175|consen 292 WITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPI 371 (626)
T ss_pred eeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccC
Confidence 9999988777 45556666666 34589999999999999999999999998877755443321 47799999999999
Q ss_pred CHHHHHHhhhc-CC-eEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCC
Q 008342 323 PPSLLFAMSQK-GF-RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGK 400 (569)
Q Consensus 323 ~~~~~~~~~~~-~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~ 400 (569)
.++..+++.+. +. +|++.||+||+|+.++.+..+.. ...+++.+.|.++. .+.|+|++ |..++.++
T Consensus 372 ~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~---------p~~pg~~~~p~~g~-~v~i~de~-g~~~~~~~- 439 (626)
T KOG1175|consen 372 NPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKL---------PIKPGSAGKPFPGY-DVQILDEN-GNELPPST- 439 (626)
T ss_pred CcchHHHHHHhcCccchhhceeeeccCceeeeccCCCC---------CcCccccCCCCCCc-ceEEECCC-CCCcCCCC-
Confidence 99999999855 66 69999999999999988764321 34568999999999 59999995 88888765
Q ss_pred ceEEEEEecC---cccccccCCcc-hhhhhhc--CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhc
Q 008342 401 TIGEIVMRGS---CVMKGYLKNPK-ANEEAFA--NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 474 (569)
Q Consensus 401 ~~Gel~v~~~---~~~~gy~~~~~-~~~~~~~--~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 474 (569)
+.|+|+++.+ +++++||++++ -...-|. .|+|+|||.+++|+||+++++||+||+|+++|.++.+.|||++|.+
T Consensus 440 ~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~ 519 (626)
T KOG1175|consen 440 GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVE 519 (626)
T ss_pred ceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhh
Confidence 6899999985 67899999988 3333343 8999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHH
Q 008342 475 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLR 553 (569)
Q Consensus 475 ~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (569)
||.|.|++|++.+++..||.+.+||+++++. .+.+.+.++|++.+|+.+.++..|+.|.+++ ||+|.+||+.|+.||
T Consensus 520 hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~--~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lr 597 (626)
T KOG1175|consen 520 HPAVAESAVVGSPDPIKGEVVLAFVVLKSGS--HDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALR 597 (626)
T ss_pred CcchhheeeecCCCCCCCeEEEEEEEEcCCC--CChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHH
Confidence 9999999999999999999999999999983 3455689999999999999999999999886 999999999999999
Q ss_pred HHHHhc
Q 008342 554 AKAKEM 559 (569)
Q Consensus 554 ~~~~~~ 559 (569)
++....
T Consensus 598 ki~~g~ 603 (626)
T KOG1175|consen 598 KIASGK 603 (626)
T ss_pred HHhccC
Confidence 998876
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=527.72 Aligned_cols=511 Identities=24% Similarity=0.319 Sum_probs=411.1
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
..++.++.++|.++++++|+++|+++.+..+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 19 ~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~ 98 (557)
T PRK07059 19 ASQYPSLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGY 98 (557)
T ss_pred CCCCCCHHHHHHHHHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCe
Confidence 44457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCc-chh------------
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESC-DSK------------ 162 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~------------ 162 (569)
+++|++|.++.+++.++++.++++++|+++.....+....... ....++....... ...
T Consensus 99 ~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (557)
T PRK07059 99 VVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKT--------AVKHVVVASMGDLLGFKGHIVNFVVRRVK 170 (557)
T ss_pred EEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhccc--------CCceeEEeccccccccccccccccccccc
Confidence 9999999999999999999999999999877655444432211 1222222211100 000
Q ss_pred -hhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHh----CC---C
Q 008342 163 -QLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIW----GM---N 234 (569)
Q Consensus 163 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~----~~---~ 234 (569)
............+.+++..............++++++++|||||||.||+|.++|.+++.+.......+ .. .
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 250 (557)
T PRK07059 171 KMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRP 250 (557)
T ss_pred ccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCC
Confidence 000011123344555554433222222335678999999999999999999999999876654333221 11 1
Q ss_pred CCcEEEEcCCccchhhHHH-HHHHHHhcceEEEec-cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccc
Q 008342 235 EGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 312 (569)
Q Consensus 235 ~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l 312 (569)
....+++.+|++|.+++.. .+..+..|++.++.+ ..++..+++.++++++|.+.++|.++..+.......... ++++
T Consensus 251 ~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~-~~~l 329 (557)
T PRK07059 251 DQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLD-FSKL 329 (557)
T ss_pred CCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCC-chhh
Confidence 2456788899999988754 344556677766664 457889999999999999999999999998876544444 7899
Q ss_pred eeeeecCCCCCHHHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCC
Q 008342 313 VNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDART 391 (569)
Q Consensus 313 ~~~~~~g~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~ 391 (569)
+.++.||+++++.+.++|.+ +++++++.||+||++.+++.+.... .....++|.|.+++ .++++|++
T Consensus 330 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~vG~p~~g~-~v~i~d~~- 397 (557)
T PRK07059 330 IVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDA----------TEFSGTIGLPLPST-EVSIRDDD- 397 (557)
T ss_pred eEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchhhcCCCCC----------CCcCCcccCccCCc-EEEEECCC-
Confidence 99999999999999988875 4999999999999987665443111 11236899999999 69999976
Q ss_pred CcccCCCCCceEEEEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHH
Q 008342 392 NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEK 470 (569)
Q Consensus 392 ~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~ 470 (569)
+++++.| +.|||+++|+.++.||+++++.+...| .+|||+|||+++++++|.+++.||.+|+++++|.+++|.+||.
T Consensus 398 ~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~ 475 (557)
T PRK07059 398 GNDLPLG--EPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEE 475 (557)
T ss_pred CCCCCCC--CceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHH
Confidence 8888887 789999999999999999998888777 4799999999999999999999999999999999999999999
Q ss_pred HHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccH
Q 008342 471 VLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQK 549 (569)
Q Consensus 471 ~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r 549 (569)
+|.++++|.+++|++.++...|+.++++++..... . ..+++.+++.+.++.+++|..+.+++ +|+|++||++|
T Consensus 476 ~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~-~-----~~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r 549 (557)
T PRK07059 476 VVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPA-L-----TEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILR 549 (557)
T ss_pred HHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCC-C-----CHHHHHHHHHHhcccccCCcEEEEeccCCCCcccceeH
Confidence 99999999999999998888888888888865432 1 34689999999999999999999877 99999999999
Q ss_pred HHHHHH
Q 008342 550 HLLRAK 555 (569)
Q Consensus 550 ~~l~~~ 555 (569)
+.|+++
T Consensus 550 ~~L~~~ 555 (557)
T PRK07059 550 RELRDG 555 (557)
T ss_pred HHHHhh
Confidence 999864
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=528.79 Aligned_cols=508 Identities=24% Similarity=0.331 Sum_probs=409.2
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALS-KLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~-~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
..++.++|++++..+|+++|+++.++++||+||.+++.++|+.|. +.|+++||+|+++++|++++++++|||+++|+++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 103 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTV 103 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 458999999999999999999999999999999999999999997 6899999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCc---chh-----h------
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESC---DSK-----Q------ 163 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~-----~------ 163 (569)
+|++|.++.+++.+++++++++++++++.....+....... ....++.+..... ... .
T Consensus 104 v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (560)
T PRK08751 104 VNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT--------PVKQVITTGLGDMLGFPKAALVNFVVKYVKK 175 (560)
T ss_pred eccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC--------CccEEEEechhhhcccccchhhhhhhhhhhc
Confidence 99999999999999999999999999987765554433222 1223333211000 000 0
Q ss_pred -hHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhC----CCCC-c
Q 008342 164 -LEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG----MNEG-A 237 (569)
Q Consensus 164 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~----~~~~-d 237 (569)
.......+...+.+.+...............+++++++|||||||.||+|.++|.++..........++ +..+ +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (560)
T PRK08751 176 LVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCE 255 (560)
T ss_pred cccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCc
Confidence 000001122334444433222111122346789999999999999999999999999877766555443 3333 5
Q ss_pred EEEEcCCccchhhHHHH-HHHHHhcceEEEe-ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceee
Q 008342 238 VFLWTLPMFHGNGWSYT-WSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNV 315 (569)
Q Consensus 238 ~~~~~~p~~~~~g~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~ 315 (569)
++++..|++|.+++... +..+..|++.++. ..+++..+++.++++++|++.++|.++..+.+........ ++++|.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-l~~lr~v 334 (560)
T PRK08751 256 VVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQID-FSSLKMT 334 (560)
T ss_pred eEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcc-hhhheee
Confidence 67788999999987543 4445567777665 4578899999999999999999999999998875444444 7899999
Q ss_pred eecCCCCCHHHHHHhhhc-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcc
Q 008342 316 NTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQP 394 (569)
Q Consensus 316 ~~~g~~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~ 394 (569)
++||+++++.+.+.+++. ++++++.||+||+++.++.+.... ....+++|.|.+++ .++++|++ +++
T Consensus 335 ~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~vG~~~~~~-~v~i~d~~-~~~ 402 (560)
T PRK08751 335 LGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPLTL----------KEYNGSIGLPIPST-DACIKDDA-GTV 402 (560)
T ss_pred eeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCceecccccc----------cccCCCcCccCCCc-eEEEECCC-CCC
Confidence 999999999999998854 899999999999987665443110 12236789999999 69999965 888
Q ss_pred cCCCCCceEEEEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHh
Q 008342 395 VPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLY 473 (569)
Q Consensus 395 ~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~ 473 (569)
++.+ +.|||+++|+.++.||+++++.+...| .+|||+|||+|+++++|.+++.||.+|+|+++|.+++|.+||..|.
T Consensus 403 ~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~ 480 (560)
T PRK08751 403 LAIG--EIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIA 480 (560)
T ss_pred CCCC--CceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHH
Confidence 8877 789999999999999999999888777 4799999999999999999999999999999999999999999999
Q ss_pred cCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHH
Q 008342 474 LHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLL 552 (569)
Q Consensus 474 ~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l 552 (569)
.++.|.+++|++.++...|+.+.++++.... .. ..+++.++++++++.+++|..+.+++ ||+|++||++|++|
T Consensus 481 ~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~-~~-----~~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L 554 (560)
T PRK08751 481 MMPGVLEVAAVGVPDEKSGEIVKVVIVKKDP-AL-----TAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRREL 554 (560)
T ss_pred hCcCeeeeEEEecCCCCCCceEEEEEEcCCC-CC-----CHHHHHHHHHHhhhhccCCeEEEEhhhCCCCccccccHHHH
Confidence 9999999999999988888888777765432 22 45689999999999999999999877 99999999999999
Q ss_pred HHH
Q 008342 553 RAK 555 (569)
Q Consensus 553 ~~~ 555 (569)
++.
T Consensus 555 ~~~ 557 (560)
T PRK08751 555 RDA 557 (560)
T ss_pred HHh
Confidence 876
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-64 Score=577.40 Aligned_cols=515 Identities=20% Similarity=0.265 Sum_probs=416.7
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeC-CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcC
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYG-SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~-~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 94 (569)
.....++.++++++++++|+++|+++. ++++||+||.++++++|++|.+ ++++||+|+++++|+++++++++||+++|
T Consensus 611 ~~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G 689 (1146)
T PRK08633 611 KEALPPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAG 689 (1146)
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcC
Confidence 344578999999999999999999874 5899999999999999999987 48999999999999999999999999999
Q ss_pred ceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHH--HHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcch
Q 008342 95 AVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALK--MMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGA 172 (569)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (569)
++++|+++..+.+++.++++++++++++++++..+.+..... ..+ ....++.+++...... ..
T Consensus 690 ~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--------~~ 754 (1146)
T PRK08633 690 KVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELP-------ENVKVIYLEDLKAKIS--------KV 754 (1146)
T ss_pred CEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcc-------cCceEEEeehhccccc--------hh
Confidence 999999999999999999999999999998765544331100 011 1234444433211000 00
Q ss_pred hhHHhhhhcCC-CC----CCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccc
Q 008342 173 IEYEKFLETGD-PE----FAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFH 247 (569)
Q Consensus 173 ~~~~~~l~~~~-~~----~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 247 (569)
..+.+...... +. ........++++++++|||||||.||+|.+||+++..........++..++|++++.+|++|
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 834 (1146)
T PRK08633 755 DKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834 (1146)
T ss_pred HHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHH
Confidence 11111111110 00 00012346789999999999999999999999999988888888888999999999999999
Q ss_pred hhhHHH-HHHHHHhcceEEEec-cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHH
Q 008342 248 GNGWSY-TWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPS 325 (569)
Q Consensus 248 ~~g~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~ 325 (569)
.+|+.. .+.....|+++++.+ .+++..+++.++++++|++.++|++++.+.+........ ++++|.+++||++++++
T Consensus 835 ~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~~~~~ 913 (1146)
T PRK08633 835 SFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLM-FASLRLVVAGAEKLKPE 913 (1146)
T ss_pred HHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCccc-CCCeeeEEEcCCcCCHH
Confidence 999876 445556677766654 478999999999999999999999999998765444344 78999999999999999
Q ss_pred HHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEE
Q 008342 326 LLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGE 404 (569)
Q Consensus 326 ~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 404 (569)
+.+++++ +++++++.||+||++++++.+.......... ........++|.|.+++ +++|+|++++++++.| +.||
T Consensus 914 ~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~-~~~~~~~~~vG~p~~~~-~v~i~d~~~~~~~~~g--~~Ge 989 (1146)
T PRK08633 914 VADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK-RQTGSKEGSVGMPLPGV-AVRIVDPETFEELPPG--EDGL 989 (1146)
T ss_pred HHHHHHHHhCCCeecccccccCcceEEEecCcccccccc-cccCCCCCCccccCCCC-EEEEEcCCCCccCCCC--CceE
Confidence 9999985 5999999999999987665443211100000 01112357899999999 6999998889999988 7899
Q ss_pred EEEecCcccccccCCcchhhhhhcC----CeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCC--Cc
Q 008342 405 IVMRGSCVMKGYLKNPKANEEAFAN----GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP--LV 478 (569)
Q Consensus 405 l~v~~~~~~~gy~~~~~~~~~~~~~----g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~--~v 478 (569)
|+++|++++.||+++++.+.+.|.+ |||+|||++++++||.+++.||.||+|+++|++|+|.+||++|.+|| .+
T Consensus 990 l~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~ 1069 (1146)
T PRK08633 990 ILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEE 1069 (1146)
T ss_pred EEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCC
Confidence 9999999999999999999988877 99999999999999999999999999999999999999999999998 46
Q ss_pred eeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHh-cCCCCcCCceEEecc-CCCCCCCcccHHHHHHHH
Q 008342 479 LEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA 556 (569)
Q Consensus 479 ~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (569)
.+++|++.+++..|+.++++++... . ..+++.+++++ .++.|++|..+++++ ||+|++||++|++|+++.
T Consensus 1070 ~~~~v~~~~~~~~g~~~~~~v~~~~-~-------~~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~ 1141 (1146)
T PRK08633 1070 VVFAVTAVPDEKKGEKLVVLHTCGA-E-------DVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELA 1141 (1146)
T ss_pred ceEEEEeccCCCCCcEEEEEEecCc-c-------CHHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHH
Confidence 6899999999988999998887621 1 34567777764 699999999998777 999999999999999987
Q ss_pred Hhc
Q 008342 557 KEM 559 (569)
Q Consensus 557 ~~~ 559 (569)
.+.
T Consensus 1142 ~~~ 1144 (1146)
T PRK08633 1142 LAL 1144 (1146)
T ss_pred HHh
Confidence 664
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-63 Score=521.80 Aligned_cols=509 Identities=25% Similarity=0.375 Sum_probs=405.0
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
+.++.++|+++++.+|+++|+.+.++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 20 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v 99 (541)
T TIGR03205 20 RGTLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVV 99 (541)
T ss_pred CCCHHHHHHHHHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEE
Confidence 55899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhh---hHHhhhcchhhH
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ---LEYALARGAIEY 175 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~ 175 (569)
|++|.++.+++.++++.++++++|+++.. .......+.... . ....++.+......... ...........+
T Consensus 100 ~l~~~~~~~~l~~~i~~~~~~~vi~~~~~-~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (541)
T TIGR03205 100 HLSPLDGERALSHKLSDSGARLLITSDLA-ALLPMALKFLEK---G--LLDRLIVCEDDNWGKVGTPQAPIPADPRIVTY 173 (541)
T ss_pred ecCCCCCHHHHHHHHhhcCceEEEEeCch-hhhHHHHHhhhc---c--cceEEEEecccccccccccccccCCCcccccH
Confidence 99999999999999999999999998642 111111111110 0 12233333321100000 000011223456
Q ss_pred HhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHh------CCCCCcEEEEcCCccchh
Q 008342 176 EKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIW------GMNEGAVFLWTLPMFHGN 249 (569)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~------~~~~~d~~~~~~p~~~~~ 249 (569)
++++......... ....++++++++|||||||.||+|.++|.++....... ..+ .....+++++..|++|.+
T Consensus 174 ~~~~~~~~~~~~~-~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~ 251 (541)
T TIGR03205 174 ADFVKGAAAPAEW-PAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIY 251 (541)
T ss_pred HHHHhcCCCCCCC-CCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHH
Confidence 6665433222111 23456789999999999999999999999987654322 221 223457899999999998
Q ss_pred hHHHHHHH-HHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHH
Q 008342 250 GWSYTWSL-AALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLF 328 (569)
Q Consensus 250 g~~~~~~~-~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~ 328 (569)
++...+.. +..|++++....+++..+++.|+++++|++.++|+++..+.+........ +++++.+++||+++++++.+
T Consensus 252 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~i~~gg~~~~~~~~~ 330 (541)
T TIGR03205 252 ALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRD-LSSLATIGSGGAPLPVEVAN 330 (541)
T ss_pred HHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccC-ccccceEEEccccCCHHHHH
Confidence 88665544 44566665556789999999999999999999999999988754322233 78899999999999999998
Q ss_pred Hhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeee-CCCCcccCCCCCceEEEE
Q 008342 329 AMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVID-ARTNQPVPADGKTIGEIV 406 (569)
Q Consensus 329 ~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d-~~~~~~~~~~~~~~Gel~ 406 (569)
++.+ .+.++++.||+||++..++.+.... .....++|.|.+++ .+++.+ ++++++++.+ +.|||+
T Consensus 331 ~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~v~~~d~~~~~~~~g--~~Gel~ 397 (541)
T TIGR03205 331 FFERKTGLKLKSGWGMTETCSPGTGHPPEG----------PDKPGSIGLMLPGI-ELDVVSLDDPTKVLPPG--EVGELR 397 (541)
T ss_pred HHHHHhCCCeecccccccCCcccccCCCCC----------CCCCCCcceeccCc-eeEEEecCCCCccCCCC--CeeEEE
Confidence 8875 4899999999999987666543211 11236789999998 587764 3457788877 789999
Q ss_pred EecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEee
Q 008342 407 MRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 486 (569)
Q Consensus 407 v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 486 (569)
++|++++.||++++..+.+.|.++||+|||+++++++|++++.||.||+|+.+|.+++|.+||.++.+++.|.+++|++.
T Consensus 398 v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~ 477 (541)
T TIGR03205 398 IRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGI 477 (541)
T ss_pred EecCCccccccCChhhhHhhhccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHH
Q 008342 487 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLR 553 (569)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (569)
+++..++.+++++++.++.... ..+++.++++++|+.|++|..+.+++ ||+|++||++|++|+
T Consensus 478 ~~~~~~~~~~~~v~~~~~~~~~----~~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 478 PDQYRGEAAKAFVKLRPGAKPF----SLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred CCcccCceEEEEEEECCCCCcC----CHHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence 9888888899999887653211 35789999999999999999999877 999999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-63 Score=521.79 Aligned_cols=490 Identities=22% Similarity=0.284 Sum_probs=405.7
Q ss_pred CHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeec
Q 008342 21 TPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSI 100 (569)
Q Consensus 21 ~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 100 (569)
++.+.|.+.+..+|+++|+...++++||+||.+++.++|+.|.+.|+++|++|+++++|+.++++++|||+++|++++|+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~ 80 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV 80 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhh
Q 008342 101 NIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLE 180 (569)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 180 (569)
++.++.+++.++++..+++.++++.+...... ...++.+.. ...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~---------------~~~~~~~~~------------------~~~~~~ 127 (502)
T TIGR01734 81 DTSIPSERIEMIIEAAGPELVIHTAELSIDAV---------------GTQIITLSA------------------LEQAET 127 (502)
T ss_pred CCcChHHHHHHHHHhcCCCEEEeccccccccc---------------CCceEEchH------------------hhhhhh
Confidence 99999999999999999999999876432211 011222211 011111
Q ss_pred cCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHHh
Q 008342 181 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAAL 260 (569)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~ 260 (569)
...+ ........++++++++|||||||.||+|.++|+++.....+....++...+++++...|++|..++...+.++..
T Consensus 128 ~~~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~ 206 (502)
T TIGR01734 128 SGGP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLAS 206 (502)
T ss_pred hcCC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHC
Confidence 1111 111123467789999999999999999999999999888887778889999999999999999999888888888
Q ss_pred cceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc--CC
Q 008342 261 CGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GF 335 (569)
Q Consensus 261 g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~--~~ 335 (569)
|+++++.+. .++..+++.+++++++.+.++|.+++.++......... +++++.++++|+++++++.+++.+. ++
T Consensus 207 G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~-~~~l~~~~~~G~~~~~~~~~~~~~~~~~~ 285 (502)
T TIGR01734 207 GGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQEN-YPHLTHFLFCGEELPVKTAKALLERFPKA 285 (502)
T ss_pred CCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccccccc-CCcccEEEEcCCcCCHHHHHHHHHHCCCc
Confidence 998888754 57899999999999999999999998877654333333 7899999999999999999998854 89
Q ss_pred eEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccccc
Q 008342 336 RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKG 415 (569)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~g 415 (569)
++++.||+||+++.++......+. .......++|.+.+++ +++|+|++ +++++.+ +.|||+++|+.++.|
T Consensus 286 ~~~~~yG~tE~~~~~~~~~~~~~~------~~~~~~~~vg~~~~~~-~~~i~~~~-~~~~~~g--~~Gel~v~g~~~~~g 355 (502)
T TIGR01734 286 TIYNTYGPTEATVAVTSVKITQEI------LDQYPRLPIGFAKPDM-NLFIMDEE-GEPLPEG--EKGEIVIVGPSVSKG 355 (502)
T ss_pred EEEeCccCCcceEEEEEEEccccc------cccCCccccccccCCC-EEEEECCC-CCCCCCC--CeeEEEEcccccccc
Confidence 999999999997544432211110 0111235689999999 69999987 8888877 799999999999999
Q ss_pred ccCCcchhhhhhc----CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeec-CCC
Q 008342 416 YLKNPKANEEAFA----NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP-DER 490 (569)
Q Consensus 416 y~~~~~~~~~~~~----~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~-~~~ 490 (569)
|+++++.+...|. .+||+|||+|+++++ ++++.||.+|+|+++|++|+|.+||+.|.++|.|.++++++.. ...
T Consensus 356 y~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~ 434 (502)
T TIGR01734 356 YLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDH 434 (502)
T ss_pred ccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCC
Confidence 9999988887763 359999999999966 9999999999999999999999999999999999999999865 444
Q ss_pred CCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHH
Q 008342 491 WGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK 557 (569)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~ 557 (569)
.++.++++++....... +.....+++.+.++++++.+.+|..+++++ ||+|++||++|++|++++.
T Consensus 435 ~~~~~~~~v~~~~~~~~-~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 435 KVEYLIAAIVPETEDFE-KEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred CceEEEEEEEecccccc-cchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence 56778888887764322 111244789999999999999999999887 9999999999999998764
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-65 Score=627.57 Aligned_cols=488 Identities=20% Similarity=0.269 Sum_probs=416.0
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
..++.++|+++++++|+++|+++.++++||+||+++++++|+.|.+.|+++|++|++++++++++++++|||+++|++++
T Consensus 3094 ~~~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~v 3173 (3956)
T PRK12467 3094 ERLVHQLIEAQVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYV 3173 (3956)
T ss_pred cccHHHHHHHHHHhCCCcceEeeCCcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEee
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
|++|.++.+++.+++++++++++|++......+... ....++.++....
T Consensus 3174 pld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~------------~~~~~~~~~~~~~------------------- 3222 (3956)
T PRK12467 3174 PLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP------------AGDTALTLDRLDL------------------- 3222 (3956)
T ss_pred cCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc------------cCCceeeecchhh-------------------
Confidence 999999999999999999999999987653322110 1122233322110
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
.............++++++|+|||||||.||||+++|+++.+........++++++|+++...|++|..+....+.++
T Consensus 3223 --~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L 3300 (3956)
T PRK12467 3223 --NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTL 3300 (3956)
T ss_pred --cccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHH
Confidence 001111112235678999999999999999999999999999999888899999999999999999999988888888
Q ss_pred HhcceEEEecc--CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc--C
Q 008342 259 ALCGTSICLRQ--VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--G 334 (569)
Q Consensus 259 ~~g~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~--~ 334 (569)
+.|+++++.+. +++..+++.|+++++|++.++|+++..+.+..... . ++++|.+++|||++++++.++|.+. +
T Consensus 3301 ~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~--~-~~~lr~~~~gGe~~~~~~~~~~~~~~~~ 3377 (3956)
T PRK12467 3301 ICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGGA--D-CASLDIYVFGGEAVPPAAFEQVKRKLKP 3377 (3956)
T ss_pred hCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccccc--C-CCCceEEEEecCCCCHHHHHHHHHhCCC
Confidence 99998888765 78999999999999999999999999997653221 2 7889999999999999999999854 7
Q ss_pred CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccc
Q 008342 335 FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK 414 (569)
Q Consensus 335 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 414 (569)
+++++.||+||++..++......+ ........++|.|++++ ++.|+|++ ++++|.| +.|||+|+|+.+++
T Consensus 3378 ~~l~n~YG~TE~~~~~~~~~~~~~------~~~~~~~~~iG~p~~~~-~~~v~d~~-~~~vp~G--~~GEL~i~G~~v~~ 3447 (3956)
T PRK12467 3378 RGLTNGYGPTEAVVTVTLWKCGGD------AVCEAPYAPIGRPVAGR-SIYVLDGQ-LNPVPVG--VAGELYIGGVGLAR 3447 (3956)
T ss_pred CEEEeCcccchhEeeeEEEecccc------cccCCCCCCCccccCCC-EEEEECCC-CCCCCCC--CCceEEEcchhhhh
Confidence 889999999999876654432111 01112236799999999 69999976 8999988 89999999999999
Q ss_pred cccCCcchhhhhhc--------CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEee
Q 008342 415 GYLKNPKANEEAFA--------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 486 (569)
Q Consensus 415 gy~~~~~~~~~~~~--------~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 486 (569)
||+++++.+.++|. .+||+|||+|++++||.++++||.||+||++|++|.+.|||++|.++|+|.+++|++.
T Consensus 3448 GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~ 3527 (3956)
T PRK12467 3448 GYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLAR 3527 (3956)
T ss_pred hccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEe
Confidence 99999999999984 2479999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 487 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
+. ..++.+++|++....... ..++++++++++||.|++|..+++.+ ||+|++||++|++|++....
T Consensus 3528 ~~-~~~~~lva~v~~~~~~~~-----~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~~ 3594 (3956)
T PRK12467 3528 DG-AGGKQLVAYVVPADPQGD-----WRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKALPDPDAK 3594 (3956)
T ss_pred cC-CCCcEEEEEEeCCCCCcc-----cHHHHHHHHhccCChhhCCCeeeeeccCCCCCCCccchhhcCCCCcc
Confidence 54 357889999987765333 56789999999999999999998777 99999999999999876543
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-63 Score=518.70 Aligned_cols=496 Identities=24% Similarity=0.335 Sum_probs=410.0
Q ss_pred HHHHHHHh-hhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeec
Q 008342 22 PLWFINRA-ATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSI 100 (569)
Q Consensus 22 l~~~l~~~-a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 100 (569)
..++++++ ++.+|+++|++..+..+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|+
T Consensus 6 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l 85 (508)
T TIGR02262 6 AEDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVAL 85 (508)
T ss_pred HHHHHHHHHhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeec
Confidence 34667776 67799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhh
Q 008342 101 NIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLE 180 (569)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 180 (569)
++.++.+++.++++.++++++|++++..+.+.+.....+ ...+++.++.... ....+.++..
T Consensus 86 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-----------~~~~~~~~~~ 147 (508)
T TIGR02262 86 NTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSP-------HLEHRVVVGRPEA-----------GEVQLAELLA 147 (508)
T ss_pred cCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCC-------CccEEEEeCCCCc-----------ccccHHHHhh
Confidence 999999999999999999999999887666555443333 3344444443211 1123344433
Q ss_pred cCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHH-hHhHhCCCCCcEEEEcCCccchhhHHHHHHH-H
Q 008342 181 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLN-GALIWGMNEGAVFLWTLPMFHGNGWSYTWSL-A 258 (569)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~-~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~-~ 258 (569)
....... .....++++++++|||||||.||+|.++|+++...... ....++++++|+++..+|++|.+++...+.. +
T Consensus 148 ~~~~~~~-~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l 226 (508)
T TIGR02262 148 TESEQFK-PAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPM 226 (508)
T ss_pred cCCCccC-CCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHH
Confidence 2222211 12345688999999999999999999999999877655 3456788999999999999999998655544 4
Q ss_pred HhcceEEEec-cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-cCCe
Q 008342 259 ALCGTSICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFR 336 (569)
Q Consensus 259 ~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~~~~ 336 (569)
..|++.++.+ .+++..+++.|+++++|.+.++|.++..+.+........ ..++|.++++|+++++++.+.|.+ ++++
T Consensus 227 ~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~~~~~~~~ 305 (508)
T TIGR02262 227 SVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAED-QVRLRLCTSAGEALPAEVGQRWQARFGVD 305 (508)
T ss_pred HcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccc-cccceeEEEcCCCCCHHHHHHHHHHhCCc
Confidence 5566666654 368999999999999999999999998887654332223 678999999999999999999885 5999
Q ss_pred EecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccc
Q 008342 337 ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY 416 (569)
Q Consensus 337 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy 416 (569)
+++.||+||++++++.+... ....+++|.|.+++ .++++|+ ++.+++.+ +.|||+++|++++.||
T Consensus 306 v~~~YG~tE~~~~~~~~~~~-----------~~~~~~~G~~~~g~-~v~i~d~-~~~~~~~g--~~Gel~i~~~~~~~gY 370 (508)
T TIGR02262 306 IVDGIGSTEMLHIFLSNLPG-----------DVRYGTSGKPVPGY-RLRLVGD-GGQDVAAG--EPGELLISGPSSATMY 370 (508)
T ss_pred hhhCccccccCceeecCCcc-----------CCCCCCcCCCCCCc-EEEEECC-CCCCCCCC--CeeEEEEecCcccccc
Confidence 99999999998765543211 01236789999998 6999994 58889887 7999999999999999
Q ss_pred cCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceee
Q 008342 417 LKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC 496 (569)
Q Consensus 417 ~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 496 (569)
+++++.+...|.++||+|||+++++++|.+++.||.+|+|+.+|.+++|.+||+.|.++++|.++++++.++...++.+.
T Consensus 371 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~ 450 (508)
T TIGR02262 371 WNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPK 450 (508)
T ss_pred CCCHHHhHhhhhcCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877778888
Q ss_pred EEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHH
Q 008342 497 AFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 554 (569)
Q Consensus 497 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (569)
+++++.+.... .+...+++.+.++++|+.+++|..+.+++ ||+|++||++|+.|++
T Consensus 451 ~~v~~~~~~~~--~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~ 507 (508)
T TIGR02262 451 AFIVLRPGQDI--DTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLRE 507 (508)
T ss_pred EEEEeCCCCcc--ccccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCCcEehhhccC
Confidence 88887765432 12256789999999999999999988666 9999999999999875
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-64 Score=579.73 Aligned_cols=492 Identities=19% Similarity=0.207 Sum_probs=408.0
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
..+..++.++|+++++.+|+++|+++.++++||+||.++++++|+.|.+.|+++|++|++++++++++++++|||+++|+
T Consensus 454 ~~~~~~l~~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~ 533 (1296)
T PRK10252 454 EIPETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGA 533 (1296)
T ss_pred CCCcCCHHHHHHHHHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhH
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEY 175 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (569)
+++|++|.++.+++.++++++++++++++.+....+... + ...+..+..
T Consensus 534 ~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~----~--------~~~~~~~~~------------------- 582 (1296)
T PRK10252 534 AWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV----P--------DLTSLCYNA------------------- 582 (1296)
T ss_pred EEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC----C--------Cceeeeccc-------------------
Confidence 999999999999999999999999999987654322110 0 001111110
Q ss_pred HhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHH
Q 008342 176 EKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 255 (569)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (569)
....... .......++++++|+|||||||.||||+++|+++.+...+....+++.++|++++..|++|..++...+
T Consensus 583 --~~~~~~~--~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~ 658 (1296)
T PRK10252 583 --PLAPQGA--APLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFF 658 (1296)
T ss_pred --ccccccC--CCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHH
Confidence 0000000 011123567899999999999999999999999999999888899999999999999999999988888
Q ss_pred HHHHhcceEEEec---cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCC-CCCcccceeeeecCCCCCHHHHHHhh
Q 008342 256 SLAALCGTSICLR---QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT-ILPLTNVVNVNTAGAPPPPSLLFAMS 331 (569)
Q Consensus 256 ~~~~~g~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~l~~l~~~~~~g~~l~~~~~~~~~ 331 (569)
.++..|+++++.+ ..++..+++.++++++|++.++|+++..+++...... ...++++|.+++||+++++++.+++.
T Consensus 659 ~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~ 738 (1296)
T PRK10252 659 WPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQ 738 (1296)
T ss_pred HHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHH
Confidence 8888888888764 3688999999999999999999999998887643322 11267899999999999999999998
Q ss_pred hc-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecC
Q 008342 332 QK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS 410 (569)
Q Consensus 332 ~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~ 410 (569)
+. ++++++.||+||++..++.+...... .........++|.|++++ ++.|+|+. ++++|.| +.|||+++|+
T Consensus 739 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~----~~~~~~~~~~iG~p~~~~-~~~i~d~~-~~~~~~g--~~Gel~i~g~ 810 (1296)
T PRK10252 739 QLTGAPLHNLYGPTEAAVDVSWYPAFGEE----LAAVRGSSVPIGYPVWNT-GLRILDAR-MRPVPPG--VAGDLYLTGI 810 (1296)
T ss_pred hcCCCEEEeCCCcchhhheeeeeeccccc----ccccCCCCCCcccccCCC-EEEEECCC-CCCCCCC--CceEEEeccc
Confidence 65 89999999999998766554322110 000112236789999999 69999975 8999988 8999999999
Q ss_pred cccccccCCcchhhhhhc-------CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEE
Q 008342 411 CVMKGYLKNPKANEEAFA-------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483 (569)
Q Consensus 411 ~~~~gy~~~~~~~~~~~~-------~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 483 (569)
.++.||+++++.+..+|. ++||+|||+|++++||.++++||.||+||++|.+|++.+||++|.++|.|.++.|
T Consensus 811 ~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v 890 (1296)
T PRK10252 811 QLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVT 890 (1296)
T ss_pred ccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEE
Confidence 999999999999998883 3499999999999999999999999999999999999999999999999999987
Q ss_pred Eeec----CCCCC--ceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHH
Q 008342 484 VARP----DERWG--ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK 555 (569)
Q Consensus 484 ~~~~----~~~~g--~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (569)
+... +...| ..++++++...+... ..++|+++++++||.|++|..+.+++ ||+|++||++|++|++.
T Consensus 891 ~~~~~~~~~~~~~~~~~lva~v~~~~~~~~-----~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~~ 964 (1296)
T PRK10252 891 HACVINQAAATGGDARQLVGYLVSQSGLPL-----DTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPLP 964 (1296)
T ss_pred EEEeccccccCCCCccEEEEEEEcCCCCCC-----CHHHHHHHHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCCC
Confidence 6542 11112 368888887765432 45789999999999999999998776 99999999999999753
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=507.09 Aligned_cols=503 Identities=26% Similarity=0.321 Sum_probs=386.7
Q ss_pred cccCHHHHHHHhhhhCCCceeeeeCC----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhc
Q 008342 18 TALTPLWFINRAATLHPTRKSVVYGS----KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMA 93 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~~~a~~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 93 (569)
...++..++.+.++.+|+.+++.+.. ..+||+|+.+++.++|.+|+..|+..||+|+|++.|+++|+++.+||+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~ 93 (613)
T COG1022 14 EIHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILAL 93 (613)
T ss_pred hcccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 35689999999999999999988654 88999999999999999999999977999999999999999999999999
Q ss_pred CceEeeccccCCHHHHHHHHhcCCceEEEEcccchH-HHHHHHHHHhhhcCCCCCcCeEEEecC----CCc-chhhhHHh
Q 008342 94 GAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFS-LAEEALKMMEANSEGKLKTPHLIVIGD----ESC-DSKQLEYA 167 (569)
Q Consensus 94 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~-~~~~~~~~ 167 (569)
|++.||+.++.+++++.++|+++.++++|+++.... .+......++ .....+...+ ... ....++..
T Consensus 94 g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (613)
T COG1022 94 GAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCP-------KVVDLIVIIDLVREAVEAKALVLEVF 166 (613)
T ss_pred CCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhcccc-------chhhhhhhhhhhhhccchhhcccccc
Confidence 999999999999999999999999999999985433 3332222111 0000000000 000 00000000
Q ss_pred hhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhC-CCCCcEEEEcCCcc
Q 008342 168 LARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG-MNEGAVFLWTLPMF 246 (569)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~-~~~~d~~~~~~p~~ 246 (569)
...+...+ . .... .......+..++|.|.|+|||||||.||||++||+|+++++........ .+++|++++.+|+.
T Consensus 167 ~~~~~~~~-~-~~~~-~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPla 243 (613)
T COG1022 167 PDEGISLF-L-IDSA-GLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLA 243 (613)
T ss_pred ccccchhh-h-hccc-ccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHH
Confidence 01111111 1 1111 1111124578899999999999999999999999999999999999997 99999999999999
Q ss_pred chhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCC----C------------------
Q 008342 247 HGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE----D------------------ 304 (569)
Q Consensus 247 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~----~------------------ 304 (569)
|++...+.....+.++ ..+....++..+++.+++++||+++++|.+|+.+.+.... .
T Consensus 244 Hi~Er~~~~~~~~~~g-~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~ 322 (613)
T COG1022 244 HIFERAFEGGLALYGG-VTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKK 322 (613)
T ss_pred HHHHHHHHHHHHhhcc-eEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 9999987544444443 4444456889999999999999999999999887654110 0
Q ss_pred -------------------------CCCCcccceeeeecCCCCCHHHHHHhhhcCCeEecccccccCCCCccccccCCCC
Q 008342 305 -------------------------TILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW 359 (569)
Q Consensus 305 -------------------------~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~ 359 (569)
....-.++|.+++||+++++++...++..|++++++||+||+++.++++.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~lGi~i~eGYGlTEts~~~~v~~~~--- 399 (613)
T COG1022 323 ISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPPD--- 399 (613)
T ss_pred HHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHcCCCeEEEecccccccceEEcccc---
Confidence 0010237899999999999999999999999999999999999988887532
Q ss_pred CCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhc-CCeeecCcee
Q 008342 360 DSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLA 438 (569)
Q Consensus 360 ~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~ 438 (569)
....+++|.|+|++ +++|.| .|||+|+||++|.|||++|+.|.+.|. |||++|||+|
T Consensus 400 --------~~~~gtvG~p~p~~-evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg 457 (613)
T COG1022 400 --------RFVLGTVGKPLPGI-EVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLG 457 (613)
T ss_pred --------CcccCCcCCcCCCc-eEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCcee
Confidence 23448999999999 699998 299999999999999999999999997 9999999999
Q ss_pred EEcCCCeEEEecccCceEE-eCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchh---------
Q 008342 439 VKHPDNYIEIKDRLKDVII-SGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADEL--------- 508 (569)
Q Consensus 439 ~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~--------- 508 (569)
.++++|+|+++||.+|+|+ .+|++|.|+.||..+.++|.|.+.+|++..++ .+.++|++..+.-..
T Consensus 458 ~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~k~----~~~AlIvp~~~~l~~~a~~~~~~~ 533 (613)
T COG1022 458 ELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKK----FLVALIVPDFDALEKWAESLNKVI 533 (613)
T ss_pred EEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEecCCc----ceEEEEeCCHHHHHHHHHhccccc
Confidence 9999999999999999999 89999999999999999999999999994444 388888877653220
Q ss_pred --hh------hhHHHHHHHHHHh---cCCCCcCCceEEecc--CC-----CCCCCcccHHHHHHHHHhcC
Q 008342 509 --DK------GKLAEDVSKFCRA---KMPSYWVPKSVVFAA--LP-----KSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 509 --~~------~~~~~~l~~~~~~---~l~~~~~p~~i~~~~--lP-----~t~~GKi~r~~l~~~~~~~~ 560 (569)
+. ....+.+...+.. ....+..+..+.+.. +. .|++=|++|+.+.+.+.+..
T Consensus 534 ~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i 603 (613)
T COG1022 534 SASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEI 603 (613)
T ss_pred cCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHH
Confidence 00 0111222222222 234445555555432 33 68999999999988877543
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-62 Score=517.23 Aligned_cols=503 Identities=27% Similarity=0.367 Sum_probs=406.7
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
++|+.++++++++++|+++|+.+.++.+||.||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 2 ~~~l~~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v 81 (533)
T PRK07798 2 AWNIADLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPV 81 (533)
T ss_pred cccHHHHHHHHHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
++++.++.+++.++++++++++++++......+.+.....+ ....++.+++..... ...+.++++++
T Consensus 82 ~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~~~~ 148 (533)
T PRK07798 82 NVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLP-------KLRTLVVVEDGSGND------LLPGAVDYEDA 148 (533)
T ss_pred ecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCC-------CccEEEEecCCcccc------cCCccccHHHH
Confidence 99999999999999999999999999876655554432222 344566665432111 11134567776
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH---------hCC------CCCcEEEEcC
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---------WGM------NEGAVFLWTL 243 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~---------~~~------~~~d~~~~~~ 243 (569)
+......... . ....+.++++|||||||.||+|+++|.++.......... +.+ ..+++++...
T Consensus 149 ~~~~~~~~~~-~-~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (533)
T PRK07798 149 LAAGSPERDF-G-ERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAP 226 (533)
T ss_pred HhccCCcCCC-C-CCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEec
Confidence 6553322111 1 223345789999999999999999999987654432211 112 5678999999
Q ss_pred CccchhhHHHHHHHHHhcceEEEec--cCChHHHHHHHHhcCccEEeehHHHHH-HHHccCC-CCCCCCcccceeeeecC
Q 008342 244 PMFHGNGWSYTWSLAALCGTSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLN-AIANASP-EDTILPLTNVVNVNTAG 319 (569)
Q Consensus 244 p~~~~~g~~~~~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~-~l~~~~~-~~~~~~l~~l~~~~~~g 319 (569)
|++|..++...+.++..|+++++.+ .+++..+++.++++++|.+.++|..+. .+..... ..... +++++.+++||
T Consensus 227 pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~-~~~l~~i~~gG 305 (533)
T PRK07798 227 PLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYD-LSSLFAIASGG 305 (533)
T ss_pred chhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCC-CCceEEEEECC
Confidence 9999999998888888899888887 789999999999999999999987654 3333322 22223 78999999999
Q ss_pred CCCCHHHHHHhhh-c-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCC--ceeeccCCceeeeCCCCccc
Q 008342 320 APPPPSLLFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQG--VRTICLDGLDVIDARTNQPV 395 (569)
Q Consensus 320 ~~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~~i~d~~~~~~~ 395 (569)
+++++++.+++.+ + +..+++.||+||++.+........ ....| .+.++. .++++|++ ++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-------------~~~~g~~~~~~~~-~~~i~~~~-~~~~ 370 (533)
T PRK07798 306 ALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKG-------------AVHTGGPRFTIGP-RTVVLDED-GNPV 370 (533)
T ss_pred CCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCCC-------------CccCCCCccCCCc-eEEEECCC-CCCC
Confidence 9999999999985 4 789999999999975544331110 01222 566677 69999987 7788
Q ss_pred CCCCCceEEEEEecCcccccccCCcchhhhhhc----CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHH
Q 008342 396 PADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA----NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKV 471 (569)
Q Consensus 396 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~ 471 (569)
+.|....|+++. ++.++.||++++..+...|. .+||+|||+++++++|.+++.||.||+++.+|.+|+|.+||.+
T Consensus 371 ~~g~~~~g~l~~-~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~ 449 (533)
T PRK07798 371 EPGSGEIGWIAR-RGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEA 449 (533)
T ss_pred CCCCCCeeEEEe-ecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHH
Confidence 877422377765 56789999999998888874 2599999999999999999999999999999999999999999
Q ss_pred HhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHH
Q 008342 472 LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKH 550 (569)
Q Consensus 472 l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~ 550 (569)
|.++|.|.+++|++.+++..++.+.+++++.++... ..++|.++++++|+.|++|..+++.+ ||+|++||++|+
T Consensus 450 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~ 524 (533)
T PRK07798 450 LKAHPDVADALVVGVPDERWGQEVVAVVQLREGARP-----DLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYR 524 (533)
T ss_pred HHhCccceeEEEEeccCcccCceEEEEEEECCCCCC-----CHHHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHH
Confidence 999999999999999888888889999888765433 56889999999999999999988776 999999999999
Q ss_pred HHHHHHHh
Q 008342 551 LLRAKAKE 558 (569)
Q Consensus 551 ~l~~~~~~ 558 (569)
.|+++.++
T Consensus 525 ~~~~~~~~ 532 (533)
T PRK07798 525 WAKEQAAE 532 (533)
T ss_pred HHhhhhcc
Confidence 99998875
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-62 Score=512.63 Aligned_cols=482 Identities=25% Similarity=0.372 Sum_probs=386.6
Q ss_pred HhhhhCCCceeeeeC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCC
Q 008342 28 RAATLHPTRKSVVYG--SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 105 (569)
Q Consensus 28 ~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~ 105 (569)
.+|..+|+++|+.+. ++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++++++.++
T Consensus 5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~ 84 (501)
T PRK13390 5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT 84 (501)
T ss_pred hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence 467789999999874 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhhcCCCC
Q 008342 106 ATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE 185 (569)
Q Consensus 106 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 185 (569)
.+++.++++++++++++++............ .....+.+.... .....+++......+.
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 143 (501)
T PRK13390 85 APEADYIVGDSGARVLVASAALDGLAAKVGA----------DLPLRLSFGGEI-----------DGFGSFEAALAGAGPR 143 (501)
T ss_pred HHHHHHHHHhcCCcEEEEcchhhhHHHHhhh----------ccceEEEecCcc-----------cccccHHHHhcccCCC
Confidence 9999999999999999998754332221100 011122222110 0112233332221111
Q ss_pred CCCCCCCCcCceEEEEeccCCCCCCcceee--cchHHHHHH----HHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHH
Q 008342 186 FAWKPPEDEWQSIALGYTSGTTASPKGVVV--SHRGAYLMS----LNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 259 (569)
Q Consensus 186 ~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~--t~~~~~~~~----~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~ 259 (569)
.....+.++|+|||||||.||+|.+ +|.++.... ......+.+..++++++.+|++|.+++...+..+.
T Consensus 144 -----~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~ 218 (501)
T PRK13390 144 -----LTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHA 218 (501)
T ss_pred -----CCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHh
Confidence 1122357999999999999999996 454443321 11233567889999999999999998866555566
Q ss_pred hcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCcccceeeeecCCCCCHHHHHHhhh-cCCe
Q 008342 260 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFR 336 (569)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~~~~ 336 (569)
.|+++++.+.+++..+++.|+++++|++.++|+++..+.+.... .... ++++|.++.+|+++++++.+.+.+ ++.+
T Consensus 219 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~l~~v~~~g~~~~~~~~~~~~~~~~~~ 297 (501)
T PRK13390 219 LGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYD-VSSLRAVIHAAAPCPVDVKHAMIDWLGPI 297 (501)
T ss_pred cCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCC-hhhhheEEEcCCCCCHHHHHHHHHhcCCc
Confidence 78888777788999999999999999999999999998865432 1222 678999999999999999999885 4889
Q ss_pred EecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccc
Q 008342 337 ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY 416 (569)
Q Consensus 337 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy 416 (569)
+++.||+||+++++.... . ......+++|.|.++ . ++|+|++ +++++.| +.|||+++|++++.||
T Consensus 298 ~~~~YG~tE~~~~~~~~~--~--------~~~~~~~~~G~~~~g-~-~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gy 362 (501)
T PRK13390 298 VYEYYSSTEAHGMTFIDS--P--------DWLAHPGSVGRSVLG-D-LHICDDD-GNELPAG--RIGTVYFERDRLPFRY 362 (501)
T ss_pred eeeeecccccCceEEecc--h--------hhccCCCCcCCcccc-e-EEEECCC-CCCCCCC--CceEEEEecCCccccc
Confidence 999999999986543221 1 111234678999988 3 8999865 8888887 8999999999999999
Q ss_pred cCCcchhhhhhc---CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCc
Q 008342 417 LKNPKANEEAFA---NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493 (569)
Q Consensus 417 ~~~~~~~~~~~~---~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~ 493 (569)
+++++.+...|. ++|++|||+|+++++|.+++.||.||+|+++|.+|+|.+||++|.++|.|.+++|++.+++..++
T Consensus 363 ~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e 442 (501)
T PRK13390 363 LNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGE 442 (501)
T ss_pred cCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCc
Confidence 999999888774 57999999999999999999999999999999999999999999999999999999999998899
Q ss_pred eeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHH
Q 008342 494 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLR 553 (569)
Q Consensus 494 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (569)
.+.+++++..+.... ....+++.++++++|+.|++|..+++++ ||+|++||++|++|+
T Consensus 443 ~~~~~v~~~~~~~~~--~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 443 QVKAVIQLVEGIRGS--DELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred eeEEEEEecCCCCcc--hhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 999998877653221 1245789999999999999999999777 999999999999874
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-63 Score=527.42 Aligned_cols=507 Identities=17% Similarity=0.158 Sum_probs=387.1
Q ss_pred ccccccccccCHHHHHHHhhhhCCCceeeeeCC-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHH
Q 008342 11 PKISANYTALTPLWFINRAATLHPTRKSVVYGS-----KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYE 85 (569)
Q Consensus 11 ~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~-----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~ 85 (569)
+.......+.++.++|++++..+|+++|+++.+ +++||+||.++++++|++|.+.|+++||+|+++++|++++++
T Consensus 30 ~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~ 109 (614)
T PRK08180 30 SAEPLGDYPRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHAL 109 (614)
T ss_pred cCCCCCCcCccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHH
Confidence 334445567799999999999999999998752 689999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCceEeeccccCC-----HHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcc
Q 008342 86 AQFGAPMAGAVLNSINIRLN-----ATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCD 160 (569)
Q Consensus 86 ~~lA~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 160 (569)
++|||+++|++++|+++.++ .+++.+++++++++++|++.... .......... ....++.......
T Consensus 110 ~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~--~~~~~~~~~~------~~~~~i~~~~~~~- 180 (614)
T PRK08180 110 LALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA--FARALAAVVP------ADVEVVAVRGAVP- 180 (614)
T ss_pred HHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHH--HHHHHhhhcc------CCceEEEecCCCC-
Confidence 99999999999999999998 79999999999999999986421 1111111110 1122333322110
Q ss_pred hhhhHHhhhcchhhHHhhhhcCCCCC--CCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCC--CC
Q 008342 161 SKQLEYALARGAIEYEKFLETGDPEF--AWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMN--EG 236 (569)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~--~~ 236 (569)
......|.+++....... .......++++++|+|||||||.||+|.+||+++..........+++. .+
T Consensus 181 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~ 252 (614)
T PRK08180 181 --------GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEP 252 (614)
T ss_pred --------CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCC
Confidence 011245566554322111 111224578999999999999999999999999988887766666653 56
Q ss_pred cEEEEcCCccchhhHHHHHH-HHHhcceEEEec-cCCh---HHHHHHHHhcCccEEeehHHHHHHHHccCCCC---CCCC
Q 008342 237 AVFLWTLPMFHGNGWSYTWS-LAALCGTSICLR-QVTA---KAVYTAIATHGVTHFCAAPVVLNAIANASPED---TILP 308 (569)
Q Consensus 237 d~~~~~~p~~~~~g~~~~~~-~~~~g~~~~~~~-~~~~---~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~---~~~~ 308 (569)
+++++.+|++|.+|+...+. ++..|+++++.+ .+++ .++++.++++++|+++++|.++..|++..... ....
T Consensus 253 ~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~ 332 (614)
T PRK08180 253 PVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRF 332 (614)
T ss_pred cEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhh
Confidence 89999999999999865444 455666666654 2443 46788899999999999999999988753221 1112
Q ss_pred cccceeeeecCCCCCHHHHHHhhhc-------CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeecc
Q 008342 309 LTNVVNVNTAGAPPPPSLLFAMSQK-------GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICL 381 (569)
Q Consensus 309 l~~l~~~~~~g~~l~~~~~~~~~~~-------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 381 (569)
++++|.+++||+++++++.+++.+. ++++++.||+||++++++.+... ....+++|.|++++
T Consensus 333 ~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~ 401 (614)
T PRK08180 333 FSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGP-----------LSRAGNIGLPAPGC 401 (614)
T ss_pred ccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccc-----------cCCCCcccCccCCc
Confidence 6899999999999999999888752 37899999999998766543211 12347899999999
Q ss_pred CCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhc-CCeeecCceeEE----cCCCeEEEecccCceE
Q 008342 382 DGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVK----HPDNYIEIKDRLKDVI 456 (569)
Q Consensus 382 ~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~~----~~~g~l~~~GR~~d~i 456 (569)
+++++|+. ..|||+++|++++.|||++++.+...|. +|||+|||+|++ +++|+++|+||.+|+|
T Consensus 402 -~v~i~d~~----------~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i 470 (614)
T PRK08180 402 -EVKLVPVG----------GKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDF 470 (614)
T ss_pred -EEEEecCC----------CCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhE
Confidence 69998753 4699999999999999999999998884 899999999999 4679999999999988
Q ss_pred E-eCceeec--hHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcch----------hhhhhHHHHHHHHHHh
Q 008342 457 I-SGGENIS--SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE----------LDKGKLAEDVSKFCRA 523 (569)
Q Consensus 457 ~-~~G~~v~--~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~----------~~~~~~~~~l~~~~~~ 523 (569)
+ .+|++++ +.|+|.++.+||.|.+++|++.+++. +.++|++.++... .......++|.+++++
T Consensus 471 ~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~~----~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 546 (614)
T PRK08180 471 KLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRDE----IGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRE 546 (614)
T ss_pred EcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCCc----eEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHH
Confidence 8 6898777 77888999999999999999987764 7788887654210 0000123456666666
Q ss_pred cCCCCc--------CCceEEecc-CCC------CCCCcccHHHHHHHHHhcC
Q 008342 524 KMPSYW--------VPKSVVFAA-LPK------SATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 524 ~l~~~~--------~p~~i~~~~-lP~------t~~GKi~r~~l~~~~~~~~ 560 (569)
.|..+. +|..+.+.+ +|+ |++||+.|+++.+.|.++-
T Consensus 547 ~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i 598 (614)
T PRK08180 547 RLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALV 598 (614)
T ss_pred HHHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHH
Confidence 665555 899988776 886 4566889999998888653
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-63 Score=612.53 Aligned_cols=495 Identities=23% Similarity=0.282 Sum_probs=415.3
Q ss_pred ccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 17 YTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 17 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
..+.++.++|+++++++|+++|+++.++++||+||+++++++|+.|.+.|+++|++|++++++++++++++|||+++|++
T Consensus 509 ~~~~~~~~~~~~~a~~~pd~~Al~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lail~aG~~ 588 (3956)
T PRK12467 509 YAPDCVHQLIEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGA 588 (3956)
T ss_pred CCCCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHH
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYE 176 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (569)
++|++|.++.+++.++++++++++++++++....+.. . ....++.+.....
T Consensus 589 ~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~-------~~~~~~~~~~~~~----------------- 639 (3956)
T PRK12467 589 YVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPV-----P-------AGLRSLCLDEPAD----------------- 639 (3956)
T ss_pred EeccCCCChHHHHHHHHHhcCCCEEEechhhhhhccc-----c-------cCccEEEeccccc-----------------
Confidence 9999999999999999999999999998743221110 0 1112222222110
Q ss_pred hhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHH
Q 008342 177 KFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWS 256 (569)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~ 256 (569)
.+... ..........++++++|+|||||||.||||+++|+++.+...+....+++.++|+++...|++|..++...+.
T Consensus 640 -~~~~~-~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 717 (3956)
T PRK12467 640 -LLCGY-SGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELFG 717 (3956)
T ss_pred -ccccc-CCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHHHHH
Confidence 00001 1111112346789999999999999999999999999999998888899999999999999999999988888
Q ss_pred HHHhcceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc
Q 008342 257 LAALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK 333 (569)
Q Consensus 257 ~~~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~ 333 (569)
++..|+++++.+. +++..+++.|+++++|++.++|+++..+.+...... ..++|.+++|||++++++.++|.+.
T Consensus 718 ~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~---~~~lr~i~~gGe~l~~~~~~~~~~~ 794 (3956)
T PRK12467 718 ALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVAL---PRPQRALVCGGEALQVDLLARVRAL 794 (3956)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhcccc---CCcccEEEEEeecCCHHHHHHHHHh
Confidence 8889999888753 689999999999999999999999999987543222 5678999999999999999999865
Q ss_pred --CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCc
Q 008342 334 --GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC 411 (569)
Q Consensus 334 --~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 411 (569)
+++++|.||+||++..++.+...... ......++|.|++++ +++|+|++ ++++|.| +.|||+|+|+.
T Consensus 795 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~-------~~~~~~~iG~p~~~~-~~~i~d~~-~~~vp~G--~~GEL~i~G~~ 863 (3956)
T PRK12467 795 GPGARLINHYGPTETTVGVSTYELSDEE-------RDFGNVPIGQPLANL-GLYILDHY-LNPVPVG--VVGELYIGGAG 863 (3956)
T ss_pred CCCCEEEeCcCCChhhhheeeEeccccc-------ccCCCCcccCCcCCC-EEEEECCC-CCCCCCC--CceEEEecccc
Confidence 68999999999998776654322110 001125799999999 69999986 8999988 89999999999
Q ss_pred ccccccCCcchhhhhhc--------CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEE
Q 008342 412 VMKGYLKNPKANEEAFA--------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483 (569)
Q Consensus 412 ~~~gy~~~~~~~~~~~~--------~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 483 (569)
+++||+++++.+.++|. .+||+|||+|++++||.++++||.||+||++|++|+|.+||+.|.++|+|.+++|
T Consensus 864 v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~vki~G~rI~~~eIE~~L~~~p~V~~a~v 943 (3956)
T PRK12467 864 LARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVV 943 (3956)
T ss_pred cchhhcCCccccHhhCcCCCCCCCCceeEecCceeEEcCCCcEEEeccccCeEEECCEecCHHHHHHHHHhCCCcceEEE
Confidence 99999999999999883 2399999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHH
Q 008342 484 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK 557 (569)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~ 557 (569)
++.++. .++.++++++..............++|++++++.||.|++|..+++.+ ||+|++||++|++|++...
T Consensus 944 ~~~~~~-~~~~lva~vv~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~ 1017 (3956)
T PRK12467 944 LAQPGD-AGLQLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNGKLDRKALPKPDA 1017 (3956)
T ss_pred EEEcCC-CCcEEEEEEEecccccccccccCHHHHHHHHHhhCchhcCCceEeeecccCCCCCCCcCHhhcCCccc
Confidence 986544 467789998865433222222356889999999999999999998777 9999999999999987543
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-62 Score=513.56 Aligned_cols=491 Identities=22% Similarity=0.266 Sum_probs=407.7
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEee
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNS 99 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 99 (569)
|++.++|++++..+|+++++.+.++++||.||.+++.++|.+|.+.|+++|++|+++++|+.+++++++||+++|+++++
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~ 81 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIP 81 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEec
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhh
Q 008342 100 INIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFL 179 (569)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (569)
+++.++.+++.++++..++++++++.+..... .....+...+ +.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~------------------~~~~~ 128 (503)
T PRK04813 82 VDVSSPAERIEMIIEVAKPSLIIATEELPLEI---------------LGIPVITLDE------------------LKDIF 128 (503)
T ss_pred CCCCChHHHHHHHHHhcCCCEEEecccccccc---------------cCCcEEehHH------------------hhhhh
Confidence 99999999999999999999999987641100 0111111110 11111
Q ss_pred hcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHH
Q 008342 180 ETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 259 (569)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~ 259 (569)
.. ...........++++++++|||||||.||+|.++|+++.....+....+++..+++++...|++|..++...+..+.
T Consensus 129 ~~-~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~ 207 (503)
T PRK04813 129 AT-GNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLA 207 (503)
T ss_pred hc-cccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHh
Confidence 10 11111122346678999999999999999999999999988887777888999999999999999999887777778
Q ss_pred hcceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-c-C
Q 008342 260 LCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K-G 334 (569)
Q Consensus 260 ~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~-~ 334 (569)
.|++++..+. .++..+++.++++++|++..+|++++.+.......... +++++.++++|+++++.+.+++.+ + +
T Consensus 208 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~-~~~l~~i~~~G~~l~~~~~~~~~~~~~~ 286 (503)
T PRK04813 208 SGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEH-LPNLTHFLFCGEELPHKTAKKLLERFPS 286 (503)
T ss_pred cCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCccc-CCCceEEEEecCcCCHHHHHHHHHHCCC
Confidence 8888887754 57899999999999999999999998876654333333 789999999999999999999885 4 7
Q ss_pred CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccc
Q 008342 335 FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK 414 (569)
Q Consensus 335 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 414 (569)
+++++.||+||++..++.....+.. .......++|.+.+++ +++|+|++ +.+++.+ +.|||+++|++++.
T Consensus 287 ~~~~~~yG~tE~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~ 356 (503)
T PRK04813 287 ATIYNTYGPTEATVAVTSIEITDEM------LDQYKRLPIGYAKPDS-PLLIIDEE-GTKLPDG--EQGEIVISGPSVSK 356 (503)
T ss_pred ceEEeCcccchheeEEEEEEecccc------cccCCCCcccccCCCC-EEEEECCC-CCCCCCC--CceEEEEecccccc
Confidence 8999999999997655433221110 1112235789999999 69999975 8888877 78999999999999
Q ss_pred cccCCcchhhhhhc--C--CeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCC
Q 008342 415 GYLKNPKANEEAFA--N--GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 490 (569)
Q Consensus 415 gy~~~~~~~~~~~~--~--g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 490 (569)
||++++..+...|. + +||+|||++++ ++|.+++.||.+|+|+.+|.++++.+||+++.++|+|.+++|++.++..
T Consensus 357 gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 435 (503)
T PRK04813 357 GYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDH 435 (503)
T ss_pred ccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCC
Confidence 99999998888773 3 49999999999 8999999999999999999999999999999999999999999987776
Q ss_pred CCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHH
Q 008342 491 WGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK 557 (569)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~ 557 (569)
.++.++++++..++... ......+++.++++++++.+++|..+.+++ ||+|++||++|++|++.++
T Consensus 436 ~~~~~~~~v~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 436 KVQYLIAYVVPKEEDFE-REFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVN 502 (503)
T ss_pred CccEEEEEEEecccccc-ccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhc
Confidence 67888888887764221 112255789999999999999999999877 9999999999999998875
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-63 Score=620.35 Aligned_cols=483 Identities=21% Similarity=0.253 Sum_probs=412.9
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
+.++.++|+++++++|+++|+++.++++||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++
T Consensus 510 ~~~~~~~~~~~a~~~p~~~A~~~~~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~v 589 (5163)
T PRK12316 510 QRGVHRLFEEQVERTPEAPALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYV 589 (5163)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEe
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
|++|.++.+++.+++++++++++|++......+.. . ....++.++.... +
T Consensus 590 pld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~----~--------~~~~~~~~~~~~~------------------~ 639 (5163)
T PRK12316 590 PLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL----A--------AGVQVLDLDRPAA------------------W 639 (5163)
T ss_pred ccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc----c--------cCceEEEecCcch------------------h
Confidence 99999999999999999999999998764322110 0 1122333332110 0
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
+... ..........++++++|+|||||||.||||+++|+++.+...+....++++++|+++...|++|..++...+.++
T Consensus 640 ~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L 718 (5163)
T PRK12316 640 LEGY-SEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPL 718 (5163)
T ss_pred hccC-CCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHH
Confidence 1111 111111234678999999999999999999999999999999988999999999999999999999998888888
Q ss_pred HhcceEEEec---cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-c-
Q 008342 259 ALCGTSICLR---QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K- 333 (569)
Q Consensus 259 ~~g~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~- 333 (569)
+.|+++++.+ .+++..+++.++++++|++.++|++++.|.+..... . ++++|.+++||+++++++.+++.+ .
T Consensus 719 ~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~-~~~l~~~~~gGe~l~~~~~~~~~~~~~ 795 (5163)
T PRK12316 719 MSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA--S-CTSLRRIVCSGEALPADAQEQVFAKLP 795 (5163)
T ss_pred hCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccccc--c-CCCccEEEEeeccCCHHHHHHHHHhCC
Confidence 8899988874 378999999999999999999999999998653322 2 789999999999999999999864 3
Q ss_pred CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccc
Q 008342 334 GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVM 413 (569)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 413 (569)
+++++|.||+||++..++...... ......++|.|++++ +++|+|++ ++++|.| +.|||+|+|++++
T Consensus 796 ~~~l~n~YG~TE~~~~~~~~~~~~---------~~~~~~~iG~p~~~~-~~~i~d~~-~~~~p~G--~~GEl~i~G~~v~ 862 (5163)
T PRK12316 796 QAGLYNLYGPTEAAIDVTHWTCVE---------EGGDSVPIGRPIANL-ACYILDAN-LEPVPVG--VLGELYLAGRGLA 862 (5163)
T ss_pred CCeEEeCcCcChheeeeeEEeccc---------ccCCCCCCccccCCC-EEEEECCC-CCCCCCC--CceEEEecccccC
Confidence 789999999999986554332111 112236799999999 69999986 8999988 8999999999999
Q ss_pred ccccCCcchhhhhhc-------CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEee
Q 008342 414 KGYLKNPKANEEAFA-------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 486 (569)
Q Consensus 414 ~gy~~~~~~~~~~~~-------~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 486 (569)
.||+++++.+.+.|. ++||+|||+|++++||.++++||.||+||++|++|+|.|||++|.+||.|.+|+|++.
T Consensus 863 ~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~ 942 (5163)
T PRK12316 863 RGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAV 942 (5163)
T ss_pred hhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEc
Confidence 999999999998883 3599999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHH
Q 008342 487 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK 557 (569)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~ 557 (569)
+ ++.++++|+..++... ..+.++++++++||.|++|+.+++++ ||+|++||++|++|.+...
T Consensus 943 ~----~~~lva~vv~~~~~~~-----~~~~l~~~l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316 943 D----GKQLVGYVVLESEGGD-----WREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred C----CCeEEEEEEccCCCCC-----CHHHHHHHHHhhCCCccCCCeEEEHhhCCCCCCCChhHHhhcCccc
Confidence 6 5679999998765433 45789999999999999999999877 9999999999999986543
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=530.61 Aligned_cols=511 Identities=18% Similarity=0.259 Sum_probs=385.0
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeC---------------------------CeeeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYG---------------------------SKHYTWHQTYRRCRRFASALSKLSIGLGT 71 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~---------------------------~~~~Ty~el~~~~~~la~~L~~~g~~~g~ 71 (569)
..|+.++|.++++++|+++|+.+. .+.+||+||.++++++|++|.++|+++||
T Consensus 68 ~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd 147 (700)
T PTZ00216 68 GPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGS 147 (700)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 458999999999999999999873 37899999999999999999999999999
Q ss_pred EEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeE
Q 008342 72 TVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHL 151 (569)
Q Consensus 72 ~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (569)
+|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+........ .....+
T Consensus 148 ~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~------~~~~~i 221 (700)
T PTZ00216 148 NVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGG------MPNTTI 221 (700)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhcc------CCceEE
Confidence 99999999999999999999999999999999999999999999999999998765444333222110 012345
Q ss_pred EEecCCCcchhhhHHhhhcchhhHHhhhhcCC---CCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhH
Q 008342 152 IVIGDESCDSKQLEYALARGAIEYEKFLETGD---PEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA 228 (569)
Q Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~ 228 (569)
+.+++..... ........+|++++.... ...+...+..++++++|+|||||||.||||++||+++++......
T Consensus 222 i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~ 297 (700)
T PTZ00216 222 IYLDSLPASV----DTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALE 297 (700)
T ss_pred EEECCCcccc----ccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHH
Confidence 5554321110 001123456777765541 111122334678999999999999999999999999988876655
Q ss_pred hHh----C-CCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEeccCChHHHHH-------HHHhcCccEEeehHHHHHH
Q 008342 229 LIW----G-MNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYT-------AIATHGVTHFCAAPVVLNA 296 (569)
Q Consensus 229 ~~~----~-~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~i~~~~~t~l~~~P~~~~~ 296 (569)
..+ + +.++|++++.+|++|.+++......+ .+|+.+.+. ++..+.+ .+++++||++.++|.+++.
T Consensus 298 ~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l-~~G~~v~~~--~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~ 374 (700)
T PTZ00216 298 DRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFL-ARGALIGFG--SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDT 374 (700)
T ss_pred hhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHH-HcCCEEEEC--CHHHhhhhhccccchHHHcCCcEEEechHHHHH
Confidence 433 2 46889999999999999986555444 444444442 3445544 6889999999999999988
Q ss_pred HHccCCCC-------------------------C-C--------------CCcccceeeeecCCCCCHHHHHHhhhc-CC
Q 008342 297 IANASPED-------------------------T-I--------------LPLTNVVNVNTAGAPPPPSLLFAMSQK-GF 335 (569)
Q Consensus 297 l~~~~~~~-------------------------~-~--------------~~l~~l~~~~~~g~~l~~~~~~~~~~~-~~ 335 (569)
+.+..... . . ...+++|.+++||+++++++.++++.. +
T Consensus 375 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~- 453 (700)
T PTZ00216 375 IKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG- 453 (700)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-
Confidence 76431100 0 0 001579999999999999998877754 6
Q ss_pred eEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcc-cCCCCCceEEEEEecCcccc
Q 008342 336 RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQP-VPADGKTIGEIVMRGSCVMK 414 (569)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~-~~~~~~~~Gel~v~~~~~~~ 414 (569)
++++.||+||+++.++..... ....+++|.|++++ +++|+|.++... .+.+ ..|||+++|++++.
T Consensus 454 ~l~~~YG~TEt~~~~~~~~~~-----------~~~~~svG~p~~g~-evkI~d~~~~~~~~~~~--~~GEL~vrG~~v~~ 519 (700)
T PTZ00216 454 MVIQGWGLTETVCCGGIQRTG-----------DLEPNAVGQLLKGV-EMKLLDTEEYKHTDTPE--PRGEILLRGPFLFK 519 (700)
T ss_pred hHhhccCcccccccccccCCC-----------CCCCCCcCCcCCCe-EEEEeechhhccCCCCC--CCceEEEcCCcccc
Confidence 999999999998655443211 12247899999999 699999864221 2222 46999999999999
Q ss_pred cccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEE-eCceeechHHHHHHHhcCCCceee--EEEeecCCC
Q 008342 415 GYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVEVEKVLYLHPLVLEA--AVVARPDER 490 (569)
Q Consensus 415 gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~--~v~~~~~~~ 490 (569)
|||++++.+.+.| .+|||+|||+|++++||+++|+||.||+|| .+|++|.|.+||.+|.+||.|.++ +|++.++.
T Consensus 520 GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~- 598 (700)
T PTZ00216 520 GYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPAR- 598 (700)
T ss_pred hhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCC-
Confidence 9999999999999 589999999999999999999999999998 999999999999999999999973 34443322
Q ss_pred CCceeeEEEEecCCcch---------------hhhhhHHHHHHHHH-----HhcCCCCcCCceEEecc--C-C----CCC
Q 008342 491 WGESPCAFVTLKPEADE---------------LDKGKLAEDVSKFC-----RAKMPSYWVPKSVVFAA--L-P----KSA 543 (569)
Q Consensus 491 ~g~~~~~~v~~~~~~~~---------------~~~~~~~~~l~~~~-----~~~l~~~~~p~~i~~~~--l-P----~t~ 543 (569)
..+++++++...... .+.....+.+.+.+ ++.+..|.+++.+.+.. + + +|+
T Consensus 599 --~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~ 676 (700)
T PTZ00216 599 --SYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTA 676 (700)
T ss_pred --ceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCCh
Confidence 357888876532100 00011222333322 23588899999888654 2 2 599
Q ss_pred CCcccHHHHHHHHHhcC
Q 008342 544 TGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 544 ~GKi~r~~l~~~~~~~~ 560 (569)
++|++|+.+++.|.+.-
T Consensus 677 t~K~~R~~i~~~y~~~i 693 (700)
T PTZ00216 677 AMKLKRRVIDERYADLI 693 (700)
T ss_pred hhccchHHHHHHHHHHH
Confidence 99999999999998753
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-61 Score=513.41 Aligned_cols=511 Identities=24% Similarity=0.350 Sum_probs=408.1
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSK-LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
.++.++|+++++++|+++|+.+.++++||.||.++++++|.+|.+ .|+++|++|+++++|++++++++|||+++|++++
T Consensus 23 ~~l~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 102 (560)
T PRK08974 23 QSLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVV 102 (560)
T ss_pred ccHHHHHHHHHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEe
Confidence 479999999999999999999999999999999999999999984 8999999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCc--chhh--h----------
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESC--DSKQ--L---------- 164 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~--~---------- 164 (569)
|++|.++.+++.++++.+++++++++++....+..+..... ...++....... .... .
T Consensus 103 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (560)
T PRK08974 103 NVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTP--------VKHVILTRMGDQLSTAKGTLVNFVVKYIKRL 174 (560)
T ss_pred ccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcC--------cceEEEecccccccccccccccchhhhcccc
Confidence 99999999999999999999999998876555544332211 111111110000 0000 0
Q ss_pred -HHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhC---CCCCcEEE
Q 008342 165 -EYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG---MNEGAVFL 240 (569)
Q Consensus 165 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~---~~~~d~~~ 240 (569)
+....+....+.+.+...............+++++++|||||||.||+|.++|.++..+.......+. ...++.++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~ 254 (560)
T PRK08974 175 VPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVV 254 (560)
T ss_pred cccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEE
Confidence 00000111222222222211111112245789999999999999999999999999876654433332 34567788
Q ss_pred EcCCccchhhHHH-HHHHHHhcceEEEe-ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeec
Q 008342 241 WTLPMFHGNGWSY-TWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTA 318 (569)
Q Consensus 241 ~~~p~~~~~g~~~-~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~ 318 (569)
..+|++|.+++.. .+..+..|++.++. ...++..+++.++++++|.+.++|+++..+.......... ++++|.+++|
T Consensus 255 ~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~g 333 (560)
T PRK08974 255 TALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELD-FSSLKLSVGG 333 (560)
T ss_pred EeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCC-ccceeEEEec
Confidence 8999999998754 33444566666665 3467889999999999999999999999998765444333 7899999999
Q ss_pred CCCCCHHHHHHhhhc-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCC
Q 008342 319 GAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPA 397 (569)
Q Consensus 319 g~~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~ 397 (569)
|+++++.+.++|++. |+++++.||+||++..++.+.... ....+++|.|.+++ .++++|++ +++++.
T Consensus 334 g~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~i~~~~-~~~~~~ 401 (560)
T PRK08974 334 GMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDL----------DYYSGSIGLPVPST-EIKLVDDD-GNEVPP 401 (560)
T ss_pred CccCCHHHHHHHHHHhCCcEEeeecccccCceeeccCCCC----------cccCCccccCcCCC-EEEEECCC-CCCCCC
Confidence 999999999998864 899999999999987766553221 12236789999999 69999975 888888
Q ss_pred CCCceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCC
Q 008342 398 DGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPL 477 (569)
Q Consensus 398 ~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 477 (569)
| +.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.++++||.+|+|+++|.+++|.+||..|.+++.
T Consensus 402 g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~ 479 (560)
T PRK08974 402 G--EPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPK 479 (560)
T ss_pred C--CceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCC
Confidence 7 78999999999999999999999888989999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHH
Q 008342 478 VLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA 556 (569)
Q Consensus 478 v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (569)
|.+++|++.++...|+.+.++++..+.. . ..+++.+++.++++.+.+|..+.+++ ||+|++||++|+.|++..
T Consensus 480 v~~~~v~~~~~~~~g~~~~~~v~~~~~~-~-----~~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~ 553 (560)
T PRK08974 480 VLEVAAVGVPSEVSGEAVKIFVVKKDPS-L-----TEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEA 553 (560)
T ss_pred eeEEEEEeeecCCcceEEEEEEECCCCC-C-----CHHHHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHHH
Confidence 9999999999888888788877654322 2 34678999999999999999999776 999999999999999877
Q ss_pred Hhc
Q 008342 557 KEM 559 (569)
Q Consensus 557 ~~~ 559 (569)
.+.
T Consensus 554 ~~~ 556 (560)
T PRK08974 554 RAK 556 (560)
T ss_pred Hhh
Confidence 654
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=509.57 Aligned_cols=454 Identities=27% Similarity=0.365 Sum_probs=381.1
Q ss_pred hhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHH
Q 008342 31 TLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVA 110 (569)
Q Consensus 31 ~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 110 (569)
...++++|++++++++||+||.++++++|..|. ++|+|+++++|+++++++++||+++|++++|+++.++.+++.
T Consensus 11 ~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~ 85 (471)
T PRK07787 11 AAADIADAVRIGGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERR 85 (471)
T ss_pred cccCCceEEEeCCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHHH
Confidence 457889999999999999999999999999996 479999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhhcCCCCCCCCC
Q 008342 111 FILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 190 (569)
Q Consensus 111 ~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (569)
.+++++++++++++.+... . ....+ .+.... ..+. ...
T Consensus 86 ~~l~~~~~~~il~~~~~~~---------~-------~~~~~-~~~~~~--------------~~~~-----------~~~ 123 (471)
T PRK07787 86 HILADSGAQAWLGPAPDDP---------A-------GLPHV-PVRLHA--------------RSWH-----------RYP 123 (471)
T ss_pred HHHHhcCCCEEEecCCccc---------c-------cccce-eeeccc--------------cccc-----------cCC
Confidence 9999999999999764110 0 00000 000000 0000 001
Q ss_pred CCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHH-HHhcceEEEecc
Q 008342 191 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSL-AALCGTSICLRQ 269 (569)
Q Consensus 191 ~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~-~~~g~~~~~~~~ 269 (569)
...++++++++|||||||.||+|.++|.++..........+++.++++++..+|++|.+|+...+.. +..|++++....
T Consensus 124 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 203 (471)
T PRK07787 124 EPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGR 203 (471)
T ss_pred CCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCC
Confidence 1356899999999999999999999999999988888888889999999999999999998765444 555666666677
Q ss_pred CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-cCCeEecccccccCCC
Q 008342 270 VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTELTG 348 (569)
Q Consensus 270 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~ 348 (569)
+++..+++.++ +++|++.++|+++..+.+..... .. ++++|.+++||+++++.+.+++.+ ++.++++.||+||++.
T Consensus 204 ~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~~-~~-l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~ 280 (471)
T PRK07787 204 PTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEAA-RA-LRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLI 280 (471)
T ss_pred CCHHHHHHHHh-hCceEEEcchHHHHHHHhCcccc-cc-ccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCc
Confidence 89999999999 99999999999999998754322 22 789999999999999999999885 5899999999999985
Q ss_pred CccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhc
Q 008342 349 PASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 428 (569)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~ 428 (569)
..+.... ......++|.|.+++ .++|+|++ +.+++..+++.|||+++|++++.||+++++.+...|.
T Consensus 281 ~~~~~~~-----------~~~~~~~vG~~~~g~-~~~i~d~~-~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~ 347 (471)
T PRK07787 281 TLSTRAD-----------GERRPGWVGLPLAGV-ETRLVDED-GGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFT 347 (471)
T ss_pred ceecCCC-----------CcccCCcccccCCCc-EEEEECCC-CCCCCCCCCCceEEEEECcccchhhcCChhhchhccc
Confidence 4333211 112236799999999 69999987 7888743335899999999999999999999988885
Q ss_pred -CCeeecCceeEEcCCCeEEEeccc-CceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcc
Q 008342 429 -NGWFHSGDLAVKHPDNYIEIKDRL-KDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEAD 506 (569)
Q Consensus 429 -~g~~~tGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~ 506 (569)
+|||+|||+|++++||.+++.||. ||+++.+|.+|+|.+||++|.+++.|.+++|++.++...++.++++++.....
T Consensus 348 ~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~- 426 (471)
T PRK07787 348 ADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDV- 426 (471)
T ss_pred CCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCC-
Confidence 899999999999999999999996 89999999999999999999999999999999999888889999998873322
Q ss_pred hhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHH
Q 008342 507 ELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 554 (569)
Q Consensus 507 ~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (569)
..+++.+++++.++++++|..+.+++ ||+|++||++|++|++
T Consensus 427 ------~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 427 ------AADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLS 469 (471)
T ss_pred ------CHHHHHHHHHhhcccccCCcEEEEeccCCCCCCccccHHHhcc
Confidence 45789999999999999999998777 9999999999999975
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-63 Score=619.37 Aligned_cols=488 Identities=21% Similarity=0.272 Sum_probs=413.2
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
+.++.++|+++++++|+++|+++.++++||+||+++++++|+.|.+.|+++|++|++++++++++++++|||+++|++++
T Consensus 2002 ~~~~~~~~~~~a~~~p~~~A~~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~v 2081 (5163)
T PRK12316 2002 GPGVHQRIAEQAARAPEAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYV 2081 (5163)
T ss_pred CCCHHHHHHHHHHhCCCCeEEEcCCCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEe
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
|++|.++.+++.++++++++++++++.+....+... .....+.+... ..+.
T Consensus 2082 pld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~------------~~~~~~~~~~~---------------~~~~-- 2132 (5163)
T PRK12316 2082 PLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP------------AGVARLPLDRD---------------AEWA-- 2132 (5163)
T ss_pred ecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc------------cccceEeccch---------------hhhh--
Confidence 999999999999999999999999987654322100 01111222110 0000
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
. .+.........++++++|+|||||||.||||+++|+++.+...+....++++++|+++...|++|..++...+.++
T Consensus 2133 --~-~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L 2209 (5163)
T PRK12316 2133 --D-YPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHPL 2209 (5163)
T ss_pred --c-cCccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHHHHHHHH
Confidence 0 0111111235678999999999999999999999999999999888899999999999999999998888888888
Q ss_pred HhcceEEEec--cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc--C
Q 008342 259 ALCGTSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--G 334 (569)
Q Consensus 259 ~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~--~ 334 (569)
+.|+++++.+ .+++..+++.|+++++|++.++|+++..+.+....... ..+||.+++|||++++++.++|.+. +
T Consensus 2210 ~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~~~lr~~~~gGe~l~~~~~~~~~~~~~~ 2287 (5163)
T PRK12316 2210 LNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGR--PPAVRVYCFGGEAVPAASLRLAWEALRP 2287 (5163)
T ss_pred hCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcccC--CcceeEEEEecccCCHHHHHHHHHhCCC
Confidence 8888886654 36889999999999999999999999999876543322 4589999999999999999999853 7
Q ss_pred CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccc
Q 008342 335 FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK 414 (569)
Q Consensus 335 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 414 (569)
.++++.||+||++..++....... ........++|.|++++ ++.|+|++ ++++|.| +.|||+|.|+++++
T Consensus 2288 ~~l~n~YG~TE~~~~~~~~~~~~~------~~~~~~~~~iG~p~~~~-~~~i~d~~-~~~vp~g--~~GEl~i~G~~v~~ 2357 (5163)
T PRK12316 2288 VYLFNGYGPTEAVVTPLLWKCRPQ------DPCGAAYVPIGRALGNR-RAYILDAD-LNLLAPG--MAGELYLGGEGLAR 2357 (5163)
T ss_pred cEEEECccchhheeeeeeeecccc------cccCCCcCCcccccCCC-EEEEECCC-CCCCCCC--CeeEEEecchhhcc
Confidence 899999999999866554322111 01111125799999999 69999986 8899988 89999999999999
Q ss_pred cccCCcchhhhhhc--------CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEee
Q 008342 415 GYLKNPKANEEAFA--------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 486 (569)
Q Consensus 415 gy~~~~~~~~~~~~--------~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 486 (569)
||+++++.+.+.|. .+||+|||+|++++||.++++||.||+||++|++|++.|||.+|.++|+|.+++|++.
T Consensus 2358 GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~ 2437 (5163)
T PRK12316 2358 GYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQ 2437 (5163)
T ss_pred cccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEE
Confidence 99999999999983 3599999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHH
Q 008342 487 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA 556 (569)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (569)
++. .++.++++++...+... ..+++++++++.||.|++|..+++.+ ||+|++||++|++|++..
T Consensus 2438 ~~~-~~~~l~a~v~~~~~~~~-----~~~~l~~~l~~~Lp~~~vP~~~~~l~~lP~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316 2438 DGA-SGKQLVAYVVPDDAAED-----LLAELRAWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred ecC-CCeEEEEEEEecCCCcc-----CHHHHHHHHHhhCchhcCcceEeeecccCCCCCCccCHhhcCCCc
Confidence 766 67889999998766533 56889999999999999999998777 999999999999997654
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=489.48 Aligned_cols=522 Identities=21% Similarity=0.221 Sum_probs=419.6
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCC--------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHH
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGS--------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQ 87 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~--------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~ 87 (569)
.....|+++.+.+.+..+|+.+++-... ..+||.|..+++.+++..|.++|+++++.|+|+.-|+++|+++.
T Consensus 71 ~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~ 150 (691)
T KOG1256|consen 71 FDGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISE 150 (691)
T ss_pred CCCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhH
Confidence 3468899999999999999999986543 67999999999999999999999999999999999999999999
Q ss_pred HHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEccc-chHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHH
Q 008342 88 FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQE-FFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEY 166 (569)
Q Consensus 88 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (569)
+||...|.+.||+..+++++.+.++++.+...++|++++ ....+.+..... ....++.+|.+++....-+..+.
T Consensus 151 ~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~-----~~~~LK~iI~~~~~~~~~~~~~~ 225 (691)
T KOG1256|consen 151 MACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKEND-----SLPSLKAIIQLDEPSDELKEKAE 225 (691)
T ss_pred HHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccc-----cCccceeEEEecCCchhhhhhhh
Confidence 999999999999999999999999999999999999954 333333322210 01157888888887655444444
Q ss_pred hhhcchhhHHhhhhcCCCCCCCC-CCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH------hCCCCCcEE
Q 008342 167 ALARGAIEYEKFLETGDPEFAWK-PPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI------WGMNEGAVF 239 (569)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~------~~~~~~d~~ 239 (569)
.......+|+++++-+....... .++.++|.+.|.|||||||.||||++||+|+.......... ......|++
T Consensus 226 ~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~ 305 (691)
T KOG1256|consen 226 NNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVY 305 (691)
T ss_pred cCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceE
Confidence 45556899999998886554444 47899999999999999999999999999998865432221 123347999
Q ss_pred EEcCCccchhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCC----C-----------
Q 008342 240 LWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE----D----------- 304 (569)
Q Consensus 240 ~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~----~----------- 304 (569)
++.+|+.|++...........|+++.+.. .|+..+.+.|++.+||++.++|.+|+++...... .
T Consensus 306 lSyLPLAHi~er~~~~~~~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A 384 (691)
T KOG1256|consen 306 LSYLPLAHIFERVVELYTFYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFA 384 (691)
T ss_pred EEeCcHHHHHHHHHHHhHhhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999988888887888877776 5888888889999999999999999887644211 0
Q ss_pred --------------C-CCC--------------cccceeeeecCCCCCHHHHHHhhhc-CCeEecccccccCCCCccccc
Q 008342 305 --------------T-ILP--------------LTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCA 354 (569)
Q Consensus 305 --------------~-~~~--------------l~~l~~~~~~g~~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~ 354 (569)
. ..+ -.++|.+++|++|+++++.+.++.. |++|+++||+||+.+.++...
T Consensus 385 ~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~ 464 (691)
T KOG1256|consen 385 MAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTL 464 (691)
T ss_pred HHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEecc
Confidence 0 000 3478899999999999999999955 899999999999996666544
Q ss_pred cCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhh-cCCeee
Q 008342 355 WKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFH 433 (569)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~ 433 (569)
..+. ..+++|.|+|++ +++++|.++-.--+.+ ..||||++|++++.||+++|+.|.+.+ .+||++
T Consensus 465 ~~d~-----------~lgsvG~p~p~~-~vKL~dvpe~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLh 530 (691)
T KOG1256|consen 465 PGDN-----------VLGSVGPPVPGN-EVKLVDVPEMNYDADG--SKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLH 530 (691)
T ss_pred CCCC-----------CCCCcCCcccCc-eEEEechHHhCcCcCC--CcceEEEecchhceeccCChHHHhhhhccccccc
Confidence 2221 348999999999 6999888866666666 469999999999999999999999999 799999
Q ss_pred cCceeEEcCCCeEEEecccCceEE-eCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhh--h
Q 008342 434 SGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELD--K 510 (569)
Q Consensus 434 tGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~--~ 510 (569)
|||+|+|+++|.+++.||.+++|| ..|++|.|..||++..+.+.|.+.+|.+..... .++++|++.++..... .
T Consensus 531 TGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~---~LvaiVvpd~e~~~~~a~~ 607 (691)
T KOG1256|consen 531 TGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRS---FLVAIVVPDPEVLKSWAAK 607 (691)
T ss_pred cccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchh---cEEEEEecChhhchhhHHH
Confidence 999999999999999999999999 789999999999999999999999999876543 5889888876543210 0
Q ss_pred -----------------hhHHHHHHHHHH-hcCCCCcCCceEEecc----CC---CCCCCcccHHHHHHHHHhcC
Q 008342 511 -----------------GKLAEDVSKFCR-AKMPSYWVPKSVVFAA----LP---KSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 511 -----------------~~~~~~l~~~~~-~~l~~~~~p~~i~~~~----lP---~t~~GKi~r~~l~~~~~~~~ 560 (569)
+....++.++-+ +.+..+.....+.+.+ +. +||+=|+.|..|.+.|+++-
T Consensus 608 ~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~I 682 (691)
T KOG1256|consen 608 DGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQI 682 (691)
T ss_pred ccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHH
Confidence 011122222222 1255566666666644 32 58999999999999998764
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-62 Score=504.16 Aligned_cols=446 Identities=22% Similarity=0.302 Sum_probs=378.5
Q ss_pred HHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCH
Q 008342 27 NRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNA 106 (569)
Q Consensus 27 ~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~ 106 (569)
.++++++|+++|+.+.++.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|++++|+++..+.
T Consensus 10 ~~~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~ 89 (458)
T PRK09029 10 RHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQ 89 (458)
T ss_pred HHHHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCCCH
Confidence 56688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhhcCCCCC
Q 008342 107 TVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEF 186 (569)
Q Consensus 107 ~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 186 (569)
+++..+++++++++++++++... ... +. .. . .. ....
T Consensus 90 ~~~~~~~~~~~~~~~i~~~~~~~-~~~----~~----------~~-~---------------------~~----~~~~-- 126 (458)
T PRK09029 90 PLLEELLPSLTLDFALVLEGENT-FSA----LT----------SL-H---------------------LQ----LVEG-- 126 (458)
T ss_pred HHHHHHHHhcCCCEEEEcCcccc-hhh----cc----------cc-c---------------------cc----cccc--
Confidence 99999999999999998876432 100 00 00 0 00 0000
Q ss_pred CCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEE
Q 008342 187 AWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSIC 266 (569)
Q Consensus 187 ~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~ 266 (569)
.......++++++++|||||||.||+|.+||++++.........++..++|+++..+|++|.+|+...+..+..|+++++
T Consensus 127 ~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~ 206 (458)
T PRK09029 127 AHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVV 206 (458)
T ss_pred cCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEEe
Confidence 00122456789999999999999999999999999988888888899999999999999999998766666667777666
Q ss_pred eccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCCeEecccccccC
Q 008342 267 LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTEL 346 (569)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~YG~tE~ 346 (569)
.+. ..+++.+. ++|.+..+|+++..+...... ..++|.+++||+++++.+.+.+.+.+.++++.||+||+
T Consensus 207 ~~~---~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~-----~~~l~~i~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~ 276 (458)
T PRK09029 207 RDK---QPLEQALA--GCTHASLVPTQLWRLLDNRSE-----PLSLKAVLLGGAAIPVELTEQAEQQGIRCWCGYGLTEM 276 (458)
T ss_pred CCh---HHHHHHHh--hceeeecChHHHHHHHhcccc-----CCcceEEEECCCCCCHHHHHHHHHcCCcEecccccccc
Confidence 543 45677774 799999999999998876543 34799999999999999999998889999999999999
Q ss_pred CCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhh
Q 008342 347 TGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEA 426 (569)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~ 426 (569)
+...+.... ....++|.|++++ .+++.+ |||+++|+.++.||+++++.+...
T Consensus 277 ~~~~~~~~~-------------~~~~~~G~~~~~~-~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~ 328 (458)
T PRK09029 277 ASTVCAKRA-------------DGLAGVGSPLPGR-EVKLVD--------------GEIWLRGASLALGYWRQGQLVPLV 328 (458)
T ss_pred CcceeccCC-------------CCCCCCCCCCCCC-EEEEeC--------------CEEEEecCceeeeeecCccccccc
Confidence 854432110 1125689999988 477753 899999999999999988877666
Q ss_pred hcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcc
Q 008342 427 FANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEAD 506 (569)
Q Consensus 427 ~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~ 506 (569)
..+|||+|||+|+++ +|.+++.||.||+|+++|.+|+|.+||+.|.++|.|.+++|++.+++..|+.++++++...+.
T Consensus 329 ~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~- 406 (458)
T PRK09029 329 NDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEA- 406 (458)
T ss_pred cCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCccc-
Confidence 678999999999999 999999999999999999999999999999999999999999999999899999998876332
Q ss_pred hhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCC
Q 008342 507 ELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP 561 (569)
Q Consensus 507 ~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~ 561 (569)
..++|.++|+++|+.|++|..+.+.+ +|+|++||++|+.|++++.....
T Consensus 407 ------~~~~l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~~~ 456 (458)
T PRK09029 407 ------AVVNLAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQLG 456 (458)
T ss_pred ------CHHHHHHHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhccC
Confidence 45789999999999999999999877 99999999999999999986543
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-62 Score=500.35 Aligned_cols=431 Identities=18% Similarity=0.195 Sum_probs=356.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEE
Q 008342 44 KHYTWHQTYRRCRRFASALSKLSI-GLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI 122 (569)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~g~-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 122 (569)
.-+.|+||.++++++|++|.+.|+ ++|++|+++++|++++++++|||+++|++++|++|.++.+++.++++++++++++
T Consensus 18 ~~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i 97 (452)
T PRK07445 18 IGYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIW 97 (452)
T ss_pred eecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEE
Confidence 357899999999999999999988 5799999999999999999999999999999999999999999999999999999
Q ss_pred EcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEe
Q 008342 123 VDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY 202 (569)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 202 (569)
++.+..... .... .. ......++++++++|
T Consensus 98 ~~~~~~~~~----------------------~~~~-------------------------~~---~~~~~~~~~~~~i~~ 127 (452)
T PRK07445 98 GLDQLKLSH----------------------PPPL-------------------------PS---QGILPNLETGWIMIP 127 (452)
T ss_pred ecCcccccc----------------------CCCC-------------------------Cc---cccCCCCCCcEEEEe
Confidence 876532100 0000 00 001134578999999
Q ss_pred ccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhc
Q 008342 203 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATH 282 (569)
Q Consensus 203 TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 282 (569)
||||||.||+|.+||+++..........+++.+ ++.++.+|++|.+|+...+.++..|+++++.+............++
T Consensus 128 TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~ 206 (452)
T PRK07445 128 TGGSSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNP 206 (452)
T ss_pred CCCCCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhc
Confidence 999999999999999999888877777777655 4678899999999998777777888888776533233333444578
Q ss_pred CccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCCeEecccccccCCCCccccccCCCCCCC
Q 008342 283 GVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL 362 (569)
Q Consensus 283 ~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 362 (569)
++|++.++|++++.+.+.. ... ++++|.+++||+++++++.+++.+.++++++.||+||+++.++.....
T Consensus 207 ~~t~~~~vP~~l~~l~~~~---~~~-l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~------ 276 (452)
T PRK07445 207 SDFFLSLVPTQLQRLLQLR---PQW-LAQFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQIATLKPD------ 276 (452)
T ss_pred CceEEEehHHHHHHHHhhC---hhh-hhcceEEEECCccCCHHHHHHHHhcCCeEecCcchhhhcccccccCch------
Confidence 8999999999999998632 122 789999999999999999998887799999999999998654432211
Q ss_pred CchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcC
Q 008342 363 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP 442 (569)
Q Consensus 363 ~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~ 442 (569)
.......++|.|.+++ +++|+ .+ +.|||+++|++++.||+++... .+|||+|||+|++++
T Consensus 277 ---~~~~~~~~~G~~~p~~-~v~i~---------~g--~~Gel~v~g~~~~~gY~~~~~~-----~~g~~~TGDl~~~d~ 336 (452)
T PRK07445 277 ---DFLAGNNSSGQVLPHA-QITIP---------AN--QTGNITIQAQSLALGYYPQILD-----SQGIFETDDLGYLDA 336 (452)
T ss_pred ---hhccCCCcCCccCCCC-eEEEc---------CC--CcceEEEeCCccchhhcCCccC-----CCCEEECCCEEEEcC
Confidence 0011236789999998 58887 12 5799999999999999975431 378999999999999
Q ss_pred CCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHH
Q 008342 443 DNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCR 522 (569)
Q Consensus 443 ~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 522 (569)
||++++.||.||+|+++|++|+|.+||++|.+||.|.+|+|++.+++..|+.++++++..++.. ..++++++++
T Consensus 337 dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~~------~~~~l~~~~~ 410 (452)
T PRK07445 337 QGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSI------SLEELKTAIK 410 (452)
T ss_pred CCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCCCC------CHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988999999988765421 3578999999
Q ss_pred hcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCC
Q 008342 523 AKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP 561 (569)
Q Consensus 523 ~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~ 561 (569)
++|+.|++|..+.+++ ||+|++||++|++|++++.++..
T Consensus 411 ~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 450 (452)
T PRK07445 411 DQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRLG 450 (452)
T ss_pred HhCCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHhhC
Confidence 9999999999998877 99999999999999999877543
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-61 Score=505.65 Aligned_cols=494 Identities=26% Similarity=0.361 Sum_probs=402.4
Q ss_pred HHHhhhhCCCceeeee--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeecccc
Q 008342 26 INRAATLHPTRKSVVY--GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR 103 (569)
Q Consensus 26 l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~ 103 (569)
.+.+++++|+++|+++ .++.+||.||.+++.++|++|.+.|+++|++|+++++|+++++++++||+++|++++++++.
T Consensus 3 ~~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~ 82 (511)
T PRK13391 3 PGIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82 (511)
T ss_pred hhhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccc
Confidence 3567889999999987 46889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhhcCC
Q 008342 104 LNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGD 183 (569)
Q Consensus 104 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 183 (569)
++.+.+.++++.++++.++++........+...... .....+.+.+.... .....+.+.+....
T Consensus 83 ~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 146 (511)
T PRK13391 83 LTPAEAAYIVDDSGARALITSAAKLDVARALLKQCP-------GVRHRLVLDGDGEL---------EGFVGYAEAVAGLP 146 (511)
T ss_pred cCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCC-------CceEEEEecCCCCC---------cccccHHHHhcCCC
Confidence 999999999999999999999877655544433322 22333343321110 11223333332211
Q ss_pred CCCCCCCCCCcCceEEEEeccCCCCCCcceeec--chHHHH---HHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 184 PEFAWKPPEDEWQSIALGYTSGTTASPKGVVVS--HRGAYL---MSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 184 ~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t--~~~~~~---~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
. ......++.+.++|||||||.||+|.++ |.+... ........+++.+++++++..|++|.+++...+..+
T Consensus 147 ~----~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~ 222 (511)
T PRK13391 147 A----TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVI 222 (511)
T ss_pred C----CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHH
Confidence 1 1112345678999999999999999964 555432 223344566788899999999999999988888888
Q ss_pred HhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCcccceeeeecCCCCCHHHHHHhhh-cCC
Q 008342 259 ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMSQ-KGF 335 (569)
Q Consensus 259 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~~~ 335 (569)
..|+++++.+.+++..+++.++++++|++.++|+++..+.+.... .... +++++.+++||+++++++.+++.+ +|.
T Consensus 223 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~-~~~l~~~~~gg~~~~~~~~~~~~~~~g~ 301 (511)
T PRK13391 223 RLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYD-LSSLEVAIHAAAPCPPQVKEQMIDWWGP 301 (511)
T ss_pred HcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCC-ccceeEEEEccCCCCHHHHHHHHHHcCC
Confidence 889999888888999999999999999999999999988765432 1223 789999999999999999999885 488
Q ss_pred eEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccccc
Q 008342 336 RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKG 415 (569)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~g 415 (569)
.+++.||+||++++...... ......+++|.|.++. ++++|++ +++++.| +.|||+++|+ ++.|
T Consensus 302 ~v~~~YG~tE~~~~~~~~~~----------~~~~~~~~vG~~~~g~--~~i~d~~-~~~~~~g--~~Gel~~~g~-~~~g 365 (511)
T PRK13391 302 IIHEYYAATEGLGFTACDSE----------EWLAHPGTVGRAMFGD--LHILDDD-GAELPPG--EPGTIWFEGG-RPFE 365 (511)
T ss_pred ceeeeeccccccceEEecCc----------cccccCCCcCCcccce--EEEECCC-CCCCCCC--CceEEEEecC-cceE
Confidence 99999999999875433211 0112336889999883 8889875 8888877 7899999999 8899
Q ss_pred ccCCcchhhhhhc--CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCc
Q 008342 416 YLKNPKANEEAFA--NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493 (569)
Q Consensus 416 y~~~~~~~~~~~~--~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~ 493 (569)
|+++++.+...|. ++||+|||+|+++++|.+++.||.||+++++|.++++.+||++|.+||.|.+++|++.+++..|+
T Consensus 366 y~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~ 445 (511)
T PRK13391 366 YLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGE 445 (511)
T ss_pred EcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCc
Confidence 9999988888774 38999999999999999999999999999999999999999999999999999999999988888
Q ss_pred eeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 494 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 494 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
.+.++++..++... .+...++++++++++++.|++|..+.+++ +|+|++||++|+.|++.+..
T Consensus 446 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 446 EVKAVVQPVDGVDP--GPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred eeEEEEEECCCCCc--ccchHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence 89998887664322 11255789999999999999999999776 99999999999999998764
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-61 Score=505.39 Aligned_cols=492 Identities=26% Similarity=0.359 Sum_probs=400.1
Q ss_pred eeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcC
Q 008342 37 KSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHA 116 (569)
Q Consensus 37 ~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~ 116 (569)
.|++..++.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++++++.++.+++.++++.+
T Consensus 3 ~~~~~~~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~ 82 (509)
T PRK12406 3 ATIISGDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDS 82 (509)
T ss_pred eEEEECCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhcc
Confidence 46777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhh-----HHhhhcchhhHHhhhhcCCCCCCCCCC
Q 008342 117 SSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQL-----EYALARGAIEYEKFLETGDPEFAWKPP 191 (569)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (569)
++++++++......+.... + ....++.+.......... ..........|++++...... ..
T Consensus 83 ~~~~i~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 148 (509)
T PRK12406 83 GARVLIAHADLLHGLASAL---P-------AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEPY----DG 148 (509)
T ss_pred CCcEEEEccchhhhhhhhh---h-------cccceeecccccccccccccccccccCCCCccCHHHHhcccCcc----CC
Confidence 9999999887655443221 1 111122111110000000 000112334555554332211 12
Q ss_pred CCcCceEEEEeccCCCCCCcceeecchHH---HHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEec
Q 008342 192 EDEWQSIALGYTSGTTASPKGVVVSHRGA---YLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR 268 (569)
Q Consensus 192 ~~~~~~~~i~~TSGsTG~pk~v~~t~~~~---~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~ 268 (569)
...+++++++|||||||.||+|.++|.+. ..........+++.+++++++..|++|..+..+.+..+..|+++++.+
T Consensus 149 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 228 (509)
T PRK12406 149 PPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQP 228 (509)
T ss_pred CCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEcc
Confidence 34679999999999999999999876653 333344455678899999999999999988877777777888888878
Q ss_pred cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCcccceeeeecCCCCCHHHHHHhhhc-CCeEeccccccc
Q 008342 269 QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTE 345 (569)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~-~~~i~~~YG~tE 345 (569)
.+++..+++.++++++|++.++|+++..++..... .... +++++.+++||+++++++.+++.+. ++.+++.||+||
T Consensus 229 ~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE 307 (509)
T PRK12406 229 RFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYD-VSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTE 307 (509)
T ss_pred CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCC-CCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccc
Confidence 88999999999999999999999999999875432 2223 7899999999999999999999864 899999999999
Q ss_pred CCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccc-cccCCcchhh
Q 008342 346 LTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK-GYLKNPKANE 424 (569)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~-gy~~~~~~~~ 424 (569)
++.+++.+... .....+++|.|.+++ .++++|+. +++++.+ +.|||+++++.++. +|++++..+.
T Consensus 308 ~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~~~y~~~~~~~~ 373 (509)
T PRK12406 308 SGAVTFATSED----------ALSHPGTVGKAAPGA-ELRFVDED-GRPLPQG--EIGEIYSRIAGNPDFTYHNKPEKRA 373 (509)
T ss_pred cCceEecCccc----------ccccCCCcCccCCCc-EEEEECCC-CCCCCCC--CceEEEEECCccccccccCCchhcc
Confidence 98755443211 112236789999999 59999975 8888887 78999999998775 8999998888
Q ss_pred hhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCC
Q 008342 425 EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPE 504 (569)
Q Consensus 425 ~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~ 504 (569)
..+.++||+|||+++++++|.+++.||.||+++++|.+|++.+||++|.++|.|.++++++.++...++.+.+++++.+.
T Consensus 374 ~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 453 (509)
T PRK12406 374 EIDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPG 453 (509)
T ss_pred cccCCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCC
Confidence 88889999999999999999999999999999999999999999999999999999999999888878889999988765
Q ss_pred cchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCCc
Q 008342 505 ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPV 562 (569)
Q Consensus 505 ~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~ 562 (569)
... ..+++.+++++.+++|++|..+.+.+ ||+|++||++|++|++.+.....+
T Consensus 454 ~~~-----~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~~~~ 507 (509)
T PRK12406 454 ATL-----DEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWANAGR 507 (509)
T ss_pred CCC-----CHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHhhccc
Confidence 432 45789999999999999999998776 999999999999999988876554
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=612.91 Aligned_cols=493 Identities=20% Similarity=0.266 Sum_probs=415.0
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
..+++++|++++.++|+++|+++.+.++||+||+++++++|+.|.+.|+++|++|++++++++++++++||++++|++++
T Consensus 3719 ~~~~~~~~~~~~~~~p~~~Av~~~~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~v 3798 (4334)
T PRK05691 3719 EQSYVRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYL 3798 (4334)
T ss_pred ccCHHHHHHHHHHhCCCceEEEcCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEe
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
|++|.++.+++.++++++++++++++.............+... ....++..++.
T Consensus 3799 pld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--------------------- 3852 (4334)
T PRK05691 3799 PLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCA-----NRPRLLVWEEV--------------------- 3852 (4334)
T ss_pred CCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccc-----cccceeeeccc---------------------
Confidence 9999999999999999999999999987655443332222100 11112221111
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
...............+++.++|+|||||||.||||+++|+++.+...+....++++++|+++...++++..+++..+.++
T Consensus 3853 ~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l 3932 (4334)
T PRK05691 3853 QAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAP 3932 (4334)
T ss_pred ccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHH
Confidence 00011111112234678999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HhcceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc--
Q 008342 259 ALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-- 333 (569)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~-- 333 (569)
+.|+++++++. .++..+++.++++++|++.++|+++..++..... .+++||.+++|||++++++.++|.+.
T Consensus 3933 ~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~lr~~~~gGe~l~~~~~~~~~~~~~ 4008 (4334)
T PRK05691 3933 LFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ----ALDGLRWMLPTGEAMPPELARQWLQRYP 4008 (4334)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc----cCCCceEEEecCCcCCHHHHHHHHHhCC
Confidence 99999988853 5789999999999999999999999988754322 27889999999999999999999754
Q ss_pred CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccc
Q 008342 334 GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVM 413 (569)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 413 (569)
+++++|.||+||++..++....... ........+|.|++++ ++.|+|.. ++++|.| ..|||+|.|+.++
T Consensus 4009 ~~~l~n~YG~TE~t~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~~~v~d~~-~~~~p~g--~~GEL~i~G~~v~ 4077 (4334)
T PRK05691 4009 QIGLVNAYGPAECSDDVAFFRVDLA-------STRGSYLPIGSPTDNN-RLYLLDEA-LELVPLG--AVGELCVAGTGVG 4077 (4334)
T ss_pred CCeEEeCccCccceeEEEEEEcccc-------cccCCcCCCCCccCCC-EEEEECCC-CCCCCCC--CceEEEEeccccc
Confidence 8899999999999876654432211 1111235699999999 69999976 8999998 8999999999999
Q ss_pred ccccCCcchhhhhhc--------CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEe
Q 008342 414 KGYLKNPKANEEAFA--------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVA 485 (569)
Q Consensus 414 ~gy~~~~~~~~~~~~--------~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 485 (569)
+||+++++.+.++|. ++||+|||++++++||.++++||.|++||++|.+|.+.|||..|.++|+|.+++|+.
T Consensus 4078 ~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~ 4157 (4334)
T PRK05691 4078 RGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAV 4157 (4334)
T ss_pred ccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEE
Confidence 999999999999983 469999999999999999999999999999999999999999999999999988876
Q ss_pred ecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHH
Q 008342 486 RPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK 555 (569)
Q Consensus 486 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (569)
... ..++.+++|++....... .....++|++++++.||.|++|+.+++++ ||+|++||+||++|++.
T Consensus 4158 ~~~-~~~~~l~a~~~~~~~~~~--~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4158 QEG-VNGKHLVGYLVPHQTVLA--QGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred ecC-CCCcEEEEEEeCCccccc--chHHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCCC
Confidence 543 446788999887655322 12256789999999999999999998766 99999999999999865
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=503.79 Aligned_cols=459 Identities=17% Similarity=0.195 Sum_probs=346.6
Q ss_pred cCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccc------hHHHHHHHHHHhhhcCCCCCcCe
Q 008342 77 APNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEF------FSLAEEALKMMEANSEGKLKTPH 150 (569)
Q Consensus 77 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 150 (569)
++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++.. .+.+....... .. .
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~--------~~-~ 71 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAA--------PA-K 71 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcc--------cc-e
Confidence 589999999999999999999999999999999999999999999998642 12222211111 11 2
Q ss_pred EEEecCCCcchhhhHHhhhcchhhHHhhhhcCCC------CCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHH
Q 008342 151 LIVIGDESCDSKQLEYALARGAIEYEKFLETGDP------EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMS 224 (569)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~ 224 (569)
.+.+........ . ........|.+++..... .........++++++|+|||||||.||+|.+||.+++...
T Consensus 72 ~i~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~ 148 (499)
T PLN03051 72 AIVLPAAGEPVA-V--PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCA 148 (499)
T ss_pred EEEEeccCcccC-C--ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHH
Confidence 222221100000 0 000112346665532110 0111111356899999999999999999999999988766
Q ss_pred HHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEec-cCChHHHHHHHHhcCccEEeehHHHHHHHHccCC-
Q 008342 225 LNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASP- 302 (569)
Q Consensus 225 ~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~- 302 (569)
......+++.++|++++.+|++|.+++...+.++..|+++++.. .+++..+++.|+++++|++.++|+++..|++...
T Consensus 149 ~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~ 228 (499)
T PLN03051 149 SDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAF 228 (499)
T ss_pred HHHHHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcc
Confidence 65556678889999999999999999876666677788887776 4788999999999999999999999999887543
Q ss_pred -CCCCCCcccceeeeecCCCCCHHHHHHhhh-c--CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCcee
Q 008342 303 -EDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT 378 (569)
Q Consensus 303 -~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 378 (569)
....+ +++||.+++||++++++..+++++ . ++++++.||+||+++.+...... .....+++|.|.
T Consensus 229 ~~~~~~-~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~----------~~~~~~~~G~p~ 297 (499)
T PLN03051 229 AMEGLD-WSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLL----------QPQAPGAFSTAS 297 (499)
T ss_pred ccccCC-chhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeeccccc----------CCCCCccccCCC
Confidence 22233 789999999999999999887776 3 47899999999987543321110 011236899999
Q ss_pred eccCCceeeeCCCCcccCCCCCceEEEEEecCcc--cccccCCcchhhhhhcCC----------eeecCceeEEcCCCeE
Q 008342 379 ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV--MKGYLKNPKANEEAFANG----------WFHSGDLAVKHPDNYI 446 (569)
Q Consensus 379 ~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~--~~gy~~~~~~~~~~~~~g----------~~~tGD~~~~~~~g~l 446 (569)
+++ +++|+|++ +++++.|.++.|||+++|+.+ +.||++++ .+ ..+.+| ||+|||+|++|+||++
T Consensus 298 ~~~-~~~ivd~~-g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~-~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l 373 (499)
T PLN03051 298 LGT-RFVLLNDN-GVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HD-KVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYF 373 (499)
T ss_pred CCc-eEEEECCC-CCCCCCCCCcceEEEEecCcCCCCccccCCc-cc-ceeeecCCccccCCcceeecCCeEEECCCCcE
Confidence 999 69999975 888888744589999999976 57999754 22 233344 7999999999999999
Q ss_pred EEecccCceEEeCceeechHHHHHHHhc-CCCceeeEEEeecCCCCC-ceeeEEE---EecCCcchhhhhhHHHHHHHHH
Q 008342 447 EIKDRLKDVIISGGENISSVEVEKVLYL-HPLVLEAAVVARPDERWG-ESPCAFV---TLKPEADELDKGKLAEDVSKFC 521 (569)
Q Consensus 447 ~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~~~v~~~~~~~~g-~~~~~~v---~~~~~~~~~~~~~~~~~l~~~~ 521 (569)
+|.||.||+|+++|++|+|.|||++|.+ ||.|.+++|++.+++..| +.++++| ++.++....+.++..+.+++++
T Consensus 374 ~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l 453 (499)
T PLN03051 374 CVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAI 453 (499)
T ss_pred EEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHH
Confidence 9999999999999999999999999986 999999999999999888 6788888 6665431122223445566666
Q ss_pred HhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCCc
Q 008342 522 RAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPV 562 (569)
Q Consensus 522 ~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~ 562 (569)
+++|+.+..|..+.+++ ||+|++||++|++|++.+.+....
T Consensus 454 ~~~l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 495 (499)
T PLN03051 454 QTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKKELSG 495 (499)
T ss_pred HhhcCCccCCceEEEcCCCCCCCCccHHHHHHHHHHHHhhcc
Confidence 77788766666777777 999999999999999988766553
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-61 Score=531.72 Aligned_cols=492 Identities=17% Similarity=0.165 Sum_probs=379.2
Q ss_pred ccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 17 YTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 17 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
.+.+++.++|+++++++|+++|+++.++++||+||+++++++|++|.+.|+++||+|+|+++|++++++++|||+++|++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav 523 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAV 523 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHH
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYE 176 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (569)
++|++|. .++.++++.++++++|++.+....+.. . ...+++++......... ........++
T Consensus 524 ~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~----~---------~~~iiv~~~~~~~~~~~--~~~~~~~~~~ 585 (994)
T PRK07868 524 AVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQ----L---------PGRVLVLGGGESRDLDL--PDDADVIDME 585 (994)
T ss_pred EEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHh----c---------CceEEEecCCccccccC--Ccchhhhhhh
Confidence 9999985 678999999999999998765543321 1 23455554321100000 0000111222
Q ss_pred hhhhcCCCCCCCC--CCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHH
Q 008342 177 KFLETGDPEFAWK--PPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT 254 (569)
Q Consensus 177 ~~l~~~~~~~~~~--~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 254 (569)
++........... .+..++++++|+|| ||||.||++.++|.+...........+++.++|++++.+|++|.+++...
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~ 664 (994)
T PRK07868 586 KIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVS 664 (994)
T ss_pred hcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHH
Confidence 2111100000100 11235789999998 57888888888887766555555556788999999999999999999887
Q ss_pred HHHHHhcceEEEe-ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc
Q 008342 255 WSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK 333 (569)
Q Consensus 255 ~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~ 333 (569)
+..++.+|+.+++ +.+++..+++.|+++++|++.++|+++..|++........ ++++|.++ |+.+++++.+++.+.
T Consensus 665 l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~-~~slr~~~--g~gl~~~l~~~~~~~ 741 (994)
T PRK07868 665 LGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHG-NHPVRLFI--GSGMPTGLWERVVEA 741 (994)
T ss_pred HHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCC-CCceEEEe--cCCCCHHHHHHHHHH
Confidence 7777787776665 5689999999999999999999999999998764333223 67889766 334999999998854
Q ss_pred -C-CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceee--e--------CCCC--cccCCCC
Q 008342 334 -G-FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVI--D--------ARTN--QPVPADG 399 (569)
Q Consensus 334 -~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~--d--------~~~~--~~~~~~~ 399 (569)
+ +++++.||+||++...... + ....+++|.|++++.+++|. | .+.| +.++.|
T Consensus 742 ~~~~~l~~~YG~TE~~~~~~~~---~----------~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~g- 807 (994)
T PRK07868 742 FAPAHVVEFFATTDGQAVLANV---S----------GAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVN- 807 (994)
T ss_pred hCchheeeeeeccccccccccc---C----------CCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCC-
Confidence 4 8999999999986533211 0 11347899999997435543 2 1234 445555
Q ss_pred CceEEEEEecCcccccccCCcchhh--hhh--cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcC
Q 008342 400 KTIGEIVMRGSCVMKGYLKNPKANE--EAF--ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 475 (569)
Q Consensus 400 ~~~Gel~v~~~~~~~gy~~~~~~~~--~~~--~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 475 (569)
+.|||+++++.. + ++..+. ..| .+|||+|||+|++|+||+|+|+||.||+||++|.+|+|.|||++|.+|
T Consensus 808 -e~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~h 881 (994)
T PRK07868 808 -EVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRI 881 (994)
T ss_pred -CceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcC
Confidence 789999998753 2 232221 123 378999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHH
Q 008342 476 PLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 554 (569)
Q Consensus 476 ~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (569)
|.|.+|+|++.+++. ++.++++|++.++... ..++|+++|++ ++.|++|..+++++ ||+|++||++|++|++
T Consensus 882 p~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~-----~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~ 954 (994)
T PRK07868 882 GGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAI-----TAADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRA 954 (994)
T ss_pred CCeeEEEEEeecCCC-CceEEEEEEeCCCCcC-----CHHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHh
Confidence 999999999998875 6788999988766433 45789999986 99999999999887 9999999999999986
Q ss_pred HHH
Q 008342 555 KAK 557 (569)
Q Consensus 555 ~~~ 557 (569)
...
T Consensus 955 ~~l 957 (994)
T PRK07868 955 AGI 957 (994)
T ss_pred cCC
Confidence 644
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-60 Score=498.98 Aligned_cols=485 Identities=26% Similarity=0.355 Sum_probs=396.2
Q ss_pred eeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcC
Q 008342 37 KSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHA 116 (569)
Q Consensus 37 ~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~ 116 (569)
.++.+.++.+||.||.+++.++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.+
T Consensus 3 ~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~ 82 (502)
T PRK08276 3 VIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDS 82 (502)
T ss_pred eEecCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcC
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCc
Q 008342 117 SSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQ 196 (569)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 196 (569)
+++++|+++.......+....... ....++...... .....|++........ .....++
T Consensus 83 ~~~~ii~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~----~~~~~~~ 141 (502)
T PRK08276 83 GAKVLIVSAALADTAAELAAELPA------GVPLLLVVAGPV-----------PGFRSYEEALAAQPDT----PIADETA 141 (502)
T ss_pred CCCEEEEccchhhHHHHHhhhccc------cccEEEEeCCCC-----------CccccHHHHHhcCCCC----CCCCCCc
Confidence 999999998776655544332210 122333332110 1223444444332211 1234567
Q ss_pred eEEEEeccCCCCCCcceeecchHHHHHH------HHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEeccC
Q 008342 197 SIALGYTSGTTASPKGVVVSHRGAYLMS------LNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQV 270 (569)
Q Consensus 197 ~~~i~~TSGsTG~pk~v~~t~~~~~~~~------~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~ 270 (569)
.++++|||||||.||+|.++|.++.... ...........++++++..|++|.+++...+.....|+++++.+.+
T Consensus 142 ~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 221 (502)
T PRK08276 142 GADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKF 221 (502)
T ss_pred ceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCC
Confidence 8999999999999999999987754322 1111122234778999999999999988877777788888777888
Q ss_pred ChHHHHHHHHhcCccEEeehHHHHHHHHccCCCC--CCCCcccceeeeecCCCCCHHHHHHhhhc-CCeEecccccccCC
Q 008342 271 TAKAVYTAIATHGVTHFCAAPVVLNAIANASPED--TILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELT 347 (569)
Q Consensus 271 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--~~~~l~~l~~~~~~g~~l~~~~~~~~~~~-~~~i~~~YG~tE~~ 347 (569)
++..+++.++++++|++.++|+++..+++..... ..+ ++++|.++++|+++++++.+++.+. +..+++.||+||++
T Consensus 222 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~ 300 (502)
T PRK08276 222 DAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYD-VSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGG 300 (502)
T ss_pred CHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCC-cccceEEEecCCCCCHHHHHHHHHHhCcHhhhhccccccc
Confidence 9999999999999999999999999998765322 223 7899999999999999999999854 88899999999998
Q ss_pred CCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhh
Q 008342 348 GPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 427 (569)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~ 427 (569)
++++..... .....+++|.|+ ++ .++++|++ +.+++.| +.|||+++|++++.||++++..+...+
T Consensus 301 ~~~~~~~~~----------~~~~~~~~G~~~-~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~ 365 (502)
T PRK08276 301 GVTVITSED----------WLAHPGSVGKAV-LG-EVRILDED-GNELPPG--EIGTVYFEMDGYPFEYHNDPEKTAAAR 365 (502)
T ss_pred ceeEecCcc----------ccccCCCcceec-cc-EEEEECCC-CCCCcCC--CceEEEEECCCccchhcCCHHHHHHHh
Confidence 755443210 112236789999 77 69999865 7888877 789999999999999999999998888
Q ss_pred cC-CeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcc
Q 008342 428 AN-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEAD 506 (569)
Q Consensus 428 ~~-g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~ 506 (569)
.+ +||+|||+++++++|.+++.||.||+++++|.++++.+||.+|.++|.|.++++++..++..++.+.++++..++..
T Consensus 366 ~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 445 (502)
T PRK08276 366 NPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGAD 445 (502)
T ss_pred cCCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCC
Confidence 65 99999999999999999999999999999999999999999999999999999999999888999999999876543
Q ss_pred hhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 507 ELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 507 ~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
. .....+.+.++++++++.+++|..+++++ ||+|++||++|++|++.+.+..
T Consensus 446 ~--~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 498 (502)
T PRK08276 446 A--GDALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEGR 498 (502)
T ss_pred C--ChhhHHHHHHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhhh
Confidence 2 11245689999999999999999999777 9999999999999999987654
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=603.91 Aligned_cols=484 Identities=19% Similarity=0.239 Sum_probs=410.4
Q ss_pred ccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 17 YTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 17 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
....++.++|+++++.+|+++|+++.++++||+||.++++++|++|.+.|+++|++|++++++++++++++|||+++|++
T Consensus 1128 ~~~~~l~~~~~~~a~~~p~~~Al~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~ 1207 (4334)
T PRK05691 1128 PAQAWLPELLNEQARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGA 1207 (4334)
T ss_pred CccCCHHHHHHHHHHhCCCCeEEEECCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHH
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYE 176 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (569)
++|++|.++.+++.+++++++++++|++......+... .....+.++... ..
T Consensus 1208 ~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~------------~~~~~~~~~~~~----------------~~ 1259 (4334)
T PRK05691 1208 YVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA------------EGVSAIALDSLH----------------LD 1259 (4334)
T ss_pred EEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc------------cCceEEeecccc----------------cc
Confidence 99999999999999999999999999987654322110 011122222110 00
Q ss_pred hhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHH
Q 008342 177 KFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWS 256 (569)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~ 256 (569)
..+.........++++++++|||||||.||||.++|+++.....+....++++++|+++...|++|..++...+.
T Consensus 1260 -----~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~~~ 1334 (4334)
T PRK05691 1260 -----SWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFW 1334 (4334)
T ss_pred -----ccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHH
Confidence 000111112245689999999999999999999999999999888888899999999999999999999888888
Q ss_pred HHHhcceEEEec---cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc
Q 008342 257 LAALCGTSICLR---QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK 333 (569)
Q Consensus 257 ~~~~g~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~ 333 (569)
+++.|+++++.+ ..++..+++.++++++|++.++|++++.+.+.... .. ++++|.+++||+++++++.++|.+.
T Consensus 1335 ~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~--~~-~~~lr~~~~gGe~l~~~~~~~~~~~ 1411 (4334)
T PRK05691 1335 PLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA--AA-CTSLRRLFSGGEALPAELRNRVLQR 1411 (4334)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc--cc-CCcccEEEEeecCCCHHHHHHHHHh
Confidence 888899888874 36889999999999999999999999999865332 22 7899999999999999999998854
Q ss_pred --CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCc
Q 008342 334 --GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC 411 (569)
Q Consensus 334 --~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 411 (569)
+++++|.||+||++..++...... ......++|.|++++ .++|+|++ ++++|.| +.|||+|.|++
T Consensus 1412 ~~~~~l~n~YG~TE~~~~~~~~~~~~---------~~~~~~~iG~p~~~~-~~~i~d~~-~~~vp~G--~~GEL~i~G~~ 1478 (4334)
T PRK05691 1412 LPQVQLHNRYGPTETAINVTHWQCQA---------EDGERSPIGRPLGNV-LCRVLDAE-LNLLPPG--VAGELCIGGAG 1478 (4334)
T ss_pred CCCcEEEeCCCcChheeeeeeeeccc---------ccCCCCcccceeCCC-EEEEECCC-CCCCCCC--CceEEEecCcc
Confidence 789999999999986655432111 011236799999999 69999976 8999988 89999999999
Q ss_pred ccccccCCcchhhhhhcC--------CeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEE
Q 008342 412 VMKGYLKNPKANEEAFAN--------GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483 (569)
Q Consensus 412 ~~~gy~~~~~~~~~~~~~--------g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 483 (569)
+++||+++++.+.+.|.. +||+|||+|++++||.++++||.||+||++|++|.|.|||.+|.++|+|.+++|
T Consensus 1479 v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v 1558 (4334)
T PRK05691 1479 LARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAV 1558 (4334)
T ss_pred cchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEE
Confidence 999999999999998832 499999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHH
Q 008342 484 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK 555 (569)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (569)
++.++.. ++.++++++...+... ..++|+++++++||.|++|..+++.+ ||+|++||++|++|++.
T Consensus 1559 ~~~~~~~-~~~lva~~~~~~~~~~-----~~~~l~~~l~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691 1559 LVREGAA-GAQLVGYYTGEAGQEA-----EAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred EEeeCCC-CCEEEEEEEeCCCCCC-----CHHHHHHHHHHhCccccCCcEEEEccccCCCCCCCcChhhcCcc
Confidence 8765543 5788999887665433 45689999999999999999999777 99999999999999764
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-60 Score=543.60 Aligned_cols=497 Identities=21% Similarity=0.207 Sum_probs=394.3
Q ss_pred ccCHHHHHHHhhhhCC-Cceeeee-CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 19 ALTPLWFINRAATLHP-TRKSVVY-GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p-~~~a~~~-~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
+.++.+.+++.++++| ++.++.+ .++++||+||+++++++|++|.+ |+++||+|+++++|+++++++++||+++|++
T Consensus 630 ~~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v 708 (1140)
T PRK06814 630 DRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRV 708 (1140)
T ss_pred cCCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCE
Confidence 5678888999888886 5677776 36899999999999999999975 9999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccchHHH--HHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhh
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFFSLA--EEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIE 174 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (569)
++++++.++.+++.+++++++++++|++++..... ......+. ....++.+++..... .....
T Consensus 709 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~--------~~~~~ 773 (1140)
T PRK06814 709 PAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALE-------FGIRIIYLEDVRAQI--------GLADK 773 (1140)
T ss_pred EEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhc-------cCceEEEehHhhccC--------ChHHH
Confidence 99999999999999999999999999987654322 11111111 223445544321100 00011
Q ss_pred HHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHH-
Q 008342 175 YEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY- 253 (569)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~- 253 (569)
+.+......+... .....++++++++|||||||.||+|.+||+++..........++++++|++++.+|++|.+++..
T Consensus 774 ~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 852 (1140)
T PRK06814 774 IKGLLAGRFPLVY-FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGG 852 (1140)
T ss_pred HHHHhhccCCccc-cCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHH
Confidence 1122211111111 11346789999999999999999999999999988888888889999999999999999999854
Q ss_pred HHHHHHhcceEEEecc-CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh
Q 008342 254 TWSLAALCGTSICLRQ-VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ 332 (569)
Q Consensus 254 ~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~ 332 (569)
.+..+..|+++++.+. .+...+.+.++++++|++.++|++++.+.+... ..+ ++++|.+++||+++++++.+.+.+
T Consensus 853 ~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--~~~-~~~lr~v~~gg~~l~~~~~~~~~~ 929 (1140)
T PRK06814 853 LVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH--PYD-FRSLRYVFAGAEKVKEETRQTWME 929 (1140)
T ss_pred HHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc--ccc-ccceeEEEEcCCcCCHHHHHHHHH
Confidence 4444556666666643 566788999999999999999999998876532 223 789999999999999999999884
Q ss_pred -cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCc
Q 008342 333 -KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC 411 (569)
Q Consensus 333 -~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 411 (569)
.++++++.||+||+++.+..+... ....+++|.|.+++ ++++.+.+ + .+ +.|||+++|++
T Consensus 930 ~~~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~g~-~~~~~~~~-~----~~--~~Gel~v~g~~ 990 (1140)
T PRK06814 930 KFGIRILEGYGVTETAPVIALNTPM-----------HNKAGTVGRLLPGI-EYRLEPVP-G----ID--EGGRLFVRGPN 990 (1140)
T ss_pred HhCCcEEeccccccccceEEecCCC-----------CCCCCcCCccCCCC-eEEEeecC-C----CC--CceEEEEeCCC
Confidence 489999999999998765443211 12246899999999 58887654 2 12 57999999999
Q ss_pred ccccccCCcchhh-hhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCC
Q 008342 412 VMKGYLKNPKANE-EAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 490 (569)
Q Consensus 412 ~~~gy~~~~~~~~-~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 490 (569)
++.||+++++... ....+|||+|||++++|+||.+++.||.||+|+++|++|+|.+||++|.+++.+.+++|++.+++.
T Consensus 991 ~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~ 1070 (1140)
T PRK06814 991 VMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDAR 1070 (1140)
T ss_pred cchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCC
Confidence 9999998764332 223689999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCceeeEEEEecCCcchhhhhhHHHHHHHHHHhc-CCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCCc
Q 008342 491 WGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPV 562 (569)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~ 562 (569)
.|+.+++++. ..+ . ..+++.+++++. ++.|++|..+.+++ ||+|++||++|++|++++.+....
T Consensus 1071 ~g~~~~~~~~-~~~--~-----~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 1136 (1140)
T PRK06814 1071 KGERIILLTT-ASD--A-----TRAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAAAK 1136 (1140)
T ss_pred CCceEEEEEc-CCC--c-----CHHHHHHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhhcc
Confidence 8888776654 211 1 346788888864 99999999998777 999999999999999998876443
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=510.33 Aligned_cols=501 Identities=17% Similarity=0.151 Sum_probs=373.2
Q ss_pred ccccCHHHHHHHhhhhCCCceeeeeCC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHh
Q 008342 17 YTALTPLWFINRAATLHPTRKSVVYGS------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGA 90 (569)
Q Consensus 17 ~~~~~l~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~ 90 (569)
....++.++|+++++++|+++|+++.+ +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 46 ~~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 125 (624)
T PRK12582 46 PYPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAA 125 (624)
T ss_pred CcccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHH
Confidence 346789999999999999999998754 68999999999999999999999999999999999999999999999
Q ss_pred hhcCceEeeccccCCH-----HHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhH
Q 008342 91 PMAGAVLNSINIRLNA-----TVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE 165 (569)
Q Consensus 91 ~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (569)
+++|++++|++|.++. +++.++++.++++++|+++... .......+.. ....++.+......
T Consensus 126 ~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~------~~~~~i~~~~~~~~----- 192 (624)
T PRK12582 126 MQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAP--FARALAALDL------LDVTVVHVTGPGEG----- 192 (624)
T ss_pred HHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHH--HHHHHHhhhh------cCceEEEEcCCCcc-----
Confidence 9999999999999885 8999999999999999986421 1111111110 01223444322110
Q ss_pred HhhhcchhhHHhhhhcCCCCC--CCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCC---CcEEE
Q 008342 166 YALARGAIEYEKFLETGDPEF--AWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNE---GAVFL 240 (569)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~---~d~~~ 240 (569)
.....+.++........ .......++++++|+|||||||.||+|.+||+++..........+.... .++++
T Consensus 193 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l 268 (624)
T PRK12582 193 ----IASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSL 268 (624)
T ss_pred ----cccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEE
Confidence 11234555443322110 0112245689999999999999999999999999887766555444443 57999
Q ss_pred EcCCccchhhHHHHHHHH-HhcceEEEec-cCCh---HHHHHHHHhcCccEEeehHHHHHHHHccCCCCC---CCCcccc
Q 008342 241 WTLPMFHGNGWSYTWSLA-ALCGTSICLR-QVTA---KAVYTAIATHGVTHFCAAPVVLNAIANASPEDT---ILPLTNV 312 (569)
Q Consensus 241 ~~~p~~~~~g~~~~~~~~-~~g~~~~~~~-~~~~---~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~---~~~l~~l 312 (569)
..+|++|.+|+...+... ..|+++++.+ .+.+ .++++.++++++|++.++|.++..|.+...... ...++++
T Consensus 269 ~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~sl 348 (624)
T PRK12582 269 DWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNL 348 (624)
T ss_pred EechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhhe
Confidence 999999999987665554 4555555543 2333 456777899999999999999998876432211 0116789
Q ss_pred eeeeecCCCCCHHHHHHhhhc-------CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCce
Q 008342 313 VNVNTAGAPPPPSLLFAMSQK-------GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLD 385 (569)
Q Consensus 313 ~~~~~~g~~l~~~~~~~~~~~-------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 385 (569)
|.+++||+++++++.+++.+. ++++++.||+||+++++...... ....+++|.|.+++ +++
T Consensus 349 r~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~-~v~ 416 (624)
T PRK12582 349 RLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD-----------TERVGLIGLPLPGV-ELK 416 (624)
T ss_pred eEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC-----------CCCCCCCCcCCCCc-EEE
Confidence 999999999999999998863 36899999999998655422110 12347899999999 588
Q ss_pred eeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhh-cCCeeecCceeEE-c---CCCeEEEecccCceEE-eC
Q 008342 386 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVK-H---PDNYIEIKDRLKDVII-SG 459 (569)
Q Consensus 386 i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~-~---~~g~l~~~GR~~d~i~-~~ 459 (569)
+++ .| +.|||+++|++++.|||++++.+.+.| .+|||+|||+|++ + ++|++++.||.||+|+ .+
T Consensus 417 i~~--------~G--~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~ 486 (624)
T PRK12582 417 LAP--------VG--DKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLST 486 (624)
T ss_pred Ecc--------CC--CceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCC
Confidence 753 23 689999999999999999999998888 5899999999998 4 4689999999999999 68
Q ss_pred ceeechHHHH--HHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCc----------c---hhhhhhHHHHH---HHHH
Q 008342 460 GENISSVEVE--KVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEA----------D---ELDKGKLAEDV---SKFC 521 (569)
Q Consensus 460 G~~v~~~~iE--~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~----------~---~~~~~~~~~~l---~~~~ 521 (569)
|++|+|.+|| .++.+||.|.+++|++.+++..| ++|++.... . ..+.++..+.+ .+..
T Consensus 487 G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~g----~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 562 (624)
T PRK12582 487 GTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIG----LLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAH 562 (624)
T ss_pred CcEechHHHHHHHHHhcCcchheEEEEcCCCCcEE----EEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHH
Confidence 9999998885 68889999999999999877644 333322111 0 00111122222 2233
Q ss_pred HhcCCCCc-CCceEEecc-CC------CCCCCcccHHHHHHHHHhcC
Q 008342 522 RAKMPSYW-VPKSVVFAA-LP------KSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 522 ~~~l~~~~-~p~~i~~~~-lP------~t~~GKi~r~~l~~~~~~~~ 560 (569)
++.++.+. +|..+.+.+ +| +|++||+.|+.+.+.|.++-
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i 609 (624)
T PRK12582 563 NAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALV 609 (624)
T ss_pred HhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHH
Confidence 44466776 999888766 65 57888999999988888653
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-60 Score=502.12 Aligned_cols=507 Identities=21% Similarity=0.267 Sum_probs=372.6
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCC---------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHh
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGS---------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGA 90 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~ 90 (569)
|++.++|++++..+|+++|+++.+ +++||+||.+++.++|++|.+.| .+||+|+++++|++++++++|||
T Consensus 1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~ 79 (578)
T PRK05850 1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA 79 (578)
T ss_pred CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence 578899999999999999998643 78999999999999999999999 68999999999999999999999
Q ss_pred hhcCceEeeccc---cCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHh
Q 008342 91 PMAGAVLNSINI---RLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYA 167 (569)
Q Consensus 91 ~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (569)
+++|++++|+++ ..+.+++.++|+++++++++++++..+.+........ ......++.++...
T Consensus 80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--------- 145 (578)
T PRK05850 80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQP-----GQSAPPVIEVDLLD--------- 145 (578)
T ss_pred HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcc-----cccccceEeecccc---------
Confidence 999999999997 4578999999999999999999876655543221111 00111222221110
Q ss_pred hhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHh-C-----CCCCcEEEE
Q 008342 168 LARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIW-G-----MNEGAVFLW 241 (569)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~-~-----~~~~d~~~~ 241 (569)
+.... ........++++++++|||||||.||+|.++|.+++.........+ . ...++++++
T Consensus 146 ----------~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (578)
T PRK05850 146 ----------LDSPR---GSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVS 212 (578)
T ss_pred ----------cccCC---ccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEE
Confidence 00000 0011224568999999999999999999999999988766554332 2 356889999
Q ss_pred cCCccchhhHHHH-HHHHHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHH-HHHHccCCC---CCCCCcccc
Q 008342 242 TLPMFHGNGWSYT-WSLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVL-NAIANASPE---DTILPLTNV 312 (569)
Q Consensus 242 ~~p~~~~~g~~~~-~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~-~~l~~~~~~---~~~~~l~~l 312 (569)
.+|++|..|+... +.+++.|+++++... .++..+++.+++++++.+ .+|.++ ..+...... .... ++++
T Consensus 213 ~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~-~~~l 290 (578)
T PRK05850 213 WLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLD-LGGV 290 (578)
T ss_pred ECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcc-hhhh
Confidence 9999999998654 444556666666653 268999999999999865 556544 333322111 1122 6789
Q ss_pred eeeeecCCCCCHHHHHHhhhc----C---CeEecccccccCCCCccccccCCCCCC--CCchhh------------hhcc
Q 008342 313 VNVNTAGAPPPPSLLFAMSQK----G---FRITHTYGLTELTGPASVCAWKPEWDS--LPFETQ------------ARLN 371 (569)
Q Consensus 313 ~~~~~~g~~l~~~~~~~~~~~----~---~~i~~~YG~tE~~~~~~~~~~~~~~~~--~~~~~~------------~~~~ 371 (569)
|.+++||+++++++.+++.+. + ..+++.||+||++..+........... ...... ....
T Consensus 291 r~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ 370 (578)
T PRK05850 291 LGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPL 370 (578)
T ss_pred eeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceE
Confidence 999999999999998887642 3 369999999998754433211100000 000000 0011
Q ss_pred ccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhc------------CCeeecCceeE
Q 008342 372 ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA------------NGWFHSGDLAV 439 (569)
Q Consensus 372 ~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~------------~g~~~tGD~~~ 439 (569)
.+.|.|. +. +++++|++++.+++.| +.|||+++|++++.||+++++.+.+.|. ++||+|||+|+
T Consensus 371 ~~~g~p~-~~-~~~ivd~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~ 446 (578)
T PRK05850 371 VSYGSPR-SP-TVRIVDPDTCIECPAG--TVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGF 446 (578)
T ss_pred EeccCCC-CC-EEEEEcCCCCcCCCCC--CEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceee
Confidence 1234433 34 5889998878889887 8999999999999999999999998883 47999999999
Q ss_pred EcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhh-hhhHHHHHH
Q 008342 440 KHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELD-KGKLAEDVS 518 (569)
Q Consensus 440 ~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~-~~~~~~~l~ 518 (569)
++ +|+++++||.+|+|+++|++|+|.+||++|.+||.+ +++|++.++. .++.+++++++.++..... .......+.
T Consensus 447 ~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~l~ 523 (578)
T PRK05850 447 IS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLRTVK 523 (578)
T ss_pred EE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccCcchhhhhhHHHHH
Confidence 98 999999999999999999999999999999999985 4778888876 6788999998876543211 111234555
Q ss_pred HHHHhcCCC--CcCCceEEec---cCCCCCCCcccHHHHHHHHHhcCCcc
Q 008342 519 KFCRAKMPS--YWVPKSVVFA---ALPKSATGKIQKHLLRAKAKEMGPVK 563 (569)
Q Consensus 519 ~~~~~~l~~--~~~p~~i~~~---~lP~t~~GKi~r~~l~~~~~~~~~~~ 563 (569)
+.+...++. ...|..+.++ .||+|++||++|++|++.|.+....+
T Consensus 524 ~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~~~~~ 573 (578)
T PRK05850 524 REVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQDEFTR 573 (578)
T ss_pred HHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHcCCccc
Confidence 555554432 2345555543 39999999999999999998876544
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-59 Score=484.98 Aligned_cols=435 Identities=26% Similarity=0.386 Sum_probs=365.1
Q ss_pred eHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEccc
Q 008342 47 TWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQE 126 (569)
Q Consensus 47 Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (569)
||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++++++.++.+.+..++++++++.+++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCC
Q 008342 127 FFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGT 206 (569)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGs 206 (569)
...... .. ..+..+................+++++++|||||
T Consensus 81 ~~~~~~-----------------~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt 122 (436)
T TIGR01923 81 LEEKDF-----------------QA---------------------DSLDRIEAAGRYETSLSASFNMDQIATLMFTSGT 122 (436)
T ss_pred ccccce-----------------ee---------------------cchHhhhhcccccccccccCCcCceEEEEeCCCC
Confidence 321000 00 0001111111111111123456789999999999
Q ss_pred CCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccE
Q 008342 207 TASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTH 286 (569)
Q Consensus 207 TG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~ 286 (569)
||.||+|.++|+++..........++++++|++++.+|++|.+++...+..+..|+++++.+.+ ..+++.++++++|+
T Consensus 123 TG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~--~~~~~~l~~~~~t~ 200 (436)
T TIGR01923 123 TGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF--NQLLEMIANERVTH 200 (436)
T ss_pred CCCCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH--HHHHHHHHHhCCeE
Confidence 9999999999999998888888888999999999999999999998777777788887777554 38999999999999
Q ss_pred EeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCCeEecccccccCCCCccccccCCCCCCCCchh
Q 008342 287 FCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFET 366 (569)
Q Consensus 287 l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~ 366 (569)
+.++|+++..+.+.... .+++|.++++|+++++++.+++.+.++++++.||+||+++.++.+....
T Consensus 201 ~~~~P~~l~~l~~~~~~-----~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~--------- 266 (436)
T TIGR01923 201 ISLVPTQLNRLLDEGGH-----NENLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEM--------- 266 (436)
T ss_pred EEeHHHHHHHHHhCcCC-----CCceEEEEECCCCCCHHHHHHHHHhCCceeeEecCCccchhccCcCccc---------
Confidence 99999999999876542 2679999999999999999998888999999999999987655432111
Q ss_pred hhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeE
Q 008342 367 QARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYI 446 (569)
Q Consensus 367 ~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l 446 (569)
.....++|.|.+++ ++.+.+++.+ +.|||+++|+.++.||++++..+...+.+|||+|||++++++||.+
T Consensus 267 -~~~~~~~G~~~~~~-~~~i~~~~~~--------~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~ 336 (436)
T TIGR01923 267 -LHARPDVGRPLAGR-EIKIKVDNKE--------GHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFL 336 (436)
T ss_pred -cccccCCCccCCCc-EEEEEeCCCC--------CceEEEEECCccchhhCCChhhhhhhhcCCCeeccceEEEcCCCCE
Confidence 01113489999988 5877443321 4699999999999999998888877778899999999999999999
Q ss_pred EEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCC
Q 008342 447 EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP 526 (569)
Q Consensus 447 ~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~ 526 (569)
++.||.||+++++|.++++.+||++|.+++.|.+++|++.++...++.+.++++..++. ..+.+.+++++.++
T Consensus 337 ~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-------~~~~l~~~l~~~l~ 409 (436)
T TIGR01923 337 YVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDI-------SQAKLIAYLTEKLA 409 (436)
T ss_pred EEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCCC-------CHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999998887788888888877642 34688899999999
Q ss_pred CCcCCceEEecc-CCCCCCCcccHHHH
Q 008342 527 SYWVPKSVVFAA-LPKSATGKIQKHLL 552 (569)
Q Consensus 527 ~~~~p~~i~~~~-lP~t~~GKi~r~~l 552 (569)
.+++|..+.+++ ||+|++||++|++|
T Consensus 410 ~~~~p~~i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 410 KYKVPIAFEKLDELPYNASGKILRNQL 436 (436)
T ss_pred CCCCCeEEEEecCCCCCCCCceecccC
Confidence 999999998776 99999999999865
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-59 Score=497.35 Aligned_cols=500 Identities=21% Similarity=0.240 Sum_probs=384.6
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCC---eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGS---KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~---~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
-.++.++|+..++.+|+.+++...+ +.+||.||++++.++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~ 99 (579)
T PRK09192 20 FPTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGL 99 (579)
T ss_pred hhhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCC
Confidence 4589999999999998777654333 6799999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCC-------HHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhh
Q 008342 96 VLNSINIRLN-------ATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYAL 168 (569)
Q Consensus 96 ~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (569)
+++++++..+ .+++.++++.++++++|+++.....+....... ...+.
T Consensus 100 ~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~----------~~~~~--------------- 154 (579)
T PRK09192 100 VPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGN----------PLLHV--------------- 154 (579)
T ss_pred eeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccc----------cccce---------------
Confidence 9999986443 588999999999999999987655444332111 00011
Q ss_pred hcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHh-HhCCCCCcEEEEcCCccc
Q 008342 169 ARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL-IWGMNEGAVFLWTLPMFH 247 (569)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~ 247 (569)
..+.++........ ......++++++++|||||||.||+|.++|++++........ .+++.++|+++..+|++|
T Consensus 155 ----~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 229 (579)
T PRK09192 155 ----LSHAWFKALPEADV-ALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYH 229 (579)
T ss_pred ----eehhhhcccCCCcc-ccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCC
Confidence 11222221111111 112245688999999999999999999999999988877776 788999999999999999
Q ss_pred hhhHHHHHHHHHh-cceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccCCC---CCCCCcccceeeeecC
Q 008342 248 GNGWSYTWSLAAL-CGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE---DTILPLTNVVNVNTAG 319 (569)
Q Consensus 248 ~~g~~~~~~~~~~-g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~---~~~~~l~~l~~~~~~g 319 (569)
.+|+...+...+. |+++++... .++..+++.+.+++++++...|..+..+...... .... ++++|.+++||
T Consensus 230 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~-l~~lr~~~~gG 308 (579)
T PRK09192 230 DMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELD-LSCWRVAGIGA 308 (579)
T ss_pred cchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccc-hhhhheeEecC
Confidence 9998866665444 455544432 3688999999999999887766655555433211 1123 78999999999
Q ss_pred CCCCHHHHHHhhhc----C---CeEecccccccCCCCccccccCCCCCC------------CC-----chhhhhccccCC
Q 008342 320 APPPPSLLFAMSQK----G---FRITHTYGLTELTGPASVCAWKPEWDS------------LP-----FETQARLNARQG 375 (569)
Q Consensus 320 ~~l~~~~~~~~~~~----~---~~i~~~YG~tE~~~~~~~~~~~~~~~~------------~~-----~~~~~~~~~~~G 375 (569)
+++++.+.+.+.+. + ..+++.||+||+++.++.......... .. .........++|
T Consensus 309 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG 388 (579)
T PRK09192 309 DMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCG 388 (579)
T ss_pred ccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecC
Confidence 99999999888743 2 349999999999865554322111000 00 000011135789
Q ss_pred ceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCc
Q 008342 376 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKD 454 (569)
Q Consensus 376 ~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d 454 (569)
.+.++. +++|+|++ +..++.+ +.|||+++|++++.||++++ .+...+ .+|||+|||+|++ ++|+++++||.||
T Consensus 389 ~~~p~~-~v~i~d~~-~~~~~~g--~~Gel~i~g~~~~~gY~~~~-~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd 462 (579)
T PRK09192 389 KALPGH-EIEIRNEA-GMPLPER--VVGHICVRGPSLMSGYFRDE-ESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKD 462 (579)
T ss_pred CcCCCc-EEEEECCC-CCCCCCC--CEEEEEecCCchhhhhcCCc-cccccccCCceeeccceeeE-ECCEEEEEecccc
Confidence 999999 69999976 7888877 79999999999999999984 444444 6899999999999 8999999999999
Q ss_pred eEEeCceeechHHHHHHHhcCCCce--eeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCC-CCcCC
Q 008342 455 VIISGGENISSVEVEKVLYLHPLVL--EAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP-SYWVP 531 (569)
Q Consensus 455 ~i~~~G~~v~~~~iE~~l~~~~~v~--~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~-~~~~p 531 (569)
+|+++|.+|+|.+||++|++||.|. +++|++.+++. ++.++++++..+.... ..++|.+++++.+. .+++|
T Consensus 463 ~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~~~ 536 (579)
T PRK09192 463 LIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISDEE-----RRGQLIHALAALVRSEFGVE 536 (579)
T ss_pred EEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCChH-----HHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999998 89999988875 5577777776554322 45677888887764 57788
Q ss_pred ceEEec---cCCCCCCCcccHHHHHHHHHhcCC
Q 008342 532 KSVVFA---ALPKSATGKIQKHLLRAKAKEMGP 561 (569)
Q Consensus 532 ~~i~~~---~lP~t~~GKi~r~~l~~~~~~~~~ 561 (569)
..+.+. +||+|++||++|++|++++.....
T Consensus 537 ~~i~~~~~~~lP~t~~GKv~R~~l~~~~~~~~~ 569 (579)
T PRK09192 537 AAVELVPPHSLPRTSSGKLSRAKAKKRYLSGAF 569 (579)
T ss_pred ceEEEeCCCCcCCCCCcchhHHHHHHHHHcCCC
Confidence 776654 399999999999999999987655
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-59 Score=444.69 Aligned_cols=520 Identities=21% Similarity=0.263 Sum_probs=425.9
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCC-----------------------eeeeHHHHHHHHHHHHHHHHhcCCCCCCE-EE
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGS-----------------------KHYTWHQTYRRCRRFASALSKLSIGLGTT-VS 74 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~-----------------------~~~Ty~el~~~~~~la~~L~~~g~~~g~~-V~ 74 (569)
.-|+++++++.++++.++.++-..+ .-+||.|+..++.++|.+|.+.|++++++ |+
T Consensus 40 ~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~ 119 (678)
T KOG1180|consen 40 ASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIA 119 (678)
T ss_pred cccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence 6799999999999999999985422 45899999999999999999999997776 99
Q ss_pred EEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEe
Q 008342 75 VIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVI 154 (569)
Q Consensus 75 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 154 (569)
|+++.+.+|+++++||++.+.++|-+...+..+.+.+-|++++++.+|++.+.++.+...++..+ ..+++|.+
T Consensus 120 iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~-------~vk~II~~ 192 (678)
T KOG1180|consen 120 IFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAK-------TVKHIIYF 192 (678)
T ss_pred EEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccC-------ceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999887777777666 67888888
Q ss_pred cCCCcch--hhhHHh--hhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH
Q 008342 155 GDESCDS--KQLEYA--LARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI 230 (569)
Q Consensus 155 ~~~~~~~--~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~ 230 (569)
++.+... ...+.. ....+.+|++++..+.+...+..++.++|+|+|+|||||||.||||+++|.|+++........
T Consensus 193 d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~ 272 (678)
T KOG1180|consen 193 DPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGEN 272 (678)
T ss_pred cCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhccc
Confidence 8643222 222222 234578999999888877666666788999999999999999999999999999998877765
Q ss_pred h-CCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEeccCChHHH--------HHHHHhcCccEEeehHHHHHHHHccC
Q 008342 231 W-GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAV--------YTAIATHGVTHFCAAPVVLNAIANAS 301 (569)
Q Consensus 231 ~-~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~i~~~~~t~l~~~P~~~~~l~~~~ 301 (569)
. .+.+.|+++..+|+.|++-+.+-+.++..|+..-.-+..+...- --.+..++||++.++|.+|+++.+..
T Consensus 273 v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgV 352 (678)
T KOG1180|consen 273 VPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGV 352 (678)
T ss_pred CcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHH
Confidence 5 68899999999999999999999999999988766544332222 22356789999999999999887552
Q ss_pred CCCC-----------------------------------------CCCcccceeeeecCCCCCHHHHHHhhhc-CCeEec
Q 008342 302 PEDT-----------------------------------------ILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITH 339 (569)
Q Consensus 302 ~~~~-----------------------------------------~~~l~~l~~~~~~g~~l~~~~~~~~~~~-~~~i~~ 339 (569)
...- ...-.+||.+++||++++++..+.+.-. .+++.+
T Consensus 353 l~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~q 432 (678)
T KOG1180|consen 353 LSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQ 432 (678)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccccccc
Confidence 1100 0014489999999999999999998854 889999
Q ss_pred ccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCC
Q 008342 340 TYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKN 419 (569)
Q Consensus 340 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~ 419 (569)
+||.||+++.++...+. ....+.+|.|++.+ +++++|-+.+.=.+.+....||||++|++++.||+++
T Consensus 433 GYGLTEtca~~tv~e~~-----------d~~~g~vG~pl~c~-eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn 500 (678)
T KOG1180|consen 433 GYGLTETCAAATVLEPE-----------DFSTGRVGAPLPCC-EIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKN 500 (678)
T ss_pred cccccchhcccEecChh-----------hcccccccCCccce-EEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCC
Confidence 99999999888775422 22237899999999 6999998766655555445799999999999999999
Q ss_pred cchhhhhh--cCC--eeecCceeEEcCCCeEEEecccCceEE-eCceeechHHHHHHHhcCCCceeeEEEeecCCCCCce
Q 008342 420 PKANEEAF--ANG--WFHSGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 494 (569)
Q Consensus 420 ~~~~~~~~--~~g--~~~tGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~ 494 (569)
++.+.+.| .+| ||+|||+|++++||+|.+..|.+|++| .+|+.|.+..||++++..|.|.+.+|.+..... .
T Consensus 501 ~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s---~ 577 (678)
T KOG1180|consen 501 EEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKS---K 577 (678)
T ss_pred hhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccc---e
Confidence 99999999 378 999999999999999999999999999 899999999999999999999999999876654 6
Q ss_pred eeEEEEecCCcchh----------hhh----------hHHHHHHHHH-HhcCCCCcCCceEEeccCCC-------CCCCc
Q 008342 495 PCAFVTLKPEADEL----------DKG----------KLAEDVSKFC-RAKMPSYWVPKSVVFAALPK-------SATGK 546 (569)
Q Consensus 495 ~~~~v~~~~~~~~~----------~~~----------~~~~~l~~~~-~~~l~~~~~p~~i~~~~lP~-------t~~GK 546 (569)
++++|++.+..-.. +.+ +..++|.+.- .++|..+.+|..|++.+.|= |+.-|
T Consensus 578 ~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~K 657 (678)
T KOG1180|consen 578 PVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALK 657 (678)
T ss_pred eEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHH
Confidence 89999988753210 000 1223333333 44588999999999877553 55669
Q ss_pred ccHHHHHHHHHhcC
Q 008342 547 IQKHLLRAKAKEMG 560 (569)
Q Consensus 547 i~r~~l~~~~~~~~ 560 (569)
+.|+.++..|++..
T Consensus 658 LKRk~I~~~~k~ei 671 (678)
T KOG1180|consen 658 LKRKEILAAYKKEI 671 (678)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999888653
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-58 Score=465.99 Aligned_cols=406 Identities=18% Similarity=0.209 Sum_probs=348.2
Q ss_pred eeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCC
Q 008342 38 SVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHAS 117 (569)
Q Consensus 38 a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 117 (569)
++++.++++||.||.++++++|+.|. .|+++|++|+++++|+++++++++||+++|++++|+++..+.+++..++++++
T Consensus 1 ~~~~~~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~ 79 (414)
T PRK08308 1 MLIVNDEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAG 79 (414)
T ss_pred CeEecCceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCC
Confidence 46788899999999999999999985 68999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCce
Q 008342 118 SAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQS 197 (569)
Q Consensus 118 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 197 (569)
++.+++++.... .. . .....++++
T Consensus 80 ~~~~i~~~~~~~--------~~----------------~--------------------------------~~~~~~~~~ 103 (414)
T PRK08308 80 CHGLLYGESDFT--------KL----------------E--------------------------------AVNYLAEEP 103 (414)
T ss_pred CCEEEecCcccc--------cc----------------c--------------------------------CCCCCCCCc
Confidence 999998763100 00 0 001345689
Q ss_pred EEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHH-HHHHHHhcceEEEeccCChHHHH
Q 008342 198 IALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQVTAKAVY 276 (569)
Q Consensus 198 ~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~ 276 (569)
++++|||||||.||+|.+||+++..........+.+..+|+++..+|++|.+|+.. .+..+..|+++++...+++..++
T Consensus 104 ~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~ 183 (414)
T PRK08308 104 SLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFAL 183 (414)
T ss_pred eEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHH
Confidence 99999999999999999999999988888778888899999999999999999854 45555678888888888999999
Q ss_pred HHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCCeEecccccccCCCCccccccC
Q 008342 277 TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWK 356 (569)
Q Consensus 277 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~ 356 (569)
+.++++++|++.++|+++..+.+.... ..+++.++++|+++++++.+++++.+.++++.||+||++.+.....
T Consensus 184 ~~l~~~~~t~~~~~P~~~~~l~~~~~~-----~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-- 256 (414)
T PRK08308 184 NILRNTPQHILYAVPLMLHILGRLLPG-----TFQFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGCVSICPD-- 256 (414)
T ss_pred HHHHHhCCeEEEcCHHHHHHHHhcCCc-----cccccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCCeeecCC--
Confidence 999999999999999999999876432 2367889999999999999999877889999999999985332211
Q ss_pred CCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeecCc
Q 008342 357 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGD 436 (569)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD 436 (569)
.....++|.|.+++ ++++.+.+ + +.||+++++. ++||+|||
T Consensus 257 -----------~~~~~~~G~p~~~~-~~~~~~~~-------~--~~gel~v~~~------------------~~~~~TGD 297 (414)
T PRK08308 257 -----------MKSHLDLGNPLPHV-SVSAGSDE-------N--APEEIVVKMG------------------DKEIFTKD 297 (414)
T ss_pred -----------CCCCCccCccCCCe-EEEEecCC-------C--CCceEEEEcC------------------CceEECCc
Confidence 01236789999998 58776532 2 5699999752 57999999
Q ss_pred eeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHH
Q 008342 437 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAED 516 (569)
Q Consensus 437 ~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~ 516 (569)
+++++++|.+++.||.||+|+++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++++..... ..++
T Consensus 298 l~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~~-------~~~~ 370 (414)
T PRK08308 298 LGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEEI-------DPVQ 370 (414)
T ss_pred eEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCC-------CHHH
Confidence 999999999999999999999999999999999999999999999999999998889998888866432 3478
Q ss_pred HHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHH
Q 008342 517 VSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLR 553 (569)
Q Consensus 517 l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~ 553 (569)
+.++++++|+.|++|..+.+++ ||+|++||++|+.|+
T Consensus 371 l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 371 LREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLLE 408 (414)
T ss_pred HHHHHHHhCccccCCcEEEEeccCCCCCCcCeehhhhh
Confidence 8999999999999999999877 999999999999654
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=481.51 Aligned_cols=494 Identities=21% Similarity=0.225 Sum_probs=375.9
Q ss_pred CHHHHHHHhhhhCCCceeeeeCC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 21 TPLWFINRAATLHPTRKSVVYGS--KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 21 ~l~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
++.+.|..+|..+|+.+++...+ +.+||.||+++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~ 82 (545)
T PRK07768 3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT 82 (545)
T ss_pred hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence 57788889999999999996654 6899999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCHHHH-------HHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcc
Q 008342 99 SINIRLNATVV-------AFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARG 171 (569)
Q Consensus 99 ~l~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (569)
++++..+.+++ ..+++.++++.+++++........... ....
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----------~~~~--------------------- 131 (545)
T PRK07768 83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE----------KGIR--------------------- 131 (545)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc----------cCCc---------------------
Confidence 99988776544 456777899999998765432221100 0001
Q ss_pred hhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCC-cEEEEcCCccchhh
Q 008342 172 AIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEG-AVFLWTLPMFHGNG 250 (569)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~-d~~~~~~p~~~~~g 250 (569)
...+++++..... ......++++++++|||||||.||+|.++|+++..........+++..+ |++++.+|++|..+
T Consensus 132 ~~~~~~l~~~~~~---~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 208 (545)
T PRK07768 132 VLTVADLLAADPI---DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMG 208 (545)
T ss_pred eeehhhhcccCCC---CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchH
Confidence 1233333332211 1123457899999999999999999999999998888777777788876 89999999999999
Q ss_pred HHHHHHH-HHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccCC----CCCCCCcccceeeeecCCC
Q 008342 251 WSYTWSL-AALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASP----EDTILPLTNVVNVNTAGAP 321 (569)
Q Consensus 251 ~~~~~~~-~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~----~~~~~~l~~l~~~~~~g~~ 321 (569)
+...+.. +..|++.+.... .++..+.+.+++++++++.+.|.++..+..... ..... ++++|.++++|++
T Consensus 209 ~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~lr~~~~~g~~ 287 (545)
T PRK07768 209 MVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFD-LSSLRFALNGAEP 287 (545)
T ss_pred HHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCC-chheeeEEeccCC
Confidence 8765554 455665555543 367889999999999999888887776654321 11223 7899999999999
Q ss_pred CCHHHHHHhhh----cCC---eEecccccccCCCCccccccCCCC-------CCC-------C-chhhhhccccCCceee
Q 008342 322 PPPSLLFAMSQ----KGF---RITHTYGLTELTGPASVCAWKPEW-------DSL-------P-FETQARLNARQGVRTI 379 (569)
Q Consensus 322 l~~~~~~~~~~----~~~---~i~~~YG~tE~~~~~~~~~~~~~~-------~~~-------~-~~~~~~~~~~~G~~~~ 379 (569)
+++.+.+++.+ +|. .+++.||+||++..++........ ... + .........++|.|.+
T Consensus 288 ~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 367 (545)
T PRK07768 288 IDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLP 367 (545)
T ss_pred CCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCC
Confidence 99999988865 344 499999999998655443221110 000 0 0001223467999999
Q ss_pred ccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeC
Q 008342 380 CLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISG 459 (569)
Q Consensus 380 ~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~ 459 (569)
++ +++++|++ +++++.+ +.|||+++|+.++.||++.+......+.+|||+|||+++++++|.++++||.||+|+.+
T Consensus 368 g~-~~~i~~~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~ 443 (545)
T PRK07768 368 GL-EVRVVDED-GQVLPPR--GVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMA 443 (545)
T ss_pred CC-EEEEECCC-CCCCCCC--CEEEEEEccCcccccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEEC
Confidence 99 69999965 8888877 78999999999999999876655555568899999999999999999999999999999
Q ss_pred ceeechHHHHHHHhcCCCceeeEEEeec--CCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCC--cCCceEE
Q 008342 460 GENISSVEVEKVLYLHPLVLEAAVVARP--DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY--WVPKSVV 535 (569)
Q Consensus 460 G~~v~~~~iE~~l~~~~~v~~~~v~~~~--~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~--~~p~~i~ 535 (569)
|.++++.+||..|.++|+|.+++|++.. +...++...++++....... ....++.+++++.+..+ .+|..+.
T Consensus 444 G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~l~~~~~~~l~~~~~~~p~~v~ 519 (545)
T PRK07768 444 GRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFEDP----AEVRRIRHQVAHEVVAEVGVRPRNVV 519 (545)
T ss_pred CEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEecccccH----HHHHHHHHHHHHHHHHHhCCCccEEE
Confidence 9999999999999999999998777654 33334555555544433222 13345666666655433 5787776
Q ss_pred ec---cCCCCCCCcccHHHHHHHHH
Q 008342 536 FA---ALPKSATGKIQKHLLRAKAK 557 (569)
Q Consensus 536 ~~---~lP~t~~GKi~r~~l~~~~~ 557 (569)
++ +||+|++||++|+.|+++|.
T Consensus 520 ~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 520 VLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred EeCCCcCCCCCchhHHHHHHHHhcC
Confidence 55 39999999999999998764
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-55 Score=416.76 Aligned_cols=501 Identities=21% Similarity=0.257 Sum_probs=395.4
Q ss_pred ccccCHHHHHHHhhhhCCCceeeeeCC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcC
Q 008342 17 YTALTPLWFINRAATLHPTRKSVVYGS--KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94 (569)
Q Consensus 17 ~~~~~l~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 94 (569)
-++.|+++++.++++++|+++|+++.+ +++||+|+++.++++|+.|...|++.||.|++.|+|.++++.++||++++|
T Consensus 74 r~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlG 153 (649)
T KOG1179|consen 74 RERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLG 153 (649)
T ss_pred ccCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhC
Confidence 457799999999999999999999987 799999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhh
Q 008342 95 AVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIE 174 (569)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (569)
++.+.+|+++..+.|.|-|..++++++|++.+..+.+.+..+.+.. ...+++..+.... ..+..+
T Consensus 154 v~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~------~~i~~~~~~~~~~---------~~g~~~ 218 (649)
T KOG1179|consen 154 VITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIK------NGIHVFSLGPTSV---------PDGIES 218 (649)
T ss_pred ceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhh------ccceEEecCCCCC---------CchHHH
Confidence 9999999999999999999999999999999988777776444431 2344455543321 223345
Q ss_pred HHhhhhcCCCCC---CCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhH
Q 008342 175 YEKFLETGDPEF---AWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 251 (569)
Q Consensus 175 ~~~~l~~~~~~~---~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 251 (569)
+...++.....+ .........++++.+|||||||.||+.++||......+......++++++|+++..+|++|..|.
T Consensus 219 L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ 298 (649)
T KOG1179|consen 219 LLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAG 298 (649)
T ss_pred HHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHH
Confidence 555555544443 22234577789999999999999999999999988888778889999999999999999999988
Q ss_pred HHHHHH-HHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHh
Q 008342 252 SYTWSL-AALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAM 330 (569)
Q Consensus 252 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~ 330 (569)
...... +..|+++++-.+|+...+|+...+|++|++.-...+.+.|++.+...... --.+| +.-|..+.+++++.|
T Consensus 299 ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er-~HkVR--la~GNGLR~diW~~F 375 (649)
T KOG1179|consen 299 ILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEER-QHKVR--LAYGNGLRPDIWQQF 375 (649)
T ss_pred HHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhc-CceEE--EEecCCCCchHHHHH
Confidence 766555 45566666668899999999999999999999999999999997765443 33444 445666888888888
Q ss_pred h-hcCC-eEecccccccCCCCccccccCCCCCCCCchhhhhccccCCc------eeeccCCceeeeCCC--------Ccc
Q 008342 331 S-QKGF-RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGV------RTICLDGLDVIDART--------NQP 394 (569)
Q Consensus 331 ~-~~~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~------~~~~~~~~~i~d~~~--------~~~ 394 (569)
. ++|. +|.+.||+||..........+ .+.+|. .+..+ ++--.|+++ |-.
T Consensus 376 v~RFg~~~IgE~YgaTEgn~~~~N~d~~--------------vGA~G~~~~~~~~l~p~-~LIk~D~~t~E~iRd~~G~C 440 (649)
T KOG1179|consen 376 VKRFGIIKIGEFYGATEGNSNLVNYDGR--------------VGACGFMSRLLKLLYPF-RLIKVDPETGEPIRDSQGLC 440 (649)
T ss_pred HHHcCCCeEEEEeccccCcceeeeecCc--------------cccccchhhhhhhccce-EEEEecCCCCceeecCCceE
Confidence 7 5665 599999999986443332111 111111 11111 122233333 444
Q ss_pred cCCCCCceEEEEEe--cCcc---cccccCCcchhhhhh-----c--CCeeecCceeEEcCCCeEEEecccCceEEeCcee
Q 008342 395 VPADGKTIGEIVMR--GSCV---MKGYLKNPKANEEAF-----A--NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGEN 462 (569)
Q Consensus 395 ~~~~~~~~Gel~v~--~~~~---~~gy~~~~~~~~~~~-----~--~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~ 462 (569)
+++..+|.|.++-+ ...- +.||.+....+.... . |-||+|||+-.+|+.|++||..|..|.++..|++
T Consensus 441 i~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGEN 520 (649)
T KOG1179|consen 441 IPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGEN 520 (649)
T ss_pred EECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCc
Confidence 44444588866543 2223 789998666665543 2 4599999999999999999999999999999999
Q ss_pred echHHHHHHHhcCCCceeeEEEeecCCCC-CceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CC
Q 008342 463 ISSVEVEKVLYLHPLVLEAAVVARPDERW-GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LP 540 (569)
Q Consensus 463 v~~~~iE~~l~~~~~v~~~~v~~~~~~~~-g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP 540 (569)
|+..|||++|..+..+.|+.|.|+.-+.. |..=.|.|+..+.... +...+-+.+++.||+|.+|.++.+.+ |+
T Consensus 521 VsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~-----d~~~l~~~l~~~LP~YA~P~FlRl~~~i~ 595 (649)
T KOG1179|consen 521 VSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEK-----DLEKLYQHLRENLPSYARPRFLRLQDEIE 595 (649)
T ss_pred ccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcccc-----hHHHHHHHHHhhCccccchHHHHHHhhhh
Confidence 99999999999999999999999976654 3333566666666555 78899999999999999999999887 99
Q ss_pred CCCCCcccHHHHHHH
Q 008342 541 KSATGKIQKHLLRAK 555 (569)
Q Consensus 541 ~t~~GKi~r~~l~~~ 555 (569)
+|.+=|..+..|.+.
T Consensus 596 ~TgTFKl~K~~L~~e 610 (649)
T KOG1179|consen 596 KTGTFKLQKTELQKE 610 (649)
T ss_pred cccchhhHHHHHHHc
Confidence 999999999988754
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=450.06 Aligned_cols=400 Identities=26% Similarity=0.395 Sum_probs=315.0
Q ss_pred HHHhhhhCCCceeeee-CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccC
Q 008342 26 INRAATLHPTRKSVVY-GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRL 104 (569)
Q Consensus 26 l~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~ 104 (569)
|+++|+++||++|+++ .++.+||+||+++++++|..|.++|+++|++|+++++|+++++++++||+++|++++|++|.+
T Consensus 1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~ 80 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSL 80 (417)
T ss_dssp HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS
T ss_pred ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccc
Confidence 6899999999999999 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCceEEEEc--ccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhhcC
Q 008342 105 NATVVAFILSHASSAVVIVD--QEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETG 182 (569)
Q Consensus 105 ~~~~l~~~l~~~~~~~vi~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (569)
+.+++.++++.++++++|++ .+... +......... ......++.++......... ..........
T Consensus 81 ~~~~~~~~l~~~~~~~ii~~~~~d~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 147 (417)
T PF00501_consen 81 SEDELRHILRQSGPKVIITSEAVDSEP-LKKLKSIFKQ----EDPSSSIIILDRDDLPKKEA--------LKSASLSDEP 147 (417)
T ss_dssp SHHHHHHHHHHHTESEEEECHHHSCHH-HHHHHHHHTT----STTTEEEEEESHSSCTTCHH--------HHHHHHCHCS
T ss_pred ccccccccccccceeEEEEeccccccc-cccchhhhcc----cccccccccccccccccccc--------cccccccccc
Confidence 99999999999999999981 01111 2222111110 00234455555433211100 0000000000
Q ss_pred CCCCCCCCC-CCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhH--hHhCCCCCcEEEEcCCccchhhH-HHHHHHH
Q 008342 183 DPEFAWKPP-EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA--LIWGMNEGAVFLWTLPMFHGNGW-SYTWSLA 258 (569)
Q Consensus 183 ~~~~~~~~~-~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~--~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~~ 258 (569)
. .+ ..++++++++|||||||.||+|.++|+++++.+.... ..++++ |++++.+|++|.+|+ ...+.++
T Consensus 148 ~------~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l 219 (417)
T PF00501_consen 148 Q------SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAAL 219 (417)
T ss_dssp H------STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHH
T ss_pred c------cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccccccccc
Confidence 0 00 0457999999999999999999999999988877754 223333 599999999999999 6666666
Q ss_pred HhcceEEEeccCC---hHHHHHHHHhcCccEEeehHHHHHHHHccCCCC----CCCCcccceeeeecCCCCCHHHHHHhh
Q 008342 259 ALCGTSICLRQVT---AKAVYTAIATHGVTHFCAAPVVLNAIANASPED----TILPLTNVVNVNTAGAPPPPSLLFAMS 331 (569)
Q Consensus 259 ~~g~~~~~~~~~~---~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~----~~~~l~~l~~~~~~g~~l~~~~~~~~~ 331 (569)
..|+++++.+... ++.+++.++++++|++.++|++++.+++..... ... ++++|.++++|+++++++.++++
T Consensus 220 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~-l~~lr~v~~~G~~l~~~~~~~~~ 298 (417)
T PF00501_consen 220 FSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKD-LSSLRTVISGGEPLPPDLLRRLR 298 (417)
T ss_dssp HCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTT-GTT-SEEEEESST-CHHHHHHHH
T ss_pred cccccccccccccccccccchhcccccccccccccccccccccccccccccccccc-cccccccccccccCChhhccccc
Confidence 6777777776543 477899999999999999999999999843221 123 88899999999999999999999
Q ss_pred hc-CC-eEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEec
Q 008342 332 QK-GF-RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 409 (569)
Q Consensus 332 ~~-~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~ 409 (569)
+. +. ++++.||+||++++++.... .......+++|.|++++ +++|+|++++++++.| +.|||+++|
T Consensus 299 ~~~~~~~i~~~YG~tE~~~~~~~~~~---------~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~~g--~~Gei~i~~ 366 (417)
T PF00501_consen 299 KAFGNAPIINLYGSTETGSIATIRPP---------EDDIEKPGSVGKPLPGV-EVKIVDPNTGEPLPPG--EPGEIVIRG 366 (417)
T ss_dssp HHHTTSEEEEEEEEGGGSSEEEEEET---------TTHHSSTTSEBEESTTE-EEEEECTTTSSBESTT--SEEEEEEES
T ss_pred cccccccceecccccccceeeecccc---------ccccccccccccccccc-cccccccccccccccc--ccccccccC
Confidence 65 65 89999999999988865421 11222346889999999 6999999999999988 789999999
Q ss_pred CcccccccCCcchhhhhhcC-CeeecCceeEEcCCCeEEEecccCceEEeC
Q 008342 410 SCVMKGYLKNPKANEEAFAN-GWFHSGDLAVKHPDNYIEIKDRLKDVIISG 459 (569)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~~~-g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~ 459 (569)
++++.||+++++.+...|.+ |||+|||+|++++||+++++||.||+||++
T Consensus 367 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 367 PNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp TTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred CccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 99999999999999999976 899999999999999999999999999864
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-51 Score=416.05 Aligned_cols=393 Identities=25% Similarity=0.301 Sum_probs=327.2
Q ss_pred eHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcc
Q 008342 47 TWHQTYRRCRRFASALSK-LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 125 (569)
Q Consensus 47 Ty~el~~~~~~la~~L~~-~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (569)
||.||.+.+.++|++|.+ .|+++||+|+++++|+++++++++||+++|++++++++.++.+.+.++++.+++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccC
Q 008342 126 EFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSG 205 (569)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSG 205 (569)
+....+... ....+.+... +...................+++++++||||
T Consensus 81 ~~~~~~~~~-------------~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG 130 (408)
T TIGR01733 81 ALASRLAGL-------------VLPIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSG 130 (408)
T ss_pred chhhhcccc-------------CCceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCC
Confidence 765443221 1112222111 0000001000000111135688999999999
Q ss_pred CCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEeccC---ChHHHHHHHHhc
Q 008342 206 TTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQV---TAKAVYTAIATH 282 (569)
Q Consensus 206 sTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~---~~~~~~~~i~~~ 282 (569)
|||.||+|.+||+++..........+++.++|++++..|++|.+++...+..+..|+++++.+.. .+..+.+.++++
T Consensus 131 TtG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~ 210 (408)
T TIGR01733 131 STGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEH 210 (408)
T ss_pred CCCCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHc
Confidence 99999999999999999998888888999999999999999999998888888888888887553 368899999999
Q ss_pred CccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc-C-CeEecccccccCCCCccccccCCCCC
Q 008342 283 GVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-G-FRITHTYGLTELTGPASVCAWKPEWD 360 (569)
Q Consensus 283 ~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~-~-~~i~~~YG~tE~~~~~~~~~~~~~~~ 360 (569)
++|.+.++|.+++.+.+... .. ++++|.++++|+++++++.+.+.+. + +.+++.||+||+++++..........
T Consensus 211 ~~t~l~~~p~~~~~l~~~~~---~~-~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~ 286 (408)
T TIGR01733 211 PVTVLNLTPSLLALLAAALP---PA-LASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDA 286 (408)
T ss_pred CceEEEeCHHHHHHHHHhhh---hc-ccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCcccc
Confidence 99999999999999998765 22 7899999999999999999999854 5 89999999999987665333222111
Q ss_pred CCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcC-------C--e
Q 008342 361 SLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN-------G--W 431 (569)
Q Consensus 361 ~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------g--~ 431 (569)
. .. ...++|.|.+++ +++|+|++ +++++.+ +.|||+++|+.++.||+++++.+...|.. | |
T Consensus 287 ~-----~~-~~~~~G~~~~~~-~~~i~~~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~ 356 (408)
T TIGR01733 287 P-----RE-SPVPIGRPLANT-RLYVLDDD-LRPVPVG--VVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARL 356 (408)
T ss_pred C-----Cc-cccccCcccCCc-eEEEECCC-CCCCCCC--CceEEEecCccccccccCChhhhhcceeeCCCCCCCCceE
Confidence 0 00 257899999999 69999988 8888877 78999999999999999999888887743 2 9
Q ss_pred eecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEE
Q 008342 432 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483 (569)
Q Consensus 432 ~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 483 (569)
|+|||+++++++|++++.||.+|+++.+|++++|.+||++|.+++.|.+++|
T Consensus 357 ~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 357 YRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred EECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 9999999999999999999999999999999999999999999999998865
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-47 Score=377.28 Aligned_cols=320 Identities=23% Similarity=0.313 Sum_probs=270.4
Q ss_pred CCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEe---c
Q 008342 192 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL---R 268 (569)
Q Consensus 192 ~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~---~ 268 (569)
..++++++++|||||||.||+|.++|+++..........+ ...++++..+|++|.+|+...+..++.|++.+++ .
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~ 109 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA 109 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence 4467999999999999999999999999988776555443 3567889999999999998777777888887763 4
Q ss_pred cCChHHHHHHHHhcC--ccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCCeEecccccccC
Q 008342 269 QVTAKAVYTAIATHG--VTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTEL 346 (569)
Q Consensus 269 ~~~~~~~~~~i~~~~--~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~YG~tE~ 346 (569)
.+++..+++.+++++ .++...+|..+..++...... .. +++++.+++||+++++++.+++.+.++++++.||+||+
T Consensus 110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~~-~~-~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~TE~ 187 (358)
T PRK07824 110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAAT-AA-LAELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMSET 187 (358)
T ss_pred CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcccc-CC-cccceEEEECCCCCCHHHHHHHHhcCCcEEecccCCcc
Confidence 578999999999998 566677888887776654322 22 78999999999999999999988889999999999998
Q ss_pred CCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhh
Q 008342 347 TGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEA 426 (569)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~ 426 (569)
++.+. ..|.|.+++ ++++. .|||+++|+.++.||++++.... .
T Consensus 188 ~~~~~---------------------~~G~~~~g~-~v~i~--------------~Gei~v~g~~~~~gY~~~~~~~~-~ 230 (358)
T PRK07824 188 SGGCV---------------------YDGVPLDGV-RVRVE--------------DGRIALGGPTLAKGYRNPVDPDP-F 230 (358)
T ss_pred CCCcC---------------------cCceeCCCC-EEEec--------------CCEEEEecCccccccCCCccccc-c
Confidence 75321 247777777 46662 19999999999999998876432 2
Q ss_pred hcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcc
Q 008342 427 FANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEAD 506 (569)
Q Consensus 427 ~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~ 506 (569)
..+|||+|||++++ ++|.+++.||.||+|+.+|.+|+|.+||.+|.++|.|.+|+|++.+++..|+.++++++...+..
T Consensus 231 ~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~ 309 (358)
T PRK07824 231 AEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPA 309 (358)
T ss_pred cCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCC
Confidence 25789999999999 79999999999999999999999999999999999999999999999888999999987765433
Q ss_pred hhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 507 ELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 507 ~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
. ..++|++++++.++.+++|..+.+++ ||+|++||++|++|+++|.+
T Consensus 310 ~-----~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 310 P-----TLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred c-----CHHHHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence 3 56889999999999999999999877 99999999999999999865
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=413.07 Aligned_cols=481 Identities=14% Similarity=0.077 Sum_probs=350.7
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeC---C--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhc
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYG---S--KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMA 93 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~---~--~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 93 (569)
-.|+.++|++.++++|+++|+... + +.+||+|+.+++.++|++|.++|+++||+|+|+++|+++|+++.+||+++
T Consensus 426 ~~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~ 505 (1452)
T PTZ00297 426 VRSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALY 505 (1452)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 358999999999999999999742 3 67999999999999999999999999999999999999999999999999
Q ss_pred CceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchh-hhHHhhhcch
Q 008342 94 GAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSK-QLEYALARGA 172 (569)
Q Consensus 94 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~ 172 (569)
|++.+|+++ +.+++.+++++++++++|++.+....+..... + ..++++++++...... ..+.......
T Consensus 506 GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~-------~Lr~IIv~d~~~~~~~~~~~~~~~i~~ 574 (1452)
T PTZ00297 506 GFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS--R-------KLETVVYTHSFYDEDDHAVARDLNITL 574 (1452)
T ss_pred CCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--c-------CCcEEEEECCCcccccccccccCCcce
Confidence 999999975 46789999999999999998776554443211 1 4678888864211000 0000001124
Q ss_pred hhHHhhhhcCCCCC-CCCCCCCcCceEEEEe---ccCCCCCCcceeecchHHHHHHHHhHhHh---CCCCCcEEEEcCCc
Q 008342 173 IEYEKFLETGDPEF-AWKPPEDEWQSIALGY---TSGTTASPKGVVVSHRGAYLMSLNGALIW---GMNEGAVFLWTLPM 245 (569)
Q Consensus 173 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~---TSGsTG~pk~v~~t~~~~~~~~~~~~~~~---~~~~~d~~~~~~p~ 245 (569)
++|++++..+.... +......+++++.|+| ||||||.||||++||+|++..+....... ...++|++++.+|+
T Consensus 575 ~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPL 654 (1452)
T PTZ00297 575 IPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPF 654 (1452)
T ss_pred eeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechH
Confidence 67888887653211 1122346788998885 99999999999999999999888765432 35678999999999
Q ss_pred cchhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCC--------------------
Q 008342 246 FHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT-------------------- 305 (569)
Q Consensus 246 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-------------------- 305 (569)
+|+++....+.++..|+++.. +++..+++.|++++||++.++|.+|+.+.+......
T Consensus 655 aHI~er~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~ 731 (1452)
T PTZ00297 655 AMLFNRVFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSR 731 (1452)
T ss_pred HHHHHHHHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 999997666666566666543 478999999999999999999999997765421100
Q ss_pred ------CCC---------------cccceeeeecCC--CCCHHHHHHhhhcCCeEecccccccCCCCccccccCCCCCCC
Q 008342 306 ------ILP---------------LTNVVNVNTAGA--PPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSL 362 (569)
Q Consensus 306 ------~~~---------------l~~l~~~~~~g~--~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 362 (569)
... -.++|.+++||. +++ .....+++++..||.||+. +..... .
T Consensus 732 ~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~-----~~l~~~i~i~~g~glTE~~---~~~~~~-~---- 798 (1452)
T PTZ00297 732 LINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTS-----FSLLEHISVCYVPCLREVF---FLPSEG-V---- 798 (1452)
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccC-----hHHhCCceEEEecceEEee---eecCCC-C----
Confidence 000 146888888873 444 3333467899999999953 222111 0
Q ss_pred CchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcC
Q 008342 363 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP 442 (569)
Q Consensus 363 ~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~ 442 (569)
....|.|+|++ +++|.+.+...-.+ ..|||+++ |+++++.|.+. .+||+ +
T Consensus 799 --------~~~~G~Plpgv-EvKI~~~~E~~~~~----~~GEIlvr-------~~kdpe~T~e~-~~gW~---------~ 848 (1452)
T PTZ00297 799 --------FCVDGTPAPSL-QVDLEPFDEPSDGA----GIGQLVLA-------KKGEPRRTLPI-AAQWK---------R 848 (1452)
T ss_pred --------cccCCeecCce-EEEEcccccccCCC----CCCeEEEE-------ECCChHHHHHh-hCcCc---------c
Confidence 01239999999 69998743211111 35999995 35778777763 35553 6
Q ss_pred CCeEEEecccCceEE-eCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcch--------------
Q 008342 443 DNYIEIKDRLKDVII-SGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADE-------------- 507 (569)
Q Consensus 443 ~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~-------------- 507 (569)
||+|+|.||.+|+|+ .+|++|.|+.||.++.++|.|.+++|+|...+. ++|+|++....-.
T Consensus 849 dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~----lvALVvpd~e~l~~~wa~~~gi~~~~~ 924 (1452)
T PTZ00297 849 DRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP----IIAIVSPNRDTVEFEWRQSHCMGEGGG 924 (1452)
T ss_pred CCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCc----eEEEEEeCHHHHHHHHHHHcCCCcccc
Confidence 899999999999999 899999999999999999999999999987664 8888887653211
Q ss_pred ----hhhhhHHH----HHHHHH---H--hcCCCCcCCceEEecc--C-----CCCCCCcccHHHHHHHHHhcC
Q 008342 508 ----LDKGKLAE----DVSKFC---R--AKMPSYWVPKSVVFAA--L-----PKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 508 ----~~~~~~~~----~l~~~~---~--~~l~~~~~p~~i~~~~--l-----P~t~~GKi~r~~l~~~~~~~~ 560 (569)
.+..+..+ .+.+.+ . +.+..+.+++.+.+.. + -+||+.|+.|+.+.+.|.++-
T Consensus 925 ~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~I 997 (1452)
T PTZ00297 925 PARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVI 997 (1452)
T ss_pred ccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHH
Confidence 01111111 233322 2 1256678888776643 3 279999999999999998653
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=344.01 Aligned_cols=409 Identities=22% Similarity=0.266 Sum_probs=338.1
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
..++..++.+.+...|+++|+.+.+.++||+|+..+++++|+.|.+.|+++++.|+++++.+.++++.++|++++|..++
T Consensus 226 ~~~i~~~f~~~a~~~p~~~a~~~~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yv 305 (642)
T COG1020 226 RLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYV 305 (642)
T ss_pred cchHHHHHHHHHHhCCCceeEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEe
Confidence 46899999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
|+++.++.+++..++++.+++.+++.......... ... +.++..
T Consensus 306 P~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~--------------------- 349 (642)
T COG1020 306 PLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVG--------------LPG-LALDDA--------------------- 349 (642)
T ss_pred cCCCCChHHHHHHHHhhcCccEEEecccccccccc--------------CCc-cccccc---------------------
Confidence 99999999999999999999999988432211000 000 111110
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
........+.......++.++++|||||||.||||..+|+++.....+....+.+..+|+++...++.+.......+...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l 429 (642)
T COG1020 350 LSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGAL 429 (642)
T ss_pred cccCCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHH
Confidence 00000000001223557899999999999999999999999998777777789999999999999998888888888888
Q ss_pred HhcceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCC-CCCcccceeeeecCCCCCHHHHHHhhhc-
Q 008342 259 ALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT-ILPLTNVVNVNTAGAPPPPSLLFAMSQK- 333 (569)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~l~~l~~~~~~g~~l~~~~~~~~~~~- 333 (569)
+.|+.++.... .++..+.+.+.++++|++..+|.++..+........ ......+|.+++||+.++..+..++...
T Consensus 430 ~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~ 509 (642)
T COG1020 430 LEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLA 509 (642)
T ss_pred hCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhc
Confidence 89998888743 678999999999999999999999999887622211 1113359999999999999999988754
Q ss_pred --CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCc
Q 008342 334 --GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC 411 (569)
Q Consensus 334 --~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 411 (569)
...+++.||.||+............. .. ...+|.|+++. .+.|+| +.++++|.+ ..||+++.|.+
T Consensus 510 ~~~~~l~~~ygpTe~~~~~~~~~~~~~~--------~~-~~piG~p~~n~-~~~ild-~~~~~~p~g--v~gel~i~g~~ 576 (642)
T COG1020 510 ALARRLLNLYGPTEATLDAPSFPISAEL--------ES-RVPIGRPVANT-QLYILD-QGLRPLPLG--VPGELYIAGLG 576 (642)
T ss_pred cccceEeeccCccHHhhheeeEEccccc--------CC-CCCcceeeCCC-eEEEEC-CCCCcCCCC--CCeeeEECCcc
Confidence 46899999999965544433211110 00 46899999998 699999 459999999 78999999999
Q ss_pred ccccccCCcchhhhhhcCC-eeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCC
Q 008342 412 VMKGYLKNPKANEEAFANG-WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 476 (569)
Q Consensus 412 ~~~gy~~~~~~~~~~~~~g-~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 476 (569)
+..||+++++.+..+|... +|+|||++++.++|.+.++||.|+++|++|+++.+.+||..+.++|
T Consensus 577 ~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 577 LALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642 (642)
T ss_pred hhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence 9999999999999999775 9999999999999999999999999999999999999999998765
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=314.37 Aligned_cols=287 Identities=22% Similarity=0.211 Sum_probs=224.4
Q ss_pred CceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCC--CcEEEEcCCccchhhHHHHHH-HHHhcceEEEeccCC
Q 008342 195 WQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNE--GAVFLWTLPMFHGNGWSYTWS-LAALCGTSICLRQVT 271 (569)
Q Consensus 195 ~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~--~d~~~~~~p~~~~~g~~~~~~-~~~~g~~~~~~~~~~ 271 (569)
+..++++|||||||.||+|.+||+++...+......+++.. .+++++.+|++|.+|+.+.+. .+..|++++....++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~ 174 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP 174 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence 35788999999999999999999999988877777777643 468999999999999865544 445566776667788
Q ss_pred hHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCC-eEecccccccCCCCc
Q 008342 272 AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGF-RITHTYGLTELTGPA 350 (569)
Q Consensus 272 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~-~i~~~YG~tE~~~~~ 350 (569)
+..+++.++.+ |++.++|++++.+.+... . +++++. ++||+++++++.+.+++.+. ++++.||+||+++++
T Consensus 175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~~----~-l~slr~-i~gGa~l~~~l~~~~~~~g~~~v~~~YG~TEt~~i~ 246 (386)
T TIGR02372 175 ASGIMRHARPG--DLIVGTPFIWEQLADLDY----R-LPGVVG-VSSGAPSTAATWRCLLAAGLARLLEVYGATETGGIG 246 (386)
T ss_pred hHHHHHhhccC--CEEEECcHHHHHHHhhCc----C-CCccee-EecCCCCCHHHHHHHHHhcccchhheeccccccccc
Confidence 88888887654 899999999999987531 2 567775 67899999999999987764 699999999998755
Q ss_pred cccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcCC
Q 008342 351 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG 430 (569)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g 430 (569)
+.... ...|.+.++. ++.+ ++ +. + .|+ ..
T Consensus 247 ~~~~~----------------~~~~~~~p~~-~~~~--~~-~~----------~---~g~------------------~~ 275 (386)
T TIGR02372 247 LREAP----------------DDPFRLLPDL-ACFA--DT-LS----------S---AGL------------------AR 275 (386)
T ss_pred cccCC----------------CCCcccCCCc-cccC--CC-cc----------C---CCc------------------cc
Confidence 43211 1234455544 2221 11 10 0 011 12
Q ss_pred eeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhh
Q 008342 431 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDK 510 (569)
Q Consensus 431 ~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~ 510 (569)
|++|||+++++++|++++.||.||+|+++|++|+|.+||+.|.+||.|.+++|.. .++.+.++|++.++...
T Consensus 276 ~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~--- 347 (386)
T TIGR02372 276 RLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADE--- 347 (386)
T ss_pred eeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCCh---
Confidence 5889999999999999999999999999999999999999999999999998853 35678888888754322
Q ss_pred hhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCccc
Q 008342 511 GKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQ 548 (569)
Q Consensus 511 ~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~ 548 (569)
....++|.++++++++.|++|..+.+.+ ||+|++||++
T Consensus 348 ~~~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 348 AELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence 1245789999999999999999999877 9999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=310.29 Aligned_cols=323 Identities=19% Similarity=0.185 Sum_probs=237.2
Q ss_pred CcCceEEEEeccCCCCCCcceeecchHHHHHHHHh---HhHhCCCCCcEEEEcCCccchhh-HHHHHHHHHhcceEEEec
Q 008342 193 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNG---ALIWGMNEGAVFLWTLPMFHGNG-WSYTWSLAALCGTSICLR 268 (569)
Q Consensus 193 ~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g-~~~~~~~~~~g~~~~~~~ 268 (569)
..++.+.+++||||||.||++.++|.++....... ...+++.++|++++..++.+..+ +...+.....|++++.+.
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 44578889999999999999999999986654332 33468889999988766544333 333344455677777666
Q ss_pred cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCC-CcccceeeeecCCCCCHHHHHHhhh-cCCeEecccccccC
Q 008342 269 QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTEL 346 (569)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~l~~~~~~g~~l~~~~~~~~~~-~~~~i~~~YG~tE~ 346 (569)
..+++.+++.|++++||++.++|+++..|++........ ...++|.++++|+++++++.+.+.+ +|+++++.||+||+
T Consensus 153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~ 232 (422)
T TIGR02155 153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEV 232 (422)
T ss_pred CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhh
Confidence 677899999999999999999999999888654322211 1358999999999999999999884 49999999999998
Q ss_pred CC--CccccccCCCCCCCCchhhhhccccCCceee--ccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcch
Q 008342 347 TG--PASVCAWKPEWDSLPFETQARLNARQGVRTI--CLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKA 422 (569)
Q Consensus 347 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~--~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~ 422 (569)
++ +...|.. ...|.+++ .+ .++|+|++++++++.| +.|||++++..
T Consensus 233 ~~~~~~~~~~~----------------~~~g~~~~~~~~-~~eivd~~~g~~v~~G--e~Gelvvt~~~----------- 282 (422)
T TIGR02155 233 IGPGVAMECVE----------------TQDGLHIWEDHF-YPEIIDPHTGEVLPDG--EEGELVFTTLT----------- 282 (422)
T ss_pred cCCceeecccc----------------cCCCceEecCee-EEEEECCCCCCCCCCC--CeeEEEEecCC-----------
Confidence 53 2222210 01122332 23 4789998789999888 78999999742
Q ss_pred hhhhhcCCeeecCceeEEcCC-C-----eEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceee
Q 008342 423 NEEAFANGWFHSGDLAVKHPD-N-----YIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC 496 (569)
Q Consensus 423 ~~~~~~~g~~~tGD~~~~~~~-g-----~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 496 (569)
...|..+||+|||+++++++ | .+++.||.+|+|+++|.+|+|.+||.+|.++|.|....++........+.+.
T Consensus 283 -~~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~ 361 (422)
T TIGR02155 283 -KEALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELT 361 (422)
T ss_pred -ccccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEE
Confidence 23345679999999999875 4 4689999999999999999999999999999999844444444444455677
Q ss_pred EEEEecCCcc----hhhhhhHHHHHHHHHHhcCCCCcCCceEEec---cCCCCCCCcccHH
Q 008342 497 AFVTLKPEAD----ELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA---ALPKSATGKIQKH 550 (569)
Q Consensus 497 ~~v~~~~~~~----~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~---~lP~t~~GKi~r~ 550 (569)
+.++...+.. .++.....++|.+.+++.+..+. .+.+. +||+|+ ||+.|.
T Consensus 362 ~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 362 LKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSM---DVHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred EEEEEecCcccccchHHHHHHHHHHHHHHHhccCcEE---EEEEECCCCccCCC-CCceEE
Confidence 7777664431 12223346788889988887653 24433 399988 999863
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=288.33 Aligned_cols=505 Identities=18% Similarity=0.145 Sum_probs=331.2
Q ss_pred CHHHHHHHhhhhCCCceeeeeC---C-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhh
Q 008342 21 TPLWFINRAATLHPTRKSVVYG---S-----KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPM 92 (569)
Q Consensus 21 ~l~~~l~~~a~~~p~~~a~~~~---~-----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 92 (569)
++...+.+.+...|...+..+- + ..+||++.+..++.+++.|...|..+|+.|++++..+.++++..++.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~ 116 (1032)
T KOG1178|consen 37 TLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA 116 (1032)
T ss_pred chhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence 5666788888888888776542 1 6899999999999999999999999999999999999999999999999
Q ss_pred cCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcch
Q 008342 93 AGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGA 172 (569)
Q Consensus 93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (569)
.|..+++++|.++.-++...+........-..-+....++ ........ ......+. ...
T Consensus 117 ~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~-i~~~~~~~---~~~~~sv~-----------------~~~ 175 (1032)
T KOG1178|consen 117 AGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLN-IIDILLNS---LFPKLSVE-----------------TIA 175 (1032)
T ss_pred cceEEEEecCCCcccccchHHHhhhhhheeccceehhhhh-hHHHHhhc---cccccchh-----------------hcc
Confidence 9999999999999211111111111101111111111111 11100000 00000000 001
Q ss_pred hhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHH
Q 008342 173 IEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS 252 (569)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~ 252 (569)
..|..+...... ......-++..+++.||||+||.||+|..+|..++....+....+..+..+++-.....+......
T Consensus 176 ~~f~~~~~~~~~--r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~ 253 (1032)
T KOG1178|consen 176 DSFQMVLHNEDT--REIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQ 253 (1032)
T ss_pred chhhhhhccCCC--cceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchH
Confidence 112222211111 111224566788999999999999999999999999999988888888888763233332333334
Q ss_pred HHHHHHHhcceEEEe-cc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCC---------CCC---Ccccceeee
Q 008342 253 YTWSLAALCGTSICL-RQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED---------TIL---PLTNVVNVN 316 (569)
Q Consensus 253 ~~~~~~~~g~~~~~~-~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~---------~~~---~l~~l~~~~ 316 (569)
..+.++++.+..+.. .. .++.++.+.+++++++..+.+|++.+.++...... ..+ ..+.|+...
T Consensus 254 ~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~ 333 (1032)
T KOG1178|consen 254 KFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVV 333 (1032)
T ss_pred HHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeee
Confidence 444555555554444 22 34789999999999999999999988777665442 001 134799999
Q ss_pred ecCCCCCHHHHHHhhhc---CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceee--c--cCCceeeeC
Q 008342 317 TAGAPPPPSLLFAMSQK---GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTI--C--LDGLDVIDA 389 (569)
Q Consensus 317 ~~g~~l~~~~~~~~~~~---~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~--~--~~~~~i~d~ 389 (569)
.+|++..-++...+... ++.... |++++..+.+......+.-.. ........++.-.. + . ..++...
T Consensus 334 ~~~ep~~v~l~~s~~~~~~~~~~~~~-y~s~~~~~~~s~~~~~~s~~l----l~~~~v~~~p~~~~~~~~~~-~~~~~~~ 407 (1032)
T KOG1178|consen 334 LGGEPLLVSLYTSTFDLLAEIFFGLP-YLSTDPTGLVSYDDFSPSKVL----LTNENVYSVPKFDSIIGSLT-VLESLYR 407 (1032)
T ss_pred ecCCccchhhhhhhhhcccceeeeec-ccCCCCccceeHHhhCcccce----ecceeEEeccchhhccCCCc-ceeeeec
Confidence 99999999888754433 222222 888888766654432221100 00000111111111 0 0 1222222
Q ss_pred CCCcccCCC--CCceEEEEEecCcccccccCCcchhhhhh------cCCeeecCceeEEcCCCeEEEecccCceEEeCce
Q 008342 390 RTNQPVPAD--GKTIGEIVMRGSCVMKGYLKNPKANEEAF------ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGE 461 (569)
Q Consensus 390 ~~~~~~~~~--~~~~Gel~v~~~~~~~gy~~~~~~~~~~~------~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~ 461 (569)
. +.+.+.+ .++.|+-+-.+.++..| +..++.....+ .+.+|+|||.|+.-++|.+.+.||.|++||.+|.
T Consensus 408 ~-~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~ 485 (1032)
T KOG1178|consen 408 A-GGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGV 485 (1032)
T ss_pred c-CcccCCcccceeecccccccceeecc-ccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccE
Confidence 2 3333222 11222222223333344 22222222222 2448999999999889999999999999999999
Q ss_pred eechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CC
Q 008342 462 NISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LP 540 (569)
Q Consensus 462 ~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP 540 (569)
++...+|+..+..+|.|.++.+....+...++++.+|++........ ....|++++..+|+.|++|+.+++.+ +|
T Consensus 486 Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~----~~~~i~~~l~~~La~y~vPs~~V~l~~vP 561 (1032)
T KOG1178|consen 486 RIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSV----LIRDIRNYLKKELASYMLPSLVVPLAKVP 561 (1032)
T ss_pred EEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCch----hHHHHHHhhcccccceecceEEEEhhhCC
Confidence 99999999999999999999999999988899999999988776543 57889999999999999999888777 99
Q ss_pred CCCCCcccHHHHHHHHHhcC
Q 008342 541 KSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 541 ~t~~GKi~r~~l~~~~~~~~ 560 (569)
+|++||+|+++|.+......
T Consensus 562 l~~~GKvDkkaL~~~~s~~~ 581 (1032)
T KOG1178|consen 562 LNPNGKVDKKALLEYNSKLT 581 (1032)
T ss_pred cCCCCCcChhhhhhhhhhhc
Confidence 99999999999998555443
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-30 Score=260.39 Aligned_cols=513 Identities=15% Similarity=0.151 Sum_probs=349.2
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCC------eeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCchhHHHHHHHhhh
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGS------KHYTWHQTYRRCRRFASALSKL-SIGLGTTVSVIAPNVPAMYEAQFGAPM 92 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~-g~~~g~~V~i~~~~~~~~~~~~lA~~~ 92 (569)
.++.++|+..+..+|+.+|+...+ .++||++|..++.+++..|+.. -+++||.|++++++++|++++++||+.
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly 849 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY 849 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence 689999999999999999998754 7899999999999999999975 479999999999999999999999999
Q ss_pred cCceEeeccccCC------HHHHHHHHhcCCceEEEEcccchHHHHH--HHHHHhhhcCCCCCcCeEEEecCCCcchhhh
Q 008342 93 AGAVLNSINIRLN------ATVVAFILSHASSAVVIVDQEFFSLAEE--ALKMMEANSEGKLKTPHLIVIGDESCDSKQL 164 (569)
Q Consensus 93 ~G~~~v~l~~~~~------~~~l~~~l~~~~~~~vi~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (569)
+|++++|+.|.-. -..+..+++.+++..|+++......++. +..+.... -.+.++++++..
T Consensus 850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s-----~~p~i~~~~~~~------ 918 (1363)
T KOG3628|consen 850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQS-----AIPLILVLPKLP------ 918 (1363)
T ss_pred cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhh-----cchhhhcccccc------
Confidence 9999999987533 4667889999999999999876554432 22222100 122233333221
Q ss_pred HHhhhcchhhHHhhhhcCCC--CCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEc
Q 008342 165 EYALARGAIEYEKFLETGDP--EFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWT 242 (569)
Q Consensus 165 ~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~ 242 (569)
.++..-...-.. ......-.....+|++-+.--++|.--++.++|.++++.++.....+.+.+..-++..
T Consensus 919 --------~t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~ 990 (1363)
T KOG3628|consen 919 --------ETIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGC 990 (1363)
T ss_pred --------hhhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEE
Confidence 001111111111 1111122466789999998889999999999999999999999999988888888888
Q ss_pred CCccchhhHHHHH-HHHHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccc-----
Q 008342 243 LPMFHGNGWSYTW-SLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV----- 312 (569)
Q Consensus 243 ~p~~~~~g~~~~~-~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l----- 312 (569)
.+.+-+.|+.... +..+.|...+++++ .++..+++.|+++++.-++.+=..+....+........ ++..
T Consensus 991 ~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~en-l~~~gnn~s 1069 (1363)
T KOG3628|consen 991 SSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVEN-LSKRGNNTS 1069 (1363)
T ss_pred ecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccch-hhhhhcccc
Confidence 8887777775444 44455666666643 57899999999999999998888888777654433211 2211
Q ss_pred -eeeeecCCCCCHHHHHHhh----hcCC---eEecccccccCCCCccccccCCC----C-CC--CCc---hh------hh
Q 008342 313 -VNVNTAGAPPPPSLLFAMS----QKGF---RITHTYGLTELTGPASVCAWKPE----W-DS--LPF---ET------QA 368 (569)
Q Consensus 313 -~~~~~~g~~l~~~~~~~~~----~~~~---~i~~~YG~tE~~~~~~~~~~~~~----~-~~--~~~---~~------~~ 368 (569)
..++..-+...-.+.+-+. ..|. .+.-.|++.=-..++.....+++ + +. +.. .. ..
T Consensus 1070 ~s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~ 1149 (1363)
T KOG3628|consen 1070 SSIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHS 1149 (1363)
T ss_pred cceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCc
Confidence 1122223333333333332 2232 13333433211111111000000 0 00 000 00 00
Q ss_pred hccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcc-hhhhhh----------cCCeeecCce
Q 008342 369 RLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPK-ANEEAF----------ANGWFHSGDL 437 (569)
Q Consensus 369 ~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~-~~~~~~----------~~g~~~tGD~ 437 (569)
...-.-|...+.+ ++.|+++++..+|..| +.||||+.|.+.+.+|+...+ .....| ..+|.||||+
T Consensus 1150 l~L~dSG~~~~~~-~i~IvnPEtk~pc~dg--e~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~L 1226 (1363)
T KOG3628|consen 1150 LLLYDSGKLPVYT-DIAIVNPETKGPCRDG--ELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDL 1226 (1363)
T ss_pred cccccCCcccccc-eeEEeCCccccccccC--CcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeee
Confidence 0011136667777 5999999999999888 899999999999888875422 222223 2359999999
Q ss_pred eEEcC------C----CeEEEecccCceEEeCceeechHHHHHHHh-cCCCceeeEEEeecCCCCCceeeEEEEecCCcc
Q 008342 438 AVKHP------D----NYIEIKDRLKDVIISGGENISSVEVEKVLY-LHPLVLEAAVVARPDERWGESPCAFVTLKPEAD 506 (569)
Q Consensus 438 ~~~~~------~----g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~ 506 (569)
|++.. . ..+|++|-.++.+.++|.+.+|.+||..+. .||.|.+|+|+...+ .+++.+++..++.
T Consensus 1227 GFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~g-----lvVvviE~~gq~~ 1301 (1363)
T KOG3628|consen 1227 GFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQATG-----LVVVVIECHGQQE 1301 (1363)
T ss_pred eeeeeeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeCC-----eEEEEEEecCchh
Confidence 99853 1 359999999999999999999999998885 579999999997643 3666666665322
Q ss_pred hhhhhhHHHHHHHHHHhcCCCCcCCce-EEecc---CCCCCCCcccHHHHHHHHHhcCCccccc
Q 008342 507 ELDKGKLAEDVSKFCRAKMPSYWVPKS-VVFAA---LPKSATGKIQKHLLRAKAKEMGPVKMIK 566 (569)
Q Consensus 507 ~~~~~~~~~~l~~~~~~~l~~~~~p~~-i~~~~---lP~t~~GKi~r~~l~~~~~~~~~~~~~~ 566 (569)
..+-+--.++..|.+|.+... +.|++ +|+++.|..+|..+++.|.+++..-++.
T Consensus 1302 ------~~~LvPlIv~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~~kL~~~~v 1359 (1363)
T KOG3628|consen 1302 ------LADLVPLIVNVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLAGKLDPIYV 1359 (1363)
T ss_pred ------HhhhhHHHHHHHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHhcccceeee
Confidence 233333344555667666654 44776 9999999999999999999888765543
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=260.72 Aligned_cols=322 Identities=16% Similarity=0.101 Sum_probs=216.1
Q ss_pred CcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH---hCCCCCcEEEEcCCccchhhHHHHHHH-HHhcceEEEec
Q 008342 193 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSL-AALCGTSICLR 268 (569)
Q Consensus 193 ~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~-~~~g~~~~~~~ 268 (569)
..++++.+++||||||.||+|.+||.++.......... .++.++|+++...+..+..+....... ...|+++ +..
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~v-i~~ 162 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSI-IPE 162 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEE-EcC
Confidence 45688899999999999999999999987766554443 488999999999888766555444333 3445544 332
Q ss_pred cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCC-CcccceeeeecCCCCCHHHHHHhhh-cCCeEecccccccC
Q 008342 269 QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTEL 346 (569)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~l~~~~~~g~~l~~~~~~~~~~-~~~~i~~~YG~tE~ 346 (569)
. .....++.|+++++|.+.++|+.+..|+......... ...++|.+++||+++++++.+++.+ +|+++++.||+||+
T Consensus 163 ~-~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~ 241 (445)
T TIGR03335 163 G-KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEG 241 (445)
T ss_pred C-chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhh
Confidence 2 2346789999999999999999888777643322211 1468999999999999999988874 49999999999998
Q ss_pred CCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccc-----ccccCCcc
Q 008342 347 TGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVM-----KGYLKNPK 421 (569)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~-----~gy~~~~~ 421 (569)
+ ++..|.... ....+.+.+ .++|+|++++.++|.| +.|||++|+-+.. ...+
T Consensus 242 ~-~~~~c~~~~---------------g~h~~~d~~-~vEIvDp~~~~~vp~G--e~GELvvT~L~~~~~r~~~Pli---- 298 (445)
T TIGR03335 242 T-MCGECQAVA---------------GLHVPEDLV-HLDVYDPRHQRFLPDG--ECGRIVLTTLLKPGERCGSLLI---- 298 (445)
T ss_pred h-heEEecCCC---------------CccccCCce-EEEEEcCCCCCCCcCC--CceEEEEEecCCCCccCCceEE----
Confidence 6 333332111 111222334 5899999988889988 8999999986431 1112
Q ss_pred hhhhhhcCCeeecCceeEEc-CC----C----eEEEecccCceEEeCceeechHHHHHHHhcC---CCce-eeEEEeecC
Q 008342 422 ANEEAFANGWFHSGDLAVKH-PD----N----YIEIKDRLKDVIISGGENISSVEVEKVLYLH---PLVL-EAAVVARPD 488 (569)
Q Consensus 422 ~~~~~~~~g~~~tGD~~~~~-~~----g----~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~---~~v~-~~~v~~~~~ 488 (569)
.|+|||++++. ++ | ++...||.||+++++|.+|+|.+||++|.++ +++. +..++....
T Consensus 299 ---------RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~ 369 (445)
T TIGR03335 299 ---------NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGE 369 (445)
T ss_pred ---------EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecC
Confidence 39999999873 22 2 2445799999999999999999999999995 5554 445544333
Q ss_pred CCCCceeeEEEEecCCcchhhhhhHHHHHHHH-------HHhcCCCCcCCceEEecc---CCCC-CCCcccH
Q 008342 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKF-------CRAKMPSYWVPKSVVFAA---LPKS-ATGKIQK 549 (569)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~-------~~~~l~~~~~p~~i~~~~---lP~t-~~GKi~r 549 (569)
......+.+.++..+.... +.+...+++.+. +++.+....+...+.+++ ||++ +.||..|
T Consensus 370 ~~~~~~~~v~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r 440 (445)
T TIGR03335 370 EEGEITLRVSLECEDKDNC-SIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR 440 (445)
T ss_pred CCCCceEEEEEEecCcccc-hHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence 2223356666666554321 111122333332 111121222333344443 9998 4688765
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-28 Score=231.10 Aligned_cols=323 Identities=20% Similarity=0.235 Sum_probs=232.7
Q ss_pred CCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH---hCCCCCcEEEEcCCcc-chhhHHHHHHHHHhcceEEEe
Q 008342 192 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMF-HGNGWSYTWSLAALCGTSICL 267 (569)
Q Consensus 192 ~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~---~~~~~~d~~~~~~p~~-~~~g~~~~~~~~~~g~~~~~~ 267 (569)
...++...|-.||||||+|+.+.+|+..+..++....+. .+...+|++..+.... +..|+..-..+--.|.+++..
T Consensus 87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~ 166 (438)
T COG1541 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI 166 (438)
T ss_pred ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence 345566779999999999999999999987776665554 4788999987665521 222222222333355555555
Q ss_pred ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCC-CcccceeeeecCCCCCHHHHHHhh-hcCCeEeccccccc
Q 008342 268 RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTE 345 (569)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE 345 (569)
..-+-+.-+++++++++|++.++|+.+..|+......... .-.+++.+++|+|+.++++++.+. .+|+.+++.||+||
T Consensus 167 ~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE 246 (438)
T COG1541 167 SGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTE 246 (438)
T ss_pred CCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhCCceeecccccc
Confidence 5567789999999999999999999999999887665311 145899999999999999999999 55999999999999
Q ss_pred CCCCc-cccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhh
Q 008342 346 LTGPA-SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424 (569)
Q Consensus 346 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~ 424 (569)
..+.. ..|..... ....-+.+ .++|+|+++++.++.| +.|||++|.-..
T Consensus 247 ~~g~g~~eC~~~~g---------------lhi~eD~~-~~Ei~dP~t~e~l~dg--e~GelV~T~L~~------------ 296 (438)
T COG1541 247 GFGPGAGECTERNG---------------LHIWEDHF-IFEIVDPETGEQLPDG--ERGELVITTLTK------------ 296 (438)
T ss_pred ccCCcccccccccC---------------CCcchhhc-eeeeecCCcCccCCCC--CeeEEEEEeccc------------
Confidence 98773 55543321 11122233 6999999999999998 789999998531
Q ss_pred hhhcCCeeecCceeEEcCC----C-----eEEEecccCceEEeCceeechHHHHHHHhcCCCce-eeEEEeecCCCCCce
Q 008342 425 EAFANGWFHSGDLAVKHPD----N-----YIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL-EAAVVARPDERWGES 494 (569)
Q Consensus 425 ~~~~~g~~~tGD~~~~~~~----g-----~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~-~~~v~~~~~~~~g~~ 494 (569)
..+.-=.|+|||++.+.++ | ...+.||+||++.+.|.+|+|..||.+|.+.+.+. +.+++... ++..+.
T Consensus 297 ~~~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~ 375 (438)
T COG1541 297 EGMPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDE 375 (438)
T ss_pred cCcceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCce
Confidence 1111113999999999864 2 25699999999999999999999999999999998 77777666 555567
Q ss_pred eeEEEEecCCcch-hhhhhHHHHHHHHHHhcCCCCcCCceEEecc---CCCCCCCcccH
Q 008342 495 PCAFVTLKPEADE-LDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA---LPKSATGKIQK 549 (569)
Q Consensus 495 ~~~~v~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~---lP~t~~GKi~r 549 (569)
+.+.|++.++... .+...+..++.+.+...+. ....+.++. +|+|. ||..|
T Consensus 376 L~V~vE~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~v~~v~~g~l~r~~-~K~kr 430 (438)
T COG1541 376 LTVRVELENEAEELEDERRLAKKLIKNIKSELG---VRVEVELVEPGELPRTE-GKAKR 430 (438)
T ss_pred EEEEEEecCcccchHHHHHHHHHHHHHHHhhcC---CceEEEEEeccceeccc-CceeE
Confidence 8888888765221 1111123445555554443 333444443 99995 46543
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-26 Score=208.32 Aligned_cols=218 Identities=13% Similarity=0.093 Sum_probs=163.1
Q ss_pred HHHhhhhCCCceeeeeC-C-----eeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 26 INRAATLHPTRKSVVYG-S-----KHYTWHQTYRRCRRFASALSK-LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 26 l~~~a~~~p~~~a~~~~-~-----~~~Ty~el~~~~~~la~~L~~-~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
|+..++.+|+++|+++. + +++||+||.++++++|++|.+ .|+++||+|+|+++|++++++++|||+++|++++
T Consensus 2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v 81 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV 81 (227)
T ss_pred hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 57788899999999753 2 369999999999999999998 7999999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
|++ .+++++++++++....... ...++.+......... ......+..+|.+.
T Consensus 82 p~n-------------~s~a~~~v~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 133 (227)
T TIGR03089 82 LAG-------------DPDADVVVTGPDRLAAAAG--------------SGEVVALSLDPLGRRV-AGELPPGVIDFAPE 133 (227)
T ss_pred eCC-------------CCCCCEEEeCcchhhhccc--------------CCceEEEeccccccCC-CCCCCCcccchhhh
Confidence 995 6789999999876555320 1233333211000000 00001233466666
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHH-HHHH
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSL 257 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~ 257 (569)
+..............++|++.++||||+ +|++++... ...+++++|+++ .+|++|.+|+.. .+..
T Consensus 134 ~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~ 199 (227)
T TIGR03089 134 VRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAP 199 (227)
T ss_pred hhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHH
Confidence 6543332222113456899999999986 566655544 566789999999 999999999965 5556
Q ss_pred HHhcceEEEeccCChHHHHHHHHhcCcc
Q 008342 258 AALCGTSICLRQVTAKAVYTAIATHGVT 285 (569)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~~~~i~~~~~t 285 (569)
+..|+++++.++|++..+++.|+++|||
T Consensus 200 l~~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 200 LAAGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred hccCceEEEecCCCHHHHHHHHHhhcCC
Confidence 6678888888999999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-21 Score=185.73 Aligned_cols=119 Identities=20% Similarity=0.248 Sum_probs=107.8
Q ss_pred hhcCCeeecCceeEE-cCCCeEEEecccCceEEeCc---eeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEe
Q 008342 426 AFANGWFHSGDLAVK-HPDNYIEIKDRLKDVIISGG---ENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTL 501 (569)
Q Consensus 426 ~~~~g~~~tGD~~~~-~~~g~l~~~GR~~d~i~~~G---~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~ 501 (569)
.|.+|||+|||+|++ |++|+++|.||.+ +| ++|+|. ||++|.+||+|.+|+|++.+++.+|+.+.|+|++
T Consensus 205 ~~~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~ 278 (365)
T PRK09188 205 LPSRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEA 278 (365)
T ss_pred cccCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEE
Confidence 346899999999998 6999999999998 78 799999 9999999999999999999999999999999987
Q ss_pred cCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 502 KPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 502 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
.... +.++|.++|+++|+. ++|..+.+++ ||+|++||++|++|++++.+
T Consensus 279 ~~~~-------~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~ 328 (365)
T PRK09188 279 ELPA-------DEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMN 328 (365)
T ss_pred CCCC-------CHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhc
Confidence 6421 447899999999999 9999998877 99999999999999998743
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=178.50 Aligned_cols=500 Identities=14% Similarity=0.066 Sum_probs=319.5
Q ss_pred CHHHHHHHhhhhCCCceeeeeCC-----eeeeHHHHHHHHHHHHH-HHHhcCCCCCCEEEEEcCCc--hhHHHHHHHhhh
Q 008342 21 TPLWFINRAATLHPTRKSVVYGS-----KHYTWHQTYRRCRRFAS-ALSKLSIGLGTTVSVIAPNV--PAMYEAQFGAPM 92 (569)
Q Consensus 21 ~l~~~l~~~a~~~p~~~a~~~~~-----~~~Ty~el~~~~~~la~-~L~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~ 92 (569)
.+..+++..-.+++...|.++-+ ..+||..+..++.++|+ .|-+-|+.++|+|.++...+ .++++..++|..
T Consensus 95 d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l 174 (1363)
T KOG3628|consen 95 DIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFL 174 (1363)
T ss_pred chHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccc
Confidence 35566666667888888887744 67999999999999999 67778999999999998877 699999999999
Q ss_pred cCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcch
Q 008342 93 AGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGA 172 (569)
Q Consensus 93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (569)
.|.+++|+.+..+.+++..+++..+.+++++................ ..+.-+++...+. .+.
T Consensus 175 ~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s-----~~k~v~~w~t~~~------------k~~ 237 (1363)
T KOG3628|consen 175 LGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVS-----LAKAVAWWKTNDF------------KGN 237 (1363)
T ss_pred cceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCccc-----HHHHHHhhhcccc------------cce
Confidence 99999999999999999999999999999988765443332110000 0000000000000 000
Q ss_pred hhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhH--------------------hHhC
Q 008342 173 IEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA--------------------LIWG 232 (569)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~--------------------~~~~ 232 (569)
+.++ ....+...-. ..+|-||++++|.--+++++|. ++.+..... ..++
T Consensus 238 ~~~~---------k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~ 306 (1363)
T KOG3628|consen 238 YTKD---------KIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFP 306 (1363)
T ss_pred eehh---------hccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccc
Confidence 0000 0111112222 7889999999999999999998 443332211 1224
Q ss_pred CCCCcEEEEcCCccchhhHHHHHHHHH-hcceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHcc-CCC----
Q 008342 233 MNEGAVFLWTLPMFHGNGWSYTWSLAA-LCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANA-SPE---- 303 (569)
Q Consensus 233 ~~~~d~~~~~~p~~~~~g~~~~~~~~~-~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~-~~~---- 303 (569)
....+.++.........|+.+.....+ .|.|.+.+++ +.|..+..++-+++++++..--.-++..... .+.
T Consensus 307 ~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~ 386 (1363)
T KOG3628|consen 307 VPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKAT 386 (1363)
T ss_pred cCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccc
Confidence 456777777788888888876655554 4556666665 6789999999999999998764444333221 111
Q ss_pred -----CCCCCcccceeeeecCCCCCHHHHHHhhh-----cCC---e---------------EecccccccCCCCcccccc
Q 008342 304 -----DTILPLTNVVNVNTAGAPPPPSLLFAMSQ-----KGF---R---------------ITHTYGLTELTGPASVCAW 355 (569)
Q Consensus 304 -----~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-----~~~---~---------------i~~~YG~tE~~~~~~~~~~ 355 (569)
....+++++|.+++.-..+.++..+-..+ .|. + ...+=+.+|.+......+.
T Consensus 387 ~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~ 466 (1363)
T KOG3628|consen 387 LSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPE 466 (1363)
T ss_pred cchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcc
Confidence 01123889999999999999877654432 221 1 1111222344322221111
Q ss_pred C----CCCCC------CC---------chhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccc
Q 008342 356 K----PEWDS------LP---------FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY 416 (569)
Q Consensus 356 ~----~~~~~------~~---------~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy 416 (569)
. ...+. +. ........-.+|...++--.+.++++++.+.|..+ ++|||||.++++...|
T Consensus 467 ~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~--eVGEIwVsS~~~~~~~ 544 (1363)
T KOG3628|consen 467 QMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTD--EVGEIWVSSNSLGKLF 544 (1363)
T ss_pred cccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccC--cceeEEEecCCcccce
Confidence 0 00000 00 00001111123444444325788999999999888 8999999999999999
Q ss_pred cCCcchhhhhhc-------------CCeeecCceeEEcCCCeEEEecccCceEE-eCceeechHH----------HHHHH
Q 008342 417 LKNPKANEEAFA-------------NGWFHSGDLAVKHPDNYIEIKDRLKDVII-SGGENISSVE----------VEKVL 472 (569)
Q Consensus 417 ~~~~~~~~~~~~-------------~g~~~tGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~----------iE~~l 472 (569)
|..+..+...|. .-+.|||-+|+++ .|.+|++|-.+|.+. ..|..++..+ ++.+.
T Consensus 545 ~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~ 623 (1363)
T KOG3628|consen 545 YALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVM 623 (1363)
T ss_pred eeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHH
Confidence 998888887772 1278999999999 555666666666665 8888777655 44555
Q ss_pred hcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEE--ecc---CCCCCCCcc
Q 008342 473 YLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV--FAA---LPKSATGKI 547 (569)
Q Consensus 473 ~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~--~~~---lP~t~~GKi 547 (569)
+..+.|-++.++- +|+.++.++-.+....++ .-+....+-+.+...+....+. ++. ||||+-|.+
T Consensus 624 R~v~~VF~~saf~------~E~~~Vv~~esP~a~e~~----~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi 693 (1363)
T KOG3628|consen 624 RGVIAVFDVSAFE------DEHIVVVVLESPDATEEN----SFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGI 693 (1363)
T ss_pred hccceEEEEeeee------cceEEEEEEeCcchhhhh----hhhHHHHHHHHHHHHhcccceEEEEeccccCCCcccccc
Confidence 6667788888875 344555555555543322 2222223333333333333322 333 999999999
Q ss_pred cHHHHHHHHHhcCC
Q 008342 548 QKHLLRAKAKEMGP 561 (569)
Q Consensus 548 ~r~~l~~~~~~~~~ 561 (569)
.-..+++.|.+...
T Consensus 694 ~~~~~k~~F~~G~L 707 (1363)
T KOG3628|consen 694 HNNECKQAFLEGSL 707 (1363)
T ss_pred ccHHHHHHHHcCCC
Confidence 99999999988764
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-17 Score=161.33 Aligned_cols=254 Identities=16% Similarity=0.120 Sum_probs=163.8
Q ss_pred eEEEEeccCCCCCCcceeecchHHHHHHHHhHhH---hCCCCCcEEEEcCCccchhhHHHHHHHHHhcce-EEEe-ccCC
Q 008342 197 SIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGT-SICL-RQVT 271 (569)
Q Consensus 197 ~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~-~~~~-~~~~ 271 (569)
...+..||||||.|-.+..+.............. .++..++++.... ++.+..+.. ...... +..+ -..+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~---~~~~~ly~~--~~~~~~~~~~~~l~~~ 175 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFL---RADNNLYQS--VNNRWISLDFFDLLAP 175 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEE---ccChhHHHH--HHhccceeeecCCCcC
Confidence 4567789999999999999998765443332222 2455555554432 111111111 111111 1111 1246
Q ss_pred hHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhh-hcCCeEecccccccCCCCc
Q 008342 272 AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS-QKGFRITHTYGLTELTGPA 350 (569)
Q Consensus 272 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~ 350 (569)
.+.+++.|++++|+++.++|+.+..|++........ .+++.++++||.+++...+.++ .+|+++++.||+|| |.++
T Consensus 176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~--~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la 252 (430)
T TIGR02304 176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT--IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLA 252 (430)
T ss_pred HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC--CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheE
Confidence 789999999999999999999999999875543322 4689999999999999998888 55999999999999 6666
Q ss_pred cccccCCCCCCCCchhhhhccccCCceeeccCCce--eeeCCCCcccCCCCCceEEEEEecCcc-cccccCCcchhhhhh
Q 008342 351 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCV-MKGYLKNPKANEEAF 427 (569)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~--i~d~~~~~~~~~~~~~~Gel~v~~~~~-~~gy~~~~~~~~~~~ 427 (569)
+.|..+ .+.... ..+ -++ ++|++ ++ +..++|+-.. ....+
T Consensus 253 ~eC~~g-~lHl~e---------------d~~-~vE~~ivD~~-~~---------~~~ViT~L~n~~~PlI---------- 295 (430)
T TIGR02304 253 STCRCG-TLHLNE---------------DLV-HIEKQYLDEH-KR---------FVPIITDFTRTTQPIV---------- 295 (430)
T ss_pred EecCCC-CEEEcc---------------ccE-EEEeeEECCC-Cc---------eEEEEecCCCccceEE----------
Confidence 666422 111100 001 233 67765 22 4457776432 12222
Q ss_pred cCCeeecCceeEEcCC----Ce----E-EEecccCceEEe---Cc--eeechHHHHHHH-hcCCCceeeEEEeecCCCCC
Q 008342 428 ANGWFHSGDLAVKHPD----NY----I-EIKDRLKDVIIS---GG--ENISSVEVEKVL-YLHPLVLEAAVVARPDERWG 492 (569)
Q Consensus 428 ~~g~~~tGD~~~~~~~----g~----l-~~~GR~~d~i~~---~G--~~v~~~~iE~~l-~~~~~v~~~~v~~~~~~~~g 492 (569)
.|+|||++.+.++ |. + .+.||.+|++++ +| ..++|..++..+ ...+.|.+.+++....
T Consensus 296 ---RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~~---- 368 (430)
T TIGR02304 296 ---RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTGS---- 368 (430)
T ss_pred ---eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEccC----
Confidence 3999999888544 22 3 388999999984 45 445999998774 4578999998876432
Q ss_pred ceeeEEEEec
Q 008342 493 ESPCAFVTLK 502 (569)
Q Consensus 493 ~~~~~~v~~~ 502 (569)
+.+.+.++..
T Consensus 369 ~~l~v~~~~~ 378 (430)
T TIGR02304 369 AQLELIADCE 378 (430)
T ss_pred CeEEEEEEeC
Confidence 2356666553
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-11 Score=89.83 Aligned_cols=69 Identities=49% Similarity=0.817 Sum_probs=59.2
Q ss_pred HHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCce--EE-ecc-CCCC
Q 008342 467 EVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKS--VV-FAA-LPKS 542 (569)
Q Consensus 467 ~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~--i~-~~~-lP~t 542 (569)
|||++|.+||+|.+|+|++.+++.+|+.+++++++ ..++|.++++++|+.|++|+. ++ +.+ ||+|
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-----------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t 69 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-----------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRT 69 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-----------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBE
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-----------eecccccchhhhCCCcceeeEEEEccccCcCCCC
Confidence 79999999999999999999999999999999998 127899999999999999944 33 346 9999
Q ss_pred CCCc
Q 008342 543 ATGK 546 (569)
Q Consensus 543 ~~GK 546 (569)
++||
T Consensus 70 ~~GK 73 (73)
T PF13193_consen 70 PSGK 73 (73)
T ss_dssp TTSS
T ss_pred CCCC
Confidence 9998
|
... |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.7e-08 Score=95.67 Aligned_cols=227 Identities=20% Similarity=0.243 Sum_probs=131.0
Q ss_pred CcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH---h-CCCC-CcEEEEcCCccch-hhHH---HHHHHHHhcce
Q 008342 193 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---W-GMNE-GAVFLWTLPMFHG-NGWS---YTWSLAALCGT 263 (569)
Q Consensus 193 ~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~---~-~~~~-~d~~~~~~p~~~~-~g~~---~~~~~~~~g~~ 263 (569)
.++++..++.||||||.|.-+.+.+..+..+....... + +... ...++...|-... ..+. .........++
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 34567789999999999877777666655444333322 2 2222 2233333333211 1111 11111122333
Q ss_pred EEEec--cCChHHHHHHHH----hcCccEEeehHHHHHHHHccCCCCCCC-Ccc-cceeeeecC------CCCCH-HHHH
Q 008342 264 SICLR--QVTAKAVYTAIA----THGVTHFCAAPVVLNAIANASPEDTIL-PLT-NVVNVNTAG------APPPP-SLLF 328 (569)
Q Consensus 264 ~~~~~--~~~~~~~~~~i~----~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~-~l~~~~~~g------~~l~~-~~~~ 328 (569)
...+. .++.+.++..+. +.++..+++.|.++-.++......... .++ ..+.+-.|| +.+++ ++.+
T Consensus 167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~ 246 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYA 246 (365)
T ss_pred eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHH
Confidence 44443 356666666654 456888999888666555443322221 033 334444554 44654 5555
Q ss_pred Hhhh-cCC----eEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceE
Q 008342 329 AMSQ-KGF----RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIG 403 (569)
Q Consensus 329 ~~~~-~~~----~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~G 403 (569)
.+.+ +|+ ++++.||+||.....+.|... ....|. -+.|.|++|..+++.| +.|
T Consensus 247 ~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~----------------~~~~p~----wV~iRDp~tl~~~~~G--e~G 304 (365)
T PF04443_consen 247 RLQEVFGVIPIENIYDMYGMTELNSQAYECGHG----------------HFHVPP----WVIIRDPETLEPLPPG--ETG 304 (365)
T ss_pred HHHHHHCCCCHHHeeeeeeccccchhheeCCCC----------------cccCCC----eEEEECCCCCcCCCCC--Cee
Confidence 5554 477 699999999987655554211 111122 2677799999999988 889
Q ss_pred EEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCC--------CeEEEecccCc
Q 008342 404 EIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD--------NYIEIKDRLKD 454 (569)
Q Consensus 404 el~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~--------g~l~~~GR~~d 454 (569)
-|.+-++.... | .+..-|.|+|.+..+ .++.++||.+.
T Consensus 305 li~vidl~~~s-~------------p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~ 350 (365)
T PF04443_consen 305 LIQVIDLANTS-Y------------PGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG 350 (365)
T ss_pred EEEEEcccccC-C------------CcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence 99887764321 1 233569999988654 26899999774
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-07 Score=94.57 Aligned_cols=89 Identities=20% Similarity=0.223 Sum_probs=60.1
Q ss_pred CceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcC--CC--eEEEecccCceEEeCceeechHHHHHHHhcC
Q 008342 400 KTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP--DN--YIEIKDRLKDVIISGGENISSVEVEKVLYLH 475 (569)
Q Consensus 400 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~--~g--~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 475 (569)
|+.-||++|.. .|.|+ |+.||++++.. ++ .+.|+||.+.++.+.|++++-.+|++++.+.
T Consensus 355 G~~YelviTt~---~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~ 418 (528)
T PF03321_consen 355 GEEYELVITTN---SGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARA 418 (528)
T ss_dssp T-EEEEEEEST---TS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHH
T ss_pred CCeEEEEEecc---cceee-------------eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHH
Confidence 36789999985 35554 99999999863 23 7999999999999999999999999998764
Q ss_pred -----CCceeeEEEeecCCCCCceeeEEEEecCC
Q 008342 476 -----PLVLEAAVVARPDERWGESPCAFVTLKPE 504 (569)
Q Consensus 476 -----~~v~~~~v~~~~~~~~g~~~~~~v~~~~~ 504 (569)
-.+.+..+...........-+.++++...
T Consensus 419 ~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~ 452 (528)
T PF03321_consen 419 LQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE 452 (528)
T ss_dssp HHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred HHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence 24567777655322222344666776665
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.5e-05 Score=59.49 Aligned_cols=85 Identities=28% Similarity=0.370 Sum_probs=56.1
Q ss_pred ceeechHHHHHHHhcCCCce-eeEEEeecCCCCCceeeEEEEecCCcch--hhhhhHHHHHHHHHHhcCCCCcCCceEEe
Q 008342 460 GENISSVEVEKVLYLHPLVL-EAAVVARPDERWGESPCAFVTLKPEADE--LDKGKLAEDVSKFCRAKMPSYWVPKSVVF 536 (569)
Q Consensus 460 G~~v~~~~iE~~l~~~~~v~-~~~v~~~~~~~~g~~~~~~v~~~~~~~~--~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 536 (569)
|.+|+|..||++|.++|++. +++++.. .....+.+.+.|++.++... .+...+.++|.+.+++.+. +...+.+
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~-~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lg---v~~~V~l 76 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVT-REGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLG---VRPEVEL 76 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEE-EETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHS---S-EEEEE
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEE-cCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcC---ceEEEEE
Confidence 78999999999999999999 5555544 33456778888998886532 2344567788888888774 2234554
Q ss_pred cc---CCCCCCCcccH
Q 008342 537 AA---LPKSATGKIQK 549 (569)
Q Consensus 537 ~~---lP~t~~GKi~r 549 (569)
++ ||++ .||..|
T Consensus 77 v~~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 77 VPPGTLPRS-EGKAKR 91 (96)
T ss_dssp E-TT-S----SSSS-S
T ss_pred ECCCCccCC-CCcceE
Confidence 43 9998 688765
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0028 Score=65.82 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=47.9
Q ss_pred ceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcC----CCeEEEecccCceEEeCceeechHHHHHHHhcC
Q 008342 401 TIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP----DNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 475 (569)
Q Consensus 401 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 475 (569)
+.-||++|.. .|.|+ ||.||++++.. ...+.|++|.+.+..+.|+|.+-.++..++.+.
T Consensus 402 ~~YelVvTt~---~GLYR-------------YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a 464 (606)
T PLN02247 402 HYYELVVTTF---TGLYR-------------YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA 464 (606)
T ss_pred CeEEEEEEec---CceEE-------------EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence 6789999874 24443 99999998852 357999999999999999999999998888653
|
|
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0018 Score=67.90 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=48.4
Q ss_pred ceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcC----CCeEEEecccCceEEeCceeechHHHHHHHhc
Q 008342 401 TIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP----DNYIEIKDRLKDVIISGGENISSVEVEKVLYL 474 (569)
Q Consensus 401 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 474 (569)
+.-+|+++.. .|.|+ |+.||++++.. -..+.|+||.+.++.+.|++++-.+++.++.+
T Consensus 395 ~~Y~lVvTT~---~GLyR-------------Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 395 KEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred CeEEEEEEcc---cceeE-------------eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence 6789999874 34453 99999999863 24799999999999999999999999998876
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0055 Score=63.61 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=47.2
Q ss_pred ceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcC----CCeEEEecccCceEEeCceeechHHHHHHHhc
Q 008342 401 TIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP----DNYIEIKDRLKDVIISGGENISSVEVEKVLYL 474 (569)
Q Consensus 401 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 474 (569)
+.-||+||.. .|.|+ ||.||++++.. ...+.|++|.+-+..+.|+|.+-.++..++.+
T Consensus 408 ~~YelvvTt~---~GLyR-------------YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~ 469 (612)
T PLN02620 408 QEYELVVTTY---AGLYR-------------YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKN 469 (612)
T ss_pred CeEEEEEEec---CceEE-------------EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHH
Confidence 6789999874 34443 99999998862 35799999999988999999999999877765
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.084 Score=52.56 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=78.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCch--hHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEE
Q 008342 44 KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVP--AMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVV 121 (569)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 121 (569)
-.+|+.|....+..+|+.|...|..+||+|.....-+. .-+-..+|+.++|++++|+.+. ..+.-..+++++++.++
T Consensus 108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI 186 (438)
T COG1541 108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI 186 (438)
T ss_pred eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence 34999999999999999999999999999888776322 2267889999999999999884 56777889999999999
Q ss_pred EEcccchHHHHHHHHHH
Q 008342 122 IVDQEFFSLAEEALKMM 138 (569)
Q Consensus 122 i~~~~~~~~~~~~~~~~ 138 (569)
.+.+.+.-.+.+.+...
T Consensus 187 ~~tps~~l~lae~~~~~ 203 (438)
T COG1541 187 AATPSYLLYLAEEAEEE 203 (438)
T ss_pred EEChHHHHHHHHHHHHc
Confidence 99998876666655544
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=87.57 E-value=4.7 Score=41.54 Aligned_cols=80 Identities=13% Similarity=0.118 Sum_probs=61.9
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchh--HHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEE
Q 008342 45 HYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPA--MYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI 122 (569)
Q Consensus 45 ~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 122 (569)
-+|..++...+...+..+...|+++||++.+..+.... .....+++...|+.+++... ......++++.++.+++
T Consensus 105 ~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l~ 181 (445)
T TIGR03335 105 FLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGIV 181 (445)
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEEE
Confidence 48999999888888888888899999999998776542 23456788899998776543 23457788999999988
Q ss_pred Ecccc
Q 008342 123 VDQEF 127 (569)
Q Consensus 123 ~~~~~ 127 (569)
.....
T Consensus 182 ~~ps~ 186 (445)
T TIGR03335 182 ASVFK 186 (445)
T ss_pred ECHHH
Confidence 76554
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=87.43 E-value=4.3 Score=41.47 Aligned_cols=88 Identities=13% Similarity=0.088 Sum_probs=66.7
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCch--hHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEE
Q 008342 45 HYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVP--AMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI 122 (569)
Q Consensus 45 ~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 122 (569)
.+|..++......++..+...|+++||++....+... ......+++...|+.+++++.. ..+.+...|+..++.+++
T Consensus 94 ~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~t~l~ 172 (422)
T TIGR02155 94 GYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGG-QTEKQVQLIQDFKPDIIM 172 (422)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCC-CHHHHHHHHHHHCCCEEE
Confidence 3688888777777777787889999999887665432 2233457788999999988765 457788999999999999
Q ss_pred EcccchHHHHH
Q 008342 123 VDQEFFSLAEE 133 (569)
Q Consensus 123 ~~~~~~~~~~~ 133 (569)
..+.....+.+
T Consensus 173 ~~Ps~l~~L~~ 183 (422)
T TIGR02155 173 VTPSYMLNLLE 183 (422)
T ss_pred EcHHHHHHHHH
Confidence 98876655443
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 569 | ||||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 3e-66 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 1e-49 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 4e-40 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 2e-31 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 2e-30 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 1e-27 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 1e-27 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 1e-27 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 2e-27 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 2e-27 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 4e-27 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 4e-27 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 7e-27 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 7e-27 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 7e-27 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 7e-27 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 1e-26 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 2e-26 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 2e-26 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 5e-26 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 2e-25 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 4e-25 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 6e-25 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 7e-25 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 7e-25 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 8e-25 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 2e-24 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 2e-24 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 1e-22 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 1e-21 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 3e-20 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 5e-20 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 5e-20 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 7e-20 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 9e-20 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 5e-19 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 5e-19 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 5e-19 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 8e-19 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 1e-17 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 3e-17 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 1e-16 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 3e-16 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 2e-15 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 4e-14 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 2e-10 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 7e-10 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 5e-09 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 7e-07 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 2e-06 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 2e-06 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 3e-05 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 4e-05 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 3e-04 | ||
| 3ite_A | 562 | The Third Adenylation Domain Of The Fungal Sidn Non | 5e-04 |
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
| >pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 707 bits (1827), Expect = 0.0
Identities = 171/554 (30%), Positives = 256/554 (46%), Gaps = 38/554 (6%)
Query: 15 ANYTALTPLWFINRAATLHPTRKSVVY---GSKH-YTWHQTYRRCRRFASALSKLSIGLG 70
L F+ RAA L ++ V G H T+ + Y+R RR L L +G+G
Sbjct: 13 MMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVG 72
Query: 71 TTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 130
V+ + N EA F P GAVL++ N RL+ +A+IL+HA V++ D L
Sbjct: 73 DRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPL 132
Query: 131 AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 190
E ++ H +V+ +++ + G + YE+ L
Sbjct: 133 VEAIRGELK-------TVQHFVVMDEKAPE----------GYLAYEEALGEEADPVRV-- 173
Query: 191 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHG 248
E + + YT+GTT PKGVV SHR L SL +L+ ++E V L +PMFH
Sbjct: 174 --PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHV 231
Query: 249 NGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 307
N W ++ + + ++ ++ GVT P V A+A+ E T
Sbjct: 232 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY-LESTGH 290
Query: 308 PLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQ 367
L + + G+ P SL+ + G + YGLTE + K +SL E +
Sbjct: 291 RLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEK 350
Query: 368 ARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 427
L A+ G+ + L V D +PVP DGK +GE+ ++G + GY N +A A
Sbjct: 351 LTLKAKTGLPIPLVR-LRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSAL 408
Query: 428 -ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 486
+G+F +GD+AV + Y+EIKDRLKD+I SGGE ISSV++E L HP V EAAVVA
Sbjct: 409 TPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAI 468
Query: 487 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATG 545
P +W E P A V + E E +A + +P + VF +P+++ G
Sbjct: 469 PHPKWQERPLAVVVPRGEKP-----TPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAG 523
Query: 546 KIQKHLLRAKAKEM 559
K K LR + K
Sbjct: 524 KFLKRALREQYKNY 537
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 460 bits (1187), Expect = e-158
Identities = 106/535 (19%), Positives = 196/535 (36%), Gaps = 44/535 (8%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMY 84
++ + A + ++ G + YT+ Y A L + V + N
Sbjct: 6 WLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLK---AYQQSRVGLYIDNSIQSI 62
Query: 85 EAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEG 144
+A + IN RL + + ++ + + + + G
Sbjct: 63 ILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAG 122
Query: 145 KLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTS 204
+ T + ++ E + P + ++ +TS
Sbjct: 123 RDITTNGLLDNTMGIQ----------YDTSNETVVPKESPSNILNTSFNLDDIASIMFTS 172
Query: 205 GTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTS 264
GTT K V + R Y ++ G + +L LP++H +G S T
Sbjct: 173 GTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTV 232
Query: 265 ICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPP 324
+ + A+ + T I +TH P LN + + N+ + GA
Sbjct: 233 RIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP----YNLQKILLGGAKLSA 288
Query: 325 SLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL 384
+++ Q I +++G+TE PE T+ +
Sbjct: 289 TMIETALQYNLPIYNSFGMTETCSQFLTAT--PEM------------LHARPDTVGMPSA 334
Query: 385 DVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDN 444
+V D + + + GE++++G+ VM GYL F NG+F++GD+A +
Sbjct: 335 NV-DVKI---KNPNKEGHGELMIKGANVMNGYLYPTDL-TGTFENGYFNTGDIAEIDHEG 389
Query: 445 YIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPE 504
Y+ I DR KD+IISGGENI ++E V P + +A V PD+ WG+ P + + +
Sbjct: 390 YVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD 449
Query: 505 ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLRAKAKE 558
+ + + + Y VPK LP ++TGK+Q++ L +
Sbjct: 450 ISK-------AQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 455 bits (1174), Expect = e-156
Identities = 153/535 (28%), Positives = 229/535 (42%), Gaps = 47/535 (8%)
Query: 24 WFINRAATLHPTRKSVV--YGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVP 81
W + + AT+ P ++ V T+ Q R A L+ L I G V+++ PN
Sbjct: 20 WMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSV 79
Query: 82 AMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEAN 141
+GA GAV IN RL A V+FILS + S VVI + +
Sbjct: 80 EFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAI------- 132
Query: 142 SEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALG 201
+ P + GA + L + + + ++ +
Sbjct: 133 -RAQADPPGTVTDWI--------------GADSLAERLRSAAADEPAVECGGD-DNLFIM 176
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC 261
YTSGTT PKGVV +H + + + A + L LPMFH + A
Sbjct: 177 YTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRG 236
Query: 262 GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAP 321
T I + Q A V++ I V A P +LN + PE L + T GAP
Sbjct: 237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQV-PEFAELDAPDFRYFITGGAP 295
Query: 322 PPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICL 381
P +L+ + K + Y LTE G ++ E R G T+
Sbjct: 296 MPEALIKIYAAKNIEVVQGYALTESCGGGTLLLS---------EDALRKAGSAGRATMFT 346
Query: 382 DGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKH 441
D + V GE+V++ ++K Y P+A +AF NGWF +GD+
Sbjct: 347 D-VAVRGD-DGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEID 401
Query: 442 PDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTL 501
+ Y+ IKDRLKD+IISGGEN+ E+E V+ P V E AV+ PDE+WGE A V
Sbjct: 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVA 461
Query: 502 KPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLRAK 555
+E+ + + ++C ++ Y +PK V+F A+P++ TGKI K +LR +
Sbjct: 462 DQ--NEVS----EQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQ 510
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 451 bits (1164), Expect = e-154
Identities = 131/543 (24%), Positives = 207/543 (38%), Gaps = 57/543 (10%)
Query: 20 LTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPN 79
T R A L P R + + T R R AS L + + G V++++ N
Sbjct: 6 FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQN 65
Query: 80 VPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMME 139
M E + GA+L +N RLNA +AF+L + +VV+ ++ + L +
Sbjct: 66 CSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG 125
Query: 140 ANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA 199
IGD + ++ D +
Sbjct: 126 G-------VKKAYAIGDG-----------SGPFAPFKDLASDTPFSAPEFGAADGFV--- 164
Query: 200 LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 259
+ +T+ P+G ++S + + W + E V L LP+FH G +L
Sbjct: 165 IIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQ 224
Query: 260 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAG 319
G S+ + I H VT +L I + L ++ V
Sbjct: 225 AGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQ-AAPA--QLASLRAVTGLD 281
Query: 320 APPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDS----LPFETQARLNARQG 375
P A T+G +E +G ++ ++ S L +
Sbjct: 282 TPETIERFEAT-CPNATFWATFGQSETSGLSTFAPYRDRPKSAGRPLFW-RTVA------ 333
Query: 376 VRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSG 435
V+DA P+P +GEIV+RG V KGY N A + AF NGW H+G
Sbjct: 334 ----------VVDAEDR-PLPPG--EVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTG 380
Query: 436 DLAVKHPDNYIEIKDRL--KDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493
D+ D Y+ R K++I +GGEN+ EVE L HP + +A V+ PD +W E
Sbjct: 381 DMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSE 440
Query: 494 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLL 552
+ A KP + A+ +++F + + Y PK VVF ALPK A G I + +
Sbjct: 441 AIKAVCVCKPGE-SIA----ADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAV 495
Query: 553 RAK 555
+
Sbjct: 496 KTA 498
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 404 bits (1041), Expect = e-136
Identities = 131/547 (23%), Positives = 210/547 (38%), Gaps = 66/547 (12%)
Query: 25 FINRAATLHPTRKSVVYG--SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPA 82
+ RAAT P ++ T + R A+ L + V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 MYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANS 142
+ A GAV +N RL + +A ++ ++
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIF-------- 118
Query: 143 EGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY 202
+I +GD D + Y + E P + Y
Sbjct: 119 -QSGSGARIIFLGDLVRDGEPYSYGPPIEDPQ----REPAQP-------------AFIFY 160
Query: 203 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLAAL 260
TSGTT PK ++ R A L + G+ G V L +P++H G+ +AAL
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFF-AVLVAAL 219
Query: 261 C--GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP--LTNVVNVN 316
GT + + + + VT A P L+A+A A L ++ +V
Sbjct: 220 ALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAA-AAHAGSSLKLDSLRHVT 278
Query: 317 TAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNARQ 374
AGA P ++L + Q + YG TE + K + P F ++ R
Sbjct: 279 FAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVR----- 333
Query: 375 GVRTICLDGLDVIDART--NQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGW 431
++ ++ V GE+++ S GYL P+A E +GW
Sbjct: 334 -----------IVRIGGGVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 432 FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 491
+ + D+AV P+ + I R+ D+IISGGENI E+E+VL P V E V+ D+RW
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRW 440
Query: 492 GESPCAFVTLKPEADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVFA-ALPKSATGKIQK 549
G+S A V + L A+ + FCR+ ++ + PK LPK+A K+ +
Sbjct: 441 GQSVTACVVPRLGE-TLS----ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLR 495
Query: 550 HLLRAKA 556
L +
Sbjct: 496 RQLVQQV 502
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 372 bits (958), Expect = e-124
Identities = 117/545 (21%), Positives = 192/545 (35%), Gaps = 66/545 (12%)
Query: 28 RAATLHPTRKSVVYGS-KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEA 86
P + ++ + ++ + R R A+ L + +G V+
Sbjct: 10 FDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVL 69
Query: 87 QFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKL 146
AG V +N + + ++ A +V+ D
Sbjct: 70 YLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAA---------- 119
Query: 147 KTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGT 206
K + G FA + A+ YTSGT
Sbjct: 120 KVGATVETLG------------PDGRGSLTDAAAGASEAFATIDRGAD-DLAAILYTSGT 166
Query: 207 TASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC--GTS 264
T KG ++SH SL W V + LP++H +G S L G+
Sbjct: 167 TGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLF-VASNVTLFARGSM 225
Query: 265 ICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPP 324
I L + + +A T P + + P T ++ + AP
Sbjct: 226 IFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQS-PRLTKETTGHMRLFISGSAPLLA 282
Query: 325 SLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLP-------FETQARLNARQGV 376
S K G + YG+TE T + + D +P AR
Sbjct: 283 DTHREWSAKTGHAVLERYGMTE-TNM--NTSNPYDGDRVPGAVGPALPGVSAR------- 332
Query: 377 RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSG 435
V D T + +P IG I ++G V KGY + P+ + F +G+F +G
Sbjct: 333 ---------VTDPETGKELPRG--DIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITG 381
Query: 436 DLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 495
DL Y+ I R KD++I+GG N+ E+E + P V+E+AV+ P +GE
Sbjct: 382 DLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGV 441
Query: 496 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLRA 554
A V A +D V ++ + +PK V+F LP++ GK+QK++LR
Sbjct: 442 TAVVVRDKGA-TID----EAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRE 496
Query: 555 KAKEM 559
K++
Sbjct: 497 TYKDI 501
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 373 bits (960), Expect = e-122
Identities = 116/537 (21%), Positives = 204/537 (37%), Gaps = 43/537 (8%)
Query: 29 AATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQF 88
+V+ G + ++ + + A +L + I G T V NV +Y F
Sbjct: 34 TRHAASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93
Query: 89 GAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKT 148
G + + S A++I D++ + + ++
Sbjct: 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIR- 152
Query: 149 PHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTA 208
+ ++ D G + + +F P + + + GTT
Sbjct: 153 -VVQLLNDS-------------GEHNLQDAINHPAEDFTATPSPAD-EVAYFQLSGGTTG 197
Query: 209 SPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC--GTSIC 266
+PK + +H Y I + +L +P H S SL GT +
Sbjct: 198 TPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257
Query: 267 LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANAS-PEDTILPLTNVVNVNTAGAPPPPS 325
+A + I H V P ++ A ++ L ++ + GA +
Sbjct: 258 AADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSAT 317
Query: 326 LLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL 384
L + + G ++ +G+ E V + ++ ++ QG D +
Sbjct: 318 LAARIPAEIGCQLQQVFGMAE----GLVNY------TRLDDSAEKIIHTQGYPMCPDDEV 367
Query: 385 DVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPD 443
V DA P+P +G ++ RG +GY K+P+ N AF ANG++ SGDL P+
Sbjct: 368 WVADA-EGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPE 424
Query: 444 NYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKP 503
YI ++ R KD I GGE I++ E+E +L HP V+ AA+V+ DE GE CA++ +K
Sbjct: 425 GYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE 484
Query: 504 EADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVF-AALPKSATGKIQKHLLRAKAKE 558
V +F R + + + +P V +LP +A GK+ K LR
Sbjct: 485 PLRA-------VQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 364 bits (937), Expect = e-120
Identities = 114/540 (21%), Positives = 205/540 (37%), Gaps = 40/540 (7%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMY 84
+ HP +++ G + ++ + R A+ L++ +G G T V PNV Y
Sbjct: 35 ILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFY 94
Query: 85 EAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEG 144
F AG V+ + + + ++I ++ + +++ +
Sbjct: 95 IVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQ--FIDSLHDV 152
Query: 145 KLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTS 204
L ++++ ++ ++ET F + +
Sbjct: 153 NLSPEIILMLNHQA------------TDFGLLDWIETPAETFVDFSSTPADEVAFFQLSG 200
Query: 205 GTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC--G 262
G+T +PK + +H A I G+N L LP H S +L L G
Sbjct: 201 GSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGG 260
Query: 263 TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPP 322
+ ++ I H V P + + ++ + GA
Sbjct: 261 CVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEK-AAQYKDQIQSLKLLQVGGASF 319
Query: 323 PPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTIC- 380
P SL + + ++ +G+ E V + + E QG R I
Sbjct: 320 PESLARQVPEVLNCKLQQVFGMAE----GLVNYTRLDD---SDEQIF---TTQG-RPISS 368
Query: 381 LDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAV 439
D + ++D + VP IG + RG GY ++P+ N + F + +++SGDL
Sbjct: 369 DDEIKIVDE-QYREVPEG--EIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQ 425
Query: 440 KHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFV 499
+ PD + + R+KD I GGE I+S E+EK++ LHP V+ AA+VA DE++GE CAF+
Sbjct: 426 RTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFI 485
Query: 500 TLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLRAKAKE 558
+ K + Y +P + +LP +A GK+ K LR+
Sbjct: 486 VSRNPEL-----KAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 360 bits (926), Expect = e-118
Identities = 118/544 (21%), Positives = 208/544 (38%), Gaps = 52/544 (9%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMY 84
+ A + R ++ G+ H+++ + R R A+ KL I V V PN+ +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 85 EAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEF--FSLAEEALKMMEANS 142
E F GA+ ++ + + A +A I+ + F A ++
Sbjct: 90 EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP 149
Query: 143 EGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY 202
K ++IV G+ A + E L T + D L
Sbjct: 150 TLK----NIIVAGE------------AEEFLPLED-LHTEPVKLPEVKSSDV---AFLQL 189
Query: 203 TSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC- 261
+ G+T K + +H + ++ V+L LPM H S L L
Sbjct: 190 SGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYA 249
Query: 262 -GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGA 320
G + + + I VT P + +A L+++ + GA
Sbjct: 250 GGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDA-ASSRRDDLSSLQVLQVGGA 308
Query: 321 PPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPE-WDSLPFETQAR-LNARQGVR 377
+ G + +G+ E V + + + + TQ + ++ R
Sbjct: 309 KFSAEAARRVKAVFGCTLQQVFGMAE----GLVNYTRLDDPEEIIVNTQGKPMSPYDESR 364
Query: 378 TICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGD 436
V D ++ V G ++ RG ++GY K + N +F +G++ +GD
Sbjct: 365 --------VWDD-HDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGD 413
Query: 437 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC 496
+ D YI ++ R KD I GGE +++ EVE L HP V +AA+V+ PD+ GE C
Sbjct: 414 IVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSC 473
Query: 497 AFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVF-AALPKSATGKIQKHLLRA 554
F+ + EA + A ++ F R + + +Y +P V F + P++ GK+ K LR
Sbjct: 474 VFIIPRDEAPK------AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALRE 527
Query: 555 KAKE 558
E
Sbjct: 528 AISE 531
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 347 bits (893), Expect = e-114
Identities = 126/543 (23%), Positives = 203/543 (37%), Gaps = 59/543 (10%)
Query: 28 RAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQ 87
R + + + + T+ + R RRFASAL L + + ++ + A+ A
Sbjct: 31 RLNETRAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90
Query: 88 FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLK 147
GA AG V N L ++L+H+ + VI +AL+ +
Sbjct: 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE--------SAE 142
Query: 148 TPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEF--AWKPPEDEWQSIA-LGYTS 204
+I + + + R A +E+ ++ P A +D IA Y+S
Sbjct: 143 HDGCQLIVSQPRE------SEPRLAPLFEELIDAAAPAAKAAATGCDD----IAFWLYSS 192
Query: 205 GTTASPKGVVVSHRGAYLMS-LNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGT 263
G+T PKG V +H Y + L I G+ E V +F G + G
Sbjct: 193 GSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGA 252
Query: 264 SICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAP 321
+ L + TA A++ + H T F P + + + P + +AG
Sbjct: 253 TAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVS-PNLPARADVAIRICTSAGEA 311
Query: 322 PPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDS------LPFE-TQARLNAR 373
P + + G I G TE + P +
Sbjct: 312 LPREIGERFTAHFGCEILDGIGSTE-MLHIFLSN--RAGAVEYGTTGRPVPGYEIE---- 364
Query: 374 QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH 433
+ D VP +G++ ++G Y N + + F W
Sbjct: 365 ------------LRDE-AGHAVPDG--EVGDLYIKGPSAAVMYWNNREKSRATFLGEWIR 409
Query: 434 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493
SGD + P+ R D++ G+ +S VEVE VL H VLEAAVV +
Sbjct: 410 SGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVK 469
Query: 494 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLL 552
AFV LK E + LAE++ F + ++ + P+ +VF LPK+ATGKIQ+ L
Sbjct: 470 -TRAFVVLKREFAPSE--ILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKL 526
Query: 553 RAK 555
R +
Sbjct: 527 REQ 529
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 346 bits (891), Expect = e-113
Identities = 120/569 (21%), Positives = 225/569 (39%), Gaps = 76/569 (13%)
Query: 21 TPLW-FINRAATLHPTRKSVVYGS--------KHYTWHQTYRRCRRFASALSKLSIGLGT 71
L I+ AA + +++ + + + ++ AS +S+ + G
Sbjct: 19 ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGE 78
Query: 72 TVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLA 131
V V PN + A IN + + IL+ + + ++V +
Sbjct: 79 HVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENF 138
Query: 132 EEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPP 191
+ L+ K + V+G E + +++G +F
Sbjct: 139 KPVLE--------KTGVERVFVVGGE--------------VNSLSEVMDSGSEDFE-NVK 175
Query: 192 EDEWQSIA-LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 250
+ + +A + YT GTT PKGV+++H +L A+ G++ + +PMFH
Sbjct: 176 VNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAE 235
Query: 251 WSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANAS-PEDTILPL 309
+ + + + + + + I + T A P LN + N +
Sbjct: 236 FGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDW 295
Query: 310 TNVVNVNTAGAPPPPSLLFAMSQK-GFRITHT-------YGLTELTGPASVCAWKPEWDS 361
+ + T P P+L+ + + + + +G+TE + S
Sbjct: 296 SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKS 355
Query: 362 ----LP-FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGY 416
+P + + + VI + + GEIV+RG + KGY
Sbjct: 356 TTQGVPMSDIELK----------------VISLEDGRELGVG--ESGEIVIRGPNIFKGY 397
Query: 417 LKNPKANEEAF-----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKV 471
K K N+E + +F +GD+ + ++ +DR+K+VI G I+ E+E +
Sbjct: 398 WKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEAL 457
Query: 472 LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEAD-ELDKGKLAEDVSKFCRAKMPSYWV 530
L H V++ AV+ +PDE GE P AF+ LKPE ++D ED+ ++ R ++ Y
Sbjct: 458 LMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVD----EEDIIEWVRERISGYKR 513
Query: 531 PKSVVF-AALPKSATGKIQKHLLRAKAKE 558
+ V F LP++A+GK+ + LLR K E
Sbjct: 514 VREVEFVEELPRTASGKLLRRLLREKEAE 542
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 339 bits (872), Expect = e-111
Identities = 122/543 (22%), Positives = 194/543 (35%), Gaps = 79/543 (14%)
Query: 24 WFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAM 83
R ++ +G + T+ + A + V+V A
Sbjct: 27 ALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIGG-----AGRVAVWATPAMET 81
Query: 84 YEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSE 143
A A +AG +N + +A ILS ++ ++V+ +
Sbjct: 82 GVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDA---------------- 125
Query: 144 GKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYT 203
E A GA+E +D + + YT
Sbjct: 126 ---------------------ELPPALGALERVDVDVRARGAVPEDGADDGDPA-LVVYT 163
Query: 204 SGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC-- 261
SGTT PKG V+ R A W V + LP+FH +G L L
Sbjct: 164 SGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLV-LGILGPLRRG 222
Query: 262 GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP--LTNVVNVNTAG 319
G+ L + + + + G T P + + IA P D L L + +
Sbjct: 223 GSVRHLGRFSTEGAARELN-DGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGS 281
Query: 320 APPPPSLLFAMSQK-GFRITHTYGLTELTGPASVC----AWKPEWDSLPFE-TQARLNAR 373
A P ++ G R+ YG+TE T + + +P + R
Sbjct: 282 AALPVHDHERIAAATGRRVIERYGMTE-TLMNTSVRADGEPRAGTVGVPLPGVELR---- 336
Query: 374 QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWF 432
+++ DG+++GEI +RG + YL P A AF +G+F
Sbjct: 337 ------------LVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFF 384
Query: 433 HSGDLAVKHPDNYIEIKDR-LKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 491
+GD+AV+ PD Y+ I R D+I SGG I + E+E L HP V EAAV PD
Sbjct: 385 RTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDL 444
Query: 492 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKH 550
GE A++ A ++ A++ + P+ V + A+P++ GKI K
Sbjct: 445 GERIVAWIVPADPAAPPA----LGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKR 500
Query: 551 LLR 553
L
Sbjct: 501 ALN 503
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 332 bits (853), Expect = e-107
Identities = 126/553 (22%), Positives = 233/553 (42%), Gaps = 58/553 (10%)
Query: 22 PLW-FINRAATLHPTRKSVVYGS--KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAP 78
PL ++ + H ++ ++ G+ YT+ RR AS L+K+ I G + + P
Sbjct: 23 PLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLP 82
Query: 79 NVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMM 138
+ P A GA GA++ + N +A + + ++I ++ ++ +
Sbjct: 83 SSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFAR-- 140
Query: 139 EANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI 198
++ ++ D + G + + + + + E + +
Sbjct: 141 --------ESDVKVMCVDSA----------PDGCLHFSELTQADENEA--PQVDISPDDV 180
Query: 199 A-LGYTSGTTASPKGVVVSHRG----AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY 253
L Y+SGTT PKGV+++H+G + V L LPMFH +
Sbjct: 181 VALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNS 240
Query: 254 TWSLAALCG-TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 312
G + + + ++ I + V+ P V+ +IA SP+ L+++
Sbjct: 241 IMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAK-SPDLDKHDLSSL 299
Query: 313 VNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQA-- 368
+ + GAP L + K R+ YG+TE ++C + PF+ +
Sbjct: 300 RMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMC---LAFAKEPFDIKPGA 356
Query: 369 --RLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEA 426
+ ++ ++D T +P + GEI +RG +MKGYL +P+A
Sbjct: 357 CGTVVRNAEMK--------IVDPETGASLPRN--QPGEICIRGDQIMKGYLNDPEATSRT 406
Query: 427 F-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVA 485
GW H+GD+ D+ + I DRLK++I G ++ E+E +L HP + +AAVV
Sbjct: 407 IDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVG 466
Query: 486 RPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSAT 544
DE GE P AFV ++ + +++ ++ ++ Y K V F A+PK+ +
Sbjct: 467 LKDEDAGEVPVAFVVKSEKS-QAT----EDEIKQYISKQVIFYKRIKRVFFIEAIPKAPS 521
Query: 545 GKIQKHLLRAKAK 557
GKI + L+ K
Sbjct: 522 GKILRKNLKEKLA 534
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 330 bits (848), Expect = e-106
Identities = 111/563 (19%), Positives = 202/563 (35%), Gaps = 69/563 (12%)
Query: 22 PLW-FINRAATLHPTRKSVVY----GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVI 76
+ + + ++ + Y++ + + AL + + +++
Sbjct: 24 SAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALC 83
Query: 77 APNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALK 136
+ N + G + N + L + +V ++ K
Sbjct: 84 SENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQK 143
Query: 137 MMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP------EFAWKP 190
+ T IVI D D + G + F++ P F
Sbjct: 144 --------TVTTIKTIVILDSKVDYR--------GYQCLDTFIKRNTPPGFQASSFKTVE 187
Query: 191 PEDEWQSIALGYTSGTTASPKGVVVSHRGAY---LMSLNGALIWGMNEGAVFLWTLPMFH 247
+ + Q + +SG+T PKGV ++H + + ++ G L +P H
Sbjct: 188 VDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247
Query: 248 GNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 307
G G T + L + + + + T P + + S
Sbjct: 248 GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNK-SELLNKY 306
Query: 308 PLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-- 363
L+N+V + + GAP + A++++ + YGLTE T PE D P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTS---AIIITPEGDDKPGA 363
Query: 364 -----FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 418
+A+ VID T + + + GE+ ++G +MKGY+
Sbjct: 364 SGKVVPLFKAK----------------VIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVN 405
Query: 419 NPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPL 477
NP+A +E GW H+GD+ + + I DRLK +I G + E+E VL HP
Sbjct: 406 NPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPS 465
Query: 478 VLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVF 536
+ +A V PD GE P A V L+ + ++V + +++ + + V F
Sbjct: 466 IFDAGVAGVPDPVAGELPGAVVVLESGK-NMT----EKEVMDYVASQVSNAKRLRGGVRF 520
Query: 537 -AALPKSATGKIQKHLLRAKAKE 558
+PK TGKI +R K+
Sbjct: 521 VDEVPKGLTGKIDGRAIREILKK 543
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 327 bits (841), Expect = e-105
Identities = 119/577 (20%), Positives = 216/577 (37%), Gaps = 74/577 (12%)
Query: 21 TPLW-FINRAATLHPTRKSVV-----YGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVS 74
+++A + + + + T+ + + R A A+ + + +
Sbjct: 20 GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIV 79
Query: 75 VIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEA 134
V + N + GA G + N N + ++ + VV V ++
Sbjct: 80 VCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNV 139
Query: 135 LKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDP------EFAW 188
K KL I+I D D +G F+ + P +F
Sbjct: 140 QK--------KLPIIQKIIIMDSKTD--------YQGFQSMYTFVTSHLPPGFNEYDFVP 183
Query: 189 KPPEDEWQSIALGYTSGTTASPKGVVVSHRG---AYLMSLNGALIWGMNEGAVFLWTLPM 245
+ + + + +SG+T PKGV + HR + + + + L +P
Sbjct: 184 ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPF 243
Query: 246 FHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT 305
HG G T + + + + ++ + + P + + A S
Sbjct: 244 HHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAK-STLID 302
Query: 306 ILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDS-- 361
L+N+ + + GAP + A++++ I YGLTE T PE D
Sbjct: 303 KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTS---AILITPEGDDKP 359
Query: 362 ------LPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKG 415
+PF +A+ V+D T + + + GE+ +RG +M G
Sbjct: 360 GAVGKVVPF-FEAK----------------VVDLDTGKTLGVN--QRGELCVRGPMIMSG 400
Query: 416 YLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 474
Y+ NP+A +GW HSGD+A D + I DRLK +I G ++ E+E +L
Sbjct: 401 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460
Query: 475 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WVPKS 533
HP + +A V PD+ GE P A V L+ + +++ + +++ + +
Sbjct: 461 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGK-TMT----EKEIVDYVASQVTTAKKLRGG 515
Query: 534 VVF-AALPKSATGKIQKHLLRAKAKEMGPVKMIKGKL 569
VVF +PK TGK+ +R + K K KL
Sbjct: 516 VVFVDEVPKGLTGKLDARKIREILIKA--KKGGKSKL 550
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 298 bits (764), Expect = 2e-90
Identities = 126/559 (22%), Positives = 224/559 (40%), Gaps = 52/559 (9%)
Query: 21 TPLW-FINRAATLHPTRKSVVYGS--KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIA 77
L +I + + T+ ++ G YT+ + R+ A+ KL + V ++
Sbjct: 61 LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLL 120
Query: 78 PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKM 137
PN P + A GA + N +A +++ ++I + + +
Sbjct: 121 PNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQN- 179
Query: 138 MEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQS 197
+ + +ES + G + + + ++ +
Sbjct: 180 -------DDGVVIVCIDDNESVPIPE-------GCLRFTELTQSTTEASEVIDSVEISPD 225
Query: 198 --IALGYTSGTTASPKGVVVSHRG----AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 251
+AL Y+SGTT PKGV+++H+G + V L LPMFH
Sbjct: 226 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYAL 285
Query: 252 SYTWSLAALCG-TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 310
+ G + + + + I VT P ++ AIA S E L+
Sbjct: 286 NSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAK-SSETEKYDLS 344
Query: 311 NVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQA 368
++ V + AP L A++ K ++ YG+TE ++ + PF ++
Sbjct: 345 SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMS---LGFAKEPFPVKS 401
Query: 369 ----RLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424
+ ++ ++D T + + GEI +RG +MKGYL NP A
Sbjct: 402 GACGTVVRNAEMK--------IVDPDTGDSLSRN--QPGEICIRGHQIMKGYLNNPAATA 451
Query: 425 EAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483
E +GW H+GD+ + D+ + I DRLK++I G ++ E+E +L HP + + AV
Sbjct: 452 ETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAV 511
Query: 484 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKS 542
VA +E GE P AFV +++ +DV +F ++ Y V F ++PK+
Sbjct: 512 VAMKEEAAGEVPVAFVVKSKDSEL-----SEDDVKQFVSKQVVFYKRINKVFFTESIPKA 566
Query: 543 ATGKIQKHLLRAKAKEMGP 561
+GKI + LRAK
Sbjct: 567 PSGKILRKDLRAKLANGLG 585
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 265 bits (679), Expect = 1e-81
Identities = 116/544 (21%), Positives = 200/544 (36%), Gaps = 78/544 (14%)
Query: 43 SKHYTWHQTYRRCRRFASALS-KLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSIN 101
+ + + ++ A+ LS + G V+V+ P VP + G AG +
Sbjct: 71 ELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGT 130
Query: 102 IRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDS 161
I++ +T + + L + + ++ E + + L+ +++ ++SCD
Sbjct: 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS-----LR--IKLLVSEKSCD- 182
Query: 162 KQLEYALARGAIEYEKFLETGDPEF--AWKPPEDEWQSIALGYTSGTTASPKGVVVSHRG 219
G + ++K L ++ + A+ +TSGT+ PK S+
Sbjct: 183 ---------GWLNFKKLLNEASTTHHCVETGSQE---ASAIYFTSGTSGLPKMAEHSYSS 230
Query: 220 AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWS--LAAL-CGTSICL---RQVTA 272
L + A G+ + WT+ GW + G + +
Sbjct: 231 LGLKAKMDAGWTGLQASDIM-WTIS---DTGWILNILCSLMEPWALGACTFVHLLPKFDP 286
Query: 273 KAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP-LTNVVNVNTAGAPPPPSLL-FAM 330
+ ++++ + AP+V + P L N V T G P L
Sbjct: 287 LVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCV---TVGESLLPETLENWR 343
Query: 331 SQKGFRITHTYGLTELTGPASVCAW---------KPEWDSLPFETQARLNARQGVRTICL 381
+Q G I +YG TE V
Sbjct: 344 AQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTA----AS-----------CYD---- 384
Query: 382 DGLDVIDARTNQPVPADGKTIGEIVMRGS-----CVMKGYLKNPKANEEAFANGWFHSGD 436
+ +ID + N +P T G+I +R + GY+ NP ++ GD
Sbjct: 385 --VQIIDDKGN-VLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGD 439
Query: 437 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC 496
+K D Y + R D+I S G I EVE L HP V+E AV++ PD GE
Sbjct: 440 RGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVK 499
Query: 497 AFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAK 555
AFV L + D +L +++ + ++ Y P+ + F LPK+ TGKIQ+ LR K
Sbjct: 500 AFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559
Query: 556 AKEM 559
+M
Sbjct: 560 EWKM 563
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 1e-70
Identities = 111/547 (20%), Positives = 191/547 (34%), Gaps = 82/547 (14%)
Query: 43 SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINI 102
K +T+ + A+ K IG G V + + + G GA+
Sbjct: 84 EKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATH 143
Query: 103 RLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSK 162
L + + + A +++ E + E+ + G + V GD
Sbjct: 144 MLKTRDIVYRIEKAGLKMIVCIAED-DVPEQVDEAHA--ECGDIPLKKAKVGGDV----- 195
Query: 163 QLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQS---IALGYTSGTTASPKGVVVSHRG 219
G I++ K LE P F E ++ + ++SGT PK V +
Sbjct: 196 ------LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTY 249
Query: 220 AYLMSLNGALIWGMNEGAVFLWTL--PMFHGNGWSY-TWS--LAAL-CGTSICL---RQV 270
L + + + +T+ GW W G ++ + +
Sbjct: 250 PLGHILTAKYWQNVEDDGLH-YTVADS-----GWGKCVWGKLYGQWIAGCAVFVYDYDRF 303
Query: 271 TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP-LTNVVNVNTAGAPPPPSLL-F 328
AK + + +GVT FCA P + + L V AG P P +
Sbjct: 304 EAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAV---VAGEPLNPEVFNR 360
Query: 329 AMSQKGFRITHTYGLTELTGPASVCAW---------KPEWDSLPFETQARLNARQGVRTI 379
+ G ++ +G TE + W KP P G +
Sbjct: 361 FLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKP----TP-----------GYK-- 403
Query: 380 CLDGLDVIDARTNQPVPADGKTIGEIVMRG-----SCVMKGYLKNPKANEEAFANGWFHS 434
++++D GEIV+ + Y K+P+ EE + +G++H+
Sbjct: 404 ----IELMDRDGR-LCEVG--EEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHT 456
Query: 435 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 494
GD+A D Y+ R D+I + G + EVE L HP VLE A+ PD G+
Sbjct: 457 GDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQV 516
Query: 495 PCAFVTLKP--EADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHL 551
A + L + L ++ + Y P+ + F LPK+ +GKI++
Sbjct: 517 IKATIVLTKDYTPSD----SLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVE 572
Query: 552 LRAKAKE 558
+R K +
Sbjct: 573 IRDKDQS 579
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 1e-45
Identities = 109/591 (18%), Positives = 198/591 (33%), Gaps = 110/591 (18%)
Query: 28 RAATLHPTRKSVVY----GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAM 83
A P +KS + + T+ Q + + A+ L G V ++ +
Sbjct: 19 LRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPL 78
Query: 84 YEAQFGAPMAGAV--------LNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 135
+A G AG + + + I++++ +V++ + +
Sbjct: 79 IQAFLGCLYAGCIAVPIYPPAQEKLLDKAQR-----IVTNSKPVIVLMIADHI----KKF 129
Query: 136 KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW 195
E N+ K I + + +W+P +
Sbjct: 130 TADELNTNPKFLKIPAIALESIE-----------------------LNRSSSWQPTSIKS 166
Query: 196 QSIA-LGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFL-WTLPMFHGNG 250
IA L YTSG+T PKGV+VSH L+ N I + MN+ + W LP H G
Sbjct: 167 NDIAFLQYTSGSTMHPKGVMVSHHN--LLD-NLNKIFTSFHMNDETIIFSW-LPPHHDMG 222
Query: 251 WSYTWSLAALCGTSICLRQVTAKAVY-------TAIATHGVTHFCAAP-----VVLNAIA 298
G + ++ + I + T +P + I
Sbjct: 223 LIGCILTPIYGGIQAIM--MSPFSFLQNPLSWLKHITKYKATI-SGSPNFAYDYCVKRIR 279
Query: 299 NASPEDTILPLTNVVNVNTAGAPPPPSLL--F--AMSQKGFR---ITHTYGLTELTGPAS 351
E L L++ V P + F A + GFR YGL E T +
Sbjct: 280 EEKKEG--LDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVT 337
Query: 352 VCAWKPEWDSLPFET------QARLNARQGVRTICL-------DGLDVIDARTNQPVPAD 398
+ +L + + L + +ID T P D
Sbjct: 338 GGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFD 397
Query: 399 GKTIGEIVMRGSCVMKGYLKNPKANEEAFAN---------GWFHSGDLAVKHPDNYIEIK 449
+GEI ++ + V KGY P+ AFA + +GDL H +N + +
Sbjct: 398 --QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVT 454
Query: 450 DRLKDVIISGGENISSVEVEK-VLYLHPLVL--EAAVVARPDERWGESPCAFVTLKPEAD 506
R+KD+II G+N ++E +++ + + A +E + D
Sbjct: 455 GRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMD 514
Query: 507 ELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA---ALPKSATGKIQKHLLRA 554
++ + L ++ + ++V A+P + +GKI+++ R
Sbjct: 515 DVAQDNLFNEIFELVYENH--QLEVHTIVLIPLKAMPHTTSGKIRRNFCRK 563
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-28
Identities = 87/474 (18%), Positives = 145/474 (30%), Gaps = 98/474 (20%)
Query: 28 RAATLHPTRKSVVY---------GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAP 78
A L P + + + TW Q YRR A LS+ G V + AP
Sbjct: 32 ACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAP 90
Query: 79 NVPAMYEAQFGAPMAGAV---LNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEAL 135
A GA AG + L+ + +LS +S ++ + +
Sbjct: 91 QGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHV 150
Query: 136 KMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEW 195
P +I + L+ P + EDE+
Sbjct: 151 A-----RRPGESPPSIIEVDL----------------------LDLDAPN-GYTFKEDEY 182
Query: 196 QSIA-LGYTSGTTASPKGVVVSHRG------AYLMSLNGALIWGMNEGAVFL-WTLPMFH 247
S A L YTSG+T +P GVV+SH+ + + + W LP +H
Sbjct: 183 PSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSW-LPFYH 241
Query: 248 GNGWSYTWSLAALCGTSICL---RQVTAKAVY--TAIATHGVTHFCAAP-----VVLNAI 297
G L G L + +A+ AAP +
Sbjct: 242 DMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAF-SAAPNFAFELAARRT 300
Query: 298 ANASPEDTILPLTNVVNVNTAGAPPPPSLL--F--AMSQKGFR---ITHTYGLTELTGPA 350
+ L N++ + + + + F ++ + I +Y L E T
Sbjct: 301 TDDDMAG--RDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYV 358
Query: 351 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLD-------------VIDARTNQPVPA 397
+ +++ F+T++ L+A ++D+ T P
Sbjct: 359 ATSKPGQPPETVDFDTES-LSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPD 417
Query: 398 DGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN------------GWFHSGDLAV 439
T+GEI + G V GY + P +E F W +GD
Sbjct: 418 G--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGF 469
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 4e-26
Identities = 79/374 (21%), Positives = 139/374 (37%), Gaps = 52/374 (13%)
Query: 202 YTSGTTASPKGVVVSHRGA--YLMSLNGALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLA 258
+TSGTT PKGV +SH + + + + + L P F + + +L
Sbjct: 152 FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTL- 210
Query: 259 ALCGTSICLR----QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 314
G ++ K ++T IA V + + P + S + + + +
Sbjct: 211 -ALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAM-LSDDFCQAKMPALTH 268
Query: 315 VNTAGAPPPPSLL--FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 372
G S +I + YG TE T ++ A + T+ ++
Sbjct: 269 FYFDGEELTVSTARKLFERFPSAKIINAYGPTEAT--VALSAIE--------ITREMVDN 318
Query: 373 RQGV---RTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN 429
+ +ID + + + G GEI++ G V KGYL NP+ EAF
Sbjct: 319 YTRLPIGYPKPDSPTYIIDED-GKELSS-G-EQGEIIVTGPAVSKGYLNNPEKTAEAFFT 375
Query: 430 GWF----HSGDLAVKHPDNYIEIKDRLKD--VIISG-----GENISSVEVEKVLYLHPLV 478
H+GD+ DN + RL D + +G + V + L P+V
Sbjct: 376 FKGQPAYHTGDIGSLTEDNILLYGGRL-DFQIKYAGYRIELED------VSQQLNQSPMV 428
Query: 479 LEAAVVARPDERWGESP--CAFVTLKPEADELDKG--KLAEDVSKFCRAKMPSYWVPKSV 534
A V R ++ + A++ +K E +L + + + M SY +P
Sbjct: 429 ASAVAVPRYNKE-HKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKF 487
Query: 535 VF-AALPKSATGKI 547
++ +LP + GKI
Sbjct: 488 LYRDSLPLTPNGKI 501
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 77/390 (19%), Positives = 124/390 (31%), Gaps = 69/390 (17%)
Query: 202 YTSGTTASPKGVVVSHRG--------AYLMSLNGALIWGMNEGAVFL-WTLPMFHGNGWS 252
YTSG+T +PKGV VS L+ + FL F +
Sbjct: 182 YTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE 241
Query: 253 YTWSLAALCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 310
+ G R + GVTH P +L+ PED
Sbjct: 242 MFLAW--RFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTG-LVPED----AP 294
Query: 311 NVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 369
++V + G P S + + YG TE ++ + R
Sbjct: 295 HLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTE----VTIGC-----------SAGR 339
Query: 370 LNARQGVRTI--CLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 425
+ R I L V+ +N+ V G GE+V+ GS V GYL P A +
Sbjct: 340 ILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKK-G-MAGELVIEGSLVANGYLNRPDA--K 395
Query: 426 AFANGWFH----SGDLAVKHPDNYIEIKDRLKD-VIISG-----GENISSVEVEKVLYLH 475
F + +GD+ D+ I R + V + G G EV +V+
Sbjct: 396 GFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELG------EVSEVIRSL 449
Query: 476 PLVLEAAVVARPDERWGESP--CAFVTLKPEAD-------ELDKGKLAEDVSKFCRAKMP 526
V + +FV A + ++ + + C +P
Sbjct: 450 SPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLP 509
Query: 527 SYWVPKSVVF-AALP-KSATGKIQKHLLRA 554
+Y VP ++ + +P + + K L
Sbjct: 510 AYMVPDFIIPISFIPLRDTSAKTDAKALEH 539
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 8e-25
Identities = 82/377 (21%), Positives = 137/377 (36%), Gaps = 72/377 (19%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIW-GMNEGAVFLWTLPM-FHGNGWSYTWSLAA 259
YTSGTT PKG + +H + L + + ++ FL F + + S+
Sbjct: 614 YTSGTTGKPKGNITTHAN--IQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASM-- 669
Query: 260 LCGTSICLR----QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNV 315
L + + + + + I V A + N + +A + + + +
Sbjct: 670 LNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW----MKGLRCI 725
Query: 316 NTAGAPPPPSLL--FAMSQKGFRITHTYGLTELTGPASVCA-WKPEWDSLPFETQARL-- 370
G + ++ + YG TE +V A
Sbjct: 726 LFGGERASVPHVRKALRIMGPGKLINCYGPTE----GTVFATA---HVVHDLPDSISSLP 778
Query: 371 ------NARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424
NA + +++ + +Q P G +GE+ + G V KGY+ +
Sbjct: 779 IGKPISNAS----------VYILNEQ-SQLQPF-G-AVGELCISGMGVSKGYVNRADLTK 825
Query: 425 EAFANGWFH-------SGDLAVKHPDNYIEIKDRLKD-VIISG-----GENISSVEVEKV 471
E F F +GDLA PD IE R+ D V I G E+EK
Sbjct: 826 EKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELE------EIEKQ 879
Query: 472 LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP 531
L +P V +A VVA E S A++ + + AEDV + ++P+Y VP
Sbjct: 880 LQEYPGVKDAVVVADRHESGDASINAYLVNRTQLS-------AEDVKAHLKKQLPAYMVP 932
Query: 532 KSVVF-AALPKSATGKI 547
++ F LP + GK+
Sbjct: 933 QTFTFLDELPLTTNGKV 949
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 4e-24
Identities = 79/373 (21%), Positives = 134/373 (35%), Gaps = 70/373 (18%)
Query: 202 YTSGTTASPKGVVVSHRGA--YLMSLNGALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLA 258
YTSGTT +PKG ++ H+G + +L + E + F + W +L
Sbjct: 189 YTSGTTGNPKGTMLEHKGISNLKVFFENSL--NVTEKDRIGQFASISFDASVWEMFMAL- 245
Query: 259 ALCGTSICLR----QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 314
L G S+ + I +T P + + + IL + ++
Sbjct: 246 -LTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL----DPERILSIQTLI- 299
Query: 315 VNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQ 374
TAG+ PSL+ + + YG TE ++CA T
Sbjct: 300 --TAGSATSPSLVNKWKE-KVTYINAYGPTE----TTICA-----------TTWVATKET 341
Query: 375 GVRTIC----LDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 428
++ + ++D Q G GE+ + G + +GY K P+ + F
Sbjct: 342 IGHSVPIGAPIQNTQIYIVDEN-LQLKSV-G-EAGELCIGGEGLARGYWKRPELTSQKFV 398
Query: 429 NGWFH-------SGDLAVKHPDNYIEIKDRLKD-VIISG-----GENISSVEVEKVLYLH 475
+ F +GD A D IE R+ + V I G E VE +L H
Sbjct: 399 DNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEE------VESILLKH 452
Query: 476 PLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV 535
+ E AV D + CA+ + E + +F ++P+Y +P +
Sbjct: 453 MYISETAVSVHKDHQEQPYLCAYFVSEKHIP-------LEQLRQFSSEELPTYMIPSYFI 505
Query: 536 F-AALPKSATGKI 547
+P ++ GKI
Sbjct: 506 QLDKMPLTSNGKI 518
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-23
Identities = 82/371 (22%), Positives = 144/371 (38%), Gaps = 53/371 (14%)
Query: 202 YTSGTTASPKGVVVSHRGA--YLMSLNGALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLA 258
YTSG+T +PKGV +S + + ++ G +FL P F + L
Sbjct: 150 YTSGSTGNPKGVQISAANLQSFTDWICADF--PVSGGKIFLNQAPFSFDLSVMDLYPCL- 206
Query: 259 ALCGTSICL----RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 314
G ++ K ++ + G+ + + P + P + L +
Sbjct: 207 -QSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCL-MDPGFSQDLLPHADT 264
Query: 315 VNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 372
G P S+ A+ ++ +I +TYG TE A+V E + +
Sbjct: 265 FMFCGEVLPVSVAKALLERFPKAKIFNTYGPTE----ATV-------AVTSVEITNDVIS 313
Query: 373 RQGVRTI--CLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF- 427
R + ++ ++D QP+P G GEIV+ G V +GYL P+ E+AF
Sbjct: 314 RSESLPVGFAKPDMNIFIMDEE-GQPLPE-G-EKGEIVIAGPSVSRGYLGEPELTEKAFF 370
Query: 428 AN-G--WFHSGDLAVKHPDNYIEIKDRLKD--VIISG-----GENISSVEVEKVLYLHPL 477
++ G + +GD A D I + RL D + + G E +E +
Sbjct: 371 SHEGQWAYRTGD-AGFIQDGQIFCQGRL-DFQIKLHGYRMELEE------IEFHVRQSQY 422
Query: 478 VLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF- 536
V A V+ E A + + E + +L + K A +P+Y +P+ ++
Sbjct: 423 VRSAVVIPYQPNGTVEYLIAAIVPEEHEFE-KEFQLTSAIKKELAASLPAYMIPRKFIYQ 481
Query: 537 AALPKSATGKI 547
+ +A GKI
Sbjct: 482 DHIQMTANGKI 492
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 6e-23
Identities = 74/377 (19%), Positives = 132/377 (35%), Gaps = 65/377 (17%)
Query: 202 YTSGTTASPKGVVVSHRGA--YLMSLNGALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLA 258
YTSG+T +PKGV +++ + + G VFL P F + SL
Sbjct: 151 YTSGSTGNPKGVQITYNCLVSFTKWAVEDF--NLQTGQVFLNQAPFSFDLSVMDIYPSL- 207
Query: 259 ALCGTSICLR----QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVN 314
+ G ++ K ++ ++ + + + P + L N+
Sbjct: 208 -VTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCL-MEASFSESMLPNMKT 265
Query: 315 VNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA 372
G P + + ++ I +TYG TE A+V +
Sbjct: 266 FLFCGEVLPNEVARKLIERFPKATIMNTYGPTE----ATV-------AVTGIHVTEEVLD 314
Query: 373 RQGVRTICLDG-------LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEE 425
+ + G L ++ P G GEIV+ G V GYL +P+ E+
Sbjct: 315 QYKSLPV---GYCKSDCRLLIMKED-GTIAPD-G-EKGEIVIVGPSVSVGYLGSPELTEK 368
Query: 426 AFANGWFH-------SGDLAVKHPDNYIEIKDRLKD--VIISG-----GENISSVEVEKV 471
AF +GD A + + RL D + + G E +E
Sbjct: 369 AFT---MIDGERAYKTGD-AGYVENGLLFYNGRL-DFQIKLHGYRMELEE------IEHH 417
Query: 472 LYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP 531
L V A +V + A V + E + KL + K ++P+Y +P
Sbjct: 418 LRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFE-KEFKLTSAIKKELNERLPNYMIP 476
Query: 532 KSVVF-AALPKSATGKI 547
+ ++ +++P + GK+
Sbjct: 477 RKFMYQSSIPMTPNGKV 493
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 1e-21
Identities = 63/375 (16%), Positives = 114/375 (30%), Gaps = 72/375 (19%)
Query: 202 YTSGTTASPKGVVVSHRG-AYLMSLNGALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAA 259
++SGTT PK + +H G L FL P+ F +L
Sbjct: 171 FSSGTTGRPKAIACTHAGITRLCLGQSF--LAFAPQMRFLVNSPLSFDAATLEIWGAL-- 226
Query: 260 LCGTSICLR---QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVN 316
L G L + + I G + N + + P+ L + +
Sbjct: 227 LNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDC----LGGLRQLL 282
Query: 317 TAGAPPPPSLL--FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQ 374
T G + + + + YG TE + +
Sbjct: 283 TGGDILSVPHVRRALLRHPRLHLVNGYGPTE----NTTFT-----------CCHVVTDDD 327
Query: 375 GVRTIC-----LDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 427
+ G ++D Q + GEIV G+ + +GY + +F
Sbjct: 328 LEEDDIPIGKAIAGTAVLLLDEH-GQEIAEPD-RAGEIVAFGAGLAQGYRNDAARTRASF 385
Query: 428 ANGWFH--------SGDLAVKHPDNYIEIKDRLKD-VIISG-----GENISSVEVEKVLY 473
+ +GD A + R V ++G +E+
Sbjct: 386 VELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPA------LEQRFR 439
Query: 474 LHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKS 533
P +L+ A++ R + CA+ +AD + ++P++ P +
Sbjct: 440 RQPGILDCALLVRERNGVKQLLCAWT---GKADASP---------QALLRQLPTWQRPHA 487
Query: 534 VVF-AALPKSATGKI 547
V ALP +A GK+
Sbjct: 488 CVRVEALPLTAHGKL 502
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 3/129 (2%)
Query: 430 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489
+ SGD A + D Y I R+ DV+ G + + E+E L HP + EAAVV P
Sbjct: 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHA 553
Query: 490 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQ 548
G++ A+VTL + +L +V + R ++ P + + +LPK+ +GKI
Sbjct: 554 IKGQAIYAYVTLNHGEEPSP--ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIM 611
Query: 549 KHLLRAKAK 557
+ +LR A
Sbjct: 612 RRILRKIAA 620
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 2e-19
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 430 GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489
G++ +GD A K D YI I R+ DV+ G +S+ E+E + P+V E AVV D+
Sbjct: 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 562
Query: 490 RWGESPCAFVTLKP-----EADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSA 543
G++ AFV LK A + + + + + R + + PK ++ LPK+
Sbjct: 563 LTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTR 622
Query: 544 TGKIQKHLLRAKAK 557
+GKI + +LR
Sbjct: 623 SGKIMRRILRKILA 636
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 74.4 bits (182), Expect = 2e-14
Identities = 32/272 (11%), Positives = 70/272 (25%), Gaps = 45/272 (16%)
Query: 175 YEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLM---SLNGALIW 231
L + + GTT +PK VV + ++G
Sbjct: 71 ISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHR 130
Query: 232 GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIA----------- 280
L +P + A G + + V +++
Sbjct: 131 PGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYT 190
Query: 281 ------------THGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLF 328
+ P VL + PE + ++ + G +
Sbjct: 191 HHLVDQVQNTLMNQDIRFLVTTPPVLRELL-KRPEVVLQMKQSLAQITLGGTELNLDEIK 249
Query: 329 AMSQK---GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLD 385
++ + + +YG T G + E + +++ +
Sbjct: 250 FIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFS---PFITYD-------- 298
Query: 386 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYL 417
V+D+ T Q V G G +++ + +
Sbjct: 299 VVDSITAQTVE-YG-ERGNVIV--THLSPWAF 326
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 1e-08
Identities = 89/632 (14%), Positives = 172/632 (27%), Gaps = 218/632 (34%)
Query: 4 VKDIDDLPK----------ISANYTALTPLWFINRAATLHPTRKSVVYG------SKHYT 47
KD+ D+PK I + A++ + TL ++ +V +Y
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 48 W---------HQTYRRCRRFASALSKLSIGLGTTVSVIAP-NVP----------AMYEAQ 87
+ Q R + +L V A NV A+ E +
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLY----NDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 88 -------FGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEA 140
G + G+ T VA V + + M+
Sbjct: 149 PAKNVLIDG--VLGS---------GKTWVA--------LDVCLSYKV-------QCKMDF 182
Query: 141 N----SEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQ 196
+ +P ++ + L+ K L DP W D
Sbjct: 183 KIFWLNLKNCNSPETVL--------EMLQ-----------KLLYQIDPN--WTSRSDHSS 221
Query: 197 SIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI----WGMNEGAVFLWTLPMFHGNGWS 252
+I L S + ++ S Y L L+ N F+ +
Sbjct: 222 NIKLRIHSIQAE-LRRLLKSKP--YENCL---LVLLNVQ--NA-----KAWNAFNLS--- 265
Query: 253 YTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANA-SPEDTILPLTN 311
C + R K V ++ TH + L+ + +P++ L
Sbjct: 266 --------CKILLTTRF---KQVTDFLSAATTTH-----ISLDHHSMTLTPDEVKSLLLK 309
Query: 312 VVNVNTAGAPP------PPSL-LFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPF 364
++ P P L + A S + T W W +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT----------------WDN-WKHVNC 352
Query: 365 ETQARLNARQGVRTICLDGLDVIDART----------NQPVPADGKTIGEIVMRGSCVMK 414
+ + L+ L+ + R + +P + ++
Sbjct: 353 DKLTT------IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT--ILL-SLI-------- 395
Query: 415 GYLKNPKANEEAFANGWFHSGDLAVKHPDNY-IEIKDRLKDVIISGGENISSVEVEKVLY 473
+ K++ N H L K P I I ++ V++E
Sbjct: 396 -WFDVIKSDVMVVVNK-LHKYSLVEKQPKESTISIPSIYLEL---------KVKLENEYA 444
Query: 474 LHPLVLEAAVVARPDERWGESPCAFVTLKPEADE---------LDKGKLAEDVSKFCRAK 524
LH +++ + + + P P D+ L + E ++ F R
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIP-------PYLDQYFYSHIGHHLKNIEHPERMTLF-RMV 496
Query: 525 MPSY-WVPKSVVFAALPKSATGKIQKHLLRAK 555
+ ++ + + + +A+G I L + K
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 569 | |||
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.96 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.51 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.48 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.82 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.8 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.73 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.93 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.47 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 91.26 |
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-81 Score=656.55 Aligned_cols=511 Identities=24% Similarity=0.363 Sum_probs=401.7
Q ss_pred cccccccccCHHHHHHHhhhhCCCceeeeeCC--------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhH
Q 008342 12 KISANYTALTPLWFINRAATLHPTRKSVVYGS--------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAM 83 (569)
Q Consensus 12 ~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~--------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~ 83 (569)
.++..++++|+.++|+++++++|+++|+++.+ +++||+||.++++++|++|.+.|+++||+|+++++|++++
T Consensus 11 ~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~ 90 (549)
T 3g7s_A 11 FPSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY 90 (549)
T ss_dssp CCCCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred CCCCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 44566778999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhh
Q 008342 84 YEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ 163 (569)
Q Consensus 84 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (569)
++++|||+++|++++|+++.++.+++.+++++++++++|++......+....... ....++.++..
T Consensus 91 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------ 156 (549)
T 3g7s_A 91 VMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--------GVERVFVVGGE------ 156 (549)
T ss_dssp HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--------CCCEEEEETCS------
T ss_pred HHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--------CCcEEEEeCCC------
Confidence 9999999999999999999999999999999999999999998776665543322 23445554432
Q ss_pred hHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcC
Q 008342 164 LEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTL 243 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~ 243 (569)
...+.+++..............++++++|+|||||||.||+|.++|+++..........+++.++|++++.+
T Consensus 157 --------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~ 228 (549)
T 3g7s_A 157 --------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCM 228 (549)
T ss_dssp --------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCS
T ss_pred --------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeC
Confidence 134555555444332222223348999999999999999999999999999999888899999999999999
Q ss_pred CccchhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCC--CCCcccceeeeecCCC
Q 008342 244 PMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT--ILPLTNVVNVNTAGAP 321 (569)
Q Consensus 244 p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~--~~~l~~l~~~~~~g~~ 321 (569)
|++|.+++...+.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+...... .. ++++|.+++||++
T Consensus 229 p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~~~~gg~~ 307 (549)
T 3g7s_A 229 PMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYD-WSYLKVFATGAWP 307 (549)
T ss_dssp CTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCC-CTTCCEEEEESSC
T ss_pred cHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCC-ccceeEEEeCCcc
Confidence 99999999887777788888888888999999999999999999999999999987643222 33 7899999999999
Q ss_pred CCHHHHHHhhh-----cC---CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCc
Q 008342 322 PPPSLLFAMSQ-----KG---FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQ 393 (569)
Q Consensus 322 l~~~~~~~~~~-----~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~ 393 (569)
+++++.+++.+ ++ +++++.||+||++++++.+.. .......++|.|++++ +++|+|+++++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~----------~~~~~~~~~G~p~~~~-~~~i~d~~~g~ 376 (549)
T 3g7s_A 308 VAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP----------LRLDKSTTQGVPMSDI-ELKVISLEDGR 376 (549)
T ss_dssp CCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG----------GGGGGTTSCCEECTTC-EEEEECSSSCC
T ss_pred CCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCc----------cccCcCCCccccCCCC-EEEEEeCCCCc
Confidence 99999999874 35 899999999999977665431 1123457899999999 69999977899
Q ss_pred ccCCCCCceEEEEEecCcccccccCCcchhhhhh---cCC--eeecCceeEEcCCCeEEEecccCceEEeCceeechHHH
Q 008342 394 PVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF---ANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEV 468 (569)
Q Consensus 394 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~g--~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~i 468 (569)
+++.| +.|||+|+|++++.|||++++.+.+.| .+| ||+|||+|++++||+++++||.||+||++|++|+|.+|
T Consensus 377 ~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI 454 (549)
T 3g7s_A 377 ELGVG--ESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFEL 454 (549)
T ss_dssp EECTT--CCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHH
T ss_pred CCCCC--CceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHH
Confidence 99988 789999999999999999999999998 677 99999999999999999999999999999999999999
Q ss_pred HHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcc
Q 008342 469 EKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKI 547 (569)
Q Consensus 469 E~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi 547 (569)
|++|.+||.|.+++|++.+++..|+.+++++++.++... ....++|+++|+++|+.|++|..+.+++ ||+|++||+
T Consensus 455 E~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~---~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi 531 (549)
T 3g7s_A 455 EALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRG---KVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKL 531 (549)
T ss_dssp HHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTT---SCCHHHHHHHHHTTCC-----CCCCEEEECC-------
T ss_pred HHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccC---cCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCE
Confidence 999999999999999999999889999999998876321 1156889999999999999999988777 999999999
Q ss_pred cHHHHHHHHHhcCC
Q 008342 548 QKHLLRAKAKEMGP 561 (569)
Q Consensus 548 ~r~~l~~~~~~~~~ 561 (569)
+|++|++++.+..-
T Consensus 532 ~R~~L~~~~~~~~~ 545 (549)
T 3g7s_A 532 LRRLLREKEAEGHH 545 (549)
T ss_dssp --------------
T ss_pred eHHHHHHHhhcccc
Confidence 99999998876543
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-80 Score=648.85 Aligned_cols=504 Identities=24% Similarity=0.371 Sum_probs=433.0
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYG--SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
++|+.++|.++++++|+++|+++. ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav 100 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence 589999999999999999999986 589999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHH
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYE 176 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (569)
++|+++.++.+++.+++++++++++|++......+........ ..++.++... .+...++
T Consensus 101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-----------~~~~~~~ 160 (536)
T 3ni2_A 101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD---------VKVMCVDSAP-----------DGCLHFS 160 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHT---------CEEEESSCCC-----------TTCEETH
T ss_pred EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcC---------ceEEEecCCC-----------CCccCHH
Confidence 9999999999999999999999999999988777766544332 2344444321 1223455
Q ss_pred hhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHh----HhCCCCCcEEEEcCCccchhhHH
Q 008342 177 KFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL----IWGMNEGAVFLWTLPMFHGNGWS 252 (569)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~ 252 (569)
++........ ......++++++|+|||||||.||+|.+||+++......... .+++.++|++++.+|++|.+++.
T Consensus 161 ~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 239 (536)
T 3ni2_A 161 ELTQADENEA-PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALN 239 (536)
T ss_dssp HHHTSCGGGC-CCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHH
T ss_pred HHhhcccccc-ccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHH
Confidence 5544332221 223457789999999999999999999999999887765543 35688999999999999999986
Q ss_pred HH-HHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhh
Q 008342 253 YT-WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS 331 (569)
Q Consensus 253 ~~-~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~ 331 (569)
.. +..+..|+++++.+.+++..+++.++++++|++.++|+++..+++........ ++++|.+++||+++++++.++++
T Consensus 240 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gGe~l~~~~~~~~~ 318 (536)
T 3ni2_A 240 SIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHD-LSSLRMIKSGGAPLGKELEDTVR 318 (536)
T ss_dssp HTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSC-CTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCC-CccceEEEECCCCCCHHHHHHHH
Confidence 54 45556677888878899999999999999999999999999999886655444 89999999999999999999998
Q ss_pred h-c-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEec
Q 008342 332 Q-K-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 409 (569)
Q Consensus 332 ~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~ 409 (569)
+ + ++++++.||+||++++++.+..... .......+++|.|++++ +++|+|++++++++.| +.|||+++|
T Consensus 319 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g 389 (536)
T 3ni2_A 319 AKFPQARLGQGYGMTEAGPVLAMCLAFAK------EPFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRG 389 (536)
T ss_dssp HHCTTSEEEEEEECGGGSSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEES
T ss_pred HHCCCCCccccccccccchhhhcccccCC------ccccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeC
Confidence 4 4 8999999999999977665532111 01112347899999999 6999998889999988 789999999
Q ss_pred CcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecC
Q 008342 410 SCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488 (569)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 488 (569)
++++.||+++++.+.+.| .+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||.|.+++|++.++
T Consensus 390 ~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~ 469 (536)
T 3ni2_A 390 DQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKD 469 (536)
T ss_dssp TTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred cccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeec
Confidence 999999999999999999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
+..|+.++++++..++... ..++|+++|+++|+.|++|..+.+++ ||+|++||++|++|++++.+
T Consensus 470 ~~~g~~~~a~vv~~~~~~~-----~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 470 EDAGEVPVAFVVKSEKSQA-----TEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp TTTEEEEEEEEEECTTCCC-----CHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred CCCCceeEEEEEecCCCCC-----CHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 9889999999998876544 56889999999999999999998877 99999999999999987754
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-80 Score=645.60 Aligned_cols=503 Identities=29% Similarity=0.402 Sum_probs=431.3
Q ss_pred cccccccCHHHHHHHhhhhCCCceeeeeCCe--eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhh
Q 008342 14 SANYTALTPLWFINRAATLHPTRKSVVYGSK--HYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAP 91 (569)
Q Consensus 14 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 91 (569)
......+|+.++|+++++++|+++|+++.++ ++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+
T Consensus 10 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 10 DDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp --CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 4456688999999999999999999999876 99999999999999999999999999999999999999999999999
Q ss_pred hcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcc
Q 008342 92 MAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARG 171 (569)
Q Consensus 92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (569)
++|++++|+++.++.+++.+++++++++++|++......+........ ....++.+..
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--------------- 147 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQAD-------PPGTVTDWIG--------------- 147 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSS-------CCTTCCEEEE---------------
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccC-------CccEEEEccC---------------
Confidence 999999999999999999999999999999999887766655433222 1111222111
Q ss_pred hhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhH
Q 008342 172 AIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 251 (569)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 251 (569)
...+.+.+....... ......++++++|+|||||||.||+|++||+++..........+++.++|++++.+|++|.+++
T Consensus 148 ~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~ 226 (517)
T 3r44_A 148 ADSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAAL 226 (517)
T ss_dssp HHHHHHHHHHCCCCC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHH
T ss_pred cccHHHHhhccCcCC-CCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHH
Confidence 123444443332222 2234577899999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhh
Q 008342 252 SYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS 331 (569)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~ 331 (569)
...+..++.|+++++.+.+++..+++.++++++|++.++|+++..|.+........ ++++|.+++||+++++++.+++.
T Consensus 227 ~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~~~~~~~~ 305 (517)
T 3r44_A 227 TTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELD-APDFRYFITGGAPMPEALIKIYA 305 (517)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCC-CTTCCEEEECSSCCCHHHHHHHH
T ss_pred HHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCC-CCcccEEEECCCCCCHHHHHHHH
Confidence 88777777888888888899999999999999999999999999998765433333 78999999999999999999999
Q ss_pred hcCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCc
Q 008342 332 QKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC 411 (569)
Q Consensus 332 ~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 411 (569)
+.++++++.||+||+++.++.+... ......+++|.|.+++ +++++|++ +.+++.+ .|||+++|++
T Consensus 306 ~~~~~~~~~YG~TE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g---~GEl~v~g~~ 371 (517)
T 3r44_A 306 AKNIEVVQGYALTESCGGGTLLLSE---------DALRKAGSAGRATMFT-DVAVRGDD-GVIREHG---EGEVVIKSDI 371 (517)
T ss_dssp HTTCEEEEEEECGGGTTCEEEECGG---------GTTTTTTCCBEECTTE-EEEEECTT-SCEESSE---EEEEEEEETT
T ss_pred hcCCcEEEeecccccccceeecCCc---------cccccCCCCCcCCCCe-EEEEECCC-CCCCCCC---CeEEEEeCcc
Confidence 7799999999999998876654321 1123347899999999 69999976 8888765 6999999999
Q ss_pred ccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCC
Q 008342 412 VMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 491 (569)
Q Consensus 412 ~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 491 (569)
++.||+++++.+.+.|.+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..
T Consensus 372 v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~ 451 (517)
T 3r44_A 372 LLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKW 451 (517)
T ss_dssp SCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTT
T ss_pred hhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 492 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 492 g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
|+.+.+++ +.++... ..++|+++|+++|+.|++|..+++++ ||+|++||++|++|++++.+..
T Consensus 452 g~~~~a~v-~~~~~~~-----~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 452 GEIAAAIV-VADQNEV-----SEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp EEEEEEEE-EECTTTC-----CHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred CceEEEEE-ECCCCCC-----CHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 88888888 4444333 45789999999999999999999877 9999999999999999997654
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-80 Score=652.42 Aligned_cols=513 Identities=32% Similarity=0.502 Sum_probs=397.3
Q ss_pred ccccCHHHHHHHhhhhCCCceeeee----CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhh
Q 008342 17 YTALTPLWFINRAATLHPTRKSVVY----GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPM 92 (569)
Q Consensus 17 ~~~~~l~~~l~~~a~~~p~~~a~~~----~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 92 (569)
..++|+.++|+++++++|+++|+++ .++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||++
T Consensus 15 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 94 (541)
T 1v25_A 15 DEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPG 94 (541)
T ss_dssp CCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence 3467999999999999999999994 458999999999999999999999999999999999999999999999999
Q ss_pred cCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcch
Q 008342 93 AGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGA 172 (569)
Q Consensus 93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (569)
+|++++|+++.++.+++.+++++++++++|++.+....+......++ ....++.+++... .+.
T Consensus 95 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~ 157 (541)
T 1v25_A 95 MGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK-------TVQHFVVMDEKAP----------EGY 157 (541)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCS-------SCCEEEESSSCCC----------TTC
T ss_pred cCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCC-------CccEEEEecCCCC----------ccc
Confidence 99999999999999999999999999999999887665544332222 2344555544321 122
Q ss_pred hhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHh--HhHhCCCCCcEEEEcCCccchhh
Q 008342 173 IEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNG--ALIWGMNEGAVFLWTLPMFHGNG 250 (569)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~g 250 (569)
..|++++...... ....++++++|+|||||||.||+|.+||+++....... ...++++++|++++.+|++|.++
T Consensus 158 ~~~~~~~~~~~~~----~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 233 (541)
T 1v25_A 158 LAYEEALGEEADP----VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNA 233 (541)
T ss_dssp EEHHHHCCSCCCC----CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHH
T ss_pred ccHHHHhhccCCc----ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhH
Confidence 3455655433221 23456899999999999999999999999998776552 34567889999999999999999
Q ss_pred HHHHHHHHHhcceEEEecc-CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHH
Q 008342 251 WSYTWSLAALCGTSICLRQ-VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFA 329 (569)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~ 329 (569)
+...+.+++.|+++++.+. +++..+++.|+++++|++.++|+++..|.+........ ++++|.+++||+++++++.++
T Consensus 234 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~~~ 312 (541)
T 1v25_A 234 WCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR-LKTLRRLVVGGSAAPRSLIAR 312 (541)
T ss_dssp HTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCC-CSSCCEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCc-chhccEEEECCCCCCHHHHHH
Confidence 9777777788888887753 69999999999999999999999999998764332233 789999999999999999999
Q ss_pred hhhcCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEec
Q 008342 330 MSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 409 (569)
Q Consensus 330 ~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~ 409 (569)
+..+|+++++.||+||++++++.+.....+.............++|.|++++ +++|+|++ +++++.++++.|||+++|
T Consensus 313 ~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~-g~~~~~~~~~~GEl~v~g 390 (541)
T 1v25_A 313 FERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADEE-GRPVPKDGKALGEVQLKG 390 (541)
T ss_dssp HHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECTT-SCBCCSSSCCCEEEEEES
T ss_pred HHHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCc-EEEEECCC-CCCCCCCCCcceEEEEeC
Confidence 9667999999999999987766554332222222222223457899999999 69999976 888886444689999999
Q ss_pred CcccccccCCcchhhhhhc-CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecC
Q 008342 410 SCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488 (569)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 488 (569)
++++.|||++++.+.+.|. +|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||.|.+++|++.++
T Consensus 391 ~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~ 470 (541)
T 1v25_A 391 PWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPH 470 (541)
T ss_dssp TTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEEC
T ss_pred cchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecC
Confidence 9999999999999999996 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHh-cCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
+..++.+++++++. +... ..+++.+++++ +|+.|++|..+++++ ||+|++||++|++|++.+.+.
T Consensus 471 ~~~~~~~~a~vv~~-~~~~-----~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 471 PKWQERPLAVVVPR-GEKP-----TPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp SSSSEEEEECC-------------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred CCcCceEEEEEEEC-CCCC-----CHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence 98899999998876 2222 45778999999 899999999998877 999999999999999987543
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-78 Score=641.11 Aligned_cols=505 Identities=20% Similarity=0.282 Sum_probs=411.3
Q ss_pred cccCHH-HHHHHhhhhCCCceeeeeC-----CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhh
Q 008342 18 TALTPL-WFINRAATLHPTRKSVVYG-----SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAP 91 (569)
Q Consensus 18 ~~~~l~-~~l~~~a~~~p~~~a~~~~-----~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 91 (569)
...++. ++|+++|+++|+++|+++. ++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~ 132 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLH 132 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 455666 9999999999999999972 3789999999999999999999999999999999999999999999999
Q ss_pred hcCceEeeccccCCHHHHHHHHhcCCceEEEEcccch--HHHHHHHHHHhhhcCCCCCc-CeEEEecCCCcchhhhHHhh
Q 008342 92 MAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF--SLAEEALKMMEANSEGKLKT-PHLIVIGDESCDSKQLEYAL 168 (569)
Q Consensus 92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~ 168 (569)
++|++++|+++.++.+++.+++++++++++|++.+.. ..+......++ .. ..++.++...
T Consensus 133 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------- 195 (580)
T 3etc_A 133 KLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECG-------DIPLKKAKVGGDV---------- 195 (580)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHC-------SCCCEEEEESSSC----------
T ss_pred hCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCC-------CcceEEEEeCCcc----------
Confidence 9999999999999999999999999999999988764 55555555444 22 4455554331
Q ss_pred hcchhhHHhhhhcCCCCCCCC---CCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCc
Q 008342 169 ARGAIEYEKFLETGDPEFAWK---PPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPM 245 (569)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~ 245 (569)
..++..+.+.+.......... ....++++++|+|||||||.||+|.++|.+++.........+++.+++++++..|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (580)
T 3etc_A 196 LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADS 275 (580)
T ss_dssp CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCT
T ss_pred ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCCh
Confidence 123456666665544433221 23578899999999999999999999999988877766666788999999999999
Q ss_pred cchhhHHHHHH-HHHhcceEEEe--ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCC
Q 008342 246 FHGNGWSYTWS-LAALCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPP 322 (569)
Q Consensus 246 ~~~~g~~~~~~-~~~~g~~~~~~--~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l 322 (569)
+|..+.+..+. .+..|+++++. ..+++..+++.|+++++|+++++|++++.|.+... .... +++||.+++||+++
T Consensus 276 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~-l~~lr~i~~gGe~l 353 (580)
T 3etc_A 276 GWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL-SHYN-FSTLKYAVVAGEPL 353 (580)
T ss_dssp TSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC----C-CTTCCEEEECSSCC
T ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc-ccCC-CccceEEEEccCCC
Confidence 99888775444 44555555555 46899999999999999999999999999988632 2233 78999999999999
Q ss_pred CHHHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCc
Q 008342 323 PPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKT 401 (569)
Q Consensus 323 ~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~ 401 (569)
++++.+++.+ +|+++++.||+||++..++.+... ....+++|.|++++ +++|+|++ +++++.| +
T Consensus 354 ~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~p~~~~-~v~ivd~~-g~~~~~g--~ 418 (580)
T 3etc_A 354 NPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM-----------EPKPGSIGKPTPGY-KIELMDRD-GRLCEVG--E 418 (580)
T ss_dssp CHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS-----------CCCTTCCBEECTTC-EEEEECTT-SCBCCTT--C
T ss_pred CHHHHHHHHHHhCCeEecccccccccceeecCCCC-----------CCCCCccccCCCCC-EEEEECCC-CCCCCCC--C
Confidence 9999999985 499999999999998665543211 12347899999999 69999987 9999988 7
Q ss_pred eEEEEEec-----CcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCC
Q 008342 402 IGEIVMRG-----SCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 476 (569)
Q Consensus 402 ~Gel~v~~-----~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 476 (569)
.|||+++| +.++.||+++++.+.+.|.+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||
T Consensus 419 ~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p 498 (580)
T 3etc_A 419 EGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHP 498 (580)
T ss_dssp CEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTST
T ss_pred ceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence 89999997 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHH
Q 008342 477 LVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK 555 (569)
Q Consensus 477 ~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (569)
.|.+|+|++.+++..|+.+.++|++.++.... +...++|++++++.|+.|++|..+.+++ ||+|++||++|++|+++
T Consensus 499 ~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~ 576 (580)
T 3etc_A 499 AVLECAITGVPDPVRGQVIKATIVLTKDYTPS--DSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDK 576 (580)
T ss_dssp TEEEEEEEEEEETTTEEEEEEEEEECTTCCCC--HHHHHHHHHHHHHHSCGGGCCSEEEEECC-----------------
T ss_pred CeeeEEEEeeeccCCCcEEEEEEEECCCCCCC--HHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhH
Confidence 99999999999999999999999988775321 2266899999999999999999999877 99999999999999998
Q ss_pred HHh
Q 008342 556 AKE 558 (569)
Q Consensus 556 ~~~ 558 (569)
+.+
T Consensus 577 ~~~ 579 (580)
T 3etc_A 577 DQS 579 (580)
T ss_dssp ---
T ss_pred hhc
Confidence 765
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-79 Score=640.67 Aligned_cols=500 Identities=22% Similarity=0.334 Sum_probs=424.0
Q ss_pred ccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 17 YTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 17 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
+.+.|+.++|+++++++|+++|+++.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++
T Consensus 22 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred ccCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcc
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARG 171 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (569)
++|+++.++.+++.+++++++++++|++++.. .........++ ....++..++..
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP-------TLKNIIVAGEAE------------- 161 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCT-------TCCCEEEESCCT-------------
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCC-------CccEEEEcCCcc-------------
Confidence 99999999999999999999999999987642 12222222222 233444433321
Q ss_pred hhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhH
Q 008342 172 AIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 251 (569)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 251 (569)
.+.++...... ........++++++++|||||||.||+|.++|+++..........+++.++|++++.+|++|.+++
T Consensus 162 --~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 162 --EFLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp --TSEEGGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred --chhhhhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 12222221111 111123567899999999999999999999999999998888888899999999999999999998
Q ss_pred HH--HHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHH
Q 008342 252 SY--TWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFA 329 (569)
Q Consensus 252 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~ 329 (569)
.. .+.+++.|+++++.+.+++..+++.|+++++|++.++|+++..+++........ ++++|.+++||+++++++.++
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gG~~l~~~~~~~ 317 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD-LSSLQVLQVGGAKFSAEAARR 317 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC-CTTCCEEEEESSCCCHHHHTT
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCC-ccceeEEEEcCCCCCHHHHHH
Confidence 64 666777888888888899999999999999999999999999998764433333 899999999999999999999
Q ss_pred hhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEe
Q 008342 330 MSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMR 408 (569)
Q Consensus 330 ~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~ 408 (569)
+.+ +++++++.||+||++..+.. . . ........++|.|+++..+++|+|++ +++++.| +.|||+++
T Consensus 318 ~~~~~~~~~~~~YG~TE~~~~~~~-~-~--------~~~~~~~~~~G~p~~~~~~~~i~d~~-~~~~~~g--~~GEl~v~ 384 (539)
T 1mdb_A 318 VKAVFGCTLQQVFGMAEGLVNYTR-L-D--------DPEEIIVNTQGKPMSPYDESRVWDDH-DRDVKPG--ETGHLLTR 384 (539)
T ss_dssp HHHHTCSEEEEEEECTTSCEEECC-T-T--------SCHHHHHHCCCEESSTTCEEEEECTT-SCBCCTT--CCEEEEEE
T ss_pred HHHHhCCcEEEEEcCCCCcccccC-C-C--------CcHHhcCCCCCcccCCCceEEEECCC-CCCCcCC--CcceEEee
Confidence 984 59999999999996422211 1 0 01123347899999765469999976 8999988 78999999
Q ss_pred cCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeec
Q 008342 409 GSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487 (569)
Q Consensus 409 ~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 487 (569)
|++++.|||++++.+...| .+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||.|.+++|++.+
T Consensus 385 g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 464 (539)
T 1mdb_A 385 GPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMP 464 (539)
T ss_dssp CTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred CcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEecc
Confidence 9999999999999999999 589999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhc-CCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 488 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 488 ~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
++..|+.+++++++... .. ..++|+++++++ |+.|++|..+.+++ ||+|++||++|++|++++.+.
T Consensus 465 ~~~~g~~~~a~vv~~~~-~~-----~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 532 (539)
T 1mdb_A 465 DQFLGERSCVFIIPRDE-AP-----KAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532 (539)
T ss_dssp ETTTEEEEEEEEEESSS-CC-----CHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHH
T ss_pred ccccCceEEEEEEECCC-CC-----CHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHH
Confidence 98889999999987742 22 457899999998 99999999999877 999999999999999998764
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-80 Score=651.49 Aligned_cols=523 Identities=21% Similarity=0.281 Sum_probs=345.9
Q ss_pred cccCCccccccccccccCHHHHHHHhhhhCCCceeee---e--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Q 008342 4 VKDIDDLPKISANYTALTPLWFINRAATLHPTRKSVV---Y--GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAP 78 (569)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~---~--~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~ 78 (569)
...+-.-+.+....++.|+.++|.++++++|+++|++ + .++++||+||.++++++|++|.++|+++||+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 83 (550)
T 3rix_A 4 AKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83 (550)
T ss_dssp GGGSEECCCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECS
T ss_pred ccceeeCCCCCCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcC
Confidence 3444455566777888999999999999999999976 3 3589999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCC
Q 008342 79 NVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDES 158 (569)
Q Consensus 79 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 158 (569)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.......+ ....++.++...
T Consensus 84 n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 156 (550)
T 3rix_A 84 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLP-------IIQKIIIMDSKT 156 (550)
T ss_dssp SCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCT-------TCCEEEETTCSS
T ss_pred CcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCC-------CcceEEEEcCCc
Confidence 9999999999999999999999999999999999999999999999988777776665554 345566655432
Q ss_pred cchhhhHHhhhcchhhHHhhhhcCCCC------CCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH--
Q 008342 159 CDSKQLEYALARGAIEYEKFLETGDPE------FAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI-- 230 (569)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~-- 230 (569)
.. .+...+.+++...... ........++++++|+|||||||.||+|.++|+++..........
T Consensus 157 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~ 227 (550)
T 3rix_A 157 DY---------QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF 227 (550)
T ss_dssp CB---------TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT
T ss_pred cc---------cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhc
Confidence 11 1223444544332221 111122345789999999999999999999999998887666554
Q ss_pred -hCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCc
Q 008342 231 -WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPL 309 (569)
Q Consensus 231 -~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l 309 (569)
+++.++|++++.+|++|.+|+...+..++.|+++++...+++..+++.|+++++|++.++|+++..+++........ +
T Consensus 228 ~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l 306 (550)
T 3rix_A 228 GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYD-L 306 (550)
T ss_dssp SCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSC-C
T ss_pred cccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccC-c
Confidence 46789999999999999999988888888899998888899999999999999999999999999999876555444 8
Q ss_pred ccceeeeecCCCCCHHHHHHhhh-cCCe-EecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceee
Q 008342 310 TNVVNVNTAGAPPPPSLLFAMSQ-KGFR-ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVI 387 (569)
Q Consensus 310 ~~l~~~~~~g~~l~~~~~~~~~~-~~~~-i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~ 387 (569)
+++|.+++||+++++++.+++.+ ++.. +++.||+||+++.++.+... ....+++|.|++++ +++|+
T Consensus 307 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~~~i~ 374 (550)
T 3rix_A 307 SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG-----------DDKPGAVGKVVPFF-EAKVV 374 (550)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTEEEEECTTC-EEEEE
T ss_pred ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC-----------CCCCCCcccccCCc-EEEEE
Confidence 99999999999999999999985 4664 99999999999766654321 12347899999999 69999
Q ss_pred eCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechH
Q 008342 388 DARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSV 466 (569)
Q Consensus 388 d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~ 466 (569)
|++++++++.| +.|||+++|++++.||+++++.+...| .+|||+|||+|++++||+++++||.||+||++|++|+|.
T Consensus 375 d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~ 452 (550)
T 3rix_A 375 DLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPA 452 (550)
T ss_dssp CTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----------------
T ss_pred eCCCCcCCCCC--CCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHH
Confidence 98889999988 789999999999999999999999999 689999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCC-ceEEecc-CCCCCC
Q 008342 467 EVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP-KSVVFAA-LPKSAT 544 (569)
Q Consensus 467 ~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p-~~i~~~~-lP~t~~ 544 (569)
+||++|.+||.|.+++|++.+++..|+.+.++|++.++... ..+++.++++++++.++.| ..+++++ ||+|++
T Consensus 453 eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~-----~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~ 527 (550)
T 3rix_A 453 ELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM-----TEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLT 527 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCC-----CHHHHHHHHHHhcccccccCCceEEEeecCCCCC
Confidence 99999999999999999999999989999999988776543 5678999999999988655 4577666 999999
Q ss_pred CcccHHHHHHHHHhcCCc
Q 008342 545 GKIQKHLLRAKAKEMGPV 562 (569)
Q Consensus 545 GKi~r~~l~~~~~~~~~~ 562 (569)
||++|++|++++.+....
T Consensus 528 GKi~r~~L~~~~~~~~~~ 545 (550)
T 3rix_A 528 GKLDARKIREILIKAKKG 545 (550)
T ss_dssp ------------------
T ss_pred cceeHHHHHHHHHhhccc
Confidence 999999999999775543
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-78 Score=632.58 Aligned_cols=491 Identities=22% Similarity=0.302 Sum_probs=421.3
Q ss_pred HHHHHhhhhCCCceeee---eCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeec
Q 008342 24 WFINRAATLHPTRKSVV---YGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSI 100 (569)
Q Consensus 24 ~~l~~~a~~~p~~~a~~---~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 100 (569)
++|+++++++|+++|+. +.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 57899999999999988 456899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhh
Q 008342 101 NIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLE 180 (569)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 180 (569)
++.++.+++.+++++++++++|++.+....+........ ..+..++..... .+.....
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-------------~~~~~~~ 141 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG---------ATVETLGPDGRG-------------SLTDAAA 141 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT---------CEEEECCTTSCS-------------HHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC---------ceEEEecCCccc-------------ccchhhh
Confidence 999999999999999999999999887665554443332 234444332110 1111111
Q ss_pred cCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHH-HHHHHH
Q 008342 181 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAA 259 (569)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~ 259 (569)
... .........++++++|+|||||||.||+|.++|+++..........+++.++|++++.+|++|.+|+.. .+..++
T Consensus 142 ~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 220 (503)
T 4fuq_A 142 GAS-EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLF 220 (503)
T ss_dssp TSC-SCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHH
T ss_pred cCC-CCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHH
Confidence 111 111223456789999999999999999999999999999998888999999999999999999999754 445666
Q ss_pred hcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc-CCeEe
Q 008342 260 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRIT 338 (569)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~-~~~i~ 338 (569)
.|+++++.+.+++..+++.++ ++|++.++|+++..+++........ ++++|.+++||+++++++.+++.+. +++++
T Consensus 221 ~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 297 (503)
T 4fuq_A 221 ARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKET-TGHMRLFISGSAPLLADTHREWSAKTGHAVL 297 (503)
T ss_dssp TTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTT-TTTCCEEEECSSCCCHHHHHHHHHHHSCCEE
T ss_pred hCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccc-hhhcEEEEECCCCCCHHHHHHHHHHhCCCcc
Confidence 788888888899999999998 8999999999999999887655554 8899999999999999999999855 99999
Q ss_pred cccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccC
Q 008342 339 HTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 418 (569)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~ 418 (569)
+.||+||++..+.... ......+++|.|++++ +++|+|++++++++.| +.|||+++|++++.||++
T Consensus 298 ~~YG~TE~~~~~~~~~-----------~~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~ 363 (503)
T 4fuq_A 298 ERYGMTETNMNTSNPY-----------DGDRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWR 363 (503)
T ss_dssp ECCEETTTEECBCCCS-----------SSCCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTT
T ss_pred ceEcccccCcccccCC-----------CCCCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhhcC
Confidence 9999999986543221 1112336899999999 6999998889999998 799999999999999999
Q ss_pred Ccchhhhhhc-CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeE
Q 008342 419 NPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497 (569)
Q Consensus 419 ~~~~~~~~~~-~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~ 497 (569)
+++.+...|. +|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..|+.+.+
T Consensus 364 ~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a 443 (503)
T 4fuq_A 364 MPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTA 443 (503)
T ss_dssp CHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred ChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEE
Confidence 9999999995 899999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 498 ~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
+++..++... ..+++.++++++|+.|++|..+.+++ ||+|++||++|++|++++.+.
T Consensus 444 ~v~~~~~~~~-----~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 444 VVVRDKGATI-----DEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EEEECTTCCC-----CHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 9998876544 55789999999999999999999877 999999999999999988654
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-78 Score=636.35 Aligned_cols=504 Identities=20% Similarity=0.283 Sum_probs=428.8
Q ss_pred ccCHHH-HHHHhhhhCCCceeeee--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 19 ALTPLW-FINRAATLHPTRKSVVY--GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 19 ~~~l~~-~l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
.+|+.+ ++.++++++ +++|+++ .++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 24 ~~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Ga 102 (548)
T 2d1s_A 24 SAGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGV 102 (548)
T ss_dssp CHHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTC
T ss_pred cCcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCC
Confidence 358999 898899999 9999998 468999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhH
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEY 175 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (569)
+++|+++.++.+++.+++++++++++|++.+....+......++ ....++.+++.... .+...|
T Consensus 103 v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---------~~~~~~ 166 (548)
T 2d1s_A 103 GVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVT-------TIKTIVILDSKVDY---------RGYQCL 166 (548)
T ss_dssp EEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHST-------TCCEEEETTCSSCB---------TTBCBH
T ss_pred EEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCC-------CCCEEEEeCCcccc---------cccccH
Confidence 99999999999999999999999999999987666555443332 23445555432110 112345
Q ss_pred HhhhhcCCCC-CCCCCCC-----CcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH---hCCCCCcEEEEcCCcc
Q 008342 176 EKFLETGDPE-FAWKPPE-----DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMF 246 (569)
Q Consensus 176 ~~~l~~~~~~-~~~~~~~-----~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~---~~~~~~d~~~~~~p~~ 246 (569)
++++...... .+..... .++++++|+|||||||.||+|.+||+++.......... +++.++|++++.+|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 246 (548)
T 2d1s_A 167 DTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFH 246 (548)
T ss_dssp HHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHH
Confidence 5555443211 1110001 23899999999999999999999999998888776665 6788999999999999
Q ss_pred chhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHH
Q 008342 247 HGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSL 326 (569)
Q Consensus 247 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~ 326 (569)
|.+|+...+...+.|+++++.+.+++..+++.|+++++|++.++|+++..|.+........ ++++|.+++||+++++++
T Consensus 247 h~~g~~~~~~~~l~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~ 325 (548)
T 2d1s_A 247 HGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYD-LSNLVEIASGGAPLSKEV 325 (548)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSC-CTTCCEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccccc-ccceeEEEEcCccCCHHH
Confidence 9999877555555888888888899999999999999999999999999999875443334 889999999999999999
Q ss_pred HHHhhh-c-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEE
Q 008342 327 LFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGE 404 (569)
Q Consensus 327 ~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 404 (569)
.+++.+ + ++++++.||+||+++.++.+... ....+++|.|++++ +++|+|++++++++.| +.||
T Consensus 326 ~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GE 391 (548)
T 2d1s_A 326 GEAVARRFNLPGVRQGYGLTETTSAIIITPEG-----------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGE 391 (548)
T ss_dssp HHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEE
T ss_pred HHHHHHHcCCCceeeccccccccceeeecCcc-----------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeE
Confidence 999985 4 78999999999998766543211 12347899999999 6999997779999988 7899
Q ss_pred EEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEE
Q 008342 405 IVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483 (569)
Q Consensus 405 l~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 483 (569)
|+++|++++.|||++++.+.+.| .+|||+|||+|++++||++++.||.||+|+++|++|+|.+||++|.+||.|.+++|
T Consensus 392 l~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V 471 (548)
T 2d1s_A 392 VCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGV 471 (548)
T ss_dssp EEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEE
T ss_pred EEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEE
Confidence 99999999999999999999999 58999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCc-eEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 484 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK-SVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
++.+++..|+.++++|++.++... ..++|+++|+++|+.|++|. .+.+++ ||+|++||++|++|++++.+.
T Consensus 472 ~~~~~~~~g~~~~a~vv~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 544 (548)
T 2d1s_A 472 AGVPDPVAGELPGAVVVLESGKNM-----TEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKP 544 (548)
T ss_dssp EEEEETTTEEEEEEEEEECTTCCC-----CHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSC
T ss_pred EEEEcCCCCeeeEEEEEEcCCCCC-----CHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhh
Confidence 999998889999999998766433 45789999999999999999 888777 999999999999999998754
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-79 Score=643.01 Aligned_cols=499 Identities=26% Similarity=0.423 Sum_probs=337.4
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
.+.++|+.++|+++++++|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 2 s~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 81 (509)
T 3ivr_A 2 SLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA 81 (509)
T ss_dssp CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhH
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEY 175 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (569)
+++|+++.++.+++.+++++++++++|++.+....+......+. ....++.+++.. ..+
T Consensus 82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------------~~~ 140 (509)
T 3ivr_A 82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG-------GVKKAYAIGDGS--------------GPF 140 (509)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCS-------SCCEEEESSCCC--------------SSC
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccC-------CceEEEEcCCCC--------------cCh
Confidence 99999999999999999999999999999987665444332222 344555554421 122
Q ss_pred HhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHH
Q 008342 176 EKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 255 (569)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (569)
.++...............++++++|+|||||||.||+|.++|+++..........+++.++|++++.+|++|.+|+...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHH
Confidence 22222112222222345788999999999999999999999999999999888899999999999999999999999888
Q ss_pred HHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-c-
Q 008342 256 SLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K- 333 (569)
Q Consensus 256 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~- 333 (569)
..++.+|+.++...+++..+++.|+++++|++.++|+++..+++... ... ++++|.++.+|++ +..+++.+ +
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~-l~~lr~~~~~g~~---~~~~~~~~~~~ 294 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--PAQ-LASLRAVTGLDTP---ETIERFEATCP 294 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC--GGG-GTTCCEEEEECCH---HHHHHHHHHCT
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc--ccc-hhhhheecccCCh---HHHHHHHHhcC
Confidence 88888888888888999999999999999999999999999998762 222 7899999999987 67777764 4
Q ss_pred CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccc
Q 008342 334 GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVM 413 (569)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 413 (569)
++++++.||+||++++++.+.... ....+|.|++++ +++|+|++ +++++.| +.|||+++|++++
T Consensus 295 ~~~~~~~YG~TE~~~~~~~~~~~~------------~~~~~G~p~~~~-~~~i~d~~-~~~~~~g--~~GEl~v~g~~~~ 358 (509)
T 3ivr_A 295 NATFWATFGQSETSGLSTFAPYRD------------RPKSAGRPLFWR-TVAVVDAE-DRPLPPG--EVGEIVLRGPTVF 358 (509)
T ss_dssp TCEEEEEEEEGGGTEEEEEEEGGG------------STTSCCEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSC
T ss_pred CCeEEcccCccccccccccCcccc------------CCCcccccCCCc-EEEEECCC-CCCCCCC--CceEEEEecCCcc
Confidence 899999999999987766543211 124589999999 69999987 8999988 7899999999999
Q ss_pred ccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEeccc--CceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCC
Q 008342 414 KGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRL--KDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 491 (569)
Q Consensus 414 ~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 491 (569)
.||+++++.+...|.+|||+|||+|++++||++++.||. ||+||++|++|+|.+||++|.+||.|.+++|++.+++..
T Consensus 359 ~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~ 438 (509)
T 3ivr_A 359 KGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQW 438 (509)
T ss_dssp CEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-----------------------------------------
T ss_pred ccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEecccccc
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999999988
Q ss_pred CceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCCc
Q 008342 492 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPV 562 (569)
Q Consensus 492 g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~ 562 (569)
++.+++++++.++... ..++|+++++++|+.|++|..+.+++ ||+|++||++|++|++++.+....
T Consensus 439 ~~~~~a~v~~~~~~~~-----~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~ 505 (509)
T 3ivr_A 439 SEAIKAVCVCKPGESI-----AADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHH 505 (509)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CcEEEEEEEeCCCCCC-----CHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhcccc
Confidence 9999999988776443 56789999999999999999998777 999999999999999998876543
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-79 Score=643.09 Aligned_cols=504 Identities=21% Similarity=0.330 Sum_probs=338.4
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
.|.++|+.++|+++++++|+++|+++.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Ga 105 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGV 105 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhc
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALAR 170 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (569)
+++|+++.++.+++.+++++++++++|++.... ........... ....++.++.....
T Consensus 106 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---------- 168 (544)
T 3o83_A 106 VVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL-------SPEIILMLNHQATD---------- 168 (544)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTC-------CCSEEEEETCCTTS----------
T ss_pred EEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhccc-------CcceEEEecCCccc----------
Confidence 999999999999999999999999999987653 22222222211 33445555433111
Q ss_pred chhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhh
Q 008342 171 GAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 250 (569)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 250 (569)
..+.++...............++++++|+|||||||.||+|.++|+++..........+++.++|++++.+|++|.++
T Consensus 169 --~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 246 (544)
T 3o83_A 169 --FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM 246 (544)
T ss_dssp --EEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred --cchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEee
Confidence 123333333222222223456789999999999999999999999999999999888999999999999999999998
Q ss_pred HHH--HHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHH
Q 008342 251 WSY--TWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLF 328 (569)
Q Consensus 251 ~~~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~ 328 (569)
+.. .+.++..|+++++.+.+++..+++.|+++++|++.++|+++..+++........ ++++|.+++||+++++++.+
T Consensus 247 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~ 325 (544)
T 3o83_A 247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQ-IQSLKLLQVGGASFPESLAR 325 (544)
T ss_dssp HHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHH-HTTCCEEEEESSCCCHHHHT
T ss_pred cchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcccc-CCcceEEEEcCCCCCHHHHH
Confidence 864 566677788888888899999999999999999999999999998876554444 88999999999999999999
Q ss_pred Hhhhc-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCcee-eccCCceeeeCCCCcccCCCCCceEEEE
Q 008342 329 AMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT-ICLDGLDVIDARTNQPVPADGKTIGEIV 406 (569)
Q Consensus 329 ~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~i~d~~~~~~~~~~~~~~Gel~ 406 (569)
++.+. ++++++.||+||++..++.+. ........++|.|+ ++. +++|+|++ +++++.| +.|||+
T Consensus 326 ~~~~~~~~~~~~~YG~TE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~~~g--~~GEl~ 391 (544)
T 3o83_A 326 QVPEVLNCKLQQVFGMAEGLVNYTRLD----------DSDEQIFTTQGRPISSDD-EIKIVDEQ-YREVPEG--EIGMLA 391 (544)
T ss_dssp HHHHHHCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEEEE
T ss_pred HHHHHhCCcEEeeeccccccceeecCC----------CchhhccCCCceecCCCc-EEEEECCC-CCCCCCC--CeeEEE
Confidence 99855 999999999999874333221 11223447899996 677 69999965 9999988 899999
Q ss_pred EecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEe
Q 008342 407 MRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVA 485 (569)
Q Consensus 407 v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 485 (569)
++|++++.||+++++.+...| .+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||.|.+++|++
T Consensus 392 v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~ 471 (544)
T 3o83_A 392 TRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVA 471 (544)
T ss_dssp EECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC--------------------------------
T ss_pred EecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEe
Confidence 999999999999999999999 6899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHh-cCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 486 RPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 486 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
.+++..|+.++++++..+.. . ...++++++++ .|+.|++|..+.+++ ||+|++||++|++|++++.+.
T Consensus 472 ~~~~~~g~~~~a~vv~~~~~-~-----~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 472 IVDEQFGEKSCAFIVSRNPE-L-----KAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccCCCCCceEEEEEEeCCCC-C-----CHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 99999899999999876532 1 45678888988 799999999999877 999999999999999988754
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-77 Score=624.17 Aligned_cols=483 Identities=25% Similarity=0.359 Sum_probs=408.3
Q ss_pred cCHHHHHHHhhhhCCCceeeeeC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 20 LTPLWFINRAATLHPTRKSVVYG--SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
+|+.++|+++++++|+++|+.+. ++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 57999999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEE--cccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhH
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIV--DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEY 175 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (569)
+|+++.++.+++.+++++++++++|+ +.+....+. .... ...++. +
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~--------~~~~~~---------------------~ 129 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIF---QSGS--------GARIIF---------------------L 129 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHH---HHCC--------CCEEEE---------------------G
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhh---hccc--------cceeEE---------------------e
Confidence 99999999999999999999999999 655433220 1111 111221 2
Q ss_pred HhhhhcCC----CCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCC--CCCcEEEEcCCccchh
Q 008342 176 EKFLETGD----PEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGM--NEGAVFLWTLPMFHGN 249 (569)
Q Consensus 176 ~~~l~~~~----~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~ 249 (569)
++++.... ..........++++++|+|||||||.||+|.++|+++..........+++ .++|++++.+|++|.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 209 (504)
T 1t5h_X 130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209 (504)
T ss_dssp GGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHH
T ss_pred cchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcc
Confidence 22222110 00111123467899999999999999999999999999888887777888 8899999999999999
Q ss_pred hHH-HHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCcccceeeeecCCCCCHHH
Q 008342 250 GWS-YTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSL 326 (569)
Q Consensus 250 g~~-~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~~~~~g~~l~~~~ 326 (569)
|+. ..+.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+.... .... ++++|.+++||+++++++
T Consensus 210 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~~~~gG~~l~~~~ 288 (504)
T 1t5h_X 210 GFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK-LDSLRHVTFAGATMPDAV 288 (504)
T ss_dssp HHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCC-CTTCCEEEECCTTCCHHH
T ss_pred hHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccccccc-CccccEEEEcCCcCCHHH
Confidence 984 455666778888888889999999999999999999999999999876522 2223 789999999999999999
Q ss_pred HHHhhhc-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCC--cccCCCCCceE
Q 008342 327 LFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTN--QPVPADGKTIG 403 (569)
Q Consensus 327 ~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~--~~~~~~~~~~G 403 (569)
.+++.+. ++++++.||+||++. +.... ....++.|.|.+++ +++++|++++ ++++.| +.|
T Consensus 289 ~~~~~~~~~~~~~~~YG~TE~~~--~~~~~------------~~~~~~~g~p~~~~-~~~i~~~~~~~~~~~~~g--~~G 351 (504)
T 1t5h_X 289 LETVHQHLPGEKVNIYGTTEAMN--SLYMR------------QPKTGTEMAPGFFS-EVRIVRIGGGVDEIVANG--EEG 351 (504)
T ss_dssp HHHHHHHCCSEEEEEEEETTTEE--EEEEE------------SCSSSSEEBCCTTC-CEEEECTTSCTTCBCCTT--CCE
T ss_pred HHHHHHhcCcceeeeeccccccc--ccccc------------CCCCCccccCCCCC-ceeEEeccCCCCCcCCCC--Ccc
Confidence 9999854 899999999999932 22111 11236789999999 6999997632 788877 789
Q ss_pred EEEEe-cCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeE
Q 008342 404 EIVMR-GSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 482 (569)
Q Consensus 404 el~v~-~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 482 (569)
||+++ |+.++.||+++++.+.+.|.+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||.|.+|+
T Consensus 352 El~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 431 (504)
T 1t5h_X 352 ELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVV 431 (504)
T ss_dssp EEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEE
T ss_pred eEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEE
Confidence 99999 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHh-cCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHH
Q 008342 483 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK 557 (569)
Q Consensus 483 v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~ 557 (569)
|++.+++..|+.++++|++.++... ..++|.++|++ +|+.|++|+.+++++ ||+|++||++|++|++++.
T Consensus 432 Vv~~~~~~~g~~~~a~vv~~~~~~~-----~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 432 VIGLADQRWGQSVTACVVPRLGETL-----SADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EEEEECSSSSEEEEEEEEECTTCCC-----CHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred EEEeecCCCCcEEEEEEEecCCcCc-----CHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 9999999889999999998876433 45789999998 999999999999877 9999999999999998763
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-77 Score=627.60 Aligned_cols=504 Identities=21% Similarity=0.321 Sum_probs=421.9
Q ss_pred CHHHHHHHhhhh-----CCCceeeeeC-----CeeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCchhHHHHHHH
Q 008342 21 TPLWFINRAATL-----HPTRKSVVYG-----SKHYTWHQTYRRCRRFASALSKL-SIGLGTTVSVIAPNVPAMYEAQFG 89 (569)
Q Consensus 21 ~l~~~l~~~a~~-----~p~~~a~~~~-----~~~~Ty~el~~~~~~la~~L~~~-g~~~g~~V~i~~~~~~~~~~~~lA 89 (569)
++.++|+++++. +|+++|+++. ++++||+||.++++++|++|.+. |+++||+|+++++|++++++++||
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA 118 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG 118 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 357899999998 9999999973 37899999999999999999998 999999999999999999999999
Q ss_pred hhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhh
Q 008342 90 APMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALA 169 (569)
Q Consensus 90 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (569)
|+++|++++|+++.++.+++.+++++++++++|++.+....+......++ ....++.+++...
T Consensus 119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------- 181 (570)
T 3c5e_A 119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP-------SLRIKLLVSEKSC---------- 181 (570)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCT-------TCCEEEEESSSCC----------
T ss_pred HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCC-------ceeEEEEecccCc----------
Confidence 99999999999999999999999999999999999887665554333222 2345555554211
Q ss_pred cchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHH--HHHHhHhHhCCCCCcEEEEcCCccc
Q 008342 170 RGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYL--MSLNGALIWGMNEGAVFLWTLPMFH 247 (569)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~--~~~~~~~~~~~~~~d~~~~~~p~~~ 247 (569)
.+...+++++........ .....++++++|+|||||||.||+|.++|+ ++. ..... ..+++.++|++++..|++|
T Consensus 182 ~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~ 258 (570)
T 3c5e_A 182 DGWLNFKKLLNEASTTHH-CVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGW 258 (570)
T ss_dssp TTSEEHHHHHHHSCSCCC-CCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTS
T ss_pred cccccHHHHhhccccccc-ccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHH
Confidence 122345565554332221 123567899999999999999999999999 544 33333 5678899999999999999
Q ss_pred hhhHHH-HHHHHHhcceEEEec--cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCH
Q 008342 248 GNGWSY-TWSLAALCGTSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPP 324 (569)
Q Consensus 248 ~~g~~~-~~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~ 324 (569)
.+++.. .+.++..|+++++.. .+++..+++.|+++++|++.++|+++..|.+... .... ++++|.+++||+++++
T Consensus 259 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~-~~~lr~i~~gGe~l~~ 336 (570)
T 3c5e_A 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDL-SSYK-FPHLQNCVTVGESLLP 336 (570)
T ss_dssp HHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCT-TTCC-CTTCCEEEEESSCCCH
T ss_pred HHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccc-cccc-cccceEEEEcCCcCCH
Confidence 999874 555666777777775 6899999999999999999999999999998632 2223 7899999999999999
Q ss_pred HHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceE
Q 008342 325 SLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIG 403 (569)
Q Consensus 325 ~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~G 403 (569)
++.+++.+ +++++++.||+||++..++..... ....+++|.|++++ +++|+|++ +++++.| +.|
T Consensus 337 ~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~v~i~d~~-g~~~~~G--~~G 401 (570)
T 3c5e_A 337 ETLENWRAQTGLDIRESYGQTETGLTCMVSKTM-----------KIKPGYMGTAASCY-DVQIIDDK-GNVLPPG--TEG 401 (570)
T ss_dssp HHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-CEEEECTT-SCBCCTT--CCE
T ss_pred HHHHHHHHHhCCchhhccchhhcccceecCccc-----------ccCCCcccccCCCc-eEEEECCC-CCCCCCC--CCC
Confidence 99999985 599999999999998544332110 12347899999999 69999976 8999988 789
Q ss_pred EEEEe-----cCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCc
Q 008342 404 EIVMR-----GSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLV 478 (569)
Q Consensus 404 el~v~-----~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v 478 (569)
||+++ |++++.||+++++.+.+.|.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|.|
T Consensus 402 El~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V 481 (570)
T 3c5e_A 402 DIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAV 481 (570)
T ss_dssp EEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTE
T ss_pred eeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCc
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHH
Q 008342 479 LEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK 557 (569)
Q Consensus 479 ~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~ 557 (569)
.+++|++.+++..|+.++++|++.++....+.+...++|+++|+++|+.|++|..+.+++ ||+|++||++|++|++.+.
T Consensus 482 ~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~ 561 (570)
T 3c5e_A 482 VETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEW 561 (570)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHT
T ss_pred ceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHH
Confidence 999999999988889999999987654222223357889999999999999999999877 9999999999999999886
Q ss_pred hcCC
Q 008342 558 EMGP 561 (569)
Q Consensus 558 ~~~~ 561 (569)
+...
T Consensus 562 ~~s~ 565 (570)
T 3c5e_A 562 KMSG 565 (570)
T ss_dssp C---
T ss_pred hhhh
Confidence 5543
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-77 Score=621.47 Aligned_cols=497 Identities=18% Similarity=0.206 Sum_probs=418.9
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEee
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNS 99 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 99 (569)
||+.++|+++++++|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhh
Q 008342 100 INIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFL 179 (569)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (569)
+++.++.+++.+++++++++++|++...... . ....++.. ..+..+.
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~--------------~-~~~~~~~~------------------~~~~~~~ 127 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTVT--------------D-LPVRIVSE------------------DNLKDIF 127 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCSS--------------C-CSSEEEET------------------HHHHHHH
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCccccc--------------c-cccceech------------------hhhhhhc
Confidence 9999999999999999999999998543210 0 00111110 0111111
Q ss_pred hcC-CCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 180 ETG-DPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 180 ~~~-~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
... ...........++++++|+|||||||.||+|.+||+++.+........+++.++|++++.+|++|..++...+.++
T Consensus 128 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 207 (512)
T 3fce_A 128 FTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSL 207 (512)
T ss_dssp HHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHH
T ss_pred ccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHH
Confidence 111 1111122335678999999999999999999999999999998888889999999999999999999998888888
Q ss_pred HhcceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-c-
Q 008342 259 ALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K- 333 (569)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~- 333 (569)
+.|+++++.+. +++..+++.++++++|++.++|+++..++......... ++++|.+++||+++++++.+++.+ +
T Consensus 208 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~~G~~l~~~~~~~~~~~~~ 286 (512)
T 3fce_A 208 VTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESM-LPNMKTFLFCGEVLPNEVARKLIERFP 286 (512)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTT-STTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred hCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchh-CccccEEEEecCcCCHHHHHHHHHHCC
Confidence 88888888865 68999999999999999999999999998876555555 889999999999999999999985 4
Q ss_pred CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccc
Q 008342 334 GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVM 413 (569)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 413 (569)
++++++.||+||+++.++.+..... ........++|.|.+++ ++.|+|++ +++++.| +.|||+++|++++
T Consensus 287 ~~~i~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~ 356 (512)
T 3fce_A 287 KATIMNTYGPTEATVAVTGIHVTEE------VLDQYKSLPVGYCKSDC-RLLIMKED-GTIAPDG--EKGEIVIVGPSVS 356 (512)
T ss_dssp TCEEEEEECCGGGSSCSEEEECCHH------HHHHCSSCCCEEECTTC-EEEEECSS-SCBCCTT--SCEEEEEESTTSC
T ss_pred CCEEEeCcccChhhhheeeEEeccc------cccccCCCccccccCCc-EEEEECCC-CCCCCCC--CeEEEEEeccccC
Confidence 8999999999999987765432211 11122346789999999 69999976 9999988 7899999999999
Q ss_pred ccccCCcchhhhhhc----CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCC
Q 008342 414 KGYLKNPKANEEAFA----NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489 (569)
Q Consensus 414 ~gy~~~~~~~~~~~~----~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 489 (569)
.|||++++.+.+.|. +|||+|||+|++ +||++++.||.||+|+++|++|+|.+||++|.++|.|.+++|++.+++
T Consensus 357 ~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 435 (512)
T 3fce_A 357 VGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKG 435 (512)
T ss_dssp SCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEET
T ss_pred hhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecC
Confidence 999999999999983 569999999999 699999999999999999999999999999999999999999999888
Q ss_pred CCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCCc
Q 008342 490 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPV 562 (569)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~ 562 (569)
..++.+++++++.++... +.....++|+++|+++|+.|++|..+.+++ ||+|++||++|++|++.+.++...
T Consensus 436 ~~~~~~~a~vv~~~~~~~-~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~ 508 (512)
T 3fce_A 436 EKYDYLLAVVVPGEHSFE-KEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHH 508 (512)
T ss_dssp TEEEEEEEEEEECSCCCS-SHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC----
T ss_pred CCceEEEEEEecCCcccc-chhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccc
Confidence 888889999988765432 222356789999999999999999999877 999999999999999999877543
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-77 Score=621.09 Aligned_cols=494 Identities=21% Similarity=0.258 Sum_probs=424.0
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKL-SIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
||+.++|+++|+++|+++|+++.++++||+||.++++++|++|.+. |.++|++|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 6899999999999999999999999999999999999999999884 888999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
|+++.++.+++.+++++++++++|++....... .. .. .....+.++
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~------~~-------~~---------------------~~~~~~~~~ 126 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSIDA------VG-------QQ---------------------IQTVSAEEL 126 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC------CC-------CS---------------------SCEEEHHHH
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccchh------cc-------cc---------------------cceecHhhh
Confidence 999999999999999999999999975432100 00 00 011233344
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
+..............++++++|+|||||||.||+|.+||+++.....+....+++.++|++++.+|++|..++...+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 206 (511)
T 3e7w_A 127 LENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCL 206 (511)
T ss_dssp HTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHH
T ss_pred hccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHH
Confidence 43332222222335678999999999999999999999999999998888889999999999999999999988877788
Q ss_pred HhcceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-c-
Q 008342 259 ALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K- 333 (569)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~- 333 (569)
..|+++++.+. +++..+++.++++++|++.++|+++..++......... ++++|.++++|+++++++.+++.+ +
T Consensus 207 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~~~~~~ 285 (511)
T 3e7w_A 207 QSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDL-LPHADTFMFCGEVLPVSVAKALLERFP 285 (511)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred hcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccccc-CCcccEEEEecCCCCHHHHHHHHHHCC
Confidence 88888888765 68999999999999999999999999999876555444 889999999999999999999985 4
Q ss_pred CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccc
Q 008342 334 GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVM 413 (569)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 413 (569)
++++++.||+||+++.++.+..... ........++|.|.+++ +++|+|++ +++++.| +.|||+++|++++
T Consensus 286 ~~~i~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~ 355 (511)
T 3e7w_A 286 KAKIFNTYGPTEATVAVTSVEITND------VISRSESLPVGFAKPDM-NIFIMDEE-GQPLPEG--EKGEIVIAGPSVS 355 (511)
T ss_dssp TCEEEECCCCGGGSSCSEEEEECHH------HHTTCSSCCCBEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSC
T ss_pred CcEEEeCcccchheeeeeEEecccc------ccccCCcCCCcceeCCC-EEEEECCC-CCCCCCC--CceEEEEecCccC
Confidence 8999999999999987765542211 01112235699999999 69999987 9999988 7899999999999
Q ss_pred ccccCCcchhhhhhc--CC--eeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCC
Q 008342 414 KGYLKNPKANEEAFA--NG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489 (569)
Q Consensus 414 ~gy~~~~~~~~~~~~--~g--~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 489 (569)
.|||++++.+.+.|. +| ||+|||+|+++ ||+++++||.||+|+++|++|+|.+||++|.+||.|.+++|++.+++
T Consensus 356 ~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~-dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 434 (511)
T 3e7w_A 356 RGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPN 434 (511)
T ss_dssp CCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE-TTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSS
T ss_pred hhhCCCcccchhhhcCCCCCEEEeCCCeEEcc-CCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCC
Confidence 999999999999983 44 79999999994 99999999999999999999999999999999999999999999988
Q ss_pred CCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 490 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
..++.+++++++.++... +.....++|+++++++||.|++|..+.+++ ||+|++||++|++|++.+....
T Consensus 435 ~~~~~~~a~vv~~~~~~~-~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~ 505 (511)
T 3e7w_A 435 GTVEYLIAAIVPEEHEFE-KEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRS 505 (511)
T ss_dssp SSCCEEEEEEEECCCCCS-SHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred CCceEEEEEEEecccccc-chhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhc
Confidence 888999999998876432 222356889999999999999999999877 9999999999999999988654
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-76 Score=634.61 Aligned_cols=513 Identities=22% Similarity=0.302 Sum_probs=425.5
Q ss_pred CHHHHHHHhhhhCCCceeeee------CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcC
Q 008342 21 TPLWFINRAATLHPTRKSVVY------GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94 (569)
Q Consensus 21 ~l~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 94 (569)
++.++|+++++++|+++|+++ .++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 477899999999999999998 23789999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccccCCHHHHHHHHhcCCceEEEEcccch---------HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhH
Q 008342 95 AVLNSINIRLNATVVAFILSHASSAVVIVDQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE 165 (569)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (569)
++++|+++.++.+++.+++++++++++|+++... ..+.++....+ .....+++.++.......
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~vi~~~~~~~~~~--- 228 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPN-----VTSVEHVIVLKRTGSDID--- 228 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTT-----CCSCCEEEEECSSCCCCC---
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCC-----cCCCCEEEEEeCCCCccc---
Confidence 9999999999999999999999999999987642 22333222110 002345666654321100
Q ss_pred HhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHH-HhHhHhCCCCCcEEEEcCC
Q 008342 166 YALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSL-NGALIWGMNEGAVFLWTLP 244 (569)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~-~~~~~~~~~~~d~~~~~~p 244 (569)
........|++++........ .....++++++|+|||||||.||||+++|++++.... .....++++++|++++..|
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 306 (652)
T 1pg4_A 229 -WQEGRDLWWRDLIEKASPEHQ-PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTAD 306 (652)
T ss_dssp -CCBTTEEEHHHHHTTSCSCCC-CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred -ccCCCceeHHHHHhhcCCCCC-ccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccC
Confidence 001123457777654332221 2234678999999999999999999999999877664 3455688999999999999
Q ss_pred ccchhhHH-HHHHHHHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCcccceeeee
Q 008342 245 MFHGNGWS-YTWSLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNT 317 (569)
Q Consensus 245 ~~~~~g~~-~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~~~~ 317 (569)
++|.+|+. ..+.+++.|+++++.+. +++..+++.|+++++|++.++|++++.|.+.... .... +++||.+++
T Consensus 307 ~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~sLr~i~~ 385 (652)
T 1pg4_A 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD-RSSLRILGS 385 (652)
T ss_dssp TTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCC-CTTCCEEEE
T ss_pred CeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCC-cCceEEEEE
Confidence 99999984 45566777888887754 5899999999999999999999999999886532 2223 889999999
Q ss_pred cCCCCCHHHHHHhhh-cC---CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCc
Q 008342 318 AGAPPPPSLLFAMSQ-KG---FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQ 393 (569)
Q Consensus 318 ~g~~l~~~~~~~~~~-~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~ 393 (569)
||+++++++.+++.+ +| +++++.||+||+++.++...... .....+++|.|++++ +++|+|++ ++
T Consensus 386 gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~s~G~p~~g~-~v~i~d~~-g~ 454 (652)
T 1pg4_A 386 VGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDNE-GH 454 (652)
T ss_dssp ESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECTT-CC
T ss_pred ecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCC---------cCccCCccccCcCCC-eEEEECCC-CC
Confidence 999999999999984 46 89999999999997665543211 112347899999999 69999986 89
Q ss_pred ccCCCCCceEEEEEec--CcccccccCCcchhhhhh---cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHH
Q 008342 394 PVPADGKTIGEIVMRG--SCVMKGYLKNPKANEEAF---ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEV 468 (569)
Q Consensus 394 ~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~i 468 (569)
+++.| +.|||+++| |+++.|||++++.+...| .+|||+|||+|++++||+++|+||.||+||++|++|+|.||
T Consensus 455 ~v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eI 532 (652)
T 1pg4_A 455 PQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEI 532 (652)
T ss_dssp BCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHH
T ss_pred CcCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 99887 899999999 789999999998887766 37999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcc
Q 008342 469 EKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKI 547 (569)
Q Consensus 469 E~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi 547 (569)
|++|.+||.|.+|+|++.+++..|+.++++|++.++... .+...++|+++|+++|+.|++|..+++++ ||+|++||+
T Consensus 533 E~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~--~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi 610 (652)
T 1pg4_A 533 ESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEP--SPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKI 610 (652)
T ss_dssp HHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC--CHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCB
T ss_pred HHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCC--CHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccc
Confidence 999999999999999999998889999999998876432 11256889999999999999999999877 999999999
Q ss_pred cHHHHHHHHHhc
Q 008342 548 QKHLLRAKAKEM 559 (569)
Q Consensus 548 ~r~~l~~~~~~~ 559 (569)
+|++|++++.+.
T Consensus 611 ~R~~L~~~~~~~ 622 (652)
T 1pg4_A 611 MRRILRKIAAGD 622 (652)
T ss_dssp CHHHHHHHHHTC
T ss_pred hHHHHHHHHhCC
Confidence 999999999865
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-76 Score=632.86 Aligned_cols=517 Identities=21% Similarity=0.295 Sum_probs=422.1
Q ss_pred cCHHHHHHHhhhhCCCceeeee------CCeeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCchhHHHHHHHhhh
Q 008342 20 LTPLWFINRAATLHPTRKSVVY------GSKHYTWHQTYRRCRRFASALS-KLSIGLGTTVSVIAPNVPAMYEAQFGAPM 92 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~la~~L~-~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 92 (569)
.++.++|+++++++|+++|+++ ..+++||+||.+++.++|++|+ ++|+++||+|+++++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 3578899999999999999998 3478999999999999999999 99999999999999999999999999999
Q ss_pred cCceEeeccccCCHHHHHHHHhcCCceEEEEcccchH---------HHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhh
Q 008342 93 AGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFS---------LAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ 163 (569)
Q Consensus 93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (569)
+|++++|+++.++.+++.+++++++++++|+++.... .+.++...++ ...++++++........
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~vi~~~~~~~~~~~ 234 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP-------GVRHVLVYRKTNNPSVA 234 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCT-------TCCEEEEECSSCCSSCC
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCC-------CCceEEEEecCCCCccc
Confidence 9999999999999999999999999999999876432 2222222111 23566666543210000
Q ss_pred hHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHH-hHhHhCCCCCcEEEEc
Q 008342 164 LEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLN-GALIWGMNEGAVFLWT 242 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~-~~~~~~~~~~d~~~~~ 242 (569)
. .......|.+++.......+ ..+..++++++|+|||||||.||+|+++|.+++..... ....+++.++|++++.
T Consensus 235 ~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~ 310 (663)
T 1ry2_A 235 F---HAPRDLDWATEKKKYKTYYP-CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA 310 (663)
T ss_dssp C---CSSSEEEHHHHHTTSCSCCC-CCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEEC
T ss_pred c---CCCccccHHHHHhhcCCCCC-ccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 0 01123456776654332221 22346789999999999999999999999998766643 4456889999999999
Q ss_pred CCccchhhHH-HHHHHHHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCcccceee
Q 008342 243 LPMFHGNGWS-YTWSLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNV 315 (569)
Q Consensus 243 ~p~~~~~g~~-~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~~ 315 (569)
.|++|..|+. ..+.+++.|+++++.+. +++..+++.|+++++|++.++|++++.|.+.... .... +++||.+
T Consensus 311 ~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~-l~sLr~i 389 (663)
T 1ry2_A 311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHS-LKSLRCL 389 (663)
T ss_dssp SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCC-CTTCCEE
T ss_pred CCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCC-cCceEEE
Confidence 9999999984 45566677888888753 5889999999999999999999999999887542 2223 8999999
Q ss_pred eecCCCCCHHHHHHhhh-cC---CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCC
Q 008342 316 NTAGAPPPPSLLFAMSQ-KG---FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDART 391 (569)
Q Consensus 316 ~~~g~~l~~~~~~~~~~-~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~ 391 (569)
+++|+++++++.+++.+ +| +++++.||+||+++.++.+.... ......+++|.|++++ +++|+|+++
T Consensus 390 ~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~--------~~~~~~gs~G~p~~g~-~v~i~d~~~ 460 (663)
T 1ry2_A 390 GSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG--------VTPMKPGSASFPFFGI-DAVVLDPNT 460 (663)
T ss_dssp EECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT--------CCCCCTTCCCEECTTC-CEEEECSSS
T ss_pred EEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCC--------CcccCCCccccCcCCC-eEEEEcCCC
Confidence 99999999999999985 46 89999999999987666543210 0112347899999999 699999866
Q ss_pred CcccCC-CCCceEEEEEec--CcccccccCCcchhhhhh---cCCeeecCceeEEcCCCeEEEecccCceEEeCceeech
Q 008342 392 NQPVPA-DGKTIGEIVMRG--SCVMKGYLKNPKANEEAF---ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISS 465 (569)
Q Consensus 392 ~~~~~~-~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~ 465 (569)
|++++. | +.|||+++| |+++.|||++++.+.+.| .+|||+|||+|++++||+++|+||.||+||++|++|+|
T Consensus 461 g~~v~~~g--~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~ 538 (663)
T 1ry2_A 461 GEELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLST 538 (663)
T ss_dssp TTCEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCH
T ss_pred CCcCCCCC--cceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCH
Confidence 999987 5 789999999 589999999998887776 37999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcc---h--hhhhhHHHHHHHHHHhcCCCCcCCceEEecc-C
Q 008342 466 VEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEAD---E--LDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-L 539 (569)
Q Consensus 466 ~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~---~--~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-l 539 (569)
.+||++|.+||.|.+++|++.+++..|+.++++|++.++.. . .......++|+++|+++|+.|++|..+++++ |
T Consensus 539 ~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~l 618 (663)
T 1ry2_A 539 AEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDL 618 (663)
T ss_dssp HHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCC
T ss_pred HHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCC
Confidence 99999999999999999999999888999999999887643 1 0001257899999999999999999999887 9
Q ss_pred CCCCCCcccHHHHHHHHHhc
Q 008342 540 PKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 540 P~t~~GKi~r~~l~~~~~~~ 559 (569)
|+|++||++|++|++++.++
T Consensus 619 P~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 619 PKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CBCTTSCBCHHHHHHSCC--
T ss_pred CCCCccCchHHHHHHHHcCC
Confidence 99999999999999987654
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-75 Score=623.83 Aligned_cols=501 Identities=23% Similarity=0.342 Sum_probs=425.3
Q ss_pred ccccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcC
Q 008342 15 ANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94 (569)
Q Consensus 15 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 94 (569)
.-|.++|+.++|++++. |+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 22 ~~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG 99 (617)
T 3rg2_A 22 GYWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLG 99 (617)
T ss_dssp TSCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcC
Confidence 34678999999999997 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccccCCHHHHHHHHhcCCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhh
Q 008342 95 AVLNSINIRLNATVVAFILSHASSAVVIVDQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALA 169 (569)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (569)
++++|+++.++.+++.++++++++++++++.... ........... ....+..+.+...
T Consensus 100 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------- 162 (617)
T 3rg2_A 100 VAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHS-------SIRVVQLLNDSGE---------- 162 (617)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHST-------TCCEEEEETCCST----------
T ss_pred eEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCC-------ccceeeecccccc----------
Confidence 9999999999999999999999999999987653 22232222222 2333444433221
Q ss_pred cchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchh
Q 008342 170 RGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGN 249 (569)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 249 (569)
..+.+......... ...+..++++++|+|||||||.||+|+++|+++.+........+++.++|++++.+|++|.+
T Consensus 163 ---~~~~~~~~~~~~~~-~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 238 (617)
T 3rg2_A 163 ---HNLQDAINHPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNY 238 (617)
T ss_dssp ---TBHHHHHHSCCSSC-CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHH
T ss_pred ---cchhhhhccccccc-CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhh
Confidence 12333333222221 22345678999999999999999999999999999999888899999999999999999999
Q ss_pred hHHH--HHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCC-CCCcccceeeeecCCCCCHHH
Q 008342 250 GWSY--TWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT-ILPLTNVVNVNTAGAPPPPSL 326 (569)
Q Consensus 250 g~~~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~l~~l~~~~~~g~~l~~~~ 326 (569)
++.. .+.+++.|+++++.+.+++..+++.++++++|++.++|+++..+++...... ...++++|.+++||+++++++
T Consensus 239 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~ 318 (617)
T 3rg2_A 239 AMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATL 318 (617)
T ss_dssp HHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHH
T ss_pred hhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHH
Confidence 8863 6777788998888888899999999999999999999999999887533221 112889999999999999999
Q ss_pred HHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCcee-eccCCceeeeCCCCcccCCCCCceEE
Q 008342 327 LFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT-ICLDGLDVIDARTNQPVPADGKTIGE 404 (569)
Q Consensus 327 ~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~i~d~~~~~~~~~~~~~~Ge 404 (569)
.+++.+ +++++++.||+||++..++.+. ........++|.|+ ++. ++.|+|++ ++++|.| +.||
T Consensus 319 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~p~G--~~GE 384 (617)
T 3rg2_A 319 AARIPAEIGCQLQQVFGMAEGLVNYTRLD----------DSAEKIIHTQGYPMCPDD-EVWVADAE-GNPLPQG--EVGR 384 (617)
T ss_dssp HHHHHHHTCSEEEEEEEETTEEEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEE
T ss_pred HHHHHHHhCCcEEEEeccCcceeecccCC----------CcccccccCCCccCCCCc-eEEEECCC-CCCCCCC--CceE
Confidence 999985 4999999999999875433221 11223346789997 555 69999976 8999998 8999
Q ss_pred EEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEE
Q 008342 405 IVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483 (569)
Q Consensus 405 l~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 483 (569)
|+++|++++.||+++++.+.+.| .++||+|||+|++++||.++++||.||+||++|++|+|.+||++|.+||.|.+++|
T Consensus 385 l~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~v 464 (617)
T 3rg2_A 385 LMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAAL 464 (617)
T ss_dssp EEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEE
T ss_pred EEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEE
Confidence 99999999999999999999999 68999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHh-cCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 484 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
++.+++..|+.++++++..+.. ...++++++++ .||.|++|..+++++ ||+|++||++|++|++.+.+.
T Consensus 465 v~~~~~~~~~~~~a~vv~~~~~-------~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 535 (617)
T 3rg2_A 465 VSMEDELMGEKSCAYLVVKEPL-------RAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535 (617)
T ss_dssp EEEEETTTEEEEEEEEEESSCC-------CHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred EeccCcccCeeEEEEEEeCCCC-------CHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcc
Confidence 9999888889999999987643 34778999998 699999999999877 999999999999999988653
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-76 Score=619.39 Aligned_cols=479 Identities=18% Similarity=0.259 Sum_probs=406.7
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
..++.++|+++++++|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV 117 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
|+++.++.+++.+++++++++++|++.+....... .. ....+..+.... +
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~-------~~~~~~~~~~~~-------------------~ 167 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQ-------FNGQVEIFEEDT-------------------I 167 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SC-------CCSEEEECCCST-------------------T
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----cc-------ccCceeeecchh-------------------h
Confidence 99999999999999999999999999875432211 10 112233222210 0
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
... .......+..++++++|+|||||||.||+|++||+++.+........+++.++|++++..|++|..++...+.++
T Consensus 168 ~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 245 (563)
T 1amu_A 168 KIR--EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMAL 245 (563)
T ss_dssp TTS--CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHH
T ss_pred ccc--cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHH
Confidence 000 111112234678999999999999999999999999998888877788999999999999999999988777777
Q ss_pred HhcceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCC
Q 008342 259 ALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGF 335 (569)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~ 335 (569)
+.|+++++.+. +++..+++.++++++|++.++|+++..+... . ++++|.+++||+++++++.+++.+. +
T Consensus 246 ~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~-~~~lr~~~~gG~~l~~~~~~~~~~~-~ 317 (563)
T 1amu_A 246 LTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------R-ILSIQTLITAGSATSPSLVNKWKEK-V 317 (563)
T ss_dssp TTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------T-CCSCSEEEEESSCCCHHHHHHHTTT-S
T ss_pred HCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------c-cccccEEEEEEecCCHHHHHHHHhC-C
Confidence 88888887755 6899999999999999999999998877532 2 6889999999999999999999864 8
Q ss_pred eEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccccc
Q 008342 336 RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKG 415 (569)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~g 415 (569)
++++.||+||++++++.+...... .....++|.|++++ +++|+|++ +++++.| +.|||+++|++++.|
T Consensus 318 ~~~~~YG~TE~~~~~~~~~~~~~~--------~~~~~~vG~p~~~~-~v~i~d~~-~~~~~~g--~~GEl~v~g~~v~~G 385 (563)
T 1amu_A 318 TYINAYGPTETTICATTWVATKET--------IGHSVPIGAPIQNT-QIYIVDEN-LQLKSVG--EAGELCIGGEGLARG 385 (563)
T ss_dssp EEEEEECCGGGSSCSEEEECCSSC--------CCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCCCE
T ss_pred eEEEEECcCHHhHhheeeeccccc--------CCCCCcccceeCCC-EEEEECCC-cCCCCCC--CcEEEEEechhhChh
Confidence 999999999998776654322211 11236899999999 69999976 8999988 899999999999999
Q ss_pred ccCCcchhhhhhc-------CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecC
Q 008342 416 YLKNPKANEEAFA-------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488 (569)
Q Consensus 416 y~~~~~~~~~~~~-------~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 488 (569)
||++++.+.+.|. ++||+|||+|++++||+++++||.||+|+++|++|+|.+||++|.+||.|.+++|++.++
T Consensus 386 Y~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~ 465 (563)
T 1amu_A 386 YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKD 465 (563)
T ss_dssp ETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEC
T ss_pred hCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeec
Confidence 9999999999884 249999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHH
Q 008342 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA 556 (569)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (569)
+..++.++++++..... ..++|+++|+++|+.|++|..+++++ ||+|++||++|++|++..
T Consensus 466 ~~~~~~~~a~vv~~~~~-------~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 466 HQEQPYLCAYFVSEKHI-------PLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp TTSCEEEEEEEEESSCC-------CHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred CCCCeEEEEEEEeCCCC-------CHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 88889999999876432 34789999999999999999999877 999999999999998653
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-75 Score=613.27 Aligned_cols=500 Identities=25% Similarity=0.328 Sum_probs=406.9
Q ss_pred ccC-HHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 19 ALT-PLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 19 ~~~-l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
.++ +.++|+++++ +|+++|+++.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+++
T Consensus 22 ~~~~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 100 (529)
T 2v7b_A 22 LFNFAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVP 100 (529)
T ss_dssp CCCHHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEE
T ss_pred ceeHHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceE
Confidence 444 8899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCc-CeEEEecCCCcchhhhHHhhhcchhhHH
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKT-PHLIVIGDESCDSKQLEYALARGAIEYE 176 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (569)
+|+++.++.+++.+++++++++++|++.+....+.......+ .. ..++.++..... ......++
T Consensus 101 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--------~~~~~~~~ 165 (529)
T 2v7b_A 101 VVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAE-------HDGCQLIVSQPRESE--------PRLAPLFE 165 (529)
T ss_dssp EECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----------CCEEEEECC--------------CCCBHH
T ss_pred EecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhcc-------ccCceEEEecccccc--------cccccchh
Confidence 999999999999999999999999999887655544332211 12 344444432110 00112455
Q ss_pred hhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHH-HHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHH
Q 008342 177 KFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGA-YLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 255 (569)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~-~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (569)
+++....... ......++++++++|||||||.||+|.++|+++ ..........+++.++|++++.+|++|.+|+...+
T Consensus 166 ~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 244 (529)
T 2v7b_A 166 ELIDAAAPAA-KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGL 244 (529)
T ss_dssp HHHHTSCCCS-SCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHT
T ss_pred hhhccCCCcc-cccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHH
Confidence 5554322221 122356789999999999999999999999998 56555555567889999999999999999987644
Q ss_pred -HHHHhcceEEEe-ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-
Q 008342 256 -SLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ- 332 (569)
Q Consensus 256 -~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~- 332 (569)
..+..|+++++. ..+++..+++.++++++|++.++|+++..+++........ ..++|.+++||+++++++.+++.+
T Consensus 245 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gGe~l~~~~~~~~~~~ 323 (529)
T 2v7b_A 245 TFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARA-DVAIRICTSAGEALPREIGERFTAH 323 (529)
T ss_dssp HHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGG-GCCCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccccccc-CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 455667766666 5689999999999999999999999999998765443332 238999999999999999999985
Q ss_pred cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcc
Q 008342 333 KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV 412 (569)
Q Consensus 333 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 412 (569)
+++++++.||+||++++++.+.... ...+++|.|++++ +++|+|++ +++++.| +.|||+++|+++
T Consensus 324 ~g~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~~ 388 (529)
T 2v7b_A 324 FGCEILDGIGSTEMLHIFLSNRAGA-----------VEYGTTGRPVPGY-EIELRDEA-GHAVPDG--EVGDLYIKGPSA 388 (529)
T ss_dssp HSCCEEEEEECTTTSSEEEECCTTC-----------CCTTSCCEECTTC-EEEEECTT-SCBCCTT--SCEEEEEECTTC
T ss_pred hCCceeeeEchhhcCceeeccccCC-----------CccCCcccCCCCC-EEEEECCC-CCCCCCC--CccEEEEecCCc
Confidence 4999999999999976554432111 2337899999999 69999975 8999988 899999999999
Q ss_pred cccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCC
Q 008342 413 MKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 492 (569)
Q Consensus 413 ~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g 492 (569)
+.||+++++.+...|.+|||+|||+|+++++|++++.||.||+||++|++|+|.+||++|.+||+|.+++|++. ++..+
T Consensus 389 ~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~ 467 (529)
T 2v7b_A 389 AVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGL 467 (529)
T ss_dssp CCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTE
T ss_pred ccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 66667
Q ss_pred ceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHH
Q 008342 493 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 554 (569)
Q Consensus 493 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (569)
+.+++++++.++... .+...++|+++|+++|+.|++|..+.+++ ||+|++||++|++|++
T Consensus 468 ~~~~a~vv~~~~~~~--~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 468 VKTRAFVVLKREFAP--SEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEEEEEECTTCCC--CHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred eEEEEEEEecCCCCc--chhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 888999998765421 11144689999999999999999999877 9999999999999985
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-76 Score=612.80 Aligned_cols=497 Identities=21% Similarity=0.300 Sum_probs=390.1
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEee
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNS 99 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 99 (569)
||+.++|+++++++|+++|+++.++++||+||.++++++|++|.+. +||+|+++++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 5788999999999999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcc-hhhHHhh
Q 008342 100 INIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARG-AIEYEKF 178 (569)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~ 178 (569)
+++.++.+++.+++++++++++|++.+.......... .. ....+........ ......... ......+
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 146 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LD-------DIEFAGRDITTNG---LLDNTMGIQYDTSNETV 146 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TT-------C--------------------------------
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cc-------cceeeeeeccccc---ccccccccccccchhhc
Confidence 9999999999999999999999998765332100000 00 0000000000000 000000000 0001111
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
...............++++++|+|||||||.||+|.+||+++..........+++.++|++++.+|++|.+|+...+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l 226 (501)
T 3ipl_A 147 VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAV 226 (501)
T ss_dssp ---CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred cccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHH
Confidence 11111111112335678999999999999999999999999999998888889999999999999999999998888888
Q ss_pred HhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCCeEe
Q 008342 259 ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRIT 338 (569)
Q Consensus 259 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~ 338 (569)
..|+++++.+.+++..+++.|+++++|++.++|+++..|.+..... ..++|.+++||+++++++.+++.+.+++++
T Consensus 227 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~ 302 (501)
T 3ipl_A 227 IEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHE----PYNLQKILLGGAKLSATMIETALQYNLPIY 302 (501)
T ss_dssp HHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCS----CTTCCEEEECSSCCCHHHHHHHHHTTCCEE
T ss_pred HcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCC----cCcccEEEEeCCCCCHHHHHHHHHhCCCEe
Confidence 8899988888899999999999999999999999999999876543 238999999999999999999998899999
Q ss_pred cccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccC
Q 008342 339 HTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 418 (569)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~ 418 (569)
+.||+||+++.++.+. .........++|.|++++ +++|+|++. + +.|||+++|+.++.||++
T Consensus 303 ~~YG~TE~~~~~~~~~---------~~~~~~~~~~~G~p~~~~-~~~i~d~~~------~--~~GEl~v~g~~~~~gY~~ 364 (501)
T 3ipl_A 303 NSFGMTETCSQFLTAT---------PEMLHARPDTVGMPSANV-DVKIKNPNK------E--GHGELMIKGANVMNGYLY 364 (501)
T ss_dssp EEEEEGGGTEEEEEEC---------HHHHHHCTTCCBEECTTC-EEEEESCCS------S--CCEEEEEESTTSCSCCSB
T ss_pred ccccccccccceeecC---------ccccccCCCCCCCCCCCc-EEEEecCCC------C--CccEEEEeccchhhhhCc
Confidence 9999999986554432 112233457899999999 699999761 2 579999999999999999
Q ss_pred CcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEE
Q 008342 419 NPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF 498 (569)
Q Consensus 419 ~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~ 498 (569)
+++.+.. |.+|||+|||+|+++++|+++++||.||+|+++|++|+|.+||++|.+||+|.+++|++.+++..|+.++++
T Consensus 365 ~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~ 443 (501)
T 3ipl_A 365 PTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLY 443 (501)
T ss_dssp STTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred Chhhcch-hcCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEE
Confidence 9998887 899999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 499 VTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 499 v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
++..... ..++|+++|+++|+.|++|..+.+++ ||+|++||++|++|++...+..
T Consensus 444 v~~~~~~-------~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~~ 499 (501)
T 3ipl_A 444 FVSESDI-------SKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHHH 499 (501)
T ss_dssp EEESSCC-------CHHHHHHHHHHHSCGGGSCSEEEECSSCC--------------------
T ss_pred EEeCCCC-------CHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccccc
Confidence 8865433 34789999999999999999999887 9999999999999998877653
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-75 Score=613.63 Aligned_cols=498 Identities=21% Similarity=0.221 Sum_probs=408.0
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
..|+.++|+++++++|+++|+.+.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v 82 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYI 82 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
|+++.++.+++.+++++++++++|++++....+ ....++.+. .+...
T Consensus 83 pl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~---------------~~~~~~~~~------------------~~~~~ 129 (521)
T 3l8c_A 83 PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI---------------EGISLVSLS------------------EIESA 129 (521)
T ss_dssp EEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC---------------TTSEEEEHH------------------HHHHH
T ss_pred ecCccccHHHHHHHHHhCCCCEEEecCcccccc---------------ccCcccchh------------------hhhhc
Confidence 999999999999999999999999987643211 011111111 01111
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH--hCCCCCcEEEEcCCccchhhHHHHHH
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWS 256 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~--~~~~~~d~~~~~~p~~~~~g~~~~~~ 256 (569)
.....+ ........++++++|+|||||||.||+|++||+++.+...+.... +++.+++++++..|++|..++...+.
T Consensus 130 ~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 208 (521)
T 3l8c_A 130 KLAEMP-YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAP 208 (521)
T ss_dssp HHHTCC-CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHH
T ss_pred ccccCC-cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHH
Confidence 111111 111233567899999999999999999999999998877766554 67889999999999999999887777
Q ss_pred HHHhcceEEEeccC---ChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc
Q 008342 257 LAALCGTSICLRQV---TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK 333 (569)
Q Consensus 257 ~~~~g~~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~ 333 (569)
.+..|+++++.+.. ++..+++.+.++++|++.++|+++..+.......... ++++|.+++||+++++++.+++.+.
T Consensus 209 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~~ 287 (521)
T 3l8c_A 209 TLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAK-MPALTHFYFDGEELTVSTARKLFER 287 (521)
T ss_dssp HHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcccccc-CccceEEEEecccCCHHHHHHHHHH
Confidence 77888888877653 8899999999999999999999999998876554444 8999999999999999999998844
Q ss_pred --CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCc
Q 008342 334 --GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC 411 (569)
Q Consensus 334 --~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 411 (569)
++++++.||+||+++.++.+..... ........++|.|++++ +++|+|++ +++++.| +.|||+++|++
T Consensus 288 ~~~~~i~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~ 357 (521)
T 3l8c_A 288 FPSAKIINAYGPTEATVALSAIEITRE------MVDNYTRLPIGYPKPDS-PTYIIDED-GKELSSG--EQGEIIVTGPA 357 (521)
T ss_dssp CTTCEEEEEECCGGGSSCSEEEEECHH------HHHHCSSCEEEEECTTS-CEEEECTT-SCBCCTT--CCEEEEEESTT
T ss_pred CCCceEEeCcCccHHhhhhceeecccc------cccCCCccccccccCCC-EEEEECCC-cCCCCCC--CceEEEecccc
Confidence 8999999999999987765432211 11122346799999999 69999976 8999988 78999999999
Q ss_pred ccccccCCcchhhhhh----cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeec
Q 008342 412 VMKGYLKNPKANEEAF----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487 (569)
Q Consensus 412 ~~~gy~~~~~~~~~~~----~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 487 (569)
++.|||++++.+.+.| .+|||+|||+|+++++|++++.||.||+|+++|++|+|.+||++|.++|.|.+++|++.+
T Consensus 358 v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 437 (521)
T 3l8c_A 358 VSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRY 437 (521)
T ss_dssp SCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCC
T ss_pred cChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEee
Confidence 9999999999999988 357999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC-CCceeeEEEEecCCcchh--hhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCC
Q 008342 488 DER-WGESPCAFVTLKPEADEL--DKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP 561 (569)
Q Consensus 488 ~~~-~g~~~~~~v~~~~~~~~~--~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~ 561 (569)
++. .++.++++|++.++.... ......++|+++|+++|+.|++|..+.+++ ||+|++||++|++|++.+.++..
T Consensus 438 ~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~ 515 (521)
T 3l8c_A 438 NKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREG 515 (521)
T ss_dssp SSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC----
T ss_pred cCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCc
Confidence 554 467899999988775321 112356889999999999999999999887 99999999999999998876543
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-76 Score=626.44 Aligned_cols=483 Identities=21% Similarity=0.271 Sum_probs=319.7
Q ss_pred cccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 18 TALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
...++.++|+++++++|+++|+++.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHh
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEK 177 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (569)
+|+++.++.+++.+++++++++++|++.+....+ .....+.+.+..
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~~------------------- 198 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL---------------TGTTTLYVEDEA------------------- 198 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS---------------CSSEEEECCC---------------------
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc---------------cCCcceeeeccc-------------------
Confidence 9999999999999999999999999987643211 111111111110
Q ss_pred hhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHH
Q 008342 178 FLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSL 257 (569)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 257 (569)
..............++++++|+|||||||.||+|+++|+++.+.... ...+++.++|+++..+|++|..+....+.+
T Consensus 199 --~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 275 (570)
T 4gr5_A 199 --ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGA 275 (570)
T ss_dssp -------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHH
T ss_pred --cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHH
Confidence 00011111223356789999999999999999999999998766544 345678899999999999887777777777
Q ss_pred HHhcceEEEec--cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc--
Q 008342 258 AALCGTSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-- 333 (569)
Q Consensus 258 ~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~-- 333 (569)
++.|+++++.+ .+++..+++.|+++++|++.++|+++..|.+.... . ++++|.+++||++++++..+++.+.
T Consensus 276 l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---~-~~~lr~~~~gG~~l~~~~~~~~~~~~~ 351 (570)
T 4gr5_A 276 LLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE---A-FEGVRYAITGGEPASVPHVAKARRDHP 351 (570)
T ss_dssp HTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG---G-GTTCSEEEEESSCCCHHHHHHHHHHCT
T ss_pred HhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh---h-CCCceEEEEecccCCHHHHHHHHHhCC
Confidence 78888888775 47899999999999999999999999999876532 2 8899999999999999998888744
Q ss_pred CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccc
Q 008342 334 GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVM 413 (569)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 413 (569)
++++++.||+||++++++.+..... .......++|.|++++ +++|+|++ +++++.| +.|||+|+|++++
T Consensus 352 ~~~l~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~v~i~d~~-~~~~~~G--~~GEl~v~g~~v~ 420 (570)
T 4gr5_A 352 ALRLGNGYGPAESMGFTTHHAVVAG-------DLSGTALPIGVPLAGK-RAYVLDDD-LKPAANG--ALGELYVAGAGLA 420 (570)
T ss_dssp TCEEEEEECCGGGCSCSEEEECCGG-------GTTSSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCC
T ss_pred CcEEEEeechhhheeeeeeeeeccc-------ccCCCccccceeeCCC-EEEEECCC-CCCCCCC--CcEEEEEeecccc
Confidence 8999999999999887765432211 1112235689999999 69999976 8999988 8999999999999
Q ss_pred ccccCCcchhhhhhc---------CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEE
Q 008342 414 KGYLKNPKANEEAFA---------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484 (569)
Q Consensus 414 ~gy~~~~~~~~~~~~---------~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 484 (569)
.|||++++.+.+.|. +|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||.|.+++|+
T Consensus 421 ~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv 500 (570)
T 4gr5_A 421 HGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVL 500 (570)
T ss_dssp CEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC---------------------------------
T ss_pred hhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEE
Confidence 999999999999984 26999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHH
Q 008342 485 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA 556 (569)
Q Consensus 485 ~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (569)
+.+++.+++.++++++........ ..++|+++|+++|+.|++|..+++++ ||+|++||++|++|++..
T Consensus 501 ~~~~~~~~~~~~a~vv~~~~~~~~----~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 501 AQDSRLGDKQLVAYVVAERADAPP----DAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp -------------------------------------------------------------------------
T ss_pred EeeCCCCCeEEEEEEEecCCCCCc----CHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence 999888889999999876543221 56789999999999999999998777 999999999999998753
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-74 Score=615.17 Aligned_cols=478 Identities=16% Similarity=0.194 Sum_probs=395.3
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
.+.+.|+.++|+++++++|+++|+++.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 23 ~~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa 102 (620)
T 4dg8_A 23 LYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGH 102 (620)
T ss_dssp GGGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhH
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEY 175 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (569)
+++|++|.++.+++.++++++++++++++....... .....+.+..
T Consensus 103 ~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~---------------~~~~~~~~~~------------------- 148 (620)
T 4dg8_A 103 HYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA---------------NGLPCVPVRH------------------- 148 (620)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC---------------TTSCEEEGGG-------------------
T ss_pred EEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc---------------cCCceeeecc-------------------
Confidence 999999999999999999999999999765432100 0000111100
Q ss_pred HhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHH
Q 008342 176 EKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 255 (569)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (569)
.. ............++++++|+|||||||.||+|+++|+++.+.... ...+++.++|+++...|++|..++...+
T Consensus 149 --~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 223 (620)
T 4dg8_A 149 --LP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIW 223 (620)
T ss_dssp --CC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHH
T ss_pred --CC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHH
Confidence 00 011111112346789999999999999999999999998776654 4567889999999999999999998888
Q ss_pred HHHHhcceEEEec--cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-
Q 008342 256 SLAALCGTSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ- 332 (569)
Q Consensus 256 ~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~- 332 (569)
.+++.|+++++.+ .+++..+++.|+++++|++.++|+++..+.+.... . ++++|.+++||++++++..+++.+
T Consensus 224 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~---~-l~~lr~v~~gGe~l~~~~~~~~~~~ 299 (620)
T 4dg8_A 224 GALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPD---C-LGGLRQLLTGGDILSVPHVRRALLR 299 (620)
T ss_dssp HHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGG---G-GTTCSEEEEESSCCCHHHHHHHHHH
T ss_pred HHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChh---h-CCCccEEEEEeCcCCHHHHHHHHHh
Confidence 8888899888863 57899999999999999999999999999875332 2 789999999999999888888763
Q ss_pred c-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCc
Q 008342 333 K-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC 411 (569)
Q Consensus 333 ~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 411 (569)
. ++++++.||+||++.+++.+.... ........++|.|++++ +++|+|++....+|.| +.|||+|+|++
T Consensus 300 ~~~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~G~~ 369 (620)
T 4dg8_A 300 HPRLHLVNGYGPTENTTFTCCHVVTD-------DDLEEDDIPIGKAIAGT-AVLLLDEHGQEIAEPD--RAGEIVAFGAG 369 (620)
T ss_dssp CTTCEEEEEECCGGGCSCSEEEECCT-------GGGGSSSCCCBEECTTE-EEEEECTTSCBCCSSS--CCEEEEEEETT
T ss_pred CCCeEEEeeEchhhhhhheEEEeccc-------cccCCCCCCceecccCc-EEEEECccCCCCCCCC--CceEEEEeccc
Confidence 3 899999999999997776543221 11223346899999999 6999998844447777 78999999999
Q ss_pred ccccccCCcchhhhhhcC--------CeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEE
Q 008342 412 VMKGYLKNPKANEEAFAN--------GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483 (569)
Q Consensus 412 ~~~gy~~~~~~~~~~~~~--------g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 483 (569)
++.||+++++.+.+.|.+ +||+|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.+|+|
T Consensus 370 v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~V 449 (620)
T 4dg8_A 370 LAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCAL 449 (620)
T ss_dssp CCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEE
T ss_pred cccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEE
Confidence 999999999999999954 799999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 484 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
++.+++..++ ++++++.... .+.+.++++||.|++|..+++++ ||+|++||++|++|++.+.+
T Consensus 450 v~~~~~~~~~-lv~~~~~~~~-----------~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 450 LVRERNGVKQ-LLCAWTGKAD-----------ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp EEEEETTEEE-EEEEEEECTT-----------CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred EEEeCCCceE-EEEEEecChH-----------HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 9988775444 4444443221 23345667899999999999877 99999999999999987654
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-75 Score=655.87 Aligned_cols=512 Identities=24% Similarity=0.343 Sum_probs=342.8
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYG--SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
++|+.++|+++++++|+++|+++. ++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 589999999999999999999987 689999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHH
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYE 176 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (569)
++|++|.++.+++.+++++++++++|++.+....+....... ...++.+++..... ...+...|.
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~------~~~~~~~~~ 204 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD---------GVVIVCIDDNESVP------IPEGCLRFT 204 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS---------CCEEEECCCCTTSC------CCTTEEEGG
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC---------CceEEEeCCccccc------CCcccccHH
Confidence 999999999999999999999999999988766555443221 23345544321110 112234455
Q ss_pred hhhhcCCCC--CCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHh----HhCCCCCcEEEEcCCccchhh
Q 008342 177 KFLETGDPE--FAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL----IWGMNEGAVFLWTLPMFHGNG 250 (569)
Q Consensus 177 ~~l~~~~~~--~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g 250 (569)
++....... ........++++++|+|||||||.||+|+++|+++......... .+++.++|++++.+|++|.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 284 (979)
T 3tsy_A 205 ELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYA 284 (979)
T ss_dssp GTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHH
T ss_pred HHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHH
Confidence 554433221 11223457889999999999999999999999999888766543 356889999999999999999
Q ss_pred HHHH-HHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHH
Q 008342 251 WSYT-WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFA 329 (569)
Q Consensus 251 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~ 329 (569)
+... +..+..|+++++.+.+++..+++.|+++++|++.++|+++..|.+........ ++++|.+++||+++++++.++
T Consensus 285 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gg~~l~~~~~~~ 363 (979)
T 3tsy_A 285 LNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYD-LSSIRVVKSGAAPLGKELEDA 363 (979)
T ss_dssp HHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSC-CTTCCEEEESSCCCCSSHHHH
T ss_pred HHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCC-ccceEEEEEcCCCCCHHHHHH
Confidence 8654 44556677777778899999999999999999999999999999876555545 899999999999999999999
Q ss_pred hhh-c-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEE
Q 008342 330 MSQ-K-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVM 407 (569)
Q Consensus 330 ~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v 407 (569)
+.+ + ++++++.||+||++++++.+..... .......+++|.|++++ +++|+|++++++++.| +.|||+|
T Consensus 364 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i 434 (979)
T 3tsy_A 364 VNAKFPNAKLGQGYGMTEAGPVLAMSLGFAK------EPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICI 434 (979)
T ss_dssp HHHHCTTCEEEECEECGGGCSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEE
T ss_pred HHHHCCCCeEEeeechhhhhHHHHhCCCCCC------CccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEE
Confidence 985 4 8999999999999976655421111 01112347899999999 6999998889999988 7899999
Q ss_pred ecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEee
Q 008342 408 RGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 486 (569)
Q Consensus 408 ~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 486 (569)
+|++++.||+++++.+.+.| .+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||.|.+++|++.
T Consensus 435 ~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~ 514 (979)
T 3tsy_A 435 RGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAM 514 (979)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--------------------------------
T ss_pred ECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence 99999999999999999999 68999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 487 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
+++..|+.++++|+..++... ..++|+++++++|+.|++|..+++++ ||+|++||++|++|++++.+..
T Consensus 515 ~~~~~g~~~~a~vv~~~~~~~-----~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 584 (979)
T 3tsy_A 515 KEEAAGEVPVAFVVKSKDSEL-----SEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL 584 (979)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCcEEEEEEEECCCCCC-----CHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence 998889999999987765443 56789999999999999999988777 9999999999999999987644
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-74 Score=600.33 Aligned_cols=480 Identities=25% Similarity=0.342 Sum_probs=382.5
Q ss_pred cccccccCHHHHHHHhhhhCCC-ceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhh
Q 008342 14 SANYTALTPLWFINRAATLHPT-RKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPM 92 (569)
Q Consensus 14 ~~~~~~~~l~~~l~~~a~~~p~-~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 92 (569)
+...+-+|+.++|+++++++|+ ++|+++.++++||+||.++++++|++|. .|++|+++++|++++++++|||++
T Consensus 16 ~~~~~~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~ 90 (505)
T 3nyq_A 16 PRGSHMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALL 90 (505)
T ss_dssp --------CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHH
T ss_pred cCCcccchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 3334456789999999999998 9999999999999999999999999875 388999999999999999999999
Q ss_pred cCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcch
Q 008342 93 AGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGA 172 (569)
Q Consensus 93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (569)
+|++++|+++.++.+++.+++++++++++|++.+.... ... .....+.+...
T Consensus 91 ~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-----~~~--------~~~~~~~~~~~--------------- 142 (505)
T 3nyq_A 91 AGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-----PAL--------GALERVDVDVR--------------- 142 (505)
T ss_dssp HTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-----GGG--------TTSEEEECCTT---------------
T ss_pred hCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-----hhh--------ccccccccccc---------------
Confidence 99999999999999999999999999999998652100 000 01111111110
Q ss_pred hhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHH
Q 008342 173 IEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS 252 (569)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~ 252 (569)
...........++++++|+|||||||.||+|+++|+++..........+++.++|++++.+|++|..|+.
T Consensus 143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 212 (505)
T 3nyq_A 143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLV 212 (505)
T ss_dssp ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHT
T ss_pred ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHH
Confidence 0011112335678999999999999999999999999999999888899999999999999999999986
Q ss_pred H-HHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCC--CCCCcccceeeeecCCCCCHHHHHH
Q 008342 253 Y-TWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED--TILPLTNVVNVNTAGAPPPPSLLFA 329 (569)
Q Consensus 253 ~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--~~~~l~~l~~~~~~g~~l~~~~~~~ 329 (569)
. .+.++..|+++++...+++..+++.+ ++++|+++++|+++..+.+..... ....++++|.+++||+++++++.++
T Consensus 213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~ 291 (505)
T 3nyq_A 213 LGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHER 291 (505)
T ss_dssp TTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHH
T ss_pred HHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHH
Confidence 4 55666778888888889999999999 889999999999999998743221 1112678999999999999999999
Q ss_pred hhhc-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCC-CCCceEEEEE
Q 008342 330 MSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPA-DGKTIGEIVM 407 (569)
Q Consensus 330 ~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~-~~~~~Gel~v 407 (569)
+.+. ++++++.||+||+++.++..... .....++|.|++++ +++|+|++ +++++. ++++.|||++
T Consensus 292 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~~~~g~~GEl~v 358 (505)
T 3nyq_A 292 IAAATGRRVIERYGMTETLMNTSVRADG-----------EPRAGTVGVPLPGV-ELRLVEED-GTPIAALDGESVGEIQV 358 (505)
T ss_dssp HHHHHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEE
T ss_pred HHHhcCCeeecccchhhcccccccCCCC-----------CCCCCCcccCCCCC-EEEEECCC-CCCcccCCCCceEEEEE
Confidence 9854 99999999999998655433211 12336899999999 69999987 888875 2237899999
Q ss_pred ecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEeccc-CceEEeCceeechHHHHHHHhcCCCceeeEEEe
Q 008342 408 RGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRL-KDVIISGGENISSVEVEKVLYLHPLVLEAAVVA 485 (569)
Q Consensus 408 ~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 485 (569)
+|++++.||+++++.+...| .+|||+|||+|++++||+++++||. ||+||++|++|+|.+||++|.++|+|.+++|++
T Consensus 359 ~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~ 438 (505)
T 3nyq_A 359 RGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTG 438 (505)
T ss_dssp ESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred ecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEe
Confidence 99999999999999999999 4899999999999999999999998 599999999999999999999999999999999
Q ss_pred ecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHH
Q 008342 486 RPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 554 (569)
Q Consensus 486 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (569)
.+++..|+.+++++++.++.... ..++|+++|+++|+.|++|..+.+++ ||+|++||++|++|++
T Consensus 439 ~~~~~~g~~l~a~vv~~~~~~~~----~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 439 EPDPDLGERIVAWIVPADPAAPP----ALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEETTTEEEEEEEEEESSTTSCC----CHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred eECCCCCcEEEEEEEECCCCCCC----CHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 99999899999999987643221 56789999999999999999999877 9999999999999986
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-73 Score=604.06 Aligned_cols=507 Identities=19% Similarity=0.212 Sum_probs=316.3
Q ss_pred ccccccccccccCHHHHHHHhhhhCCCceeeeeCC----------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Q 008342 9 DLPKISANYTALTPLWFINRAATLHPTRKSVVYGS----------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAP 78 (569)
Q Consensus 9 ~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~----------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~ 78 (569)
........++++|+.++|+++|+++|+++|+++.+ +++||+||.++++++|++|.+.|+ +||+|+++++
T Consensus 9 ~~~~~~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~ 87 (562)
T 3ite_A 9 SSKVSAQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLD 87 (562)
T ss_dssp ---------CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECC
T ss_pred ccccceeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeC
Confidence 33445556778999999999999999999998753 789999999999999999999999 7999999999
Q ss_pred CchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCC
Q 008342 79 NVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDES 158 (569)
Q Consensus 79 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 158 (569)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+...... .. ....++....
T Consensus 88 n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----~~-------~~~~~~~~~~-- 153 (562)
T 3ite_A 88 RSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----LP-------PETKVLDTKN-- 153 (562)
T ss_dssp SCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----CC-------TTCEEEETTC--
T ss_pred CCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----cC-------ccceeecccc--
Confidence 999999999999999999999999999999999999999999999876432110 00 1111211111
Q ss_pred cchhhhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH--------
Q 008342 159 CDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI-------- 230 (569)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~-------- 230 (569)
..+.+.+....... ......++++++|+|||||||.||+|++||+++..........
T Consensus 154 --------------~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~ 218 (562)
T 3ite_A 154 --------------QSFIENLSTQDTSD-ILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKS 218 (562)
T ss_dssp --------------HHHHHHHHHSCCSC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGG
T ss_pred --------------hhhhhhcccccccc-cccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchh
Confidence 12222232222221 1123456788999999999999999999999998877654433
Q ss_pred hCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEeccCC-hHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCc
Q 008342 231 WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVT-AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPL 309 (569)
Q Consensus 231 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l 309 (569)
+.+...+++++..|++|..++...+..+..|++.++...+. +..+++.++++++|++.++|++++.+..... . +
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~~----~-~ 293 (562)
T 3ite_A 219 LELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPE----D-A 293 (562)
T ss_dssp GGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCGG----G-S
T ss_pred cccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCcc----c-c
Confidence 45778899999999999888887777888888887765543 5778999999999999999999888754332 2 7
Q ss_pred ccceeeeecCCCCCHHHHHHhhhc-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeee
Q 008342 310 TNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVID 388 (569)
Q Consensus 310 ~~l~~~~~~g~~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d 388 (569)
+++|.+++||+++++++.+++.+. ++++++.||+||+++.++.....+. ....++|.|++++ +++|+|
T Consensus 294 ~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~----------~~~~~~G~p~~~~-~~~i~d 362 (562)
T 3ite_A 294 PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD----------SDTRCIGHPLGDS-VAHVLA 362 (562)
T ss_dssp TTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTT----------SCTTEEEEECTTC-EEEEEC
T ss_pred CceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCC----------CCCccccccCCCC-eEEEEe
Confidence 899999999999999999999865 8999999999999877665443221 1236789999999 699999
Q ss_pred CCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcCC--eeecCceeEEcCCCeEEEecccCceEEeCceeechH
Q 008342 389 ARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSV 466 (569)
Q Consensus 389 ~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g--~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~ 466 (569)
++++++++.| +.|||+++|++++.|||++++.+...+.+| ||+|||+|++++||++++.||.||+||++|++|+|.
T Consensus 363 ~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~ 440 (562)
T 3ite_A 363 PGSNEHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELG 440 (562)
T ss_dssp TTSSCBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC--------------
T ss_pred CCCCCCCCCC--CceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHH
Confidence 9889999988 789999999999999999999888777777 999999999999999999999999999999999999
Q ss_pred HHHHHHhcC-CCceeeEEEeecCCCCCceeeEEEEecCCcchh--------hhhhHHHHHHHHHHhcCCCCcCCceEEec
Q 008342 467 EVEKVLYLH-PLVLEAAVVARPDERWGESPCAFVTLKPEADEL--------DKGKLAEDVSKFCRAKMPSYWVPKSVVFA 537 (569)
Q Consensus 467 ~iE~~l~~~-~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~--------~~~~~~~~l~~~~~~~l~~~~~p~~i~~~ 537 (569)
|||++|.++ +.+.+++|++.+++..++..++.++...+.... +.....++|+++|+++|+.|++|..+.++
T Consensus 441 eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v 520 (562)
T 3ite_A 441 EVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPI 520 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEe
Confidence 999999998 778889999888888777766666554432211 11123468999999999999999999987
Q ss_pred c-CCCC-CCCcccHHHHHHHHHhcCCcc
Q 008342 538 A-LPKS-ATGKIQKHLLRAKAKEMGPVK 563 (569)
Q Consensus 538 ~-lP~t-~~GKi~r~~l~~~~~~~~~~~ 563 (569)
+ ||+| ++||++|++|++++.+....+
T Consensus 521 ~~lP~t~~~GKi~r~~L~~~~~~~~~~~ 548 (562)
T 3ite_A 521 SFIPLRDTSAKTDAKALEHMFHTLSLGE 548 (562)
T ss_dssp ----------------------------
T ss_pred ccCCCCCCCCcchHHHHHHHHhccCHHH
Confidence 7 9998 999999999999998766543
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-72 Score=598.60 Aligned_cols=513 Identities=18% Similarity=0.173 Sum_probs=409.8
Q ss_pred ccccccccccCHHHHHHHhhhhCCCceeeeeC----CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHH
Q 008342 11 PKISANYTALTPLWFINRAATLHPTRKSVVYG----SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEA 86 (569)
Q Consensus 11 ~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~----~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~ 86 (569)
|......+++|+.++|+++++++|+++|+++. ++++||+||.++++++|++|.++|+++||+|+++++|+++++++
T Consensus 2 s~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~ 81 (590)
T 3kxw_A 2 SLKKEYLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQA 81 (590)
T ss_dssp CCSHHHHTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CcchhhcCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHH
Confidence 45556678899999999999999999999874 48999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCceEeeccccCC---HHHHHHHHhcCCceEEEEcccchHHHHHHH-HHHhhhcCCCCCcCeEEEecCCCcchh
Q 008342 87 QFGAPMAGAVLNSINIRLN---ATVVAFILSHASSAVVIVDQEFFSLAEEAL-KMMEANSEGKLKTPHLIVIGDESCDSK 162 (569)
Q Consensus 87 ~lA~~~~G~~~v~l~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~ 162 (569)
+|||+++|++++|+++.++ .+++.++++.+++++++++.+....+.... ...+ ....+..+..
T Consensus 82 ~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~------ 148 (590)
T 3kxw_A 82 FLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNP-------KFLKIPAIAL------ 148 (590)
T ss_dssp HHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CC-------EETTEEEEEG------
T ss_pred HHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcc-------cccccceeec------
Confidence 9999999999999999884 578999999999999999877554432211 1110 0111111110
Q ss_pred hhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEc
Q 008342 163 QLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWT 242 (569)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~ 242 (569)
+.+.... ..........++++++|+|||||||.||+|++||+++..........+++.++|++++.
T Consensus 149 -------------~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~ 214 (590)
T 3kxw_A 149 -------------ESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSW 214 (590)
T ss_dssp -------------GGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred -------------hhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEe
Confidence 0100000 01111123567899999999999999999999999999999998889999999999999
Q ss_pred CCccchhhHHH-HHHHHHhcceEEEeccC----ChHHHHHHHHhcCccEEeehHHHHHHHHccCCC---CCCCCccccee
Q 008342 243 LPMFHGNGWSY-TWSLAALCGTSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAIANASPE---DTILPLTNVVN 314 (569)
Q Consensus 243 ~p~~~~~g~~~-~~~~~~~g~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~---~~~~~l~~l~~ 314 (569)
+|++|.+|+.. .+.++..|+++++.+.+ ++..+++.|+++++|++.++|+++..+.+.... .... ++++|.
T Consensus 215 ~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~-l~~lr~ 293 (590)
T 3kxw_A 215 LPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLD-LSSWVT 293 (590)
T ss_dssp SCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCC-CTTCCE
T ss_pred cCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCC-chhhHH
Confidence 99999999877 44555556666666554 789999999999999999999999998875322 2223 889999
Q ss_pred eeecCCCCCHHHHHHhhhc-------CCeEecccccccCCCCccccccCCCCCCC----------------Cchhhhhcc
Q 008342 315 VNTAGAPPPPSLLFAMSQK-------GFRITHTYGLTELTGPASVCAWKPEWDSL----------------PFETQARLN 371 (569)
Q Consensus 315 ~~~~g~~l~~~~~~~~~~~-------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~----------------~~~~~~~~~ 371 (569)
+++||+++++++.+++.+. +.++++.||+||++++++.+.....+... .........
T Consensus 294 ~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (590)
T 3kxw_A 294 AFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKL 373 (590)
T ss_dssp EEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEE
T ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceE
Confidence 9999999999999988743 34799999999999877654332111000 001122345
Q ss_pred ccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcC-------C--eeecCceeEEcC
Q 008342 372 ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN-------G--WFHSGDLAVKHP 442 (569)
Q Consensus 372 ~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------g--~~~tGD~~~~~~ 442 (569)
.++|.|+++ ++|+|++++++++.| +.|||+|+|++++.|||++++.+.+.|.+ | ||+|||+|+++
T Consensus 374 ~~~G~p~~~---v~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d- 447 (590)
T 3kxw_A 374 VSSGNPIQE---VKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH- 447 (590)
T ss_dssp ECCCEESSE---EEEECTTTCCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-
T ss_pred eccCCCCCC---eEEEcCCCCcCCCCC--CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-
Confidence 788998886 788999889999988 88999999999999999999999999953 5 99999999999
Q ss_pred CCeEEEecccCceEEeCceeechHHHHHHH-hcCCCce--eeEEEeecCCCCCceeeEEEEecCCcc-hhhhhhHHHHHH
Q 008342 443 DNYIEIKDRLKDVIISGGENISSVEVEKVL-YLHPLVL--EAAVVARPDERWGESPCAFVTLKPEAD-ELDKGKLAEDVS 518 (569)
Q Consensus 443 ~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l-~~~~~v~--~~~v~~~~~~~~g~~~~~~v~~~~~~~-~~~~~~~~~~l~ 518 (569)
+|.++++||.||+||++|++|+|.+||++| ..+|.|. +|+|++.+++. ++.+++++++.++.. .. ..+++.
T Consensus 448 dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~----~~~~l~ 522 (590)
T 3kxw_A 448 ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDV----AQDNLF 522 (590)
T ss_dssp TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHH----HHHHHH
T ss_pred CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccch----hHHHHH
Confidence 999999999999999999999999999999 7888998 89999988776 678888888877642 21 456777
Q ss_pred HHHHhcCCC-CcCCc-eEEec--c-CCCCCCCcccHHHHHHHHHhcCCc
Q 008342 519 KFCRAKMPS-YWVPK-SVVFA--A-LPKSATGKIQKHLLRAKAKEMGPV 562 (569)
Q Consensus 519 ~~~~~~l~~-~~~p~-~i~~~--~-lP~t~~GKi~r~~l~~~~~~~~~~ 562 (569)
++|++.++. +++|. .+.++ + ||+|++||++|++|++++.+....
T Consensus 523 ~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~ 571 (590)
T 3kxw_A 523 NEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLP 571 (590)
T ss_dssp HHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCCCc
Confidence 778777774 67775 44443 4 999999999999999999887653
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-71 Score=632.81 Aligned_cols=487 Identities=22% Similarity=0.290 Sum_probs=412.9
Q ss_pred ccccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcC
Q 008342 15 ANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94 (569)
Q Consensus 15 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 94 (569)
...+..++.++|+++++++|+++|+++.++++||+||+++++++|++|.+.|+++|++|+|++++++++++++|||+++|
T Consensus 459 ~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG 538 (1304)
T 2vsq_A 459 QAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAG 538 (1304)
T ss_dssp CCCCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHC
Confidence 34445799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhh
Q 008342 95 AVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIE 174 (569)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (569)
++++|++|.++.+++.++++++++++++++.+....... ++ .....+.+++.. .
T Consensus 539 ~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~-------~~~~~~~~~~~~---------------~ 592 (1304)
T 2vsq_A 539 AAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE----LP-------YTGTTLFIDDQT---------------R 592 (1304)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT----CC-------CCSEEEESSCGG---------------G
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc----cC-------CCCcEEEecccc---------------c
Confidence 999999999999999999999999999998765332110 00 112223222210 0
Q ss_pred HHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHH
Q 008342 175 YEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT 254 (569)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 254 (569)
+ .. ..........++++++|+|||||||.||||+++|+++.+. .+....+++.++|+++...|++|..+....
T Consensus 593 ---~-~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~ 665 (1304)
T 2vsq_A 593 ---F-EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDF 665 (1304)
T ss_dssp ---G-GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ---c-cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHH
Confidence 0 00 1111122356789999999999999999999999998865 445556788999999999999998888888
Q ss_pred HHHHHhcceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhh
Q 008342 255 WSLAALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS 331 (569)
Q Consensus 255 ~~~~~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~ 331 (569)
+.+++.|+++++.+. .++..+.+.|+++++|++.++|+++..+.+.... . ++++|.+++|||++++++.+++.
T Consensus 666 ~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~---~-~~~lr~~~~gGe~l~~~~~~~~~ 741 (1304)
T 2vsq_A 666 YASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED---W-MKGLRCILFGGERASVPHVRKAL 741 (1304)
T ss_dssp HHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH---H-HHTCSEEEEESSCCCHHHHHHHH
T ss_pred HHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh---c-CCCccEEEEecCCCCHHHHHHHH
Confidence 888888988888754 6899999999999999999999999999875321 2 68899999999999999999887
Q ss_pred hc--CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEec
Q 008342 332 QK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 409 (569)
Q Consensus 332 ~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~ 409 (569)
+. +++++|.||+||++..++.+..... .......++|.|++++ ++.|+|++ ++++|.| +.|||+|+|
T Consensus 742 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~~~i~d~~-~~~~p~G--~~GEl~i~G 810 (1304)
T 2vsq_A 742 RIMGPGKLINCYGPTEGTVFATAHVVHDL-------PDSISSLPIGKPISNA-SVYILNEQ-SQLQPFG--AVGELCISG 810 (1304)
T ss_dssp HHHCTTCEEEEECCGGGSSCSEEEECCCC-------CSSCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CCEEEEEEE
T ss_pred HhCCCCEEEEeEChhHHhHHheeeeccCc-------cccCCCCCCceeeCCC-EEEEECCC-cCCCCCC--CceEEEEec
Confidence 54 5799999999999987765532210 0111236799999999 69999987 8999988 899999999
Q ss_pred CcccccccCCcchhhhhhc-------CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeE
Q 008342 410 SCVMKGYLKNPKANEEAFA-------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 482 (569)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~~-------~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 482 (569)
+++++||+++++.+.++|. ++||+|||+|++++||.++++||.||+||++|++|.|.|||++|.++|+|.+++
T Consensus 811 ~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~ 890 (1304)
T 2vsq_A 811 MGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAV 890 (1304)
T ss_dssp TTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEE
T ss_pred cccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEE
Confidence 9999999999999999983 349999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHH
Q 008342 483 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA 556 (569)
Q Consensus 483 v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (569)
|++.+++..++.+++|++..... ..++|+++++++||.|++|..+++.+ ||+|++||++|++|++..
T Consensus 891 V~~~~~~~~~~~l~a~vv~~~~~-------~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 891 VVADRHESGDASINAYLVNRTQL-------SAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp EEEECCSSSCCEEEEEEECSSSS-------CHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCC
T ss_pred EEEEecCCCCEEEEEEEeCCCCC-------CHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcc
Confidence 99998888888999999876532 34789999999999999999999777 999999999999997644
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-58 Score=479.77 Aligned_cols=407 Identities=19% Similarity=0.216 Sum_probs=312.4
Q ss_pred cccccccccccCHHHHHHHhhhhCCCceeeeeCC---------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCc
Q 008342 10 LPKISANYTALTPLWFINRAATLHPTRKSVVYGS---------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNV 80 (569)
Q Consensus 10 ~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~ 80 (569)
.......++++|+.++|+++++++|+++|+++.+ +++||+||.++++++|++|.+.|+ +||+|+++++|+
T Consensus 14 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~ 92 (480)
T 3t5a_A 14 LVPRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92 (480)
T ss_dssp ----------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSS
T ss_pred CCcccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCc
Confidence 3444556778999999999999999999999865 899999999999999999999996 999999999999
Q ss_pred hhHHHHHHHhhhcCceEeeccc---cCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCC
Q 008342 81 PAMYEAQFGAPMAGAVLNSINI---RLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDE 157 (569)
Q Consensus 81 ~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 157 (569)
+++++++|||+++|++++|+++ .++.+++.+++++++++++|++.+....+......... .....++.++..
T Consensus 93 ~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 167 (480)
T 3t5a_A 93 LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPG-----ESPPSIIEVDLL 167 (480)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-----------CCEEEEGGGS
T ss_pred HHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhcccc-----ccccceeEeccc
Confidence 9999999999999999999999 78899999999999999999998876655443221110 011223332211
Q ss_pred CcchhhhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCC--
Q 008342 158 SCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNE-- 235 (569)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~-- 235 (569)
. .............++++++|+|||||||.||+|++||+++..........+++..
T Consensus 168 ~----------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~ 225 (480)
T 3t5a_A 168 D----------------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDG 225 (480)
T ss_dssp C----------------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTT
T ss_pred c----------------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhcccccc
Confidence 1 0111111223356789999999999999999999999999999888888888877
Q ss_pred ----CcEEEEcCCccchhhHHH-HHHHHHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccC----C
Q 008342 236 ----GAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANAS----P 302 (569)
Q Consensus 236 ----~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~----~ 302 (569)
+|++++.+|++|.+|+.. .+.+++.|+++++.+. +++..+++.++++++| +.++|+++..++... .
T Consensus 226 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~ 304 (480)
T 3t5a_A 226 IPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDD 304 (480)
T ss_dssp CCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGG
T ss_pred CCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccc
Confidence 999999999999999765 4555666777777654 3899999999999999 888999888777542 1
Q ss_pred CCCCCCcccceeeeecCCCCCHHHHHHhhhc-------CCeEecccccccCCCCccccccCCCCCCCCch----------
Q 008342 303 EDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-------GFRITHTYGLTELTGPASVCAWKPEWDSLPFE---------- 365 (569)
Q Consensus 303 ~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~-------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~---------- 365 (569)
..... +++||.+++||+++++++.+++.+. ++++++.||+||+++.++..............
T Consensus 305 ~~~~~-l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 383 (480)
T 3t5a_A 305 MAGRD-LGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAK 383 (480)
T ss_dssp GTTCC-CTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCC
T ss_pred ccccc-hhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCcee
Confidence 12233 8999999999999999999999743 24799999999999776655432211000000
Q ss_pred ----hhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhh------------cC
Q 008342 366 ----TQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF------------AN 429 (569)
Q Consensus 366 ----~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~------------~~ 429 (569)
.......++|.|++ + +++|+|++++++++.| +.|||+|+|++++.|||++++.+.+.| .+
T Consensus 384 ~~~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~ 459 (480)
T 3t5a_A 384 PCAGGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEG 459 (480)
T ss_dssp CCCSSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCC
T ss_pred ecCCCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCC
Confidence 00234468999999 8 6999999989999988 899999999999999999999999999 35
Q ss_pred CeeecCceeEEcCCCeEEEecc
Q 008342 430 GWFHSGDLAVKHPDNYIEIKDR 451 (569)
Q Consensus 430 g~~~tGD~~~~~~~g~l~~~GR 451 (569)
|||+|||+|+++ ||+|+|+||
T Consensus 460 ~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 460 PWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CBEEEEEEEEEE-TTEEEECC-
T ss_pred CeeeccceeeEE-CCEEEEeCC
Confidence 699999999997 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-53 Score=417.14 Aligned_cols=315 Identities=19% Similarity=0.188 Sum_probs=263.8
Q ss_pred CceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEeccCChHH
Q 008342 195 WQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKA 274 (569)
Q Consensus 195 ~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~ 274 (569)
+++++|+|||||||.||+|++||+++.+.+......++++++|++++.+|++|.+|+...+..++.|+++++.... ..
T Consensus 37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~~ 114 (358)
T 4gs5_A 37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--AN 114 (358)
T ss_dssp TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--SC
T ss_pred CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--cc
Confidence 6899999999999999999999999999999988999999999999999999999999888888889988887532 23
Q ss_pred HHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCCeEecccccccCCCCccccc
Q 008342 275 VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCA 354 (569)
Q Consensus 275 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~ 354 (569)
.++.|+++++|++.++|+++..|++...... . ++++|.+++||+++++++.+++++.++++++.||+||+++.++...
T Consensus 115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~-~-l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~ 192 (358)
T 4gs5_A 115 PLAGLDHADFDFVAMVPMQLQSILENSATSG-Q-VDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKA 192 (358)
T ss_dssp TTTTCSSCCCSEEEECHHHHHHHHHCTTTGG-G-GGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEE
T ss_pred HHHHHHHhCCeEEEcChHHHHHhhccccccc-c-CCcceEEEEcccCCCchheecccccCceEEeccccccccceeeccc
Confidence 4677899999999999999999998765332 3 8999999999999999999999999999999999999987665543
Q ss_pred cCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeec
Q 008342 355 WKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHS 434 (569)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~t 434 (569)
... ...+.+|.+.|++ .+.+. +.||++++|+.. .+|||+|
T Consensus 193 ~~~-----------~~~g~~~~~~pgv-~~~~~-------------~~Gel~~~g~~~---------------~~g~~~T 232 (358)
T 4gs5_A 193 LNG-----------PEASELYVFLPGI-QYGVD-------------ERGCLHISGAVT---------------NGQTVQT 232 (358)
T ss_dssp CSS-----------TTCCSCEEECTTC-EEEEC-------------TTSEEEEESGGG---------------TTCCEEE
T ss_pred ccc-----------cccceeeccCCCe-EEEec-------------CcCceEEecccc---------------cCcceec
Confidence 221 1225677777766 23331 349999988632 3689999
Q ss_pred CceeEEcCCCeEEEecccCceEEeCceeechHHHHHHH---hcCCCceeeEEE-eecCCCCCceeeEEEEecCCcchhhh
Q 008342 435 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL---YLHPLVLEAAVV-ARPDERWGESPCAFVTLKPEADELDK 510 (569)
Q Consensus 435 GD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l---~~~~~v~~~~v~-~~~~~~~g~~~~~~v~~~~~~~~~~~ 510 (569)
||+|+++++| ++++||.||+||++|++|+|.+||++| .+||.|.+++|+ +.+++..|+.++++++..... .
T Consensus 233 GDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~-~--- 307 (358)
T 4gs5_A 233 NDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE-A--- 307 (358)
T ss_dssp EEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH-H---
T ss_pred CCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCC-c---
Confidence 9999999888 667799999999999999999999877 467999998876 667888889888888755432 2
Q ss_pred hhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 511 GKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 511 ~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
..++|+++|+++|+.|++|+.+++++ ||+|++||++|++|++++.+..
T Consensus 308 --~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 308 --LTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp --HHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred --CHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence 55789999999999999999999877 9999999999999999887654
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=391.67 Aligned_cols=329 Identities=21% Similarity=0.225 Sum_probs=258.1
Q ss_pred CCc-CceEEEEeccCCCCCCcceeecchHHHHHHHHhH---hHhCCCCCcEEEEcCCccchhhHH-HHHHHHHhcceEEE
Q 008342 192 EDE-WQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA---LIWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSIC 266 (569)
Q Consensus 192 ~~~-~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~~~~g~~~~~ 266 (569)
..+ +++++++|||||||.||+|.+||+++........ ..+++.++|+++...|+.|..+.. ..+.+...|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 345 8899999999999999999999999877665553 345899999999999987655554 44555666777777
Q ss_pred eccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCC-CcccceeeeecCCCCCHHHHHHhhhc-CCeEecccccc
Q 008342 267 LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLT 344 (569)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~l~~~~~~g~~l~~~~~~~~~~~-~~~i~~~YG~t 344 (569)
.+.+++..+++.|+++++|++.++|+++..|++........ .++++|.+++||+++++++.+++.+. |+++++.||+|
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 241 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMT 241 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEG
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcch
Confidence 67789999999999999999999999999998764322221 26899999999999999999999865 99999999999
Q ss_pred cCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhh
Q 008342 345 ELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424 (569)
Q Consensus 345 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~ 424 (569)
|+++.++...... ....|.+.+++ .++|+|++++++++.| +.|||+++|.. .
T Consensus 242 E~~~~~~~~~~~~-------------~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~~------------~ 293 (436)
T 3qov_A 242 EMNGPGVAFECQE-------------QNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTLD------------R 293 (436)
T ss_dssp GGTEEEEEEECTT-------------CSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEESS------------C
T ss_pred hhcCCeeEEecCC-------------CCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEeccC------------c
Confidence 9965432221100 02244555677 6999998889999988 78999999842 2
Q ss_pred hhhcCCeeecCceeEEcCCC------e---EEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCcee
Q 008342 425 EAFANGWFHSGDLAVKHPDN------Y---IEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 495 (569)
Q Consensus 425 ~~~~~g~~~tGD~~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~ 495 (569)
..|..+||+|||+|+++++| + +++.||.||+|+++|.+|+|.+||++|.++|.|.+++|++.+++..++.+
T Consensus 294 ~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l 373 (436)
T 3qov_A 294 EMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEM 373 (436)
T ss_dssp CSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEE
T ss_pred CCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEE
Confidence 34568899999999999998 5 69999999999999999999999999999999999999999888878899
Q ss_pred eEEEEecCCcchhhhhhHHHHHHHHHHhcCCCC-cCCceEEecc---CCCCCCCcccHHH
Q 008342 496 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFAA---LPKSATGKIQKHL 551 (569)
Q Consensus 496 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~~i~~~~---lP~t~~GKi~r~~ 551 (569)
+++|++. +... +.....+++.+++++.|+.+ .+|..+.+++ ||+|+ ||++|..
T Consensus 374 ~a~v~~~-~~~~-~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 374 IVEVELS-DLST-DNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEC-TTCC-CCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred EEEEEEc-Cccc-cchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 9999988 4322 11123567777787777777 8888887654 99999 9999853
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=390.47 Aligned_cols=330 Identities=17% Similarity=0.197 Sum_probs=265.4
Q ss_pred CCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhH---hHhCCCCCcEEEEcCCc-cchhhHHHHHHHHHhcceEEEe
Q 008342 192 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA---LIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAALCGTSICL 267 (569)
Q Consensus 192 ~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 267 (569)
..++++++++|||||||.||+|.+||+++........ ..+++.++|+++..+|+ +|..++...+.+...|++++..
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4678899999999999999999999999877654433 35788999999999998 5777776667777778887777
Q ss_pred ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCC-CcccceeeeecCCCCCHHHHHHhhhc-CCeEeccccccc
Q 008342 268 RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTE 345 (569)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~l~~~~~~g~~l~~~~~~~~~~~-~~~i~~~YG~tE 345 (569)
+.+++..+++.|+++++|++.++|+++..|++........ .++++|.+++||+++++++.+++.+. |+++++.||+||
T Consensus 169 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 248 (443)
T 2y4o_A 169 SGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE 248 (443)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchh
Confidence 7789999999999999999999999999998764322221 15789999999999999999999854 999999999999
Q ss_pred CCCC--ccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchh
Q 008342 346 LTGP--ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 423 (569)
Q Consensus 346 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~ 423 (569)
+++. +..|... ....+.+.+++ .++|+|++++++++.| +.|||+++|. +
T Consensus 249 ~~g~~~~~~~~~~--------------~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~------------t 299 (443)
T 2y4o_A 249 VMGPGVACECVET--------------KDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL------------T 299 (443)
T ss_dssp TTEEEEEEECTTT--------------CCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------S
T ss_pred hcCCeEEeccCCC--------------CCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC------------C
Confidence 8543 2222100 00133344566 6999998889999988 7899999983 2
Q ss_pred hhhhcCCeeecCceeEEcCC-CeE-----EEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeE
Q 008342 424 EEAFANGWFHSGDLAVKHPD-NYI-----EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497 (569)
Q Consensus 424 ~~~~~~g~~~tGD~~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~ 497 (569)
...|..+||+|||+|+++++ |++ ++.||.||+|+++|.+|+|.+||++|.++|+|.+++|++.+++..++.+.+
T Consensus 300 ~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a 379 (443)
T 2y4o_A 300 KEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDL 379 (443)
T ss_dssp CSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEE
T ss_pred cccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEE
Confidence 23456789999999999999 986 899999999999999999999999999999999999988877766788999
Q ss_pred EEEecC--CcchhhhhhHHHHHHHHHHhcCCCC-cCCceEEec---cCCCCCCCcccHHHH
Q 008342 498 FVTLKP--EADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFA---ALPKSATGKIQKHLL 552 (569)
Q Consensus 498 ~v~~~~--~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~~i~~~---~lP~t~~GKi~r~~l 552 (569)
+|++.+ +... .....+++.++|+++|+.+ .+|..+.++ +||+|++||++|+..
T Consensus 380 ~v~~~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~ 438 (443)
T 2y4o_A 380 AVELRSEAAASV--TDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVID 438 (443)
T ss_dssp EEEECHHHHTTC--CHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred EEEECCcccccc--hhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence 998765 2100 0114567888888888876 588877765 399999999999754
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-47 Score=389.23 Aligned_cols=328 Identities=18% Similarity=0.162 Sum_probs=266.4
Q ss_pred CCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhH---hHhCCCCCcEEEEcCCc-cchhhHHHHHHHHHhcceEEEe
Q 008342 192 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA---LIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAALCGTSICL 267 (569)
Q Consensus 192 ~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 267 (569)
..++++++++|||||||.||+|++||+++........ ..+++.++|+++..+|+ +|..++...+.+...|++++..
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 4678999999999999999999999999877654433 35788999999999998 6777777767777778887777
Q ss_pred ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCC-CcccceeeeecCCCCCHHHHHHhhh-cCCeEeccccccc
Q 008342 268 RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTE 345 (569)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~l~~~~~~g~~l~~~~~~~~~~-~~~~i~~~YG~tE 345 (569)
+.+++..+++.|+++++|++.++|+++..|++........ .++++|.+++||+++++++.+++.+ +|+++++.||+||
T Consensus 167 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 246 (437)
T 2y27_A 167 GGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE 246 (437)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchh
Confidence 7789999999999999999999999999998764322221 1478999999999999999999985 4999999999999
Q ss_pred CCCC--ccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchh
Q 008342 346 LTGP--ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 423 (569)
Q Consensus 346 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~ 423 (569)
+++. +..|... ....+.+.+++ .++|+|++++++++.| +.|||+++|. +
T Consensus 247 ~~g~~~~~~~~~~--------------~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t 297 (437)
T 2y27_A 247 VMGPGVASECVET--------------KDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL------------T 297 (437)
T ss_dssp TTEEEEEECCTTT--------------CSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------S
T ss_pred hcCCeeEEecCCC--------------CCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC------------C
Confidence 8432 2222110 01234455667 6999998889999988 7899999983 2
Q ss_pred hhhhcCCeeecCceeEEcC-CCeE-----EEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeE
Q 008342 424 EEAFANGWFHSGDLAVKHP-DNYI-----EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497 (569)
Q Consensus 424 ~~~~~~g~~~tGD~~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~ 497 (569)
...|.++||+|||+|++++ +|++ ++.||.||+|+++|.+|+|.+||++|.+||.|.+++|++.+++..++.+++
T Consensus 298 ~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a 377 (437)
T 2y27_A 298 KEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTL 377 (437)
T ss_dssp CSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEE
T ss_pred cCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEE
Confidence 2345678999999999998 6985 899999999999999999999999999999999999988877777788999
Q ss_pred EEEecCCcchhhhhhHHHHHHHHHHhcCCCC-cCCceEEec---cCCCCCCCcccHHH
Q 008342 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFA---ALPKSATGKIQKHL 551 (569)
Q Consensus 498 ~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~~i~~~---~lP~t~~GKi~r~~ 551 (569)
+|++.++... .....+++.++|+++|+.+ .+|..+.++ +||+|+ ||++|+.
T Consensus 378 ~v~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 378 NVEPCPETAP--DTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EECBCTTTTT--CHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEECCCccc--hhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9988765421 0114577888899989887 588887776 399999 9999864
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-30 Score=256.35 Aligned_cols=235 Identities=15% Similarity=0.110 Sum_probs=177.9
Q ss_pred CCcCceEEEEeccCCCCCCcceeecchHHHHHHHHh---HhHhCCCCCcEEEEcCCc-cchhhHHHHHHHHHhcceEEEe
Q 008342 192 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNG---ALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAALCGTSICL 267 (569)
Q Consensus 192 ~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~---~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 267 (569)
..++++++++|||||||.||+|.++|+++.....+. ...+++.++|++++.+|+ +|..|+...+.+...|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 367788999999999999999999999998887743 345678899999999999 99999988777766676 6666
Q ss_pred ccCChH-----------------------HHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCH
Q 008342 268 RQVTAK-----------------------AVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPP 324 (569)
Q Consensus 268 ~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~ 324 (569)
..+++. .+++.|+++++|++.++|+++..|++........ ++++|.+++||+++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQM-KQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHH-HHHCSEEEEESSCCCH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccc-cCCeeEEEECCccCCH
Confidence 667777 8888999999999999999999998763322122 6889999999999999
Q ss_pred HHHHHhh-hc--CCeEecccccccCCCCccccccCCCCCCCCchhhhhccc-cCCce------eeccCCceeeeCCCCcc
Q 008342 325 SLLFAMS-QK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA-RQGVR------TICLDGLDVIDARTNQP 394 (569)
Q Consensus 325 ~~~~~~~-~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~------~~~~~~~~i~d~~~~~~ 394 (569)
++.+++. +. ++++++.||+||+++++..+. . ++|.+ .+++ .++|+|++++++
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~-----------------~~~~G~~~~~~~~~~~~-~v~ivD~~~g~~ 307 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLL-----------------ITSESQQVIYDSFSPFI-TYDVVDSITAQT 307 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC-----------------BCTTCSSCEEECCTTTE-EEEEECTTTCSB
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceeccc-----------------cccCCCcccccCCCCCe-EEEEECCCCCcC
Confidence 9999998 66 899999999999986554332 2 47888 8888 699999978999
Q ss_pred cCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCC--C-------eEEEecccCceEEeCce
Q 008342 395 VPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD--N-------YIEIKDRLKDVIISGGE 461 (569)
Q Consensus 395 ~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~--g-------~l~~~GR~~d~i~~~G~ 461 (569)
+|.| +.|||+|++..... + --+|+|||++...+. | .+..++|.++..++.|.
T Consensus 308 vp~G--~~GEl~vt~l~~~~------------~-l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 308 VEYG--ERGNVIVTHLSPWA------------F-YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp CCTT--CEEEEEEEEEETTE------------E-EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CCCC--CceEEEEEEcCccc------------c-cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9988 89999999853211 1 123899999987653 2 35567777777776664
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-14 Score=115.04 Aligned_cols=96 Identities=20% Similarity=0.258 Sum_probs=71.7
Q ss_pred cccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchh--hhhhHHHHHHHHHHhcCCC
Q 008342 450 DRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADEL--DKGKLAEDVSKFCRAKMPS 527 (569)
Q Consensus 450 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~--~~~~~~~~l~~~~~~~l~~ 527 (569)
.|.||+|+++|.+++|.+||++|.+||+|.++++++.+++.+++.+.++++..++.... ......+++.+.+++.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~-- 78 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI-- 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHh--
Confidence 48999999999999999999999999999999999999999899999999888764332 12234455555555544
Q ss_pred CcCCceEEecc---CCCCCCCcccH
Q 008342 528 YWVPKSVVFAA---LPKSATGKIQK 549 (569)
Q Consensus 528 ~~~p~~i~~~~---lP~t~~GKi~r 549 (569)
.++..+.+++ ||+| +||++|
T Consensus 79 -gv~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 79 -LVTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp -SSCCEEEEECTTCSCCC----CCC
T ss_pred -CCccceEEEcCCeecCC-CCCcch
Confidence 2444455542 9998 699987
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-07 Score=96.54 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=62.4
Q ss_pred ceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcC----CCeEEEecccCceEEeCceeechHHHHHHHhcC-
Q 008342 401 TIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP----DNYIEIKDRLKDVIISGGENISSVEVEKVLYLH- 475 (569)
Q Consensus 401 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~- 475 (569)
+.+||++|... |+|+ |++||+++++. .+.+.|.||.+|++.+.|+++++.+||++|.+.
T Consensus 397 ~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~ 460 (609)
T 4b2g_A 397 KEYELVITTYA---GLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNAS 460 (609)
T ss_dssp CEEEEEEECTT---SCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHH
T ss_pred CeEEEehhhhh---hhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHH
Confidence 78999998753 5664 99999999973 468999999999999999999999999998732
Q ss_pred -----C--CceeeEEEeecCCCCCceeeEEEEec
Q 008342 476 -----P--LVLEAAVVARPDERWGESPCAFVTLK 502 (569)
Q Consensus 476 -----~--~v~~~~v~~~~~~~~g~~~~~~v~~~ 502 (569)
. .|.|..+....... ...-++|+++.
T Consensus 461 ~~l~~~g~~l~eft~~~d~~~~-p~Hyv~~wEl~ 493 (609)
T 4b2g_A 461 KLLREVNTSVVEYTSFADTKTI-PGHYVIYWELL 493 (609)
T ss_dssp HGGGGTTEEEEEEEEEEECSSS-SCEEEEEEEEE
T ss_pred HhhhccCCeEEEEEEecCCCCC-CCcEEEEEEEe
Confidence 2 35676665432222 11234445554
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=6.8e-08 Score=98.87 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=52.0
Q ss_pred CceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcC----CCeEEEecccCceEEeCceeechHHHHHHHhcC
Q 008342 400 KTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP----DNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 475 (569)
Q Consensus 400 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 475 (569)
|+.+||++|..+ |.|+ |++||++++.. ..++.|.||.+|++.+.|++++..+||++|.+.
T Consensus 384 G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 384 GCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp TCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred CceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 478999999863 4554 99999999985 368999999999999999999999999999754
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=96.51 Aligned_cols=86 Identities=9% Similarity=0.050 Sum_probs=63.1
Q ss_pred ceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCC----CeEEEecccCceEEeCceeechHHHHHHHhcC-
Q 008342 401 TIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD----NYIEIKDRLKDVIISGGENISSVEVEKVLYLH- 475 (569)
Q Consensus 401 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~----g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~- 475 (569)
+.+||++|... |.|+ |++||++++..- ..+.|.||.++++.+.|++++..+||++|.+.
T Consensus 392 ~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~ 455 (581)
T 4epl_A 392 EEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAA 455 (581)
T ss_dssp CEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHH
T ss_pred CeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHH
Confidence 78999999863 5554 999999998742 57999999999999999999999999998742
Q ss_pred -----C--CceeeEEEeecCCCCCceeeEEEEecC
Q 008342 476 -----P--LVLEAAVVARPDERWGESPCAFVTLKP 503 (569)
Q Consensus 476 -----~--~v~~~~v~~~~~~~~g~~~~~~v~~~~ 503 (569)
. .|.|..+....... .-.-++|++...
T Consensus 456 ~~l~~~~~~l~eft~~~d~~~~-p~hyv~~wE~~~ 489 (581)
T 4epl_A 456 KRLSEEKIEVIDFSSYIDVSTD-PGHYAIFWEISG 489 (581)
T ss_dssp HHHHTTTCCEEEEEEEEECSSS-SCEEEEEEEESS
T ss_pred HhhcccCCeEEEEEEecCCCCC-CCcEEEEEeecC
Confidence 2 46677766532221 122344456643
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.92 Score=45.15 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=71.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCc--hhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEE
Q 008342 44 KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNV--PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVV 121 (569)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 121 (569)
-.+|.+.+...+..++..+...|+.++|++...++.. ...+...++++..|+..++++. .+.+.+...+++.++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 3589999988888888888788999999999988853 3345567888999999887765 478899999999999999
Q ss_pred EEcccchHHHHH
Q 008342 122 IVDQEFFSLAEE 133 (569)
Q Consensus 122 i~~~~~~~~~~~ 133 (569)
+..+.....+.+
T Consensus 187 ~~~Ps~~~~l~~ 198 (437)
T 2y27_A 187 MVTPSYMLSIAD 198 (437)
T ss_dssp EECHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 988876655544
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=91.47 E-value=1 Score=44.87 Aligned_cols=89 Identities=10% Similarity=0.072 Sum_probs=71.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCc--hhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEE
Q 008342 44 KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNV--PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVV 121 (569)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 121 (569)
-.+|.+.+...+..++..+...|+.++|++...++-+ ...+...++++..|+..++++.. +.+.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 3589999998888888888788999999999988853 33455678888999998887654 78899999999999999
Q ss_pred EEcccchHHHHH
Q 008342 122 IVDQEFFSLAEE 133 (569)
Q Consensus 122 i~~~~~~~~~~~ 133 (569)
+..+.....+.+
T Consensus 189 ~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 189 LVTPSYMLNLID 200 (443)
T ss_dssp EECHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 988876655443
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=91.26 E-value=1 Score=44.74 Aligned_cols=90 Identities=12% Similarity=0.003 Sum_probs=72.8
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCc--hhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEE
Q 008342 44 KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNV--PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVV 121 (569)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 121 (569)
-.+|.+.+...+..++..+...++.++|++...++-+ ...+..+++++..|+..++.+.. ..+.+...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 4589999999888888888888999999999988753 34455678889999998877554 77889999999999999
Q ss_pred EEcccchHHHHHH
Q 008342 122 IVDQEFFSLAEEA 134 (569)
Q Consensus 122 i~~~~~~~~~~~~ 134 (569)
+..+.....+...
T Consensus 183 ~~~P~~~~~l~~~ 195 (436)
T 3qov_A 183 HAIPSYAIRLAEV 195 (436)
T ss_dssp ECCHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
Confidence 9888766555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 569 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-108 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-105 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 6e-95 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 2e-89 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 1e-79 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 4e-77 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 3e-74 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 336 bits (862), Expect = e-108
Identities = 125/560 (22%), Positives = 216/560 (38%), Gaps = 51/560 (9%)
Query: 26 INRAATLHPTRKSVVY------GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPN 79
++R + R ++++ SKH ++ + +R RFA+ L L I G V++ P
Sbjct: 78 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 137
Query: 80 VPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMME 139
VP A GAV + I + VA + +SS +VI E ++
Sbjct: 138 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSI--PLK 195
Query: 140 ANSEGKLKTP------HLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPED 193
N + LK P H+IV+ D E + + +E PE +
Sbjct: 196 KNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEG----RDLWWRDLIEKASPEHQPEAMNA 251
Query: 194 EWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNG-ALIWGMNEGAVFLWTLPMFHGNGWS 252
E + + YTSG+T PKGV+ + G + + ++ + G ++ T + G S
Sbjct: 252 E-DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHS 310
Query: 253 YTWSLAALCGTSICL-----RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED-TI 306
Y CG + + T + + H V AP + A+ +
Sbjct: 311 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEG 370
Query: 307 LPLTNVVNVNTAGAPPPPSLLFAMSQK----GFRITHTYGLTELTGPASVCAWKPEWDSL 362
+++ + + G P P +K + T+ TE G
Sbjct: 371 TDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT---------- 420
Query: 363 PFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC--VMKGYLKNP 420
P L A R ++D + P +G T G +V+ S + +
Sbjct: 421 PLPGAIELKAGSATRPFFGVQPALVDNEGH---PQEGATEGNLVITDSWPGQARTLFGDH 477
Query: 421 KANEEAFA---NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPL 477
+ E+ + + SGD A + D Y I R+ DV+ G + + E+E L HP
Sbjct: 478 ERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPK 537
Query: 478 VLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF- 536
+ EAAVV P G++ A+VTL + +L +V + R ++ P + +
Sbjct: 538 IAEAAVVGIPHAIKGQAIYAYVTLNHGEE--PSPELYAEVRNWVRKEIGPLATPDVLHWT 595
Query: 537 AALPKSATGKIQKHLLRAKA 556
+LPK+ +GKI + +LR A
Sbjct: 596 DSLPKTRSGKIMRRILRKIA 615
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 325 bits (834), Expect = e-105
Identities = 174/543 (32%), Positives = 250/543 (46%), Gaps = 38/543 (6%)
Query: 25 FINRAATLHPTRKSVVYGS----KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNV 80
F+ RAA L ++ V T+ + Y+R RR L L +G+G V+ + N
Sbjct: 16 FLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH 75
Query: 81 PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEA 140
EA F P GAVL++ N RL+ +A+IL+HA V++ D L E
Sbjct: 76 FRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR----- 130
Query: 141 NSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIAL 200
G+LKT V+ DE L Y E E A E + +
Sbjct: 131 ---GELKTVQHFVVMDEKAPEGYLAY-------------EEALGEEADPVRVPERAACGM 174
Query: 201 GYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWSLA 258
YT+GTT PKGVV SHR L SL +L+ ++E V L +PMFH N W ++
Sbjct: 175 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAAT 234
Query: 259 ALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 317
+ + ++ ++ GVT P V A+A+ L + +
Sbjct: 235 LVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG-HRLKTLRRLVV 293
Query: 318 AGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVR 377
G+ P SL+ + G + YGLTE + K +SL E + L A+ G
Sbjct: 294 GGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG-L 352
Query: 378 TICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGD 436
I L L V D +PVP DGK +GE+ ++G + GY N +A A +G+F +GD
Sbjct: 353 PIPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGD 411
Query: 437 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC 496
+AV + Y+EIKDRLKD+I SGGE ISSV++E L HP V EAAVVA P +W E P
Sbjct: 412 IAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPL 471
Query: 497 AFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLRAK 555
A V + E + E +A + +P + VF +P+++ GK K LR +
Sbjct: 472 AVVVPRGEKPTPE-----ELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQ 526
Query: 556 AKE 558
K
Sbjct: 527 YKN 529
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 301 bits (771), Expect = 6e-95
Identities = 113/560 (20%), Positives = 199/560 (35%), Gaps = 41/560 (7%)
Query: 26 INRAATLHPTRKSVVYGS------KHYTWHQTYRRCRRFASAL-SKLSIGLGTTVSVIAP 78
++R A P +K++++ T+ + + A L + + G TV+V P
Sbjct: 65 VDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMP 124
Query: 79 NVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMM 138
VP GA+ + + ++ + ++ S VVI E +
Sbjct: 125 MVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVI--ET 182
Query: 139 EANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSI 198
+ + L+ + + A + + P D +
Sbjct: 183 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPL 242
Query: 199 ALGYTSGTTASPKGVVVSHRGAYLMSL-NGALIWGMNEGAVFLWTLPMFHGNGWSYTWSL 257
L YTSG+T +PKGV S G L +L + ++ VF + G +Y
Sbjct: 243 FLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYG 302
Query: 258 AALCGTSICLRQVT-----AKAVYTAIATHGVTHFCAAPVVLNAIANASPED-TILPLTN 311
L G + + + T + I H VT F AP L + A L +
Sbjct: 303 PLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKS 362
Query: 312 VVNVNTAGAPPPPSLLFAMSQK----GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQ 367
+ + + G P + S+K I TY TE P
Sbjct: 363 LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSAS 422
Query: 368 ARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC--VMKGYLKNPKANEE 425
G+ + LD G + ++ + + KN +
Sbjct: 423 FPF---FGIDAVVLDP-------NTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLD 472
Query: 426 AFAN---GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 482
+ N G++ +GD A K D YI I R+ DV+ G +S+ E+E + P+V E A
Sbjct: 473 TYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECA 532
Query: 483 VVARPDERWGESPCAFVTLKPEAD-----ELDKGKLAEDVSKFCRAKMPSYWVPKSVVF- 536
VV D+ G++ AFV LK ++ + + + + + R + + PK ++
Sbjct: 533 VVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILV 592
Query: 537 AALPKSATGKIQKHLLRAKA 556
LPK+ +GKI + +LR
Sbjct: 593 DDLPKTRSGKIMRRILRKIL 612
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 284 bits (726), Expect = 2e-89
Identities = 114/550 (20%), Positives = 208/550 (37%), Gaps = 46/550 (8%)
Query: 25 FINRAATLHPTRKSVV-----YGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPN 79
+++A + + + + T+ + + R A A+ + + + V + N
Sbjct: 22 QLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN 81
Query: 80 VPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMME 139
+ GA G + N N + ++ + VV V ++ K
Sbjct: 82 SLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK--- 138
Query: 140 ANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA 199
KL I+I D D + + + + +F + + +
Sbjct: 139 -----KLPIIQKIIIMDSKTDYQGFQSMYT--FVTSHLPPGFNEYDFVPESFDRDKTIAL 191
Query: 200 LGYTSGTTASPKGVVVSHRGA---YLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWS 256
+ +SG+T PKGV + HR A + + + + L +P HG G T
Sbjct: 192 IMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLG 251
Query: 257 LAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVN 316
+ + + + ++ + + P + + A + L+N+ +
Sbjct: 252 YLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS-TLIDKYDLSNLHEIA 310
Query: 317 TAGAPPPPSLL--FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQ 374
+ GAP + A I YGLTE T PE D P
Sbjct: 311 SGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTS---AILITPEGDDKP--------GAV 359
Query: 375 GVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFH 433
G + + V+D T + + + GE+ +RG +M GY+ NP+A +GW H
Sbjct: 360 G-KVVPFFEAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLH 416
Query: 434 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493
SGD+A D + I DRLK +I G ++ E+E +L HP + +A V PD+ GE
Sbjct: 417 SGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGE 476
Query: 494 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVF-AALPKSATGKIQKHL 551
P A V L+ + +++ + +++ + + VVF +PK TGK+
Sbjct: 477 LPAAVVVLEHGKTMTE-----KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARK 531
Query: 552 LR---AKAKE 558
+R KAK+
Sbjct: 532 IREILIKAKK 541
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 257 bits (658), Expect = 1e-79
Identities = 87/541 (16%), Positives = 172/541 (31%), Gaps = 70/541 (12%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMY 84
+ P ++V ++ T+H+ + + A + IG T V ++ ++
Sbjct: 28 LFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLF 87
Query: 85 EAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEG 144
AG I+I + +IL + + +++ + L
Sbjct: 88 IGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI---------- 137
Query: 145 KLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTS 204
+E+ P + YTS
Sbjct: 138 ----------------------QFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTS 175
Query: 205 GTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTS 264
GTT +PKG ++ H+G + + + E + + +
Sbjct: 176 GTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASL 235
Query: 265 ICLRQVTAK---AVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAP 321
+ + T I +T P + + + ++ + TAG+
Sbjct: 236 YIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE-------RILSIQTLITAGSA 288
Query: 322 PPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICL 381
PSL+ ++ + YG TE T A+ E ++ I
Sbjct: 289 TSPSLVNKW-KEKVTYINAYGPTETTICATTWVATKETIG---------HSVPIGAPIQN 338
Query: 382 DGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN-------GWFHS 434
+ ++D Q GE+ + G + +GY K P+ + F + + +
Sbjct: 339 TQIYIVDE-NLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT 395
Query: 435 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGES 494
GD A D IE R+ + + G + EVE +L H + E AV D +
Sbjct: 396 GDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPY 455
Query: 495 PCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLLR 553
CA+ + E + +F ++P+Y +P + +P ++ GKI + L
Sbjct: 456 LCAYFVSEKHIPL-------EQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLP 508
Query: 554 A 554
Sbjct: 509 E 509
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 250 bits (639), Expect = 4e-77
Identities = 124/540 (22%), Positives = 209/540 (38%), Gaps = 54/540 (10%)
Query: 25 FINRAATLHPTRKSVVYGS--KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPA 82
+ RAAT P ++ + T + R A+ L + V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 MYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANS 142
+ A GAV +N RL + +A ++ ++ + + + +
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIA-----VGRQVADAIFQSG 121
Query: 143 EGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGY 202
G +I +GD D + Y P + Q + Y
Sbjct: 122 SG----ARIIFLGDLVRDGEPYSYG-----------------PPIEDPQREPAQPAFIFY 160
Query: 203 TSGTTASPKGVVVSHRG--AYLMSLNGALIWGMNEGAVFLWTLPMF-HGNGWSYTWSLAA 259
TSGTT PK ++ R + ++ ++ + V L +P++ ++ + A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 260 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTI-LPLTNVVNVNTA 318
L GT + + + + VT A P L+A+A A+ L L ++ +V A
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 319 GAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVR 377
GA P ++L + Q + YG TE + K +
Sbjct: 281 GATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE--------------MAP 326
Query: 378 TICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDL 437
+ V + A+G+ IV GYL P+A E +GW+ + D+
Sbjct: 327 GFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDV 386
Query: 438 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497
AV P+ + I R+ D+IISGGENI E+E+VL P V E V+ D+RWG+S A
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 498 FVTLKPEADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVF-AALPKSATGKIQKHLLRAK 555
V + L A+ + FCR+ ++ + PK LPK+A K+ + L +
Sbjct: 447 CVVPRLGE-TLS----ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQ 501
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 244 bits (622), Expect = 3e-74
Identities = 113/539 (20%), Positives = 192/539 (35%), Gaps = 42/539 (7%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMY 84
+ A + R ++ G+ H+++ + R R A+ KL I V V PN+ +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 85 EAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEG 144
E F GA+ ++ + + A +A I+ + +L +
Sbjct: 90 EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP 149
Query: 145 KLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTS 204
LK + G E LE E P L +
Sbjct: 150 TLKNI------------------IVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSG 191
Query: 205 GTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCG-- 262
G+T K + +H + ++ V+L LPM H S L L
Sbjct: 192 GSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGG 251
Query: 263 TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPP 322
+ + + I VT P + +A+ + V
Sbjct: 252 RVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFS 311
Query: 323 PPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLD 382
+ + G + +G+ E + E QG D
Sbjct: 312 AEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIV----------NTQGKPMSPYD 361
Query: 383 GLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKH 441
V D ++ V G ++ RG ++GY K + N +F +G++ +GD+
Sbjct: 362 ESRVWDD-HDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLT 418
Query: 442 PDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTL 501
D YI ++ R KD I GGE +++ EVE L HP V +AA+V+ PD+ GE C F+
Sbjct: 419 RDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIP 478
Query: 502 KPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVF-AALPKSATGKIQKHLLRAKAKE 558
+ EA + A ++ F R + + +Y +P V F + P++ GK+ K LR E
Sbjct: 479 RDEAPK------AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 569 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 88.17 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=2.1e-76 Score=629.80 Aligned_cols=514 Identities=23% Similarity=0.303 Sum_probs=419.8
Q ss_pred cCH-HHHHHHhhhhCCCceeeeeCC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhh
Q 008342 20 LTP-LWFINRAATLHPTRKSVVYGS------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPM 92 (569)
Q Consensus 20 ~~l-~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 92 (569)
.|+ .++|+++++.+||++|+++.+ +++||+||.+++.++|++|+++|+++||+|+++++|++++++++|||++
T Consensus 71 ~N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~ 150 (643)
T d1pg4a_ 71 LNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACAR 150 (643)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHH
Confidence 344 467889999999999999642 6799999999999999999999999999999999999999999999999
Q ss_pred cCceEeeccccCCHHHHHHHHhcCCceEEEEcccch---------HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhh
Q 008342 93 AGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ 163 (569)
Q Consensus 93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (569)
+|++++|+++.++.+++.+++++++++++|+++... .......+.. ......+++.+.........
T Consensus 151 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~i~~~~~~~~~~~ 225 (643)
T d1pg4a_ 151 IGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNP-----NVTSVEHVIVLKRTGSDIDW 225 (643)
T ss_dssp HTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTST-----TCCSCCEEEEECSSCCCCCC
T ss_pred hCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhcc-----ccccceEEEEeccCCccccc
Confidence 999999999999999999999999999999976532 2222222111 11145667776654322110
Q ss_pred hHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHH-hHhHhCCCCCcEEEEc
Q 008342 164 LEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLN-GALIWGMNEGAVFLWT 242 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~-~~~~~~~~~~d~~~~~ 242 (569)
.......+........+... .....++++++|+|||||||.||+|+++|++++..... ....++++++|++++.
T Consensus 226 ----~~~~~~~~~~~~~~~~~~~~-~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~ 300 (643)
T d1pg4a_ 226 ----QEGRDLWWRDLIEKASPEHQ-PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 300 (643)
T ss_dssp ----CBTTEEEHHHHHTTSCSCCC-CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred ----ccccchhhhhhhcccCcccC-CCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEe
Confidence 01112233333333333322 23357889999999999999999999999997655444 4456789999999999
Q ss_pred CCccchhhHHHHH-HHHHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCcccceee
Q 008342 243 LPMFHGNGWSYTW-SLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNV 315 (569)
Q Consensus 243 ~p~~~~~g~~~~~-~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~~ 315 (569)
.|++|++|+...+ ..++.|++++++.. +++..+++.|+++++|++.++|+++..|++.... ...+ +++||.+
T Consensus 301 ~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~d-l~sLr~i 379 (643)
T d1pg4a_ 301 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD-RSSLRIL 379 (643)
T ss_dssp SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCC-CTTCCEE
T ss_pred CChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccC-CCceEEE
Confidence 9999999987655 45566777777643 4789999999999999999999999999876432 2233 8999999
Q ss_pred eecCCCCCHHHHHHhhhc----CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCC
Q 008342 316 NTAGAPPPPSLLFAMSQK----GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDART 391 (569)
Q Consensus 316 ~~~g~~l~~~~~~~~~~~----~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~ 391 (569)
+++|+++++++.+++.+. ++++++.||+||+|++++..... ......+++|.|++++ +++|+|++
T Consensus 380 ~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~---------~~~~~~gs~G~p~~g~-~v~ivd~~- 448 (643)
T d1pg4a_ 380 GSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPG---------AIELKAGSATRPFFGV-QPALVDNE- 448 (643)
T ss_dssp EEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTT---------TCCBCTTCCBSBCTTC-CEEEECTT-
T ss_pred EEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCC---------ccCCCCCccccccCCC-EEEEECCC-
Confidence 999999999999988743 57899999999999776653221 1122347899999999 69999987
Q ss_pred CcccCCCCCceEEEEEecC--cccccccCCcchhhhhh---cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechH
Q 008342 392 NQPVPADGKTIGEIVMRGS--CVMKGYLKNPKANEEAF---ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSV 466 (569)
Q Consensus 392 ~~~~~~~~~~~Gel~v~~~--~~~~gy~~~~~~~~~~~---~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~ 466 (569)
|++++.+ +.|||+++|+ +++.||+++++.+...+ .+|||+|||+|++++||+++++||.||+|+++|++|+|.
T Consensus 449 g~~~~~g--~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~ 526 (643)
T d1pg4a_ 449 GHPQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTA 526 (643)
T ss_dssp CCBCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHH
T ss_pred CCCCCCC--ceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHH
Confidence 8888887 8999999994 68899999988776654 489999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCC
Q 008342 467 EVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATG 545 (569)
Q Consensus 467 ~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~G 545 (569)
|||++|.+||.|.+|+|++.+++..|+.+++||++.++.... .++.++|+++|+++|++|++|..|++++ ||+|++|
T Consensus 527 eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~--~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sG 604 (643)
T d1pg4a_ 527 EIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPS--PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 604 (643)
T ss_dssp HHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC--HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTS
T ss_pred HHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCC--HHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCc
Confidence 999999999999999999999998899999999998875432 2256789999999999999999999887 9999999
Q ss_pred cccHHHHHHHHHhc
Q 008342 546 KIQKHLLRAKAKEM 559 (569)
Q Consensus 546 Ki~r~~l~~~~~~~ 559 (569)
|++|++|++++...
T Consensus 605 Ki~R~~Lr~~~~~~ 618 (643)
T d1pg4a_ 605 KIMRRILRKIAAGD 618 (643)
T ss_dssp CBCHHHHHHHHHTC
T ss_pred CccHHHHHHHhcCC
Confidence 99999999998764
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.1e-76 Score=619.45 Aligned_cols=516 Identities=33% Similarity=0.492 Sum_probs=404.9
Q ss_pred ccccccCHHHHHHHhhhhCCCceeeeeCC----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHh
Q 008342 15 ANYTALTPLWFINRAATLHPTRKSVVYGS----KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGA 90 (569)
Q Consensus 15 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~ 90 (569)
....++||+++|+++|+++||++|+++.+ +++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 6 ~~~~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 85 (534)
T d1v25a_ 6 MMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 85 (534)
T ss_dssp BCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHH
Confidence 33457799999999999999999999854 57999999999999999999999999999999999999999999999
Q ss_pred hhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhc
Q 008342 91 PMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALAR 170 (569)
Q Consensus 91 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (569)
+++|++++|++|.++.+++.++|+.+++++++++............... .....+...+.....
T Consensus 86 ~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--------- 149 (534)
T d1v25a_ 86 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK-------TVQHFVVMDEKAPEG--------- 149 (534)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCS-------SCCEEEESSSCCCTT---------
T ss_pred HHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhccc-------ccceeEEeecccccc---------
Confidence 9999999999999999999999999999999999988777666544443 334444443332111
Q ss_pred chhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHh--HhCCCCCcEEEEcCCccch
Q 008342 171 GAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL--IWGMNEGAVFLWTLPMFHG 248 (569)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~--~~~~~~~d~~~~~~p~~~~ 248 (569)
....... ...........++++++++|||||||.||+|.++|.+++........ .+....++++++.+|++|.
T Consensus 150 -~~~~~~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 224 (534)
T d1v25a_ 150 -YLAYEEA----LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHV 224 (534)
T ss_dssp -CEEHHHH----CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSH
T ss_pred -ccccccc----ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhh
Confidence 0111110 11111223356788999999999999999999999999766544333 4567789999999999999
Q ss_pred hhHHHHHHHHHhcceEEEe-ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHH
Q 008342 249 NGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLL 327 (569)
Q Consensus 249 ~g~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~ 327 (569)
+++...+..++.|++++.. +.+++..+..+++++++|++.++|.++..++......... +++||.+++||++++++..
T Consensus 225 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~-~~~lr~~~~gG~~~~~~~~ 303 (534)
T d1v25a_ 225 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR-LKTLRRLVVGGSAAPRSLI 303 (534)
T ss_dssp HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCC-CSSCCEEEECSSCCCHHHH
T ss_pred ccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccccc-ccceeEEEEecCCCCHHHH
Confidence 9999999999999988887 4589999999999999999999999999998775544444 8999999999999999999
Q ss_pred HHhhhcCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEE
Q 008342 328 FAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVM 407 (569)
Q Consensus 328 ~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v 407 (569)
+++++.+.++++.||+||+++++..+..................+++|.|++++ +++|+|++ ++.++.+.++.|||++
T Consensus 304 ~~~~~~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~-~~~i~d~~-~~~~~~~~~~~Gel~v 381 (534)
T d1v25a_ 304 ARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADEE-GRPVPKDGKALGEVQL 381 (534)
T ss_dssp HHHHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECTT-SCBCCSSSCCCEEEEE
T ss_pred HHHHHhCCeeeeeccccccccceeecccCccccccCccccccccccceeccCCc-EEEEECCC-CCCCCCCCCeeEEEEE
Confidence 999999999999999999998887765555444455555556678999999999 69999987 8888887668999999
Q ss_pred ecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEee
Q 008342 408 RGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 486 (569)
Q Consensus 408 ~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 486 (569)
+|++++.||+++++.+...| .+|||+|||+|++++||++++.||.||+|+++|++|+|.+||++|.+||.|.+++|++.
T Consensus 382 ~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~ 461 (534)
T d1v25a_ 382 KGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAI 461 (534)
T ss_dssp ESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEE
T ss_pred cCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEE
Confidence 99999999999999988887 68899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 487 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
+++..++.++|+|++..+... ..+.+..++++.|++|++|..|.+++ ||+|++|||+|++||++|.+.
T Consensus 462 ~~~~~~~~l~a~vv~~~~~~~-----~~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~~ 530 (534)
T d1v25a_ 462 PHPKWQERPLAVVVPRGEKPT-----PEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 530 (534)
T ss_dssp ECSSSSEEEEECC------------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred ECCCCCeEEEEEEEeCCCCCC-----HHHHHHHHHHhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHhh
Confidence 999999999999887755432 22334445888999999999998777 999999999999999988653
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=1.3e-74 Score=609.33 Aligned_cols=520 Identities=21% Similarity=0.295 Sum_probs=428.8
Q ss_pred ccCCccccccccccccCHHHHHHHhhhhC---CCceeeeeCC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Q 008342 5 KDIDDLPKISANYTALTPLWFINRAATLH---PTRKSVVYGS--KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPN 79 (569)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~l~~~a~~~---p~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~ 79 (569)
+++..-+.+..+.++.|+.++|.+++++| |+.+|+.+.+ +++||+||.+++.++|++|+++|+++||+|+++++|
T Consensus 2 ~~~~~~p~p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n 81 (541)
T d1lcia_ 2 KNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN 81 (541)
T ss_dssp TTSEECCCCSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSS
T ss_pred CCCCcCCCCCCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCC
Confidence 44555567777777889999999999888 7778888754 689999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCc
Q 008342 80 VPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESC 159 (569)
Q Consensus 80 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 159 (569)
++++++++|||+++|++++|+++.++.+++.++|+.++++++|++++..+.+.++...++ ....+++++....
T Consensus 82 s~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 154 (541)
T d1lcia_ 82 SLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLP-------IIQKIIIMDSKTD 154 (541)
T ss_dssp CSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCT-------TCCEEEETTCSSC
T ss_pred CHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhcccccc-------ccceeeeecCCcc
Confidence 999999999999999999999999999999999999999999999998888888777776 5666766665432
Q ss_pred chhhhHHhhhcchhhHHhhhhc------CCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH---
Q 008342 160 DSKQLEYALARGAIEYEKFLET------GDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI--- 230 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~--- 230 (569)
.. +...+...... ......+.....++++++|+|||||||.||+|.++|++++.........
T Consensus 155 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~ 225 (541)
T d1lcia_ 155 YQ---------GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFG 225 (541)
T ss_dssp BT---------TBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTS
T ss_pred cc---------ccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccc
Confidence 21 11111111111 1111222233567889999999999999999999999988766655443
Q ss_pred hCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcc
Q 008342 231 WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLT 310 (569)
Q Consensus 231 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~ 310 (569)
..+.+++++++.+|++|..+....+.....++..+.....+.......+.++++|.+..+|.++..+.......... ++
T Consensus 226 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~-~~ 304 (541)
T d1lcia_ 226 NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYD-LS 304 (541)
T ss_dssp CCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSC-CT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccc-cc
Confidence 35778999999999999999999988888898888888889999999999999999999999999999887766665 88
Q ss_pred cceeeeecCCCCCHHHHHHhhhc-C-CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeee
Q 008342 311 NVVNVNTAGAPPPPSLLFAMSQK-G-FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVID 388 (569)
Q Consensus 311 ~l~~~~~~g~~l~~~~~~~~~~~-~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d 388 (569)
+++.+++||+++++...+++.+. + ..+++.||+||+++.++..... ....+++|+|++++ +++|+|
T Consensus 305 ~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~~~~-~~~i~d 372 (541)
T d1lcia_ 305 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG-----------DDKPGAVGKVVPFF-EAKVVD 372 (541)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC--------------CCCCBEECTTC-EEEEEC
T ss_pred cceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcc-----------cCCCCccccccCCC-EEEEEE
Confidence 99999999999999999998854 4 5799999999999887765422 12347899999999 699999
Q ss_pred CCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHH
Q 008342 389 ARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVE 467 (569)
Q Consensus 389 ~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ 467 (569)
++++++++.| +.|||+|+|++++.||++++..+...+ .+|||+|||+|+++++|++++.||.||+|+++|++|+|.+
T Consensus 373 ~d~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~ 450 (541)
T d1lcia_ 373 LDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE 450 (541)
T ss_dssp TTTCCBCCTT--CCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHH
T ss_pred CCCCcCCCCC--CeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHH
Confidence 9999999988 789999999999999999888777766 4789999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCC-cCCceEEecc-CCCCCCC
Q 008342 468 VEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFAA-LPKSATG 545 (569)
Q Consensus 468 iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~~i~~~~-lP~t~~G 545 (569)
||++|.++|.|.+|+|++.+++..|+.++++|++.++... ..++|+++|+++++++ ++|..+++++ ||+|++|
T Consensus 451 IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~-----~~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~G 525 (541)
T d1lcia_ 451 LESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM-----TEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTG 525 (541)
T ss_dssp HHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC-----CHHHHHHHHHHHSCGGGSCTTEEEEESSCCC----
T ss_pred HHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCC-----CHHHHHHHHHHhCCccccCCcEEEEeCCCCcCCCc
Confidence 9999999999999999999988889999999998876554 5578999999999876 4799888777 9999999
Q ss_pred cccHHHHHHHHHhcC
Q 008342 546 KIQKHLLRAKAKEMG 560 (569)
Q Consensus 546 Ki~r~~l~~~~~~~~ 560 (569)
|++|++|++++.+++
T Consensus 526 Ki~r~~l~~~~~~~~ 540 (541)
T d1lcia_ 526 KLDARKIREILIKAK 540 (541)
T ss_dssp -CCHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHhC
Confidence 999999999998764
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.7e-73 Score=609.54 Aligned_cols=520 Identities=21% Similarity=0.271 Sum_probs=408.3
Q ss_pred HHHHHHhhhhCCCceeeeeCC------eeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 23 LWFINRAATLHPTRKSVVYGS------KHYTWHQTYRRCRRFASALS-KLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 23 ~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~-~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
.++|+++|+++||++|+++.+ +++||+||.++++++|++|+ ++|+++||+|+++++|++++++++|||+++|+
T Consensus 62 ~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Ga 141 (640)
T d1ry2a_ 62 YNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGA 141 (640)
T ss_dssp HHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCce
Confidence 788999999999999998642 78999999999999999997 68999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchH-----HHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhc
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFS-----LAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALAR 170 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (569)
+++|+++.++.+++.++++++++++++++..... .......... ...........+.......... ...
T Consensus 142 v~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~ 215 (640)
T d1ry2a_ 142 IHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDAL---RETPGVRHVLVYRKTNNPSVAF---HAP 215 (640)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHT---TSCTTCCEEEEECSSCCSSCCC---CSS
T ss_pred EeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhh---hhhcccceeeeecccccccccc---ccc
Confidence 9999999999999999999999999999865321 0111111111 1111233333333222111000 000
Q ss_pred chhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhH-hHhCCCCCcEEEEcCCccchh
Q 008342 171 GAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA-LIWGMNEGAVFLWTLPMFHGN 249 (569)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~ 249 (569)
....+...... ........+..++++++|+|||||||.||+|+++|++++....... ..+.+.++|++++.+|++|++
T Consensus 216 ~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~ 294 (640)
T d1ry2a_ 216 RDLDWATEKKK-YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWIT 294 (640)
T ss_dssp SEEEHHHHHTT-SCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHH
T ss_pred ccccccccccc-cccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhh
Confidence 11111111111 1122222345678999999999999999999999999877655444 466899999999999999999
Q ss_pred hHHHHHH-HHHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCC-CCCCcccceeeeecCCCCC
Q 008342 250 GWSYTWS-LAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED-TILPLTNVVNVNTAGAPPP 323 (569)
Q Consensus 250 g~~~~~~-~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~l~~l~~~~~~g~~l~ 323 (569)
|+.+.+. ++..|+++++... +++..+++.|+++++|++.++|++++.|.+..... ...++++||.+++||++++
T Consensus 295 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~ 374 (640)
T d1ry2a_ 295 GHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIA 374 (640)
T ss_dssp HHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCC
T ss_pred hHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCc
Confidence 9875554 4556667777643 37899999999999999999999999998765432 2223899999999999999
Q ss_pred HHHHHHhhhc----CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCC
Q 008342 324 PSLLFAMSQK----GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADG 399 (569)
Q Consensus 324 ~~~~~~~~~~----~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~ 399 (569)
+++.+++.+. ++++++.||+||++.......... ......+++|.|++++ +++|+|++++..++..+
T Consensus 375 ~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~--------~~~~~~gs~G~p~~g~-~~~i~d~~~~~~~~~~~ 445 (640)
T d1ry2a_ 375 AEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG--------VTPMKPGSASFPFFGI-DAVVLDPNTGEELNTSH 445 (640)
T ss_dssp HHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT--------CCCCCTTCCCEECTTC-CEEEECSSSTTCEECSS
T ss_pred HHHHHHHHHhcCCCcceEEeeecccccccccccccCCC--------cCCCCCcccccccCCc-eEEEEeCCCCcccCCCC
Confidence 9999999854 357999999999987665543222 1223447899999999 69999998776655443
Q ss_pred CceEEEEEec--CcccccccCCcchhhhhh---cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhc
Q 008342 400 KTIGEIVMRG--SCVMKGYLKNPKANEEAF---ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 474 (569)
Q Consensus 400 ~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 474 (569)
..|||++++ |+++.|||++++.+.+.| .+|||+|||+|++|+||+++|+||.||+|+++|++|+|.+||++|.+
T Consensus 446 -~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~ 524 (640)
T d1ry2a_ 446 -AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIE 524 (640)
T ss_dssp -CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHS
T ss_pred -ceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHh
Confidence 579999998 589999999999888876 35899999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeecCCCCCceeeEEEEecCCcchhh-----hhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCccc
Q 008342 475 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELD-----KGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQ 548 (569)
Q Consensus 475 ~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~-----~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~ 548 (569)
||.|.+|+|++.+++..|+.++++|++.++..... .....++|.++++++|++|++|+.+++++ ||+|++|||+
T Consensus 525 ~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~ 604 (640)
T d1ry2a_ 525 DPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIM 604 (640)
T ss_dssp STTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBC
T ss_pred CCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCcc
Confidence 99999999999999999999999999987643211 12356789999999999999999999887 9999999999
Q ss_pred HHHHHHHHHhc
Q 008342 549 KHLLRAKAKEM 559 (569)
Q Consensus 549 r~~l~~~~~~~ 559 (569)
|++||+++..+
T Consensus 605 R~~Lr~~~~~~ 615 (640)
T d1ry2a_ 605 RRILRKILAGE 615 (640)
T ss_dssp HHHHHHSCC--
T ss_pred HHHHHHHHhCC
Confidence 99999987653
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=2.8e-70 Score=572.36 Aligned_cols=478 Identities=18% Similarity=0.253 Sum_probs=404.8
Q ss_pred cccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 18 TALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
.+.||.++|+++|+++||++|+++.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+++
T Consensus 21 ~~~tl~~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~ 100 (514)
T d1amua_ 21 RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY 100 (514)
T ss_dssp TTCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCCcHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHh
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEK 177 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (569)
+|+++.++.+++.++++.++++++|++......+... . ...........
T Consensus 101 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~----~-------~~~~~~~~~~~-------------------- 149 (514)
T d1amua_ 101 VPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI----Q-------FNGQVEIFEED-------------------- 149 (514)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS----C-------CCSEEEECCCS--------------------
T ss_pred EEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhh----c-------ccccccccccc--------------------
Confidence 9999999999999999999999999998765543321 0 11111111111
Q ss_pred hhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHH
Q 008342 178 FLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSL 257 (569)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 257 (569)
............+..++++++|+|||||||.||+|.+||.++..........+....++++++..|++|.+++...+..
T Consensus 150 -~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 228 (514)
T d1amua_ 150 -TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMA 228 (514)
T ss_dssp -TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHH
T ss_pred -cccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccccccccc
Confidence 1111222222344567899999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHhcceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcC
Q 008342 258 AALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKG 334 (569)
Q Consensus 258 ~~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~ 334 (569)
++.+++.+.... .+...+++.+..+.++.+...|...... .... +.+++.++++|+++++++.+++.+ +
T Consensus 229 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~l~~~~~~G~~~~~~~~~~~~~-~ 300 (514)
T d1amua_ 229 LLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPER-ILSIQTLITAGSATSPSLVNKWKE-K 300 (514)
T ss_dssp HTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CTTT-CCSCSEEEEESSCCCHHHHHHHTT-T
T ss_pred ccccccccccccccccchhhhhhhhhhhhcccccceeeecccc------cccc-cccccEEEEecccCCHHHhhhhcc-c
Confidence 888888887743 5667889999999999999999764432 1122 889999999999999999987765 6
Q ss_pred CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccc
Q 008342 335 FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMK 414 (569)
Q Consensus 335 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 414 (569)
+.+++.||+||++++++........ .....+.|.+.+.. .+.+.|++ +++++.| +.|||+|+|++++.
T Consensus 301 ~~~~~~yG~tE~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~v~~~d~~-~~~~~~g--~~GEl~v~~~~~~~ 368 (514)
T d1amua_ 301 VTYINAYGPTETTICATTWVATKET--------IGHSVPIGAPIQNT-QIYIVDEN-LQLKSVG--EAGELCIGGEGLAR 368 (514)
T ss_dssp SEEEEEECCGGGSSCSEEEECCSSC--------CCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCCC
T ss_pred eeEEEeeccccCceeeeeccccccc--------cCcccccccceeee-eEeeeccc-ceecCCC--CeeEEEEccCcccc
Confidence 8999999999999887665433221 12235677888888 58888876 8999988 89999999999999
Q ss_pred cccCCcchhhhhhc-------CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeec
Q 008342 415 GYLKNPKANEEAFA-------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487 (569)
Q Consensus 415 gy~~~~~~~~~~~~-------~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 487 (569)
||++++..+...|. +|||+|||+|++|++|++++.||.+|+|+.+|++|+|.+||++|.+||.|.+|+|++.+
T Consensus 369 gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~ 448 (514)
T d1amua_ 369 GYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHK 448 (514)
T ss_dssp EETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred cccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEE
Confidence 99999998888873 67999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHH
Q 008342 488 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 554 (569)
Q Consensus 488 ~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (569)
++..|+.+++++++.++. ..++|+++++++|+.|++|..+++++ ||+|++|||+|++|++
T Consensus 449 ~~~~g~~~~a~v~~~~~~-------~~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 449 DHQEQPYLCAYFVSEKHI-------PLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp CTTSCEEEEEEEEESSCC-------CHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred CCCCCEEEEEEEEcCCCC-------CHHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence 999999999999887764 34789999999999999999999887 9999999999999976
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.8e-69 Score=569.32 Aligned_cols=505 Identities=22% Similarity=0.317 Sum_probs=416.0
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
-|.+.||.++|+++|+++||++|+++.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 21 ~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~ 100 (536)
T d1mdba_ 21 CWAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGA 100 (536)
T ss_dssp SSCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHCCCCeEEEECCEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCc
Confidence 35677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhH
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEY 175 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (569)
+++|++|.++.+++.++|+.++++++++++................... .....+...... ....+
T Consensus 101 i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------------~~~~~ 166 (536)
T d1mdba_ 101 LPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP--TLKNIIVAGEAE------------EFLPL 166 (536)
T ss_dssp EEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCT--TCCCEEEESCCT------------TSEEG
T ss_pred EEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccc--cccceeeeeccc------------cccch
Confidence 9999999999999999999999999999875433211111111100000 112222222111 01112
Q ss_pred HhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHH
Q 008342 176 EKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 255 (569)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (569)
+++ ........+..++++++|+|||||||.||+|++||.++...+......+++.++|++++..|++|.+++...+
T Consensus 167 ~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~ 242 (536)
T d1mdba_ 167 EDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPG 242 (536)
T ss_dssp GGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSH
T ss_pred hhc----ccCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeecc
Confidence 221 1111222345778999999999999999999999999999999999999999999999999999999976444
Q ss_pred HHH-Hh-cceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-
Q 008342 256 SLA-AL-CGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ- 332 (569)
Q Consensus 256 ~~~-~~-g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~- 332 (569)
... +. |.+.+..+.+++..++..+++++++.+..+|..+..+.......... +++++.+++||+++++...+++.+
T Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~~~~~~~~~~~~ 321 (536)
T d1mdba_ 243 VLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD-LSSLQVLQVGGAKFSAEAARRVKAV 321 (536)
T ss_dssp HHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC-CTTCCEEEEESSCCCHHHHTTHHHH
T ss_pred ccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccc-cCcceeEEEeccccccccccchhhc
Confidence 333 33 34444446789999999999999999999999999888775555444 889999999999999999999885
Q ss_pred cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcc
Q 008342 333 KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV 412 (569)
Q Consensus 333 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 412 (569)
++......|+.+|.+..+.... .......+++|.|.++. ...+++.+++++++.+ +.|||+++|+.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~p~~~~-~~~~v~~~~g~~~~~~--~~Gel~v~g~~~ 388 (536)
T d1mdba_ 322 FGCTLQQVFGMAEGLVNYTRLD----------DPEEIIVNTQGKPMSPY-DESRVWDDHDRDVKPG--ETGHLLTRGPYT 388 (536)
T ss_dssp TCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESSTT-CEEEEECTTSCBCCTT--CCEEEEEECTTS
T ss_pred cCceeeeccccccccccccccc----------cccccccCCcccCCCCc-ceEEEEcCCCCeeccc--ccceeecCCCcc
Confidence 4999999999999875444322 12334457889998877 4666666679999888 789999999999
Q ss_pred cccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCC
Q 008342 413 MKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 491 (569)
Q Consensus 413 ~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 491 (569)
+.||++++..+...+ .+|||+|||++++++||++++.||.||+|+++|++|+|.+||++|.+||+|.+|+|++.+++..
T Consensus 389 ~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~ 468 (536)
T d1mdba_ 389 IRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFL 468 (536)
T ss_dssp CSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTT
T ss_pred ccccccccccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCC
Confidence 999999988887777 4689999999999999999999999999999999999999999999999999999999998888
Q ss_pred CceeeEEEEecCCcchhhhhhHHHHHHHHHHhc-CCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 492 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 492 g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
|+.++++|++.++.. ..++|+++++++ |+.|++|..+++++ ||+|++|||+|++|++++.+
T Consensus 469 g~~~~a~v~~~~~~~------~~~~l~~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (536)
T d1mdba_ 469 GERSCVFIIPRDEAP------KAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (536)
T ss_dssp EEEEEEEEEESSSCC------CHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred CeEEEEEEEECCCCC------CHHHHHHHHHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHH
Confidence 999999999876543 347788999875 99999999998877 99999999999999999975
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=2.3e-64 Score=525.74 Aligned_cols=490 Identities=26% Similarity=0.338 Sum_probs=393.2
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGS--KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
.|++++|+++|+++||++|+++.+ +++||+||.+++.++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (503)
T d3cw9a1 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (503)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 389999999999999999999854 699999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHh
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEK 177 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (569)
+|+++.++.+++.+++++++++++|++...... ....... ....++.+.+....
T Consensus 82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~-~~~~~~~--------~~~~~i~~~~~~~~----------------- 135 (503)
T d3cw9a1 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA-DAIFQSG--------SGARIIFLGDLVRD----------------- 135 (503)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEESSCHHHH-HHHHHTT--------CCCEEEEHHHHEET-----------------
T ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEeecchHHH-HHHhhhc--------cccccccchhhhhh-----------------
Confidence 999999999999999999999999988763221 1111111 23444444321100
Q ss_pred hhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhC--CCCCcEEEEcCCccchhhHHHHH
Q 008342 178 FLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG--MNEGAVFLWTLPMFHGNGWSYTW 255 (569)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~--~~~~d~~~~~~p~~~~~g~~~~~ 255 (569)
................++++++++|||||||.||+|.++|.++..........+. ....++++..+|++|..+.....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 215 (503)
T d3cw9a1 136 GEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVL 215 (503)
T ss_dssp TEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTH
T ss_pred hcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccc
Confidence 0000111111223356789999999999999999999999999988877776554 45668999999998888776544
Q ss_pred HH-HHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCC--CCCCCCcccceeeeecCCCCCHHHHHHhhh
Q 008342 256 SL-AALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASP--EDTILPLTNVVNVNTAGAPPPPSLLFAMSQ 332 (569)
Q Consensus 256 ~~-~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~ 332 (569)
.. ...++.++....+++..+...+.+++++.+..+|..+..+..... ..... +++||.+++||++++++...++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Lr~i~~gG~~~~~~~~~~~~~ 294 (503)
T d3cw9a1 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK-LDSLRHVTFAGATMPDAVLETVHQ 294 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCC-CTTCCEEEECSSCCCHHHHHHHHH
T ss_pred ccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccccc-ccceEEEEeccccccccccccccc
Confidence 44 455666666688999999999999999999999998887665422 12222 688999999999999999988884
Q ss_pred c-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecC-
Q 008342 333 K-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS- 410 (569)
Q Consensus 333 ~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~- 410 (569)
. +..+.+.||.+|++..+......... ....+.+.+.. ........++.++.| +.|++.+.+.
T Consensus 295 ~~~~~~~~~yg~~e~~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~g--~~g~~~~~~~~ 359 (503)
T d3cw9a1 295 HLPGEKVNIYGTTEAMNSLYMRQPKTGT-----------EMAPGFFSEVR--IVRIGGGVDEIVANG--EEGELIVAASD 359 (503)
T ss_dssp HCCSEEEEEEEETTTEEEEEEESCSSSS-----------EEBCCTTCCEE--EECTTSCTTCBCCTT--CCEEEEEECCT
T ss_pred cccccccccccccccceeeeeccccccc-----------cccccccccce--eeeeecccCcccCCC--ccccccccccc
Confidence 4 88999999999998665554322111 12222222222 223334457777777 6798877765
Q ss_pred cccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCC
Q 008342 411 CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 490 (569)
Q Consensus 411 ~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 490 (569)
....+|++++..+.+.|.+|||+|||+|++++||.++++||.||+|+++|++|+|.+||++|.+||+|.+|+|++.+++.
T Consensus 360 ~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~ 439 (503)
T d3cw9a1 360 SAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQR 439 (503)
T ss_dssp TSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred cccccccCChhhhHHHhcCCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCC
Confidence 55677889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCceeeEEEEecCCcchhhhhhHHHHHHHHHH-hcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHH
Q 008342 491 WGESPCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA 556 (569)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (569)
.|+.++++|++..+... ..++|.++++ ++|+.|++|+.+++++ ||+|++|||+|++|++++
T Consensus 440 ~g~~~~a~v~~~~~~~~-----~~~~l~~~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 440 WGQSVTACVVPRLGETL-----SADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (503)
T ss_dssp TEEEEEEEEEECTTCCC-----CHHHHHHHHHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred CCeEEEEEEEeCCCCCC-----CHHHHHHHHHhcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence 89999999998876554 5578888885 6799999999998877 999999999999999875
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=88.17 E-value=0.84 Score=44.23 Aligned_cols=110 Identities=11% Similarity=0.044 Sum_probs=73.9
Q ss_pred EEeccCCCCCCcceeecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEe-ccCChHHH
Q 008342 200 LGYTSGTTASPKGVVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAV 275 (569)
Q Consensus 200 i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~-~~~~~~~~ 275 (569)
+.++.+.++ ..+|++.+...+..... ..|++++|++...++-+..+ ....++++..|+..+.+ .....+++
T Consensus 37 ~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~-~v~~lA~~~~G~i~vpl~~~~~~~~l 111 (541)
T d1lcia_ 37 IAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNEREL 111 (541)
T ss_dssp EEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSST-HHHHHHHHHHTCEEEECCTTCCHHHH
T ss_pred EEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCeEEEecCCCCCHHHH
Confidence 444544443 45788888776655444 45899999999888764322 34445556667766666 45788999
Q ss_pred HHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecC
Q 008342 276 YTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAG 319 (569)
Q Consensus 276 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g 319 (569)
...+++.+++.++.....+..+...... ++.++.+++..
T Consensus 112 ~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 150 (541)
T d1lcia_ 112 LNSMNISQPTVVFVSKKGLQKILNVQKK-----LPIIQKIIIMD 150 (541)
T ss_dssp HHHHHHHCCSEEEECGGGHHHHHHHHHH-----CTTCCEEEETT
T ss_pred HHHHHhccceEEeeeccccccchhcccc-----ccccceeeeec
Confidence 9999999999999998877766554321 34455555443
|